BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026219
(241 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2JJQ0|TRMB_SYNJB tRNA (guanine-N(7)-)-methyltransferase OS=Synechococcus sp. (strain
JA-2-3B'a(2-13)) GN=trmB PE=3 SV=1
Length = 239
Score = 157 bits (396), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 81/151 (53%), Positives = 102/151 (67%), Gaps = 4/151 (2%)
Query: 91 LGHARIRQHVNPLSSSFTVPAPIPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSG 150
LGH R+RQHVNPL + + PAP P W VY+ P +DIG+GSGRFL+ +A+ PD
Sbjct: 34 LGH-RVRQHVNPLQAQYQQPAPPPHWERVYRRLGQPFHLDIGTGSGRFLLRIAQEQPD-W 91
Query: 151 NYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPH 210
N+LG+EIRQ LV+RA W EL L N+HFLFAN +VS + L + PG L V+IL PDP
Sbjct: 92 NFLGVEIRQALVERANAWRDELGLDNVHFLFANINVSLRHLFA--PGDLSRVTILFPDPW 149
Query: 211 FKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241
FKK+HHKRR+VQ LV + L PG V+
Sbjct: 150 FKKRHHKRRIVQPQLVADLALLLRPGSPVFL 180
>sp|Q2JRH1|TRMB_SYNJA tRNA (guanine-N(7)-)-methyltransferase OS=Synechococcus sp. (strain
JA-3-3Ab) GN=trmB PE=3 SV=1
Length = 236
Score = 152 bits (385), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 78/147 (53%), Positives = 98/147 (66%), Gaps = 3/147 (2%)
Query: 95 RIRQHVNPLSSSFTVPAPIPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLG 154
R+RQHVNPL + + P P P W VY+ PL +DIGSGSGRFL+ +A+ PD N+LG
Sbjct: 34 RLRQHVNPLQAQYQQPTPPPHWERVYRRLGQPLHLDIGSGSGRFLLRMAQEQPD-WNFLG 92
Query: 155 LEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKK 214
+EIRQ LV+RA W EL L N+HFLFAN +VS + L + PG L V+I PDP FKK+
Sbjct: 93 VEIRQPLVERANAWRDELGLDNVHFLFANINVSLRHLFA--PGDLSRVTIQFPDPWFKKR 150
Query: 215 HHKRRVVQKPLVDSIIDYLMPGGKVYF 241
HHKRR+VQ LV + L PG V+
Sbjct: 151 HHKRRIVQPRLVADLALLLQPGSPVFL 177
>sp|Q117P8|TRMB_TRIEI tRNA (guanine-N(7)-)-methyltransferase OS=Trichodesmium erythraeum
(strain IMS101) GN=trmB PE=3 SV=1
Length = 220
Score = 139 bits (351), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 71/149 (47%), Positives = 99/149 (66%), Gaps = 2/149 (1%)
Query: 94 ARIRQHVNPLSSSFTVPAPIPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYL 153
RIRQHVNPL+S + IP++S++Y + PL +DIG GRFL +A+ P+ N+L
Sbjct: 4 VRIRQHVNPLASKYQQSVTIPNFSDIYADIKKPLYLDIGCARGRFLWQMAQVEPE-WNFL 62
Query: 154 GLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYP-GPLMLVSILCPDPHFK 212
GLEIR+ LV A W E L+N+H+LF NA++S ++ S+P G L VSIL PDP FK
Sbjct: 63 GLEIREPLVIEANNWRDEKGLNNLHYLFCNANISLGKIFESFPKGILKKVSILFPDPWFK 122
Query: 213 KKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241
++H RRVVQ LV+ + +YL GG+V+
Sbjct: 123 RRHQTRRVVQPKLVEDLANYLTVGGEVFL 151
>sp|Q3M3Q5|TRMB_ANAVT tRNA (guanine-N(7)-)-methyltransferase OS=Anabaena variabilis
(strain ATCC 29413 / PCC 7937) GN=trmB PE=3 SV=1
Length = 215
Score = 133 bits (334), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 72/152 (47%), Positives = 97/152 (63%), Gaps = 2/152 (1%)
Query: 91 LGHARIRQHVNPLSSSFTVPAPIPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSG 150
L R+RQHVNPL+ + PA +W +VY +P PL +DIG GRF++ +A+ P
Sbjct: 4 LPFVRVRQHVNPLAQKYLTPANPLEWEKVYSSPHQPLHLDIGCARGRFVLQMAQVEP-RW 62
Query: 151 NYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYP-GPLMLVSILCPDP 209
N+LGLEIR+ LV A + +L LSN+H+L+ NA+ S + L+SS P G L V+I PDP
Sbjct: 63 NFLGLEIREPLVIEANQFRSQLGLSNLHYLYCNANNSLQPLLSSLPTGILQRVTIQFPDP 122
Query: 210 HFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241
FK +H KRRVVQ LV I +YL GG V+
Sbjct: 123 WFKTRHAKRRVVQPELVQDIANYLAVGGVVFL 154
>sp|Q8YVX4|TRMB_NOSS1 tRNA (guanine-N(7)-)-methyltransferase OS=Nostoc sp. (strain PCC
7120 / UTEX 2576) GN=trmB PE=3 SV=1
Length = 219
Score = 132 bits (333), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/152 (46%), Positives = 96/152 (63%), Gaps = 2/152 (1%)
Query: 91 LGHARIRQHVNPLSSSFTVPAPIPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSG 150
L R+RQHVNPL+ + PA +W + Y P PL +DIG GRF++ +A+ P+
Sbjct: 8 LPFVRVRQHVNPLAQKYLTPANPLEWEKAYSTPHQPLHLDIGCARGRFVLQMAQVEPN-W 66
Query: 151 NYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYP-GPLMLVSILCPDP 209
N+LGLEIR+ LV A + +L L+N+H+L+ NA+ S + L+SS P G L V+I PDP
Sbjct: 67 NFLGLEIRESLVIEANQFRSQLGLTNLHYLYCNANNSLQPLLSSLPTGILQRVTIQFPDP 126
Query: 210 HFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241
FK +H KRRVVQ LV I +YL GG V+
Sbjct: 127 WFKTRHAKRRVVQPELVQDIANYLAVGGVVFL 158
>sp|P73161|TRMB_SYNY3 tRNA (guanine-N(7)-)-methyltransferase OS=Synechocystis sp. (strain
PCC 6803 / Kazusa) GN=trmB PE=3 SV=2
Length = 211
Score = 132 bits (332), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 94/149 (63%), Gaps = 1/149 (0%)
Query: 91 LGHARIRQHVNPLSSSFTVPAPIPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSG 150
+ RIRQHVNPLS + PDW+ VY + PL +DIG GRF + +A+++PD
Sbjct: 1 MARVRIRQHVNPLSEKYRQVLACPDWATVYDDVQRPLHLDIGCARGRFPLKMAQQHPD-W 59
Query: 151 NYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPH 210
N+LG+EIRQ LV A L L N+H+LF N +V ++ S++P L VSI PDP
