Query 026219
Match_columns 241
No_of_seqs 277 out of 2339
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 05:11:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026219.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026219hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02390 Methyltransf_4: Putat 99.9 3.3E-24 7.2E-29 179.1 14.3 125 113-241 7-131 (195)
2 COG0220 Predicted S-adenosylme 99.9 4E-24 8.6E-29 182.0 13.7 125 114-241 38-162 (227)
3 TIGR00091 tRNA (guanine-N(7)-) 99.9 8.8E-23 1.9E-27 170.3 13.8 124 114-241 7-130 (194)
4 PRK14121 tRNA (guanine-N(7)-)- 99.9 7.2E-21 1.6E-25 172.8 14.2 121 115-241 113-233 (390)
5 PRK00121 trmB tRNA (guanine-N( 99.8 5.9E-20 1.3E-24 154.2 13.8 124 114-241 31-154 (202)
6 COG2226 UbiE Methylase involve 99.8 7.1E-20 1.5E-24 156.6 12.2 104 124-241 51-154 (238)
7 PRK01544 bifunctional N5-gluta 99.8 6.4E-20 1.4E-24 173.2 11.7 121 116-241 340-460 (506)
8 PF01209 Ubie_methyltran: ubiE 99.8 8.4E-20 1.8E-24 156.5 11.2 107 122-241 45-151 (233)
9 KOG3115 Methyltransferase-like 99.8 9.6E-19 2.1E-23 143.9 7.3 149 89-240 17-180 (249)
10 PF12847 Methyltransf_18: Meth 99.8 7.2E-18 1.6E-22 127.4 11.5 105 125-241 2-109 (112)
11 PF13847 Methyltransf_31: Meth 99.7 4.5E-17 9.8E-22 130.3 12.2 105 124-241 3-108 (152)
12 PLN02233 ubiquinone biosynthes 99.7 9.3E-17 2E-21 139.9 14.1 105 123-241 72-180 (261)
13 PF08241 Methyltransf_11: Meth 99.7 2.9E-17 6.4E-22 119.4 7.5 95 129-241 1-95 (95)
14 TIGR02752 MenG_heptapren 2-hep 99.7 3E-16 6.5E-21 133.6 13.6 105 123-241 44-149 (231)
15 PRK00107 gidB 16S rRNA methylt 99.7 2.3E-16 5E-21 131.0 12.2 98 125-241 46-143 (187)
16 PLN02244 tocopherol O-methyltr 99.7 2.5E-16 5.5E-21 142.1 12.5 103 124-241 118-221 (340)
17 TIGR02469 CbiT precorrin-6Y C5 99.7 7.9E-16 1.7E-20 117.7 13.3 102 124-241 19-120 (124)
18 PF05175 MTS: Methyltransferas 99.7 7.3E-16 1.6E-20 126.0 11.5 108 124-241 31-138 (170)
19 TIGR00138 gidB 16S rRNA methyl 99.7 8.6E-16 1.9E-20 127.0 11.5 99 124-241 42-140 (181)
20 COG2227 UbiG 2-polyprenyl-3-me 99.7 4.5E-16 9.7E-21 131.9 9.8 129 86-241 26-159 (243)
21 PRK11207 tellurite resistance 99.7 2.6E-15 5.6E-20 125.6 13.7 111 115-240 21-131 (197)
22 PRK14103 trans-aconitate 2-met 99.6 1.2E-15 2.5E-20 132.3 11.6 104 116-241 21-124 (255)
23 PRK11873 arsM arsenite S-adeno 99.6 4.5E-15 9.7E-20 129.6 13.1 105 124-241 77-181 (272)
24 KOG1540 Ubiquinone biosynthesi 99.6 5.4E-15 1.2E-19 125.9 12.6 113 116-241 88-212 (296)
25 PRK11036 putative S-adenosyl-L 99.6 1.9E-15 4E-20 131.1 10.0 103 124-241 44-147 (255)
26 TIGR00080 pimt protein-L-isoas 99.6 6.7E-15 1.5E-19 124.5 12.9 103 120-241 73-175 (215)
27 PRK01683 trans-aconitate 2-met 99.6 4.5E-15 9.8E-20 128.5 11.9 106 116-241 23-128 (258)
28 PF13659 Methyltransf_26: Meth 99.6 5.1E-15 1.1E-19 112.7 10.5 112 125-241 1-113 (117)
29 PRK08287 cobalt-precorrin-6Y C 99.6 1.3E-14 2.9E-19 120.0 13.4 100 123-241 30-129 (187)
30 PRK07402 precorrin-6B methylas 99.6 1.4E-14 3E-19 120.8 13.7 102 123-241 39-140 (196)
31 PLN02396 hexaprenyldihydroxybe 99.6 3.4E-15 7.3E-20 133.6 10.0 102 124-241 131-233 (322)
32 PF13649 Methyltransf_25: Meth 99.6 3E-15 6.6E-20 111.6 8.1 97 128-237 1-101 (101)
33 PRK15451 tRNA cmo(5)U34 methyl 99.6 6.2E-15 1.3E-19 127.4 10.6 102 124-241 56-162 (247)
34 TIGR00477 tehB tellurite resis 99.6 1.4E-14 3E-19 120.9 12.2 102 124-241 30-131 (195)
35 PF08242 Methyltransf_12: Meth 99.6 4.5E-16 9.7E-21 115.5 2.7 99 129-239 1-99 (99)
36 PRK13942 protein-L-isoaspartat 99.6 2E-14 4.4E-19 121.5 13.1 103 120-241 72-174 (212)
37 TIGR00740 methyltransferase, p 99.6 1.4E-14 3E-19 124.3 12.2 104 124-241 53-159 (239)
38 PTZ00098 phosphoethanolamine N 99.6 1.2E-14 2.7E-19 126.7 11.7 110 115-241 43-154 (263)
39 PRK13944 protein-L-isoaspartat 99.6 3.3E-14 7.2E-19 119.6 13.6 99 124-241 72-171 (205)
40 PRK15001 SAM-dependent 23S rib 99.6 3.1E-14 6.7E-19 129.8 14.0 112 120-241 224-338 (378)
41 COG4123 Predicted O-methyltran 99.6 2.4E-14 5.2E-19 122.9 11.7 114 124-241 44-168 (248)
42 smart00828 PKS_MT Methyltransf 99.6 1.8E-14 4E-19 122.0 10.5 100 127-241 2-102 (224)
43 PRK04266 fibrillarin; Provisio 99.6 3.8E-14 8.3E-19 121.0 12.3 104 123-241 71-174 (226)
44 PRK10258 biotin biosynthesis p 99.6 2.3E-14 5E-19 123.7 10.9 101 120-241 38-138 (251)
45 COG2242 CobL Precorrin-6B meth 99.6 6.5E-14 1.4E-18 114.9 12.6 101 123-241 33-133 (187)
46 PRK00377 cbiT cobalt-precorrin 99.6 8.6E-14 1.9E-18 116.3 13.5 103 123-241 39-143 (198)
47 PF02353 CMAS: Mycolic acid cy 99.5 3E-14 6.4E-19 124.9 10.2 103 123-241 61-164 (273)
48 PLN02336 phosphoethanolamine N 99.5 6.4E-14 1.4E-18 131.5 13.1 102 124-241 266-367 (475)
49 COG2230 Cfa Cyclopropane fatty 99.5 7.4E-14 1.6E-18 121.9 12.3 107 119-241 67-174 (283)
50 TIGR03534 RF_mod_PrmC protein- 99.5 1.6E-13 3.5E-18 117.7 14.0 111 124-241 87-215 (251)
51 PRK11088 rrmA 23S rRNA methylt 99.5 6.1E-14 1.3E-18 122.8 11.1 93 124-241 85-179 (272)
52 TIGR02072 BioC biotin biosynth 99.5 7.2E-14 1.6E-18 118.4 11.1 99 125-241 35-133 (240)
53 PRK12335 tellurite resistance 99.5 1.2E-13 2.7E-18 121.8 12.6 102 124-241 120-221 (287)
54 PRK08317 hypothetical protein; 99.5 2.1E-13 4.5E-18 115.4 13.3 104 123-241 18-122 (241)
55 PLN02490 MPBQ/MSBQ methyltrans 99.5 8.8E-14 1.9E-18 125.1 11.5 101 124-241 113-213 (340)
56 PRK06922 hypothetical protein; 99.5 1.1E-13 2.4E-18 132.3 12.0 113 124-241 418-535 (677)
57 PRK15068 tRNA mo(5)U34 methylt 99.5 2.3E-13 5E-18 122.0 12.7 103 123-241 121-224 (322)
58 TIGR03533 L3_gln_methyl protei 99.5 3E-13 6.6E-18 119.3 13.0 110 125-241 122-249 (284)
59 PRK09489 rsmC 16S ribosomal RN 99.5 3.2E-13 6.9E-18 122.0 13.2 110 120-241 192-301 (342)
60 PLN02781 Probable caffeoyl-CoA 99.5 3.2E-13 7E-18 115.9 12.4 106 125-241 69-176 (234)
61 TIGR00537 hemK_rel_arch HemK-r 99.5 3.2E-13 7E-18 110.9 11.8 107 124-241 19-138 (179)
62 KOG1271 Methyltransferases [Ge 99.5 7.1E-14 1.5E-18 113.7 7.6 103 125-241 68-179 (227)
63 TIGR03840 TMPT_Se_Te thiopurin 99.5 1.7E-13 3.6E-18 116.1 9.4 114 115-241 25-150 (213)
64 PRK05785 hypothetical protein; 99.5 2.6E-13 5.7E-18 115.8 10.6 90 125-237 52-141 (226)
65 PRK00216 ubiE ubiquinone/menaq 99.5 7.1E-13 1.5E-17 112.5 13.1 105 124-241 51-156 (239)
66 COG2813 RsmC 16S RNA G1207 met 99.5 5.2E-13 1.1E-17 117.0 12.4 113 118-241 152-264 (300)
67 PRK00312 pcm protein-L-isoaspa 99.5 7.2E-13 1.6E-17 111.7 12.8 100 120-241 74-173 (212)
68 COG4106 Tam Trans-aconitate me 99.5 1.3E-13 2.7E-18 115.0 7.8 105 116-240 22-126 (257)
69 TIGR01934 MenG_MenH_UbiE ubiqu 99.5 9.4E-13 2E-17 110.6 13.2 103 124-241 39-141 (223)
70 PLN03075 nicotianamine synthas 99.5 9.6E-13 2.1E-17 116.0 13.1 105 124-241 123-231 (296)
71 PRK11805 N5-glutamine S-adenos 99.5 7.1E-13 1.5E-17 118.1 12.3 109 126-241 135-261 (307)
72 PRK14967 putative methyltransf 99.5 1.1E-12 2.4E-17 111.6 12.7 109 124-241 36-157 (223)
73 TIGR00536 hemK_fam HemK family 99.5 8.5E-13 1.8E-17 116.3 12.3 109 126-241 116-242 (284)
74 PRK14968 putative methyltransf 99.4 1.5E-12 3.2E-17 106.8 12.7 109 124-241 23-146 (188)
75 TIGR00452 methyltransferase, p 99.4 1E-12 2.2E-17 117.3 12.4 104 122-241 119-223 (314)
76 PRK13943 protein-L-isoaspartat 99.4 1.4E-12 3E-17 116.8 13.2 99 124-241 80-178 (322)
77 PRK04457 spermidine synthase; 99.4 8.8E-13 1.9E-17 115.0 11.5 109 124-241 66-175 (262)
78 PF01596 Methyltransf_3: O-met 99.4 1.1E-12 2.4E-17 110.4 11.4 106 125-241 46-153 (205)
79 TIGR02716 C20_methyl_CrtF C-20 99.4 2E-12 4.3E-17 114.9 13.5 102 124-241 149-252 (306)
80 TIGR00406 prmA ribosomal prote 99.4 1.7E-12 3.7E-17 114.6 12.9 98 124-241 159-257 (288)
81 COG2518 Pcm Protein-L-isoaspar 99.4 8E-13 1.7E-17 110.5 10.1 107 113-241 61-167 (209)
82 TIGR01177 conserved hypothetic 99.4 1E-12 2.2E-17 118.1 11.4 110 124-241 182-292 (329)
83 PF03848 TehB: Tellurite resis 99.4 1.2E-12 2.6E-17 108.8 10.6 102 124-241 30-131 (192)
84 PRK09328 N5-glutamine S-adenos 99.4 2.3E-12 5.1E-17 112.3 13.1 111 124-241 108-236 (275)
85 PRK13255 thiopurine S-methyltr 99.4 2.8E-13 6E-18 115.2 6.9 109 115-240 28-152 (218)
86 PRK14966 unknown domain/N5-glu 99.4 2E-12 4.3E-17 118.7 12.7 111 125-241 252-379 (423)
87 TIGR00446 nop2p NOL1/NOP2/sun 99.4 1.7E-12 3.7E-17 113.3 11.8 112 124-240 71-196 (264)
88 PF01135 PCMT: Protein-L-isoas 99.4 1.3E-12 2.9E-17 110.3 10.0 106 117-241 65-170 (209)
89 TIGR03704 PrmC_rel_meth putati 99.4 2.5E-12 5.5E-17 111.5 12.0 110 125-241 87-214 (251)
90 COG2890 HemK Methylase of poly 99.4 2.2E-12 4.8E-17 113.5 11.8 107 127-241 113-236 (280)
91 PRK14901 16S rRNA methyltransf 99.4 3.3E-12 7.2E-17 118.9 13.5 117 123-240 251-381 (434)
92 PF13489 Methyltransf_23: Meth 99.4 1.5E-12 3.2E-17 103.7 9.7 94 122-241 20-113 (161)
93 PRK00517 prmA ribosomal protei 99.4 1.6E-12 3.4E-17 112.6 10.4 92 124-241 119-211 (250)
94 KOG1270 Methyltransferases [Co 99.4 3.3E-13 7.1E-18 115.5 5.5 98 125-241 90-193 (282)
95 COG2519 GCD14 tRNA(1-methylade 99.4 5.4E-12 1.2E-16 107.9 12.7 100 123-241 93-193 (256)
96 cd02440 AdoMet_MTases S-adenos 99.4 6.3E-12 1.4E-16 90.9 11.2 101 127-241 1-102 (107)
97 PRK00811 spermidine synthase; 99.4 4E-12 8.7E-17 112.1 12.0 110 123-241 75-189 (283)
98 PLN02476 O-methyltransferase 99.4 5.7E-12 1.2E-16 110.4 12.4 106 125-241 119-226 (278)
99 KOG4300 Predicted methyltransf 99.4 1.8E-12 3.8E-17 107.5 8.5 100 125-241 77-180 (252)
100 TIGR03438 probable methyltrans 99.4 8E-12 1.7E-16 111.0 12.9 110 124-241 63-175 (301)
101 PRK01544 bifunctional N5-gluta 99.4 4.7E-12 1E-16 119.9 12.0 110 125-241 139-267 (506)
102 PTZ00146 fibrillarin; Provisio 99.4 7E-12 1.5E-16 110.2 12.2 104 124-241 132-235 (293)
103 PRK14902 16S rRNA methyltransf 99.4 7.3E-12 1.6E-16 116.9 13.0 112 124-240 250-376 (444)
104 PRK14904 16S rRNA methyltransf 99.4 8.4E-12 1.8E-16 116.6 13.2 112 124-241 250-375 (445)
105 PRK14903 16S rRNA methyltransf 99.4 7.8E-12 1.7E-16 116.3 12.8 114 124-241 237-364 (431)
106 smart00138 MeTrc Methyltransfe 99.4 3.2E-12 6.9E-17 111.6 9.5 106 125-241 100-240 (264)
107 PLN02336 phosphoethanolamine N 99.4 5.1E-12 1.1E-16 118.7 11.5 110 118-241 31-140 (475)
108 PRK11705 cyclopropane fatty ac 99.4 6.2E-12 1.3E-16 115.3 11.7 100 123-241 166-265 (383)
109 PRK11188 rrmJ 23S rRNA methylt 99.4 3.9E-12 8.3E-17 107.5 9.5 107 124-241 51-163 (209)
110 COG4122 Predicted O-methyltran 99.4 1.3E-11 2.7E-16 104.5 12.4 103 125-241 60-164 (219)
111 COG2264 PrmA Ribosomal protein 99.3 4E-12 8.8E-17 111.9 9.7 107 114-241 153-261 (300)
112 PRK10901 16S rRNA methyltransf 99.3 1.5E-11 3.3E-16 114.3 13.3 114 123-241 243-370 (427)
113 TIGR03587 Pse_Me-ase pseudamin 99.3 1E-11 2.3E-16 104.4 11.1 97 124-240 43-139 (204)
114 PF05401 NodS: Nodulation prot 99.3 3.2E-12 7E-17 105.8 7.4 106 120-241 39-144 (201)
115 TIGR01983 UbiG ubiquinone bios 99.3 1.2E-11 2.5E-16 104.6 10.8 103 124-241 45-147 (224)
116 PF06325 PrmA: Ribosomal prote 99.3 8.5E-12 1.8E-16 110.3 9.5 105 115-241 153-257 (295)
117 TIGR02021 BchM-ChlM magnesium 99.3 1.9E-11 4.1E-16 103.5 10.7 100 124-240 55-155 (219)
118 PRK07580 Mg-protoporphyrin IX 99.3 2.8E-11 6E-16 102.7 11.6 100 123-239 62-162 (230)
119 PRK15128 23S rRNA m(5)C1962 me 99.3 3.7E-11 8E-16 110.5 13.1 113 125-241 221-337 (396)
120 PF08704 GCD14: tRNA methyltra 99.3 2.7E-11 5.8E-16 104.6 11.3 101 123-240 39-143 (247)
121 PLN02366 spermidine synthase 99.3 4E-11 8.7E-16 106.8 12.3 110 123-240 90-203 (308)
122 PRK10909 rsmD 16S rRNA m(2)G96 99.3 5.7E-11 1.2E-15 99.6 12.5 103 124-241 53-157 (199)
123 PRK05134 bifunctional 3-demeth 99.3 3E-11 6.4E-16 103.0 10.8 102 124-241 48-149 (233)
124 TIGR00438 rrmJ cell division p 99.3 2E-11 4.4E-16 101.0 9.5 106 124-241 32-144 (188)
125 KOG2361 Predicted methyltransf 99.3 8.8E-12 1.9E-16 105.6 7.1 104 127-241 74-181 (264)
126 PRK06202 hypothetical protein; 99.3 2.8E-11 6.1E-16 103.4 10.2 96 124-234 60-159 (232)
127 PRK01581 speE spermidine synth 99.3 3.2E-11 7E-16 108.8 10.9 111 123-241 149-266 (374)
128 PRK11783 rlmL 23S rRNA m(2)G24 99.3 4.5E-11 9.7E-16 117.4 12.7 110 125-241 539-654 (702)
129 PLN02589 caffeoyl-CoA O-methyl 99.3 7E-11 1.5E-15 102.1 12.3 106 125-241 80-188 (247)
130 TIGR00563 rsmB ribosomal RNA s 99.3 8.5E-11 1.8E-15 109.2 13.5 115 123-241 237-366 (426)
131 TIGR00417 speE spermidine synt 99.3 8.6E-11 1.9E-15 102.9 12.8 110 123-241 71-184 (270)
132 PRK13168 rumA 23S rRNA m(5)U19 99.3 6.4E-11 1.4E-15 110.6 12.4 102 124-241 297-398 (443)
133 COG2263 Predicted RNA methylas 99.3 6E-11 1.3E-15 97.4 10.7 91 106-207 23-117 (198)
134 PHA03411 putative methyltransf 99.2 7.3E-11 1.6E-15 102.9 11.2 105 125-241 65-181 (279)
135 PRK03612 spermidine synthase; 99.2 5.9E-11 1.3E-15 112.9 11.5 111 123-241 296-413 (521)
136 PLN02672 methionine S-methyltr 99.2 1E-10 2.2E-15 118.1 12.9 112 125-241 119-276 (1082)
137 smart00650 rADc Ribosomal RNA 99.2 1.9E-10 4.2E-15 93.6 11.6 97 124-241 13-111 (169)
138 PRK03522 rumB 23S rRNA methylu 99.2 1.5E-10 3.2E-15 103.5 11.3 99 125-241 174-272 (315)
139 TIGR00479 rumA 23S rRNA (uraci 99.2 2E-10 4.3E-15 106.9 12.2 103 124-241 292-394 (431)
140 PLN02585 magnesium protoporphy 99.2 2.4E-10 5.3E-15 102.1 11.9 70 124-204 144-218 (315)
141 PRK13256 thiopurine S-methyltr 99.2 9.8E-11 2.1E-15 99.8 8.0 112 115-241 34-161 (226)
142 PF07021 MetW: Methionine bios 99.2 1.1E-10 2.3E-15 96.5 7.7 90 125-234 14-103 (193)
143 PHA03412 putative methyltransf 99.1 2.5E-10 5.5E-15 97.5 10.1 103 125-239 50-159 (241)
144 KOG3010 Methyltransferase [Gen 99.1 6.9E-11 1.5E-15 100.2 5.7 98 126-240 35-134 (261)
145 TIGR02085 meth_trns_rumB 23S r 99.1 5.2E-10 1.1E-14 102.4 11.4 99 125-241 234-332 (374)
146 PF08003 Methyltransf_9: Prote 99.1 9.4E-10 2E-14 96.7 12.2 111 115-241 103-217 (315)
147 PF02475 Met_10: Met-10+ like- 99.1 4.7E-10 1E-14 94.1 9.6 99 124-241 101-200 (200)
148 KOG2904 Predicted methyltransf 99.1 8.3E-10 1.8E-14 95.3 10.9 116 125-241 149-283 (328)
149 TIGR02081 metW methionine bios 99.1 4.3E-10 9.3E-15 93.5 8.4 92 125-236 14-105 (194)
150 KOG3191 Predicted N6-DNA-methy 99.1 8.4E-10 1.8E-14 90.0 9.2 111 124-241 43-166 (209)
151 PF01170 UPF0020: Putative RNA 99.1 1.4E-09 3E-14 89.8 10.6 109 124-238 28-146 (179)
152 PF03291 Pox_MCEL: mRNA cappin 99.1 7.5E-10 1.6E-14 99.6 9.3 112 124-241 62-184 (331)
153 KOG2899 Predicted methyltransf 99.1 9.2E-10 2E-14 93.5 9.2 56 115-171 47-104 (288)
154 PRK05031 tRNA (uracil-5-)-meth 99.1 2.2E-09 4.9E-14 97.8 12.5 101 125-241 207-318 (362)
155 TIGR00095 RNA methyltransferas 99.1 3.2E-09 6.9E-14 88.4 12.3 106 124-241 49-157 (189)
156 PLN02232 ubiquinone biosynthes 99.0 5.2E-10 1.1E-14 90.5 7.4 76 153-241 1-79 (160)
157 KOG1541 Predicted protein carb 99.0 5.3E-10 1.2E-14 93.8 7.6 102 124-241 50-158 (270)
158 TIGR02143 trmA_only tRNA (urac 99.0 2.7E-09 5.8E-14 97.0 12.6 100 126-241 199-309 (353)
159 PRK11933 yebU rRNA (cytosine-C 99.0 2E-09 4.4E-14 100.9 12.0 113 124-240 113-239 (470)
160 PRK04338 N(2),N(2)-dimethylgua 99.0 1.9E-09 4.1E-14 98.8 11.5 99 125-241 58-156 (382)
161 KOG1663 O-methyltransferase [S 99.0 5.4E-09 1.2E-13 88.3 12.1 106 125-241 74-181 (237)
162 KOG1499 Protein arginine N-met 99.0 3.1E-09 6.7E-14 94.7 10.2 100 124-240 60-164 (346)
163 PLN02823 spermine synthase 99.0 4.3E-09 9.4E-14 94.8 11.3 112 123-241 102-218 (336)
164 PF05724 TPMT: Thiopurine S-me 99.0 3.7E-10 8E-15 96.0 3.5 112 113-240 26-152 (218)
165 PF00891 Methyltransf_2: O-met 98.9 9.1E-09 2E-13 88.3 11.1 96 123-241 99-197 (241)
166 PRK11727 23S rRNA mA1618 methy 98.9 1.1E-08 2.4E-13 91.5 10.7 83 124-208 114-199 (321)
167 PF06080 DUF938: Protein of un 98.9 6.8E-09 1.5E-13 86.8 8.5 105 127-241 28-139 (204)
168 COG2521 Predicted archaeal met 98.9 1.9E-09 4.1E-14 91.2 4.3 107 124-240 134-242 (287)
169 KOG1975 mRNA cap methyltransfe 98.9 1.2E-08 2.5E-13 90.1 9.3 115 119-240 113-234 (389)
170 COG2265 TrmA SAM-dependent met 98.9 1.7E-08 3.8E-13 93.7 11.0 102 124-241 293-394 (432)
171 PF10672 Methyltrans_SAM: S-ad 98.9 2.2E-08 4.8E-13 88.2 10.9 119 115-241 116-236 (286)
172 COG1041 Predicted DNA modifica 98.9 1.2E-08 2.6E-13 91.3 9.3 108 124-241 197-308 (347)
173 PRK00274 ksgA 16S ribosomal RN 98.8 1.2E-08 2.7E-13 89.4 9.0 58 123-186 41-98 (272)
174 PF03602 Cons_hypoth95: Conser 98.8 2.8E-08 6.2E-13 82.3 10.3 107 124-241 42-151 (183)
175 PTZ00338 dimethyladenosine tra 98.8 2.2E-08 4.7E-13 88.8 9.9 75 123-207 35-110 (294)
176 PRK14896 ksgA 16S ribosomal RN 98.8 2E-08 4.4E-13 87.3 9.6 74 123-208 28-101 (258)
177 KOG1331 Predicted methyltransf 98.8 1.5E-09 3.3E-14 94.2 1.6 133 77-241 7-141 (293)
178 COG1092 Predicted SAM-dependen 98.8 3.4E-08 7.5E-13 90.4 10.6 113 125-241 218-334 (393)
179 PF01564 Spermine_synth: Sperm 98.8 4E-08 8.6E-13 85.1 10.1 112 121-241 73-189 (246)
180 PF02527 GidB: rRNA small subu 98.8 7.5E-08 1.6E-12 79.8 11.0 96 127-241 51-146 (184)
181 TIGR00755 ksgA dimethyladenosi 98.8 7.1E-08 1.5E-12 83.6 11.2 59 123-186 28-86 (253)
182 COG4976 Predicted methyltransf 98.8 1.4E-09 3.1E-14 91.7 0.6 98 125-241 126-223 (287)
183 TIGR00308 TRM1 tRNA(guanine-26 98.8 7.2E-08 1.6E-12 88.2 11.5 100 126-241 46-145 (374)
184 KOG3420 Predicted RNA methylas 98.8 1.2E-08 2.6E-13 80.5 5.4 81 120-208 44-124 (185)
185 PF09445 Methyltransf_15: RNA 98.8 2.2E-08 4.7E-13 81.2 6.9 76 127-207 2-78 (163)
186 PF05185 PRMT5: PRMT5 arginine 98.8 5E-08 1.1E-12 91.1 10.3 103 125-240 187-294 (448)
187 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.7 2E-07 4.3E-12 82.3 12.8 116 122-240 83-216 (283)
188 COG2520 Predicted methyltransf 98.7 7.4E-08 1.6E-12 86.6 9.6 99 124-241 188-287 (341)
189 PF10294 Methyltransf_16: Puta 98.7 6.3E-08 1.4E-12 79.4 8.2 106 124-241 45-154 (173)
190 COG0421 SpeE Spermidine syntha 98.7 1.7E-07 3.6E-12 82.6 11.2 110 122-240 74-187 (282)
191 PRK00050 16S rRNA m(4)C1402 me 98.7 1.5E-07 3.3E-12 83.4 10.9 89 115-206 10-98 (296)
192 KOG1661 Protein-L-isoaspartate 98.7 9.6E-08 2.1E-12 79.7 8.8 99 124-241 82-191 (237)
193 KOG1500 Protein arginine N-met 98.7 8.6E-08 1.9E-12 85.1 8.9 99 124-240 177-279 (517)
194 KOG2187 tRNA uracil-5-methyltr 98.7 6.5E-08 1.4E-12 90.0 8.4 71 120-193 379-449 (534)
195 COG0144 Sun tRNA and rRNA cyto 98.7 2.7E-07 5.9E-12 83.9 12.4 115 123-240 155-285 (355)
196 TIGR00478 tly hemolysin TlyA f 98.6 8.7E-08 1.9E-12 82.0 7.3 91 124-240 75-168 (228)
197 PF05958 tRNA_U5-meth_tr: tRNA 98.6 8E-08 1.7E-12 87.3 7.3 59 125-186 197-255 (352)
198 PF05219 DREV: DREV methyltran 98.6 3.7E-07 8E-12 78.8 9.6 92 124-241 94-186 (265)
199 TIGR01444 fkbM_fam methyltrans 98.6 2.7E-07 5.9E-12 72.4 8.1 59 127-186 1-59 (143)
200 COG0742 N6-adenine-specific me 98.6 1.2E-06 2.7E-11 72.3 12.0 108 123-241 42-152 (187)
201 PRK04148 hypothetical protein; 98.5 6.7E-07 1.5E-11 70.2 9.6 74 122-209 14-88 (134)
202 PF12147 Methyltransf_20: Puta 98.5 1.1E-06 2.4E-11 76.9 11.3 105 124-240 135-246 (311)
203 COG3963 Phospholipid N-methylt 98.5 1.2E-06 2.6E-11 70.8 10.4 105 124-240 48-153 (194)
204 PF05148 Methyltransf_8: Hypot 98.5 2.8E-07 6.1E-12 77.2 6.0 83 123-241 71-156 (219)
205 KOG2915 tRNA(1-methyladenosine 98.5 2.1E-06 4.6E-11 74.4 11.4 99 123-237 104-203 (314)
206 KOG3045 Predicted RNA methylas 98.4 4.9E-07 1.1E-11 77.8 6.9 84 123-241 179-262 (325)
207 TIGR03439 methyl_EasF probable 98.4 4.9E-06 1.1E-10 74.6 11.7 109 124-241 76-195 (319)
208 PF13578 Methyltransf_24: Meth 98.4 4.8E-07 1E-11 67.7 4.5 100 129-241 1-103 (106)
209 COG0357 GidB Predicted S-adeno 98.4 2.6E-06 5.7E-11 72.1 9.3 97 125-240 68-165 (215)
210 COG0030 KsgA Dimethyladenosine 98.3 2.4E-06 5.2E-11 74.2 8.8 74 124-207 30-104 (259)
211 PF01739 CheR: CheR methyltran 98.3 2.8E-06 6.1E-11 71.1 8.9 107 124-241 31-173 (196)
212 KOG2730 Methylase [General fun 98.3 7.3E-07 1.6E-11 75.0 5.0 65 124-191 94-159 (263)
213 PRK11783 rlmL 23S rRNA m(2)G24 98.3 4.6E-06 1E-10 82.3 11.5 80 125-207 191-312 (702)
214 PF01728 FtsJ: FtsJ-like methy 98.3 1.1E-06 2.3E-11 72.1 6.0 105 124-241 23-137 (181)
215 PF02384 N6_Mtase: N-6 DNA Met 98.3 3.5E-06 7.5E-11 75.0 9.7 115 123-241 45-181 (311)
216 PRK10611 chemotaxis methyltran 98.3 1.7E-06 3.7E-11 76.4 7.2 106 125-241 116-260 (287)
217 TIGR02987 met_A_Alw26 type II 98.3 3E-06 6.5E-11 80.9 9.3 83 125-207 32-121 (524)
218 PF05891 Methyltransf_PK: AdoM 98.3 2.3E-06 4.9E-11 72.2 6.9 105 124-241 55-159 (218)
219 PF01269 Fibrillarin: Fibrilla 98.3 1.7E-05 3.6E-10 67.2 12.0 104 124-241 73-176 (229)
220 COG0500 SmtA SAM-dependent met 98.3 1.8E-05 3.9E-10 59.4 11.2 101 128-241 52-153 (257)
221 COG0116 Predicted N6-adenine-s 98.2 1.2E-05 2.6E-10 73.1 10.7 110 125-241 192-342 (381)
222 PF08123 DOT1: Histone methyla 98.2 1.7E-05 3.7E-10 66.9 10.5 111 116-240 34-155 (205)
223 PF03141 Methyltransf_29: Puta 98.2 9.8E-07 2.1E-11 82.2 2.4 95 124-241 117-217 (506)
224 COG4262 Predicted spermidine s 98.1 4.5E-05 9.7E-10 68.8 11.8 109 125-241 290-405 (508)
225 COG4076 Predicted RNA methylas 98.1 4E-06 8.7E-11 69.1 4.7 99 125-240 33-132 (252)
226 KOG2940 Predicted methyltransf 98.1 3.3E-06 7.1E-11 71.7 4.1 100 124-240 72-171 (325)
227 KOG1122 tRNA and rRNA cytosine 98.1 2.4E-05 5.3E-10 71.5 9.9 115 123-240 240-368 (460)
228 PRK00536 speE spermidine synth 98.1 4.7E-05 1E-09 66.4 11.2 97 120-240 68-168 (262)
229 PF13679 Methyltransf_32: Meth 98.0 2.3E-05 5E-10 61.9 8.0 62 124-186 25-93 (141)
230 KOG1269 SAM-dependent methyltr 98.0 8.9E-06 1.9E-10 74.1 6.3 101 125-240 111-212 (364)
231 COG1352 CheR Methylase of chem 98.0 2.2E-05 4.7E-10 68.7 8.3 101 125-241 97-239 (268)
232 KOG0820 Ribosomal RNA adenine 98.0 2E-05 4.4E-10 68.4 7.6 60 124-186 58-118 (315)
233 TIGR00006 S-adenosyl-methyltra 98.0 0.0001 2.2E-09 65.7 11.5 89 116-206 12-100 (305)
234 COG0293 FtsJ 23S rRNA methylas 98.0 5.3E-05 1.1E-09 63.6 9.1 106 125-241 46-157 (205)
235 PF06962 rRNA_methylase: Putat 97.9 4.3E-05 9.4E-10 60.4 7.7 88 151-241 1-90 (140)
236 PF04816 DUF633: Family of unk 97.9 5.8E-05 1.3E-09 63.6 8.6 71 128-205 1-73 (205)
237 KOG1709 Guanidinoacetate methy 97.9 7.2E-05 1.6E-09 63.0 8.4 103 123-240 100-203 (271)
238 COG1889 NOP1 Fibrillarin-like 97.9 0.00014 3.1E-09 60.6 9.9 104 123-241 75-178 (231)
239 PF00398 RrnaAD: Ribosomal RNA 97.8 7.4E-05 1.6E-09 65.1 7.8 58 124-186 30-87 (262)
240 PF05971 Methyltransf_10: Prot 97.8 8E-05 1.7E-09 66.0 8.0 80 125-207 103-186 (299)
241 PF03059 NAS: Nicotianamine sy 97.7 0.00024 5.1E-09 62.5 9.6 103 126-241 122-228 (276)
242 PF09243 Rsm22: Mitochondrial 97.7 0.00026 5.7E-09 62.2 9.8 48 125-172 34-81 (274)
243 KOG3178 Hydroxyindole-O-methyl 97.6 0.00028 6E-09 63.4 8.7 95 125-241 178-273 (342)
244 PRK11760 putative 23S rRNA C24 97.6 0.00037 8E-09 62.8 8.8 69 124-207 211-279 (357)
245 PRK10742 putative methyltransf 97.6 0.00084 1.8E-08 58.0 10.6 79 126-211 90-177 (250)
246 COG3897 Predicted methyltransf 97.6 0.00019 4.1E-09 59.7 6.1 70 124-204 79-148 (218)
247 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.4 0.00013 2.8E-09 63.4 3.9 110 124-241 56-197 (256)
248 PF07942 N2227: N2227-like pro 97.4 0.0011 2.4E-08 58.1 9.4 101 124-240 56-199 (270)
249 PF01795 Methyltransf_5: MraW 97.4 0.00066 1.4E-08 60.5 8.0 90 115-206 11-101 (310)
250 PF02005 TRM: N2,N2-dimethylgu 97.4 0.0011 2.4E-08 60.9 9.4 100 125-241 50-152 (377)
251 PF07091 FmrO: Ribosomal RNA m 97.3 0.001 2.2E-08 57.5 7.6 61 124-186 105-165 (251)
252 COG0275 Predicted S-adenosylme 97.2 0.0043 9.2E-08 54.9 10.8 87 117-204 16-102 (314)
253 KOG4589 Cell division protein 97.1 0.0026 5.5E-08 52.7 8.1 104 125-240 70-181 (232)
254 PF10354 DUF2431: Domain of un 97.1 0.0024 5.1E-08 52.1 7.7 110 131-241 3-123 (166)
255 COG1189 Predicted rRNA methyla 97.1 0.0029 6.3E-08 54.2 8.5 98 122-240 77-175 (245)
256 COG2384 Predicted SAM-dependen 97.1 0.0023 4.9E-08 54.2 7.6 75 125-205 17-92 (226)
257 COG1867 TRM1 N2,N2-dimethylgua 97.0 0.0046 9.9E-08 56.1 9.4 99 125-241 53-152 (380)
258 KOG2352 Predicted spermine/spe 97.0 0.0041 8.9E-08 58.2 9.3 99 127-240 51-158 (482)
259 KOG3987 Uncharacterized conser 96.9 0.00015 3.3E-09 60.8 -0.7 91 125-241 113-205 (288)
260 COG5459 Predicted rRNA methyla 96.8 0.0024 5.2E-08 57.6 5.2 107 124-241 113-223 (484)
261 PF01861 DUF43: Protein of unk 96.8 0.039 8.4E-07 47.5 12.4 111 115-240 35-146 (243)
262 PRK01747 mnmC bifunctional tRN 96.7 0.0079 1.7E-07 59.1 9.4 107 125-240 58-203 (662)
263 PF04672 Methyltransf_19: S-ad 96.7 0.0049 1.1E-07 53.8 6.8 104 125-241 69-188 (267)
264 KOG1501 Arginine N-methyltrans 96.6 0.0048 1E-07 57.2 5.9 54 126-181 68-122 (636)
265 COG0286 HsdM Type I restrictio 96.5 0.02 4.4E-07 54.4 9.9 115 124-239 186-322 (489)
266 COG4798 Predicted methyltransf 96.5 0.0096 2.1E-07 49.7 6.6 110 123-241 47-164 (238)
267 PF04989 CmcI: Cephalosporin h 96.4 0.012 2.6E-07 49.6 7.2 105 125-241 33-145 (206)
268 PRK11524 putative methyltransf 96.4 0.0075 1.6E-07 53.2 6.2 46 123-171 207-252 (284)
269 KOG4058 Uncharacterized conser 96.4 0.014 3E-07 46.7 7.0 66 119-186 67-133 (199)
270 PHA01634 hypothetical protein 96.4 0.0087 1.9E-07 46.6 5.6 47 124-172 28-74 (156)
271 KOG1562 Spermidine synthase [A 96.4 0.021 4.6E-07 50.5 8.6 110 123-240 120-233 (337)
272 PF12692 Methyltransf_17: S-ad 96.3 0.006 1.3E-07 48.6 4.3 113 115-240 19-131 (160)
273 KOG1596 Fibrillarin and relate 96.3 0.015 3.3E-07 50.0 7.0 100 124-241 156-259 (317)
274 PF11968 DUF3321: Putative met 96.3 0.0064 1.4E-07 51.4 4.7 83 126-238 53-139 (219)
275 KOG2198 tRNA cytosine-5-methyl 96.2 0.025 5.5E-07 51.3 8.5 116 124-240 155-293 (375)
276 PRK13699 putative methylase; P 96.1 0.017 3.6E-07 49.4 6.7 49 120-172 160-208 (227)
277 PF11599 AviRa: RRNA methyltra 96.1 0.069 1.5E-06 45.3 9.9 112 124-239 51-210 (246)
278 cd08283 FDH_like_1 Glutathione 96.1 0.035 7.7E-07 50.7 8.9 44 124-168 184-228 (386)
279 PF01555 N6_N4_Mtase: DNA meth 95.9 0.0092 2E-07 49.6 4.0 47 117-167 185-231 (231)
280 PF07757 AdoMet_MTase: Predict 95.9 0.0069 1.5E-07 45.7 2.7 43 115-160 49-91 (112)
281 KOG3201 Uncharacterized conser 95.8 0.011 2.4E-07 47.9 3.8 104 125-240 30-137 (201)
282 KOG1099 SAM-dependent methyltr 95.8 0.023 4.9E-07 48.6 5.6 104 125-240 42-160 (294)
283 KOG1227 Putative methyltransfe 95.7 0.0056 1.2E-07 54.1 1.8 76 124-206 194-270 (351)
284 COG1063 Tdh Threonine dehydrog 95.7 0.075 1.6E-06 48.2 9.2 97 125-241 169-267 (350)
285 PF00107 ADH_zinc_N: Zinc-bind 95.6 0.046 1E-06 41.6 6.5 86 134-241 1-87 (130)
286 KOG2798 Putative trehalase [Ca 95.5 0.036 7.9E-07 49.4 6.2 36 125-163 151-186 (369)
287 KOG2352 Predicted spermine/spe 95.4 0.024 5.1E-07 53.2 4.9 115 125-241 296-414 (482)
288 KOG1253 tRNA methyltransferase 95.4 0.02 4.3E-07 53.8 4.3 105 124-241 109-214 (525)
289 COG1064 AdhP Zn-dependent alco 95.1 0.11 2.4E-06 47.0 8.3 91 124-241 166-257 (339)
290 KOG2671 Putative RNA methylase 95.0 0.031 6.8E-07 50.4 4.4 111 124-241 208-352 (421)
291 PF04445 SAM_MT: Putative SAM- 94.9 0.078 1.7E-06 45.6 6.2 73 126-205 77-158 (234)
292 COG1565 Uncharacterized conser 94.8 0.11 2.4E-06 47.3 7.3 93 73-171 20-131 (370)
293 PRK09880 L-idonate 5-dehydroge 94.6 0.23 5.1E-06 44.4 8.9 95 124-241 169-264 (343)
294 cd00315 Cyt_C5_DNA_methylase C 94.5 0.075 1.6E-06 46.6 5.5 71 127-208 2-72 (275)
295 PF02254 TrkA_N: TrkA-N domain 94.4 0.26 5.6E-06 36.8 7.5 68 133-208 4-72 (116)
296 cd08254 hydroxyacyl_CoA_DH 6-h 94.1 0.54 1.2E-05 41.3 10.2 95 124-240 165-260 (338)
297 PF05711 TylF: Macrocin-O-meth 94.0 0.12 2.5E-06 44.9 5.5 103 125-241 75-210 (248)
298 PF03141 Methyltransf_29: Puta 94.0 0.045 9.6E-07 51.7 3.0 96 125-241 366-465 (506)
299 PLN02668 indole-3-acetate carb 94.0 0.45 9.8E-06 43.9 9.5 18 125-142 64-81 (386)
300 cd08237 ribitol-5-phosphate_DH 93.8 0.41 8.8E-06 42.9 8.9 90 124-241 163-254 (341)
301 KOG0024 Sorbitol dehydrogenase 93.7 0.21 4.6E-06 44.8 6.7 97 124-241 169-271 (354)
302 PRK11524 putative methyltransf 93.7 0.095 2.1E-06 46.2 4.5 63 176-241 8-78 (284)
303 PF07279 DUF1442: Protein of u 93.6 1.1 2.3E-05 38.1 10.3 78 123-206 40-123 (218)
304 COG3129 Predicted SAM-dependen 93.4 0.11 2.5E-06 44.5 4.3 83 124-208 78-163 (292)
305 KOG2078 tRNA modification enzy 93.4 0.046 9.9E-07 50.6 2.0 61 125-188 250-312 (495)
306 KOG1098 Putative SAM-dependent 93.3 0.14 3.1E-06 49.5 5.2 102 124-239 44-154 (780)
307 PF02636 Methyltransf_28: Puta 93.3 0.13 2.8E-06 44.5 4.6 54 118-171 11-72 (252)
308 PRK13699 putative methylase; P 93.2 0.12 2.7E-06 44.1 4.3 62 177-241 2-70 (227)
309 cd05188 MDR Medium chain reduc 93.2 1.2 2.6E-05 37.4 10.4 96 123-240 133-229 (271)
310 KOG2360 Proliferation-associat 93.0 0.22 4.7E-06 45.7 5.6 67 120-186 209-275 (413)
311 PRK09424 pntA NAD(P) transhydr 92.9 0.86 1.9E-05 43.7 9.9 42 124-167 164-206 (509)
312 PF00145 DNA_methylase: C-5 cy 92.5 0.4 8.6E-06 42.2 6.7 70 127-208 2-71 (335)
313 cd08281 liver_ADH_like1 Zinc-d 92.5 1.1 2.3E-05 40.6 9.6 96 125-241 192-288 (371)
314 TIGR03451 mycoS_dep_FDH mycoth 92.5 0.94 2E-05 40.7 9.2 97 124-241 176-274 (358)
315 COG1568 Predicted methyltransf 92.0 0.82 1.8E-05 40.4 7.7 87 117-208 145-231 (354)
316 KOG0822 Protein kinase inhibit 91.9 0.45 9.8E-06 45.4 6.5 100 125-240 368-475 (649)
317 COG4301 Uncharacterized conser 91.6 2 4.3E-05 37.5 9.5 105 125-241 79-191 (321)
318 KOG2793 Putative N2,N2-dimethy 91.6 1.1 2.4E-05 38.9 8.1 99 125-240 87-196 (248)
319 TIGR01202 bchC 2-desacetyl-2-h 90.9 1.3 2.8E-05 39.1 8.2 85 124-241 144-229 (308)
320 PF11899 DUF3419: Protein of u 90.7 0.51 1.1E-05 43.5 5.5 61 172-241 272-332 (380)
321 TIGR03366 HpnZ_proposed putati 90.7 2.8 6.1E-05 36.3 10.0 95 124-241 120-216 (280)
322 PLN02740 Alcohol dehydrogenase 90.4 2.5 5.4E-05 38.4 9.8 93 124-240 198-297 (381)
323 cd08230 glucose_DH Glucose deh 90.3 2.8 6E-05 37.6 9.9 92 124-241 172-267 (355)
324 PLN02827 Alcohol dehydrogenase 90.2 2.5 5.5E-05 38.5 9.7 93 124-240 193-292 (378)
325 KOG2651 rRNA adenine N-6-methy 89.7 0.6 1.3E-05 42.9 4.9 41 125-167 154-194 (476)
326 cd05278 FDH_like Formaldehyde 89.6 2.4 5.1E-05 37.5 8.8 96 124-240 167-264 (347)
327 cd08239 THR_DH_like L-threonin 89.0 3.2 6.9E-05 36.7 9.2 95 124-241 163-260 (339)
328 cd08234 threonine_DH_like L-th 88.9 4.8 0.0001 35.3 10.3 95 124-240 159-254 (334)
329 cd08285 NADP_ADH NADP(H)-depen 88.9 3.5 7.7E-05 36.7 9.5 94 124-240 166-263 (351)
330 TIGR03201 dearomat_had 6-hydro 88.8 3.4 7.3E-05 37.0 9.3 42 124-167 166-208 (349)
331 PF05050 Methyltransf_21: Meth 88.8 0.97 2.1E-05 35.4 5.1 42 130-172 1-48 (167)
332 PRK10309 galactitol-1-phosphat 88.7 5.3 0.00011 35.5 10.5 96 124-241 160-258 (347)
333 TIGR02822 adh_fam_2 zinc-bindi 88.7 5.1 0.00011 35.6 10.3 87 124-241 165-252 (329)
334 cd08261 Zn_ADH7 Alcohol dehydr 88.6 3.7 8.1E-05 36.2 9.3 95 124-240 159-255 (337)
335 TIGR02818 adh_III_F_hyde S-(hy 88.5 4.5 9.8E-05 36.6 9.9 95 124-240 185-284 (368)
336 COG1062 AdhC Zn-dependent alco 88.1 5.6 0.00012 36.2 9.9 95 123-241 184-283 (366)
337 cd08232 idonate-5-DH L-idonate 87.8 5.8 0.00012 35.0 10.0 94 124-240 165-259 (339)
338 PTZ00357 methyltransferase; Pr 87.3 3.9 8.4E-05 40.7 8.9 103 126-238 702-830 (1072)
339 PF05206 TRM13: Methyltransfer 87.2 1.3 2.8E-05 38.7 5.3 60 125-186 19-84 (259)
340 KOG3924 Putative protein methy 87.0 1.9 4E-05 39.9 6.3 71 115-186 183-262 (419)
341 PF05430 Methyltransf_30: S-ad 87.0 1.1 2.3E-05 34.7 4.2 56 176-240 32-87 (124)
342 cd08245 CAD Cinnamyl alcohol d 86.7 7.8 0.00017 33.9 10.2 91 124-240 162-253 (330)
343 cd08277 liver_alcohol_DH_like 86.5 6.9 0.00015 35.2 9.9 95 124-240 184-283 (365)
344 cd08255 2-desacetyl-2-hydroxye 86.3 5.8 0.00013 33.8 9.0 90 124-240 97-187 (277)
345 cd08293 PTGR2 Prostaglandin re 86.1 11 0.00024 33.3 10.9 94 126-240 156-251 (345)
346 KOG2912 Predicted DNA methylas 85.9 1.1 2.5E-05 40.2 4.3 56 128-184 106-162 (419)
347 PRK03659 glutathione-regulated 85.9 4.8 0.0001 39.3 9.0 72 127-209 402-475 (601)
348 cd08301 alcohol_DH_plants Plan 85.8 7.6 0.00017 34.9 9.8 93 124-240 187-286 (369)
349 cd08300 alcohol_DH_class_III c 85.5 9.1 0.0002 34.5 10.2 93 124-240 186-285 (368)
350 TIGR00675 dcm DNA-methyltransf 85.4 2 4.4E-05 38.4 5.8 68 128-207 1-68 (315)
351 COG0270 Dcm Site-specific DNA 85.3 3.2 6.9E-05 37.3 7.0 75 125-208 3-77 (328)
352 COG0677 WecC UDP-N-acetyl-D-ma 85.2 3.3 7.2E-05 38.4 7.0 105 126-241 10-126 (436)
353 cd08278 benzyl_alcohol_DH Benz 85.2 11 0.00023 34.0 10.5 96 124-240 186-282 (365)
354 TIGR02819 fdhA_non_GSH formald 84.5 7.4 0.00016 35.8 9.2 104 125-241 186-297 (393)
355 PRK07806 short chain dehydroge 84.3 13 0.00029 31.0 10.1 114 125-241 6-132 (248)
356 TIGR00497 hsdM type I restrict 84.2 6 0.00013 37.7 8.7 112 125-239 218-351 (501)
357 COG3510 CmcI Cephalosporin hyd 84.2 6.8 0.00015 32.9 7.8 101 124-240 69-177 (237)
358 PRK10669 putative cation:proto 84.1 7.3 0.00016 37.6 9.3 66 133-208 423-491 (558)
359 KOG0023 Alcohol dehydrogenase, 84.0 6 0.00013 35.8 7.9 94 124-241 181-277 (360)
360 COG5379 BtaA S-adenosylmethion 84.0 3.6 7.8E-05 36.8 6.4 86 142-241 278-364 (414)
361 PF06859 Bin3: Bicoid-interact 83.9 0.63 1.4E-05 35.3 1.5 19 223-241 24-42 (110)
