BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026219
         (241 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1YZH|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein,
           Methyltransferase From Streptococcus Pneumoniae Tigr4
 pdb|1YZH|B Chain B, Crystal Structure Of The Conserved Hypothetical Protein,
           Methyltransferase From Streptococcus Pneumoniae Tigr4
          Length = 214

 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 44/70 (62%), Gaps = 2/70 (2%)

Query: 116 WSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS 175
           W +++ N   P+ V++GSG G F+   A++NPD  NY+G++I++ ++  A   V E+ + 
Sbjct: 34  WRDLFGNDN-PIHVEVGSGKGAFVSGXAKQNPDI-NYIGIDIQKSVLSYALDKVLEVGVP 91

Query: 176 NIHFLFANAS 185
           NI  L+ + S
Sbjct: 92  NIKLLWVDGS 101


>pdb|2FCA|A Chain A, The Structure Of Bstrmb
 pdb|2FCA|B Chain B, The Structure Of Bstrmb
          Length = 213

 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 52/95 (54%), Gaps = 7/95 (7%)

Query: 116 WSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS 175
           W+ V+ N   P+ +++G+G G+F+  +A++NPD  NY+G+E+ + ++  A   V++    
Sbjct: 31  WNTVFGNDN-PIHIEVGTGKGQFISGMAKQNPDI-NYIGIELFKSVIVTAVQKVKDSEAQ 88

Query: 176 NIHFLFANASVSFKQLVSSY-PGPLMLVSILCPDP 209
           N+  L  +A      L   + PG +  V +   DP
Sbjct: 89  NVKLLNIDADT----LTDVFEPGEVKRVYLNFSDP 119


>pdb|2VDV|E Chain E, Structure Of Trm8, M7g Methylation Enzyme
 pdb|2VDV|F Chain F, Structure Of Trm8, M7g Methylation Enzyme
          Length = 246

 Score = 39.7 bits (91), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 60/166 (36%), Gaps = 23/166 (13%)

Query: 95  RIRQHVNPLSS---SFTVPAPIPDWSEVY---KNPTLPLMV------DIGSGSGRFLIWL 142
           R R H NP S     + V     DWS++Y   KN     M       DIG G G  +I L
Sbjct: 8   RQRAHSNPFSDHQLEYPVSPQDMDWSKLYPYYKNAENGQMTKKVTIADIGCGFGGLMIDL 67

Query: 143 ARRNPDSGNYLGLEIRQKLVKRAEFWVQEL--------ALSNIHFLFANASVSFKQLVSS 194
           +   P+    LG+EIR ++    E  +  L           NI+ L  NA          
Sbjct: 68  SPAFPEDL-ILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEK 126

Query: 195 YPGPLMLVSILCPDPHFXXXXXXXXXXQKPLVDSIIDYLMPGGKVY 240
             G L  +    PDPHF             L+      L  GG VY
Sbjct: 127 --GQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVY 170


>pdb|2VDU|E Chain E, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
           Complex
 pdb|2VDU|F Chain F, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
           Complex
          Length = 254

 Score = 39.3 bits (90), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 60/166 (36%), Gaps = 23/166 (13%)

Query: 95  RIRQHVNPLSS---SFTVPAPIPDWSEVY---KNPTLPLMV------DIGSGSGRFLIWL 142
           R R H NP S     + V     DWS++Y   KN     M       DIG G G  +I L
Sbjct: 16  RQRAHSNPFSDHQLEYPVSPQDMDWSKLYPYYKNAENGQMTKKVTIADIGCGFGGLMIDL 75

Query: 143 ARRNPDSGNYLGLEIRQKLVKRAEFWVQEL--------ALSNIHFLFANASVSFKQLVSS 194
           +   P+    LG+EIR ++    E  +  L           NI+ L  NA          
Sbjct: 76  SPAFPEDL-ILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEK 134

Query: 195 YPGPLMLVSILCPDPHFXXXXXXXXXXQKPLVDSIIDYLMPGGKVY 240
             G L  +    PDPHF             L+      L  GG VY
Sbjct: 135 --GQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVY 178