Sbjct: 60 NFLGVEIRQPLVLEANETGDRLGLKNLHYLFGNINVEPEKFFSAFPPTLQRVSIQFPDPW 119
Query: 211 FKKKHHKRRVVQKPLVDSIIDYLMPGGKV 239
FK++H+KRRV Q LV +I + L PGG+V
Sbjct: 120 FKQRHNKRRVAQPELVTAIANALPPGGEV 148
>sp|Q5N2X5|TRMB_SYNP6 tRNA (guanine-N(7)-)-methyltransferase OS=Synechococcus sp. (strain
ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=trmB PE=3 SV=1
Length = 213
Score = 131 bits (330), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 70/152 (46%), Positives = 94/152 (61%), Gaps = 2/152 (1%)
Query: 91 LGHARIRQHVNPLSSSFTVPAPIPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSG 150
+ R+RQHVNPLS F V PDW +VY + PL +DIG GRFL+ +A P+
Sbjct: 1 MARVRVRQHVNPLSQKFQVVTTWPDWQQVYADCDRPLHLDIGCARGRFLLAMATAQPE-W 59
Query: 151 NYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYP-GPLMLVSILCPDP 209
NYLGLEIR+ LV A +E L+N+++ F+NA++ + L+ S P G L VSI PDP
Sbjct: 60 NYLGLEIREPLVDEANAIARERELTNLYYHFSNANLDLEPLLRSLPTGILQRVSIQFPDP 119
Query: 210 HFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241
FKK+H KRRVVQ LV ++ L G +V+
Sbjct: 120 WFKKRHQKRRVVQPELVQALATALPAGAEVFL 151
>sp|P72546|TRMB_SYNE7 tRNA (guanine-N(7)-)-methyltransferase OS=Synechococcus elongatus
(strain PCC 7942) GN=trmB PE=3 SV=2
Length = 213
Score = 131 bits (330), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 70/152 (46%), Positives = 94/152 (61%), Gaps = 2/152 (1%)
Query: 91 LGHARIRQHVNPLSSSFTVPAPIPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSG 150
+ R+RQHVNPLS F V PDW +VY + PL +DIG GRFL+ +A P+
Sbjct: 1 MARVRVRQHVNPLSQKFQVVTTWPDWQQVYADCDRPLHLDIGCARGRFLLAMATAQPE-W 59
Query: 151 NYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYP-GPLMLVSILCPDP 209
NYLGLEIR+ LV A +E L+N+++ F+NA++ + L+ S P G L VSI PDP
Sbjct: 60 NYLGLEIREPLVDEANAIARERELTNLYYHFSNANLDLEPLLRSLPTGILQRVSIQFPDP 119
Query: 210 HFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241
FKK+H KRRVVQ LV ++ L G +V+
Sbjct: 120 WFKKRHQKRRVVQPELVQALATALPAGAEVFL 151
>sp|B0JUK5|TRMB_MICAN tRNA (guanine-N(7)-)-methyltransferase OS=Microcystis aeruginosa
(strain NIES-843) GN=trmB PE=3 SV=1
Length = 211
Score = 129 bits (325), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 69/152 (45%), Positives = 98/152 (64%), Gaps = 2/152 (1%)
Query: 91 LGHARIRQHVNPLSSSFTVPAPIPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSG 150
+ R+RQHVNPLS + P PDW++VY++ T PL +DIG G+FL+ +A+ P+
Sbjct: 1 MAKVRVRQHVNPLSHKYRHPIAPPDWNQVYQDMTQPLHLDIGCARGKFLLQMAQVEPEI- 59
Query: 151 NYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPG-PLMLVSILCPDP 209
N+LG+EIRQ LV A + L LSN+ F+F N +V+ + L+ S P L VSI PDP
Sbjct: 60 NFLGIEIRQPLVIEANQERERLGLSNLAFVFGNMNVAPEILLQSLPADKLFWVSIQFPDP 119
Query: 210 HFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241
FK++H KRRVVQ LV ++ Y++ GG V+
Sbjct: 120 WFKQRHSKRRVVQPELVIALAKYMVAGGWVFL 151
>sp|Q8DHH6|TRMB_THEEB tRNA (guanine-N(7)-)-methyltransferase OS=Thermosynechococcus
elongatus (strain BP-1) GN=trmB PE=3 SV=1
Length = 213
Score = 126 bits (316), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/146 (45%), Positives = 90/146 (61%), Gaps = 3/146 (2%)
Query: 94 ARIRQHVNPLSSSFTVPAPIPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYL 153
R+RQHVNPLS F P+PDWS +Y+ P+ PL +DIG G FL+ +A P+ N+L
Sbjct: 8 VRVRQHVNPLSQKFQQDIPVPDWSRIYEQPSQPLHLDIGCARGTFLLEMAALYPEQ-NFL 66
Query: 154 GLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKK 213
GLEIR LV A L N+H+L+ NA+V +++ PL V+I PDP FK+
Sbjct: 67 GLEIRYPLVVAANERRDRQQLRNLHYLWGNANVHLSKILGGL--PLHTVTIQFPDPWFKR 124
Query: 214 KHHKRRVVQKPLVDSIIDYLMPGGKV 239
+HHKRRVV LV ++ + L GG+V
Sbjct: 125 RHHKRRVVTPELVATLAELLPAGGRV 150
>sp|Q7V4W7|TRMB_PROMM tRNA (guanine-N(7)-)-methyltransferase OS=Prochlorococcus marinus
(strain MIT 9313) GN=trmB PE=3 SV=1
Length = 236
Score = 115 bits (289), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/147 (43%), Positives = 91/147 (61%), Gaps = 2/147 (1%)
Query: 96 IRQHVNPLSSSFTVPAPIPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGL 155
+RQHVNPLS F +P P+P E++ + PL +DIG G FL+ LA P+ N++G+
Sbjct: 1 MRQHVNPLSRFFQLPRPLPSPEEMFAQSSRPLHLDIGCARGGFLLSLAPLQPE-WNHVGV 59
Query: 156 EIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYP-GPLMLVSILCPDPHFKKK 214
EIR LV AE QEL L N+ FLF N +VS ++ + + P L VSI PDP FK++
Sbjct: 60 EIRHPLVLSAERDRQELELDNLRFLFCNVNVSLEEWLDALPRDQLQWVSIQFPDPWFKRR 119
Query: 215 HHKRRVVQKPLVDSIIDYLMPGGKVYF 241
H KRRV+Q L+ ++ L PG +++
Sbjct: 120 HQKRRVLQPSLLIALATALQPGRELFI 146
>sp|A2CCG0|TRMB_PROM3 tRNA (guanine-N(7)-)-methyltransferase OS=Prochlorococcus marinus
(strain MIT 9303) GN=trmB PE=3 SV=1
Length = 236
Score = 115 bits (287), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 64/147 (43%), Positives = 91/147 (61%), Gaps = 2/147 (1%)
Query: 96 IRQHVNPLSSSFTVPAPIPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGL 155
+RQHVNPLS F +P P+P E++ + PL +DIG G FL+ LA P+ N++G+
Sbjct: 1 MRQHVNPLSRFFQLPRPLPSPEEMFAQSSRPLHLDIGCARGGFLLGLAPLQPE-WNHVGV 59