362 cd08236 sugar_DH NAD(P)-depend 83.4 11 0.00024 33.2 9.6 94 124-240 159-255 (343)
363 cd08286 FDH_like_ADH2 formalde 83.0 13 0.00028 32.8 10.0 95 125-240 167-263 (345)
364 cd08240 6_hydroxyhexanoate_dh_ 82.9 15 0.00032 32.6 10.3 96 124-240 175-271 (350)
365 cd08238 sorbose_phosphate_red 82.6 8.6 0.00019 35.3 8.9 100 124-240 175-285 (410)
366 cd08295 double_bond_reductase_ 82.4 16 0.00035 32.3 10.3 92 124-240 151-248 (338)
367 cd05281 TDH Threonine dehydrog 82.2 13 0.00028 32.9 9.6 94 125-240 164-259 (341)
368 PLN03154 putative allyl alcoho 82.1 17 0.00038 32.5 10.5 92 124-240 158-255 (348)
369 PF03686 UPF0146: Uncharacteri 81.8 7.8 0.00017 30.1 6.9 67 125-209 14-81 (127)
370 cd00401 AdoHcyase S-adenosyl-L 81.8 9.1 0.0002 35.8 8.6 84 124-240 201-286 (413)
371 PRK08703 short chain dehydroge 81.7 11 0.00025 31.3 8.7 59 125-185 6-66 (239)
372 PRK07102 short chain dehydroge 81.6 8.6 0.00019 32.1 7.9 60 126-187 2-63 (243)
373 PLN02702 L-idonate 5-dehydroge 81.5 14 0.0003 33.1 9.7 98 124-240 181-282 (364)
374 KOG0022 Alcohol dehydrogenase, 81.4 12 0.00025 33.9 8.7 43 124-167 192-235 (375)
375 COG4121 Uncharacterized conser 81.4 3.8 8.1E-05 35.7 5.6 110 125-240 59-205 (252)
376 COG0863 DNA modification methy 81.3 4.2 9.1E-05 35.4 6.1 48 122-172 220-267 (302)
377 cd05285 sorbitol_DH Sorbitol d 81.3 15 0.00033 32.4 9.8 94 124-240 162-262 (343)
378 PRK03562 glutathione-regulated 81.1 9 0.0002 37.6 8.8 74 126-209 401-475 (621)
379 TIGR00692 tdh L-threonine 3-de 81.0 15 0.00032 32.5 9.6 95 125-240 162-258 (340)
380 COG1748 LYS9 Saccharopine dehy 80.9 13 0.00027 34.5 9.1 56 126-186 2-58 (389)
381 KOG2920 Predicted methyltransf 80.9 1.3 2.9E-05 39.0 2.6 38 124-163 116-153 (282)
382 cd08233 butanediol_DH_like (2R 80.7 14 0.0003 32.8 9.3 96 124-240 172-269 (351)
383 PF02153 PDH: Prephenate dehyd 80.6 5.6 0.00012 34.4 6.5 75 139-240 2-76 (258)
384 PRK10083 putative oxidoreducta 80.3 19 0.0004 31.7 10.0 95 124-240 160-256 (339)
385 TIGR02825 B4_12hDH leukotriene 80.3 30 0.00064 30.3 11.2 94 124-240 138-234 (325)
386 PRK08213 gluconate 5-dehydroge 79.4 13 0.00028 31.4 8.3 68 115-186 3-72 (259)
387 PRK07326 short chain dehydroge 79.4 9.8 0.00021 31.5 7.5 58 125-186 6-65 (237)
388 TIGR00561 pntA NAD(P) transhyd 78.9 19 0.0004 34.7 9.8 42 124-167 163-205 (511)
389 cd05279 Zn_ADH1 Liver alcohol 78.7 23 0.0005 31.8 10.1 94 125-240 184-282 (365)
390 PF03721 UDPG_MGDP_dh_N: UDP-g 78.3 3.7 8E-05 33.8 4.4 82 150-241 24-118 (185)
391 PRK06124 gluconate 5-dehydroge 78.1 14 0.0003 31.0 8.1 60 124-186 10-71 (256)
392 PRK06701 short chain dehydroge 77.8 36 0.00079 29.5 10.9 59 125-186 46-107 (290)
393 TIGR00027 mthyl_TIGR00027 meth 77.6 33 0.00071 29.8 10.3 104 125-241 82-195 (260)
394 PRK05396 tdh L-threonine 3-deh 77.6 18 0.00039 31.9 9.0 94 125-241 164-261 (341)
395 PRK07454 short chain dehydroge 77.5 15 0.00032 30.5 8.1 59 125-186 6-66 (241)
396 KOG2782 Putative SAM dependent 77.1 2.4 5.2E-05 36.3 2.9 56 115-171 34-89 (303)
397 cd08294 leukotriene_B4_DH_like 76.8 35 0.00075 29.7 10.5 94 124-240 143-238 (329)
398 PRK09422 ethanol-active dehydr 76.7 28 0.00061 30.5 10.0 95 124-240 162-258 (338)
399 PLN02586 probable cinnamyl alc 76.4 25 0.00054 31.7 9.7 91 124-240 183-275 (360)
400 cd08231 MDR_TM0436_like Hypoth 76.3 29 0.00063 30.9 10.1 95 124-241 177-278 (361)
401 cd05284 arabinose_DH_like D-ar 75.8 25 0.00053 30.9 9.4 94 124-240 167-263 (340)
402 PRK09496 trkA potassium transp 75.8 23 0.0005 32.8 9.5 75 125-208 231-307 (453)
403 PRK08945 putative oxoacyl-(acy 75.5 15 0.00032 30.8 7.5 59 125-185 12-72 (247)
404 PRK15057 UDP-glucose 6-dehydro 75.4 22 0.00049 32.8 9.2 33 134-167 7-40 (388)
405 PRK07904 short chain dehydroge 75.3 15 0.00032 31.3 7.5 78 125-206 8-95 (253)
406 PF11312 DUF3115: Protein of u 74.9 5.2 0.00011 35.9 4.7 113 126-241 88-240 (315)
407 KOG1201 Hydroxysteroid 17-beta 74.9 13 0.00028 33.1 7.1 58 124-186 37-97 (300)
408 cd08279 Zn_ADH_class_III Class 74.8 36 0.00078 30.4 10.3 96 124-240 182-279 (363)
409 PRK06949 short chain dehydroge 74.7 19 0.00042 30.1 8.1 60 124-186 8-69 (258)
410 PRK06172 short chain dehydroge 74.6 19 0.00042 30.1 8.0 59 125-186 7-67 (253)
411 KOG0821 Predicted ribosomal RN 74.1 6.9 0.00015 33.7 4.9 64 120-186 46-109 (326)
412 PRK07523 gluconate 5-dehydroge 73.9 20 0.00042 30.2 7.9 59 125-186 10-70 (255)
413 PRK07666 fabG 3-ketoacyl-(acyl 73.6 22 0.00048 29.4 8.1 59 125-186 7-67 (239)
414 COG2933 Predicted SAM-dependen 73.5 18 0.00038 32.1 7.4 33 125-160 212-244 (358)
415 PRK08862 short chain dehydroge 73.5 28 0.0006 29.2 8.7 78 125-206 5-91 (227)
416 PRK06125 short chain dehydroge 73.4 22 0.00047 30.0 8.1 78 125-205 7-88 (259)
417 PRK07576 short chain dehydroge 73.3 22 0.00048 30.2 8.2 59 125-186 9-69 (264)
418 cd08263 Zn_ADH10 Alcohol dehyd 73.2 31 0.00067 30.9 9.4 95 125-240 188-284 (367)
419 COG1255 Uncharacterized protei 73.1 27 0.00058 26.9 7.4 48 125-186 14-62 (129)
420 PRK08339 short chain dehydroge 73.0 24 0.00051 30.1 8.3 60 125-186 8-69 (263)
421 PRK07814 short chain dehydroge 72.5 23 0.0005 30.0 8.1 59 125-186 10-70 (263)
422 KOG1209 1-Acyl dihydroxyaceton 71.8 27 0.00059 30.0 7.9 74 125-205 7-88 (289)
423 cd08296 CAD_like Cinnamyl alco 71.4 44 0.00094 29.4 9.9 93 124-240 163-256 (333)
424 cd08265 Zn_ADH3 Alcohol dehydr 70.6 45 0.00098 30.2 10.0 96 125-240 204-304 (384)
425 PF03514 GRAS: GRAS domain fam 70.6 64 0.0014 29.6 10.9 55 117-171 103-167 (374)
426 COG0604 Qor NADPH:quinone redu 70.1 34 0.00073 30.7 8.9 95 124-241 142-239 (326)
427 PLN02514 cinnamyl-alcohol dehy 70.0 37 0.0008 30.4 9.2 92 124-240 180-272 (357)
428 PRK05867 short chain dehydroge 69.9 26 0.00057 29.4 7.8 60 124-186 8-69 (253)
429 cd08242 MDR_like Medium chain 69.8 42 0.00091 29.1 9.3 87 124-240 155-242 (319)
430 PRK05808 3-hydroxybutyryl-CoA 69.7 28 0.0006 30.2 8.1 91 127-239 5-114 (282)
431 PRK09291 short chain dehydroge 69.5 33 0.00071 28.6 8.3 76 126-205 3-80 (257)
432 PRK09496 trkA potassium transp 69.2 47 0.001 30.7 9.9 71 128-208 3-75 (453)
433 cd08284 FDH_like_2 Glutathione 68.9 47 0.001 29.1 9.5 94 125-240 168-263 (344)
434 PRK06181 short chain dehydroge 68.9 30 0.00065 29.1 8.0 58 126-186 2-61 (263)
435 PRK12384 sorbitol-6-phosphate 68.7 31 0.00068 28.9 8.0 59 126-186 3-64 (259)
436 PRK08643 acetoin reductase; Va 68.5 30 0.00065 29.0 7.9 58 126-186 3-62 (256)
437 PRK08251 short chain dehydroge 68.0 34 0.00074 28.4 8.1 59 126-186 3-64 (248)
438 PRK07677 short chain dehydroge 67.9 32 0.0007 28.8 7.9 58 126-186 2-61 (252)
439 cd08282 PFDH_like Pseudomonas 67.7 57 0.0012 29.3 10.0 42 125-167 177-219 (375)
440 PRK06101 short chain dehydroge 67.7 56 0.0012 27.2 9.3 53 127-186 3-57 (240)
441 PRK05786 fabG 3-ketoacyl-(acyl 67.6 34 0.00075 28.1 8.0 58 125-186 5-64 (238)
442 PRK07502 cyclohexadienyl dehyd 67.5 34 0.00074 30.1 8.3 89 126-240 7-97 (307)
443 TIGR03206 benzo_BadH 2-hydroxy 67.4 35 0.00076 28.3 8.0 59 125-186 3-63 (250)
444 PRK12826 3-ketoacyl-(acyl-carr 67.4 31 0.00068 28.5 7.7 59 125-186 6-66 (251)
445 TIGR02817 adh_fam_1 zinc-bindi 67.2 53 0.0011 28.6 9.5 92 125-240 149-244 (336)
446 COG0287 TyrA Prephenate dehydr 67.2 31 0.00068 30.4 7.8 88 126-239 4-94 (279)
447 PRK07417 arogenate dehydrogena 67.0 26 0.00057 30.5 7.4 83 128-239 3-87 (279)
448 cd08241 QOR1 Quinone oxidoredu 66.7 52 0.0011 28.0 9.1 41 124-166 139-181 (323)
449 COG5379 BtaA S-adenosylmethion 66.7 17 0.00036 32.7 5.8 45 124-171 63-107 (414)
450 PRK07533 enoyl-(acyl carrier p 66.1 43 0.00093 28.4 8.4 78 124-205 9-95 (258)
451 cd08243 quinone_oxidoreductase 65.8 85 0.0018 26.8 10.6 92 124-240 142-235 (320)
452 PRK08507 prephenate dehydrogen 65.6 32 0.00069 29.8 7.6 83 128-239 3-87 (275)
453 PRK06914 short chain dehydroge 65.3 39 0.00085 28.7 8.1 61 125-187 3-66 (280)
454 PRK10458 DNA cytosine methylas 65.2 14 0.00029 35.2 5.4 58 125-186 88-145 (467)
455 PRK09260 3-hydroxybutyryl-CoA 65.1 23 0.0005 30.9 6.7 40 127-169 3-44 (288)
456 PLN02178 cinnamyl-alcohol dehy 65.1 61 0.0013 29.4 9.6 90 124-240 178-270 (375)
457 PRK07774 short chain dehydroge 65.0 43 0.00094 27.8 8.1 60 125-187 6-67 (250)
458 PRK15182 Vi polysaccharide bio 65.0 26 0.00057 32.8 7.3 38 127-166 8-45 (425)
459 cd08287 FDH_like_ADH3 formalde 65.0 59 0.0013 28.5 9.4 95 125-240 169-265 (345)
460 cd08256 Zn_ADH2 Alcohol dehydr 64.7 52 0.0011 29.1 9.0 93 125-240 175-271 (350)
461 cd08291 ETR_like_1 2-enoyl thi 64.7 92 0.002 27.1 10.5 86 132-240 152-239 (324)
462 PRK07062 short chain dehydroge 64.7 40 0.00086 28.4 7.9 61 124-186 7-70 (265)
463 PRK05993 short chain dehydroge 64.7 44 0.00095 28.6 8.3 72 125-205 4-83 (277)
464 PRK09135 pteridine reductase; 64.6 44 0.00095 27.6 8.1 60 125-186 6-68 (249)
465 PRK11064 wecC UDP-N-acetyl-D-m 64.6 41 0.00089 31.3 8.5 103 127-240 5-116 (415)
466 PRK07530 3-hydroxybutyryl-CoA 64.4 88 0.0019 27.2 10.2 93 126-240 5-116 (292)
467 COG4627 Uncharacterized protei 64.3 5.4 0.00012 32.4 2.2 19 223-241 66-84 (185)
468 PRK06194 hypothetical protein; 64.1 40 0.00088 28.8 7.9 59 125-186 6-66 (287)
469 PRK06113 7-alpha-hydroxysteroi 63.8 45 0.00097 28.0 8.0 60 125-187 11-72 (255)
470 TIGR00936 ahcY adenosylhomocys 63.5 40 0.00087 31.4 8.1 38 124-163 194-232 (406)
471 PRK08293 3-hydroxybutyryl-CoA 63.4 75 0.0016 27.6 9.6 42 126-170 4-47 (287)
472 PRK06940 short chain dehydroge 63.2 27 0.00058 30.0 6.6 77 127-206 4-84 (275)
473 PRK08306 dipicolinate synthase 62.9 64 0.0014 28.5 9.0 40 124-165 151-191 (296)
474 PRK05599 hypothetical protein; 62.6 29 0.00062 29.2 6.6 78 127-206 2-85 (246)
475 TIGR00518 alaDH alanine dehydr 62.1 47 0.001 30.4 8.3 40 125-166 167-207 (370)
476 cd08260 Zn_ADH6 Alcohol dehydr 62.0 86 0.0019 27.5 9.8 92 124-240 165-261 (345)
477 KOG2539 Mitochondrial/chloropl 61.9 23 0.0005 33.6 6.1 110 125-241 201-313 (491)
478 PRK15001 SAM-dependent 23S rib 61.8 80 0.0017 29.2 9.7 92 126-240 46-139 (378)
479 PRK07109 short chain dehydroge 61.5 50 0.0011 29.4 8.3 59 125-186 8-68 (334)
480 cd08235 iditol_2_DH_like L-idi 61.4 1E+02 0.0023 26.8 10.3 95 124-240 165-262 (343)
481 PRK08324 short chain dehydroge 61.4 57 0.0012 32.3 9.3 58 125-186 422-481 (681)
482 PRK08340 glucose-1-dehydrogena 60.9 42 0.00091 28.3 7.4 56 127-186 2-59 (259)
483 cd08298 CAD2 Cinnamyl alcohol 60.8 97 0.0021 26.9 9.9 85 125-240 168-253 (329)
484 cd08252 AL_MDR Arginate lyase 60.7 98 0.0021 26.8 9.9 94 125-240 150-245 (336)
485 TIGR01963 PHB_DH 3-hydroxybuty 60.4 51 0.0011 27.3 7.7 57 127-186 3-61 (255)
486 PRK05476 S-adenosyl-L-homocyst 60.2 47 0.001 31.2 8.0 39 124-164 211-250 (425)
487 cd08258 Zn_ADH4 Alcohol dehydr 60.2 70 0.0015 27.8 8.9 94 125-240 165-261 (306)
488 PRK13394 3-hydroxybutyrate deh 60.1 52 0.0011 27.5 7.8 59 125-186 7-67 (262)
489 PF13561 adh_short_C2: Enoyl-( 60.0 43 0.00092 27.9 7.2 71 132-205 1-80 (241)
490 PF00106 adh_short: short chai 60.0 49 0.0011 25.5 7.1 77 127-207 2-89 (167)
491 PRK07063 short chain dehydroge 59.9 56 0.0012 27.4 8.0 60 125-186 7-69 (260)
492 PF04072 LCM: Leucine carboxyl 59.9 15 0.00032 30.0 4.1 60 125-186 79-141 (183)
493 PRK05875 short chain dehydroge 58.5 62 0.0013 27.4 8.1 60 125-186 7-69 (276)
494 PRK07890 short chain dehydroge 58.0 73 0.0016 26.5 8.3 59 125-186 5-65 (258)
495 PRK12829 short chain dehydroge 57.9 55 0.0012 27.3 7.6 58 124-186 10-69 (264)
496 PF07101 DUF1363: Protein of u 57.6 3.6 7.9E-05 30.3 0.1 18 128-145 6-23 (124)
497 PRK12429 3-hydroxybutyrate deh 57.3 43 0.00093 27.8 6.8 58 126-186 5-64 (258)
498 PRK07024 short chain dehydroge 56.7 43 0.00093 28.2 6.7 57 126-186 3-61 (257)
499 PF01210 NAD_Gly3P_dh_N: NAD-d 56.6 52 0.0011 25.9 6.8 92 128-240 2-100 (157)
500 cd08297 CAD3 Cinnamyl alcohol 56.3 1.2E+02 0.0026 26.5 9.7 95 124-240 165-262 (341)
No 1
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.92 E-value=3.3e-24 Score=179.14 Aligned_cols=125 Identities=42% Similarity=0.756 Sum_probs=108.8
Q ss_pred hhhhHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhc
Q 026219 113 IPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLV 192 (241)
Q Consensus 113 ~~~~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~ 192 (241)
..+|.+.++.. .+.+||||||.|.+++.+|+++|+ ..++|||++...+..+.+++.+.+++|+.++++|+...++.++
T Consensus 7 ~~~~~~~f~~~-~~l~lEIG~G~G~~l~~~A~~~Pd-~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~ 84 (195)
T PF02390_consen 7 PLDWQEIFGND-NPLILEIGCGKGEFLIELAKRNPD-INFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLF 84 (195)
T ss_dssp TTCHHHHHTSC-CEEEEEET-TTSHHHHHHHHHSTT-SEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHS
T ss_pred ccCHHHHcCCC-CCeEEEecCCCCHHHHHHHHHCCC-CCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcc
Confidence 44899999874 569999999999999999999999 9999999999999999999999999999999999998777765
Q ss_pred cCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 193 SSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 193 ~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
+ ++++|.|.++|||||++++|++||+++..+++.+.++|+|||.|+|
T Consensus 85 ~--~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~ 131 (195)
T PF02390_consen 85 P--PGSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYF 131 (195)
T ss_dssp T--TTSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEE
T ss_pred c--CCchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEE
Confidence 3 6999999999999999999999999999999999999999999975
No 2
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.91 E-value=4e-24 Score=181.99 Aligned_cols=125 Identities=38% Similarity=0.653 Sum_probs=116.8
Q ss_pred hhhHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhcc
Q 026219 114 PDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVS 193 (241)
Q Consensus 114 ~~~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~ 193 (241)
.+|...|..+..+.+||||||.|.++..+|+++|+ ..++|||+....+..|.+++.+.+++|+++++.|+.+.++.++
T Consensus 38 ~~~~~~f~~~~~pi~lEIGfG~G~~l~~~A~~nP~-~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~- 115 (227)
T COG0220 38 GDWSALFGNNNAPIVLEIGFGMGEFLVEMAKKNPE-KNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLI- 115 (227)
T ss_pred chHHHHhCCCCCcEEEEECCCCCHHHHHHHHHCCC-CCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcC-
Confidence 47888998876689999999999999999999999 8999999999999999999999999999999999998777765
Q ss_pred CCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 194 SYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 194 ~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
+++++|.|.++|||||++++|++||+++..+++.+.++|+|||.|.|
T Consensus 116 -~~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~ 162 (227)
T COG0220 116 -PDGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHF 162 (227)
T ss_pred -CCCCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEE
Confidence 35699999999999999999999999999999999999999999975
No 3
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.89 E-value=8.8e-23 Score=170.26 Aligned_cols=124 Identities=39% Similarity=0.663 Sum_probs=110.6
Q ss_pred hhhHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhcc
Q 026219 114 PDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVS 193 (241)
Q Consensus 114 ~~~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~ 193 (241)
.+|...|.+ ..++|||||||+|.++..+++++|+ .+++|+|+++++++.|++++++.+++|++++++|+.+..+..+
T Consensus 7 ~~~~~~f~~-~~~~ilDiGcG~G~~~~~la~~~p~-~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~- 83 (194)
T TIGR00091 7 PDFATVFGN-KAPLHLEIGCGKGRFLIDMAKQNPD-KNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFF- 83 (194)
T ss_pred CCHHHHhCC-CCceEEEeCCCccHHHHHHHHhCCC-CCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhC-
Confidence 468888875 4689999999999999999999998 8999999999999999999998888899999999986443322
Q ss_pred CCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 194 SYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 194 ~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
+++++|.|++++|+||+++++.++|++++.+++++.++|||||.|++
T Consensus 84 -~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~ 130 (194)
T TIGR00091 84 -PDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHF 130 (194)
T ss_pred -CCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEE
Confidence 34689999999999999998889999999999999999999999975
No 4
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.85 E-value=7.2e-21 Score=172.76 Aligned_cols=121 Identities=24% Similarity=0.468 Sum_probs=107.0
Q ss_pred hhHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccC
Q 026219 115 DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSS 194 (241)
Q Consensus 115 ~~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~ 194 (241)
.+.+.+..+.++.+||||||+|.++..+|+++|+ ..++|+|+++.+++.|.+++...+++|+.++++|+...+.. +
T Consensus 113 ~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~-~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~-~-- 188 (390)
T PRK14121 113 NFLDFISKNQEKILIEIGFGSGRHLLYQAKNNPN-KLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLEL-L-- 188 (390)
T ss_pred HHHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCC-CCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhh-C--
Confidence 3455565666789999999999999999999998 89999999999999999999999999999999999754322 2
Q ss_pred CCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 195 YPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 195 ~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
+++++|.|+++||+||+++++ ||+++..+++++.|+|+|||.+.|
T Consensus 189 ~~~s~D~I~lnFPdPW~KkrH--RRlv~~~fL~e~~RvLkpGG~l~l 233 (390)
T PRK14121 189 PSNSVEKIFVHFPVPWDKKPH--RRVISEDFLNEALRVLKPGGTLEL 233 (390)
T ss_pred CCCceeEEEEeCCCCccccch--hhccHHHHHHHHHHHcCCCcEEEE
Confidence 478999999999999998876 899999999999999999999875
No 5
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.83 E-value=5.9e-20 Score=154.23 Aligned_cols=124 Identities=35% Similarity=0.628 Sum_probs=107.0
Q ss_pred hhhHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhcc
Q 026219 114 PDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVS 193 (241)
Q Consensus 114 ~~~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~ 193 (241)
..|.+.+.+ ++.+|||||||+|.++..+++.+|+ .+|+|+|+|+++++.|+++++..+++|++++++|+.+.++..+
T Consensus 31 ~~~~~~~~~-~~~~VLDiGcGtG~~~~~la~~~p~-~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~- 107 (202)
T PRK00121 31 LDWAELFGN-DAPIHLEIGFGKGEFLVEMAKANPD-INFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMF- 107 (202)
T ss_pred CCHHHHcCC-CCCeEEEEccCCCHHHHHHHHHCCC-ccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHc-
Confidence 479998888 5789999999999999999999887 7999999999999999999988888889999999943333222
Q ss_pred CCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 194 SYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 194 ~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
.++++|.|++++++||.+..++.++...+.+++++.++|||||.|+|
T Consensus 108 -~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i 154 (202)
T PRK00121 108 -PDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHF 154 (202)
T ss_pred -CccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEE
Confidence 36789999999999887766667777788999999999999999975
No 6
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.82 E-value=7.1e-20 Score=156.58 Aligned_cols=104 Identities=18% Similarity=0.323 Sum_probs=92.6
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS 203 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~ 203 (241)
++.+|||||||||..++.+++..+. ++|+|+|+|+.|++.|+++..+.+..+++|+++|+++ ++++|.+||.|.
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~-g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~-----LPf~D~sFD~vt 124 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGT-GEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAEN-----LPFPDNSFDAVT 124 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCC-ceEEEEECCHHHHHHHHHHhhccCccceEEEEechhh-----CCCCCCccCEEE
Confidence 5799999999999999999999986 8999999999999999999998888789999999987 566799999999
Q ss_pred EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
+.|.-.+..+. +.+|+|++|+|||||++.+
T Consensus 125 ~~fglrnv~d~--------~~aL~E~~RVlKpgG~~~v 154 (238)
T COG2226 125 ISFGLRNVTDI--------DKALKEMYRVLKPGGRLLV 154 (238)
T ss_pred eeehhhcCCCH--------HHHHHHHHHhhcCCeEEEE
Confidence 88766554443 5999999999999998764
No 7
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.82 E-value=6.4e-20 Score=173.23 Aligned_cols=121 Identities=25% Similarity=0.365 Sum_probs=107.3
Q ss_pred hHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCC
Q 026219 116 WSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSY 195 (241)
Q Consensus 116 ~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~ 195 (241)
|...+. .+++.+||||||.|.++..+|+++|+ ..++|||++...+..+.+++++.+++|+.++..|+.. +...+ +
T Consensus 340 ~eklf~-~~~p~~lEIG~G~G~~~~~~A~~~p~-~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~-~~~~~--~ 414 (506)
T PRK01544 340 KEKLVN-EKRKVFLEIGFGMGEHFINQAKMNPD-ALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDL-ILNDL--P 414 (506)
T ss_pred HHHhCC-CCCceEEEECCCchHHHHHHHHhCCC-CCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHH-HHHhc--C
Confidence 334454 35799999999999999999999999 8999999999999999999988899999999888753 33333 4
Q ss_pred CCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 196 PGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 196 ~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
++++|.|+++|||||+|++|++||+++..+++.+.++|||||.|+|
T Consensus 415 ~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~ 460 (506)
T PRK01544 415 NNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVF 460 (506)
T ss_pred cccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEE
Confidence 6889999999999999999999999999999999999999999875
No 8
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.82 E-value=8.4e-20 Score=156.54 Aligned_cols=107 Identities=21% Similarity=0.287 Sum_probs=79.3
Q ss_pred CCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeE
Q 026219 122 NPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLML 201 (241)
Q Consensus 122 ~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~ 201 (241)
..++.+|||+|||||..+..++++.+..++|+|+|+|++|++.|+++.++.+..|++++++|+++ ++.++++||.
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~-----lp~~d~sfD~ 119 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAED-----LPFPDNSFDA 119 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB-------S-TT-EEE
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHH-----hcCCCCceeE
Confidence 34578999999999999999998864337999999999999999999998888899999999987 4556899999
Q ss_pred EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
|++.|.-.+..+. ...++|++|+|||||++.|
T Consensus 120 v~~~fglrn~~d~--------~~~l~E~~RVLkPGG~l~i 151 (233)
T PF01209_consen 120 VTCSFGLRNFPDR--------ERALREMYRVLKPGGRLVI 151 (233)
T ss_dssp EEEES-GGG-SSH--------HHHHHHHHHHEEEEEEEEE
T ss_pred EEHHhhHHhhCCH--------HHHHHHHHHHcCCCeEEEE
Confidence 9988865444333 4899999999999999875
No 9
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=99.76 E-value=9.6e-19 Score=143.94 Aligned_cols=149 Identities=35% Similarity=0.528 Sum_probs=128.1
Q ss_pred cccCccceecccccCCC-CCCCCCC--hhhhHHHhcC-----CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHH
Q 026219 89 GELGHARIRQHVNPLSS-SFTVPAP--IPDWSEVYKN-----PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQK 160 (241)
Q Consensus 89 ~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~-----~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~ 160 (241)
+++.+||+|+|.||++| +..+|.. ..+|...++. .....+.|||||.|.+++.|+..||+ ..++|.||.-.
T Consensus 17 pqKr~YRQRAHsNP~sDh~l~yPvsP~~mDWS~~yp~f~~~~~~kvefaDIGCGyGGLlv~Lsp~fPd-tLiLGmEIR~K 95 (249)
T KOG3115|consen 17 PQKRYYRQRAHSNPLSDHTLEYPVSPQEMDWSKYYPDFRRALNKKVEFADIGCGYGGLLMKLAPKFPD-TLILGMEIRDK 95 (249)
T ss_pred cHHHHHHHHhhcCCCccCcccCCCChHhCcHHHhhhhhhhhccccceEEeeccCccchhhhccccCcc-ceeeeehhhHH
Confidence 35677999999999999 3445543 3588776543 22367999999999999999999999 89999999999
Q ss_pred HHHHHHHHHHHhC-------CCCEEEEEccccchHHhhccCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhcc
Q 026219 161 LVKRAEFWVQELA-------LSNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYL 233 (241)
Q Consensus 161 ~v~~a~~~~~~~~-------l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~L 233 (241)
+.++.+++++... ++|+.+.+.++...+++++. .++++..++.||+|+++.+.+++|++...++.+..-+|
T Consensus 96 VsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~--kgqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l 173 (249)
T KOG3115|consen 96 VSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFE--KGQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVL 173 (249)
T ss_pred HHHHHHHHHHHHhccccccccccceeeeccchhhccchhh--hcccccceeecCChhHhhhhccceeechhHHHHHHhhh
Confidence 9999999988764 67899999999987777664 57888899999999999999999999999999999999
Q ss_pred ccCCEEE
Q 026219 234 MPGGKVY 240 (241)
Q Consensus 234 kpGG~l~ 240 (241)
++||.++
T Consensus 174 ~~gg~~y 180 (249)
T KOG3115|consen 174 REGGILY 180 (249)
T ss_pred hcCceEE
Confidence 9999987
No 10
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.76 E-value=7.2e-18 Score=127.37 Aligned_cols=105 Identities=25% Similarity=0.351 Sum_probs=83.1
Q ss_pred CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYPGPLMLVS 203 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~~~~d~V~ 203 (241)
+.+|||||||+|.++..+++++++ .+|+|+|+|+++++.|++++.+.+. ++++++++|+ .. .......||.|+
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~----~~~~~~~~D~v~ 75 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPG-ARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EF----DPDFLEPFDLVI 75 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HG----GTTTSSCEEEEE
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCC-CEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-cc----CcccCCCCCEEE
Confidence 678999999999999999998888 8999999999999999999966555 6899999999 21 111346699988
Q ss_pred EeC-CCC-chhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 204 ILC-PDP-HFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 204 ~~~-~~~-~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
+.. ... .+.. ...+.+++++.+.|+|||+++|
T Consensus 76 ~~~~~~~~~~~~------~~~~~~l~~~~~~L~pgG~lvi 109 (112)
T PF12847_consen 76 CSGFTLHFLLPL------DERRRVLERIRRLLKPGGRLVI 109 (112)
T ss_dssp ECSGSGGGCCHH------HHHHHHHHHHHHHEEEEEEEEE
T ss_pred ECCCccccccch------hHHHHHHHHHHHhcCCCcEEEE
Confidence 776 221 1110 1124889999999999999986
No 11
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.73 E-value=4.5e-17 Score=130.31 Aligned_cols=105 Identities=28% Similarity=0.481 Sum_probs=86.5
Q ss_pred CCCcEEEEcCCccHHHHHHHH-HCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219 124 TLPLMVDIGSGSGRFLIWLAR-RNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV 202 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~-~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V 202 (241)
++.+|||+|||+|.++..+++ .++. .+++|+|+|++|++.|++++++.+.+|++|+++|+.+ ++.. ++..||.|
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~-~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~~~---~~~~~D~I 77 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPG-AKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIED-LPQE---LEEKFDII 77 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTT-SEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTC-GCGC---SSTTEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCC-CEEEEEECcHHHHHHhhcccccccccccceEEeehhc-cccc---cCCCeeEE
Confidence 468999999999999999994 5666 8999999999999999999999999899999999987 3221 12789999
Q ss_pred EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
+...+..+..+. ..+++++.++|++||.+++
T Consensus 78 ~~~~~l~~~~~~--------~~~l~~~~~~lk~~G~~i~ 108 (152)
T PF13847_consen 78 ISNGVLHHFPDP--------EKVLKNIIRLLKPGGILII 108 (152)
T ss_dssp EEESTGGGTSHH--------HHHHHHHHHHEEEEEEEEE
T ss_pred EEcCchhhccCH--------HHHHHHHHHHcCCCcEEEE
Confidence 887554444333 3899999999999999875
No 12
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.72 E-value=9.3e-17 Score=139.94 Aligned_cols=105 Identities=16% Similarity=0.215 Sum_probs=84.2
Q ss_pred CCCCcEEEEcCCccHHHHHHHHHC-CCCcEEEEEeCCHHHHHHHHHHHHH---hCCCCEEEEEccccchHHhhccCCCCc
Q 026219 123 PTLPLMVDIGSGSGRFLIWLARRN-PDSGNYLGLEIRQKLVKRAEFWVQE---LALSNIHFLFANASVSFKQLVSSYPGP 198 (241)
Q Consensus 123 ~~~~~VLDIGCGtG~~~~~la~~~-p~~~~v~giDis~~~v~~a~~~~~~---~~l~ni~~~~~D~~~~~~~~~~~~~~~ 198 (241)
+++.+|||||||+|.++..++++. +. ++|+|+|+|++|++.|+++... ....+++++++|+.+ ++.++++
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~-~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~-----lp~~~~s 145 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSD-GKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATD-----LPFDDCY 145 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEccccc-----CCCCCCC
Confidence 346899999999999999999875 45 6899999999999999887542 234589999999976 3445789
Q ss_pred EeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 199 LMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 199 ~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
||.|++.+...+..+. ..++++++|+|||||++++
T Consensus 146 fD~V~~~~~l~~~~d~--------~~~l~ei~rvLkpGG~l~i 180 (261)
T PLN02233 146 FDAITMGYGLRNVVDR--------LKAMQEMYRVLKPGSRVSI 180 (261)
T ss_pred EeEEEEecccccCCCH--------HHHHHHHHHHcCcCcEEEE
Confidence 9999876654443333 4899999999999999864
No 13
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.71 E-value=2.9e-17 Score=119.44 Aligned_cols=95 Identities=23% Similarity=0.396 Sum_probs=75.8
Q ss_pred EEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEEeCCC
Q 026219 129 VDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSILCPD 208 (241)
Q Consensus 129 LDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~~~~ 208 (241)
||+|||+|..+..++++ +. .+++|+|+++++++.++++... .++.++.+|+.+ ++.++++||.|+....-
T Consensus 1 LdiG~G~G~~~~~l~~~-~~-~~v~~~D~~~~~~~~~~~~~~~---~~~~~~~~d~~~-----l~~~~~sfD~v~~~~~~ 70 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GG-ASVTGIDISEEMLEQARKRLKN---EGVSFRQGDAED-----LPFPDNSFDVVFSNSVL 70 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TT-CEEEEEES-HHHHHHHHHHTTT---STEEEEESBTTS-----SSS-TT-EEEEEEESHG
T ss_pred CEecCcCCHHHHHHHhc-cC-CEEEEEeCCHHHHHHHHhcccc---cCchheeehHHh-----Cccccccccccccccce
Confidence 89999999999999998 55 7899999999999999987643 356799999987 45568999999877654
Q ss_pred CchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 209 PHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 209 ~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
.|.++. +.+++++.|+|||||+++|
T Consensus 71 ~~~~~~--------~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 71 HHLEDP--------EAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp GGSSHH--------HHHHHHHHHHEEEEEEEEE
T ss_pred eeccCH--------HHHHHHHHHHcCcCeEEeC
Confidence 444333 4999999999999999986
No 14
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.70 E-value=3e-16 Score=133.59 Aligned_cols=105 Identities=20% Similarity=0.301 Sum_probs=86.3
Q ss_pred CCCCcEEEEcCCccHHHHHHHHHC-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeE
Q 026219 123 PTLPLMVDIGSGSGRFLIWLARRN-PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLML 201 (241)
Q Consensus 123 ~~~~~VLDIGCGtG~~~~~la~~~-p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~ 201 (241)
.++.+|||+|||+|.++..+++.. +. ++|+|+|+|+++++.++++++..+.++++++.+|+.+ .+.+++++|.
T Consensus 44 ~~~~~vLDiGcG~G~~~~~la~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-----~~~~~~~fD~ 117 (231)
T TIGR02752 44 QAGTSALDVCCGTADWSIALAEAVGPE-GHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAME-----LPFDDNSFDY 117 (231)
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhc-----CCCCCCCccE
Confidence 346899999999999999999886 45 7999999999999999999988777889999999975 2334678999
Q ss_pred EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
|++.+...+..+. .++++++.++|+|||++++
T Consensus 118 V~~~~~l~~~~~~--------~~~l~~~~~~Lk~gG~l~~ 149 (231)
T TIGR02752 118 VTIGFGLRNVPDY--------MQVLREMYRVVKPGGKVVC 149 (231)
T ss_pred EEEecccccCCCH--------HHHHHHHHHHcCcCeEEEE
Confidence 8876544333222 4899999999999999864
No 15
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.69 E-value=2.3e-16 Score=130.99 Aligned_cols=98 Identities=22% Similarity=0.216 Sum_probs=84.6
Q ss_pred CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEE
Q 026219 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSI 204 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~ 204 (241)
+.+|||||||+|..++.+++..++ ++|+|+|+|++|++.|++++++.++++++++.+|+.+ ... +++||.|+.