>pdb|3CKK|A Chain A, Crystal Structure Of Human Methyltransferase-Like Protein
           1
          Length = 235

 Score = 37.7 bits (86), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 55/154 (35%), Gaps = 31/154 (20%)

Query: 115 DWSEVYKNPTLPL----------------------MVDIGSGSGRFLIWLARRNPDSGNY 152
           DWSE+Y     PL                        DIG G G  L+ L+   PD+   
Sbjct: 15  DWSELYPEFFAPLTQNQSHDDPKDKKEKRAQAQVEFADIGCGYGGLLVELSPLFPDT-LI 73

Query: 153 LGLEIRQKLVKRAEFWVQEL------ALSNIHFLFANASVSFKQLVSSYPGPLMLVSILC 206
           LGLEIR K+    +  ++ L         NI  L +NA          Y G L  +  L 
Sbjct: 74  LGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFF--YKGQLTKMFFLF 131

Query: 207 PDPHFXXXXXXXXXXQKPLVDSIIDYLMPGGKVY 240
           PDPHF             L+      L  GG VY
Sbjct: 132 PDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVY 165


>pdb|3DXX|A Chain A, Crystal Structure Of Ectrmb
 pdb|3DXY|A Chain A, Crystal Structure Of Ectrmb In Complex With Sam
 pdb|3DXZ|A Chain A, Crystal Structure Of Ectrmb In Complex With Sah
          Length = 218

 Score = 37.4 bits (85), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 3/112 (2%)

Query: 126 PLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANAS 185
           P+ ++IG G G  L+ +A+  P+  ++LG+E+    V        E  LSN+  +  +A 
Sbjct: 36  PVTLEIGFGMGASLVAMAKDRPEQ-DFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAV 94

Query: 186 VSFKQLVSSYPGPLMLVSILCPDPHFXXXXXXXXXXQKPLVDSIIDYLMPGG 237
               +++      L +V +  PDP            Q P  + +   L  GG
Sbjct: 95  EVLHKMIPD--NSLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGG 144


>pdb|3DH0|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase
           From Aquifex Aeolicus
 pdb|3DH0|B Chain B, Crystal Structure Of A Sam Dependent Methyltransferase
           From Aquifex Aeolicus
          Length = 219

 Score = 33.9 bits (76), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 14/53 (26%), Positives = 33/53 (62%)

Query: 128 MVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFL 180
           ++D+G+G+G +L +L++   + G    +++++++V  A   V +L L N+  L
Sbjct: 41  VLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVL 93


>pdb|1T43|A Chain A, Crystal Structure Analysis Of E.Coli Protein
           (N5)-Glutamine Methyltransferase (Hemk)
          Length = 277

 Score = 33.1 bits (74), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 12/89 (13%)

Query: 128 MVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFAN---- 183
           ++D+G+G+G   + LA   PD    + ++     V  A+   Q LA+ NIH L ++    
Sbjct: 113 ILDLGTGTGAIALALASERPDC-EIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSA 171

Query: 184 -ASVSFKQLVSSYPGPLMLVSILCPDPHF 211
            A   F  +VS+ P       I   DPH 
Sbjct: 172 LAGQQFAMIVSNPP------YIDEQDPHL 194


>pdb|2B3T|A Chain A, Molecular Basis For Bacterial Class 1 Release Factor
           Methylation By Prmc
          Length = 276

 Score = 32.7 bits (73), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 12/89 (13%)

Query: 128 MVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFAN---- 183
           ++D+G+G+G   + LA   PD    + ++     V  A+   Q LA+ NIH L ++    
Sbjct: 113 ILDLGTGTGAIALALASERPDC-EIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSA 171

Query: 184 -ASVSFKQLVSSYPGPLMLVSILCPDPHF 211
            A   F  +VS+ P       I   DPH 
Sbjct: 172 LAGQQFAMIVSNPP------YIDEQDPHL 194


>pdb|2WQ8|A Chain A, Glycan Labelling Using Engineered Variants Of Galactose
           Oxidase Obtained By Directed Evolution
          Length = 661

 Score = 29.3 bits (64), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 104 SSSFTVPAP-IPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRN 146
           +SS+T P P +  W      P +P    I   SGR L+W + RN
Sbjct: 170 ASSYTAPQPGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRN 213