Query: 156 EIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYP-GPLMLVSILCPDPHFKKK 214
EIR LV AE QEL L N+ FLF N +VS ++ + + P L VSI PDP FK++
Sbjct: 60 EIRHPLVLSAERDRQELKLDNLRFLFCNVNVSLEEWLDALPRDQLQWVSIQFPDPWFKRR 119
Query: 215 HHKRRVVQKPLVDSIIDYLMPGGKVYF 241
H KRRV+Q L+ ++ L PG +++
Sbjct: 120 HQKRRVLQPSLLIALATALQPGRELFI 146
>sp|Q7V350|TRMB_PROMP tRNA (guanine-N(7)-)-methyltransferase OS=Prochlorococcus marinus
subsp. pastoris (strain CCMP1986 / MED4) GN=trmB PE=3
SV=1
Length = 209
Score = 114 bits (284), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 62/146 (42%), Positives = 91/146 (62%), Gaps = 2/146 (1%)
Query: 96 IRQHVNPLSSSFTVPAPIPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGL 155
+RQHVNPLS +F PIP ++V++NP LPL +DIG SG FL L+ +N + NY+G+
Sbjct: 1 MRQHVNPLSKNFFEIDPIPPLNQVFENPKLPLHLDIGCASGEFLFELSLKNKN-WNYIGI 59
Query: 156 EIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVS-SYPGPLMLVSILCPDPHFKKK 214
EIR+KLV A ++ N++F F NA+ F Q + S + +S PDP FKKK
Sbjct: 60 EIREKLVLNANLKMKSRENKNLYFSFGNANNIFNQTNNKSIINLITSISFNFPDPWFKKK 119
Query: 215 HHKRRVVQKPLVDSIIDYLMPGGKVY 240
HHKRRV+Q L++ + + + G ++
Sbjct: 120 HHKRRVIQPKLLNLLSNSMKKGSLIF 145
>sp|Q46HD3|TRMB_PROMT tRNA (guanine-N(7)-)-methyltransferase OS=Prochlorococcus marinus
(strain NATL2A) GN=trmB PE=3 SV=1
Length = 214
Score = 114 bits (284), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 62/146 (42%), Positives = 92/146 (63%), Gaps = 2/146 (1%)
Query: 96 IRQHVNPLSSSFTVPAPIPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGL 155
+RQHVNPLS F +P +P + +++ P+ +DIGS G FLI LA + PD N++GL
Sbjct: 1 MRQHVNPLSQFFQLPLSLPSKNILFEKSHYPIHLDIGSAKGEFLIELATKCPD-WNFVGL 59
Query: 156 EIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYP-GPLMLVSILCPDPHFKKK 214
EIR+ LV E ++L L+N+ FLF N +VS + +S G L VSI PDP FK+K
Sbjct: 60 EIREPLVSLCEKKRRKLELTNLKFLFCNVNVSLDEWLSDLDFGQLKRVSIQFPDPWFKRK 119
Query: 215 HHKRRVVQKPLVDSIIDYLMPGGKVY 240
H KRRV++ +++SI + G+++
Sbjct: 120 HFKRRVLKTNILNSIAKAMSKNGEIF 145
>sp|A2C073|TRMB_PROM1 tRNA (guanine-N(7)-)-methyltransferase OS=Prochlorococcus marinus
(strain NATL1A) GN=trmB PE=3 SV=1
Length = 214
Score = 112 bits (281), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/146 (42%), Positives = 91/146 (62%), Gaps = 2/146 (1%)
Query: 96 IRQHVNPLSSSFTVPAPIPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGL 155
+RQHVNPLS F +P +P + +++ P+ +DIGS G FLI LA + PD N++GL
Sbjct: 1 MRQHVNPLSQFFQLPLSLPSKNILFEKSHYPIHLDIGSAKGEFLIELATKYPD-WNFVGL 59
Query: 156 EIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYP-GPLMLVSILCPDPHFKKK 214
EIR+ LV E ++L L+N+ FLF N +VS + +S G L VSI PDP FK+K
Sbjct: 60 EIREPLVSLCEKKRRKLELTNLKFLFCNVNVSLDEWLSDLDFGQLKRVSIQFPDPWFKRK 119
Query: 215 HHKRRVVQKPLVDSIIDYLMPGGKVY 240
H KRRV+ +++SI + G+++
Sbjct: 120 HFKRRVLNTNILNSIAKSMSKDGEIF 145
>sp|A2BUM1|TRMB_PROM5 tRNA (guanine-N(7)-)-methyltransferase OS=Prochlorococcus marinus
(strain MIT 9515) GN=trmB PE=3 SV=1
Length = 209
Score = 112 bits (280), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/137 (43%), Positives = 85/137 (62%), Gaps = 10/137 (7%)
Query: 96 IRQHVNPLSSSFTVPAPIPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGL 155
+RQHVNPLS +F PIP +EV++NP LPL +DIG SG FL+ L+ +N + NY+G+
Sbjct: 1 MRQHVNPLSKNFFEIDPIPPLNEVFENPQLPLHLDIGCASGDFLMELSLKNKN-WNYIGI 59
Query: 156 EIRQKLVKRAEFWVQELALSNIHFLFANA-----SVSFKQLVSSYPGPLMLVSILCPDPH 210
EIR+KLV A ++ N++F F NA + + K L+ + +S PDP
Sbjct: 60 EIREKLVLNANLKIKNREYKNVYFSFGNAINILNNTNNKTLIDAITS----ISFYFPDPW 115
Query: 211 FKKKHHKRRVVQKPLVD 227
FKKKHHKRRV+Q ++
Sbjct: 116 FKKKHHKRRVIQPEFIN 132
>sp|A8G2P9|TRMB_PROM2 tRNA (guanine-N(7)-)-methyltransferase OS=Prochlorococcus marinus
(strain MIT 9215) GN=trmB PE=3 SV=1
Length = 209
Score = 112 bits (279), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 62/146 (42%), Positives = 89/146 (60%), Gaps = 2/146 (1%)
Query: 96 IRQHVNPLSSSFTVPAPIPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGL 155
+RQHVNPLSS+F IP SE++ + L L +DIG +G FL LA N S NYLG+
Sbjct: 1 MRQHVNPLSSNFNKIERIPSLSEMFGDSKLNLHLDIGCAAGEFLFNLASVNT-SWNYLGI 59
Query: 156 EIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSY-PGPLMLVSILCPDPHFKKK 214
EIR+KLVK A+ V E + N++F+F NA+ + S Y + +S PDP FKK+
Sbjct: 60 EIREKLVKNAKLKVFEREIKNLYFVFGNANNILNDVQSKYIIRNIKSISFNFPDPWFKKR 119
Query: 215 HHKRRVVQKPLVDSIIDYLMPGGKVY 240
H+KRRV+Q ++ + + L G ++
Sbjct: 120 HYKRRVIQPEFINVLSNQLQKGTLIF 145
>sp|A5GIJ2|TRMB_SYNPW tRNA (guanine-N(7)-)-methyltransferase OS=Synechococcus sp. (strain
WH7803) GN=trmB PE=3 SV=1
Length = 237
Score = 108 bits (270), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/146 (42%), Positives = 92/146 (63%), Gaps = 2/146 (1%)
Query: 96 IRQHVNPLSSSFTVPAPIPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGL 155
+RQHVNPLS F +P +P +++ +P P+ +DIG G L LA PD N+LG+
Sbjct: 1 MRQHVNPLSRFFQLPLELPAPEQLFDDPGRPIHLDIGCARGICLQELAALRPDR-NHLGV 59