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~-~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~-----~~~-~~~fDlV~~ 118 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPE-LKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEE-----FGQ-EEKFDVVTS 118 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCC-CeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhh-----CCC-CCCccEEEE
Confidence 689999999999999999998887 8999999999999999999999998889999999976 222 568999887
Q ss_pred eCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 205 LCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 205 ~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
+..... +.+++.++++|||||.+++
T Consensus 119 ~~~~~~------------~~~l~~~~~~LkpGG~lv~ 143 (187)
T PRK00107 119 RAVASL------------SDLVELCLPLLKPGGRFLA 143 (187)
T ss_pred ccccCH------------HHHHHHHHHhcCCCeEEEE
Confidence 542211 4899999999999999875
No 16
>PLN02244 tocopherol O-methyltransferase
Probab=99.69 E-value=2.5e-16 Score=142.08 Aligned_cols=103 Identities=24% Similarity=0.355 Sum_probs=86.0
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCCCcEeEE
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYPGPLMLV 202 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~~~~d~V 202 (241)
++.+|||||||+|.++..+++++ + .+|+|||+|+.|++.++++++..++ ++++++++|+.+ .+..+++||.|
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~-g-~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~-----~~~~~~~FD~V 190 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKY-G-ANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALN-----QPFEDGQFDLV 190 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhc-C-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCccc-----CCCCCCCccEE
Confidence 46789999999999999999987 4 6899999999999999999988877 479999999976 34457899999
Q ss_pred EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
+......|..+. ..++++++++|||||.|+|
T Consensus 191 ~s~~~~~h~~d~--------~~~l~e~~rvLkpGG~lvi 221 (340)
T PLN02244 191 WSMESGEHMPDK--------RKFVQELARVAAPGGRIII 221 (340)
T ss_pred EECCchhccCCH--------HHHHHHHHHHcCCCcEEEE
Confidence 875544333332 4899999999999999875
No 17
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.68 E-value=7.9e-16 Score=117.69 Aligned_cols=102 Identities=24% Similarity=0.293 Sum_probs=84.3
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS 203 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~ 203 (241)
.+.+|||+|||+|.++..+++++++ .+|+|+|+|+.+++.++++++..+..+++++.+|+....+. .+..+|.|+
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~D~v~ 93 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLVPN-GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALED----SLPEPDRVF 93 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCC-ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChh----hcCCCCEEE
Confidence 4579999999999999999999888 89999999999999999999888888899999998642211 235789887
Q ss_pred EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
+...... ..++++++.++|||||.+++
T Consensus 94 ~~~~~~~-----------~~~~l~~~~~~Lk~gG~li~ 120 (124)
T TIGR02469 94 IGGSGGL-----------LQEILEAIWRRLRPGGRIVL 120 (124)
T ss_pred ECCcchh-----------HHHHHHHHHHHcCCCCEEEE
Confidence 7543221 14899999999999999975
No 18
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.66 E-value=7.3e-16 Score=125.96 Aligned_cols=108 Identities=20% Similarity=0.315 Sum_probs=87.8
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS 203 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~ 203 (241)
...+|||+|||+|.+++.++++.+. .+|+++|+++.+++.++++++.+++.+++++.+|..+. . .+..||.|+
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~-~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~----~--~~~~fD~Iv 103 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPD-AKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEA----L--PDGKFDLIV 103 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTC-EEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTT----C--CTTCEEEEE
T ss_pred cCCeEEEecCChHHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccc----c--cccceeEEE
Confidence 4688999999999999999999988 89999999999999999999999987799999998752 2 258899999
Q ss_pred EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
.+.|-... ......+.+.+++...+.|||||.+++
T Consensus 104 ~NPP~~~~---~~~~~~~~~~~i~~a~~~Lk~~G~l~l 138 (170)
T PF05175_consen 104 SNPPFHAG---GDDGLDLLRDFIEQARRYLKPGGRLFL 138 (170)
T ss_dssp E---SBTT---SHCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred Eccchhcc---cccchhhHHHHHHHHHHhccCCCEEEE
Confidence 98764221 111223557999999999999999864
No 19
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.66 E-value=8.6e-16 Score=126.97 Aligned_cols=99 Identities=23% Similarity=0.185 Sum_probs=83.4
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS 203 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~ 203 (241)
++.+|||||||+|..+..++...+. .+|+|+|+|++|++.+++++++.+++|++++++|+.+. . .++.+|.|+
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~-~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~-----~-~~~~fD~I~ 114 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPE-LKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDF-----Q-HEEQFDVIT 114 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCC-CeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhc-----c-ccCCccEEE
Confidence 3689999999999999999988877 79999999999999999999988888899999999762 1 257899887
Q ss_pred EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
... -.+. ..+++.+.++|+|||.+++
T Consensus 115 s~~-~~~~-----------~~~~~~~~~~LkpgG~lvi 140 (181)
T TIGR00138 115 SRA-LASL-----------NVLLELTLNLLKVGGYFLA 140 (181)
T ss_pred ehh-hhCH-----------HHHHHHHHHhcCCCCEEEE
Confidence 654 1111 4788999999999999875
No 20
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.66 E-value=4.5e-16 Score=131.88 Aligned_cols=129 Identities=21% Similarity=0.322 Sum_probs=96.5
Q ss_pred ccccccCccceecccccCCCCCCCCCChhhhHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHH
Q 026219 86 KITGELGHARIRQHVNPLSSSFTVPAPIPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRA 165 (241)
Q Consensus 86 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a 165 (241)
..|...+++++...+||..-.|.... ....+. -.+.+|||||||-|.++..+|+.. .+|+|+|+++++++.|
T Consensus 26 ~wwd~~g~f~~LH~~N~~rl~~i~~~----~~~~~~-l~g~~vLDvGCGgG~Lse~mAr~G---a~VtgiD~se~~I~~A 97 (243)
T COG2227 26 RWWDPEGEFKPLHKINPLRLDYIREV----ARLRFD-LPGLRVLDVGCGGGILSEPLARLG---ASVTGIDASEKPIEVA 97 (243)
T ss_pred hhcCCCCceeeeeeeccchhhhhhhh----hhcccC-CCCCeEEEecCCccHhhHHHHHCC---CeeEEecCChHHHHHH
Confidence 44456777888888888664332211 111111 247899999999999999999984 5799999999999999
Q ss_pred HHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEE-----eCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 166 EFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSI-----LCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 166 ~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~-----~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
+.++.+.++ ++++....+++. ....++||.|++ |.++| +.+++.+.+++||||.++
T Consensus 98 k~ha~e~gv-~i~y~~~~~edl-----~~~~~~FDvV~cmEVlEHv~dp-------------~~~~~~c~~lvkP~G~lf 158 (243)
T COG2227 98 KLHALESGV-NIDYRQATVEDL-----ASAGGQFDVVTCMEVLEHVPDP-------------ESFLRACAKLVKPGGILF 158 (243)
T ss_pred HHhhhhccc-cccchhhhHHHH-----HhcCCCccEEEEhhHHHccCCH-------------HHHHHHHHHHcCCCcEEE
Confidence 999988877 477777777652 212378998854 45555 589999999999999988
Q ss_pred c
Q 026219 241 F 241 (241)
Q Consensus 241 ~ 241 (241)
+
T Consensus 159 ~ 159 (243)
T COG2227 159 L 159 (243)
T ss_pred E
Confidence 5
No 21
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.65 E-value=2.6e-15 Score=125.57 Aligned_cols=111 Identities=16% Similarity=0.174 Sum_probs=84.6
Q ss_pred hhHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccC
Q 026219 115 DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSS 194 (241)
Q Consensus 115 ~~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~ 194 (241)
.+.+.+...++.+|||+|||+|..+..++++ + .+|+|+|+|++|++.++++++..++.++++...|+.+ .+
T Consensus 21 ~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~--g-~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~-----~~- 91 (197)
T PRK11207 21 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN--G-FDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNN-----LT- 91 (197)
T ss_pred HHHHhcccCCCCcEEEECCCCCHHHHHHHHC--C-CEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhh-----CC-
Confidence 4444444434689999999999999999987 4 5799999999999999999988888889999999865 22
Q ss_pred CCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 195 YPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 195 ~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
+++.||.|+......+... .....+++++.++|||||.++
T Consensus 92 ~~~~fD~I~~~~~~~~~~~------~~~~~~l~~i~~~LkpgG~~~ 131 (197)
T PRK11207 92 FDGEYDFILSTVVLMFLEA------KTIPGLIANMQRCTKPGGYNL 131 (197)
T ss_pred cCCCcCEEEEecchhhCCH------HHHHHHHHHHHHHcCCCcEEE
Confidence 2467998876543221110 011599999999999999854
No 22
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.65 E-value=1.2e-15 Score=132.31 Aligned_cols=104 Identities=18% Similarity=0.151 Sum_probs=83.1
Q ss_pred hHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCC
Q 026219 116 WSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSY 195 (241)
Q Consensus 116 ~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~ 195 (241)
+.+.+...++.+|||||||+|.++..+++++|+ .+|+|+|+|+.|++.|++ .+++++++|+.+. . +
T Consensus 21 ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~-~~v~gvD~s~~~~~~a~~-------~~~~~~~~d~~~~----~--~ 86 (255)
T PRK14103 21 LLARVGAERARRVVDLGCGPGNLTRYLARRWPG-AVIEALDSSPEMVAAARE-------RGVDARTGDVRDW----K--P 86 (255)
T ss_pred HHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHh-------cCCcEEEcChhhC----C--C
Confidence 444444445689999999999999999999887 899999999999999865 2578999998652 1 3
Q ss_pred CCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 196 PGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 196 ~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
+++||.|+.++.-.|..+. ..++++++++|||||.++|
T Consensus 87 ~~~fD~v~~~~~l~~~~d~--------~~~l~~~~~~LkpgG~l~~ 124 (255)
T PRK14103 87 KPDTDVVVSNAALQWVPEH--------ADLLVRWVDELAPGSWIAV 124 (255)
T ss_pred CCCceEEEEehhhhhCCCH--------HHHHHHHHHhCCCCcEEEE
Confidence 5789999887655444332 4899999999999999875
No 23
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.63 E-value=4.5e-15 Score=129.63 Aligned_cols=105 Identities=18% Similarity=0.313 Sum_probs=84.0
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS 203 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~ 203 (241)
++.+|||||||+|..++.+++......+|+|+|+|++|++.|+++.+..+..+++++.+|+.+ .+..++.||.|+
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~-----l~~~~~~fD~Vi 151 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEA-----LPVADNSVDVII 151 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhh-----CCCCCCceeEEE
Confidence 478999999999999888887653326899999999999999999988888899999999865 333467899887
Q ss_pred EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
.+....+..+. ..++++++++|||||+|++
T Consensus 152 ~~~v~~~~~d~--------~~~l~~~~r~LkpGG~l~i 181 (272)
T PRK11873 152 SNCVINLSPDK--------ERVFKEAFRVLKPGGRFAI 181 (272)
T ss_pred EcCcccCCCCH--------HHHHHHHHHHcCCCcEEEE
Confidence 65432222222 4899999999999999875
No 24
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.62 E-value=5.4e-15 Score=125.88 Aligned_cols=113 Identities=12% Similarity=0.218 Sum_probs=89.8
Q ss_pred hHHHh----cCCCCCcEEEEcCCccHHHHHHHHHCCCC-----cEEEEEeCCHHHHHHHHHHHHHhCCC---CEEEEEcc
Q 026219 116 WSEVY----KNPTLPLMVDIGSGSGRFLIWLARRNPDS-----GNYLGLEIRQKLVKRAEFWVQELALS---NIHFLFAN 183 (241)
Q Consensus 116 ~~~~~----~~~~~~~VLDIGCGtG~~~~~la~~~p~~-----~~v~giDis~~~v~~a~~~~~~~~l~---ni~~~~~D 183 (241)
|.+.+ ...++.++||++||||-+++.+.+..+.. .+|+.+||||+|+..++++.++.++. .+.|+.+|
T Consensus 88 WKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~d 167 (296)
T KOG1540|consen 88 WKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGD 167 (296)
T ss_pred HHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCC
Confidence 65544 33467899999999999999999875432 58999999999999999999887763 38999999
Q ss_pred ccchHHhhccCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 184 ASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 184 ~~~~~~~~~~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
+++ +++++.++|..++.|.-.+-... +..|++++|+|||||+|++
T Consensus 168 AE~-----LpFdd~s~D~yTiafGIRN~th~--------~k~l~EAYRVLKpGGrf~c 212 (296)
T KOG1540|consen 168 AED-----LPFDDDSFDAYTIAFGIRNVTHI--------QKALREAYRVLKPGGRFSC 212 (296)
T ss_pred ccc-----CCCCCCcceeEEEecceecCCCH--------HHHHHHHHHhcCCCcEEEE
Confidence 987 56678999998877643211111 5999999999999999863
No 25
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.62 E-value=1.9e-15 Score=131.07 Aligned_cols=103 Identities=18% Similarity=0.283 Sum_probs=83.4
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCCCcEeEE
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYPGPLMLV 202 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~~~~d~V 202 (241)
.+.+|||||||+|.++..+++. + .+|+|+|+|++|++.|+++++..++ .+++++++|+.+.. +..+++||+|
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~--g-~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~----~~~~~~fD~V 116 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAEL--G-HQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIA----QHLETPVDLI 116 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHc--C-CEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHh----hhcCCCCCEE
Confidence 4579999999999999999997 3 5799999999999999999988876 57999999997631 1235789998
Q ss_pred EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
+++....|..++ ..+++++.++|||||.+++
T Consensus 117 ~~~~vl~~~~~~--------~~~l~~~~~~LkpgG~l~i 147 (255)
T PRK11036 117 LFHAVLEWVADP--------KSVLQTLWSVLRPGGALSL 147 (255)
T ss_pred EehhHHHhhCCH--------HHHHHHHHHHcCCCeEEEE
Confidence 876543333222 4899999999999999864
No 26
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.62 E-value=6.7e-15 Score=124.53 Aligned_cols=103 Identities=21% Similarity=0.318 Sum_probs=83.5
Q ss_pred hcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcE
Q 026219 120 YKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPL 199 (241)
Q Consensus 120 ~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~ 199 (241)
+...++.+|||||||+|.++..+++..+..++|+|+|+++++++.|++++++.+++|++++.+|+.+.. . ....|
T Consensus 73 l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~----~-~~~~f 147 (215)
T TIGR00080 73 LELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGW----E-PLAPY 147 (215)
T ss_pred hCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCC----c-ccCCC
Confidence 333457899999999999999999986533689999999999999999999999889999999997621 1 23579
Q ss_pred eEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 200 MLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 200 d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
|.|++..+.+ .+.+.+.+.|+|||++++
T Consensus 148 D~Ii~~~~~~--------------~~~~~~~~~L~~gG~lv~ 175 (215)
T TIGR00080 148 DRIYVTAAGP--------------KIPEALIDQLKEGGILVM 175 (215)
T ss_pred CEEEEcCCcc--------------cccHHHHHhcCcCcEEEE
Confidence 9988775433 445668899999999875
No 27
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.62 E-value=4.5e-15 Score=128.51 Aligned_cols=106 Identities=19% Similarity=0.248 Sum_probs=84.7
Q ss_pred hHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCC
Q 026219 116 WSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSY 195 (241)
Q Consensus 116 ~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~ 195 (241)
+.......++.+|||||||+|.++..+++.+++ .+|+|+|+|+.|++.|+++. +++.++.+|+.+. . +
T Consensus 23 ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~-~~v~gvD~s~~~i~~a~~~~-----~~~~~~~~d~~~~----~--~ 90 (258)
T PRK01683 23 LLARVPLENPRYVVDLGCGPGNSTELLVERWPA-ARITGIDSSPAMLAEARSRL-----PDCQFVEADIASW----Q--P 90 (258)
T ss_pred HHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHhC-----CCCeEEECchhcc----C--C
Confidence 344343345689999999999999999999887 89999999999999998753 5789999998752 1 3
Q ss_pred CCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 196 PGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 196 ~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
+.++|.|+.+....|.++. ..+++++.++|||||.+++
T Consensus 91 ~~~fD~v~~~~~l~~~~d~--------~~~l~~~~~~LkpgG~~~~ 128 (258)
T PRK01683 91 PQALDLIFANASLQWLPDH--------LELFPRLVSLLAPGGVLAV 128 (258)
T ss_pred CCCccEEEEccChhhCCCH--------HHHHHHHHHhcCCCcEEEE
Confidence 4689999877665555433 4899999999999999875
No 28
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.61 E-value=5.1e-15 Score=112.66 Aligned_cols=112 Identities=21% Similarity=0.263 Sum_probs=85.3
Q ss_pred CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYPGPLMLVS 203 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~~~~d~V~ 203 (241)
+.+|||+|||+|.++..+++.. . .+++|+|+++..++.++.++...++ .+++++++|+.+..+. ..+.++|.|+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~-~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~---~~~~~~D~Iv 75 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-A-ARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEP---LPDGKFDLIV 75 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-T-CEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHT---CTTT-EEEEE
T ss_pred CCEEEEcCcchHHHHHHHHHHC-C-CeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhh---ccCceeEEEE
Confidence 3589999999999999999998 5 6899999999999999999999887 5799999999764312 2468899999
Q ss_pred EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
.+.|-..........+..+..+++.+.++|||||.+++
T Consensus 76 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~ 113 (117)
T PF13659_consen 76 TNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVF 113 (117)
T ss_dssp E--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred ECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEE
Confidence 88764211111112223567999999999999999875
No 29
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.61 E-value=1.3e-14 Score=120.01 Aligned_cols=100 Identities=20% Similarity=0.297 Sum_probs=83.1
Q ss_pred CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219 123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV 202 (241)
Q Consensus 123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V 202 (241)
.++.+|||||||+|.++..+++++++ .+|+|+|+|+.+++.++++++..++.+++++.+|+... .+..+|.|
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~-------~~~~~D~v 101 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFPS-LQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIE-------LPGKADAI 101 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhh-------cCcCCCEE
Confidence 35689999999999999999999887 89999999999999999999888877899999987431 13578988
Q ss_pred EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
++....... ..+++.+.++|+|||.+++
T Consensus 102 ~~~~~~~~~-----------~~~l~~~~~~Lk~gG~lv~ 129 (187)
T PRK08287 102 FIGGSGGNL-----------TAIIDWSLAHLHPGGRLVL 129 (187)
T ss_pred EECCCccCH-----------HHHHHHHHHhcCCCeEEEE
Confidence 876432211 4789999999999999874
No 30
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.61 E-value=1.4e-14 Score=120.80 Aligned_cols=102 Identities=22% Similarity=0.342 Sum_probs=81.9
Q ss_pred CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219 123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV 202 (241)
Q Consensus 123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V 202 (241)
.++.+|||+|||+|.++..+++..++ .+|+|+|+|+++++.+++++++.+..+++++.+|+.+.++.. ...+|.+
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~~~-~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~----~~~~d~v 113 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLCPK-GRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQL----APAPDRV 113 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhC----CCCCCEE
Confidence 34689999999999999999988877 899999999999999999999888888999999997533322 1234555
Q ss_pred EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
++....+. ..+++++.++|+|||++++
T Consensus 114 ~~~~~~~~------------~~~l~~~~~~LkpgG~li~ 140 (196)
T PRK07402 114 CIEGGRPI------------KEILQAVWQYLKPGGRLVA 140 (196)
T ss_pred EEECCcCH------------HHHHHHHHHhcCCCeEEEE
Confidence 55432221 4899999999999999875
No 31
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.60 E-value=3.4e-15 Score=133.61 Aligned_cols=102 Identities=23% Similarity=0.235 Sum_probs=80.3
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCCCcEeEE
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYPGPLMLV 202 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~~~~d~V 202 (241)
++.+|||||||+|.++..+++. + .+|+|||+|+++++.|+++.+..+. .+++++++|+.+ ++..+++||.|
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~--g-~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~-----l~~~~~~FD~V 202 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM--G-ATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEK-----LADEGRKFDAV 202 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc--C-CEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHH-----hhhccCCCCEE
Confidence 3568999999999999999875 4 6899999999999999988765544 479999999875 22235789988
Q ss_pred EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
+....-.|..+. ..+++++.++|||||.++|
T Consensus 203 i~~~vLeHv~d~--------~~~L~~l~r~LkPGG~lii 233 (322)
T PLN02396 203 LSLEVIEHVANP--------AEFCKSLSALTIPNGATVL 233 (322)
T ss_pred EEhhHHHhcCCH--------HHHHHHHHHHcCCCcEEEE
Confidence 764432222222 4999999999999999985
No 32
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.60 E-value=3e-15 Score=111.63 Aligned_cols=97 Identities=28% Similarity=0.381 Sum_probs=73.5
Q ss_pred EEEEcCCccHHHHHHHHHC---CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEE
Q 026219 128 MVDIGSGSGRFLIWLARRN---PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSI 204 (241)
Q Consensus 128 VLDIGCGtG~~~~~la~~~---p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~ 204 (241)
|||+|||+|..+..+++.+ +. .+++|+|+|++|++.++++.+..+. +++++++|+.+. +. .++++|+|+.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~-~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~~~l-~~----~~~~~D~v~~ 73 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPS-SRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADARDL-PF----SDGKFDLVVC 73 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS------SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCTTCH-HH----HSSSEEEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhccc-ceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCHhHC-cc----cCCCeeEEEE
Confidence 7999999999999999987 33 6899999999999999999887665 899999999872 22 3578999887
Q ss_pred eCC-CCchhhhhhhcccchHHHHHHHHhccccCC
Q 026219 205 LCP-DPHFKKKHHKRRVVQKPLVDSIIDYLMPGG 237 (241)
Q Consensus 205 ~~~-~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG 237 (241)
... -.+..+ .....+++++.++|||||
T Consensus 74 ~~~~~~~~~~------~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 74 SGLSLHHLSP------EELEALLRRIARLLRPGG 101 (101)
T ss_dssp -TTGGGGSSH------HHHHHHHHHHHHTEEEEE
T ss_pred cCCccCCCCH------HHHHHHHHHHHHHhCCCC
Confidence 432 222211 122599999999999998
No 33
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.59 E-value=6.2e-15 Score=127.37 Aligned_cols=102 Identities=13% Similarity=0.244 Sum_probs=79.9
Q ss_pred CCCcEEEEcCCccHHHHHHHHH--CCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCCCcEe
Q 026219 124 TLPLMVDIGSGSGRFLIWLARR--NPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYPGPLM 200 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~--~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~~d 200 (241)
++.+|||||||+|..+..+++. .|+ ++++|+|+|+.|++.|+++++..+.. +++++++|+.+ .+ ...+|
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~-~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~-----~~--~~~~D 127 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDN-CKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRD-----IA--IENAS 127 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCC-CeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhh-----CC--CCCCC
Confidence 4689999999999999999884 466 89999999999999999999877664 79999999875 22 23467
Q ss_pred EEEEeCCCCch--hhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 201 LVSILCPDPHF--KKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 201 ~V~~~~~~~~~--~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
.|+.++...+. .++ ..+++++++.|||||.+++
T Consensus 128 ~vv~~~~l~~l~~~~~--------~~~l~~i~~~LkpGG~l~l 162 (247)
T PRK15451 128 MVVLNFTLQFLEPSER--------QALLDKIYQGLNPGGALVL 162 (247)
T ss_pred EEehhhHHHhCCHHHH--------HHHHHHHHHhcCCCCEEEE
Confidence 76654432111 111 4899999999999999875
No 34
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.59 E-value=1.4e-14 Score=120.94 Aligned_cols=102 Identities=10% Similarity=0.045 Sum_probs=76.7
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS 203 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~ 203 (241)
+..+|||+|||+|..+..++++ + ..|+|+|+|+.|++.++++++..+++ +++..+|+.. .+ .+.++|.|+
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~--g-~~V~~iD~s~~~l~~a~~~~~~~~~~-v~~~~~d~~~-----~~-~~~~fD~I~ 99 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLA--G-YDVRAWDHNPASIASVLDMKARENLP-LRTDAYDINA-----AA-LNEDYDFIF 99 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHC--C-CeEEEEECCHHHHHHHHHHHHHhCCC-ceeEeccchh-----cc-ccCCCCEEE
Confidence 3579999999999999999986 4 57999999999999999988877764 7778888753 11 245788886
Q ss_pred EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
......+... .....++++++++|||||++++
T Consensus 100 ~~~~~~~~~~------~~~~~~l~~~~~~LkpgG~lli 131 (195)
T TIGR00477 100 STVVFMFLQA------GRVPEIIANMQAHTRPGGYNLI 131 (195)
T ss_pred EecccccCCH------HHHHHHHHHHHHHhCCCcEEEE
Confidence 5533221110 0114899999999999998553
No 35
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.59 E-value=4.5e-16 Score=115.47 Aligned_cols=99 Identities=29% Similarity=0.425 Sum_probs=65.6
Q ss_pred EEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEEeCCC
Q 026219 129 VDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSILCPD 208 (241)
Q Consensus 129 LDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~~~~ 208 (241)
||||||+|.++..+.+.++. .+++|+|+|+.|++.++++..+.+..+...+..+..+.... ..+++||.|+....-
T Consensus 1 LdiGcG~G~~~~~l~~~~~~-~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~fD~V~~~~vl 76 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPD-ARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDY---DPPESFDLVVASNVL 76 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-E-EEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---C---CC----SEEEEE-TT
T ss_pred CEeCccChHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhc---ccccccceehhhhhH
Confidence 79999999999999999988 89999999999999999998887655666666555542111 112589999877766
Q ss_pred CchhhhhhhcccchHHHHHHHHhccccCCEE
Q 026219 209 PHFKKKHHKRRVVQKPLVDSIIDYLMPGGKV 239 (241)
Q Consensus 209 ~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l 239 (241)
.|.++. +.++++++++|||||.|
T Consensus 77 ~~l~~~--------~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 77 HHLEDI--------EAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S--S-H--------HHHHHHHTTT-TSS-EE
T ss_pred hhhhhH--------HHHHHHHHHHcCCCCCC
Confidence 665443 49999999999999986
No 36
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.59 E-value=2e-14 Score=121.53 Aligned_cols=103 Identities=18% Similarity=0.315 Sum_probs=82.4
Q ss_pred hcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcE
Q 026219 120 YKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPL 199 (241)
Q Consensus 120 ~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~ 199 (241)
....++.+|||||||+|..+..+++..+..++|+|+|+++++++.++++++..+..|++++.+|+.+.+ ..++.|
T Consensus 72 l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~-----~~~~~f 146 (212)
T PRK13942 72 LDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGY-----EENAPY 146 (212)
T ss_pred cCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCC-----CcCCCc
Confidence 333457899999999999999999886432689999999999999999999888889999999997531 124779
Q ss_pred eEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 200 MLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 200 d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
|.|++...-+ .+.+.+.+.|||||++++
T Consensus 147 D~I~~~~~~~--------------~~~~~l~~~LkpgG~lvi 174 (212)
T PRK13942 147 DRIYVTAAGP--------------DIPKPLIEQLKDGGIMVI 174 (212)
T ss_pred CEEEECCCcc--------------cchHHHHHhhCCCcEEEE
Confidence 9988765432 334567789999999875
No 37
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.59 E-value=1.4e-14 Score=124.28 Aligned_cols=104 Identities=16% Similarity=0.209 Sum_probs=80.8
Q ss_pred CCCcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCCCcEe
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYPGPLM 200 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~~~~d 200 (241)
++.+|||||||+|.++..+++++ |+ ++++|+|+|++|++.|+++++..+. .+++++++|+.+ .+ ...+|
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~-~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~-----~~--~~~~d 124 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPN-VKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRH-----VE--IKNAS 124 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCC-CeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhh-----CC--CCCCC
Confidence 46789999999999999999874 56 8999999999999999999877654 479999999975 22 12367
Q ss_pred EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
.|++.+..++.... -...++++++++|||||.+++
T Consensus 125 ~v~~~~~l~~~~~~------~~~~~l~~i~~~LkpgG~l~i 159 (239)
T TIGR00740 125 MVILNFTLQFLPPE------DRIALLTKIYEGLNPNGVLVL 159 (239)
T ss_pred EEeeecchhhCCHH------HHHHHHHHHHHhcCCCeEEEE
Confidence 77666544332111 014899999999999999875
No 38
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.59 E-value=1.2e-14 Score=126.69 Aligned_cols=110 Identities=18% Similarity=0.213 Sum_probs=83.6
Q ss_pred hhHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccC
Q 026219 115 DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSS 194 (241)
Q Consensus 115 ~~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~ 194 (241)
.+...+...++.+|||||||+|..+..+++.+ + ++|+|+|+|++|++.|+++... ..++.++.+|+.+ .+.
T Consensus 43 ~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~-~-~~v~giD~s~~~~~~a~~~~~~--~~~i~~~~~D~~~-----~~~ 113 (263)
T PTZ00098 43 KILSDIELNENSKVLDIGSGLGGGCKYINEKY-G-AHVHGVDICEKMVNIAKLRNSD--KNKIEFEANDILK-----KDF 113 (263)
T ss_pred HHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc-C-CEEEEEECCHHHHHHHHHHcCc--CCceEEEECCccc-----CCC
Confidence 34444444457899999999999999998875 4 6899999999999999987643 2579999999975 333
Q ss_pred CCCcEeEEEEeCCCCch--hhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 195 YPGPLMLVSILCPDPHF--KKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 195 ~~~~~d~V~~~~~~~~~--~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
++++||+|+......+. .+. ..++++++++|||||.|+|
T Consensus 114 ~~~~FD~V~s~~~l~h~~~~d~--------~~~l~~i~r~LkPGG~lvi 154 (263)
T PTZ00098 114 PENTFDMIYSRDAILHLSYADK--------KKLFEKCYKWLKPNGILLI 154 (263)
T ss_pred CCCCeEEEEEhhhHHhCCHHHH--------HHHHHHHHHHcCCCcEEEE
Confidence 46889998764321111 122 4899999999999999975
No 39
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.58 E-value=3.3e-14 Score=119.56 Aligned_cols=99 Identities=15% Similarity=0.219 Sum_probs=80.7
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCCCcEeEE
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYPGPLMLV 202 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~~d~V 202 (241)
++.+|||||||+|..+..+++..+..++|+|+|+++++++.|+++++..+.. +++++.+|+.+.+ . .++.||.|
T Consensus 72 ~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~----~-~~~~fD~I 146 (205)
T PRK13944 72 PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGL----E-KHAPFDAI 146 (205)
T ss_pred CCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCC----c-cCCCccEE
Confidence 4689999999999999999988752268999999999999999999988875 5999999997632 1 24689998
Q ss_pred EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
++....+ .+.+++.+.|+|||++++
T Consensus 147 i~~~~~~--------------~~~~~l~~~L~~gG~lvi 171 (205)
T PRK13944 147 IVTAAAS--------------TIPSALVRQLKDGGVLVI 171 (205)
T ss_pred EEccCcc--------------hhhHHHHHhcCcCcEEEE
Confidence 8776543 344578899999999875
No 40
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.58 E-value=3.1e-14 Score=129.78 Aligned_cols=112 Identities=19% Similarity=0.168 Sum_probs=86.5
Q ss_pred hcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC---CCEEEEEccccchHHhhccCCC
Q 026219 120 YKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL---SNIHFLFANASVSFKQLVSSYP 196 (241)
Q Consensus 120 ~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l---~ni~~~~~D~~~~~~~~~~~~~ 196 (241)
++.....+|||+|||+|.+++.+++++|. .+|+++|+|+.+++.|+++++.++. .+++++.+|+.+. . .+
T Consensus 224 lp~~~~~~VLDLGCGtGvi~i~la~~~P~-~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~----~--~~ 296 (378)
T PRK15001 224 LPENLEGEIVDLGCGNGVIGLTLLDKNPQ-AKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG----V--EP 296 (378)
T ss_pred CCcccCCeEEEEeccccHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc----C--CC
Confidence 33333468999999999999999999998 8999999999999999999987764 3689999988641 1 24
Q ss_pred CcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 197 GPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 197 ~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
.+||.|+.+.|-..... ....+..++++.+.+.|+|||.++|
T Consensus 297 ~~fDlIlsNPPfh~~~~---~~~~ia~~l~~~a~~~LkpGG~L~i 338 (378)
T PRK15001 297 FRFNAVLCNPPFHQQHA---LTDNVAWEMFHHARRCLKINGELYI 338 (378)
T ss_pred CCEEEEEECcCcccCcc---CCHHHHHHHHHHHHHhcccCCEEEE
Confidence 68999998765422110 0011235899999999999999875
No 41
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.57 E-value=2.4e-14 Score=122.86 Aligned_cols=114 Identities=24% Similarity=0.332 Sum_probs=92.4
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCCCcEeEE
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYPGPLMLV 202 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~~~~d~V 202 (241)
...+|||||||+|..++.++++.++ .+++|||+++++.+.|+++++.+++ ++++++++|+.++.... ...+||.|
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~---~~~~fD~I 119 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKAL---VFASFDLI 119 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcc---cccccCEE
Confidence 3689999999999999999999888 8999999999999999999999888 57999999998754332 13469999
Q ss_pred EEeCCC----------CchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 203 SILCPD----------PHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 203 ~~~~~~----------~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
+.+.|- ++....+++-....+++++...++|||||.+.|
T Consensus 120 i~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~ 168 (248)
T COG4123 120 ICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAF 168 (248)
T ss_pred EeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEE
Confidence 887542 222222333445678999999999999999875
No 42
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.56 E-value=1.8e-14 Score=122.02 Aligned_cols=100 Identities=26% Similarity=0.366 Sum_probs=80.1
Q ss_pred cEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCCCcEeEEEEe
Q 026219 127 LMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYPGPLMLVSIL 205 (241)
Q Consensus 127 ~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~ 205 (241)
+|||||||+|..+..+++.+++ .+++|+|+|+++++.++++++..++. +++++.+|+.+. + .+++||.|+..
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~-~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~-----~-~~~~fD~I~~~ 74 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPH-LQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD-----P-FPDTYDLVFGF 74 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC-----C-CCCCCCEeehH
Confidence 6999999999999999999887 89999999999999999999887774 689999998641 1 24678988643
Q ss_pred CCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 206 CPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 206 ~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
....+..+. ..+++++.++|||||.+++
T Consensus 75 ~~l~~~~~~--------~~~l~~~~~~LkpgG~l~i 102 (224)
T smart00828 75 EVIHHIKDK--------MDLFSNISRHLKDGGHLVL 102 (224)
T ss_pred HHHHhCCCH--------HHHHHHHHHHcCCCCEEEE
Confidence 211111111 4999999999999999875
No 43
>PRK04266 fibrillarin; Provisional
Probab=99.56 E-value=3.8e-14 Score=121.02 Aligned_cols=104 Identities=14% Similarity=0.150 Sum_probs=81.6
Q ss_pred CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219 123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV 202 (241)
Q Consensus 123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V 202 (241)
.++.+|||+|||+|.++..+++..+. +.|+|+|++++|++.+.+++++. .|+.++.+|+.+.. ...+ .+..+|.|
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v~~-g~V~avD~~~~ml~~l~~~a~~~--~nv~~i~~D~~~~~-~~~~-l~~~~D~i 145 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIVEE-GVVYAVEFAPRPMRELLEVAEER--KNIIPILADARKPE-RYAH-VVEKVDVI 145 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhcCC-CeEEEEECCHHHHHHHHHHhhhc--CCcEEEECCCCCcc-hhhh-ccccCCEE
Confidence 34789999999999999999998875 78999999999999888777643 68999999987521 0011 23569988
Q ss_pred EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
++..++||.. ..+++++.++|||||.++|
T Consensus 146 ~~d~~~p~~~----------~~~L~~~~r~LKpGG~lvI 174 (226)
T PRK04266 146 YQDVAQPNQA----------EIAIDNAEFFLKDGGYLLL 174 (226)
T ss_pred EECCCChhHH----------HHHHHHHHHhcCCCcEEEE
Confidence 8776665421 2678999999999999875
No 44
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.56 E-value=2.3e-14 Score=123.69 Aligned_cols=101 Identities=15% Similarity=0.209 Sum_probs=79.1
Q ss_pred hcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcE
Q 026219 120 YKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPL 199 (241)
Q Consensus 120 ~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~ 199 (241)
+...+..+|||||||+|.++..+++. + .+++|+|+|++|++.++++. ....++.+|+.+ .+.++++|
T Consensus 38 l~~~~~~~vLDiGcG~G~~~~~l~~~--~-~~v~~~D~s~~~l~~a~~~~-----~~~~~~~~d~~~-----~~~~~~~f 104 (251)
T PRK10258 38 LPQRKFTHVLDAGCGPGWMSRYWRER--G-SQVTALDLSPPMLAQARQKD-----AADHYLAGDIES-----LPLATATF 104 (251)
T ss_pred cCccCCCeEEEeeCCCCHHHHHHHHc--C-CeEEEEECCHHHHHHHHhhC-----CCCCEEEcCccc-----CcCCCCcE
Confidence 33334578999999999999998875 4 57999999999999998753 235688899875 33356789
Q ss_pred eEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 200 MLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 200 d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
|.|+.+....|..+. ..+++++.++|||||.++|
T Consensus 105 D~V~s~~~l~~~~d~--------~~~l~~~~~~Lk~gG~l~~ 138 (251)
T PRK10258 105 DLAWSNLAVQWCGNL--------STALRELYRVVRPGGVVAF 138 (251)
T ss_pred EEEEECchhhhcCCH--------HHHHHHHHHHcCCCeEEEE
Confidence 999877665554433 4899999999999999875
No 45
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.56 E-value=6.5e-14 Score=114.86 Aligned_cols=101 Identities=19% Similarity=0.292 Sum_probs=87.5
Q ss_pred CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219 123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV 202 (241)
Q Consensus 123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V 202 (241)
.++.+++|||||||+.++.++...|. ++|++||.++++++..++|+++.+.+|++++.+|+.+.++. .+ .+|.+
T Consensus 33 ~~g~~l~DIGaGtGsi~iE~a~~~p~-~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~----~~-~~dai 106 (187)
T COG2242 33 RPGDRLWDIGAGTGSITIEWALAGPS-GRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPD----LP-SPDAI 106 (187)
T ss_pred CCCCEEEEeCCCccHHHHHHHHhCCC-ceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcC----CC-CCCEE
Confidence 35789999999999999999988888 99999999999999999999999999999999999875432 23 68888
Q ss_pred EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
++.-.-. . +.+++.+...|||||+++.
T Consensus 107 FIGGg~~-i-----------~~ile~~~~~l~~ggrlV~ 133 (187)
T COG2242 107 FIGGGGN-I-----------EEILEAAWERLKPGGRLVA 133 (187)
T ss_pred EECCCCC-H-----------HHHHHHHHHHcCcCCeEEE
Confidence 8875532 1 5999999999999999874
No 46
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.55 E-value=8.6e-14 Score=116.31 Aligned_cols=103 Identities=14% Similarity=0.214 Sum_probs=83.4
Q ss_pred CCCCcEEEEcCCccHHHHHHHHHC-CCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCCCcEe
Q 026219 123 PTLPLMVDIGSGSGRFLIWLARRN-PDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYPGPLM 200 (241)
Q Consensus 123 ~~~~~VLDIGCGtG~~~~~la~~~-p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~~~~d 200 (241)
.++.+|||+|||+|.++..+++.. +. .+|+++|+++.+++.++++++..++ .++.++.+|+.+.++. .+..+|
T Consensus 39 ~~~~~vlDlG~GtG~~s~~~a~~~~~~-~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~----~~~~~D 113 (198)
T PRK00377 39 RKGDMILDIGCGTGSVTVEASLLVGET-GKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFT----INEKFD 113 (198)
T ss_pred CCcCEEEEeCCcCCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhh----cCCCCC
Confidence 357899999999999999998865 44 6899999999999999999998884 6899999999764322 235789
Q ss_pred EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
.|++....... ..+++.+.++|||||++++
T Consensus 114 ~V~~~~~~~~~-----------~~~l~~~~~~LkpgG~lv~ 143 (198)
T PRK00377 114 RIFIGGGSEKL-----------KEIISASWEIIKKGGRIVI 143 (198)
T ss_pred EEEECCCcccH-----------HHHHHHHHHHcCCCcEEEE
Confidence 88875432211 4899999999999999874
No 47
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.54 E-value=3e-14 Score=124.93 Aligned_cols=103 Identities=20% Similarity=0.306 Sum_probs=75.9
Q ss_pred CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCCCcEeE
Q 026219 123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYPGPLML 201 (241)
Q Consensus 123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~~d~ 201 (241)
.++.+|||||||.|.+++.+++++ + ++|+||++|+++.+.+++++++.|+. ++++..+|..+ + +..||.
T Consensus 61 ~~G~~vLDiGcGwG~~~~~~a~~~-g-~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~-----~---~~~fD~ 130 (273)
T PF02353_consen 61 KPGDRVLDIGCGWGGLAIYAAERY-G-CHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRD-----L---PGKFDR 130 (273)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-----------S-SE
T ss_pred CCCCEEEEeCCCccHHHHHHHHHc-C-cEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccc-----c---CCCCCE
Confidence 458899999999999999999998 5 79999999999999999999999985 59999999875 2 348888
Q ss_pred EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
|+..-...+.. +...+.+++++.++|||||++++
T Consensus 131 IvSi~~~Ehvg------~~~~~~~f~~~~~~LkpgG~~~l 164 (273)
T PF02353_consen 131 IVSIEMFEHVG------RKNYPAFFRKISRLLKPGGRLVL 164 (273)
T ss_dssp EEEESEGGGTC------GGGHHHHHHHHHHHSETTEEEEE
T ss_pred EEEEechhhcC------hhHHHHHHHHHHHhcCCCcEEEE
Confidence 76542222221 11225999999999999999875
No 48
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.54 E-value=6.4e-14 Score=131.54 Aligned_cols=102 Identities=20% Similarity=0.271 Sum_probs=80.6
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS 203 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~ 203 (241)
++.+|||||||+|..+..+++.. + ++|+|+|+|+++++.|+++....+ .+++++.+|+.+ .+.++++||.|+
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~-~-~~v~gvDiS~~~l~~A~~~~~~~~-~~v~~~~~d~~~-----~~~~~~~fD~I~ 337 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENF-D-VHVVGIDLSVNMISFALERAIGRK-CSVEFEVADCTK-----KTYPDNSFDVIY 337 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhc-C-CEEEEEECCHHHHHHHHHHhhcCC-CceEEEEcCccc-----CCCCCCCEEEEE
Confidence 46799999999999999999876 5 689999999999999998765322 379999999875 233467899987
Q ss_pred EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
....-.|..++ ..++++++++|||||+++|
T Consensus 338 s~~~l~h~~d~--------~~~l~~~~r~LkpgG~l~i 367 (475)
T PLN02336 338 SRDTILHIQDK--------PALFRSFFKWLKPGGKVLI 367 (475)
T ss_pred ECCcccccCCH--------HHHHHHHHHHcCCCeEEEE
Confidence 64333333332 4999999999999999875
No 49
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.54 E-value=7.4e-14 Score=121.88 Aligned_cols=107 Identities=17% Similarity=0.239 Sum_probs=83.7
Q ss_pred HhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCCC
Q 026219 119 VYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYPG 197 (241)
Q Consensus 119 ~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~ 197 (241)
.+...++.+|||||||.|.+++.+|+++ + .+|+|+++|+++.+.+++++++.|++ +++++..|-.+ + ++
T Consensus 67 kl~L~~G~~lLDiGCGWG~l~~~aA~~y-~-v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd-----~---~e 136 (283)
T COG2230 67 KLGLKPGMTLLDIGCGWGGLAIYAAEEY-G-VTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRD-----F---EE 136 (283)
T ss_pred hcCCCCCCEEEEeCCChhHHHHHHHHHc-C-CEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccc-----c---cc
Confidence 3444568999999999999999999998 4 68999999999999999999999997 89999888876 2 34
Q ss_pred cEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 198 PLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 198 ~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
.||.|+..-.-.+.- ..-.+.+++.+.++|+|||.+++
T Consensus 137 ~fDrIvSvgmfEhvg------~~~~~~ff~~~~~~L~~~G~~ll 174 (283)
T COG2230 137 PFDRIVSVGMFEHVG------KENYDDFFKKVYALLKPGGRMLL 174 (283)
T ss_pred ccceeeehhhHHHhC------cccHHHHHHHHHhhcCCCceEEE
Confidence 488765321100110 01125999999999999999874
No 50
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.53 E-value=1.6e-13 Score=117.74 Aligned_cols=111 Identities=22% Similarity=0.278 Sum_probs=86.1
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS 203 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~ 203 (241)
...+|||+|||+|.++..+++.+++ ..++|+|+++.+++.++++++..++.+++++.+|+.+. . .++++|.|+
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~-~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~----~--~~~~fD~Vi 159 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPD-ARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEP----L--PGGKFDLIV 159 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhcc----C--cCCceeEEE
Confidence 3468999999999999999999887 89999999999999999999988888899999998752 1 257899998
Q ss_pred EeCCCCchhhhh----h----h----------cccchHHHHHHHHhccccCCEEEc
Q 026219 204 ILCPDPHFKKKH----H----K----------RRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 204 ~~~~~~~~~~~~----~----~----------~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
.+.|-......+ . + .......+++++.++|+|||.+++
T Consensus 160 ~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~ 215 (251)
T TIGR03534 160 SNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLL 215 (251)
T ss_pred ECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEE
Confidence 865421100000 0 0 001235789999999999999875
No 51
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.53 E-value=6.1e-14 Score=122.77 Aligned_cols=93 Identities=23% Similarity=0.323 Sum_probs=74.6
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCC--cEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeE
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDS--GNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLML 201 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~--~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~ 201 (241)
...+|||||||+|.++..+++..+.. ..++|+|+|++|++.|+++ .+++.+.++|+.+ .+..+++||.
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~-----~~~~~~~~~d~~~-----lp~~~~sfD~ 154 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR-----YPQVTFCVASSHR-----LPFADQSLDA 154 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh-----CCCCeEEEeeccc-----CCCcCCceeE
Confidence 35789999999999999999887631 3799999999999998764 2578999999876 3445789999
Q ss_pred EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
|+..+. | ..++++.|+|||||.+++
T Consensus 155 I~~~~~-~--------------~~~~e~~rvLkpgG~li~ 179 (272)
T PRK11088 155 IIRIYA-P--------------CKAEELARVVKPGGIVIT 179 (272)
T ss_pred EEEecC-C--------------CCHHHHHhhccCCCEEEE
Confidence 876653 2 446789999999999874
No 52
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.53 E-value=7.2e-14 Score=118.43 Aligned_cols=99 Identities=20% Similarity=0.347 Sum_probs=81.2
Q ss_pred CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEE
Q 026219 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSI 204 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~ 204 (241)
..+|||||||+|.++..+++.++. ..++|+|+++++++.++++.. +++.++.+|+.+ .+.++.++|+|+.
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~-~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~~-----~~~~~~~fD~vi~ 104 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQ-AEFIALDISAGMLAQAKTKLS----ENVQFICGDAEK-----LPLEDSSFDLIVS 104 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCC-CcEEEEeChHHHHHHHHHhcC----CCCeEEecchhh-----CCCCCCceeEEEE
Confidence 468999999999999999999887 789999999999999887653 478899999975 2334678999987
Q ss_pred eCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 205 LCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 205 ~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
.....|..+. ..+++++.++|+|||.+++
T Consensus 105 ~~~l~~~~~~--------~~~l~~~~~~L~~~G~l~~ 133 (240)
T TIGR02072 105 NLALQWCDDL--------SQALSELARVLKPGGLLAF 133 (240)
T ss_pred hhhhhhccCH--------HHHHHHHHHHcCCCcEEEE
Confidence 7654444333 4899999999999999875
No 53
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.52 E-value=1.2e-13 Score=121.78 Aligned_cols=102 Identities=16% Similarity=0.174 Sum_probs=79.0
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS 203 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~ 203 (241)
+..+|||||||+|..+..++++ + .+|+|+|+|+.+++.++++++..++ ++++...|+.. .. .+++||.|+
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~--g-~~V~avD~s~~ai~~~~~~~~~~~l-~v~~~~~D~~~-----~~-~~~~fD~I~ 189 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL--G-FDVTAVDINQQSLENLQEIAEKENL-NIRTGLYDINS-----AS-IQEEYDFIL 189 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC--C-CEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEechhc-----cc-ccCCccEEE
Confidence 3469999999999999999986 4 6899999999999999999988887 79999888864 11 257899886
Q ss_pred EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
......+... .....+++++.++|+|||.+++
T Consensus 190 ~~~vl~~l~~------~~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 190 STVVLMFLNR------ERIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred EcchhhhCCH------HHHHHHHHHHHHhcCCCcEEEE
Confidence 5543211110 0114899999999999998653
No 54
>PRK08317 hypothetical protein; Provisional
Probab=99.52 E-value=2.1e-13 Score=115.40 Aligned_cols=104 Identities=23% Similarity=0.283 Sum_probs=81.1
Q ss_pred CCCCcEEEEcCCccHHHHHHHHHC-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeE
Q 026219 123 PTLPLMVDIGSGSGRFLIWLARRN-PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLML 201 (241)
Q Consensus 123 ~~~~~VLDIGCGtG~~~~~la~~~-p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~ 201 (241)
.++.+|||+|||+|.++..+++.+ +. ++++|+|+|+.+++.++++.. ....+++++.+|+.+ .+..++.+|.