>pdb|2EIB|A Chain A, Crystal Structure Of Galactose Oxidase, W290h Mutant
          Length = 639

 Score = 29.3 bits (64), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 104 SSSFTVPAP-IPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRN 146
           +SS+T P P +  W      P +P    I   SGR L+W + RN
Sbjct: 148 ASSYTAPQPGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRN 191


>pdb|2EIC|A Chain A, Crystal Structure Of Galactose Oxidase Mutant W290f
          Length = 639

 Score = 29.3 bits (64), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 104 SSSFTVPAP-IPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRN 146
           +SS+T P P +  W      P +P    I   SGR L+W + RN
Sbjct: 148 ASSYTAPQPGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRN 191


>pdb|2EID|A Chain A, Galactose Oxidase W290g Mutant
          Length = 639

 Score = 29.3 bits (64), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 104 SSSFTVPAP-IPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRN 146
           +SS+T P P +  W      P +P    I   SGR L+W + RN
Sbjct: 148 ASSYTAPQPGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRN 191


>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
 pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
 pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
 pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
 pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
          Length = 207

 Score = 29.3 bits (64), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 131 IGSGSGRFLIWLARRNPDS------GNYLGLEIRQKLVKRAEFW 168
           + S    FLI  + R+P++      GN + LE RQ   KRA+ W
Sbjct: 99  LDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAW 142


>pdb|1T2X|A Chain A, Glactose Oxidase C383s Mutant Identified By Directed
           Evolution
          Length = 639

 Score = 29.3 bits (64), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 104 SSSFTVPAP-IPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRN 146
           +SS+T P P +  W      P +P    I   SGR L+W + RN
Sbjct: 148 ASSYTAPQPGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRN 191


>pdb|2EIE|A Chain A, Crystal Structure Of Galactose Oxidase Complexed With
           Azide
 pdb|1GOF|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
           Structure Of Galactose Oxidase
 pdb|1GOG|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
           Structure Of Galactose Oxidase
 pdb|1GOH|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
           Structure Of Galactose Oxidase
 pdb|2JKX|A Chain A, Galactose Oxidase. Matgo. Copper Free, Expressed In Pichia
           Pastoris.
 pdb|2VZ1|A Chain A, Premat-Galactose Oxidase
 pdb|2VZ3|A Chain A, Bleached Galactose Oxidase
          Length = 639

 Score = 29.3 bits (64), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 104 SSSFTVPAP-IPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRN 146
           +SS+T P P +  W      P +P    I   SGR L+W + RN
Sbjct: 148 ASSYTAPQPGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRN 191


>pdb|1K3I|A Chain A, Crystal Structure Of The Precursor Of Galactose Oxidase
          Length = 656

 Score = 29.3 bits (64), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 104 SSSFTVPAP-IPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRN 146
           +SS+T P P +  W      P +P    I   SGR L+W + RN
Sbjct: 165 ASSYTAPQPGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRN 208


>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
           With Monoprenylated Rab7 Protein
 pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
 pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
 pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
 pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
          Length = 207

 Score = 28.9 bits (63), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 131 IGSGSGRFLIWLARRNPDS------GNYLGLEIRQKLVKRAEFW 168
           + S    FLI  + R+P++      GN + LE RQ   KRA+ W
Sbjct: 99  LDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAW 142


>pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From
           Methanosarcina Mazei
 pdb|3MGG|B Chain B, Crystal Structure Of Methyl Transferase From
           Methanosarcina Mazei
          Length = 276

 Score = 28.9 bits (63), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 128 MVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFAN 183
           +++ G G G   + LA+ NPD+     ++I  + +++A    ++  + N+ FL AN
Sbjct: 41  VLEAGCGIGAQTVILAKNNPDA-EITSIDISPESLEKARENTEKNGIKNVKFLQAN 95


>pdb|1VG1|A Chain A, Gdp-bound Rab7
 pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
           With C-Terminally Truncated Rab7 Protein
 pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
           With C-Terminally Truncated Rab7 Protein
 pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
           With C-Terminally Truncated Rab7 Protein
 pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
           With C-Terminally Truncated Rab7 Protein
          Length = 185