Query: 156 EIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGP-LMLVSILCPDPHFKKK 214
EIR+ LV+ A+ +L N+H+LF NA+VS + +++ P L LVSI PDP FK++
Sbjct: 60 EIRRPLVRSAQRDRDQLERLNLHYLFCNANVSLEGWMAALPQDRLQLVSIQFPDPWFKRR 119
Query: 215 HHKRRVVQKPLVDSIIDYLMPGGKVY 240
H KRRV+Q L+ +I L PG +++
Sbjct: 120 HRKRRVLQPSLLLAIAATLQPGRELF 145
>sp|A2BP39|TRMB_PROMS tRNA (guanine-N(7)-)-methyltransferase OS=Prochlorococcus marinus
(strain AS9601) GN=trmB PE=3 SV=1
Length = 209
Score = 107 bits (267), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 61/146 (41%), Positives = 86/146 (58%), Gaps = 2/146 (1%)
Query: 96 IRQHVNPLSSSFTVPAPIPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGL 155
+RQHVNPLS +F IP E++ + L L +DIG +G FL LA N S NYLG+
Sbjct: 1 MRQHVNPLSINFNQIERIPSLGEMFGDSKLNLHLDIGCAAGEFLFDLALVNT-SWNYLGI 59
Query: 156 EIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSY-PGPLMLVSILCPDPHFKKK 214
EIR+KLVK A+ V E + N++FLF NA+ + S L +S PDP FKK+
Sbjct: 60 EIREKLVKNAKLKVLESEIKNLYFLFGNANNILNDVQSELIIKNLKSISFYFPDPWFKKR 119
Query: 215 HHKRRVVQKPLVDSIIDYLMPGGKVY 240
H+KRRV+Q ++ + + L G ++
Sbjct: 120 HYKRRVIQPEFINILSNLLQKGTLIF 145
>sp|Q3AW35|TRMB_SYNS9 tRNA (guanine-N(7)-)-methyltransferase OS=Synechococcus sp. (strain
CC9902) GN=trmB PE=3 SV=1
Length = 236
Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/147 (41%), Positives = 90/147 (61%), Gaps = 2/147 (1%)
Query: 96 IRQHVNPLSSSFTVPAPIPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGL 155
+RQHVNPLS SF +P +P SE++ +P P+ +DIG GR ++ LA R+P+ N++G+
Sbjct: 1 MRQHVNPLSRSFQLPLRLPPPSELFTHPEHPIHLDIGCARGRCILDLADRHPN-WNHIGV 59
Query: 156 EIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGP-LMLVSILCPDPHFKKK 214
EIR+ LV A+ E N+ LF NA++S + + + P L VSI PDP FK++
Sbjct: 60 EIRRPLVIPADREALESPHGNVRVLFCNANISLEGWMETLPKDRLQRVSIQFPDPWFKRR 119
Query: 215 HHKRRVVQKPLVDSIIDYLMPGGKVYF 241
H KRRV+Q L+ +I L PG +
Sbjct: 120 HRKRRVLQPRLLMAIASALQPGKDFFI 146
>sp|Q0IDB0|TRMB_SYNS3 tRNA (guanine-N(7)-)-methyltransferase OS=Synechococcus sp. (strain
CC9311) GN=trmB PE=3 SV=1
Length = 237
Score = 105 bits (261), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 82/126 (65%), Gaps = 2/126 (1%)
Query: 96 IRQHVNPLSSSFTVPAPIPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGL 155
+RQHVNPLS F +P +P E++++P LP+ +DIG G FL+ LA P+ N+LG+
Sbjct: 1 MRQHVNPLSRFFQLPLELPAPHELFEHPNLPIHLDIGCARGFFLLELAAMQPER-NHLGV 59
Query: 156 EIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSY-PGPLMLVSILCPDPHFKKK 214
EIR+ LV+ A+ N+HFLF NA++S + +++ P L LVSI PDP FK++
Sbjct: 60 EIRRPLVQAAQHDRDRQEQHNLHFLFCNANISLEAWMAALPPDQLQLVSIQFPDPWFKQR 119
Query: 215 HHKRRV 220
H KRRV
Sbjct: 120 HRKRRV 125
>sp|Q7VDU8|TRMB_PROMA tRNA (guanine-N(7)-)-methyltransferase OS=Prochlorococcus marinus
(strain SARG / CCMP1375 / SS120) GN=trmB PE=3 SV=1
Length = 213
Score = 102 bits (255), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/146 (41%), Positives = 88/146 (60%), Gaps = 2/146 (1%)
Query: 96 IRQHVNPLSSSFTVPAPIPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGL 155
+RQHVNPLS F + +P +++++ LP+ +DIG G+FLI +A N N+LG+
Sbjct: 1 MRQHVNPLSHFFQLHNELPRPEDLFESIDLPIHLDIGCARGKFLIDMAADNA-QWNFLGV 59
Query: 156 EIRQKLVKRAEFWVQELALSNIHFLFANASVSF-KQLVSSYPGPLMLVSILCPDPHFKKK 214
EIR+ LV AE EL L+N+ F F NA++S K +S G L VSI PDP FKK+
Sbjct: 60 EIREPLVFAAEKERIELGLTNLRFFFCNANISLEKWFLSLENGQLKRVSIQFPDPWFKKR 119
Query: 215 HHKRRVVQKPLVDSIIDYLMPGGKVY 240
H KRRV+ + + + L G +++
Sbjct: 120 HRKRRVLNQSFLFLLAQSLDIGSELF 145
>sp|Q31CU2|TRMB_PROM9 tRNA (guanine-N(7)-)-methyltransferase OS=Prochlorococcus marinus
(strain MIT 9312) GN=trmB PE=3 SV=1
Length = 209
Score = 98.6 bits (244), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 87/146 (59%), Gaps = 2/146 (1%)
Query: 96 IRQHVNPLSSSFTVPAPIPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGL 155
+RQHVNPLS +F IP E++ + L +DIG +G FL LA N + NY+G+
Sbjct: 1 MRQHVNPLSRNFNEIERIPALIEMFGDSKSNLHLDIGCAAGEFLFDLALINT-NWNYIGI 59
Query: 156 EIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYP-GPLMLVSILCPDPHFKKK 214
EIR++LVK A+ V+E + N++F+F NA+ + S + + +S PDP FKK+
Sbjct: 60 EIRERLVKTAKLKVRERDIKNLYFIFGNANNILHDVQSKFIFKNVKSISFNFPDPWFKKR 119
Query: 215 HHKRRVVQKPLVDSIIDYLMPGGKVY 240
H+KRRV+Q ++ + + L G ++
Sbjct: 120 HYKRRVIQPEFLNLLSNSLQKGSLIF 145
>sp|Q3AMX6|TRMB_SYNSC tRNA (guanine-N(7)-)-methyltransferase OS=Synechococcus sp. (strain
CC9605) GN=trmB PE=3 SV=1
Length = 234
Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/147 (40%), Positives = 88/147 (59%), Gaps = 2/147 (1%)
Query: 96 IRQHVNPLSSSFTVPAPIPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGL 155
+RQHVNPLSS F +P +P ++++ P P+ +DIG GR L+ LA R+P N+LG+
Sbjct: 1 MRQHVNPLSSFFQLPLELPPPEQLFRVPDQPIHLDIGCARGRCLLGLAERDP-HWNHLGV 59
Query: 156 EIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYP-GPLMLVSILCPDPHFKKK 214
EIR+ LV A+ N+ LF NA++S + + + L VSI PDP FK++
Sbjct: 60 EIRRPLVTSADRDALASEHGNVRILFCNANISLEGWMKALKQDQLQRVSIQFPDPWFKRR 119