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~-~~v~~~d~~~~~~~~a~~~~~-~~~~~~~~~~~d~~~-----~~~~~~~~D~ 90 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVGPE-GRVVGIDRSEAMLALAKERAA-GLGPNVEFVRGDADG-----LPFPDGSFDA 90 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCC-cEEEEEeCCHHHHHHHHHHhh-CCCCceEEEeccccc-----CCCCCCCceE
Confidence 346799999999999999999987 56 799999999999999988732 233579999999875 2234578998
Q ss_pred EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
|+......+..+. ..+++++.++|||||.+++
T Consensus 91 v~~~~~~~~~~~~--------~~~l~~~~~~L~~gG~l~~ 122 (241)
T PRK08317 91 VRSDRVLQHLEDP--------ARALAEIARVLRPGGRVVV 122 (241)
T ss_pred EEEechhhccCCH--------HHHHHHHHHHhcCCcEEEE
Confidence 8765433222222 4899999999999999864
No 55
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.52 E-value=8.8e-14 Score=125.15 Aligned_cols=101 Identities=14% Similarity=0.066 Sum_probs=80.3
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS 203 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~ 203 (241)
.+.+|||||||+|.++..+++..++ .+++|+|+|++|++.|+++.. ..+++++.+|+.+ .+..+++||.|+
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~-~~VtgVD~S~~mL~~A~~k~~---~~~i~~i~gD~e~-----lp~~~~sFDvVI 183 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEP---LKECKIIEGDAED-----LPFPTDYADRYV 183 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHhhh---ccCCeEEeccHHh-----CCCCCCceeEEE
Confidence 3579999999999999999998877 789999999999999998753 3478899999975 333467899887
Q ss_pred EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
....-.+..+. +.++++++++|||||++++
T Consensus 184 s~~~L~~~~d~--------~~~L~e~~rvLkPGG~LvI 213 (340)
T PLN02490 184 SAGSIEYWPDP--------QRGIKEAYRVLKIGGKACL 213 (340)
T ss_pred EcChhhhCCCH--------HHHHHHHHHhcCCCcEEEE
Confidence 65433222222 3899999999999999864
No 56
>PRK06922 hypothetical protein; Provisional
Probab=99.51 E-value=1.1e-13 Score=132.33 Aligned_cols=113 Identities=16% Similarity=0.190 Sum_probs=83.4
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS 203 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~ 203 (241)
++.+|||||||+|..+..+++.+|+ .+++|+|+|+.|++.|+++....+ .+++++++|+.+ ++.. ..++++|.|+
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~-~kVtGIDIS~~MLe~Ararl~~~g-~~ie~I~gDa~d-Lp~~--fedeSFDvVV 492 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETED-KRIYGIDISENVIDTLKKKKQNEG-RSWNVIKGDAIN-LSSS--FEKESVDTIV 492 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHhhhcC-CCeEEEEcchHh-Cccc--cCCCCEEEEE
Confidence 3689999999999999999999988 899999999999999998876544 368899999875 2211 2468899987
Q ss_pred EeCCCCchhh-----hhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 204 ILCPDPHFKK-----KHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 204 ~~~~~~~~~~-----~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
..++..+... ...-.......++++++++|||||.++|
T Consensus 493 sn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII 535 (677)
T PRK06922 493 YSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIII 535 (677)
T ss_pred EchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEE
Confidence 6543221100 0000001225899999999999999975
No 57
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.50 E-value=2.3e-13 Score=122.02 Aligned_cols=103 Identities=17% Similarity=0.183 Sum_probs=77.2
Q ss_pred CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhC-CCCEEEEEccccchHHhhccCCCCcEeE
Q 026219 123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELA-LSNIHFLFANASVSFKQLVSSYPGPLML 201 (241)
Q Consensus 123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~-l~ni~~~~~D~~~~~~~~~~~~~~~~d~ 201 (241)
.++.+|||||||+|.++..+++.++. .|+|+|+|+.++..++...+..+ ..++.++.+|+.+ ++. ++.||.
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g~~--~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~-----lp~-~~~FD~ 192 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAGAK--LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQ-----LPA-LKAFDT 192 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHH-----CCC-cCCcCE
Confidence 45789999999999999999998665 69999999999876554333322 2479999999875 332 577998
Q ss_pred EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
|+....-.|..+. ..+++++++.|+|||.++|
T Consensus 193 V~s~~vl~H~~dp--------~~~L~~l~~~LkpGG~lvl 224 (322)
T PRK15068 193 VFSMGVLYHRRSP--------LDHLKQLKDQLVPGGELVL 224 (322)
T ss_pred EEECChhhccCCH--------HHHHHHHHHhcCCCcEEEE
Confidence 8754322222222 4899999999999999875
No 58
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.50 E-value=3e-13 Score=119.25 Aligned_cols=110 Identities=16% Similarity=0.187 Sum_probs=85.4
Q ss_pred CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCCCcEeEEE
Q 026219 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYPGPLMLVS 203 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~~d~V~ 203 (241)
..+|||+|||+|.+++.+++..++ .+|+|+|+|+.+++.|++|++.+++. +++++.+|+.+. + ++..||.|+
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~-~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~----~--~~~~fD~Iv 194 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPE-AEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA----L--PGRKYDLIV 194 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc----c--CCCCccEEE
Confidence 468999999999999999999887 89999999999999999999988874 699999998652 2 245799988
Q ss_pred EeCCCCc-------hhhhhhh----------cccchHHHHHHHHhccccCCEEEc
Q 026219 204 ILCPDPH-------FKKKHHK----------RRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 204 ~~~~~~~-------~~~~~~~----------~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
.+.|--. .+.-+++ ....++.+++.+.+.|+|||++++
T Consensus 195 ~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~ 249 (284)
T TIGR03533 195 SNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVV 249 (284)
T ss_pred ECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 8744210 0000001 112457889999999999999875
No 59
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.50 E-value=3.2e-13 Score=121.98 Aligned_cols=110 Identities=15% Similarity=0.154 Sum_probs=85.2
Q ss_pred hcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcE
Q 026219 120 YKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPL 199 (241)
Q Consensus 120 ~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~ 199 (241)
+..+...+|||+|||+|.++..+++++|+ .+|+++|+|+.+++.++++++.+++. .+++.+|+.+. .++.|
T Consensus 192 l~~~~~g~VLDlGCG~G~ls~~la~~~p~-~~v~~vDis~~Al~~A~~nl~~n~l~-~~~~~~D~~~~-------~~~~f 262 (342)
T PRK09489 192 LTPHTKGKVLDVGCGAGVLSAVLARHSPK-IRLTLSDVSAAALESSRATLAANGLE-GEVFASNVFSD-------IKGRF 262 (342)
T ss_pred ccccCCCeEEEeccCcCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEcccccc-------cCCCc
Confidence 43333568999999999999999999988 79999999999999999999988764 57788887541 25789
Q ss_pred eEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 200 MLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 200 d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
|.|+.+.|-.+... ......+.+++++.+.|||||.++|
T Consensus 263 DlIvsNPPFH~g~~---~~~~~~~~~i~~a~~~LkpgG~L~i 301 (342)
T PRK09489 263 DMIISNPPFHDGIQ---TSLDAAQTLIRGAVRHLNSGGELRI 301 (342)
T ss_pred cEEEECCCccCCcc---ccHHHHHHHHHHHHHhcCcCCEEEE
Confidence 99998765432100 0011236999999999999999875
No 60
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.49 E-value=3.2e-13 Score=115.90 Aligned_cols=106 Identities=16% Similarity=0.267 Sum_probs=87.5
Q ss_pred CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccC-CCCcEeEE
Q 026219 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSS-YPGPLMLV 202 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~-~~~~~d~V 202 (241)
..+|||||||+|..++.+++..+..++++++|+++++++.|++++++.++. +++++.+|+.+.++.+.+. .++.||.|
T Consensus 69 ~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~V 148 (234)
T PLN02781 69 AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFA 148 (234)
T ss_pred CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEE
Confidence 578999999999999999987664489999999999999999999999985 6999999999877665432 24689998
Q ss_pred EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
++....+ .+..+++.+.++|+|||.+++
T Consensus 149 fiDa~k~-----------~y~~~~~~~~~ll~~GG~ii~ 176 (234)
T PLN02781 149 FVDADKP-----------NYVHFHEQLLKLVKVGGIIAF 176 (234)
T ss_pred EECCCHH-----------HHHHHHHHHHHhcCCCeEEEE
Confidence 8764322 124889999999999999874
No 61
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.49 E-value=3.2e-13 Score=110.93 Aligned_cols=107 Identities=18% Similarity=0.229 Sum_probs=81.0
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS 203 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~ 203 (241)
++.+|||+|||+|.++..+++..+ +|+|+|+|+++++.++++++.++. +++++.+|+.+. .++++|.|+
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~-------~~~~fD~Vi 87 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNV-GLDVVMTDLFKG-------VRGKFDVIL 87 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCC-ceEEEEcccccc-------cCCcccEEE
Confidence 357899999999999999998754 699999999999999999987775 689999998651 245899988
Q ss_pred EeCCCCchhhhhh-------------hcccchHHHHHHHHhccccCCEEEc
Q 026219 204 ILCPDPHFKKKHH-------------KRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 204 ~~~~~~~~~~~~~-------------~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
.+.|-........ ..+.+.+.+++++.++|||||++++
T Consensus 88 ~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~ 138 (179)
T TIGR00537 88 FNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQL 138 (179)
T ss_pred ECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEE
Confidence 7754311110000 0112356899999999999999864
No 62
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.49 E-value=7.1e-14 Score=113.69 Aligned_cols=103 Identities=28% Similarity=0.389 Sum_probs=77.6
Q ss_pred CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCC-EEEEEccccchHHhhccCCCCcEeEEE
Q 026219 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IHFLFANASVSFKQLVSSYPGPLMLVS 203 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~n-i~~~~~D~~~~~~~~~~~~~~~~d~V~ 203 (241)
.++|||+|||+|.++..|++..=. ..++|+|.|+++++.|+..++..+.+| |+|.+.|+.+. .+.+++||+|.
T Consensus 68 A~~VlDLGtGNG~~L~~L~~egf~-~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~-----~~~~~qfdlvl 141 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEGFQ-SKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP-----DFLSGQFDLVL 141 (227)
T ss_pred ccceeeccCCchHHHHHHHHhcCC-CCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC-----cccccceeEEe
Confidence 459999999999999999987433 369999999999999999999999887 99999999862 22345566552
Q ss_pred --------EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 204 --------ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 204 --------~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
...|+. +. .|+. .++..+.++|+|||+++|
T Consensus 142 DKGT~DAisLs~d~-~~----~r~~---~Y~d~v~~ll~~~gifvI 179 (227)
T KOG1271|consen 142 DKGTLDAISLSPDG-PV----GRLV---VYLDSVEKLLSPGGIFVI 179 (227)
T ss_pred ecCceeeeecCCCC-cc----ccee---eehhhHhhccCCCcEEEE
Confidence 122331 11 1223 567778888999999986
No 63
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.48 E-value=1.7e-13 Score=116.14 Aligned_cols=114 Identities=13% Similarity=0.111 Sum_probs=75.4
Q ss_pred hhHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHH------------hCCCCEEEEEc
Q 026219 115 DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQE------------LALSNIHFLFA 182 (241)
Q Consensus 115 ~~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~------------~~l~ni~~~~~ 182 (241)
++...+..+++.+|||+|||.|..+..||++ + ..|+|+|+|+.+++.+.+.... ....+++++++
T Consensus 25 ~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~--G-~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 101 (213)
T TIGR03840 25 KHWPALGLPAGARVFVPLCGKSLDLAWLAEQ--G-HRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCG 101 (213)
T ss_pred HHHHhhCCCCCCeEEEeCCCchhHHHHHHhC--C-CeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEc
Confidence 4444432234689999999999999999987 4 6799999999999986442110 01136899999
Q ss_pred cccchHHhhccCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 183 NASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 183 D~~~~~~~~~~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
|+.+......+.+|..+|..+++...+ ..+ ..+++.+.++|||||++++
T Consensus 102 D~~~~~~~~~~~fD~i~D~~~~~~l~~--~~R--------~~~~~~l~~lLkpgG~~ll 150 (213)
T TIGR03840 102 DFFALTAADLGPVDAVYDRAALIALPE--EMR--------QRYAAHLLALLPPGARQLL 150 (213)
T ss_pred cCCCCCcccCCCcCEEEechhhccCCH--HHH--------HHHHHHHHHHcCCCCeEEE
Confidence 997632111122344555443332222 122 4899999999999997553
No 64
>PRK05785 hypothetical protein; Provisional
Probab=99.48 E-value=2.6e-13 Score=115.85 Aligned_cols=90 Identities=7% Similarity=-0.004 Sum_probs=72.7
Q ss_pred CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEE
Q 026219 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSI 204 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~ 204 (241)
+.+|||||||||.++..+++.+ + .+|+|+|+|++|++.|+++ ..++++|+.+ ++.++++||.|++
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~-~-~~v~gvD~S~~Ml~~a~~~--------~~~~~~d~~~-----lp~~d~sfD~v~~ 116 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF-K-YYVVALDYAENMLKMNLVA--------DDKVVGSFEA-----LPFRDKSFDVVMS 116 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc-C-CEEEEECCCHHHHHHHHhc--------cceEEechhh-----CCCCCCCEEEEEe
Confidence 6799999999999999999987 4 6899999999999998753 1356788875 4556799999988
Q ss_pred eCCCCchhhhhhhcccchHHHHHHHHhccccCC
Q 026219 205 LCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGG 237 (241)
Q Consensus 205 ~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG 237 (241)
.+.-.+..+. ++++++++|+|||.+
T Consensus 117 ~~~l~~~~d~--------~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 117 SFALHASDNI--------EKVIAEFTRVSRKQV 141 (226)
T ss_pred cChhhccCCH--------HHHHHHHHHHhcCce
Confidence 7755444333 489999999999954
No 65
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.47 E-value=7.1e-13 Score=112.50 Aligned_cols=105 Identities=19% Similarity=0.311 Sum_probs=82.3
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCCCcEeEE
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYPGPLMLV 202 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~~~~d~V 202 (241)
++.+|||||||+|.++..+++..+...+++|+|+++.+++.+++++...+. .++.++.+|+.+. ...++.+|+|
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~~D~I 125 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEAL-----PFPDNSFDAV 125 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccC-----CCCCCCccEE
Confidence 357999999999999999999887227899999999999999998876544 4689999999762 2235779988
Q ss_pred EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
+..+...+..+. ..+++++.++|+|||.+++
T Consensus 126 ~~~~~l~~~~~~--------~~~l~~~~~~L~~gG~li~ 156 (239)
T PRK00216 126 TIAFGLRNVPDI--------DKALREMYRVLKPGGRLVI 156 (239)
T ss_pred EEecccccCCCH--------HHHHHHHHHhccCCcEEEE
Confidence 765433222221 4899999999999998864
No 66
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=5.2e-13 Score=117.03 Aligned_cols=113 Identities=17% Similarity=0.234 Sum_probs=89.6
Q ss_pred HHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCC
Q 026219 118 EVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPG 197 (241)
Q Consensus 118 ~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~ 197 (241)
+.+....+.+|||+|||.|.+++.+++.+|. .+++-+|+|..+++.+++|++.++.++..++..|..+. ..+
T Consensus 152 ~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~-~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~-------v~~ 223 (300)
T COG2813 152 ETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQ-AKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEP-------VEG 223 (300)
T ss_pred HhCCccCCCcEEEeCCCccHHHHHHHHhCCC-CeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccc-------ccc
Confidence 4444444569999999999999999999998 89999999999999999999999988877778887541 134
Q ss_pred cEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 198 PLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 198 ~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
+||.|+.|.|-. +.+..-..+.+++++...+.|++||.++|
T Consensus 224 kfd~IisNPPfh---~G~~v~~~~~~~~i~~A~~~L~~gGeL~i 264 (300)
T COG2813 224 KFDLIISNPPFH---AGKAVVHSLAQEIIAAAARHLKPGGELWI 264 (300)
T ss_pred cccEEEeCCCcc---CCcchhHHHHHHHHHHHHHhhccCCEEEE
Confidence 899998886543 12211222345999999999999999875
No 67
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.47 E-value=7.2e-13 Score=111.70 Aligned_cols=100 Identities=18% Similarity=0.232 Sum_probs=80.3
Q ss_pred hcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcE
Q 026219 120 YKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPL 199 (241)
Q Consensus 120 ~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~ 199 (241)
....++.+|||||||+|.++..+++.. .+++++|+++++++.+++++++.++.+++++.+|+.+.+ . ..+.|
T Consensus 74 l~~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----~-~~~~f 145 (212)
T PRK00312 74 LELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGW----P-AYAPF 145 (212)
T ss_pred cCCCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCC----C-cCCCc
Confidence 333456899999999999999888874 369999999999999999999888888999999986521 1 23679
Q ss_pred eEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 200 MLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 200 d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
|.|++....+ .+.+.+.+.|+|||.+++
T Consensus 146 D~I~~~~~~~--------------~~~~~l~~~L~~gG~lv~ 173 (212)
T PRK00312 146 DRILVTAAAP--------------EIPRALLEQLKEGGILVA 173 (212)
T ss_pred CEEEEccCch--------------hhhHHHHHhcCCCcEEEE
Confidence 9988765432 445678899999999875
No 68
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.47 E-value=1.3e-13 Score=115.05 Aligned_cols=105 Identities=22% Similarity=0.237 Sum_probs=81.5
Q ss_pred hHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCC
Q 026219 116 WSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSY 195 (241)
Q Consensus 116 ~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~ 195 (241)
.....+......|+|+|||+|+.+..|++++|+ ..++|||-|++|++.|+++ +.|++|..+|+.++ . +
T Consensus 22 Lla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~-A~i~GiDsS~~Mla~Aa~r-----lp~~~f~~aDl~~w----~--p 89 (257)
T COG4106 22 LLARVPLERPRRVVDLGCGPGNSTELLARRWPD-AVITGIDSSPAMLAKAAQR-----LPDATFEEADLRTW----K--P 89 (257)
T ss_pred HHhhCCccccceeeecCCCCCHHHHHHHHhCCC-CeEeeccCCHHHHHHHHHh-----CCCCceecccHhhc----C--C
Confidence 333333334578999999999999999999999 9999999999999999663 47899999999863 2 3
Q ss_pred CCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 196 PGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 196 ~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
+...|+++.+-...|..+- ..++..+...|.|||.+-
T Consensus 90 ~~~~dllfaNAvlqWlpdH--------~~ll~rL~~~L~Pgg~LA 126 (257)
T COG4106 90 EQPTDLLFANAVLQWLPDH--------PELLPRLVSQLAPGGVLA 126 (257)
T ss_pred CCccchhhhhhhhhhcccc--------HHHHHHHHHhhCCCceEE
Confidence 4566776555433343322 399999999999999875
No 69
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.47 E-value=9.4e-13 Score=110.61 Aligned_cols=103 Identities=21% Similarity=0.319 Sum_probs=81.5
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS 203 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~ 203 (241)
++.+|||+|||+|.++..+++..+...+++|+|+++.+++.++++.. ...+++++.+|+.+. +..++.+|.|+
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~-----~~~~~~~D~i~ 111 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEAL-----PFEDNSFDAVT 111 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcC-----CCCCCcEEEEE
Confidence 46899999999999999999988643589999999999999998765 335789999999762 22356899887
Q ss_pred EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
..+...+..+. ..+++++.++|+|||++++
T Consensus 112 ~~~~~~~~~~~--------~~~l~~~~~~L~~gG~l~~ 141 (223)
T TIGR01934 112 IAFGLRNVTDI--------QKALREMYRVLKPGGRLVI 141 (223)
T ss_pred EeeeeCCcccH--------HHHHHHHHHHcCCCcEEEE
Confidence 66543333222 4899999999999999874
No 70
>PLN03075 nicotianamine synthase; Provisional
Probab=99.46 E-value=9.6e-13 Score=115.96 Aligned_cols=105 Identities=14% Similarity=0.151 Sum_probs=78.1
Q ss_pred CCCcEEEEcCCccHH--HHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHH-hCCC-CEEEEEccccchHHhhccCCCCcE
Q 026219 124 TLPLMVDIGSGSGRF--LIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQE-LALS-NIHFLFANASVSFKQLVSSYPGPL 199 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~--~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~-~~l~-ni~~~~~D~~~~~~~~~~~~~~~~ 199 (241)
...+|+|||||.|.+ +..+++.+|+ +.++|+|+++++++.|++.++. .++. +++|..+|+.+. ....+.|
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~-~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~-----~~~l~~F 196 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPT-TSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDV-----TESLKEY 196 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCC-CEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhc-----ccccCCc
Confidence 468999999998844 3334456788 8999999999999999999965 6774 599999999862 1113678
Q ss_pred eEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 200 MLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 200 d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
|+|++..--.|.+..+ +.+++.+.+.|+|||.+++
T Consensus 197 DlVF~~ALi~~dk~~k-------~~vL~~l~~~LkPGG~Lvl 231 (296)
T PLN03075 197 DVVFLAALVGMDKEEK-------VKVIEHLGKHMAPGALLML 231 (296)
T ss_pred CEEEEecccccccccH-------HHHHHHHHHhcCCCcEEEE
Confidence 9887652111111111 5999999999999999875
No 71
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.46 E-value=7.1e-13 Score=118.12 Aligned_cols=109 Identities=17% Similarity=0.199 Sum_probs=84.8
Q ss_pred CcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCCCcEeEEEE
Q 026219 126 PLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYPGPLMLVSI 204 (241)
Q Consensus 126 ~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~~d~V~~ 204 (241)
.+|||+|||+|.+++.+++.+|+ .+|+|+|+|+.+++.|++|++.+++. +++++++|+.+. + ++.+||+|+.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~-~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~----l--~~~~fDlIvs 207 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPD-AEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA----L--PGRRYDLIVS 207 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh----C--CCCCccEEEE
Confidence 68999999999999999999988 89999999999999999999988874 699999998652 2 2457999887
Q ss_pred eCCCCc-------hhhhhhh----------cccchHHHHHHHHhccccCCEEEc
Q 026219 205 LCPDPH-------FKKKHHK----------RRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 205 ~~~~~~-------~~~~~~~----------~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
+.|--. ...-.++ ...+++.+++.+.+.|+|||.+++
T Consensus 208 NPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~ 261 (307)
T PRK11805 208 NPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVV 261 (307)
T ss_pred CCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEE
Confidence 743210 0000001 112457899999999999999875
No 72
>PRK14967 putative methyltransferase; Provisional
Probab=99.45 E-value=1.1e-12 Score=111.57 Aligned_cols=109 Identities=19% Similarity=0.224 Sum_probs=81.4
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS 203 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~ 203 (241)
++.+|||+|||+|.++..+++.. . .+++|+|+|+.+++.++++++.++. ++.++.+|+.+. + .+..||.|+
T Consensus 36 ~~~~vLDlGcG~G~~~~~la~~~-~-~~v~~vD~s~~~l~~a~~n~~~~~~-~~~~~~~d~~~~----~--~~~~fD~Vi 106 (223)
T PRK14967 36 PGRRVLDLCTGSGALAVAAAAAG-A-GSVTAVDISRRAVRSARLNALLAGV-DVDVRRGDWARA----V--EFRPFDVVV 106 (223)
T ss_pred CCCeEEEecCCHHHHHHHHHHcC-C-CeEEEEECCHHHHHHHHHHHHHhCC-eeEEEECchhhh----c--cCCCeeEEE
Confidence 46799999999999999998863 3 4899999999999999999988776 688999998652 2 357899998
Q ss_pred EeCCCC-chhh------------hhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 204 ILCPDP-HFKK------------KHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 204 ~~~~~~-~~~~------------~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
.+.|-. .... .........+.+++++.++|||||++++
T Consensus 107 ~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~ 157 (223)
T PRK14967 107 SNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLL 157 (223)
T ss_pred ECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 874321 0000 0001112346789999999999999874
No 73
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.45 E-value=8.5e-13 Score=116.32 Aligned_cols=109 Identities=18% Similarity=0.260 Sum_probs=84.7
Q ss_pred CcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCCCcEeEEEE
Q 026219 126 PLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYPGPLMLVSI 204 (241)
Q Consensus 126 ~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~~d~V~~ 204 (241)
.+|||+|||+|.+++.++..+++ .+|+|+|+|+++++.|++|++.+++. +++++.+|+.+. + .+..||+|+.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~-~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~----~--~~~~fDlIvs 188 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPN-AEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP----L--AGQKIDIIVS 188 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc----C--cCCCccEEEE
Confidence 68999999999999999999887 79999999999999999999988885 499999998652 1 2347898887
Q ss_pred eCCCCchhh-------hhhh----------cccchHHHHHHHHhccccCCEEEc
Q 026219 205 LCPDPHFKK-------KHHK----------RRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 205 ~~~~~~~~~-------~~~~----------~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
+.|-..... ..++ ....++.+++.+.++|+|||.+++
T Consensus 189 NPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~ 242 (284)
T TIGR00536 189 NPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVC 242 (284)
T ss_pred CCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 643210000 0001 112567899999999999999875
No 74
>PRK14968 putative methyltransferase; Provisional
Probab=99.45 E-value=1.5e-12 Score=106.85 Aligned_cols=109 Identities=18% Similarity=0.273 Sum_probs=81.3
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCC--EEEEEccccchHHhhccCCCCcEeE
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN--IHFLFANASVSFKQLVSSYPGPLML 201 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~n--i~~~~~D~~~~~~~~~~~~~~~~d~ 201 (241)
++.+|||+|||+|.++..++++ + .+++|+|+|+++++.++++++.+++.+ +.++++|..+. + .+..+|.
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~--~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~----~--~~~~~d~ 93 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKN--G-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP----F--RGDKFDV 93 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhh--c-ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc----c--cccCceE
Confidence 4678999999999999999998 4 689999999999999999998887755 89999998652 1 2347998
Q ss_pred EEEeCCCCc-hhhhh------------hhcccchHHHHHHHHhccccCCEEEc
Q 026219 202 VSILCPDPH-FKKKH------------HKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 202 V~~~~~~~~-~~~~~------------~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
|+.+.|... ..... ...+.....+++++.++|||||.+++
T Consensus 94 vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~ 146 (188)
T PRK14968 94 ILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILL 146 (188)
T ss_pred EEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEE
Confidence 887644210 00000 00112346789999999999998864
No 75
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.44 E-value=1e-12 Score=117.26 Aligned_cols=104 Identities=13% Similarity=0.049 Sum_probs=75.2
Q ss_pred CCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhC-CCCEEEEEccccchHHhhccCCCCcEe
Q 026219 122 NPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELA-LSNIHFLFANASVSFKQLVSSYPGPLM 200 (241)
Q Consensus 122 ~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~-l~ni~~~~~D~~~~~~~~~~~~~~~~d 200 (241)
..++.+|||||||+|.++..++..++. .|+|||+|+.|+..++...+..+ ..++.++.+|+.+ ++ +...||
T Consensus 119 ~~~g~~VLDvGCG~G~~~~~~~~~g~~--~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~-----lp-~~~~FD 190 (314)
T TIGR00452 119 PLKGRTILDVGCGSGYHMWRMLGHGAK--SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQ-----LH-ELYAFD 190 (314)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHH-----CC-CCCCcC
Confidence 345789999999999999999887654 79999999999876544322222 2468888888765 22 135789
Q ss_pred EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
.|+......|..+. ..+|++++++|||||.|++
T Consensus 191 ~V~s~gvL~H~~dp--------~~~L~el~r~LkpGG~Lvl 223 (314)
T TIGR00452 191 TVFSMGVLYHRKSP--------LEHLKQLKHQLVIKGELVL 223 (314)
T ss_pred EEEEcchhhccCCH--------HHHHHHHHHhcCCCCEEEE
Confidence 88654332222222 4899999999999999975
No 76
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.44 E-value=1.4e-12 Score=116.81 Aligned_cols=99 Identities=18% Similarity=0.258 Sum_probs=79.7
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS 203 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~ 203 (241)
++.+|||||||+|.++..+++..+..+.|+|+|+++++++.|++++++.+.+|+.++.+|+.+..+ ..+.+|.|+
T Consensus 80 ~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~-----~~~~fD~Ii 154 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVP-----EFAPYDVIF 154 (322)
T ss_pred CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhccc-----ccCCccEEE
Confidence 468999999999999999999875325799999999999999999998888899999999865211 135699988
Q ss_pred EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
+....+ .....+.+.|+|||++++
T Consensus 155 ~~~g~~--------------~ip~~~~~~LkpgG~Lvv 178 (322)
T PRK13943 155 VTVGVD--------------EVPETWFTQLKEGGRVIV 178 (322)
T ss_pred ECCchH--------------HhHHHHHHhcCCCCEEEE
Confidence 765433 334457789999999764
No 77
>PRK04457 spermidine synthase; Provisional
Probab=99.44 E-value=8.8e-13 Score=115.04 Aligned_cols=109 Identities=14% Similarity=0.125 Sum_probs=85.1
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCCCcEeEE
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYPGPLMLV 202 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~~~~d~V 202 (241)
+..+|||||||+|.++..+++.+|+ .+++++|+++++++.|++++...+. ++++++.+|+.+.+.. .+..+|.|
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~-~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~----~~~~yD~I 140 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPD-TRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAV----HRHSTDVI 140 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCC-CeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHh----CCCCCCEE
Confidence 4578999999999999999999988 8999999999999999998765443 5799999999875432 24679988
Q ss_pred EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
++...+.... ........+++++.+.|+|||.+++
T Consensus 141 ~~D~~~~~~~----~~~l~t~efl~~~~~~L~pgGvlvi 175 (262)
T PRK04457 141 LVDGFDGEGI----IDALCTQPFFDDCRNALSSDGIFVV 175 (262)
T ss_pred EEeCCCCCCC----ccccCcHHHHHHHHHhcCCCcEEEE
Confidence 8764221100 0112346999999999999999875
No 78
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.44 E-value=1.1e-12 Score=110.43 Aligned_cols=106 Identities=21% Similarity=0.293 Sum_probs=88.6
Q ss_pred CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCC-CCcEeEE
Q 026219 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSY-PGPLMLV 202 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~-~~~~d~V 202 (241)
..+|||||||+|..++.+++..|++++|+.+|++++..+.|++++++.|+. +++++.+|+.+.++.+.... .+.||.|
T Consensus 46 ~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~V 125 (205)
T PF01596_consen 46 PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFV 125 (205)
T ss_dssp -SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEE
T ss_pred CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEE
Confidence 478999999999999999998875589999999999999999999999984 79999999998877765432 4689999
Q ss_pred EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
++...-. . +..+++.+.++|+|||.|++
T Consensus 126 FiDa~K~----~-------y~~y~~~~~~ll~~ggvii~ 153 (205)
T PF01596_consen 126 FIDADKR----N-------YLEYFEKALPLLRPGGVIIA 153 (205)
T ss_dssp EEESTGG----G-------HHHHHHHHHHHEEEEEEEEE
T ss_pred EEccccc----c-------hhhHHHHHhhhccCCeEEEE
Confidence 9875321 1 25889999999999999874
No 79
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.43 E-value=2e-12 Score=114.93 Aligned_cols=102 Identities=15% Similarity=0.168 Sum_probs=79.6
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCCCcEeEE
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYPGPLMLV 202 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~~d~V 202 (241)
+..+|||||||+|.++..+++++|+ .+++++|+ +.+++.+++++++.++. +++++.+|+.+. + ++. .|.|
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~p~-~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~-----~-~~~-~D~v 219 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHFPE-LDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE-----S-YPE-ADAV 219 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHCCC-CEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCC-----C-CCC-CCEE
Confidence 4579999999999999999999998 89999998 78999999999988874 699999998641 1 122 4766
Q ss_pred EEeCCCC-chhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 203 SILCPDP-HFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 203 ~~~~~~~-~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
++..... |.++. ...+++++++.|+|||+++|
T Consensus 220 ~~~~~lh~~~~~~-------~~~il~~~~~~L~pgG~l~i 252 (306)
T TIGR02716 220 LFCRILYSANEQL-------STIMCKKAFDAMRSGGRLLI 252 (306)
T ss_pred EeEhhhhcCChHH-------HHHHHHHHHHhcCCCCEEEE
Confidence 5443211 22111 14799999999999999975
No 80
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.43 E-value=1.7e-12 Score=114.64 Aligned_cols=98 Identities=17% Similarity=0.189 Sum_probs=77.4
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCCCcEeEE
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYPGPLMLV 202 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~~d~V 202 (241)
++.+|||+|||+|.+++.+++.. . .+|+|+|+|+.+++.|+++++.+++. ++.+...|... ..++.||.|
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~g-~-~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~-------~~~~~fDlV 229 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKLG-A-AKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ-------PIEGKADVI 229 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHcC-C-CeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc-------ccCCCceEE
Confidence 46899999999999999888753 3 48999999999999999999988775 46666665322 125689999
Q ss_pred EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
+.+..... ...+++++.++|||||.+++
T Consensus 230 van~~~~~-----------l~~ll~~~~~~LkpgG~li~ 257 (288)
T TIGR00406 230 VANILAEV-----------IKELYPQFSRLVKPGGWLIL 257 (288)
T ss_pred EEecCHHH-----------HHHHHHHHHHHcCCCcEEEE
Confidence 87754221 14889999999999999875
No 81
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=8e-13 Score=110.51 Aligned_cols=107 Identities=20% Similarity=0.324 Sum_probs=86.6
Q ss_pred hhhhHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhc
Q 026219 113 IPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLV 192 (241)
Q Consensus 113 ~~~~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~ 192 (241)
...+.+.+...++.+|||||||+|..+..|++... +|+.+|+.++..+.|++|++..|+.|+.++++|....++
T Consensus 61 vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~---~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~--- 134 (209)
T COG2518 61 VARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG---RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWP--- 134 (209)
T ss_pred HHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC---eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCC---
Confidence 34666666666689999999999999999999853 699999999999999999999999999999999986432
Q ss_pred cCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 193 SSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 193 ~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
..+.||.|++.-.-+. +=+.+.+.|||||++++
T Consensus 135 --~~aPyD~I~Vtaaa~~--------------vP~~Ll~QL~~gGrlv~ 167 (209)
T COG2518 135 --EEAPYDRIIVTAAAPE--------------VPEALLDQLKPGGRLVI 167 (209)
T ss_pred --CCCCcCEEEEeeccCC--------------CCHHHHHhcccCCEEEE
Confidence 1378999887664431 12236788999999875
No 82
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.43 E-value=1e-12 Score=118.10 Aligned_cols=110 Identities=14% Similarity=0.143 Sum_probs=84.1
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS 203 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~ 203 (241)
++.+|||+|||+|.+++.++.. + ..++|+|+++.|++.+++|++..++.++.++++|+.+ .+..++.+|.|+
T Consensus 182 ~g~~vLDp~cGtG~~lieaa~~--~-~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~-----l~~~~~~~D~Iv 253 (329)
T TIGR01177 182 EGDRVLDPFCGTGGFLIEAGLM--G-AKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATK-----LPLSSESVDAIA 253 (329)
T ss_pred CcCEEEECCCCCCHHHHHHHHh--C-CeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhc-----CCcccCCCCEEE
Confidence 4678999999999999887765 4 5799999999999999999999998888999999986 233357899998
Q ss_pred EeCCCCchh-hhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 204 ILCPDPHFK-KKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 204 ~~~~~~~~~-~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
.+.|-.... ........++..+++++.++|||||++++
T Consensus 254 ~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~ 292 (329)
T TIGR01177 254 TDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVY 292 (329)
T ss_pred ECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEE
Confidence 875421000 00000112357999999999999998864
No 83
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.42 E-value=1.2e-12 Score=108.85 Aligned_cols=102 Identities=17% Similarity=0.270 Sum_probs=76.3
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS 203 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~ 203 (241)
+..++||+|||.|..++.||++ + ..|+++|+|+..++.+++.+++.+++ ++....|+.+ .. ++..+|.|+
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~--G-~~VtAvD~s~~al~~l~~~a~~~~l~-i~~~~~Dl~~-----~~-~~~~yD~I~ 99 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQ--G-FDVTAVDISPVALEKLQRLAEEEGLD-IRTRVADLND-----FD-FPEEYDFIV 99 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHT--T--EEEEEESSHHHHHHHHHHHHHTT-T-EEEEE-BGCC-----BS--TTTEEEEE
T ss_pred CCCcEEEcCCCCcHHHHHHHHC--C-CeEEEEECCHHHHHHHHHHHhhcCce-eEEEEecchh-----cc-ccCCcCEEE
Confidence 4689999999999999999998 5 67999999999999999988888875 9999999976 22 357799876
Q ss_pred EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
......+. .+...+++++.+...++|||.+++
T Consensus 100 st~v~~fL------~~~~~~~i~~~m~~~~~pGG~~li 131 (192)
T PF03848_consen 100 STVVFMFL------QRELRPQIIENMKAATKPGGYNLI 131 (192)
T ss_dssp EESSGGGS-------GGGHHHHHHHHHHTEEEEEEEEE
T ss_pred EEEEeccC------CHHHHHHHHHHHHhhcCCcEEEEE
Confidence 43221111 011235899999999999998764
No 84
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.42 E-value=2.3e-12 Score=112.27 Aligned_cols=111 Identities=20% Similarity=0.261 Sum_probs=83.6
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS 203 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~ 203 (241)
++.+|||+|||+|..+..+++..+. ..++|+|+|+.+++.|+++++.....+++++.+|+.+. . .+++||.|+
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~~-~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~----~--~~~~fD~Iv 180 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERPD-AEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEP----L--PGGRFDLIV 180 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCc----C--CCCceeEEE
Confidence 4678999999999999999999887 89999999999999999998733335799999998652 1 247899988
Q ss_pred EeCCCCchh--------hhhh----------hcccchHHHHHHHHhccccCCEEEc
Q 026219 204 ILCPDPHFK--------KKHH----------KRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 204 ~~~~~~~~~--------~~~~----------~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
.+.|-.... ...+ .....+..+++++.++|+|||.++|
T Consensus 181 ~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~ 236 (275)
T PRK09328 181 SNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLL 236 (275)
T ss_pred ECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEE
Confidence 765421000 0000 0112346889999999999999875
No 85
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.42 E-value=2.8e-13 Score=115.17 Aligned_cols=109 Identities=13% Similarity=0.097 Sum_probs=73.2
Q ss_pred hhHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHH------------hCCCCEEEEEc
Q 026219 115 DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQE------------LALSNIHFLFA 182 (241)
Q Consensus 115 ~~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~------------~~l~ni~~~~~ 182 (241)
++......+++.+|||+|||.|..+..||++ + .+|+|||+|+.+++.+.+.... ....+++++++
T Consensus 28 ~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~--G-~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~ 104 (218)
T PRK13255 28 KYWPALALPAGSRVLVPLCGKSLDMLWLAEQ--G-HEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCG 104 (218)
T ss_pred HHHHhhCCCCCCeEEEeCCCChHhHHHHHhC--C-CeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEEC
Confidence 4443332234689999999999999999986 5 6899999999999987432100 01136889999
Q ss_pred cccchHHhhccCCCCcEeEEE----EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 183 NASVSFKQLVSSYPGPLMLVS----ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 183 D~~~~~~~~~~~~~~~~d~V~----~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
|+.+..... .+.||.|+ ++...+ ..+ ..+++.+.++|+|||+++
T Consensus 105 D~~~l~~~~----~~~fd~v~D~~~~~~l~~--~~R--------~~~~~~l~~lL~pgG~~~ 152 (218)
T PRK13255 105 DFFALTAAD----LADVDAVYDRAALIALPE--EMR--------ERYVQQLAALLPAGCRGL 152 (218)
T ss_pred cccCCCccc----CCCeeEEEehHhHhhCCH--HHH--------HHHHHHHHHHcCCCCeEE
Confidence 998632111 13456553 222222 112 499999999999999744
No 86
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.42 E-value=2e-12 Score=118.69 Aligned_cols=111 Identities=18% Similarity=0.176 Sum_probs=84.6
Q ss_pred CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEE
Q 026219 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSI 204 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~ 204 (241)
+.+|||+|||+|.+++.+++..++ .+++|+|+|+++++.|++|++.++. +++++++|+.+.. .+ .++.||.|+.
T Consensus 252 ~~rVLDLGcGSG~IaiaLA~~~p~-a~VtAVDiS~~ALe~AreNa~~~g~-rV~fi~gDl~e~~---l~-~~~~FDLIVS 325 (423)
T PRK14966 252 NGRVWDLGTGSGAVAVTVALERPD-AFVRASDISPPALETARKNAADLGA-RVEFAHGSWFDTD---MP-SEGKWDIIVS 325 (423)
T ss_pred CCEEEEEeChhhHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEcchhccc---cc-cCCCccEEEE
Confidence 568999999999999999998888 8999999999999999999988775 7999999986521 11 1357999988
Q ss_pred eCCC-Cchhhh----------------hhhcccchHHHHHHHHhccccCCEEEc
Q 026219 205 LCPD-PHFKKK----------------HHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 205 ~~~~-~~~~~~----------------~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
+.|- +..+.. ......+++.+++.+.+.|+|||.+++
T Consensus 326 NPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lil 379 (423)
T PRK14966 326 NPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLL 379 (423)
T ss_pred CCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEE
Confidence 7642 100000 011123567899999999999999864
No 87
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.42 E-value=1.7e-12 Score=113.28 Aligned_cols=112 Identities=18% Similarity=0.175 Sum_probs=84.8
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS 203 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~ 203 (241)
++.+|||+|||+|..+..+++...+.+.|+++|+++.+++.+++++++.++.|+.++..|+... ....+.||.|+
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~-----~~~~~~fD~Vl 145 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVF-----GAAVPKFDAIL 145 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHh-----hhhccCCCEEE
Confidence 4689999999999999999998754368999999999999999999999988899999998652 11235689888
Q ss_pred EeCCCC----chhhhhhh-----c-----ccchHHHHHHHHhccccCCEEE
Q 026219 204 ILCPDP----HFKKKHHK-----R-----RVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 204 ~~~~~~----~~~~~~~~-----~-----r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
+.-|-. +.+++..+ + ...+..+|+.+.++|||||+++
T Consensus 146 ~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lv 196 (264)
T TIGR00446 146 LDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLV 196 (264)
T ss_pred EcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence 754321 00000000 0 1145679999999999999886
No 88
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.41 E-value=1.3e-12 Score=110.25 Aligned_cols=106 Identities=21% Similarity=0.350 Sum_probs=80.4
Q ss_pred HHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCC
Q 026219 117 SEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYP 196 (241)
Q Consensus 117 ~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~ 196 (241)
.+.+.-.++.+|||||||+|.++..+++.....+.|++||+.+.+++.|+++++..+..|+.++++|....++. .
T Consensus 65 l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~-----~ 139 (209)
T PF01135_consen 65 LEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPE-----E 139 (209)
T ss_dssp HHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGG-----G
T ss_pred HHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcccc-----C
Confidence 33344445799999999999999999998644368999999999999999999999999999999999764321 3
Q ss_pred CcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 197 GPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 197 ~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
+.||.|++...-+ .+-+.+.+.|++||++++
T Consensus 140 apfD~I~v~~a~~--------------~ip~~l~~qL~~gGrLV~ 170 (209)
T PF01135_consen 140 APFDRIIVTAAVP--------------EIPEALLEQLKPGGRLVA 170 (209)
T ss_dssp -SEEEEEESSBBS--------------S--HHHHHTEEEEEEEEE
T ss_pred CCcCEEEEeeccc--------------hHHHHHHHhcCCCcEEEE
Confidence 6799998876543 223447888999999874
No 89
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.41 E-value=2.5e-12 Score=111.47 Aligned_cols=110 Identities=17% Similarity=0.164 Sum_probs=82.3
Q ss_pred CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEE
Q 026219 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSI 204 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~ 204 (241)
..+|||+|||+|.+++.+++..++ .+++|+|+|+.+++.|++|++.++ ++++++|+.+.++.. ..+.||.|+.
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~-~~v~~vDis~~al~~A~~N~~~~~---~~~~~~D~~~~l~~~---~~~~fDlVv~ 159 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDG-IELHAADIDPAAVRCARRNLADAG---GTVHEGDLYDALPTA---LRGRVDILAA 159 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcC---CEEEEeechhhcchh---cCCCEeEEEE
Confidence 358999999999999999998887 789999999999999999998765 478999987643221 1357999988
Q ss_pred eCCCC-c-------hhhhhhh----------cccchHHHHHHHHhccccCCEEEc
Q 026219 205 LCPDP-H-------FKKKHHK----------RRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 205 ~~~~~-~-------~~~~~~~----------~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
+.|-. . +..+.++ ...+++.+++.+.++|+|||.+++
T Consensus 160 NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l 214 (251)
T TIGR03704 160 NAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLV 214 (251)
T ss_pred CCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 76531 0 0000011 122457899999999999999875
No 90
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=2.2e-12 Score=113.51 Aligned_cols=107 Identities=21% Similarity=0.298 Sum_probs=84.7
Q ss_pred cEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEEeC
Q 026219 127 LMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSILC 206 (241)
Q Consensus 127 ~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~~ 206 (241)
+|||||||||..++.++...+. ++|+|+|+|+++++.|++|++.+++.++.++.+|..+ ...+.||+|+.|.
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~-~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~-------~~~~~fDlIVsNP 184 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPD-AEVIAVDISPDALALARENAERNGLVRVLVVQSDLFE-------PLRGKFDLIVSNP 184 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcC-CeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeeccc-------ccCCceeEEEeCC
Confidence 7999999999999999999998 8999999999999999999999998677777776643 1245899988876
Q ss_pred CC-Cch--hhh--------------hhhcccchHHHHHHHHhccccCCEEEc
Q 026219 207 PD-PHF--KKK--------------HHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 207 ~~-~~~--~~~--------------~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
|- |.. ... ......++..+++++.+.|+|||.+++
T Consensus 185 PYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~l 236 (280)
T COG2890 185 PYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLIL 236 (280)
T ss_pred CCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEE
Confidence 52 110 000 012234788999999999999998875
No 91
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.40 E-value=3.3e-12 Score=118.89 Aligned_cols=117 Identities=19% Similarity=0.259 Sum_probs=87.1
Q ss_pred CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219 123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV 202 (241)
Q Consensus 123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V 202 (241)
.++.+|||+|||+|..+..+++...+.++|+++|+++.+++.+++++++.|+.|++++.+|+.+.... ....++.||.|
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~-~~~~~~~fD~V 329 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLEL-KPQWRGYFDRI 329 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccc-cccccccCCEE
Confidence 35789999999999999999998643368999999999999999999999998999999999763111 11224679998
Q ss_pred EEeCCCC----chhhhhhhcc----------cchHHHHHHHHhccccCCEEE
Q 026219 203 SILCPDP----HFKKKHHKRR----------VVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 203 ~~~~~~~----~~~~~~~~~r----------~~~~~ll~~l~r~LkpGG~l~ 240 (241)
++.-|-. +.+.+..+++ ..+..+++++.++|||||+|+
T Consensus 330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lv 381 (434)
T PRK14901 330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLV 381 (434)
T ss_pred EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence 8764410 0000100111 135799999999999999886
No 92
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.40 E-value=1.5e-12 Score=103.71 Aligned_cols=94 Identities=23% Similarity=0.324 Sum_probs=70.9
Q ss_pred CCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeE
Q 026219 122 NPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLML 201 (241)
Q Consensus 122 ~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~ 201 (241)
.+++.+|||||||+|.++..+++. + .+++|+|+++.+++. .++.....+..+ ...+++.||.