 Score = 28.5 bits (62), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 131 IGSGSGRFLIWLARRNPDS------GNYLGLEIRQKLVKRAEFW 168
           + S    FLI  + R+P++      GN + LE RQ   KRA+ W
Sbjct: 99  LDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAW 142


>pdb|1NKV|A Chain A, X-Ray Structure Of Yjhp From E.Coli Northeast Structural
           Genomics Research Consortium (Nesg) Target Er13
 pdb|1NKV|B Chain B, X-Ray Structure Of Yjhp From E.Coli Northeast Structural
           Genomics Research Consortium (Nesg) Target Er13
 pdb|1NKV|C Chain C, X-Ray Structure Of Yjhp From E.Coli Northeast Structural
           Genomics Research Consortium (Nesg) Target Er13
          Length = 256

 Score = 28.5 bits (62), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 3/59 (5%)

Query: 128 MVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IHFLFANAS 185
           ++D+GSGSG  L   AR +  +G   G++       +A+   +EL +S  +HF+  +A+
Sbjct: 40  ILDLGSGSGEXLCTWARDHGITGT--GIDXSSLFTAQAKRRAEELGVSERVHFIHNDAA 96


>pdb|3F8T|A Chain A, Crystal Structure Analysis Of A Full-Length Mcm Homolog
           From Methanopyrus Kandleri
          Length = 506

 Score = 28.5 bits (62), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 1/79 (1%)

Query: 66  IRSTDLVALEFAELN-LPVSNKITGELGHARIRQHVNPLSSSFTVPAPIPDWSEVYKNPT 124
           +RS  L ALE  + + +P  +    EL   R     +PL++     AP+P   EV K   
Sbjct: 167 VRSATLDALEVHKKDPIPEVHPDPAELEEFRELADKDPLTTFARAIAPLPGAEEVGKMLA 226

Query: 125 LPLMVDIGSGSGRFLIWLA 143
           L L   +G  S R  + LA
Sbjct: 227 LQLFSCVGKNSERLHVLLA 245


>pdb|1O54|A Chain A, Crystal Structure Of Sam-Dependent O-Methyltransferase
           (Tm0748) From Thermotoga Maritima At 1.65 A Resolution
          Length = 277

 Score = 27.7 bits (60), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 8/76 (10%)

Query: 91  LGHARIRQHVNPLSSSFTVPAPIPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSG 150
           +   R  Q V P  SSF   A + D  E  +      ++D G GSG     LAR    SG
Sbjct: 87  MNMKRRTQIVYPKDSSFI--AMMLDVKEGDR------IIDTGVGSGAMCAVLARAVGSSG 138

Query: 151 NYLGLEIRQKLVKRAE 166
                E R++  K AE
Sbjct: 139 KVFAYEKREEFAKLAE 154


>pdb|3M1G|A Chain A, The Structure Of A Putative Glutathione S-Transferase From
           Corynebacterium Glutamicum
 pdb|3M1G|B Chain B, The Structure Of A Putative Glutathione S-Transferase From
           Corynebacterium Glutamicum
 pdb|3M1G|C Chain C, The Structure Of A Putative Glutathione S-Transferase From
           Corynebacterium Glutamicum
          Length = 362

 Score = 27.3 bits (59), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 6/52 (11%)

Query: 77  AELN----LPVSNKITG-ELGHARIRQHVNPLSSSFTVPAPIPDWSEVYKNP 123
           AE+N    +PV   ++G    H R +   +P +   T+P PIP   EV KNP
Sbjct: 307 AEINPTRIVPVGPDLSGFATPHGREKLGGSPFAEGVTLPGPIPAGEEV-KNP 357


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.137    0.429 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,476,738
Number of Sequences: 62578
Number of extensions: 230217
Number of successful extensions: 464
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 458
Number of HSP's gapped (non-prelim): 25
length of query: 241
length of database: 14,973,337
effective HSP length: 96
effective length of query: 145
effective length of database: 8,965,849
effective search space: 1300048105
effective search space used: 1300048105
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)