Query: 215 HHKRRVVQKPLVDSIIDYLMPGGKVYF 241
H KRRV+Q L+ +I L PG +++
Sbjct: 120 HRKRRVLQPALLLAIATALQPGRELFL 146
>sp|Q7U9H3|TRMB_SYNPX tRNA (guanine-N(7)-)-methyltransferase OS=Synechococcus sp. (strain
WH8102) GN=trmB PE=3 SV=1
Length = 236
Score = 94.4 bits (233), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 52/126 (41%), Positives = 76/126 (60%), Gaps = 2/126 (1%)
Query: 96 IRQHVNPLSSSFTVPAPIPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGL 155
+RQHVNPLS F +P +P E++ +P P+ +DIG GR ++ LA NP N+LG+
Sbjct: 1 MRQHVNPLSRFFQLPLQLPSPGELFDHPEQPIHLDIGCARGRCILGLAELNP-GWNHLGV 59
Query: 156 EIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGP-LMLVSILCPDPHFKKK 214
EIR+ LV A+ N+ LF NA++S + +++ P L VS+ PDP FK++
Sbjct: 60 EIRRPLVTAADRDALNSGSGNVRVLFCNANISLESWLAALPNDRLQRVSVQFPDPWFKRR 119
Query: 215 HHKRRV 220
H KRRV
Sbjct: 120 HRKRRV 125
>sp|Q3A6I7|TRMB_PELCD tRNA (guanine-N(7)-)-methyltransferase OS=Pelobacter carbinolicus
(strain DSM 2380 / Gra Bd 1) GN=trmB PE=3 SV=1
Length = 232
Score = 74.7 bits (182), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 76/138 (55%), Gaps = 7/138 (5%)
Query: 104 SSSFTVPAPIPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVK 163
S PA D++ V+ N PL+++IG G G F+ LA P+ NYL ++I K
Sbjct: 16 EESLASPA---DFAAVFGNRN-PLVLEIGCGIGDFVTQLASSAPER-NYLAIDIYNKGCN 70
Query: 164 RAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQK 223
+ +++ L+N+ + A +Q +++ L V I CPDP KK+H KRR+V +
Sbjct: 71 KTCNRLEQARLTNVRVMRIEARYLLEQFLAT--ESLAAVYINCPDPWPKKRHLKRRLVNE 128
Query: 224 PLVDSIIDYLMPGGKVYF 241
+ +++ YL PGG+++F
Sbjct: 129 RFLQTLLHYLQPGGELFF 146
>sp|Q39R75|TRMB_GEOMG tRNA (guanine-N(7)-)-methyltransferase OS=Geobacter metallireducens
(strain GS-15 / ATCC 53774 / DSM 7210) GN=trmB PE=3 SV=2
Length = 211
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 72/143 (50%), Gaps = 11/143 (7%)
Query: 100 VNPLSSSFTVPAPIPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQ 159
+NP + PA DW+ V+ N PL ++IG G G F+ A NP + NY+ ++
Sbjct: 13 LNP--DELSTPA---DWAAVFGNAN-PLALEIGCGIGDFIARTAADNPGT-NYIAIDFYN 65
Query: 160 KLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYP-GPLMLVSILCPDPHFKKKHHKR 218
K + ++ LA+ N+ + A K +V P G L V I CPDP K +H KR
Sbjct: 66 KGCDKTCRRLERLAIPNVRVVRDEAR---KFIVERIPKGSLCAVHINCPDPWPKMRHRKR 122
Query: 219 RVVQKPLVDSIIDYLMPGGKVYF 241
R+V + I +YL PGG YF
Sbjct: 123 RLVNREFAAFIREYLAPGGDFYF 145
>sp|B0UWE3|TRMB_HAES2 tRNA (guanine-N(7)-)-methyltransferase OS=Haemophilus somnus
(strain 2336) GN=trmB PE=3 SV=1
Length = 251
Score = 71.6 bits (174), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 71/126 (56%), Gaps = 4/126 (3%)
Query: 115 DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL 174
D++++Y N T P++++IG G G+ L+ +A +NPD NYLG+E+ V + E +
Sbjct: 66 DFTQIYGN-TNPVILEIGFGMGKSLVEMALQNPDK-NYLGIEVHTPGVGACIAYAVEKQV 123
Query: 175 SNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLM 234
N+ + +A+ + ++ L + + PDP K KHHKRR+VQ V+ I L+
Sbjct: 124 KNLRVICHDATEILQDCIAD--NSLAGLQLFFPDPWHKTKHHKRRIVQPHFVEKIQQKLV 181
Query: 235 PGGKVY 240
P G V+
Sbjct: 182 PNGFVH 187
>sp|Q39IU7|TRMB_BURS3 tRNA (guanine-N(7)-)-methyltransferase OS=Burkholderia sp. (strain
383) GN=trmB PE=3 SV=1
Length = 255
Score = 71.6 bits (174), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 78/146 (53%), Gaps = 6/146 (4%)
Query: 97 RQHVNPLSSSFTVP-AP-IPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLG 154
R+ ++ L F VP AP +PDW+ V+ + P +++IG G G +A P ++LG
Sbjct: 52 RRAMDELGPRFVVPYAPELPDWNAVFGR-SAPRILEIGFGMGASTAEIAANRP-GDDFLG 109
Query: 155 LEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKK 214
+E+ + V + E LSNI + +A + +++ P L V I PDP K +
Sbjct: 110 VEVHEPGVGALLKLIGEQDLSNIRIIQHDAVEVLEHMLA--PESLDGVHIFFPDPWHKAR 167
Query: 215 HHKRRVVQKPLVDSIIDYLMPGGKVY 240
HHKRR++Q PLV ++ L PG ++
Sbjct: 168 HHKRRLIQPPLVAHLVSRLKPGAYIH 193
>sp|Q0I516|TRMB_HAES1 tRNA (guanine-N(7)-)-methyltransferase OS=Haemophilus somnus
(strain 129Pt) GN=trmB PE=3 SV=1
Length = 251
Score = 71.6 bits (174), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 71/126 (56%), Gaps = 4/126 (3%)
Query: 115 DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL 174
D++++Y N T P++++IG G G+ L+ +A +NPD NYLG+E+ V + E +
Sbjct: 66 DFTQIYGN-TNPVILEIGFGMGKSLVEMALQNPDK-NYLGIEVHTPGVGACIAYAVEKQV 123
Query: 175 SNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLM 234
N+ + +A+ + ++ L + + PDP K KHHKRR+VQ V+ I L+
Sbjct: 124 KNLRVICHDATEILQDCIAD--NSLAGLQLFFPDPWHKTKHHKRRIVQPHFVEKIQQKLV 181
Query: 235 PGGKVY 240
P G V+
Sbjct: 182 PNGFVH 187
>sp|Q7VN18|TRMB_HAEDU tRNA (guanine-N(7)-)-methyltransferase OS=Haemophilus ducreyi
(strain 35000HP / ATCC 700724) GN=trmB PE=3 SV=1
Length = 249
Score = 71.6 bits (174), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 70/127 (55%), Gaps = 4/127 (3%)
Query: 115 DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL 174
D+ E++ N P++++IG G GR L+ +A +NPD NY+G+E+ V + E +
Sbjct: 65 DFVEIFGNAN-PVVLEIGFGMGRSLVEMAAQNPDR-NYIGIEVHTPGVGACIAYAVEKQV 122