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~--~-~~~~g~D~~~~~~~~----------~~~~~~~~~~~~-----~~~~~~~fD~ 81 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR--G-FEVTGVDISPQMIEK----------RNVVFDNFDAQD-----PPFPDGSFDL 81 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT--T-SEEEEEESSHHHHHH----------TTSEEEEEECHT-----HHCHSSSEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh--C-CEEEEEECCHHHHhh----------hhhhhhhhhhhh-----hhccccchhh
Confidence 346789999999999999999776 3 479999999999988 233333333322 1123689999
Q ss_pred EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
|+......|.++. ..+++++.++|||||.++|
T Consensus 82 i~~~~~l~~~~d~--------~~~l~~l~~~LkpgG~l~~ 113 (161)
T PF13489_consen 82 IICNDVLEHLPDP--------EEFLKELSRLLKPGGYLVI 113 (161)
T ss_dssp EEEESSGGGSSHH--------HHHHHHHHHCEEEEEEEEE
T ss_pred HhhHHHHhhcccH--------HHHHHHHHHhcCCCCEEEE
Confidence 9887765555443 4999999999999999985
No 93
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.40 E-value=1.6e-12 Score=112.56 Aligned_cols=92 Identities=18% Similarity=0.198 Sum_probs=69.9
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCCCcEeEE
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYPGPLMLV 202 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~~d~V 202 (241)
++.+|||+|||+|.+++.+++... ..|+|+|+|+.+++.|+++++.+++. ++.+..+ +.+||.|
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~--~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~-------------~~~fD~V 183 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGA--KKVLAVDIDPQAVEAARENAELNGVELNVYLPQG-------------DLKADVI 183 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCCCceEEEccC-------------CCCcCEE
Confidence 478999999999999988777543 36999999999999999999887762 2332221 1267888
Q ss_pred EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
+.+.... ....+++++.++|||||.+++
T Consensus 184 vani~~~-----------~~~~l~~~~~~~LkpgG~lil 211 (250)
T PRK00517 184 VANILAN-----------PLLELAPDLARLLKPGGRLIL 211 (250)
T ss_pred EEcCcHH-----------HHHHHHHHHHHhcCCCcEEEE
Confidence 7664321 114889999999999999975
No 94
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.39 E-value=3.3e-13 Score=115.54 Aligned_cols=98 Identities=17% Similarity=0.251 Sum_probs=73.3
Q ss_pred CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC------CEEEEEccccchHHhhccCCCCc
Q 026219 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS------NIHFLFANASVSFKQLVSSYPGP 198 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~------ni~~~~~D~~~~~~~~~~~~~~~ 198 (241)
+.+|||+|||+|.++.+||+.. ..|+|||++++|++.|+++....... ++++.+.|++. . -+.
T Consensus 90 g~~ilDvGCGgGLLSepLArlg---a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~-----~---~~~ 158 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG---AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEG-----L---TGK 158 (282)
T ss_pred CceEEEeccCccccchhhHhhC---CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhh-----c---ccc
Confidence 4679999999999999999984 56999999999999999984433221 25566666654 1 245
Q ss_pred EeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 199 LMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 199 ~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
||.|+..-.-.|.++. +.+++.+.++|||||.+||
T Consensus 159 fDaVvcsevleHV~dp--------~~~l~~l~~~lkP~G~lfi 193 (282)
T KOG1270|consen 159 FDAVVCSEVLEHVKDP--------QEFLNCLSALLKPNGRLFI 193 (282)
T ss_pred cceeeeHHHHHHHhCH--------HHHHHHHHHHhCCCCceEe
Confidence 8888654322222222 4999999999999999986
No 95
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=5.4e-12 Score=107.90 Aligned_cols=100 Identities=25% Similarity=0.389 Sum_probs=87.4
Q ss_pred CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCC-EEEEEccccchHHhhccCCCCcEeE
Q 026219 123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IHFLFANASVSFKQLVSSYPGPLML 201 (241)
Q Consensus 123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~n-i~~~~~D~~~~~~~~~~~~~~~~d~ 201 (241)
.++.+|+|.|.|+|.++..|++.....++|+.+|+.++..+.|++|+++.++.| +.+..+|+.+.. .+..||.
T Consensus 93 ~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~------~~~~vDa 166 (256)
T COG2519 93 SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGI------DEEDVDA 166 (256)
T ss_pred CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccc------cccccCE
Confidence 457999999999999999999855333899999999999999999999988866 999999998731 2348999
Q ss_pred EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
|++..|+|| .+++.+.+.|||||.+.+
T Consensus 167 v~LDmp~PW-------------~~le~~~~~Lkpgg~~~~ 193 (256)
T COG2519 167 VFLDLPDPW-------------NVLEHVSDALKPGGVVVV 193 (256)
T ss_pred EEEcCCChH-------------HHHHHHHHHhCCCcEEEE
Confidence 999999997 899999999999998864
No 96
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.39 E-value=6.3e-12 Score=90.93 Aligned_cols=101 Identities=20% Similarity=0.264 Sum_probs=78.5
Q ss_pred cEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEEeC
Q 026219 127 LMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSILC 206 (241)
Q Consensus 127 ~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~~ 206 (241)
+|+|+|||+|..+..+++ .+. .+++++|+++++++.+++.....+..+++++.+|+.+... .....+|.|+...
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~d~i~~~~ 74 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPG-ARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP----EADESFDVIISDP 74 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCC-CEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcc----ccCCceEEEEEcc
Confidence 489999999999999988 445 6899999999999999865444455679999999976321 1346799888776
Q ss_pred CCCc-hhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 207 PDPH-FKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 207 ~~~~-~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
+..+ .. ....+++.+.+.|+|||.+++
T Consensus 75 ~~~~~~~--------~~~~~l~~~~~~l~~~g~~~~ 102 (107)
T cd02440 75 PLHHLVE--------DLARFLEEARRLLKPGGVLVL 102 (107)
T ss_pred ceeehhh--------HHHHHHHHHHHHcCCCCEEEE
Confidence 5443 22 225999999999999999875
No 97
>PRK00811 spermidine synthase; Provisional
Probab=99.38 E-value=4e-12 Score=112.08 Aligned_cols=110 Identities=15% Similarity=0.183 Sum_probs=86.3
Q ss_pred CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhC-----CCCEEEEEccccchHHhhccCCCC
Q 026219 123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELA-----LSNIHFLFANASVSFKQLVSSYPG 197 (241)
Q Consensus 123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~-----l~ni~~~~~D~~~~~~~~~~~~~~ 197 (241)
++..+|||||||+|..+..+++..+. .+|++||+++++++.|++++...+ -++++++.+|+.+.+.. .++
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~-~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~----~~~ 149 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSV-EKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE----TEN 149 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCC-CEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh----CCC
Confidence 34678999999999999999886444 689999999999999999876431 25799999999875432 357
Q ss_pred cEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 198 PLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 198 ~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
.+|+|++...+|+.... ....+.+++.+.+.|+|||.+++
T Consensus 150 ~yDvIi~D~~dp~~~~~----~l~t~ef~~~~~~~L~~gGvlv~ 189 (283)
T PRK00811 150 SFDVIIVDSTDPVGPAE----GLFTKEFYENCKRALKEDGIFVA 189 (283)
T ss_pred cccEEEECCCCCCCchh----hhhHHHHHHHHHHhcCCCcEEEE
Confidence 89999988766643211 23456899999999999999864
No 98
>PLN02476 O-methyltransferase
Probab=99.38 E-value=5.7e-12 Score=110.37 Aligned_cols=106 Identities=13% Similarity=0.172 Sum_probs=88.0
Q ss_pred CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccC-CCCcEeEE
Q 026219 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSS-YPGPLMLV 202 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~-~~~~~d~V 202 (241)
..+|||||+|+|..++.+++..+..+.++++|++++..+.|++++++.|+. +++++.+|+.+.++.+... .++.||.|
T Consensus 119 ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~V 198 (278)
T PLN02476 119 AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFA 198 (278)
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEE
Confidence 578999999999999999997764478999999999999999999999985 7999999999877664322 23679988
Q ss_pred EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
++..... . +..+++.+.++|+|||.|++
T Consensus 199 FIDa~K~----~-------Y~~y~e~~l~lL~~GGvIV~ 226 (278)
T PLN02476 199 FVDADKR----M-------YQDYFELLLQLVRVGGVIVM 226 (278)
T ss_pred EECCCHH----H-------HHHHHHHHHHhcCCCcEEEE
Confidence 8764321 1 25899999999999999874
No 99
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.38 E-value=1.8e-12 Score=107.54 Aligned_cols=100 Identities=17% Similarity=0.223 Sum_probs=77.6
Q ss_pred CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEE-EEEccccchHHhhccCCCCcEeEEE
Q 026219 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIH-FLFANASVSFKQLVSSYPGPLMLVS 203 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~-~~~~D~~~~~~~~~~~~~~~~d~V~ 203 (241)
...|||||||||.....+-- -|. ..|+++|.+++|-+++.+.++++...++. |+++|.++. + ...++++|.|+
T Consensus 77 K~~vLEvgcGtG~Nfkfy~~-~p~-~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l-~---~l~d~s~DtVV 150 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYPW-KPI-NSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENL-P---QLADGSYDTVV 150 (252)
T ss_pred ccceEEecccCCCCcccccC-CCC-ceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcC-c---ccccCCeeeEE
Confidence 35689999999988766322 245 78999999999999999999988766776 999999762 2 23579999885
Q ss_pred EeC---CCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 204 ILC---PDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 204 ~~~---~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
..+ +...+ .+.|+++.|+|||||+++|
T Consensus 151 ~TlvLCSve~~-----------~k~L~e~~rlLRpgG~iif 180 (252)
T KOG4300|consen 151 CTLVLCSVEDP-----------VKQLNEVRRLLRPGGRIIF 180 (252)
T ss_pred EEEEEeccCCH-----------HHHHHHHHHhcCCCcEEEE
Confidence 433 22211 4999999999999999986
No 100
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.37 E-value=8e-12 Score=111.04 Aligned_cols=110 Identities=17% Similarity=0.142 Sum_probs=74.6
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCC-CCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCC-CcEe
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYP-GPLM 200 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p-~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~-~~~d 200 (241)
++.+|||+|||+|..+..|++..+ + .+++|+|+|++|++.++++++.... -++.++++|+.+.++.. .... ....
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~-~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~-~~~~~~~~~ 140 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQP-ARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALP-PEPAAGRRL 140 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccC-CeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhh-cccccCCeE
Confidence 357899999999999999999875 4 6899999999999999998876431 24778899997633221 1111 1112
Q ss_pred EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
.++......++.. .-...+|+++++.|+|||.++|
T Consensus 141 ~~~~gs~~~~~~~------~e~~~~L~~i~~~L~pgG~~li 175 (301)
T TIGR03438 141 GFFPGSTIGNFTP------EEAVAFLRRIRQLLGPGGGLLI 175 (301)
T ss_pred EEEecccccCCCH------HHHHHHHHHHHHhcCCCCEEEE
Confidence 2221111111110 0114899999999999999875
No 101
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.37 E-value=4.7e-12 Score=119.93 Aligned_cols=110 Identities=15% Similarity=0.216 Sum_probs=84.7
Q ss_pred CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCCCcEeEEE
Q 026219 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYPGPLMLVS 203 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~~d~V~ 203 (241)
..+|||+|||+|.+++.++..+|+ .+|+|+|+|+.+++.|++|++.+++. +++++.+|+.+. . .+..||.|+
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~-~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~----~--~~~~fDlIv 211 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPN-ANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN----I--EKQKFDFIV 211 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCC-CeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh----C--cCCCccEEE
Confidence 358999999999999999998888 89999999999999999999888874 699999998642 1 245799988
Q ss_pred EeCCCCchhh--------hhh----------hcccchHHHHHHHHhccccCCEEEc
Q 026219 204 ILCPDPHFKK--------KHH----------KRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 204 ~~~~~~~~~~--------~~~----------~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
.+.|--.... ..+ ....++..+++.+.++|+|||.+++
T Consensus 212 sNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~l 267 (506)
T PRK01544 212 SNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIIL 267 (506)
T ss_pred ECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEE
Confidence 7654210000 000 1223567889999999999999875
No 102
>PTZ00146 fibrillarin; Provisional
Probab=99.37 E-value=7e-12 Score=110.21 Aligned_cols=104 Identities=13% Similarity=0.105 Sum_probs=77.1
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS 203 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~ 203 (241)
++.+|||+|||+|.++..+++.......|+++|++++|.+...+.++.. +|+.++.+|+..... ...+...+|.|+
T Consensus 132 pG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--~NI~~I~~Da~~p~~--y~~~~~~vDvV~ 207 (293)
T PTZ00146 132 PGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--PNIVPIIEDARYPQK--YRMLVPMVDVIF 207 (293)
T ss_pred CCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCCEEEECCccChhh--hhcccCCCCEEE
Confidence 4679999999999999999998753378999999998765555444322 689999999864211 111235789998
Q ss_pred EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
+...+|+. . +.++.++.++|||||.|+|
T Consensus 208 ~Dva~pdq--~--------~il~~na~r~LKpGG~~vI 235 (293)
T PTZ00146 208 ADVAQPDQ--A--------RIVALNAQYFLKNGGHFII 235 (293)
T ss_pred EeCCCcch--H--------HHHHHHHHHhccCCCEEEE
Confidence 87765542 1 2667789999999999875
No 103
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.36 E-value=7.3e-12 Score=116.91 Aligned_cols=112 Identities=19% Similarity=0.217 Sum_probs=85.0
Q ss_pred CCCcEEEEcCCccHHHHHHHHHC-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRN-PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV 202 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~-p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V 202 (241)
++.+|||+|||+|..+..+++.. +. +.|+|+|+++++++.+++++++.|+.+++++++|+.+... ..++.||.|
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~~~~-~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~----~~~~~fD~V 324 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELLKNT-GKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHE----KFAEKFDKI 324 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccc----hhcccCCEE
Confidence 46789999999999999999986 45 7999999999999999999999998889999999976311 123678988
Q ss_pred EEeCCCC-------chhhh--hh-----hcccchHHHHHHHHhccccCCEEE
Q 026219 203 SILCPDP-------HFKKK--HH-----KRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 203 ~~~~~~~-------~~~~~--~~-----~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
++..|-. +++.. .. +-...+..+++++.++|||||.++
T Consensus 325 l~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lv 376 (444)
T PRK14902 325 LVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILV 376 (444)
T ss_pred EEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 8765411 00000 00 000134679999999999999986
No 104
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.36 E-value=8.4e-12 Score=116.55 Aligned_cols=112 Identities=14% Similarity=0.152 Sum_probs=85.0
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS 203 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~ 203 (241)
++.+|||+|||+|..+..+++..+..+.|+|+|+|+.+++.+++++++.|+.+++++.+|+.+. . ++..||.|+
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~-----~-~~~~fD~Vl 323 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSF-----S-PEEQPDAIL 323 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCccccc-----c-cCCCCCEEE
Confidence 4689999999999999999987643368999999999999999999999988899999999762 1 246799888
Q ss_pred EeCCC---------C---chhhhh--hhcccchHHHHHHHHhccccCCEEEc
Q 026219 204 ILCPD---------P---HFKKKH--HKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 204 ~~~~~---------~---~~~~~~--~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
+..|- | |..... .+-...+..+|+++.++|||||++++
T Consensus 324 ~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvy 375 (445)
T PRK14904 324 LDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVY 375 (445)
T ss_pred EcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 75331 1 100000 00001345799999999999999874
No 105
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.36 E-value=7.8e-12 Score=116.31 Aligned_cols=114 Identities=19% Similarity=0.211 Sum_probs=86.2
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS 203 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~ 203 (241)
++.+|||+|||+|..+..+++...+.++|+++|+|+.+++.+++++++.|+.+++++++|+.+. +. ..++.||.|+
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l-~~---~~~~~fD~Vl 312 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERL-TE---YVQDTFDRIL 312 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhh-hh---hhhccCCEEE
Confidence 4679999999999999999998643379999999999999999999999988899999999752 11 1246789888
Q ss_pred EeCCCC----chhhhhhhcc----------cchHHHHHHHHhccccCCEEEc
Q 026219 204 ILCPDP----HFKKKHHKRR----------VVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 204 ~~~~~~----~~~~~~~~~r----------~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
+..|-. ....+..+++ ..+.++|.++.+.|||||.+++
T Consensus 313 ~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvY 364 (431)
T PRK14903 313 VDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLY 364 (431)
T ss_pred ECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 754321 0000000001 1567899999999999999863
No 106
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.36 E-value=3.2e-12 Score=111.63 Aligned_cols=106 Identities=21% Similarity=0.258 Sum_probs=74.3
Q ss_pred CCcEEEEcCCccH----HHHHHHHHCCC----CcEEEEEeCCHHHHHHHHHHHHH----hC-------------------
Q 026219 125 LPLMVDIGSGSGR----FLIWLARRNPD----SGNYLGLEIRQKLVKRAEFWVQE----LA------------------- 173 (241)
Q Consensus 125 ~~~VLDIGCGtG~----~~~~la~~~p~----~~~v~giDis~~~v~~a~~~~~~----~~------------------- 173 (241)
+.+|+|+|||+|. +++.+++.++. ..+|+|+|+|+.|++.|++.+-. .+
T Consensus 100 ~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v 179 (264)
T smart00138 100 RVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRV 179 (264)
T ss_pred CEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEE
Confidence 4689999999996 56666665441 26899999999999999975310 01
Q ss_pred ---C-CCEEEEEccccchHHhhccCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 174 ---L-SNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 174 ---l-~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
+ .+++|.+.|+.+ .+.+++.||+|++.....++... ....+++++++.|+|||.+++
T Consensus 180 ~~~ir~~V~F~~~dl~~-----~~~~~~~fD~I~crnvl~yf~~~------~~~~~l~~l~~~L~pGG~L~l 240 (264)
T smart00138 180 KPELKERVRFAKHNLLA-----ESPPLGDFDLIFCRNVLIYFDEP------TQRKLLNRFAEALKPGGYLFL 240 (264)
T ss_pred ChHHhCcCEEeeccCCC-----CCCccCCCCEEEechhHHhCCHH------HHHHHHHHHHHHhCCCeEEEE
Confidence 1 268899999976 22235789988764322222110 114899999999999999985
No 107
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.36 E-value=5.1e-12 Score=118.68 Aligned_cols=110 Identities=20% Similarity=0.324 Sum_probs=80.1
Q ss_pred HHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCC
Q 026219 118 EVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPG 197 (241)
Q Consensus 118 ~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~ 197 (241)
+.+...++.+|||||||+|.++..+++.. .+|+|+|+|++|++.+++.. ...++++++++|+.+. ..+.++.
T Consensus 31 ~~l~~~~~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~~--~~~~~i~~~~~d~~~~---~~~~~~~ 102 (475)
T PLN02336 31 SLLPPYEGKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESIN--GHYKNVKFMCADVTSP---DLNISDG 102 (475)
T ss_pred hhcCccCCCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHh--ccCCceEEEEeccccc---ccCCCCC
Confidence 33333346789999999999999999874 46999999999998876532 2236899999999641 1233467
Q ss_pred cEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 198 PLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 198 ~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
+||.|+..++..+..+. ....+++++.++|||||.+++
T Consensus 103 ~fD~I~~~~~l~~l~~~------~~~~~l~~~~r~Lk~gG~l~~ 140 (475)
T PLN02336 103 SVDLIFSNWLLMYLSDK------EVENLAERMVKWLKVGGYIFF 140 (475)
T ss_pred CEEEEehhhhHHhCCHH------HHHHHHHHHHHhcCCCeEEEE
Confidence 89999876544332211 014899999999999999875
No 108
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.35 E-value=6.2e-12 Score=115.27 Aligned_cols=100 Identities=16% Similarity=0.172 Sum_probs=75.4
Q ss_pred CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219 123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV 202 (241)
Q Consensus 123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V 202 (241)
.++.+|||||||+|.++..+++.+ + ++|+|+|+|+++++.|+++++ ++ ++++...|..+ . +++||.|
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~-g-~~V~giDlS~~~l~~A~~~~~--~l-~v~~~~~D~~~-----l---~~~fD~I 232 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHY-G-VSVVGVTISAEQQKLAQERCA--GL-PVEIRLQDYRD-----L---NGQFDRI 232 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHC-C-CEEEEEeCCHHHHHHHHHHhc--cC-eEEEEECchhh-----c---CCCCCEE
Confidence 356899999999999999999876 4 689999999999999999874 33 47888888754 2 4678877
Q ss_pred EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
+....-.+... .-.+.+++++.++|||||.+++
T Consensus 233 vs~~~~ehvg~------~~~~~~l~~i~r~LkpGG~lvl 265 (383)
T PRK11705 233 VSVGMFEHVGP------KNYRTYFEVVRRCLKPDGLFLL 265 (383)
T ss_pred EEeCchhhCCh------HHHHHHHHHHHHHcCCCcEEEE
Confidence 64321111100 0114899999999999999875
No 109
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.35 E-value=3.9e-12 Score=107.45 Aligned_cols=107 Identities=17% Similarity=0.205 Sum_probs=73.3
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccch--HHhhcc-CCCCcEe
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVS--FKQLVS-SYPGPLM 200 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~--~~~~~~-~~~~~~d 200 (241)
++.+|||||||+|.++..++++.+..+.|+|||+++ | .+..+++++++|+.+. ++.+.. ..++.+|
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D 119 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPIVGVDFLQGDFRDELVLKALLERVGDSKVQ 119 (209)
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCCCCcEEEecCCCChHHHHHHHHHhCCCCCC
Confidence 467999999999999999999874326899999998 1 1346799999999863 222211 1357899
Q ss_pred EEEEeCCCCchhh---hhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 201 LVSILCPDPHFKK---KHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 201 ~V~~~~~~~~~~~---~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
.|+......+... ...........+++++.++|||||.|++
T Consensus 120 ~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi 163 (209)
T PRK11188 120 VVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVV 163 (209)
T ss_pred EEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 8887552211100 0000111235799999999999999875
No 110
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.35 E-value=1.3e-11 Score=104.53 Aligned_cols=103 Identities=21% Similarity=0.321 Sum_probs=87.4
Q ss_pred CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCC-EEEEE-ccccchHHhhccCCCCcEeEE
Q 026219 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IHFLF-ANASVSFKQLVSSYPGPLMLV 202 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~n-i~~~~-~D~~~~~~~~~~~~~~~~d~V 202 (241)
.++|||||++.|..++.++...|++++++.||+++++.+.|++++++.|+.+ +..+. +|+.+.+.. ...++||+|
T Consensus 60 ~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~---~~~~~fDli 136 (219)
T COG4122 60 PKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSR---LLDGSFDLV 136 (219)
T ss_pred CceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHh---ccCCCccEE
Confidence 5899999999999999999999844899999999999999999999999965 88888 598876554 236899999
Q ss_pred EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
++...-. -+..+++.+.++|+|||.+++
T Consensus 137 FIDadK~-----------~yp~~le~~~~lLr~GGliv~ 164 (219)
T COG4122 137 FIDADKA-----------DYPEYLERALPLLRPGGLIVA 164 (219)
T ss_pred EEeCChh-----------hCHHHHHHHHHHhCCCcEEEE
Confidence 8875322 125999999999999999874
No 111
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=4e-12 Score=111.87 Aligned_cols=107 Identities=19% Similarity=0.188 Sum_probs=81.6
Q ss_pred hhhHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCC-EEEEEccccchHHhhc
Q 026219 114 PDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IHFLFANASVSFKQLV 192 (241)
Q Consensus 114 ~~~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~n-i~~~~~D~~~~~~~~~ 192 (241)
.+|.+.+.+ ++.+|||+|||+|.+++..++.... .++|+|++|-+++.|++|++.|++.. ++....+..+ ..
T Consensus 153 L~~Le~~~~-~g~~vlDvGcGSGILaIAa~kLGA~--~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~----~~ 225 (300)
T COG2264 153 LEALEKLLK-KGKTVLDVGCGSGILAIAAAKLGAK--KVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLE----VP 225 (300)
T ss_pred HHHHHHhhc-CCCEEEEecCChhHHHHHHHHcCCc--eEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchh----hc
Confidence 456666655 4789999999999999999998654 79999999999999999999998864 2222222222 11
Q ss_pred cCCCCcEeEEEEeC-CCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 193 SSYPGPLMLVSILC-PDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 193 ~~~~~~~d~V~~~~-~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
..+.+|+|+.|. .++. ..+...+.+.|||||++++
T Consensus 226 --~~~~~DvIVANILA~vl------------~~La~~~~~~lkpgg~lIl 261 (300)
T COG2264 226 --ENGPFDVIVANILAEVL------------VELAPDIKRLLKPGGRLIL 261 (300)
T ss_pred --ccCcccEEEehhhHHHH------------HHHHHHHHHHcCCCceEEE
Confidence 125899998776 2332 3899999999999999875
No 112
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.34 E-value=1.5e-11 Score=114.27 Aligned_cols=114 Identities=17% Similarity=0.255 Sum_probs=85.3
Q ss_pred CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219 123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV 202 (241)
Q Consensus 123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V 202 (241)
.++.+|||+|||+|..+..+++..++ ..|+|+|+|+.+++.+++++++.|+. ++++.+|+.+. +... .+++||.|
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~~~~g~~-~~~~~~D~~~~-~~~~--~~~~fD~V 317 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRENLQRLGLK-ATVIVGDARDP-AQWW--DGQPFDRI 317 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEcCcccc-hhhc--ccCCCCEE
Confidence 35789999999999999999999876 79999999999999999999988874 78999999752 1111 24678988
Q ss_pred EEeCCCC------------chhhh--hhhcccchHHHHHHHHhccccCCEEEc
Q 026219 203 SILCPDP------------HFKKK--HHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 203 ~~~~~~~------------~~~~~--~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
++..|-. |.... ..+-...+.++++.+.++|||||.+++
T Consensus 318 l~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvy 370 (427)
T PRK10901 318 LLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLY 370 (427)
T ss_pred EECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 8765421 10000 000012456899999999999999873
No 113
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.34 E-value=1e-11 Score=104.44 Aligned_cols=97 Identities=16% Similarity=0.134 Sum_probs=71.8
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS 203 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~ 203 (241)
++.+|||||||+|..+..+++..++ ..++|||+|++|++.|+++. +++.++++|+.+ +..+++||+|+
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~-~~v~giDiS~~~l~~A~~~~-----~~~~~~~~d~~~------~~~~~sfD~V~ 110 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPF-KHIYGVEINEYAVEKAKAYL-----PNINIIQGSLFD------PFKDNFFDLVL 110 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCC-CeEEEEECCHHHHHHHHhhC-----CCCcEEEeeccC------CCCCCCEEEEE
Confidence 4578999999999999999998777 78999999999999998753 457788888865 12468899987
Q ss_pred EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
......+... .....+++++++++ ++.++
T Consensus 111 ~~~vL~hl~p------~~~~~~l~el~r~~--~~~v~ 139 (204)
T TIGR03587 111 TKGVLIHINP------DNLPTAYRELYRCS--NRYIL 139 (204)
T ss_pred ECChhhhCCH------HHHHHHHHHHHhhc--CcEEE
Confidence 6443221110 01148889999987 34554
No 114
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.33 E-value=3.2e-12 Score=105.77 Aligned_cols=106 Identities=18% Similarity=0.256 Sum_probs=75.3
Q ss_pred hcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcE
Q 026219 120 YKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPL 199 (241)
Q Consensus 120 ~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~ 199 (241)
++.+.-.++||+|||+|.++..|+.+- ..++++|+|+.+++.|++++. +.++++|+++|+.+. .+++.|
T Consensus 39 Lp~~ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~--~~~~V~~~~~dvp~~------~P~~~F 107 (201)
T PF05401_consen 39 LPRRRYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLA--GLPHVEWIQADVPEF------WPEGRF 107 (201)
T ss_dssp HTTSSEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTT--T-SSEEEEES-TTT---------SS-E
T ss_pred cCccccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcC--CCCCeEEEECcCCCC------CCCCCe
Confidence 455555789999999999999999984 369999999999999999886 457999999999762 257899
Q ss_pred eEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 200 MLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 200 d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
|+|++.-..-+.... .....+++.+...|+|||.+++
T Consensus 108 DLIV~SEVlYYL~~~-----~~L~~~l~~l~~~L~pgG~LV~ 144 (201)
T PF05401_consen 108 DLIVLSEVLYYLDDA-----EDLRAALDRLVAALAPGGHLVF 144 (201)
T ss_dssp EEEEEES-GGGSSSH-----HHHHHHHHHHHHTEEEEEEEEE
T ss_pred eEEEEehHhHcCCCH-----HHHHHHHHHHHHHhCCCCEEEE
Confidence 998764221111100 0114789999999999999985
No 115
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.32 E-value=1.2e-11 Score=104.63 Aligned_cols=103 Identities=18% Similarity=0.273 Sum_probs=79.3
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS 203 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~ 203 (241)
.+.+|||+|||+|.++..+++.. ..++|+|+++.+++.+++++...+..++++..+|+.+.. ...++.+|.|+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~~D~i~ 117 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG---ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLA----EKGAKSFDVVT 117 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhh----cCCCCCccEEE
Confidence 36789999999999999988863 459999999999999999888776657899999987521 11246899887
Q ss_pred EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
....-.+..+. ..+++++.++|+|||.+++
T Consensus 118 ~~~~l~~~~~~--------~~~l~~~~~~L~~gG~l~i 147 (224)
T TIGR01983 118 CMEVLEHVPDP--------QAFIRACAQLLKPGGILFF 147 (224)
T ss_pred ehhHHHhCCCH--------HHHHHHHHHhcCCCcEEEE
Confidence 65322222222 4899999999999999874
No 116
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.31 E-value=8.5e-12 Score=110.34 Aligned_cols=105 Identities=21% Similarity=0.225 Sum_probs=76.7
Q ss_pred hhHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccC
Q 026219 115 DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSS 194 (241)
Q Consensus 115 ~~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~ 194 (241)
++...+.. ++.+|||+|||||.+++..++.... +|+|+|++|.+++.|++|++.|++.. ++......+ .
T Consensus 153 ~~l~~~~~-~g~~vLDvG~GSGILaiaA~klGA~--~v~a~DiDp~Av~~a~~N~~~N~~~~-~~~v~~~~~-------~ 221 (295)
T PF06325_consen 153 ELLEKYVK-PGKRVLDVGCGSGILAIAAAKLGAK--KVVAIDIDPLAVEAARENAELNGVED-RIEVSLSED-------L 221 (295)
T ss_dssp HHHHHHSS-TTSEEEEES-TTSHHHHHHHHTTBS--EEEEEESSCHHHHHHHHHHHHTT-TT-CEEESCTSC-------T
T ss_pred HHHHHhcc-CCCEEEEeCCcHHHHHHHHHHcCCC--eEEEecCCHHHHHHHHHHHHHcCCCe-eEEEEEecc-------c
Confidence 34444544 3689999999999999999997654 79999999999999999999999864 332222221 1
Q ss_pred CCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 195 YPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 195 ~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
..+.||+|+.|.... +...++..+.++|+|||.+++
T Consensus 222 ~~~~~dlvvANI~~~-----------vL~~l~~~~~~~l~~~G~lIl 257 (295)
T PF06325_consen 222 VEGKFDLVVANILAD-----------VLLELAPDIASLLKPGGYLIL 257 (295)
T ss_dssp CCS-EEEEEEES-HH-----------HHHHHHHHCHHHEEEEEEEEE
T ss_pred ccccCCEEEECCCHH-----------HHHHHHHHHHHhhCCCCEEEE
Confidence 248899999886432 224788889999999999875
No 117
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.30 E-value=1.9e-11 Score=103.45 Aligned_cols=100 Identities=17% Similarity=0.170 Sum_probs=75.5
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCCCcEeEE
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYPGPLMLV 202 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~~~~d~V 202 (241)
++.+|||||||+|.++..+++. + ..++|+|+|++|++.|++++...+. .++.+.++|+.+ . +.++|.|
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~--~-~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-----~---~~~fD~i 123 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKR--G-AIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLS-----L---CGEFDIV 123 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHC--C-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhh-----C---CCCcCEE
Confidence 4689999999999999999886 3 5799999999999999999887665 479999999875 2 2678877
Q ss_pred EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
+....-.+.... ....+++++.+++++++.+.
T Consensus 124 i~~~~l~~~~~~------~~~~~l~~i~~~~~~~~~i~ 155 (219)
T TIGR02021 124 VCMDVLIHYPAS------DMAKALGHLASLTKERVIFT 155 (219)
T ss_pred EEhhHHHhCCHH------HHHHHHHHHHHHhCCCEEEE
Confidence 653221111000 01478999999998776654
No 118
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.30 E-value=2.8e-11 Score=102.65 Aligned_cols=100 Identities=22% Similarity=0.221 Sum_probs=72.6
Q ss_pred CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCCCcEeE
Q 026219 123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYPGPLML 201 (241)
Q Consensus 123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~~~~d~ 201 (241)
+++.+|||||||+|.++..+++.. ..++|+|+|++|++.|+++....+. .++++..+|+.. .+++||.
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~---~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~--------~~~~fD~ 130 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRG---AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES--------LLGRFDT 130 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh--------ccCCcCE
Confidence 456799999999999999999873 4699999999999999999887776 479999999532 2467898
Q ss_pred EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEE
Q 026219 202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKV 239 (241)
Q Consensus 202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l 239 (241)
|+......+.... ....+++++.+.+++++.+
T Consensus 131 v~~~~~l~~~~~~------~~~~~l~~l~~~~~~~~~i 162 (230)
T PRK07580 131 VVCLDVLIHYPQE------DAARMLAHLASLTRGSLIF 162 (230)
T ss_pred EEEcchhhcCCHH------HHHHHHHHHHhhcCCeEEE
Confidence 8654322111100 0147788888877655544
No 119
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.29 E-value=3.7e-11 Score=110.54 Aligned_cols=113 Identities=14% Similarity=0.063 Sum_probs=83.0
Q ss_pred CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC--CEEEEEccccchHHhhccCCCCcEeEE
Q 026219 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS--NIHFLFANASVSFKQLVSSYPGPLMLV 202 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~--ni~~~~~D~~~~~~~~~~~~~~~~d~V 202 (241)
+.+|||+|||+|.+++..+.. +. .+|+++|+|+.+++.|++|++.+++. +++++++|+.+.+..... ....||.|
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~-ga-~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~-~~~~fDlV 297 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMG-GC-SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRD-RGEKFDVI 297 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhC-CC-CEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHh-cCCCCCEE
Confidence 678999999999999876654 23 48999999999999999999999874 799999999876544321 23579999
Q ss_pred EEeCCCCchhhhh--hhcccchHHHHHHHHhccccCCEEEc
Q 026219 203 SILCPDPHFKKKH--HKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 203 ~~~~~~~~~~~~~--~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
+++.|-- .+... .....-+..+++.+.++|+|||.++.
T Consensus 298 ilDPP~f-~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~ 337 (396)
T PRK15128 298 VMDPPKF-VENKSQLMGACRGYKDINMLAIQLLNPGGILLT 337 (396)
T ss_pred EECCCCC-CCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEE
Confidence 8876531 11110 00001245777788999999998863
No 120
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.29 E-value=2.7e-11 Score=104.57 Aligned_cols=101 Identities=23% Similarity=0.342 Sum_probs=81.9
Q ss_pred CCCCcEEEEcCCccHHHHHHHHHC-CCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccc-hHHhhccCCCCcE
Q 026219 123 PTLPLMVDIGSGSGRFLIWLARRN-PDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASV-SFKQLVSSYPGPL 199 (241)
Q Consensus 123 ~~~~~VLDIGCGtG~~~~~la~~~-p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~-~~~~~~~~~~~~~ 199 (241)
.++.+|||.|.|+|.++..|++.. |. ++|+..|+.++.++.|+++++..++. |+.+.+.|+.+ .++ ...+..+
T Consensus 39 ~pG~~VlEaGtGSG~lt~~l~r~v~p~-G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~---~~~~~~~ 114 (247)
T PF08704_consen 39 RPGSRVLEAGTGSGSLTHALARAVGPT-GHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFD---EELESDF 114 (247)
T ss_dssp -TT-EEEEE--TTSHHHHHHHHHHTTT-SEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--S---TT-TTSE
T ss_pred CCCCEEEEecCCcHHHHHHHHHHhCCC-eEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccc---ccccCcc
Confidence 358999999999999999999875 55 89999999999999999999999985 89999999964 221 1124679
Q ss_pred eEEEEeCCCCchhhhhhhcccchHHHHHHHHhcc-ccCCEEE
Q 026219 200 MLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYL-MPGGKVY 240 (241)
Q Consensus 200 d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~L-kpGG~l~ 240 (241)
|.|++..|+|| ..+..+.+.| ||||.+.
T Consensus 115 DavfLDlp~Pw-------------~~i~~~~~~L~~~gG~i~ 143 (247)
T PF08704_consen 115 DAVFLDLPDPW-------------EAIPHAKRALKKPGGRIC 143 (247)
T ss_dssp EEEEEESSSGG-------------GGHHHHHHHE-EEEEEEE
T ss_pred cEEEEeCCCHH-------------HHHHHHHHHHhcCCceEE
Confidence 99999999998 7788899999 8999885
No 121
>PLN02366 spermidine synthase
Probab=99.28 E-value=4e-11 Score=106.81 Aligned_cols=110 Identities=20% Similarity=0.317 Sum_probs=86.2
Q ss_pred CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHh--CC--CCEEEEEccccchHHhhccCCCCc
Q 026219 123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQEL--AL--SNIHFLFANASVSFKQLVSSYPGP 198 (241)
Q Consensus 123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~--~l--~ni~~~~~D~~~~~~~~~~~~~~~ 198 (241)
++..+||+||||.|..+..+++..+. .+|+.||+++++++.|++.+... ++ ++++++.+|+.+.+... +++.
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v-~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~---~~~~ 165 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSV-EQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNA---PEGT 165 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCC-CeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhc---cCCC
Confidence 44688999999999999999876333 68999999999999999987542 22 47999999998754322 2467
Q ss_pred EeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 199 LMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 199 ~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
+|+|++...+|+.. ...+....+++.+.+.|+|||.+.
T Consensus 166 yDvIi~D~~dp~~~----~~~L~t~ef~~~~~~~L~pgGvlv 203 (308)
T PLN02366 166 YDAIIVDSSDPVGP----AQELFEKPFFESVARALRPGGVVC 203 (308)
T ss_pred CCEEEEcCCCCCCc----hhhhhHHHHHHHHHHhcCCCcEEE
Confidence 99999887776532 123455789999999999999985
No 122
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.28 E-value=5.7e-11 Score=99.59 Aligned_cols=103 Identities=18% Similarity=0.123 Sum_probs=78.4
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS 203 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~ 203 (241)
++.+|||+|||+|.+++.++.+.. .+|+++|+++++++.+++|++.++..+++++.+|+.+.+.. ....+|+|+
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a--~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~----~~~~fDlV~ 126 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYA--AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQ----PGTPHNVVF 126 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhh----cCCCceEEE
Confidence 357999999999999997555543 48999999999999999999998888899999999764322 235699988
Q ss_pred EeCCCCchhhhhhhcccchHHHHHHHHh--ccccCCEEEc
Q 026219 204 ILCPDPHFKKKHHKRRVVQKPLVDSIID--YLMPGGKVYF 241 (241)
Q Consensus 204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r--~LkpGG~l~~ 241 (241)
++.|-. . -..+.+++.+.. +|+|+|.+++
T Consensus 127 ~DPPy~--~-------g~~~~~l~~l~~~~~l~~~~iv~v 157 (199)
T PRK10909 127 VDPPFR--K-------GLLEETINLLEDNGWLADEALIYV 157 (199)
T ss_pred ECCCCC--C-------ChHHHHHHHHHHCCCcCCCcEEEE
Confidence 876521 1 122466666655 4799998875
No 123
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.28 E-value=3e-11 Score=102.99 Aligned_cols=102 Identities=22% Similarity=0.334 Sum_probs=78.4
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS 203 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~ 203 (241)
++.+|||||||+|.++..+++. . .+++|+|+++++++.++++....+. ++++..+|+.+.. ...++.+|.|+
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~--~-~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~fD~Ii 119 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARL--G-ADVTGIDASEENIEVARLHALESGL-KIDYRQTTAEELA----AEHPGQFDVVT 119 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHc--C-CeEEEEcCCHHHHHHHHHHHHHcCC-ceEEEecCHHHhh----hhcCCCccEEE
Confidence 4678999999999999999886 4 5799999999999999998876665 6788888886521 11347899887
Q ss_pred EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
+...-.+..+. ..+++.+.++|+|||.+++
T Consensus 120 ~~~~l~~~~~~--------~~~l~~~~~~L~~gG~l~v 149 (233)
T PRK05134 120 CMEMLEHVPDP--------ASFVRACAKLVKPGGLVFF 149 (233)
T ss_pred EhhHhhccCCH--------HHHHHHHHHHcCCCcEEEE
Confidence 65432222222 4889999999999999875
No 124
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.28 E-value=2e-11 Score=101.04 Aligned_cols=106 Identities=11% Similarity=0.160 Sum_probs=71.8
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccch--HHhhcc-CCCCcEe
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVS--FKQLVS-SYPGPLM 200 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~--~~~~~~-~~~~~~d 200 (241)
++.+|||||||+|.++..+++++...++|+|+|+|+.+ +..+++++.+|+.+. .+.+.. ..+..+|
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D 100 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLNKIRERVGDDKVD 100 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCCChhHHHHHHHHhCCCCcc
Confidence 47899999999999999999887432789999999964 225788898998652 111111 1346799
Q ss_pred EEEEeCCCC----chhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 201 LVSILCPDP----HFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 201 ~V~~~~~~~----~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
.|+...+.+ |... +.......+.+++.+.++|+|||++++
T Consensus 101 ~V~~~~~~~~~g~~~~~-~~~~~~~~~~~l~~~~~~LkpgG~lvi 144 (188)
T TIGR00438 101 VVMSDAAPNISGYWDID-HLRSIDLVELALDIAKEVLKPKGNFVV 144 (188)
T ss_pred EEEcCCCCCCCCCcccc-HHHHHHHHHHHHHHHHHHccCCCEEEE
Confidence 888754211 1100 000111235899999999999999875
No 125
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.27 E-value=8.8e-12 Score=105.60 Aligned_cols=104 Identities=14% Similarity=0.294 Sum_probs=77.1
Q ss_pred cEEEEcCCccHHHHHHHHHCCC-CcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhh-ccCCCCcEeEEEE
Q 026219 127 LMVDIGSGSGRFLIWLARRNPD-SGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQL-VSSYPGPLMLVSI 204 (241)
Q Consensus 127 ~VLDIGCGtG~~~~~la~~~p~-~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~-~~~~~~~~d~V~~ 204 (241)
+|||||||.|++...+.+..++ ...++++|.||.+++..+++..... +++...+.|+.. +.+ .+..++++|.+++
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-~~~~afv~Dlt~--~~~~~~~~~~svD~it~ 150 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE-SRVEAFVWDLTS--PSLKEPPEEGSVDIITL 150 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch-hhhcccceeccc--hhccCCCCcCccceEEE
Confidence 8999999999999999997653 2689999999999999988654332 456677777764 221 2224688998765
Q ss_pred eC--CCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 205 LC--PDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 205 ~~--~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
.| +.-++.+. +..+++++++|||||.++|
T Consensus 151 IFvLSAi~pek~--------~~a~~nl~~llKPGG~llf 181 (264)
T KOG2361|consen 151 IFVLSAIHPEKM--------QSVIKNLRTLLKPGGSLLF 181 (264)
T ss_pred EEEEeccChHHH--------HHHHHHHHHHhCCCcEEEE
Confidence 54 22223322 4999999999999999985
No 126
>PRK06202 hypothetical protein; Provisional
Probab=99.27 E-value=2.8e-11 Score=103.36 Aligned_cols=96 Identities=17% Similarity=0.095 Sum_probs=68.9
Q ss_pred CCCcEEEEcCCccHHHHHHHHH----CCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcE
Q 026219 124 TLPLMVDIGSGSGRFLIWLARR----NPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPL 199 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~----~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~ 199 (241)
++.+|||||||+|.++..|++. .++ .+++|+|+|++|++.|+++... .++++...|+.. ++..++++
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~-~~v~gvD~s~~~l~~a~~~~~~---~~~~~~~~~~~~-----l~~~~~~f 130 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLR-LEVTAIDPDPRAVAFARANPRR---PGVTFRQAVSDE-----LVAEGERF 130 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCC-cEEEEEcCCHHHHHHHHhcccc---CCCeEEEEeccc-----ccccCCCc
Confidence 4578999999999999988764 344 6899999999999999886532 345666666543 12246789
Q ss_pred eEEEEeCCCCchhhhhhhcccchHHHHHHHHhccc
Q 026219 200 MLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLM 234 (241)
Q Consensus 200 d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~Lk 234 (241)
|+|+.++.-.|..+.. ...+++++.++++
T Consensus 131 D~V~~~~~lhh~~d~~------~~~~l~~~~r~~~ 159 (232)
T PRK06202 131 DVVTSNHFLHHLDDAE------VVRLLADSAALAR 159 (232)
T ss_pred cEEEECCeeecCChHH------HHHHHHHHHHhcC
Confidence 9987765443332210 1379999999998
No 127
>PRK01581 speE spermidine synthase; Validated
Probab=99.27 E-value=3.2e-11 Score=108.85 Aligned_cols=111 Identities=13% Similarity=0.102 Sum_probs=84.9
Q ss_pred CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHH--H---HHh--CCCCEEEEEccccchHHhhccCC
Q 026219 123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFW--V---QEL--ALSNIHFLFANASVSFKQLVSSY 195 (241)
Q Consensus 123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~--~---~~~--~l~ni~~~~~D~~~~~~~~~~~~ 195 (241)
++..+||+||||.|..+..+.+..+. .+|++||+++++++.|++. + .+. .-++++++.+|+.+++.. .