Query: 175 SNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLM 234
N+ + +A+ + V+ G L + + PDP K KHHKRR+VQ V ++ L
Sbjct: 123 DNLRVICHDATEILRDAVAD--GSLAGLQLYFPDPWQKSKHHKRRIVQTEFVMRLLTKLT 180
Query: 235 PGGKVYF 241
GG ++F
Sbjct: 181 AGGFIHF 187
>sp|Q89A46|TRMB_BUCBP tRNA (guanine-N(7)-)-methyltransferase OS=Buchnera aphidicola
subsp. Baizongia pistaciae (strain Bp) GN=trmB PE=3 SV=1
Length = 242
Score = 71.2 bits (173), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 69/116 (59%), Gaps = 3/116 (2%)
Query: 122 NPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLF 181
N P++++IG G+G FLI +AR+N S N+LG+E+ + ++ + L N+ +F
Sbjct: 58 NNEYPVILEIGFGTGEFLINMARKNLFS-NFLGIEVYIPSILSCLRYIHKYNLPNVKVIF 116
Query: 182 ANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGG 237
+A ++S+ L V IL PDP K++HHKRR++ K L++ I+ L+ GG
Sbjct: 117 YDAVEVISYMISN--NSLSEVYILFPDPWPKRRHHKRRIITKELLEVILKKLVFGG 170
>sp|A1WZP9|TRMB_HALHL tRNA (guanine-N(7)-)-methyltransferase OS=Halorhodospira halophila
(strain DSM 244 / SL1) GN=trmB PE=3 SV=1
Length = 231
Score = 70.9 bits (172), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 67/118 (56%), Gaps = 7/118 (5%)
Query: 126 PLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANAS 185
P ++DIG G G L+ +A +P+ +YLG+E+ + V ++ L N+ A+
Sbjct: 53 PRVLDIGFGDGEALVEMAAADPER-DYLGVEVHRPGVGHCLLCAEQAGLDNLRV----AT 107
Query: 186 VSFKQLVSSY-PGP-LMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241
V +LV + PGP L V I PDP KK+HHKRR++Q +D + + L+PGG ++
Sbjct: 108 VDAVELVRHHLPGPSLETVQIFFPDPWPKKRHHKRRIIQPAFLDLLAERLVPGGALHL 165
>sp|Q74FT5|TRMB_GEOSL tRNA (guanine-N(7)-)-methyltransferase OS=Geobacter sulfurreducens
(strain ATCC 51573 / DSM 12127 / PCA) GN=trmB PE=3 SV=1
Length = 209
Score = 70.9 bits (172), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 73/151 (48%), Gaps = 14/151 (9%)
Query: 98 QHVNPLSSSF-------TVPAPIPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSG 150
Q + P+ S F PA DW+ V+ N PL ++IG G G F+ A +P +
Sbjct: 2 QRIIPIDSPFFLNPDELGTPA---DWTAVFGNDN-PLALEIGCGIGDFIARTALDHPTT- 56
Query: 151 NYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPH 210
N++ ++ K + ++ ++N+ + A A + + G L V I CPDP
Sbjct: 57 NFIAIDYYNKGCLKTCSRLERHGITNVRVVRAEARQFIVERIQK--GSLAAVYINCPDPW 114
Query: 211 FKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241
KK+H KRR+V V I DYL PGG YF
Sbjct: 115 PKKRHRKRRLVNTQFVRFIRDYLAPGGDFYF 145
>sp|A0K594|TRMB_BURCH tRNA (guanine-N(7)-)-methyltransferase OS=Burkholderia cenocepacia
(strain HI2424) GN=trmB PE=3 SV=1
Length = 255
Score = 70.9 bits (172), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 76/146 (52%), Gaps = 6/146 (4%)
Query: 97 RQHVNPLSSSFTVP-AP-IPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLG 154
R+ ++ F VP AP +PDW ++ + P +++IG G G +A P S ++LG
Sbjct: 52 RRALDEFGPRFVVPYAPEMPDWDAIFGR-SAPRILEIGFGMGASTAEIAAHRP-SDDFLG 109
Query: 155 LEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKK 214
+E+ + V + E LSNI + +A + +++ P L V I PDP K +
Sbjct: 110 VEVHEPGVGALLKLIGEQGLSNIRIIQHDAVEVLEHMIA--PASLDGVHIFFPDPWHKAR 167
Query: 215 HHKRRVVQKPLVDSIIDYLMPGGKVY 240
HHKRR++Q PLV + L PG ++
Sbjct: 168 HHKRRLIQPPLVAHLASRLKPGAYLH 193
>sp|Q1BYF4|TRMB_BURCA tRNA (guanine-N(7)-)-methyltransferase OS=Burkholderia cenocepacia
(strain AU 1054) GN=trmB PE=3 SV=1
Length = 255
Score = 70.9 bits (172), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 76/146 (52%), Gaps = 6/146 (4%)
Query: 97 RQHVNPLSSSFTVP-AP-IPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLG 154
R+ ++ F VP AP +PDW ++ + P +++IG G G +A P S ++LG
Sbjct: 52 RRALDEFGPRFVVPYAPEMPDWDAIFGR-SAPRILEIGFGMGASTAEIAAHRP-SDDFLG 109
Query: 155 LEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKK 214
+E+ + V + E LSNI + +A + +++ P L V I PDP K +
Sbjct: 110 VEVHEPGVGALLKLIGEQGLSNIRIIQHDAVEVLEHMIA--PASLDGVHIFFPDPWHKAR 167
Query: 215 HHKRRVVQKPLVDSIIDYLMPGGKVY 240
HHKRR++Q PLV + L PG ++
Sbjct: 168 HHKRRLIQPPLVAHLASRLKPGAYLH 193
>sp|A6VLR7|TRMB_ACTSZ tRNA (guanine-N(7)-)-methyltransferase OS=Actinobacillus
succinogenes (strain ATCC 55618 / 130Z) GN=trmB PE=3
SV=1
Length = 252
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 81/156 (51%), Gaps = 7/156 (4%)
Query: 88 TGELGHARIRQHVNPLSSSFTVPAPIP--DWSEVYKNPTLPLMVDIGSGSGRFLIWLARR 145
TG L + RQ +N S++ + D+ +Y N P++++IG G G+ L+ +A++
Sbjct: 38 TGRLSEYQ-RQMMNDNWSNYGLDYQTEPFDFPAIYGNHN-PVILEIGFGMGKSLVEMAQQ 95
Query: 146 NPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSIL 205
NPD NYLG+E+ V + E + N+ + +A+ + ++ L + +
Sbjct: 96 NPDK-NYLGIEVHTPGVGACLAYALEKGIKNLRVICHDATEILRDCIADRS--LGGLQLF 152
Query: 206 CPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241
PDP K KHHKRR+VQ V ++ L GG ++F
Sbjct: 153 FPDPWHKAKHHKRRIVQPQFVKTVTQKLTSGGFIHF 188
>sp|Q65VT5|TRMB_MANSM tRNA (guanine-N(7)-)-methyltransferase OS=Mannheimia
succiniciproducens (strain MBEL55E) GN=trmB PE=3 SV=2
Length = 249
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 71/126 (56%), Gaps = 4/126 (3%)
Query: 115 DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL 174
D++E+Y N T P++++IG G G+ L+ +A +NP+ NYLG+E+ V + E +
Sbjct: 66 DFAEIYGN-TNPVILEIGFGMGKSLVEMAEQNPER-NYLGIEVHTPGVGACIAYAVEKQV 123
Query: 175 SNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLM 234
N+ + +A+ + ++ L + + PDP K KHHKRR+VQ VD+++ L
Sbjct: 124 KNLRVICHDATEILQDCIAD--DSLGGLQLFFPDPWHKSKHHKRRIVQPNFVDNVMQKLQ 181
Query: 235 PGGKVY 240
G ++
Sbjct: 182 QSGFIH 187
>sp|A4JC58|TRMB_BURVG tRNA (guanine-N(7)-)-methyltransferase OS=Burkholderia
vietnamiensis (strain G4 / LMG 22486) GN=trmB PE=3 SV=1
Length = 255
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 76/146 (52%), Gaps = 6/146 (4%)
Query: 97 RQHVNPLSSSFTVP-AP-IPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLG 154
R+ ++ L F VP AP +PDW V+ + P +++IG G G +A P ++LG
Sbjct: 52 RRAIDELGPRFVVPYAPTLPDWDAVFGR-SAPRILEIGFGMGASTAEIAAHRP-GDDFLG 109
Query: 155 LEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKK 214
+E+ + V + E L+NI + +A + +++ P L V I PDP K +
Sbjct: 110 VEVHEPGVGALLKLIGEQGLTNIRIIQHDAVEVLEHMLA--PESLDGVHIFFPDPWHKAR 167
Query: 215 HHKRRVVQKPLVDSIIDYLMPGGKVY 240
HHKRR++Q PLV + L PG ++
Sbjct: 168 HHKRRLIQPPLVAQLAARLKPGAYLH 193
>sp|A4VXH8|TRMB_STRSY tRNA (guanine-N(7)-)-methyltransferase OS=Streptococcus suis
(strain 05ZYH33) GN=trmB PE=3 SV=1
Length = 212
Score = 68.6 bits (166), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 72/128 (56%), Gaps = 9/128 (7%)
Query: 116 WSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS 175
W+E++ N P+ +++GSG GRF+ +A +NPD NY+G++I+ ++ A V E L
Sbjct: 31 WAEIFGNNN-PIHIEVGSGKGRFVTGMAAQNPDI-NYIGIDIQMTVLSYALDRVLEAGLP 88
Query: 176 NIHFLFANASVSFKQLVSSY--PGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYL 233
NI L + S +++Y P + + + DP KK+H KRR+ K +D+ + L
Sbjct: 89 NIKLLQVDGSS-----LTNYFAPAEIDQLYLNFSDPWPKKRHEKRRLTYKSFLDTYKEIL 143
Query: 234 MPGGKVYF 241
G+++F
Sbjct: 144 PEKGEIHF 151
>sp|A4W3S2|TRMB_STRS2 tRNA (guanine-N(7)-)-methyltransferase OS=Streptococcus suis
(strain 98HAH33) GN=trmB PE=3 SV=1
Length = 212
Score = 68.6 bits (166), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 72/128 (56%), Gaps = 9/128 (7%)
Query: 116 WSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS 175
W+E++ N P+ +++GSG GRF+ +A +NPD NY+G++I+ ++ A V E L
Sbjct: 31 WAEIFGNNN-PIHIEVGSGKGRFVTGMAAQNPDI-NYIGIDIQMTVLSYALDRVLEAGLP 88
Query: 176 NIHFLFANASVSFKQLVSSY--PGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYL 233
NI L + S +++Y P + + + DP KK+H KRR+ K +D+ + L
Sbjct: 89 NIKLLQVDGSS-----LTNYFAPAEIDQLYLNFSDPWPKKRHEKRRLTYKSFLDTYKEIL 143
Query: 234 MPGGKVYF 241
G+++F
Sbjct: 144 PEKGEIHF 151
>sp|Q13V14|TRMB_BURXL tRNA (guanine-N(7)-)-methyltransferase OS=Burkholderia xenovorans
(strain LB400) GN=trmB PE=3 SV=2
Length = 260
Score = 68.6 bits (166), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 74/142 (52%), Gaps = 6/142 (4%)
Query: 97 RQHVNPLSSSFTVP-API-PDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLG 154
R+ ++ L F VP AP PDW+ V+ P +++IG G G +A PD ++LG
Sbjct: 56 RRAMDELGPRFVVPFAPQQPDWNSVFGR-EAPRVLEIGFGMGATTAEIASHRPDE-DFLG 113
Query: 155 LEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKK 214
+E+ + V + E LSNI + +A +Q+++ P L V I PDP K +
Sbjct: 114 VEVHEPGVGALLKLMGEQNLSNIRIIQHDAVEVLEQMIA--PDSLDGVHIFFPDPWHKAR 171
Query: 215 HHKRRVVQKPLVDSIIDYLMPG 236
HHKRR++Q V ++ L PG
Sbjct: 172 HHKRRLIQPKFVALLVSRLKPG 193
>sp|P67503|TRMB_STRA5 tRNA (guanine-N(7)-)-methyltransferase OS=Streptococcus agalactiae
serotype V (strain ATCC BAA-611 / 2603 V/R) GN=trmB PE=3
SV=1
Length = 211
Score = 68.2 bits (165), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 70/128 (54%), Gaps = 9/128 (7%)
Query: 116 WSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS 175
W E++ N P+ +++GSG G F+ +A +NPD NY+G++I+ ++ A V +
Sbjct: 31 WHEIFGNNN-PIHIEVGSGKGAFITGMAEQNPDI-NYIGIDIQLSVLSYALDKVLDSGAK 88
Query: 176 NIHFLFANASVSFKQLVSSY--PGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYL 233
NI L + S +S+Y G + L+ + DP KKKH KRR+ K +D+ D L
Sbjct: 89 NIKLLLVDGSS-----LSNYFDTGEVDLMYLNFSDPWPKKKHEKRRLTYKTFLDTYKDIL 143
Query: 234 MPGGKVYF 241
G+++F
Sbjct: 144 PEQGEIHF 151
>sp|P67502|TRMB_STRA3 tRNA (guanine-N(7)-)-methyltransferase OS=Streptococcus agalactiae
serotype III (strain NEM316) GN=trmB PE=3 SV=1
Length = 211
Score = 68.2 bits (165), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 70/128 (54%), Gaps = 9/128 (7%)
Query: 116 WSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS 175
W E++ N P+ +++GSG G F+ +A +NPD NY+G++I+ ++ A V +
Sbjct: 31 WHEIFGNNN-PIHIEVGSGKGAFITGMAEQNPDI-NYIGIDIQLSVLSYALDKVLDSGAK 88
Query: 176 NIHFLFANASVSFKQLVSSY--PGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYL 233
NI L + S +S+Y G + L+ + DP KKKH KRR+ K +D+ D L
Sbjct: 89 NIKLLLVDGSS-----LSNYFDTGEVDLMYLNFSDPWPKKKHEKRRLTYKTFLDTYKDIL 143
Query: 234 MPGGKVYF 241
G+++F
Sbjct: 144 PEQGEIHF 151