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v-~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~----~ 223 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETV-LHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSS----P 223 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCC-CeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHh----c
Confidence 44579999999999999988886554 6899999999999999962 1 111 225799999999875433 2
Q ss_pred CCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 196 PGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 196 ~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
+..||+|++..++|... .-.+.....+++.+.+.|+|||.++.
T Consensus 224 ~~~YDVIIvDl~DP~~~---~~~~LyT~EFy~~~~~~LkPgGV~V~ 266 (374)
T PRK01581 224 SSLYDVIIIDFPDPATE---LLSTLYTSELFARIATFLTEDGAFVC 266 (374)
T ss_pred CCCccEEEEcCCCcccc---chhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 56799999998876421 11234557899999999999999863
No 128
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.26 E-value=4.5e-11 Score=117.37 Aligned_cols=110 Identities=17% Similarity=0.155 Sum_probs=84.5
Q ss_pred CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC--CEEEEEccccchHHhhccCCCCcEeEE
Q 026219 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS--NIHFLFANASVSFKQLVSSYPGPLMLV 202 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~--ni~~~~~D~~~~~~~~~~~~~~~~d~V 202 (241)
+.+|||+|||+|.+++.+++... .+|++||+|+.+++.|++|++.+++. +++++++|+.+++... ...||+|
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga--~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~----~~~fDlI 612 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGA--KSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEA----REQFDLI 612 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHc----CCCcCEE
Confidence 67999999999999999998633 37999999999999999999999885 6999999998754332 4679999
Q ss_pred EEeCCCCchhhhh----hhcccchHHHHHHHHhccccCCEEEc
Q 026219 203 SILCPDPHFKKKH----HKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 203 ~~~~~~~~~~~~~----~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
+++.|.- .+... ..-..-+..+++.+.++|+|||.+++
T Consensus 613 ilDPP~f-~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~ 654 (702)
T PRK11783 613 FIDPPTF-SNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYF 654 (702)
T ss_pred EECCCCC-CCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 8875531 00000 00011245788999999999999875
No 129
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.26 E-value=7e-11 Score=102.11 Aligned_cols=106 Identities=20% Similarity=0.277 Sum_probs=87.7
Q ss_pred CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccC--CCCcEeE
Q 026219 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSS--YPGPLML 201 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~--~~~~~d~ 201 (241)
..+|||||+++|..++.+++..+.+++++.+|++++..+.|++++++.|+ .+|+++.+|+.+.++.+.+. ..++||.
T Consensus 80 ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~ 159 (247)
T PLN02589 80 AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDF 159 (247)
T ss_pred CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccE
Confidence 47899999999999999998876448999999999999999999999997 57999999999887775432 2368999
Q ss_pred EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
|++..- +.. +..+++.+.++|+|||.|++
T Consensus 160 iFiDad----K~~-------Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 160 IFVDAD----KDN-------YINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred EEecCC----HHH-------hHHHHHHHHHhcCCCeEEEE
Confidence 887642 221 25888999999999999874
No 130
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.26 E-value=8.5e-11 Score=109.24 Aligned_cols=115 Identities=17% Similarity=0.227 Sum_probs=81.6
Q ss_pred CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCCCcEeE
Q 026219 123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYPGPLML 201 (241)
Q Consensus 123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~~d~ 201 (241)
.++.+|||+|||+|..+..+++..+. ++|+|+|+++++++.+++++++.|+. ++.+..+|.... +... .++.||.
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~~~~~-~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~-~~~~--~~~~fD~ 312 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILELAPQ-AQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGP-SQWA--ENEQFDR 312 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccc-cccc--cccccCE
Confidence 35789999999999999999998875 79999999999999999999998876 233366676531 1100 2467898
Q ss_pred EEEeCCC---------C---chhhhh--hhcccchHHHHHHHHhccccCCEEEc
Q 026219 202 VSILCPD---------P---HFKKKH--HKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 202 V~~~~~~---------~---~~~~~~--~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
|++.-|- | |..... .+-...+..+|+++.++|||||++++
T Consensus 313 VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvy 366 (426)
T TIGR00563 313 ILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVY 366 (426)
T ss_pred EEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 8765321 1 000000 00011457899999999999999873
No 131
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.26 E-value=8.6e-11 Score=102.89 Aligned_cols=110 Identities=14% Similarity=0.177 Sum_probs=84.3
Q ss_pred CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhC----CCCEEEEEccccchHHhhccCCCCc
Q 026219 123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELA----LSNIHFLFANASVSFKQLVSSYPGP 198 (241)
Q Consensus 123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~----l~ni~~~~~D~~~~~~~~~~~~~~~ 198 (241)
++..+|||||||+|..+..+++..+. .+++++|+++++++.+++++...+ .++++++.+|+.+.+.. .++.
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~-~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~----~~~~ 145 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSV-EKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLAD----TENT 145 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCc-ceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHh----CCCC
Confidence 34569999999999999998886544 689999999999999999875432 24688999998765432 2578
Q ss_pred EeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 199 LMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 199 ~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
+|+|++..++|.... .......+++.+.+.|+|||.+++
T Consensus 146 yDvIi~D~~~~~~~~----~~l~~~ef~~~~~~~L~pgG~lv~ 184 (270)
T TIGR00417 146 FDVIIVDSTDPVGPA----ETLFTKEFYELLKKALNEDGIFVA 184 (270)
T ss_pred ccEEEEeCCCCCCcc----cchhHHHHHHHHHHHhCCCcEEEE
Confidence 999988776553211 123346899999999999999874
No 132
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.25 E-value=6.4e-11 Score=110.57 Aligned_cols=102 Identities=25% Similarity=0.287 Sum_probs=78.8
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS 203 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~ 203 (241)
++.+|||+|||+|.+++.+++.. ..|+|+|+|++|++.|++|++.++++|++++.+|+.+.+... ...+.++|.|+
T Consensus 297 ~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~-~~~~~~fD~Vi 372 (443)
T PRK13168 297 PGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQ-PWALGGFDKVL 372 (443)
T ss_pred CCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhh-hhhcCCCCEEE
Confidence 46799999999999999999884 479999999999999999999888889999999997643221 11245789888
Q ss_pred EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
++.|-... ...++.+.+ ++|++.+|+
T Consensus 373 ~dPPr~g~-----------~~~~~~l~~-~~~~~ivyv 398 (443)
T PRK13168 373 LDPPRAGA-----------AEVMQALAK-LGPKRIVYV 398 (443)
T ss_pred ECcCCcCh-----------HHHHHHHHh-cCCCeEEEE
Confidence 76543211 255666665 689888875
No 133
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=6e-11 Score=97.38 Aligned_cols=91 Identities=23% Similarity=0.383 Sum_probs=70.9
Q ss_pred CCCCCCCh---hhhHH-HhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEE
Q 026219 106 SFTVPAPI---PDWSE-VYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLF 181 (241)
Q Consensus 106 ~~~~~~~~---~~~~~-~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~ 181 (241)
+|..|... .-|.. ..++-++.+|+|+|||||.+++..+-..+. .|+|+|+++++++.+++|+.+ ...+++|++
T Consensus 23 QY~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lGa~--~V~~vdiD~~a~ei~r~N~~~-l~g~v~f~~ 99 (198)
T COG2263 23 QYRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLGAS--RVLAVDIDPEALEIARANAEE-LLGDVEFVV 99 (198)
T ss_pred ecCCChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcCCc--EEEEEecCHHHHHHHHHHHHh-hCCceEEEE
Confidence 55555442 23332 445556778999999999999999887765 899999999999999999988 445899999
Q ss_pred ccccchHHhhccCCCCcEeEEEEeCC
Q 026219 182 ANASVSFKQLVSSYPGPLMLVSILCP 207 (241)
Q Consensus 182 ~D~~~~~~~~~~~~~~~~d~V~~~~~ 207 (241)
+|+.+ +.+.+|.|+.|.|
T Consensus 100 ~dv~~--------~~~~~dtvimNPP 117 (198)
T COG2263 100 ADVSD--------FRGKFDTVIMNPP 117 (198)
T ss_pred cchhh--------cCCccceEEECCC
Confidence 99986 2567787777754
No 134
>PHA03411 putative methyltransferase; Provisional
Probab=99.24 E-value=7.3e-11 Score=102.89 Aligned_cols=105 Identities=11% Similarity=0.169 Sum_probs=78.1
Q ss_pred CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEE
Q 026219 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSI 204 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~ 204 (241)
..+|||+|||+|.++..++++.+. .+|+|+|+|+.|++.++++. ++++++++|+.+. . .+..||.|+.
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~-~~V~gVDisp~al~~Ar~n~-----~~v~~v~~D~~e~----~--~~~kFDlIIs 132 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKP-EKIVCVELNPEFARIGKRLL-----PEAEWITSDVFEF----E--SNEKFDVVIS 132 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHhC-----cCCEEEECchhhh----c--ccCCCcEEEE
Confidence 578999999999999999888766 68999999999999998753 4789999999762 1 2467999988
Q ss_pred eCCCCchh--hhhh--hc-------cc-chHHHHHHHHhccccCCEEEc
Q 026219 205 LCPDPHFK--KKHH--KR-------RV-VQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 205 ~~~~~~~~--~~~~--~~-------r~-~~~~ll~~l~r~LkpGG~l~~ 241 (241)
+.|-.+.. +... .. .. ...++++....+|+|+|.+++
T Consensus 133 NPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~ 181 (279)
T PHA03411 133 NPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGF 181 (279)
T ss_pred cCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEE
Confidence 76542211 1110 01 11 146889999999999998764
No 135
>PRK03612 spermidine synthase; Provisional
Probab=99.24 E-value=5.9e-11 Score=112.88 Aligned_cols=111 Identities=12% Similarity=0.124 Sum_probs=85.2
Q ss_pred CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHH--HHHh-----CCCCEEEEEccccchHHhhccCC
Q 026219 123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFW--VQEL-----ALSNIHFLFANASVSFKQLVSSY 195 (241)
Q Consensus 123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~--~~~~-----~l~ni~~~~~D~~~~~~~~~~~~ 195 (241)
++.++|||||||+|..+..+++..+. .+++++|+++++++.++++ .... ..++++++.+|+.+.+.. .
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v-~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~----~ 370 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDV-EQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRK----L 370 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCc-CeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHh----C
Confidence 34678999999999999999875333 5899999999999999983 2221 125799999999875432 2
Q ss_pred CCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 196 PGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 196 ~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
+++||.|++..++|+... ..+...+++++.+.+.|||||.+++
T Consensus 371 ~~~fDvIi~D~~~~~~~~---~~~L~t~ef~~~~~~~L~pgG~lv~ 413 (521)
T PRK03612 371 AEKFDVIIVDLPDPSNPA---LGKLYSVEFYRLLKRRLAPDGLLVV 413 (521)
T ss_pred CCCCCEEEEeCCCCCCcc---hhccchHHHHHHHHHhcCCCeEEEE
Confidence 578999999988764221 1235567899999999999999874
No 136
>PLN02672 methionine S-methyltransferase
Probab=99.22 E-value=1e-10 Score=118.14 Aligned_cols=112 Identities=20% Similarity=0.169 Sum_probs=84.4
Q ss_pred CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC----------------CCEEEEEccccchH
Q 026219 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL----------------SNIHFLFANASVSF 188 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l----------------~ni~~~~~D~~~~~ 188 (241)
+.+|||+|||+|.+++.++++++. .+|+|+|+|+++++.|++|++.+++ .+++++++|..+.+
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~-~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~ 197 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLP-SKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC 197 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence 358999999999999999999987 7999999999999999999987643 36999999997632
Q ss_pred HhhccCCCCcEeEEEEeCCC---Cchhh-----hh----------------------hhcccchHHHHHHHHhccccCCE
Q 026219 189 KQLVSSYPGPLMLVSILCPD---PHFKK-----KH----------------------HKRRVVQKPLVDSIIDYLMPGGK 238 (241)
Q Consensus 189 ~~~~~~~~~~~d~V~~~~~~---~~~~~-----~~----------------------~~~r~~~~~ll~~l~r~LkpGG~ 238 (241)
......||+|+.|.|- ...+. .. .....+++.+++++.++|+|||.
T Consensus 198 ----~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~ 273 (1082)
T PLN02672 198 ----RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGI 273 (1082)
T ss_pred ----cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCE
Confidence 1112369998877652 00000 00 11223558899999999999999
Q ss_pred EEc
Q 026219 239 VYF 241 (241)
Q Consensus 239 l~~ 241 (241)
+++
T Consensus 274 l~l 276 (1082)
T PLN02672 274 MIF 276 (1082)
T ss_pred EEE
Confidence 875
No 137
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.20 E-value=1.9e-10 Score=93.62 Aligned_cols=97 Identities=15% Similarity=0.131 Sum_probs=70.7
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS 203 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~ 203 (241)
++.+|||||||+|.++..++++ . .+++|+|+++.+++.+++++.. .+|++++++|+.+. ...+..+|.|+
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~--~-~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~-----~~~~~~~d~vi 82 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLER--A-ARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKF-----DLPKLQPYKVV 82 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhc--C-CeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcC-----CccccCCCEEE
Confidence 4578999999999999999998 4 5799999999999999988753 35899999999862 22234578887
Q ss_pred EeCCCCchhhhhhhcccchHHHHHHHHhc--cccCCEEEc
Q 026219 204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDY--LMPGGKVYF 241 (241)
Q Consensus 204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~--LkpGG~l~~ 241 (241)
.+.|-.. ...++..+.+. +.++|.+++
T Consensus 83 ~n~Py~~-----------~~~~i~~~l~~~~~~~~~~l~~ 111 (169)
T smart00650 83 GNLPYNI-----------STPILFKLLEEPPAFRDAVLMV 111 (169)
T ss_pred ECCCccc-----------HHHHHHHHHhcCCCcceEEEEE
Confidence 7755321 12444444432 346777654
No 138
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.19 E-value=1.5e-10 Score=103.55 Aligned_cols=99 Identities=23% Similarity=0.213 Sum_probs=75.7
Q ss_pred CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEE
Q 026219 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSI 204 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~ 204 (241)
+.+|||+|||+|.+++.+++. . .+|+|+|+|+.+++.|+++++.++++|++++.+|+.+.... .++.+|.|++
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~--~-~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~----~~~~~D~Vv~ 246 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATP--G-MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATA----QGEVPDLVLV 246 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhc--C-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHh----cCCCCeEEEE
Confidence 578999999999999999985 3 57999999999999999999999988899999999764321 2356898887
Q ss_pred eCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 205 LCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 205 ~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
+.|-. .....+++.+.+ ++|++.+|+
T Consensus 247 dPPr~----------G~~~~~~~~l~~-~~~~~ivyv 272 (315)
T PRK03522 247 NPPRR----------GIGKELCDYLSQ-MAPRFILYS 272 (315)
T ss_pred CCCCC----------CccHHHHHHHHH-cCCCeEEEE
Confidence 74311 112344444443 678887764
No 139
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.19 E-value=2e-10 Score=106.86 Aligned_cols=103 Identities=21% Similarity=0.262 Sum_probs=79.9
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS 203 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~ 203 (241)
++.+|||+|||+|.+++.+++.. ..|+|+|+++.+++.|++|++.+++.|++++.+|+.+.++... ..+.++|.|+
T Consensus 292 ~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~-~~~~~~D~vi 367 (431)
T TIGR00479 292 GEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQP-WAGQIPDVLL 367 (431)
T ss_pred CCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHH-hcCCCCCEEE
Confidence 35789999999999999999874 3699999999999999999999998899999999976544321 1235689887
Q ss_pred EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
+..|-. -....+++.+.+ |+|+|.+|+
T Consensus 368 ~dPPr~----------G~~~~~l~~l~~-l~~~~ivyv 394 (431)
T TIGR00479 368 LDPPRK----------GCAAEVLRTIIE-LKPERIVYV 394 (431)
T ss_pred ECcCCC----------CCCHHHHHHHHh-cCCCEEEEE
Confidence 765421 112477777665 789888774
No 140
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.18 E-value=2.4e-10 Score=102.11 Aligned_cols=70 Identities=21% Similarity=0.164 Sum_probs=56.7
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhC-----CCCEEEEEccccchHHhhccCCCCc
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELA-----LSNIHFLFANASVSFKQLVSSYPGP 198 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~-----l~ni~~~~~D~~~~~~~~~~~~~~~ 198 (241)
++.+|||||||+|.++..++++ + .+|+|+|+|++|++.|+++.+..+ ..+++|..+|+.+ . ++.
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g-~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~-----l---~~~ 212 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--G-AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES-----L---SGK 212 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--C-CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh-----c---CCC
Confidence 4679999999999999999986 4 579999999999999999987642 2467888888753 1 467
Q ss_pred EeEEEE
Q 026219 199 LMLVSI 204 (241)
Q Consensus 199 ~d~V~~ 204 (241)
||.|+.
T Consensus 213 fD~Vv~ 218 (315)
T PLN02585 213 YDTVTC 218 (315)
T ss_pred cCEEEE
Confidence 887754
No 141
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.16 E-value=9.8e-11 Score=99.84 Aligned_cols=112 Identities=7% Similarity=0.007 Sum_probs=76.3
Q ss_pred hhHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHH------------HhCCCCEEEEEc
Q 026219 115 DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQ------------ELALSNIHFLFA 182 (241)
Q Consensus 115 ~~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~------------~~~l~ni~~~~~ 182 (241)
+|......+++.+||+.|||.|.-+..|+++ + ..|+|+|+|+.+++.+.+... ...-.+++++++
T Consensus 34 ~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~--G-~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~g 110 (226)
T PRK13256 34 KHFSKLNINDSSVCLIPMCGCSIDMLFFLSK--G-VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVA 110 (226)
T ss_pred HHHHhcCCCCCCeEEEeCCCChHHHHHHHhC--C-CcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEc
Confidence 5555444445689999999999999999998 4 569999999999999865210 011136899999
Q ss_pred cccchHHhhccCCCCcEeEEE----EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 183 NASVSFKQLVSSYPGPLMLVS----ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 183 D~~~~~~~~~~~~~~~~d~V~----~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
|+.+.-. .....+.||.|+ +....| ..+ .++++.+.++|+|||.+++
T Consensus 111 D~f~l~~--~~~~~~~fD~VyDra~~~Alpp--~~R--------~~Y~~~l~~lL~pgg~lll 161 (226)
T PRK13256 111 DIFNLPK--IANNLPVFDIWYDRGAYIALPN--DLR--------TNYAKMMLEVCSNNTQILL 161 (226)
T ss_pred cCcCCCc--cccccCCcCeeeeehhHhcCCH--HHH--------HHHHHHHHHHhCCCcEEEE
Confidence 9986311 000114566553 222222 222 4999999999999998763
No 142
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.15 E-value=1.1e-10 Score=96.48 Aligned_cols=90 Identities=12% Similarity=0.179 Sum_probs=69.8
Q ss_pred CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEE
Q 026219 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSI 204 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~ 204 (241)
+.+|||+|||.|.++..|.+. .+ ...+|+|++++.+..|.+ +.+.++++|+.+.+.. ++|.+||.|++
T Consensus 14 gsrVLDLGCGdG~LL~~L~~~-k~-v~g~GvEid~~~v~~cv~-------rGv~Viq~Dld~gL~~---f~d~sFD~VIl 81 (193)
T PF07021_consen 14 GSRVLDLGCGDGELLAYLKDE-KQ-VDGYGVEIDPDNVAACVA-------RGVSVIQGDLDEGLAD---FPDQSFDYVIL 81 (193)
T ss_pred CCEEEecCCCchHHHHHHHHh-cC-CeEEEEecCHHHHHHHHH-------cCCCEEECCHHHhHhh---CCCCCccEEeh
Confidence 799999999999999999886 45 789999999999888755 2467999999875443 35899999987
Q ss_pred eCCCCchhhhhhhcccchHHHHHHHHhccc
Q 026219 205 LCPDPHFKKKHHKRRVVQKPLVDSIIDYLM 234 (241)
Q Consensus 205 ~~~~~~~~~~~~~~r~~~~~ll~~l~r~Lk 234 (241)
.-.-.....+ +.+|+++.|+-|
T Consensus 82 sqtLQ~~~~P--------~~vL~EmlRVgr 103 (193)
T PF07021_consen 82 SQTLQAVRRP--------DEVLEEMLRVGR 103 (193)
T ss_pred HhHHHhHhHH--------HHHHHHHHHhcC
Confidence 7544333333 488888877633
No 143
>PHA03412 putative methyltransferase; Provisional
Probab=99.15 E-value=2.5e-10 Score=97.48 Aligned_cols=103 Identities=12% Similarity=0.099 Sum_probs=76.4
Q ss_pred CCcEEEEcCCccHHHHHHHHHCC---CCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeE
Q 026219 125 LPLMVDIGSGSGRFLIWLARRNP---DSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLML 201 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~p---~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~ 201 (241)
+.+|||+|||+|.+++.++++.+ . .+|+|+|+++.+++.|+++. .++.++.+|+... . .+.+||.
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~-~~V~aVEID~~Al~~Ar~n~-----~~~~~~~~D~~~~-----~-~~~~FDl 117 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKP-REIVCVELNHTYYKLGKRIV-----PEATWINADALTT-----E-FDTLFDM 117 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCC-cEEEEEECCHHHHHHHHhhc-----cCCEEEEcchhcc-----c-ccCCccE
Confidence 57999999999999999998753 4 68999999999999998754 4688999999751 1 2568999
Q ss_pred EEEeCCCCchhhh----hhhcccchHHHHHHHHhccccCCEE
Q 026219 202 VSILCPDPHFKKK----HHKRRVVQKPLVDSIIDYLMPGGKV 239 (241)
Q Consensus 202 V~~~~~~~~~~~~----~~~~r~~~~~ll~~l~r~LkpGG~l 239 (241)
|+.|.|--..+.+ .+....+...+++.+.+++++|+.|
T Consensus 118 IIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~I 159 (241)
T PHA03412 118 AISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFI 159 (241)
T ss_pred EEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEE
Confidence 9988653211111 1122345678999999977777753
No 144
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.13 E-value=6.9e-11 Score=100.22 Aligned_cols=98 Identities=13% Similarity=0.122 Sum_probs=67.0
Q ss_pred CcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCCCcEeEEEE
Q 026219 126 PLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYPGPLMLVSI 204 (241)
Q Consensus 126 ~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~ 204 (241)
..++|+|||+|..++.++..+.+ |+|+|+|+.|++.|++.....-. ....+...+..+ +. ..+.++|+|+.
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k~---VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~----L~-g~e~SVDlI~~ 106 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHYKE---VIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVD----LL-GGEESVDLITA 106 (261)
T ss_pred ceEEEeccCCCcchHHHHHhhhh---heeecCCHHHHHHhhcCCCcccccCCcccccccccc----cc-CCCcceeeehh
Confidence 38999999999888888888655 99999999999998763211100 011222222222 12 23789999976
Q ss_pred eCCCCchhhhhhhcccchHHHHHHHHhccccCC-EEE
Q 026219 205 LCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGG-KVY 240 (241)
Q Consensus 205 ~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG-~l~ 240 (241)
--.-+|+.. +.+.++++|+||+.| .+.
T Consensus 107 Aqa~HWFdl---------e~fy~~~~rvLRk~Gg~ia 134 (261)
T KOG3010|consen 107 AQAVHWFDL---------ERFYKEAYRVLRKDGGLIA 134 (261)
T ss_pred hhhHHhhch---------HHHHHHHHHHcCCCCCEEE
Confidence 444456644 599999999998777 543
No 145
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.12 E-value=5.2e-10 Score=102.37 Aligned_cols=99 Identities=24% Similarity=0.250 Sum_probs=77.7
Q ss_pred CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEE
Q 026219 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSI 204 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~ 204 (241)
+.+|||+|||+|.+++.++.. . ..|+|||+++.+++.|++|++.++++|++++.+|+.+.... ....+|.|++
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~--~-~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~----~~~~~D~vi~ 306 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGP--D-TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATA----QMSAPELVLV 306 (374)
T ss_pred CCEEEEccCCccHHHHHHhhc--C-CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHh----cCCCCCEEEE
Confidence 578999999999999999975 3 47999999999999999999999988999999999764322 1245898877
Q ss_pred eCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 205 LCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 205 ~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
+.|-. -....+++.+.+ ++|++.+|+
T Consensus 307 DPPr~----------G~~~~~l~~l~~-~~p~~ivyv 332 (374)
T TIGR02085 307 NPPRR----------GIGKELCDYLSQ-MAPKFILYS 332 (374)
T ss_pred CCCCC----------CCcHHHHHHHHh-cCCCeEEEE
Confidence 74421 223467777764 799998875
No 146
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.11 E-value=9.4e-10 Score=96.71 Aligned_cols=111 Identities=16% Similarity=0.224 Sum_probs=71.8
Q ss_pred hhHHH---hcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCC-EEEEEccccchHHh
Q 026219 115 DWSEV---YKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IHFLFANASVSFKQ 190 (241)
Q Consensus 115 ~~~~~---~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~n-i~~~~~D~~~~~~~ 190 (241)
+|.++ +.+-++.+|||||||+|.++..++++.+. .|+|||.++...-..+-..+-.|.++ +..+-.-+++
T Consensus 103 KW~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~--~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~---- 176 (315)
T PF08003_consen 103 KWDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAK--SVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVED---- 176 (315)
T ss_pred hHHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCC--EEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhh----
Confidence 55543 33457899999999999999999999776 79999999886555433222234333 2333222322
Q ss_pred hccCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 191 LVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 191 ~~~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
++. .+.||.|+..-..-|..++ -..|+++...|+|||.+++
T Consensus 177 -Lp~-~~~FDtVF~MGVLYHrr~P--------l~~L~~Lk~~L~~gGeLvL 217 (315)
T PF08003_consen 177 -LPN-LGAFDTVFSMGVLYHRRSP--------LDHLKQLKDSLRPGGELVL 217 (315)
T ss_pred -ccc-cCCcCEEEEeeehhccCCH--------HHHHHHHHHhhCCCCEEEE
Confidence 222 4678877542211111111 3899999999999999985
No 147
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.11 E-value=4.7e-10 Score=94.05 Aligned_cols=99 Identities=16% Similarity=0.262 Sum_probs=76.3
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCC-EEEEEccccchHHhhccCCCCcEeEE
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IHFLFANASVSFKQLVSSYPGPLMLV 202 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~n-i~~~~~D~~~~~~~~~~~~~~~~d~V 202 (241)
++.+|+|+.||.|.+++.+|+..+. ..|+++|++|++++..+++++.+++++ +..+.+|+.+.. . ...+|.|
T Consensus 101 ~~e~VlD~faGIG~f~l~~ak~~~~-~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~----~--~~~~drv 173 (200)
T PF02475_consen 101 PGEVVLDMFAGIGPFSLPIAKHGKA-KRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFL----P--EGKFDRV 173 (200)
T ss_dssp TT-EEEETT-TTTTTHHHHHHHT-S-SEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---------TT-EEEE
T ss_pred cceEEEEccCCccHHHHHHhhhcCc-cEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhc----C--ccccCEE
Confidence 4789999999999999999996656 789999999999999999999999864 899999998732 1 5789999
Q ss_pred EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
+++.|..- ..+|..+.+++++||.+.+
T Consensus 174 im~lp~~~------------~~fl~~~~~~~~~~g~ihy 200 (200)
T PF02475_consen 174 IMNLPESS------------LEFLDAALSLLKEGGIIHY 200 (200)
T ss_dssp EE--TSSG------------GGGHHHHHHHEEEEEEEEE
T ss_pred EECChHHH------------HHHHHHHHHHhcCCcEEEC
Confidence 98876532 2789999999999998864
No 148
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.09 E-value=8.3e-10 Score=95.26 Aligned_cols=116 Identities=18% Similarity=0.141 Sum_probs=81.3
Q ss_pred CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCCCcEeEEE
Q 026219 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYPGPLMLVS 203 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~~d~V~ 203 (241)
...|||+|||+|..++.++...|. +.|++||.|+.++..|.+|++++++. .+.+++-+.+.-.....+..++.+|.++
T Consensus 149 ~~~ildlgtGSGaIslsll~~L~~-~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllv 227 (328)
T KOG2904|consen 149 HTHILDLGTGSGAISLSLLHGLPQ-CTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLV 227 (328)
T ss_pred cceEEEecCCccHHHHHHHhcCCC-ceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEe
Confidence 357999999999999999999997 99999999999999999999999885 4777754433210000112357788777
Q ss_pred EeCCCC--------chhhh----------hhhcccchHHHHHHHHhccccCCEEEc
Q 026219 204 ILCPDP--------HFKKK----------HHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 204 ~~~~~~--------~~~~~----------~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
.|.|-- .+.-+ ..+...+...++.-+.|.|+|||.++|
T Consensus 228 sNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~l 283 (328)
T KOG2904|consen 228 SNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQL 283 (328)
T ss_pred cCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEE
Confidence 664320 00000 111223556777888999999999875
No 149
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.08 E-value=4.3e-10 Score=93.54 Aligned_cols=92 Identities=14% Similarity=0.165 Sum_probs=67.8
Q ss_pred CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEE
Q 026219 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSI 204 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~ 204 (241)
+.+|||||||+|.++..+++.. . ..++|+|+|+++++.+++ .+++++.+|+.+.++ +..++++|.|+.
T Consensus 14 ~~~iLDiGcG~G~~~~~l~~~~-~-~~~~giD~s~~~i~~a~~-------~~~~~~~~d~~~~l~---~~~~~sfD~Vi~ 81 (194)
T TIGR02081 14 GSRVLDLGCGDGELLALLRDEK-Q-VRGYGIEIDQDGVLACVA-------RGVNVIQGDLDEGLE---AFPDKSFDYVIL 81 (194)
T ss_pred CCEEEEeCCCCCHHHHHHHhcc-C-CcEEEEeCCHHHHHHHHH-------cCCeEEEEEhhhccc---ccCCCCcCEEEE
Confidence 5789999999999999988764 3 578999999999998854 257888888864221 123578999987
Q ss_pred eCCCCchhhhhhhcccchHHHHHHHHhccccC
Q 026219 205 LCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPG 236 (241)
Q Consensus 205 ~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpG 236 (241)
+..-.|..+. ..+++++.+.++++
T Consensus 82 ~~~l~~~~d~--------~~~l~e~~r~~~~~ 105 (194)
T TIGR02081 82 SQTLQATRNP--------EEILDEMLRVGRHA 105 (194)
T ss_pred hhHhHcCcCH--------HHHHHHHHHhCCeE
Confidence 6544343332 48889988887753
No 150
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=8.4e-10 Score=89.99 Aligned_cols=111 Identities=19% Similarity=0.251 Sum_probs=85.9
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS 203 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~ 203 (241)
....++|||||+|..+..|++...+.....++|++|.+++..++.++.++. +++.++.|....+ . ++++|+++
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~-~~~~V~tdl~~~l----~--~~~VDvLv 115 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV-HIDVVRTDLLSGL----R--NESVDVLV 115 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC-ccceeehhHHhhh----c--cCCccEEE
Confidence 357899999999999999998764437899999999999999999887765 6889999987632 2 38899888
Q ss_pred EeCCC-Cchhh---------hh---hhcccchHHHHHHHHhccccCCEEEc
Q 026219 204 ILCPD-PHFKK---------KH---HKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 204 ~~~~~-~~~~~---------~~---~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
++-|- |.... .. ...|.+.+.++..+-.+|.|.|.+|+
T Consensus 116 fNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Yl 166 (209)
T KOG3191|consen 116 FNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYL 166 (209)
T ss_pred ECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEe
Confidence 77542 11111 11 34566778999999999999999985
No 151
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.06 E-value=1.4e-09 Score=89.79 Aligned_cols=109 Identities=17% Similarity=0.144 Sum_probs=78.7
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcE---------EEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhcc
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGN---------YLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVS 193 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~---------v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~ 193 (241)
++..|||--||+|.+++..+....+ .. ++|+|+++++++.|++|++..++. .+.+.+.|+.+ ++
T Consensus 28 ~~~~vlDP~CGsGtiliEaa~~~~~-~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~-----l~ 101 (179)
T PF01170_consen 28 PGDVVLDPFCGSGTILIEAALMGAN-IPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARE-----LP 101 (179)
T ss_dssp TTS-EEETT-TTSHHHHHHHHHHTT-TSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGG-----GG
T ss_pred CCCEEeecCCCCCHHHHHHHHHhhC-cccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhh-----cc
Confidence 4679999999999999998877666 44 899999999999999999998885 48999999986 22
Q ss_pred CCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCE
Q 026219 194 SYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGK 238 (241)
Q Consensus 194 ~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~ 238 (241)
..++++|.|+.+.|--..-........++..+++++.++|++...
T Consensus 102 ~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v 146 (179)
T PF01170_consen 102 LPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAV 146 (179)
T ss_dssp GTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEE
T ss_pred cccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEE
Confidence 346789999988753211111122345778999999999999433
No 152
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.05 E-value=7.5e-10 Score=99.58 Aligned_cols=112 Identities=15% Similarity=0.184 Sum_probs=75.3
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHh-------CC---CCEEEEEccccch-HHhhc
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQEL-------AL---SNIHFLFANASVS-FKQLV 192 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~-------~l---~ni~~~~~D~~~~-~~~~~ 192 (241)
++.+|||||||-|.-+........ ..++|+||++..|+.|+++.++. .. -...++.+|.... +...+
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i--~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKI--KHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhcCC--CEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 478999999999998888877654 48999999999999999998431 11 1356788887542 22223
Q ss_pred cCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 193 SSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 193 ~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
......||+|.+.|..++.-.. ....+.+|+++...|+|||.|+.
T Consensus 140 ~~~~~~FDvVScQFalHY~Fes----e~~ar~~l~Nvs~~Lk~GG~FIg 184 (331)
T PF03291_consen 140 PPRSRKFDVVSCQFALHYAFES----EEKARQFLKNVSSLLKPGGYFIG 184 (331)
T ss_dssp SSTTS-EEEEEEES-GGGGGSS----HHHHHHHHHHHHHTEEEEEEEEE
T ss_pred cccCCCcceeehHHHHHHhcCC----HHHHHHHHHHHHHhcCCCCEEEE
Confidence 2123589999988865432111 11225899999999999999873
No 153
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.05 E-value=9.2e-10 Score=93.49 Aligned_cols=56 Identities=23% Similarity=0.278 Sum_probs=46.9
Q ss_pred hhHHHhcCC--CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHH
Q 026219 115 DWSEVYKNP--TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQE 171 (241)
Q Consensus 115 ~~~~~~~~~--~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~ 171 (241)
.|...+.++ ....+|||||-+|.++..+++.+.. ..|+|+||++..++.|+++++.
T Consensus 47 ~rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~-r~iLGvDID~~LI~~Ark~~r~ 104 (288)
T KOG2899|consen 47 PRLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGP-RRILGVDIDPVLIQRARKEIRF 104 (288)
T ss_pred hhhhhccccccCcceeEeccCCcchhHHHHHHhhcc-ceeeEeeccHHHHHHHHHhccc
Confidence 455554432 3578999999999999999999987 7899999999999999998763
No 154
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.05 E-value=2.2e-09 Score=97.77 Aligned_cols=101 Identities=15% Similarity=0.171 Sum_probs=75.7
Q ss_pred CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCC---------
Q 026219 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSY--------- 195 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~--------- 195 (241)
+.++||++||+|.+++.+++... .|+|||+++.+++.|++|++.++++|++++.+|+.+.++.+....
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~~~---~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~ 283 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARNFR---RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGID 283 (362)
T ss_pred CCeEEEEeccccHHHHHHHhhCC---EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhccccccccccc
Confidence 35799999999999999998753 699999999999999999999998899999999987655432100
Q ss_pred --CCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 196 --PGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 196 --~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
...+|.|++..|-. -..+.+++.+.+ |++.+|+
T Consensus 284 ~~~~~~D~v~lDPPR~----------G~~~~~l~~l~~---~~~ivyv 318 (362)
T PRK05031 284 LKSYNFSTIFVDPPRA----------GLDDETLKLVQA---YERILYI 318 (362)
T ss_pred ccCCCCCEEEECCCCC----------CCcHHHHHHHHc---cCCEEEE
Confidence 12478777654321 123466666654 6777774
No 155
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.05 E-value=3.2e-09 Score=88.35 Aligned_cols=106 Identities=15% Similarity=0.002 Sum_probs=76.0
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCCCcEeEE
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYPGPLMLV 202 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~~d~V 202 (241)
.+.++||++||+|.+++.++.+... .|+++|+++.+++.+++|++.++.. +++++.+|+.+.+..... ....+|+|
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~--~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~-~~~~~dvv 125 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAK--VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAK-KPTFDNVI 125 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCC--EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhc-cCCCceEE
Confidence 3688999999999999999998654 7999999999999999999998875 699999999765433211 11225655
Q ss_pred EEeCCCCchhhhhhhcccchHHHHHHHH--hccccCCEEEc
Q 026219 203 SILCPDPHFKKKHHKRRVVQKPLVDSII--DYLMPGGKVYF 241 (241)
Q Consensus 203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~--r~LkpGG~l~~ 241 (241)
+...| ... .....+++.+. .+|+++|.+++
T Consensus 126 ~~DPP--y~~-------~~~~~~l~~l~~~~~l~~~~iiv~ 157 (189)
T TIGR00095 126 YLDPP--FFN-------GALQALLELCENNWILEDTVLIVV 157 (189)
T ss_pred EECcC--CCC-------CcHHHHHHHHHHCCCCCCCeEEEE
Confidence 44322 111 11235555553 47899998864
No 156
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.05 E-value=5.2e-10 Score=90.52 Aligned_cols=76 Identities=14% Similarity=0.122 Sum_probs=59.3
Q ss_pred EEEeCCHHHHHHHHHHHHHhC---CCCEEEEEccccchHHhhccCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHH
Q 026219 153 LGLEIRQKLVKRAEFWVQELA---LSNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSI 229 (241)
Q Consensus 153 ~giDis~~~v~~a~~~~~~~~---l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l 229 (241)
+|+|+|++|++.|+++.+..+ ..+++++++|+.+ ++..+++||.|++.+...+..+. ..+++++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~-----lp~~~~~fD~v~~~~~l~~~~d~--------~~~l~ei 67 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAID-----LPFDDCEFDAVTMGYGLRNVVDR--------LRAMKEM 67 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhh-----CCCCCCCeeEEEecchhhcCCCH--------HHHHHHH
Confidence 489999999999988765322 3579999999986 34457789999877655444333 4999999
Q ss_pred HhccccCCEEEc
Q 026219 230 IDYLMPGGKVYF 241 (241)
Q Consensus 230 ~r~LkpGG~l~~ 241 (241)
+|+|||||.++|
T Consensus 68 ~rvLkpGG~l~i 79 (160)
T PLN02232 68 YRVLKPGSRVSI 79 (160)
T ss_pred HHHcCcCeEEEE
Confidence 999999999874
No 157
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.05 E-value=5.3e-10 Score=93.77 Aligned_cols=102 Identities=21% Similarity=0.330 Sum_probs=72.0
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS 203 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~ 203 (241)
...-|||||||+|..+..+... + -.++|+|||+.|++.|.+. + +. -.++.+|.-+. +++.++.||.++
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~--G-h~wiGvDiSpsML~~a~~~--e--~e-gdlil~DMG~G----lpfrpGtFDg~I 117 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDS--G-HQWIGVDISPSMLEQAVER--E--LE-GDLILCDMGEG----LPFRPGTFDGVI 117 (270)
T ss_pred CCcEEEEeccCCCcchheeccC--C-ceEEeecCCHHHHHHHHHh--h--hh-cCeeeeecCCC----CCCCCCccceEE
Confidence 4788999999999999888775 3 4799999999999999862 1 11 35778888764 445678888664
Q ss_pred Ee-------CCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 204 IL-------CPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 204 ~~-------~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
.. ..++..+.+ ++|+ ..|+..++.+|++|++.++
T Consensus 118 SISAvQWLcnA~~s~~~P--~~Rl--~~FF~tLy~~l~rg~raV~ 158 (270)
T KOG1541|consen 118 SISAVQWLCNADKSLHVP--KKRL--LRFFGTLYSCLKRGARAVL 158 (270)
T ss_pred EeeeeeeecccCccccCh--HHHH--HHHhhhhhhhhccCceeEE
Confidence 32 222211111 1122 5889999999999998654
No 158
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.04 E-value=2.7e-09 Score=96.98 Aligned_cols=100 Identities=14% Similarity=0.167 Sum_probs=74.7
Q ss_pred CcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccC--C--------
Q 026219 126 PLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSS--Y-------- 195 (241)
Q Consensus 126 ~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~--~-------- 195 (241)
.+|||+|||+|.+++.+++... .|+|||+++++++.|++|++.++++|++++.+|+.+.++..... .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~---~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 275 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFR---RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDL 275 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccc
Confidence 4799999999999999998853 69999999999999999999999989999999998765432110 0
Q ss_pred -CCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 196 -PGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 196 -~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
...+|.|++..|-. -....+++.+.+ |++.+|+
T Consensus 276 ~~~~~d~v~lDPPR~----------G~~~~~l~~l~~---~~~ivYv 309 (353)
T TIGR02143 276 KSYNCSTIFVDPPRA----------GLDPDTCKLVQA---YERILYI 309 (353)
T ss_pred ccCCCCEEEECCCCC----------CCcHHHHHHHHc---CCcEEEE
Confidence 11268777664421 122466666654 7888875
No 159
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=99.04 E-value=2e-09 Score=100.90 Aligned_cols=113 Identities=18% Similarity=0.191 Sum_probs=87.7
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS 203 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~ 203 (241)
++.+|||+|+|.|.-+..++....+.+.++++|+++..++..++++++.|+.|+.+...|+.... . ..++.||.|+
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~-~---~~~~~fD~IL 188 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFG-A---ALPETFDAIL 188 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhh-h---hchhhcCeEE
Confidence 57899999999999999999987654799999999999999999999999999999999987521 1 2346789888
Q ss_pred EeCCCC----chhhhhhh----------cccchHHHHHHHHhccccCCEEE
Q 026219 204 ILCPDP----HFKKKHHK----------RRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 204 ~~~~~~----~~~~~~~~----------~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
+.-|-. +.+++... --.++.++|+.+.++|||||+|+
T Consensus 189 vDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LV 239 (470)
T PRK11933 189 LDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLV 239 (470)
T ss_pred EcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEE
Confidence 765421 11111111 11267899999999999999885
No 160
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=99.04 E-value=1.9e-09 Score=98.80 Aligned_cols=99 Identities=19% Similarity=0.085 Sum_probs=80.6
Q ss_pred CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEE
Q 026219 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSI 204 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~ 204 (241)
+.+|||++||+|..++.++...+. ..|+++|+++++++.+++|++.+++++++++.+|+.+.+.. ...+|.|++
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~-~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~-----~~~fD~V~l 131 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGV-EKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE-----ERKFDVVDI 131 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh-----cCCCCEEEE
Confidence 358999999999999999987664 58999999999999999999999998889999999764321 346898887
Q ss_pred eCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 205 LCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 205 ~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
..+.. + ..+++...+.+++||.+++
T Consensus 132 DP~Gs-~-----------~~~l~~al~~~~~~gilyv 156 (382)
T PRK04338 132 DPFGS-P-----------APFLDSAIRSVKRGGLLCV 156 (382)
T ss_pred CCCCC-c-----------HHHHHHHHHHhcCCCEEEE
Confidence 53211 1 3788887788999999985
No 161
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.01 E-value=5.4e-09 Score=88.27 Aligned_cols=106 Identities=17% Similarity=0.231 Sum_probs=90.7
Q ss_pred CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccC-CCCcEeEE
Q 026219 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSS-YPGPLMLV 202 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~-~~~~~d~V 202 (241)
.+++||||.=||..++..|...|++++|+++|++++..+++.+..+..|.. .|+++++++.+.++.+... ..+.||.+
T Consensus 74 ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfa 153 (237)
T KOG1663|consen 74 AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFA 153 (237)
T ss_pred CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeEE
Confidence 478999999999999999999998899999999999999999999888884 6999999999998887664 34779988
Q ss_pred EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
++.. | |..+ ..+.+++.++||+||.|++
T Consensus 154 FvDa---d-K~nY-------~~y~e~~l~Llr~GGvi~~ 181 (237)
T KOG1663|consen 154 FVDA---D-KDNY-------SNYYERLLRLLRVGGVIVV 181 (237)
T ss_pred EEcc---c-hHHH-------HHHHHHHHhhcccccEEEE
Confidence 7652 2 2222 4899999999999999875
No 162
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.98 E-value=3.1e-09 Score=94.69 Aligned_cols=100 Identities=14% Similarity=0.201 Sum_probs=75.7
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCC-EEEEEccccchHHhhccCCCCcEeEE
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IHFLFANASVSFKQLVSSYPGPLMLV 202 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~n-i~~~~~D~~~~~~~~~~~~~~~~d~V 202 (241)
++++|||+|||+|.+.+..|+.+.. +|+|||-|.-+ +.|++.++.+++.+ ++++.+.+++ +..|...+|.+
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA~--~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEd-----i~LP~eKVDiI 131 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGAR--KVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVED-----IELPVEKVDII 131 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCcc--eEEEEechHHH-HHHHHHHHhcCccceEEEeecceEE-----EecCccceeEE
Confidence 3589999999999999999998754 89999998855 99999999999976 8999999987 33345788877
Q ss_pred EEeCCCCchhhhhhhcccch----HHHHHHHHhccccCCEEE
Q 026219 203 SILCPDPHFKKKHHKRRVVQ----KPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 203 ~~~~~~~~~~~~~~~~r~~~----~~ll~~l~r~LkpGG~l~ 240 (241)
+.-+ +- .-+++ ...|-.=-++|+|||.++
T Consensus 132 vSEW----MG-----y~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 132 VSEW----MG-----YFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred eehh----hh-----HHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 6432 20 00112 233444468999999875
No 163
>PLN02823 spermine synthase
Probab=98.98 E-value=4.3e-09 Score=94.84 Aligned_cols=112 Identities=14% Similarity=0.136 Sum_probs=85.8
Q ss_pred CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhC----CCCEEEEEccccchHHhhccCCCCc
Q 026219 123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELA----LSNIHFLFANASVSFKQLVSSYPGP 198 (241)
Q Consensus 123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~----l~ni~~~~~D~~~~~~~~~~~~~~~ 198 (241)
++..+||.||+|.|..+..+.+..+. .+++.||+++++++.|++.....+ -++++++.+|+.+++.. .+..