>sp|Q3K307|TRMB_STRA1 tRNA (guanine-N(7)-)-methyltransferase OS=Streptococcus agalactiae
serotype Ia (strain ATCC 27591 / A909 / CDC SS700)
GN=trmB PE=3 SV=1
Length = 211
Score = 68.2 bits (165), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 70/128 (54%), Gaps = 9/128 (7%)
Query: 116 WSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS 175
W E++ N P+ +++GSG G F+ +A +NPD NY+G++I+ ++ A V +
Sbjct: 31 WHEIFGNNN-PIHIEVGSGKGAFITGMAEQNPDI-NYIGIDIQLSVLSYALDKVLDSGAK 88
Query: 176 NIHFLFANASVSFKQLVSSY--PGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYL 233
NI L + S +S+Y G + L+ + DP KKKH KRR+ K +D+ D L
Sbjct: 89 NIKLLLVDGSS-----LSNYFDTGEVDLMYLNFSDPWPKKKHEKRRLTYKTFLDTYKDIL 143
Query: 234 MPGGKVYF 241
G+++F
Sbjct: 144 PEQGEIHF 151
>sp|Q6LML0|TRMB_PHOPR tRNA (guanine-N(7)-)-methyltransferase OS=Photobacterium profundum
GN=trmB PE=3 SV=1
Length = 245
Score = 68.2 bits (165), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 65/127 (51%), Gaps = 4/127 (3%)
Query: 115 DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL 174
DW EVY N P++++IG G G L+ +A+ P+ +++G+E+ V +E L
Sbjct: 61 DWKEVY-NREAPIVLEIGFGMGASLVEMAKHAPEK-DFIGIEVHSPGVGACLMGAEETGL 118
Query: 175 SNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLM 234
+N+ + +A F ++ G L V + PDP K +HHKRR+VQ + + L
Sbjct: 119 TNLRVMCHDAVEVFDYMIPD--GSLETVQLFFPDPWHKTRHHKRRIVQPAFAEMLRKKLK 176
Query: 235 PGGKVYF 241
GG +
Sbjct: 177 IGGTFHM 183
>sp|Q0BHL9|TRMB_BURCM tRNA (guanine-N(7)-)-methyltransferase OS=Burkholderia ambifaria
(strain ATCC BAA-244 / AMMD) GN=trmB PE=3 SV=1
Length = 255
Score = 67.8 bits (164), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 73/146 (50%), Gaps = 6/146 (4%)
Query: 97 RQHVNPLSSSFTVP--APIPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLG 154
R+ ++ F VP A IPDW V+ + P +++IG G G +A P ++LG
Sbjct: 52 RRALDEFGPRFVVPYAAEIPDWDAVFGR-SAPRILEIGFGMGASTAEIAAHRP-GDDFLG 109
Query: 155 LEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKK 214
+E+ + V + E L NI + +A + +++ P L V I PDP K +
Sbjct: 110 VEVHEPGVGALLKLIGEQDLPNIRIIQHDAVEVLEHMLA--PESLDGVHIFFPDPWHKAR 167
Query: 215 HHKRRVVQKPLVDSIIDYLMPGGKVY 240
HHKRR++Q PLV + L PG ++
Sbjct: 168 HHKRRLIQPPLVAHLASRLKPGAYLH 193
>sp|A5UGF0|TRMB_HAEIG tRNA (guanine-N(7)-)-methyltransferase OS=Haemophilus influenzae
(strain PittGG) GN=trmB PE=3 SV=1
Length = 246
Score = 67.4 bits (163), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 69/126 (54%), Gaps = 4/126 (3%)
Query: 115 DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL 174
D++++Y N P++++IG G G+ L+ +A NPD NYLG+E+ V + E +
Sbjct: 63 DFAKIYGNDN-PVVLEIGFGMGKSLVDMAFANPDK-NYLGIEVHTPGVGACIAYAVEKGV 120
Query: 175 SNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLM 234
+N+ + +A+ + ++ G L + + PDP K KHHKRR+VQ V +I L
Sbjct: 121 TNLRVICHDATEILRDSIAD--GTLGGLQLFFPDPWHKAKHHKRRIVQPHFVTQVIQKLS 178
Query: 235 PGGKVY 240
G ++
Sbjct: 179 ENGFIH 184
>sp|Q4QNK0|TRMB_HAEI8 tRNA (guanine-N(7)-)-methyltransferase OS=Haemophilus influenzae
(strain 86-028NP) GN=trmB PE=3 SV=1
Length = 246
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 69/126 (54%), Gaps = 4/126 (3%)
Query: 115 DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL 174
D++++Y N P++++IG G G+ L+ +A NPD NYLG+E+ V + E +
Sbjct: 63 DFAKIYGNDN-PIVLEIGFGMGKSLVDMAFANPDK-NYLGIEVHTPGVGACIAYAVEKGV 120
Query: 175 SNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLM 234
+N+ + +A+ + ++ G L + + PDP K KHHKRR+VQ V +I L
Sbjct: 121 TNLRVICHDATEILRDSIAD--GALGGLQLFFPDPWHKAKHHKRRIVQPHFVTQVIQKLG 178
Query: 235 PGGKVY 240
G ++
Sbjct: 179 KNGFIH 184
>sp|P44648|TRMB_HAEIN tRNA (guanine-N(7)-)-methyltransferase OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=trmB PE=1
SV=1
Length = 246
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 69/126 (54%), Gaps = 4/126 (3%)
Query: 115 DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL 174
D++++Y N P++++IG G G+ L+ +A NPD NYLG+E+ V + E +
Sbjct: 63 DFAKIYGNDN-PVVLEIGFGMGKSLVDMAFANPDK-NYLGIEVHTPGVGACIAYAVEKGV 120
Query: 175 SNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLM 234
+N+ + +A+ + ++ G L + + PDP K KHHKRR+VQ V +I L
Sbjct: 121 TNLRVICHDATEILRDSIAD--GALGGLQLFFPDPWHKAKHHKRRIVQPHFVTQVIQKLG 178
Query: 235 PGGKVY 240
G ++
Sbjct: 179 ENGFIH 184
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.136 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,127,942
Number of Sequences: 539616
Number of extensions: 3513734
Number of successful extensions: 11967
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 187
Number of HSP's that attempted gapping in prelim test: 11078
Number of HSP's gapped (non-prelim): 603
length of query: 241
length of database: 191,569,459
effective HSP length: 114
effective length of query: 127
effective length of database: 130,053,235
effective search space: 16516760845
effective search space used: 16516760845
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 59 (27.3 bits)