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~-~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~----~~~~ 176 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTV-EKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEK----RDEK 176 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCC-CeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhh----CCCC
Confidence 34578999999999999998886555 689999999999999999875321 25799999999876532 3578
Q ss_pred EeEEEEeCCCCchhhhhhhcccchHHHHH-HHHhccccCCEEEc
Q 026219 199 LMLVSILCPDPHFKKKHHKRRVVQKPLVD-SIIDYLMPGGKVYF 241 (241)
Q Consensus 199 ~d~V~~~~~~~~~~~~~~~~r~~~~~ll~-~l~r~LkpGG~l~~ 241 (241)
+|+|++..++|+.... -..+....+++ .+.+.|+|||.+++
T Consensus 177 yDvIi~D~~dp~~~~~--~~~Lyt~eF~~~~~~~~L~p~Gvlv~ 218 (336)
T PLN02823 177 FDVIIGDLADPVEGGP--CYQLYTKSFYERIVKPKLNPGGIFVT 218 (336)
T ss_pred ccEEEecCCCccccCc--chhhccHHHHHHHHHHhcCCCcEEEE
Confidence 9999988777642110 01245568998 89999999999863
No 164
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.96 E-value=3.7e-10 Score=95.98 Aligned_cols=112 Identities=15% Similarity=0.219 Sum_probs=75.8
Q ss_pred hhhhHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHH-h-----------CCCCEEEE
Q 026219 113 IPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQE-L-----------ALSNIHFL 180 (241)
Q Consensus 113 ~~~~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~-~-----------~l~ni~~~ 180 (241)
+.+|.+....+.+.+||..|||.|.-+..|+++ + .+|+|+|+|+.+++.+.+.... . ...+|+++
T Consensus 26 L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~--G-~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~ 102 (218)
T PF05724_consen 26 LVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQ--G-HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIY 102 (218)
T ss_dssp HHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHT--T-EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEE
T ss_pred HHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHC--C-CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEE
Confidence 345555544445679999999999999999997 4 6899999999999998543211 0 11357899
Q ss_pred EccccchHHhhccCCCCcEeEEEEe---CCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 181 FANASVSFKQLVSSYPGPLMLVSIL---CPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 181 ~~D~~~~~~~~~~~~~~~~d~V~~~---~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
++|+.+.-+. ..+.||.|+=. ..-| +..+ +++.+.+.++|+|||+++
T Consensus 103 ~gDfF~l~~~----~~g~fD~iyDr~~l~Alp-p~~R--------~~Ya~~l~~ll~p~g~~l 152 (218)
T PF05724_consen 103 CGDFFELPPE----DVGKFDLIYDRTFLCALP-PEMR--------ERYAQQLASLLKPGGRGL 152 (218)
T ss_dssp ES-TTTGGGS----CHHSEEEEEECSSTTTS--GGGH--------HHHHHHHHHCEEEEEEEE
T ss_pred EcccccCChh----hcCCceEEEEecccccCC-HHHH--------HHHHHHHHHHhCCCCcEE
Confidence 9999763111 12568877421 1222 2222 499999999999999943
No 165
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.94 E-value=9.1e-09 Score=88.29 Aligned_cols=96 Identities=20% Similarity=0.292 Sum_probs=73.9
Q ss_pred CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219 123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV 202 (241)
Q Consensus 123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V 202 (241)
....+|||||.|+|.++..+++++|+ .+++..|+ |.+++.+++ .++++++.+|+.+. .|. .|++
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~v~Dl-p~v~~~~~~------~~rv~~~~gd~f~~-------~P~-~D~~ 162 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPN-LRATVFDL-PEVIEQAKE------ADRVEFVPGDFFDP-------LPV-ADVY 162 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTT-SEEEEEE--HHHHCCHHH------TTTEEEEES-TTTC-------CSS-ESEE
T ss_pred cCccEEEeccCcchHHHHHHHHHCCC-Ccceeecc-Hhhhhcccc------ccccccccccHHhh-------hcc-ccce
Confidence 34578999999999999999999999 99999999 888888877 36899999999641 244 8888
Q ss_pred EEeCCC-CchhhhhhhcccchHHHHHHHHhccccC--CEEEc
Q 026219 203 SILCPD-PHFKKKHHKRRVVQKPLVDSIIDYLMPG--GKVYF 241 (241)
Q Consensus 203 ~~~~~~-~~~~~~~~~~r~~~~~ll~~l~r~LkpG--G~l~~ 241 (241)
++...- .|.++. ...+|+++++.|+|| |+|+|
T Consensus 163 ~l~~vLh~~~d~~-------~~~iL~~~~~al~pg~~g~llI 197 (241)
T PF00891_consen 163 LLRHVLHDWSDED-------CVKILRNAAAALKPGKDGRLLI 197 (241)
T ss_dssp EEESSGGGS-HHH-------HHHHHHHHHHHSEECTTEEEEE
T ss_pred eeehhhhhcchHH-------HHHHHHHHHHHhCCCCCCeEEE
Confidence 765432 233332 259999999999999 99886
No 166
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.90 E-value=1.1e-08 Score=91.53 Aligned_cols=83 Identities=14% Similarity=0.183 Sum_probs=64.0
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHh-CCC-CEEEEE-ccccchHHhhccCCCCcEe
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQEL-ALS-NIHFLF-ANASVSFKQLVSSYPGPLM 200 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~-~l~-ni~~~~-~D~~~~~~~~~~~~~~~~d 200 (241)
...++||||||+|.+...++.+.++ ++++|+|+++.+++.|+++++.+ ++. +++++. .|..+.+..+. ..++.||
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~-~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~-~~~~~fD 191 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYG-WRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGII-HKNERFD 191 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCC-CEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhccc-ccCCceE
Confidence 4578999999999998888888777 89999999999999999999998 674 588764 34433222211 1356899
Q ss_pred EEEEeCCC
Q 026219 201 LVSILCPD 208 (241)
Q Consensus 201 ~V~~~~~~ 208 (241)
.|+.+.|-
T Consensus 192 livcNPPf 199 (321)
T PRK11727 192 ATLCNPPF 199 (321)
T ss_pred EEEeCCCC
Confidence 99888653
No 167
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.89 E-value=6.8e-09 Score=86.82 Aligned_cols=105 Identities=19% Similarity=0.311 Sum_probs=81.0
Q ss_pred cEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEE-EEEccccch-HHhh--ccCCCCcEeEE
Q 026219 127 LMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIH-FLFANASVS-FKQL--VSSYPGPLMLV 202 (241)
Q Consensus 127 ~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~-~~~~D~~~~-~~~~--~~~~~~~~d~V 202 (241)
+|||||||||..+..+++.+|+ ....-.|+++......+.++...+++|+. -+..|+.+. .+.. .......+|.|
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~-l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i 106 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPH-LTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAI 106 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCC-CEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCccee
Confidence 5999999999999999999999 89999999999998999999888888853 577788753 1111 01124578877
Q ss_pred EE-e--CCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 203 SI-L--CPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 203 ~~-~--~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
+. + ...||.. .+.+++.+.++|+|||.+++
T Consensus 107 ~~~N~lHI~p~~~---------~~~lf~~a~~~L~~gG~L~~ 139 (204)
T PF06080_consen 107 FCINMLHISPWSA---------VEGLFAGAARLLKPGGLLFL 139 (204)
T ss_pred eehhHHHhcCHHH---------HHHHHHHHHHhCCCCCEEEE
Confidence 53 2 2335542 25999999999999999875
No 168
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.87 E-value=1.9e-09 Score=91.18 Aligned_cols=107 Identities=14% Similarity=0.142 Sum_probs=81.5
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC--CCEEEEEccccchHHhhccCCCCcEeE
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL--SNIHFLFANASVSFKQLVSSYPGPLML 201 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l--~ni~~~~~D~~~~~~~~~~~~~~~~d~ 201 (241)
++.+|||.+.|-|.+++..+++..- +|+.+|.+|+.++.|.-|-=..++ .+++++.+|+.+.+..+ .|.+||.
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~rGA~--~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~---~D~sfDa 208 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALERGAI--HVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDF---DDESFDA 208 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHcCCc--EEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcC---Cccccce
Confidence 5789999999999999999998542 799999999999998654322233 25799999998755442 4788997
Q ss_pred EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
|+...| ..+.+. .+..+.|.++++|+|||||.+|
T Consensus 209 IiHDPP----RfS~Ag-eLYseefY~El~RiLkrgGrlF 242 (287)
T COG2521 209 IIHDPP----RFSLAG-ELYSEEFYRELYRILKRGGRLF 242 (287)
T ss_pred EeeCCC----ccchhh-hHhHHHHHHHHHHHcCcCCcEE
Confidence 664322 112222 5667899999999999999986
No 169
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.86 E-value=1.2e-08 Score=90.06 Aligned_cols=115 Identities=17% Similarity=0.223 Sum_probs=80.8
Q ss_pred HhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-C-----CEEEEEccccch-HHhh
Q 026219 119 VYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-S-----NIHFLFANASVS-FKQL 191 (241)
Q Consensus 119 ~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~-----ni~~~~~D~~~~-~~~~ 191 (241)
.+.+ ....++|+|||-|.-++..-+..-+ .++|+||.+..|+-|+++.+.... . .+.|+.+|.... +...
T Consensus 113 ~y~~-~~~~~~~LgCGKGGDLlKw~kAgI~--~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~ 189 (389)
T KOG1975|consen 113 LYTK-RGDDVLDLGCGKGGDLLKWDKAGIG--EYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDL 189 (389)
T ss_pred HHhc-cccccceeccCCcccHhHhhhhccc--ceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHh
Confidence 3444 4788999999999999988776543 799999999999999998775321 1 368899998642 3344
Q ss_pred ccCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 192 VSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 192 ~~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
++..+.+||+|.+.|..++.-.. ..-.+.+|+++.+.|+|||.++
T Consensus 190 ~e~~dp~fDivScQF~~HYaFet----ee~ar~~l~Nva~~LkpGG~FI 234 (389)
T KOG1975|consen 190 LEFKDPRFDIVSCQFAFHYAFET----EESARIALRNVAKCLKPGGVFI 234 (389)
T ss_pred ccCCCCCcceeeeeeeEeeeecc----HHHHHHHHHHHHhhcCCCcEEE
Confidence 54445559998765533211000 0112588999999999999986
No 170
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.86 E-value=1.7e-08 Score=93.75 Aligned_cols=102 Identities=21% Similarity=0.208 Sum_probs=78.1
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS 203 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~ 203 (241)
.+.+++|+-||.|.+++.+|++. .+|+|+|+++++++.|++|++.+++.|++|+.+|+.+....+. ....+|.|+
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~~~---~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~--~~~~~d~Vv 367 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAKRV---KKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWW--EGYKPDVVV 367 (432)
T ss_pred CCCEEEEeccCCChhhhhhcccC---CEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhcc--ccCCCCEEE
Confidence 35789999999999999999774 4699999999999999999999999999999999988554432 124568777
Q ss_pred EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
+..|=. -.-+.+++.+.+ ++|...+|+
T Consensus 368 vDPPR~----------G~~~~~lk~l~~-~~p~~IvYV 394 (432)
T COG2265 368 VDPPRA----------GADREVLKQLAK-LKPKRIVYV 394 (432)
T ss_pred ECCCCC----------CCCHHHHHHHHh-cCCCcEEEE
Confidence 764422 122467777666 466666654
No 171
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.86 E-value=2.2e-08 Score=88.21 Aligned_cols=119 Identities=18% Similarity=0.224 Sum_probs=83.9
Q ss_pred hhHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC--CEEEEEccccchHHhhc
Q 026219 115 DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS--NIHFLFANASVSFKQLV 192 (241)
Q Consensus 115 ~~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~--ni~~~~~D~~~~~~~~~ 192 (241)
.|...... +.+|||+-|=||.+++..+.... .+|+.||.|..+++.+++|++.++++ +++++..|+.+.+...-
T Consensus 116 ~~v~~~~~--gkrvLnlFsYTGgfsv~Aa~gGA--~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~ 191 (286)
T PF10672_consen 116 KWVRKYAK--GKRVLNLFSYTGGFSVAAAAGGA--KEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLK 191 (286)
T ss_dssp HHHHHHCT--TCEEEEET-TTTHHHHHHHHTTE--SEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHH
T ss_pred HHHHHHcC--CCceEEecCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHh
Confidence 34444443 78999999999999999877543 37999999999999999999999864 79999999988765532
Q ss_pred cCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 193 SSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 193 ~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
. .+.||+|++..|. ..+.+. .-..-+..+++.+.++|+|||.+++
T Consensus 192 ~--~~~fD~IIlDPPs-F~k~~~-~~~~~y~~L~~~a~~ll~~gG~l~~ 236 (286)
T PF10672_consen 192 K--GGRFDLIILDPPS-FAKSKF-DLERDYKKLLRRAMKLLKPGGLLLT 236 (286)
T ss_dssp H--TT-EEEEEE--SS-EESSTC-EHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred c--CCCCCEEEECCCC-CCCCHH-HHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 2 4689999887653 221111 1111345789999999999999864
No 172
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.86 E-value=1.2e-08 Score=91.28 Aligned_cols=108 Identities=19% Similarity=0.258 Sum_probs=84.1
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEc-cccchHHhhccCCCCcEeEE
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFA-NASVSFKQLVSSYPGPLMLV 202 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~-D~~~~~~~~~~~~~~~~d~V 202 (241)
.+..|||==||||.+++...-. + ++++|+|++..|++-|+.|++..+++...+... |+.+ .+..+.++|.|
T Consensus 197 ~G~~vlDPFcGTGgiLiEagl~--G-~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~-----lpl~~~~vdaI 268 (347)
T COG1041 197 RGELVLDPFCGTGGILIEAGLM--G-ARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATN-----LPLRDNSVDAI 268 (347)
T ss_pred cCCEeecCcCCccHHHHhhhhc--C-ceEeecchHHHHHhhhhhhhhhhCcCceeEEEeccccc-----CCCCCCccceE
Confidence 4679999999999999997765 4 689999999999999999999998888777666 9986 33334569988
Q ss_pred EEeCCCCchhhhhhhc---ccchHHHHHHHHhccccCCEEEc
Q 026219 203 SILCPDPHFKKKHHKR---RVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 203 ~~~~~~~~~~~~~~~~---r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
+...|- ......+. ..++.++++.+.++||+||.+.|
T Consensus 269 atDPPY--Grst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf 308 (347)
T COG1041 269 ATDPPY--GRSTKIKGEGLDELYEEALESASEVLKPGGRIVF 308 (347)
T ss_pred EecCCC--CcccccccccHHHHHHHHHHHHHHHhhcCcEEEE
Confidence 876543 22221111 13578999999999999998875
No 173
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.85 E-value=1.2e-08 Score=89.40 Aligned_cols=58 Identities=21% Similarity=0.199 Sum_probs=50.7
Q ss_pred CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccc
Q 026219 123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV 186 (241)
Q Consensus 123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~ 186 (241)
.++.+|||||||+|.++..++++.+ +|+|+|++++|++.++++... ++++++++|+.+
T Consensus 41 ~~~~~VLEiG~G~G~lt~~L~~~~~---~v~avE~d~~~~~~~~~~~~~---~~v~~i~~D~~~ 98 (272)
T PRK00274 41 QPGDNVLEIGPGLGALTEPLLERAA---KVTAVEIDRDLAPILAETFAE---DNLTIIEGDALK 98 (272)
T ss_pred CCcCeEEEeCCCccHHHHHHHHhCC---cEEEEECCHHHHHHHHHhhcc---CceEEEEChhhc
Confidence 3567899999999999999999854 599999999999999887632 589999999986
No 174
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.84 E-value=2.8e-08 Score=82.25 Aligned_cols=107 Identities=16% Similarity=0.163 Sum_probs=78.3
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCC-EEEEEccccchHHhhccCCCCcEeEE
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IHFLFANASVSFKQLVSSYPGPLMLV 202 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~n-i~~~~~D~~~~~~~~~~~~~~~~d~V 202 (241)
++.++||+-||||.+++..+.+... .|+.||.++..+...++|++..+..+ ++++..|+...+..... ....||+|
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~--~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~-~~~~fDiI 118 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAK--SVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAK-KGEKFDII 118 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-S--EEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHH-CTS-EEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcCCC--eEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcc-cCCCceEE
Confidence 4789999999999999998888655 89999999999999999999988764 99999998776654321 35789998
Q ss_pred EEeCCCCchhhhhhhcccchHHHHHHHH--hccccCCEEEc
Q 026219 203 SILCPDPHFKKKHHKRRVVQKPLVDSII--DYLMPGGKVYF 241 (241)
Q Consensus 203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~--r~LkpGG~l~~ 241 (241)
++..|-.. .. ....+++.+. .+|+++|.+++
T Consensus 119 flDPPY~~--~~------~~~~~l~~l~~~~~l~~~~~ii~ 151 (183)
T PF03602_consen 119 FLDPPYAK--GL------YYEELLELLAENNLLNEDGLIII 151 (183)
T ss_dssp EE--STTS--CH------HHHHHHHHHHHTTSEEEEEEEEE
T ss_pred EECCCccc--ch------HHHHHHHHHHHCCCCCCCEEEEE
Confidence 87754321 10 1247777776 89999999875
No 175
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.83 E-value=2.2e-08 Score=88.84 Aligned_cols=75 Identities=16% Similarity=0.199 Sum_probs=61.1
Q ss_pred CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhC-CCCEEEEEccccchHHhhccCCCCcEeE
Q 026219 123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELA-LSNIHFLFANASVSFKQLVSSYPGPLML 201 (241)
Q Consensus 123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~-l~ni~~~~~D~~~~~~~~~~~~~~~~d~ 201 (241)
.++.+|||||||+|.++..+++.. .+|+|+|+++.+++.+++++...+ ..+++++.+|+.+. + ...+|.
T Consensus 35 ~~~~~VLEIG~G~G~LT~~Ll~~~---~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~-----~--~~~~d~ 104 (294)
T PTZ00338 35 KPTDTVLEIGPGTGNLTEKLLQLA---KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKT-----E--FPYFDV 104 (294)
T ss_pred CCcCEEEEecCchHHHHHHHHHhC---CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhh-----c--ccccCE
Confidence 346899999999999999999874 469999999999999999988766 46899999999762 1 134677
Q ss_pred EEEeCC
Q 026219 202 VSILCP 207 (241)
Q Consensus 202 V~~~~~ 207 (241)
|+.+.|
T Consensus 105 VvaNlP 110 (294)
T PTZ00338 105 CVANVP 110 (294)
T ss_pred EEecCC
Confidence 776654
No 176
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.83 E-value=2e-08 Score=87.34 Aligned_cols=74 Identities=19% Similarity=0.150 Sum_probs=59.6
Q ss_pred CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219 123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV 202 (241)
Q Consensus 123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V 202 (241)
.++.+|||||||+|.++..++++ . .+++|+|+++.+++.+++++.. ..|++++++|+.+ ++. ..+|.|
T Consensus 28 ~~~~~VLEIG~G~G~lt~~L~~~--~-~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~-----~~~--~~~d~V 95 (258)
T PRK14896 28 TDGDPVLEIGPGKGALTDELAKR--A-KKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALK-----VDL--PEFNKV 95 (258)
T ss_pred CCcCeEEEEeCccCHHHHHHHHh--C-CEEEEEECCHHHHHHHHHHhcc--CCCEEEEEecccc-----CCc--hhceEE
Confidence 34689999999999999999998 3 4799999999999999988754 4689999999986 221 236777
Q ss_pred EEeCCC
Q 026219 203 SILCPD 208 (241)
Q Consensus 203 ~~~~~~ 208 (241)
+.+.|-
T Consensus 96 v~NlPy 101 (258)
T PRK14896 96 VSNLPY 101 (258)
T ss_pred EEcCCc
Confidence 777553
No 177
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.80 E-value=1.5e-09 Score=94.20 Aligned_cols=133 Identities=21% Similarity=0.317 Sum_probs=83.8
Q ss_pred ccccCCcccccccccCccceecccccCCCCCCCCCCh-hhhHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEE
Q 026219 77 AELNLPVSNKITGELGHARIRQHVNPLSSSFTVPAPI-PDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGL 155 (241)
Q Consensus 77 ~~l~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~gi 155 (241)
.+++.+++|+||...... |..+...+|+. ..+.+. .+.+..++|+|||+|.++.. +|. +.++|+
T Consensus 7 ~eleqeyVh~IYd~ia~~--------fs~tr~~~Wp~v~qfl~~--~~~gsv~~d~gCGngky~~~----~p~-~~~ig~ 71 (293)
T KOG1331|consen 7 TELEQEYVHSIYDKIATH--------FSATRAAPWPMVRQFLDS--QPTGSVGLDVGCGNGKYLGV----NPL-CLIIGC 71 (293)
T ss_pred HHHHHHHhHHHHHHhhhh--------ccccccCccHHHHHHHhc--cCCcceeeecccCCcccCcC----CCc-ceeeec
Confidence 344555689999554421 22222233222 112222 24589999999999999977 687 889999
Q ss_pred eCCHHHHHHHHHHHHHhCCCCE-EEEEccccchHHhhccCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccc
Q 026219 156 EIRQKLVKRAEFWVQELALSNI-HFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLM 234 (241)
Q Consensus 156 Dis~~~v~~a~~~~~~~~l~ni-~~~~~D~~~~~~~~~~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~Lk 234 (241)
|++...+..+++ .+. ....+|+.+ .+..+.+||..+..-.-.|.. ...|| ..+++++.|+|+
T Consensus 72 D~c~~l~~~ak~-------~~~~~~~~ad~l~-----~p~~~~s~d~~lsiavihhls--T~~RR---~~~l~e~~r~lr 134 (293)
T KOG1331|consen 72 DLCTGLLGGAKR-------SGGDNVCRADALK-----LPFREESFDAALSIAVIHHLS--TRERR---ERALEELLRVLR 134 (293)
T ss_pred chhhhhcccccc-------CCCceeehhhhhc-----CCCCCCccccchhhhhhhhhh--hHHHH---HHHHHHHHHHhc
Confidence 999999988754 233 678899986 343456666442111111221 12233 499999999999
Q ss_pred cCCEEEc
Q 026219 235 PGGKVYF 241 (241)
Q Consensus 235 pGG~l~~ 241 (241)
|||...|
T Consensus 135 pgg~~lv 141 (293)
T KOG1331|consen 135 PGGNALV 141 (293)
T ss_pred CCCceEE
Confidence 9998543
No 178
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.80 E-value=3.4e-08 Score=90.42 Aligned_cols=113 Identities=15% Similarity=0.161 Sum_probs=87.4
Q ss_pred CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC--CEEEEEccccchHHhhccCCCCcEeEE
Q 026219 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS--NIHFLFANASVSFKQLVSSYPGPLMLV 202 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~--ni~~~~~D~~~~~~~~~~~~~~~~d~V 202 (241)
+.+|||+-|=||.+++..+..... +|++||+|...++.|++|++-||++ .+.|+++|+.+++..... -...||+|
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA~--~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~-~g~~fDlI 294 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGAS--EVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAER-RGEKFDLI 294 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCCC--ceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHh-cCCcccEE
Confidence 789999999999999999987543 7999999999999999999999974 589999999987765432 23489998
Q ss_pred EEeCCCCchhhhhhhc--ccchHHHHHHHHhccccCCEEEc
Q 026219 203 SILCPDPHFKKKHHKR--RVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 203 ~~~~~~~~~~~~~~~~--r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
++..|. ....+..+. .--+..++..+.++|+|||++++
T Consensus 295 ilDPPs-F~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~ 334 (393)
T COG1092 295 ILDPPS-FARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVT 334 (393)
T ss_pred EECCcc-cccCcccchhHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 877543 111111110 11345889999999999999874
No 179
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.79 E-value=4e-08 Score=85.06 Aligned_cols=112 Identities=16% Similarity=0.218 Sum_probs=85.7
Q ss_pred cCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhC----CCCEEEEEccccchHHhhccCCC
Q 026219 121 KNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELA----LSNIHFLFANASVSFKQLVSSYP 196 (241)
Q Consensus 121 ~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~----l~ni~~~~~D~~~~~~~~~~~~~ 196 (241)
..++..+||=||-|.|..+..+.+..+. .+++.||+++.+++.|++...... -++++++.+|+..++... +
T Consensus 73 ~~~~p~~VLiiGgG~G~~~~ell~~~~~-~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~----~ 147 (246)
T PF01564_consen 73 LHPNPKRVLIIGGGDGGTARELLKHPPV-ESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKET----Q 147 (246)
T ss_dssp HSSST-EEEEEESTTSHHHHHHTTSTT--SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTS----S
T ss_pred cCCCcCceEEEcCCChhhhhhhhhcCCc-ceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhc----c
Confidence 3345789999999999999999886545 689999999999999999766532 258999999998765432 3
Q ss_pred C-cEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 197 G-PLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 197 ~-~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
. .+|+|++...+|..... . +....+++.+.+.|+|||.+++
T Consensus 148 ~~~yDvIi~D~~dp~~~~~---~-l~t~ef~~~~~~~L~~~Gv~v~ 189 (246)
T PF01564_consen 148 EEKYDVIIVDLTDPDGPAP---N-LFTREFYQLCKRRLKPDGVLVL 189 (246)
T ss_dssp ST-EEEEEEESSSTTSCGG---G-GSSHHHHHHHHHHEEEEEEEEE
T ss_pred CCcccEEEEeCCCCCCCcc---c-ccCHHHHHHHHhhcCCCcEEEE
Confidence 4 89999998877543221 1 6678999999999999999863
No 180
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.78 E-value=7.5e-08 Score=79.79 Aligned_cols=96 Identities=30% Similarity=0.317 Sum_probs=80.7
Q ss_pred cEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEEeC
Q 026219 127 LMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSILC 206 (241)
Q Consensus 127 ~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~~ 206 (241)
+++|||+|.|--++.++=.+|+ .+++.+|.+.+-+...+.-.++.+++|++++++.+++ ......||.|+.--
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~-~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~------~~~~~~fd~v~aRA 123 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPD-LQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE------PEYRESFDVVTARA 123 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TT-SEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH------TTTTT-EEEEEEES
T ss_pred eEEecCCCCCChhHHHHHhCCC-CcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc------cccCCCccEEEeeh
Confidence 7999999999999999999999 8999999999999999999999999999999999975 12468899998766
Q ss_pred CCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 207 PDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 207 ~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
..+. ..+++-+.++|++||.+++
T Consensus 124 v~~l------------~~l~~~~~~~l~~~G~~l~ 146 (184)
T PF02527_consen 124 VAPL------------DKLLELARPLLKPGGRLLA 146 (184)
T ss_dssp SSSH------------HHHHHHHGGGEEEEEEEEE
T ss_pred hcCH------------HHHHHHHHHhcCCCCEEEE
Confidence 5543 3889999999999998874
No 181
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.77 E-value=7.1e-08 Score=83.61 Aligned_cols=59 Identities=17% Similarity=0.211 Sum_probs=51.2
Q ss_pred CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccc
Q 026219 123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV 186 (241)
Q Consensus 123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~ 186 (241)
.++.+|||||||+|.++..++++.+ .++++|+++.+++.++++... .++++++++|+.+
T Consensus 28 ~~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~ 86 (253)
T TIGR00755 28 LEGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALK 86 (253)
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhc
Confidence 3568999999999999999999864 499999999999999887643 3689999999986
No 182
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.77 E-value=1.4e-09 Score=91.73 Aligned_cols=98 Identities=20% Similarity=0.236 Sum_probs=66.7
Q ss_pred CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEE
Q 026219 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSI 204 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~ 204 (241)
=.++||+|||||-....|-.+.. +++|+|||++|+++|.++ ++ .=...++|+..+++. .-+..+|+|+.
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~a~---~ltGvDiS~nMl~kA~eK----g~-YD~L~~Aea~~Fl~~---~~~er~DLi~A 194 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDMAD---RLTGVDISENMLAKAHEK----GL-YDTLYVAEAVLFLED---LTQERFDLIVA 194 (287)
T ss_pred cceeeecccCcCcccHhHHHHHh---hccCCchhHHHHHHHHhc----cc-hHHHHHHHHHHHhhh---ccCCcccchhh
Confidence 46899999999999999877643 599999999999999763 32 113445565443221 23567887743
Q ss_pred eCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 205 LCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 205 ~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
.-..|+.- -.+.++--....|+|||.|.|
T Consensus 195 aDVl~YlG--------~Le~~~~~aa~~L~~gGlfaF 223 (287)
T COG4976 195 ADVLPYLG--------ALEGLFAGAAGLLAPGGLFAF 223 (287)
T ss_pred hhHHHhhc--------chhhHHHHHHHhcCCCceEEE
Confidence 22112111 114788889999999999876
No 183
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.77 E-value=7.2e-08 Score=88.16 Aligned_cols=100 Identities=20% Similarity=0.124 Sum_probs=81.0
Q ss_pred CcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEEe
Q 026219 126 PLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSIL 205 (241)
Q Consensus 126 ~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~ 205 (241)
.+|||+.||+|..++.++.+.++..+|+++|+++++++.+++|++.++..+++++++|+...+... ...||.|.+.
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~----~~~fDvIdlD 121 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYR----NRKFHVIDID 121 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHh----CCCCCEEEeC
Confidence 589999999999999999985332489999999999999999999998888999999998754331 3468877764
Q ss_pred CCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 206 CPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 206 ~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
... .. ..+++.+.+.+++||.+++
T Consensus 122 PfG----s~--------~~fld~al~~~~~~glL~v 145 (374)
T TIGR00308 122 PFG----TP--------APFVDSAIQASAERGLLLV 145 (374)
T ss_pred CCC----Cc--------HHHHHHHHHhcccCCEEEE
Confidence 211 11 3899999999999999875
No 184
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=1.2e-08 Score=80.48 Aligned_cols=81 Identities=19% Similarity=0.185 Sum_probs=63.9
Q ss_pred hcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcE
Q 026219 120 YKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPL 199 (241)
Q Consensus 120 ~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~ 199 (241)
+++-++.+++|+|||.|.+.+..+.-.+ -.|+|+||+|++++++++|+++..+ ++.++++|+.+. ....+.|
T Consensus 44 ygdiEgkkl~DLgcgcGmLs~a~sm~~~--e~vlGfDIdpeALEIf~rNaeEfEv-qidlLqcdildl-----e~~~g~f 115 (185)
T KOG3420|consen 44 YGDIEGKKLKDLGCGCGMLSIAFSMPKN--ESVLGFDIDPEALEIFTRNAEEFEV-QIDLLQCDILDL-----ELKGGIF 115 (185)
T ss_pred hccccCcchhhhcCchhhhHHHhhcCCC--ceEEeeecCHHHHHHHhhchHHhhh-hhheeeeeccch-----hccCCeE
Confidence 5556789999999999999955544323 4799999999999999999988776 679999999872 2123778
Q ss_pred eEEEEeCCC
Q 026219 200 MLVSILCPD 208 (241)
Q Consensus 200 d~V~~~~~~ 208 (241)
|.++++.|.
T Consensus 116 DtaviNppF 124 (185)
T KOG3420|consen 116 DTAVINPPF 124 (185)
T ss_pred eeEEecCCC
Confidence 988887654
No 185
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.76 E-value=2.2e-08 Score=81.24 Aligned_cols=76 Identities=21% Similarity=0.230 Sum_probs=55.0
Q ss_pred cEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCCCcEeEEEEe
Q 026219 127 LMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYPGPLMLVSIL 205 (241)
Q Consensus 127 ~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~ 205 (241)
+|+|+.||.|..++.+|+.+. +|++||+++..++.|+.|++-+|. ++++++++|+.+....... ...+|.|++.
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~---~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~--~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFD---RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKS--NKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB--------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccc--cccccEEEEC
Confidence 699999999999999999864 599999999999999999999997 5899999999875433211 1226887766
Q ss_pred CC
Q 026219 206 CP 207 (241)
Q Consensus 206 ~~ 207 (241)
.|
T Consensus 77 PP 78 (163)
T PF09445_consen 77 PP 78 (163)
T ss_dssp --
T ss_pred CC
Confidence 43
No 186
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.76 E-value=5e-08 Score=91.14 Aligned_cols=103 Identities=12% Similarity=0.175 Sum_probs=72.4
Q ss_pred CCcEEEEcCCccHHHHHHHHHC----CCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCCCcE
Q 026219 125 LPLMVDIGSGSGRFLIWLARRN----PDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYPGPL 199 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~----p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~~~~ 199 (241)
..+|+|||||+|.+....++.. .. .+|++||.|+.++...+++++.+++ ++|+++.+|+.+. . .+..+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a-~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v-----~-lpekv 259 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGA-VKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREV-----E-LPEKV 259 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCE-SEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTS-----C-HSS-E
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCC-eEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCC-----C-CCCce
Confidence 4689999999999987766543 23 5899999999999888888788887 5799999999872 2 24689
Q ss_pred eEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 200 MLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 200 d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
|+|+.-.-..... ..+....|....|.|||||.++
T Consensus 260 DIIVSElLGsfg~------nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 260 DIIVSELLGSFGD------NELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EEEEE---BTTBT------TTSHHHHHHHGGGGEEEEEEEE
T ss_pred eEEEEeccCCccc------cccCHHHHHHHHhhcCCCCEEe
Confidence 9886532111000 0123478889999999999875
No 187
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.73 E-value=2e-07 Score=82.28 Aligned_cols=116 Identities=19% Similarity=0.197 Sum_probs=89.0
Q ss_pred CCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeE
Q 026219 122 NPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLML 201 (241)
Q Consensus 122 ~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~ 201 (241)
..++..|||+++|.|.-+..+++...+.+.+++.|+++..+...++++++.|..++.....|+....+... ...||.
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~---~~~fd~ 159 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKP---ESKFDR 159 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHH---TTTEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeecccccccccc---ccccch
Confidence 34578899999999999999999987558999999999999999999999999999999899876433332 346999
Q ss_pred EEEeCCCCc----hhhhhhhc----------ccchHHHHHHHHhcc----ccCCEEE
Q 026219 202 VSILCPDPH----FKKKHHKR----------RVVQKPLVDSIIDYL----MPGGKVY 240 (241)
Q Consensus 202 V~~~~~~~~----~~~~~~~~----------r~~~~~ll~~l~r~L----kpGG~l~ 240 (241)
|.+.-|-.. .+++..++ -.++.++|+.+.+.| ||||+++
T Consensus 160 VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lv 216 (283)
T PF01189_consen 160 VLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLV 216 (283)
T ss_dssp EEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEE
T ss_pred hhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEE
Confidence 988654210 01111111 126789999999999 9999986
No 188
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.71 E-value=7.4e-08 Score=86.60 Aligned_cols=99 Identities=14% Similarity=0.210 Sum_probs=83.3
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCC-EEEEEccccchHHhhccCCCCcEeEE
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IHFLFANASVSFKQLVSSYPGPLMLV 202 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~n-i~~~~~D~~~~~~~~~~~~~~~~d~V 202 (241)
++.+|||.=+|.|.+++.+|+.... .|+++|++|.+++..++|++.|++.+ +..+.+|+.+..+. -+.+|.|
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g~~--~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~-----~~~aDrI 260 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKGRP--KVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPE-----LGVADRI 260 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcCCc--eEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhc-----cccCCEE
Confidence 3899999999999999999997654 49999999999999999999999976 89999999873222 1678999
Q ss_pred EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
++..|... ..++....+.|++||.+.+
T Consensus 261 im~~p~~a------------~~fl~~A~~~~k~~g~iHy 287 (341)
T COG2520 261 IMGLPKSA------------HEFLPLALELLKDGGIIHY 287 (341)
T ss_pred EeCCCCcc------------hhhHHHHHHHhhcCcEEEE
Confidence 98876521 2888889999999998863
No 189
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.70 E-value=6.3e-08 Score=79.39 Aligned_cols=106 Identities=15% Similarity=0.123 Sum_probs=66.5
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhC--C-CCEEEEEccccchH-HhhccCCCCcE
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELA--L-SNIHFLFANASVSF-KQLVSSYPGPL 199 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~--l-~ni~~~~~D~~~~~-~~~~~~~~~~~ 199 (241)
.+.+|||||||+|..++.+++..+. ..|+..|.++ .++.++.|++.++ . .++.+...|=.+.. +... .+..|
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~~~-~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~--~~~~~ 120 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLFGA-ARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLL--EPHSF 120 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT-T--SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHH--S-SSB
T ss_pred CCceEEEECCccchhHHHHHhccCC-ceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCccccccc--ccccC
Confidence 4689999999999999999998555 6899999999 9999999998876 2 45777665533222 1222 24678
Q ss_pred eEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 200 MLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 200 d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
|.|+..-.--.. ...+.+++.+.++|+|+|.+++
T Consensus 121 D~IlasDv~Y~~--------~~~~~L~~tl~~ll~~~~~vl~ 154 (173)
T PF10294_consen 121 DVILASDVLYDE--------ELFEPLVRTLKRLLKPNGKVLL 154 (173)
T ss_dssp SEEEEES--S-G--------GGHHHHHHHHHHHBTT-TTEEE
T ss_pred CEEEEecccchH--------HHHHHHHHHHHHHhCCCCEEEE
Confidence 987643111011 1236999999999999998664
No 190
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.70 E-value=1.7e-07 Score=82.61 Aligned_cols=110 Identities=14% Similarity=0.180 Sum_probs=88.3
Q ss_pred CCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhC----CCCEEEEEccccchHHhhccCCCC
Q 026219 122 NPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELA----LSNIHFLFANASVSFKQLVSSYPG 197 (241)
Q Consensus 122 ~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~----l~ni~~~~~D~~~~~~~~~~~~~~ 197 (241)
.++.++||-||-|.|.++..+.+..+. .+++.|||++.+++.+++.+.... -++++++.+|+.+++.. ...
T Consensus 74 h~~pk~VLiiGgGdG~tlRevlkh~~v-e~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~----~~~ 148 (282)
T COG0421 74 HPNPKRVLIIGGGDGGTLREVLKHLPV-ERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRD----CEE 148 (282)
T ss_pred CCCCCeEEEECCCccHHHHHHHhcCCc-ceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHh----CCC
Confidence 344469999999999999999998766 799999999999999999876543 35789999999886543 245
Q ss_pred cEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 198 PLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 198 ~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
.||+|++...+|-.. -..++...+++.+.+.|+++|.++
T Consensus 149 ~fDvIi~D~tdp~gp----~~~Lft~eFy~~~~~~L~~~Gi~v 187 (282)
T COG0421 149 KFDVIIVDSTDPVGP----AEALFTEEFYEGCRRALKEDGIFV 187 (282)
T ss_pred cCCEEEEcCCCCCCc----ccccCCHHHHHHHHHhcCCCcEEE
Confidence 899999887776211 124566799999999999999986
No 191
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.69 E-value=1.5e-07 Score=83.35 Aligned_cols=89 Identities=11% Similarity=0.056 Sum_probs=66.8
Q ss_pred hhHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccC
Q 026219 115 DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSS 194 (241)
Q Consensus 115 ~~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~ 194 (241)
+..+.+...++.++||.+||.|..+..+++..+..+.|+|+|.++++++.|++++.+ ..+++++++|..+.... .+.
T Consensus 10 Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~~~-l~~ 86 (296)
T PRK00050 10 EVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLKEV-LAE 86 (296)
T ss_pred HHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHHHH-HHc
Confidence 344445433467999999999999999999986337999999999999999988765 46899999999874332 221
Q ss_pred CCCcEeEEEEeC
Q 026219 195 YPGPLMLVSILC 206 (241)
Q Consensus 195 ~~~~~d~V~~~~ 206 (241)
...++|.|++.+
T Consensus 87 ~~~~vDgIl~DL 98 (296)
T PRK00050 87 GLGKVDGILLDL 98 (296)
T ss_pred CCCccCEEEECC
Confidence 112688886543
No 192
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=9.6e-08 Score=79.73 Aligned_cols=99 Identities=22% Similarity=0.354 Sum_probs=77.3
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCC-cEEEEEeCCHHHHHHHHHHHHHhC--------C--CCEEEEEccccchHHhhc
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDS-GNYLGLEIRQKLVKRAEFWVQELA--------L--SNIHFLFANASVSFKQLV 192 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~-~~v~giDis~~~v~~a~~~~~~~~--------l--~ni~~~~~D~~~~~~~~~ 192 (241)
++.+.||+|.|+|.++..+++..... ...+|||.-+++++.+++++.+.- + .++.++++|....
T Consensus 82 pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g----- 156 (237)
T KOG1661|consen 82 PGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKG----- 156 (237)
T ss_pred cCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCcccc-----
Confidence 37899999999999999999765321 345999999999999999987642 2 3688999999863
Q ss_pred cCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 193 SSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 193 ~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
......+|.|.+--..+ .+.+++...|+|||++++
T Consensus 157 ~~e~a~YDaIhvGAaa~--------------~~pq~l~dqL~~gGrlli 191 (237)
T KOG1661|consen 157 YAEQAPYDAIHVGAAAS--------------ELPQELLDQLKPGGRLLI 191 (237)
T ss_pred CCccCCcceEEEccCcc--------------ccHHHHHHhhccCCeEEE
Confidence 22347789887765444 777788999999999875
No 193
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.68 E-value=8.6e-08 Score=85.12 Aligned_cols=99 Identities=18% Similarity=0.345 Sum_probs=72.4
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCCCcEeEE
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYPGPLMLV 202 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~~~~d~V 202 (241)
.+..|||+|||+|.+.+..++.... +|++||-|+ |.+.|++.++.+++ .+|.++.|-+++ ++ .|+.+|++
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~--~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiEd-----ie-LPEk~Dvi 247 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAK--KVYAVEASE-MAQYARKLVASNNLADRITVIPGKIED-----IE-LPEKVDVI 247 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcc--eEEEEehhH-HHHHHHHHHhcCCccceEEEccCcccc-----cc-CchhccEE
Confidence 5689999999999999999998654 899999875 88999999887766 469999998876 33 35778865
Q ss_pred EEeCCCCchhhhhhhcccchHHHHH---HHHhccccCCEEE
Q 026219 203 SILCPDPHFKKKHHKRRVVQKPLVD---SIIDYLMPGGKVY 240 (241)
Q Consensus 203 ~~~~~~~~~~~~~~~~r~~~~~ll~---~l~r~LkpGG~l~ 240 (241)
+.. |...+ ++++.+|+ ...+.|||.|.++
T Consensus 248 ISE-PMG~m--------L~NERMLEsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 248 ISE-PMGYM--------LVNERMLESYLHARKWLKPNGKMF 279 (517)
T ss_pred Eec-cchhh--------hhhHHHHHHHHHHHhhcCCCCccc
Confidence 432 22111 22233333 2458999999875
No 194
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=6.5e-08 Score=89.97 Aligned_cols=71 Identities=28% Similarity=0.341 Sum_probs=62.2
Q ss_pred hcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhcc
Q 026219 120 YKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVS 193 (241)
Q Consensus 120 ~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~ 193 (241)
...+....+||+.||||.+.+.+++... .|+|||+++..++-|+.|++.+|++|.+|+++-+++.++.++.
T Consensus 379 ~~l~~~k~llDv~CGTG~iglala~~~~---~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~~sl~~ 449 (534)
T KOG2187|consen 379 AGLPADKTLLDVCCGTGTIGLALARGVK---RVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLFPSLLT 449 (534)
T ss_pred hCCCCCcEEEEEeecCCceehhhhcccc---ceeeeecChhhcchhhhcchhcCccceeeeecchhhccchhcc
Confidence 3445568999999999999999999864 5999999999999999999999999999999988887666554
No 195
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=2.7e-07 Score=83.95 Aligned_cols=115 Identities=18% Similarity=0.218 Sum_probs=84.7
Q ss_pred CCCCcEEEEcCCccHHHHHHHHHCCCC-cEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCC-cEe
Q 026219 123 PTLPLMVDIGSGSGRFLIWLARRNPDS-GNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPG-PLM 200 (241)
Q Consensus 123 ~~~~~VLDIGCGtG~~~~~la~~~p~~-~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~-~~d 200 (241)
.++.+|||++++.|.-+.++++...+. ..|+++|+++.-++..++|+++.|+.|+..++.|........ +.+ .||
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~---~~~~~fD 231 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELL---PGGEKFD 231 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccc---cccCcCc
Confidence 357999999999999999999987542 456999999999999999999999999899988886421111 122 488
Q ss_pred EEEEeCCC---------Cchhhh-----hhhcccchHHHHHHHHhccccCCEEE
Q 026219 201 LVSILCPD---------PHFKKK-----HHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 201 ~V~~~~~~---------~~~~~~-----~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
.|.+.-|- |..+.. -.+--.+|.++|+...++|||||.|+
T Consensus 232 ~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LV 285 (355)
T COG0144 232 RILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLV 285 (355)
T ss_pred EEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence 87664331 111100 01112277899999999999999986
No 196
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.63 E-value=8.7e-08 Score=81.98 Aligned_cols=91 Identities=11% Similarity=0.146 Sum_probs=57.4
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCE-EEEEccccch-HHhhccCCC-CcEe
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNI-HFLFANASVS-FKQLVSSYP-GPLM 200 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni-~~~~~D~~~~-~~~~~~~~~-~~~d 200 (241)
++.+|||+|||||.++..+++... ..|+|+|++++|+... ++++ .++ .+...|+... .+. +. ++ ..+|
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga--~~v~avD~~~~~l~~~---l~~~--~~v~~~~~~ni~~~~~~~-~~-~d~~~~D 145 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGA--KEVYGVDVGYNQLAEK---LRQD--ERVKVLERTNIRYVTPAD-IF-PDFATFD 145 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCC--CEEEEEeCCHHHHHHH---HhcC--CCeeEeecCCcccCCHhH-cC-CCceeee
Confidence 567899999999999999999743 4899999999887652 1111 222 2333344321 111 11 12 3567
Q ss_pred EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
++++... .++..+.++|+| |.++
T Consensus 146 vsfiS~~----------------~~l~~i~~~l~~-~~~~ 168 (228)
T TIGR00478 146 VSFISLI----------------SILPELDLLLNP-NDLT 168 (228)
T ss_pred EEEeehH----------------hHHHHHHHHhCc-CeEE
Confidence 6555431 467778888888 7655
No 197
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.63 E-value=8e-08 Score=87.33 Aligned_cols=59 Identities=24% Similarity=0.332 Sum_probs=48.4
Q ss_pred CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccc
Q 026219 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV 186 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~ 186 (241)
...|||+-||.|.+++.+|+... +|+|||+++.+++.|++|++.++++|++|+.+++.+
T Consensus 197 ~~~vlDlycG~G~fsl~la~~~~---~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~ 255 (352)
T PF05958_consen 197 KGDVLDLYCGVGTFSLPLAKKAK---KVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAED 255 (352)
T ss_dssp TTEEEEES-TTTCCHHHHHCCSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHH
T ss_pred CCcEEEEeecCCHHHHHHHhhCC---eEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccc
Confidence 34799999999999999999854 599999999999999999999999999999988765
No 198
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.58 E-value=3.7e-07 Score=78.80 Aligned_cols=92 Identities=17% Similarity=0.142 Sum_probs=66.1
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS 203 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~ 203 (241)
...++||||.|.|..+..++..+.+ |++.|.|+.|..+.++ .| ++++ |..++ ..-+.+||+|.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~---v~aTE~S~~Mr~rL~~----kg---~~vl--~~~~w-----~~~~~~fDvIs 156 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKE---VYATEASPPMRWRLSK----KG---FTVL--DIDDW-----QQTDFKFDVIS 156 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcce---EEeecCCHHHHHHHHh----CC---CeEE--ehhhh-----hccCCceEEEe
Confidence 3568999999999999999998876 9999999999776543 33 4444 33221 11246799886
Q ss_pred E-eCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 204 I-LCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 204 ~-~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
+ |.-|... ++ ..+|+.+++.|+|+|.+++
T Consensus 157 cLNvLDRc~-~P--------~~LL~~i~~~l~p~G~lil 186 (265)
T PF05219_consen 157 CLNVLDRCD-RP--------LTLLRDIRRALKPNGRLIL 186 (265)
T ss_pred ehhhhhccC-CH--------HHHHHHHHHHhCCCCEEEE
Confidence 4 3333211 11 4999999999999999875
No 199
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.57 E-value=2.7e-07 Score=72.42 Aligned_cols=59 Identities=22% Similarity=0.324 Sum_probs=53.5
Q ss_pred cEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccc
Q 026219 127 LMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV 186 (241)
Q Consensus 127 ~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~ 186 (241)
+++|||||.|.++..+++.++. ++++++|.++.+.+.++++++.+++++++++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~-~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAE-GRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCC-CEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 4899999999999999999887 7999999999999999999998888788888877654
No 200
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.56 E-value=1.2e-06 Score=72.30 Aligned_cols=108 Identities=21% Similarity=0.152 Sum_probs=79.1
Q ss_pred CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCCCcEeE
Q 026219 123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYPGPLML 201 (241)
Q Consensus 123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~~~~d~ 201 (241)
-.+.++||+-+|+|.+++..+.++.. .++.||.+...+...++|++..+. .+.+++..|+...+..... ...||+
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSRGA~--~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~--~~~FDl 117 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSRGAA--RVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGT--REPFDL 117 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhCCCc--eEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCC--CCcccE
Confidence 35799999999999999999998765 899999999999999999998885 4789999999854433221 225998
Q ss_pred EEEeCCCCchhhhhhhcccchHHHHHH--HHhccccCCEEEc
Q 026219 202 VSILCPDPHFKKKHHKRRVVQKPLVDS--IIDYLMPGGKVYF 241 (241)
Q Consensus 202 V~~~~~~~~~~~~~~~~r~~~~~ll~~--l~r~LkpGG~l~~ 241 (241)
|++..|-.+. .......+.. -..+|+|||.+++
T Consensus 118 VflDPPy~~~-------l~~~~~~~~~~~~~~~L~~~~~iv~ 152 (187)
T COG0742 118 VFLDPPYAKG-------LLDKELALLLLEENGWLKPGALIVV 152 (187)
T ss_pred EEeCCCCccc-------hhhHHHHHHHHHhcCCcCCCcEEEE
Confidence 8876543211 0100122222 4578999999875
No 201
>PRK04148 hypothetical protein; Provisional
Probab=98.55 E-value=6.7e-07 Score=70.19 Aligned_cols=74 Identities=14% Similarity=0.107 Sum_probs=54.2
Q ss_pred CCCCCcEEEEcCCccH-HHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEe
Q 026219 122 NPTLPLMVDIGSGSGR-FLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLM 200 (241)
Q Consensus 122 ~~~~~~VLDIGCGtG~-~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d 200 (241)
..++.+|||||||+|. .+..|++. + .+|+|+|++++.++.++++ .++++++|+.+.-..+. ..+|
T Consensus 14 ~~~~~kileIG~GfG~~vA~~L~~~--G-~~ViaIDi~~~aV~~a~~~-------~~~~v~dDlf~p~~~~y----~~a~ 79 (134)
T PRK04148 14 KGKNKKIVELGIGFYFKVAKKLKES--G-FDVIVIDINEKAVEKAKKL-------GLNAFVDDLFNPNLEIY----KNAK 79 (134)
T ss_pred cccCCEEEEEEecCCHHHHHHHHHC--C-CEEEEEECCHHHHHHHHHh-------CCeEEECcCCCCCHHHH----hcCC
Confidence 3345789999999996 88888875 4 5799999999998887653 36899999976322221 4467
Q ss_pred EEEEeCCCC
Q 026219 201 LVSILCPDP 209 (241)
Q Consensus 201 ~V~~~~~~~ 209 (241)
+|....|.+
T Consensus 80 liysirpp~ 88 (134)
T PRK04148 80 LIYSIRPPR 88 (134)
T ss_pred EEEEeCCCH
Confidence 777666654
No 202
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.53 E-value=1.1e-06 Score=76.91 Aligned_cols=105 Identities=21% Similarity=0.305 Sum_probs=79.2
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCC-CcEEEEEeCCHHHHHHHHHHHHHhCCCCE-EEEEccccchHHhhccCCCCcEeE
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPD-SGNYLGLEIRQKLVKRAEFWVQELALSNI-HFLFANASVSFKQLVSSYPGPLML 201 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~-~~~v~giDis~~~v~~a~~~~~~~~l~ni-~~~~~D~~~~~~~~~~~~~~~~d~ 201 (241)
..-+||||.||.|.+.+......|. ...|.-.|.|+..++..++.+++.|+.++ +|.++|+.+. ..+... +-..++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~-~~l~~l-~p~P~l 212 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDR-DSLAAL-DPAPTL 212 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCH-hHhhcc-CCCCCE
Confidence 4578999999999999999988874 35899999999999999999999999886 9999999863 121111 112233
Q ss_pred EE-----EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 202 VS-----ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 202 V~-----~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
++ =.|+|-. +....++-+.+.|.|||.++
T Consensus 213 ~iVsGL~ElF~Dn~----------lv~~sl~gl~~al~pgG~lI 246 (311)
T PF12147_consen 213 AIVSGLYELFPDND----------LVRRSLAGLARALEPGGYLI 246 (311)
T ss_pred EEEecchhhCCcHH----------HHHHHHHHHHHHhCCCcEEE
Confidence 32 2445421 22467888999999999987
No 203
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.51 E-value=1.2e-06 Score=70.81 Aligned_cols=105 Identities=16% Similarity=0.154 Sum_probs=75.5
Q ss_pred CCCcEEEEcCCccHHHHHHHHHC-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRN-PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV 202 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~-p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V 202 (241)
++.-|||+|.|||-++..+.++. ++ ..+++||.|++.+....+.. +.++++.+|+.+.-..+-+..+..||.|
T Consensus 48 sglpVlElGPGTGV~TkaIL~~gv~~-~~L~~iE~~~dF~~~L~~~~-----p~~~ii~gda~~l~~~l~e~~gq~~D~v 121 (194)
T COG3963 48 SGLPVLELGPGTGVITKAILSRGVRP-ESLTAIEYSPDFVCHLNQLY-----PGVNIINGDAFDLRTTLGEHKGQFFDSV 121 (194)
T ss_pred cCCeeEEEcCCccHhHHHHHhcCCCc-cceEEEEeCHHHHHHHHHhC-----CCccccccchhhHHHHHhhcCCCeeeeE
Confidence 45689999999999999988876 44 68999999999998876532 5677999999753223333345567888
Q ss_pred EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
+...|.-.+.- +++ -++++.+...|.+||.++
T Consensus 122 iS~lPll~~P~---~~~---iaile~~~~rl~~gg~lv 153 (194)
T COG3963 122 ISGLPLLNFPM---HRR---IAILESLLYRLPAGGPLV 153 (194)
T ss_pred EeccccccCcH---HHH---HHHHHHHHHhcCCCCeEE
Confidence 76544311110 112 389999999999999875
No 204
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.47 E-value=2.8e-07 Score=77.19 Aligned_cols=83 Identities=12% Similarity=0.169 Sum_probs=52.9
Q ss_pred CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219 123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV 202 (241)
Q Consensus 123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V 202 (241)
|+..+|.|+|||.+.++..+. ....|...|+-.. |-.+..+|+.. .+..++++|++
T Consensus 71 ~~~~viaD~GCGdA~la~~~~----~~~~V~SfDLva~---------------n~~Vtacdia~-----vPL~~~svDv~ 126 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLAKAVP----NKHKVHSFDLVAP---------------NPRVTACDIAN-----VPLEDESVDVA 126 (219)
T ss_dssp -TTS-EEEES-TT-HHHHH------S---EEEEESS-S---------------STTEEES-TTS------S--TT-EEEE
T ss_pred CCCEEEEECCCchHHHHHhcc----cCceEEEeeccCC---------------CCCEEEecCcc-----CcCCCCceeEE
Confidence 446799999999999986643 2146999999652 22477899975 45568999998
Q ss_pred EEeCCC---CchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 203 SILCPD---PHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 203 ~~~~~~---~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
+...+. -| ..+++|+.|+|||||.+.|
T Consensus 127 VfcLSLMGTn~------------~~fi~EA~RvLK~~G~L~I 156 (219)
T PF05148_consen 127 VFCLSLMGTNW------------PDFIREANRVLKPGGILKI 156 (219)
T ss_dssp EEES---SS-H------------HHHHHHHHHHEEEEEEEEE
T ss_pred EEEhhhhCCCc------------HHHHHHHHheeccCcEEEE
Confidence 876643 23 3999999999999999876
No 205
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.47 E-value=2.1e-06 Score=74.37 Aligned_cols=99 Identities=17% Similarity=0.149 Sum_probs=81.2
Q ss_pred CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCCCcEeE
Q 026219 123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYPGPLML 201 (241)
Q Consensus 123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~~~~d~ 201 (241)
.++.+|+|-|+|+|++.-.+++.....++++..|+.+...+.|++..++.++ +|+++.+-|+... .+...+..+|.
T Consensus 104 ~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~---GF~~ks~~aDa 180 (314)
T KOG2915|consen 104 RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGS---GFLIKSLKADA 180 (314)
T ss_pred CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccC---Cccccccccce
Confidence 3589999999999999999999985558999999999999999999999988 5899999998751 12212466899
Q ss_pred EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCC
Q 026219 202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGG 237 (241)
Q Consensus 202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG 237 (241)
|++..|.||. .+-.++..||.+|
T Consensus 181 VFLDlPaPw~-------------AiPha~~~lk~~g 203 (314)
T KOG2915|consen 181 VFLDLPAPWE-------------AIPHAAKILKDEG 203 (314)
T ss_pred EEEcCCChhh-------------hhhhhHHHhhhcC
Confidence 9999999984 4445677888776
No 206
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.44 E-value=4.9e-07 Score=77.78 Aligned_cols=84 Identities=13% Similarity=0.192 Sum_probs=63.4
Q ss_pred CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219 123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV 202 (241)
Q Consensus 123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V 202 (241)
+.+.+|.|+|||-+.++.. -++ .|+..|+-+ .|-+++.+|+.+ .+..|+++|++
T Consensus 179 ~~~~vIaD~GCGEakiA~~----~~~--kV~SfDL~a---------------~~~~V~~cDm~~-----vPl~d~svDva 232 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIASS----ERH--KVHSFDLVA---------------VNERVIACDMRN-----VPLEDESVDVA 232 (325)
T ss_pred cCceEEEecccchhhhhhc----ccc--ceeeeeeec---------------CCCceeeccccC-----CcCccCcccEE
Confidence 5578999999999998862 333 699999854 255788899987 45568999988
Q ss_pred EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
+...+.-. .+ ...++++++|+|+|||.++|
T Consensus 233 V~CLSLMg-tn--------~~df~kEa~RiLk~gG~l~I 262 (325)
T KOG3045|consen 233 VFCLSLMG-TN--------LADFIKEANRILKPGGLLYI 262 (325)
T ss_pred EeeHhhhc-cc--------HHHHHHHHHHHhccCceEEE
Confidence 76654311 11 14999999999999999986
No 207
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.36 E-value=4.9e-06 Score=74.60 Aligned_cols=109 Identities=14% Similarity=0.146 Sum_probs=72.9
Q ss_pred CCCcEEEEcCCccHHHHHHHHHC----CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEE--EEccccchHHhhcc-CCC
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRN----PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHF--LFANASVSFKQLVS-SYP 196 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~----p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~--~~~D~~~~~~~~~~-~~~ 196 (241)
++..|+|+|||+|.-+..|.+.. .. ..+++||+|.++++.+.+++.....+++.+ +.+|..+.+..+.. ...
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~-~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~ 154 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKS-VDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENR 154 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCC-ceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhccccccc
Confidence 35689999999999888776654 23 579999999999999999987445566555 88998775433211 011
Q ss_pred CcEeEEEEe---CCCCchhhhhhhcccchHHHHHHHHh-ccccCCEEEc
Q 026219 197 GPLMLVSIL---CPDPHFKKKHHKRRVVQKPLVDSIID-YLMPGGKVYF 241 (241)
Q Consensus 197 ~~~d~V~~~---~~~~~~~~~~~~~r~~~~~ll~~l~r-~LkpGG~l~~ 241 (241)
....+++.. +.+-.+.+. ..+|+++.+ .|+|||.|+|
T Consensus 155 ~~~r~~~flGSsiGNf~~~ea--------~~fL~~~~~~~l~~~d~lLi 195 (319)
T TIGR03439 155 SRPTTILWLGSSIGNFSRPEA--------AAFLAGFLATALSPSDSFLI 195 (319)
T ss_pred CCccEEEEeCccccCCCHHHH--------HHHHHHHHHhhCCCCCEEEE
Confidence 112333211 111111222 489999999 9999999875
No 208
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=98.36 E-value=4.8e-07 Score=67.67 Aligned_cols=100 Identities=22% Similarity=0.386 Sum_probs=44.6
Q ss_pred EEEcCCccHHHHHHHHHCCCCc--EEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCCCcEeEEEEe
Q 026219 129 VDIGSGSGRFLIWLARRNPDSG--NYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYPGPLMLVSIL 205 (241)
Q Consensus 129 LDIGCGtG~~~~~la~~~p~~~--~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~ 205 (241)
||||+..|..+..+++..+... +++++|..+. .+..++.+++.++ .+++++.+|..+.++.+. +..+|++++.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~---~~~~dli~iD 76 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLP---DGPIDLIFID 76 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHH---H--EEEEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcC---CCCEEEEEEC
Confidence 6999999999999888665412 6999999996 4444455554555 479999999988766543 4789998887
Q ss_pred CCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 206 CPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 206 ~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
-... .+. ....++.+.+.|+|||.+++
T Consensus 77 g~H~-~~~--------~~~dl~~~~~~l~~ggviv~ 103 (106)
T PF13578_consen 77 GDHS-YEA--------VLRDLENALPRLAPGGVIVF 103 (106)
T ss_dssp S----HHH--------HHHHHHHHGGGEEEEEEEEE
T ss_pred CCCC-HHH--------HHHHHHHHHHHcCCCeEEEE
Confidence 5321 111 13778889999999999875
No 209
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.36 E-value=2.6e-06 Score=72.05 Aligned_cols=97 Identities=25% Similarity=0.181 Sum_probs=79.1
Q ss_pred CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCc-EeEEE
Q 026219 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGP-LMLVS 203 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~-~d~V~ 203 (241)
..+++|||+|.|--++.+|=.+|+ .+|+-+|...+-+...++..++.+++|++++++-+++. .. ... +|.|+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~-~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~-----~~-~~~~~D~vt 140 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPD-LKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEF-----GQ-EKKQYDVVT 140 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccC-CcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhc-----cc-ccccCcEEE
Confidence 479999999999999999988898 78999999999999999999999999999999999872 21 112 88876
Q ss_pred EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
.--..+- ..+++-+..+||+||.++
T Consensus 141 sRAva~L------------~~l~e~~~pllk~~g~~~ 165 (215)
T COG0357 141 SRAVASL------------NVLLELCLPLLKVGGGFL 165 (215)
T ss_pred eehccch------------HHHHHHHHHhcccCCcch
Confidence 5433221 377778889999988753
No 210
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.34 E-value=2.4e-06 Score=74.16 Aligned_cols=74 Identities=18% Similarity=0.124 Sum_probs=58.0
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCC-cEeEE
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPG-PLMLV 202 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~-~~d~V 202 (241)
++..|||||+|.|.+|..|+++. ..|++||+++.+++..++... ...|++++++|+.+. +.+.- ..+.|
T Consensus 30 ~~d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaLk~-----d~~~l~~~~~v 99 (259)
T COG0030 30 PGDNVLEIGPGLGALTEPLLERA---ARVTAIEIDRRLAEVLKERFA--PYDNLTVINGDALKF-----DFPSLAQPYKV 99 (259)
T ss_pred CCCeEEEECCCCCHHHHHHHhhc---CeEEEEEeCHHHHHHHHHhcc--cccceEEEeCchhcC-----cchhhcCCCEE
Confidence 36899999999999999999984 359999999999999988764 346899999999872 21111 45566
Q ss_pred EEeCC
Q 026219 203 SILCP 207 (241)
Q Consensus 203 ~~~~~ 207 (241)
+.+.|
T Consensus 100 VaNlP 104 (259)
T COG0030 100 VANLP 104 (259)
T ss_pred EEcCC
Confidence 66654
No 211
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.34 E-value=2.8e-06 Score=71.10 Aligned_cols=107 Identities=16% Similarity=0.140 Sum_probs=62.6
Q ss_pred CCCcEEEEcCCccH----HHHHHHHH----CCCCcEEEEEeCCHHHHHHHHHH--------------HHHh-----C---
Q 026219 124 TLPLMVDIGSGSGR----FLIWLARR----NPDSGNYLGLEIRQKLVKRAEFW--------------VQEL-----A--- 173 (241)
Q Consensus 124 ~~~~VLDIGCGtG~----~~~~la~~----~p~~~~v~giDis~~~v~~a~~~--------------~~~~-----~--- 173 (241)
..-+|...||+||. +++.+.+. .+...+|+|+|+|+.+++.|++- .++. +
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 35789999999993 44444452 12126899999999999999852 1111 1
Q ss_pred -----C-CCEEEEEccccchHHhhccCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 174 -----L-SNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 174 -----l-~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
+ ++++|.+.|+.+ ...+.+.+|+|++-...-++... .+..+++.+++.|+|||.+++
T Consensus 111 ~v~~~lr~~V~F~~~NL~~-----~~~~~~~fD~I~CRNVlIYF~~~------~~~~vl~~l~~~L~pgG~L~l 173 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLD-----PDPPFGRFDLIFCRNVLIYFDPE------TQQRVLRRLHRSLKPGGYLFL 173 (196)
T ss_dssp TE-HHHHTTEEEEE--TT------S------EEEEEE-SSGGGS-HH------HHHHHHHHHGGGEEEEEEEEE
T ss_pred eEChHHcCceEEEecccCC-----CCcccCCccEEEecCEEEEeCHH------HHHHHHHHHHHHcCCCCEEEE
Confidence 1 257777777765 12235789998764333222221 235999999999999999985
No 212
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.32 E-value=7.3e-07 Score=75.00 Aligned_cols=65 Identities=18% Similarity=0.215 Sum_probs=58.0
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhh
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQL 191 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~ 191 (241)
..++|+|.-||.|..++.++.+++. |++||++|.-+..|+.|++-+|++ +|.|++||+.+.+..+
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~---VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~l 159 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPY---VIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKL 159 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCe---EEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHH
Confidence 3588999999999999999999765 999999999999999999999985 6999999999865544
No 213
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.32 E-value=4.6e-06 Score=82.29 Aligned_cols=80 Identities=23% Similarity=0.216 Sum_probs=61.8
Q ss_pred CCcEEEEcCCccHHHHHHHHHC----C-------------------------------------CCcEEEEEeCCHHHHH
Q 026219 125 LPLMVDIGSGSGRFLIWLARRN----P-------------------------------------DSGNYLGLEIRQKLVK 163 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~----p-------------------------------------~~~~v~giDis~~~v~ 163 (241)
+..++|.+||+|.+++..+... | ....++|+|+++.+++
T Consensus 191 ~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~ 270 (702)
T PRK11783 191 GTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQ 270 (702)
T ss_pred CCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHH
Confidence 5789999999999999887531 1 0136999999999999
Q ss_pred HHHHHHHHhCCC-CEEEEEccccchHHhhccCCCCcEeEEEEeCC
Q 026219 164 RAEFWVQELALS-NIHFLFANASVSFKQLVSSYPGPLMLVSILCP 207 (241)
Q Consensus 164 ~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~~~ 207 (241)
.|++|++..|+. .+++.++|+.+.. .....+++|.|+.+.|
T Consensus 271 ~A~~N~~~~g~~~~i~~~~~D~~~~~---~~~~~~~~d~IvtNPP 312 (702)
T PRK11783 271 AARKNARRAGVAELITFEVKDVADLK---NPLPKGPTGLVISNPP 312 (702)
T ss_pred HHHHHHHHcCCCcceEEEeCChhhcc---cccccCCCCEEEECCC
Confidence 999999999985 4899999997621 1111256898888854
No 214
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.32 E-value=1.1e-06 Score=72.14 Aligned_cols=105 Identities=16% Similarity=0.207 Sum_probs=65.9
Q ss_pred CCCcEEEEcCCccHHHHHHHHHC-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccch--HHhhccC---CCC
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRN-PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVS--FKQLVSS---YPG 197 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~-p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~--~~~~~~~---~~~ 197 (241)
++.++||+||++|.++..+.++. +. +.|+|+|+.+. ...+++.++++|+.+. ...+... ...
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~-~~v~avDl~~~-----------~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~ 90 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPA-GRVVAVDLGPM-----------DPLQNVSFIQGDITNPENIKDIRKLLPESGE 90 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTE-EEEEEEESSST-----------GS-TTEEBTTGGGEEEEHSHHGGGSHGTTTC
T ss_pred cccEEEEcCCcccceeeeeeeccccc-ceEEEEecccc-----------ccccceeeeecccchhhHHHhhhhhcccccc
Confidence 46899999999999999999987 44 79999999987 2346788888888652 1222221 125
Q ss_pred cEeEEEEeCCC----CchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 198 PLMLVSILCPD----PHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 198 ~~d~V~~~~~~----~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
.+|+|+..... .+..+.. ....+....+.-+...|+|||.+++
T Consensus 91 ~~dlv~~D~~~~~~g~~~~d~~-~~~~l~~~~l~~a~~~L~~gG~~v~ 137 (181)
T PF01728_consen 91 KFDLVLSDMAPNVSGDRNIDEF-ISIRLILSQLLLALELLKPGGTFVI 137 (181)
T ss_dssp SESEEEE-------SSHHSSHH-HHHHHHHHHHHHHHHHHCTTEEEEE
T ss_pred CcceeccccccCCCCchhhHHH-HHHHHHHHHHHHHHhhhcCCCEEEE
Confidence 79988765411 1111111 1112233455566788999997763
No 215
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.32 E-value=3.5e-06 Score=74.95 Aligned_cols=115 Identities=18% Similarity=0.180 Sum_probs=72.9
Q ss_pred CCCCcEEEEcCCccHHHHHHHHH-------CCCCcEEEEEeCCHHHHHHHHHHHHHhCC--CCEEEEEccccchHHhhcc
Q 026219 123 PTLPLMVDIGSGSGRFLIWLARR-------NPDSGNYLGLEIRQKLVKRAEFWVQELAL--SNIHFLFANASVSFKQLVS 193 (241)
Q Consensus 123 ~~~~~VLDIGCGtG~~~~~la~~-------~p~~~~v~giDis~~~v~~a~~~~~~~~l--~ni~~~~~D~~~~~~~~~~ 193 (241)
..+.+|+|-+||+|.++..+.+. .+. ..++|+|+++.++..|+-++.-.+. .+..+..+|..... ..
T Consensus 45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~-~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~---~~ 120 (311)
T PF02384_consen 45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKE-INIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLEND---KF 120 (311)
T ss_dssp -TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCC-EEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSH---SC
T ss_pred cccceeechhhhHHHHHHHHHHhhccccccccc-ceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccc---cc
Confidence 34568999999999999998874 255 6899999999999999988766554 23568888876421 10
Q ss_pred CCCCcEeEEEEeCCCCch--hhhhh-----------hcccchHHHHHHHHhccccCCEEEc
Q 026219 194 SYPGPLMLVSILCPDPHF--KKKHH-----------KRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 194 ~~~~~~d~V~~~~~~~~~--~~~~~-----------~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
.....+|.|+.+.|--.. ..... ......-.+++.+.+.|++||++.+
T Consensus 121 ~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~ 181 (311)
T PF02384_consen 121 IKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAI 181 (311)
T ss_dssp TST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEE
T ss_pred ccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeE
Confidence 013679999888654211 00000 0011223688999999999998653
No 216
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.30 E-value=1.7e-06 Score=76.39 Aligned_cols=106 Identities=17% Similarity=0.212 Sum_probs=67.2
Q ss_pred CCcEEEEcCCccH----HHHHHHHHC---CCCcEEEEEeCCHHHHHHHHHHH------------------HH-----hC-
Q 026219 125 LPLMVDIGSGSGR----FLIWLARRN---PDSGNYLGLEIRQKLVKRAEFWV------------------QE-----LA- 173 (241)
Q Consensus 125 ~~~VLDIGCGtG~----~~~~la~~~---p~~~~v~giDis~~~v~~a~~~~------------------~~-----~~- 173 (241)
.-+|...||+||. +++.+.+.. +...+|+|+|||+.+++.|++-. .+ .+
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 3699999999994 444444533 21268999999999999998631 00 00
Q ss_pred ------C-CCEEEEEccccchHHhhccC-CCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 174 ------L-SNIHFLFANASVSFKQLVSS-YPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 174 ------l-~ni~~~~~D~~~~~~~~~~~-~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
+ ..|+|.+.|+.+ .+. +.+.||+|++.....++... ....+++.+++.|+|||.|++
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~-----~~~~~~~~fD~I~cRNvliyF~~~------~~~~vl~~l~~~L~pgG~L~l 260 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLA-----KQWAVPGPFDAIFCRNVMIYFDKT------TQERILRRFVPLLKPDGLLFA 260 (287)
T ss_pred EEEChHHHccCEEEcccCCC-----CCCccCCCcceeeHhhHHhcCCHH------HHHHHHHHHHHHhCCCcEEEE
Confidence 1 235666666654 111 24779988652211111110 125999999999999999875
No 217
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.30 E-value=3e-06 Score=80.88 Aligned_cols=83 Identities=25% Similarity=0.279 Sum_probs=58.0
Q ss_pred CCcEEEEcCCccHHHHHHHHHCCC-------CcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCC
Q 026219 125 LPLMVDIGSGSGRFLIWLARRNPD-------SGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPG 197 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~p~-------~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~ 197 (241)
..+|||.|||+|.++..++++.+. ...++|+|+++.+++.++.++...+.-.+.+...|.............+
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~ 111 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYLD 111 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccccC
Confidence 468999999999999999876531 1468999999999999999887665224566666654311001111235
Q ss_pred cEeEEEEeCC
Q 026219 198 PLMLVSILCP 207 (241)
Q Consensus 198 ~~d~V~~~~~ 207 (241)
.||.|+.+.|
T Consensus 112 ~fD~IIgNPP 121 (524)
T TIGR02987 112 LFDIVITNPP 121 (524)
T ss_pred cccEEEeCCC
Confidence 7899888765
No 218
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.27 E-value=2.3e-06 Score=72.22 Aligned_cols=105 Identities=17% Similarity=0.116 Sum_probs=68.6
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS 203 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~ 203 (241)
...+.||.|+|.|..+..+.-..-+ +|--+|.++..++.|++.+...+..-.++++....++ .+ .++.+|+|+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~--~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f----~P-~~~~YDlIW 127 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFD--EVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDF----TP-EEGKYDLIW 127 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-S--EEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG---------TT-EEEEE
T ss_pred CcceEEecccccchhHHHHHHHhcC--EeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhc----cC-CCCcEeEEE
Confidence 4578999999999999876443323 6999999999999998765432222356777777653 21 247899999
Q ss_pred EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
+....-|..+.. .-++|+++...|+|||.|++
T Consensus 128 ~QW~lghLTD~d------lv~fL~RCk~~L~~~G~Ivv 159 (218)
T PF05891_consen 128 IQWCLGHLTDED------LVAFLKRCKQALKPNGVIVV 159 (218)
T ss_dssp EES-GGGS-HHH------HHHHHHHHHHHEEEEEEEEE
T ss_pred ehHhhccCCHHH------HHHHHHHHHHhCcCCcEEEE
Confidence 876443322211 13899999999999999985
No 219
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.27 E-value=1.7e-05 Score=67.21 Aligned_cols=104 Identities=13% Similarity=0.132 Sum_probs=73.7
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS 203 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~ 203 (241)
++.+||-+|.++|.+..+++.-...++.|+|||.|+....-.-.-+++. +|+-.+..|+.... -....-+.+|.|+
T Consensus 73 ~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R--~NIiPIl~DAr~P~--~Y~~lv~~VDvI~ 148 (229)
T PF01269_consen 73 PGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR--PNIIPILEDARHPE--KYRMLVEMVDVIF 148 (229)
T ss_dssp TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS--TTEEEEES-TTSGG--GGTTTS--EEEEE
T ss_pred CCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC--CceeeeeccCCChH--HhhcccccccEEE
Confidence 4789999999999999999998753389999999997655554444433 68999999997531 1222235789888
Q ss_pred EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
.....| .+. +-++.++...||+||.++|
T Consensus 149 ~DVaQp--~Qa--------~I~~~Na~~fLk~gG~~~i 176 (229)
T PF01269_consen 149 QDVAQP--DQA--------RIAALNARHFLKPGGHLII 176 (229)
T ss_dssp EE-SST--THH--------HHHHHHHHHHEEEEEEEEE
T ss_pred ecCCCh--HHH--------HHHHHHHHhhccCCcEEEE
Confidence 777655 222 3778888899999998875
No 220
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.26 E-value=1.8e-05 Score=59.42 Aligned_cols=101 Identities=23% Similarity=0.375 Sum_probs=64.4
Q ss_pred EEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCC-CcEeEEEEeC
Q 026219 128 MVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYP-GPLMLVSILC 206 (241)
Q Consensus 128 VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~-~~~d~V~~~~ 206 (241)
++|+|||+|... .+.+..+....++|+|+++.++..++......+..++.+..+|.... ..+..+ ..+|.+ ...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~~-~~~ 126 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGG---VLPFEDSASFDLV-ISL 126 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccC---CCCCCCCCceeEE-eee
Confidence 999999999977 44444433137999999999999955544331111167888877541 112123 368877 333
Q ss_pred CCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 207 PDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 207 ~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
...+... ....+.++.+.|+|+|.+++
T Consensus 127 ~~~~~~~--------~~~~~~~~~~~l~~~g~~~~ 153 (257)
T COG0500 127 LVLHLLP--------PAKALRELLRVLKPGGRLVL 153 (257)
T ss_pred eehhcCC--------HHHHHHHHHHhcCCCcEEEE
Confidence 2211100 14899999999999998764
No 221
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.21 E-value=1.2e-05 Score=73.10 Aligned_cols=110 Identities=16% Similarity=0.086 Sum_probs=77.6
Q ss_pred CCcEEEEcCCccHHHHHHHHHCCCC-------------------------------c-------EEEEEeCCHHHHHHHH
Q 026219 125 LPLMVDIGSGSGRFLIWLARRNPDS-------------------------------G-------NYLGLEIRQKLVKRAE 166 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~p~~-------------------------------~-------~v~giDis~~~v~~a~ 166 (241)
+..++|--||+|.+++..|...++. . .++|+|+++.+++.|+
T Consensus 192 ~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak 271 (381)
T COG0116 192 DEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAK 271 (381)
T ss_pred CCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHH
Confidence 4679999999999999988876420 1 3779999999999999
Q ss_pred HHHHHhCCC-CEEEEEccccchHHhhccCCCCcEeEEEEeCCCCchhhhhhh--cccchHHHHHHHHhccccCCEEEc
Q 026219 167 FWVQELALS-NIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHK--RRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 167 ~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~~~~~~~~~~~~~--~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
.|+++.|+. -|+|.++|+.. +..+...+|.|+.|.|- ...-..+ -..++..+.+.+.+.++--+..+|
T Consensus 272 ~NA~~AGv~d~I~f~~~d~~~-----l~~~~~~~gvvI~NPPY--GeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~ 342 (381)
T COG0116 272 ANARAAGVGDLIEFKQADATD-----LKEPLEEYGVVISNPPY--GERLGSEALVAKLYREFGRTLKRLLAGWSRYVF 342 (381)
T ss_pred HHHHhcCCCceEEEEEcchhh-----CCCCCCcCCEEEeCCCc--chhcCChhhHHHHHHHHHHHHHHHhcCCceEEE
Confidence 999999985 59999999986 22222677888777542 2111101 112556777777777776555543
No 222
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.19 E-value=1.7e-05 Score=66.86 Aligned_cols=111 Identities=16% Similarity=0.183 Sum_probs=62.9
Q ss_pred hHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHH-------hCC--CCEEEEEccccc
Q 026219 116 WSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQE-------LAL--SNIHFLFANASV 186 (241)
Q Consensus 116 ~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~-------~~l--~ni~~~~~D~~~ 186 (241)
+.+...-.++.+++|||||.|...+..+-..+- ...+|||+.+...+.|+...+. .|. ..+++.++|+.+
T Consensus 34 il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~-~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~ 112 (205)
T PF08123_consen 34 ILDELNLTPDDVFYDLGSGVGNVVFQAALQTGC-KKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLD 112 (205)
T ss_dssp HHHHTT--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTT
T ss_pred HHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCC-cEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccc
Confidence 334443345789999999999999998877654 4699999999998888764432 233 358889999876
Q ss_pred h--HHhhccCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 187 S--FKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 187 ~--~~~~~~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
. ...++ ..-|+|+++..- ..++ + ...|.+....||+|-+|+
T Consensus 113 ~~~~~~~~----s~AdvVf~Nn~~-F~~~-------l-~~~L~~~~~~lk~G~~II 155 (205)
T PF08123_consen 113 PDFVKDIW----SDADVVFVNNTC-FDPD-------L-NLALAELLLELKPGARII 155 (205)
T ss_dssp HHHHHHHG----HC-SEEEE--TT-T-HH-------H-HHHHHHHHTTS-TT-EEE
T ss_pred cHhHhhhh----cCCCEEEEeccc-cCHH-------H-HHHHHHHHhcCCCCCEEE
Confidence 3 12222 224666665321 0000 1 244566777889987764
No 223
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.15 E-value=9.8e-07 Score=82.25 Aligned_cols=95 Identities=18% Similarity=0.207 Sum_probs=61.2
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEE-----eCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCc
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGL-----EIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGP 198 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~gi-----Dis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~ 198 (241)
.-.++||||||+|+++..|..+ + |+.+ |..+.+++.|.+ .|++-+ .+-+ ....+++|+..
T Consensus 117 ~iR~~LDvGcG~aSF~a~l~~r--~---V~t~s~a~~d~~~~qvqfale----RGvpa~---~~~~---~s~rLPfp~~~ 181 (506)
T PF03141_consen 117 GIRTALDVGCGVASFGAYLLER--N---VTTMSFAPNDEHEAQVQFALE----RGVPAM---IGVL---GSQRLPFPSNA 181 (506)
T ss_pred ceEEEEeccceeehhHHHHhhC--C---ceEEEcccccCCchhhhhhhh----cCcchh---hhhh---ccccccCCccc
Confidence 3468999999999999999887 3 3333 334456666644 254321 1111 01235667899
Q ss_pred EeEEEE-eCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 199 LMLVSI-LCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 199 ~d~V~~-~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
||+|-. .+-.+|.... ..+|-++.|+|+|||.+++
T Consensus 182 fDmvHcsrc~i~W~~~~--------g~~l~evdRvLRpGGyfv~ 217 (506)
T PF03141_consen 182 FDMVHCSRCLIPWHPND--------GFLLFEVDRVLRPGGYFVL 217 (506)
T ss_pred hhhhhcccccccchhcc--------cceeehhhhhhccCceEEe
Confidence 998843 3334555432 2678889999999999864
No 224
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.10 E-value=4.5e-05 Score=68.80 Aligned_cols=109 Identities=15% Similarity=0.193 Sum_probs=86.0
Q ss_pred CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHH--HHHHhC---C--CCEEEEEccccchHHhhccCCCC
Q 026219 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEF--WVQELA---L--SNIHFLFANASVSFKQLVSSYPG 197 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~--~~~~~~---l--~ni~~~~~D~~~~~~~~~~~~~~ 197 (241)
..++|=+|-|-|--+..+.+ +|+..+++-+|++|+|++.++. .+++.+ . ++++++..|+.+++..- ..
T Consensus 290 a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a----~~ 364 (508)
T COG4262 290 ARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTA----AD 364 (508)
T ss_pred cceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhh----cc
Confidence 57899999999999999877 6754799999999999999984 333321 2 46899999998765443 34
Q ss_pred cEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 198 PLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 198 ~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
.||.|++.++||.-.. -.|....++...+.+.|+++|.+++
T Consensus 365 ~fD~vIVDl~DP~tps---~~rlYS~eFY~ll~~~l~e~Gl~Vv 405 (508)
T COG4262 365 MFDVVIVDLPDPSTPS---IGRLYSVEFYRLLSRHLAETGLMVV 405 (508)
T ss_pred cccEEEEeCCCCCCcc---hhhhhhHHHHHHHHHhcCcCceEEE
Confidence 7899999999984332 3466778999999999999999874
No 225
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.10 E-value=4e-06 Score=69.12 Aligned_cols=99 Identities=18% Similarity=0.221 Sum_probs=71.9
Q ss_pred CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEE
Q 026219 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSI 204 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~ 204 (241)
..++.|+|.|+|.+++..++. .+ +|++||.+|.....|++|++-.|..|++++.+|+.+ .++ ..-|.|+.
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~-A~--rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~-----y~f--e~ADvvic 102 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHA-AE--RVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARD-----YDF--ENADVVIC 102 (252)
T ss_pred hhceeeccCCcchHHHHHHhh-hc--eEEEEecCcHHHHHhhhcCCCCCCcceEEEeccccc-----ccc--cccceeHH
Confidence 378999999999999988886 44 799999999999999999877788899999999986 221 23455543
Q ss_pred eCCCCc-hhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 205 LCPDPH-FKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 205 ~~~~~~-~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
-..|.- ..+. +-..++.+...||-+|+++
T Consensus 103 EmlDTaLi~E~-------qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 103 EMLDTALIEEK-------QVPVINAVLEFLRYDPTII 132 (252)
T ss_pred HHhhHHhhccc-------ccHHHHHHHHHhhcCCccc
Confidence 332210 0000 1266777777888888764
No 226
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.09 E-value=3.3e-06 Score=71.68 Aligned_cols=100 Identities=12% Similarity=0.113 Sum_probs=73.8
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS 203 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~ 203 (241)
..+.++|||||-|....++..+.- .+++-+|.|-.|++.++.. +..++ ....+++|-+. +++.+.++|+|+
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~v--ekli~~DtS~~M~~s~~~~-qdp~i-~~~~~v~DEE~-----Ldf~ens~DLii 142 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGV--EKLIMMDTSYDMIKSCRDA-QDPSI-ETSYFVGDEEF-----LDFKENSVDLII 142 (325)
T ss_pred hCcceeecccchhhhhHHHHhcch--hheeeeecchHHHHHhhcc-CCCce-EEEEEecchhc-----ccccccchhhhh
Confidence 357899999999999999988764 4799999999999998652 11222 24556677643 444578999887
Q ss_pred EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
......|..+- ...+..+...|||+|.|+
T Consensus 143 sSlslHW~NdL--------Pg~m~~ck~~lKPDg~Fi 171 (325)
T KOG2940|consen 143 SSLSLHWTNDL--------PGSMIQCKLALKPDGLFI 171 (325)
T ss_pred hhhhhhhhccC--------chHHHHHHHhcCCCccch
Confidence 66555555433 378888999999999875
No 227
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=98.08 E-value=2.4e-05 Score=71.48 Aligned_cols=115 Identities=17% Similarity=0.169 Sum_probs=89.0
Q ss_pred CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219 123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV 202 (241)
Q Consensus 123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V 202 (241)
.++.+|||.++..|.-+.++|....+.+.|++.|.+.+.+.....++.+.|..|..+...|..+.-... ++++||.|
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~---~~~~fDRV 316 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKE---FPGSFDRV 316 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccc---cCccccee
Confidence 358999999999999999999987776899999999999999999999999999888999987532222 34589998
Q ss_pred EEeCCCC------------chhh--hhhhcccchHHHHHHHHhccccCCEEE
Q 026219 203 SILCPDP------------HFKK--KHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 203 ~~~~~~~------------~~~~--~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
.+.-|-. +-+. .-.+.-.+++++|.....++++||+|+
T Consensus 317 LLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLV 368 (460)
T KOG1122|consen 317 LLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLV 368 (460)
T ss_pred eecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEE
Confidence 7654321 0000 001122377899999999999999886
No 228
>PRK00536 speE spermidine synthase; Provisional
Probab=98.07 E-value=4.7e-05 Score=66.43 Aligned_cols=97 Identities=9% Similarity=-0.019 Sum_probs=72.1
Q ss_pred hcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHh----CCCCEEEEEccccchHHhhccCC
Q 026219 120 YKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQEL----ALSNIHFLFANASVSFKQLVSSY 195 (241)
Q Consensus 120 ~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~----~l~ni~~~~~D~~~~~~~~~~~~ 195 (241)
..-|+.++||=||-|-|..+..+.+. +. +|+-|||++++++.+++.+-.. .-++++++. .+ .+..
T Consensus 68 ~~h~~pk~VLIiGGGDGg~~REvLkh-~~--~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~-------~~~~ 136 (262)
T PRK00536 68 CTKKELKEVLIVDGFDLELAHQLFKY-DT--HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QL-------LDLD 136 (262)
T ss_pred hhCCCCCeEEEEcCCchHHHHHHHCc-CC--eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hh-------hhcc
Confidence 33455689999999999999999996 33 8999999999999999844321 224666664 11 1112
Q ss_pred CCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 196 PGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 196 ~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
.+.||+|++....+ +.+.+.+.+.|+|||.++
T Consensus 137 ~~~fDVIIvDs~~~-------------~~fy~~~~~~L~~~Gi~v 168 (262)
T PRK00536 137 IKKYDLIICLQEPD-------------IHKIDGLKRMLKEDGVFI 168 (262)
T ss_pred CCcCCEEEEcCCCC-------------hHHHHHHHHhcCCCcEEE
Confidence 36799888764322 388899999999999986
No 229
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.04 E-value=2.3e-05 Score=61.94 Aligned_cols=62 Identities=29% Similarity=0.404 Sum_probs=50.9
Q ss_pred CCCcEEEEcCCccHHHHHHHHHC----CCCcEEEEEeCCHHHHHHHHHHHHHhC--C-CCEEEEEccccc
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRN----PDSGNYLGLEIRQKLVKRAEFWVQELA--L-SNIHFLFANASV 186 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~----p~~~~v~giDis~~~v~~a~~~~~~~~--l-~ni~~~~~D~~~ 186 (241)
+...|+|+|||.|.++..++..+ ++ .+|+|||.++..++.++++.++.+ . .++++..++..+
T Consensus 25 ~~~~vvD~GsG~GyLs~~La~~l~~~~~~-~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 93 (141)
T PF13679_consen 25 RCITVVDLGSGKGYLSRALAHLLCNSSPN-LRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIAD 93 (141)
T ss_pred CCCEEEEeCCChhHHHHHHHHHHHhcCCC-CeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhh
Confidence 46789999999999999999921 55 799999999999999999988776 4 456777766643
No 230
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.04 E-value=8.9e-06 Score=74.12 Aligned_cols=101 Identities=21% Similarity=0.196 Sum_probs=75.0
Q ss_pred CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCC-EEEEEccccchHHhhccCCCCcEeEEE
Q 026219 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IHFLFANASVSFKQLVSSYPGPLMLVS 203 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~n-i~~~~~D~~~~~~~~~~~~~~~~d~V~ 203 (241)
+..++|+|||.|.....++.- .. +.++|+|.++..+.++.......++++ ..++.+|+.+ .++.+..+|.+.
T Consensus 111 ~~~~~~~~~g~~~~~~~i~~f-~~-~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~-----~~fedn~fd~v~ 183 (364)
T KOG1269|consen 111 GSKVLDVGTGVGGPSRYIAVF-KK-AGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGK-----MPFEDNTFDGVR 183 (364)
T ss_pred cccccccCcCcCchhHHHHHh-cc-CCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhc-----CCCCccccCcEE
Confidence 458999999999999999885 44 689999999999999988877777654 4457778765 233467777764
Q ss_pred EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
.+-.-.+..+. ..++++++|+++|||.++
T Consensus 184 ~ld~~~~~~~~--------~~~y~Ei~rv~kpGG~~i 212 (364)
T KOG1269|consen 184 FLEVVCHAPDL--------EKVYAEIYRVLKPGGLFI 212 (364)
T ss_pred EEeecccCCcH--------HHHHHHHhcccCCCceEE
Confidence 43222111111 499999999999999876
No 231
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.03 E-value=2.2e-05 Score=68.75 Aligned_cols=101 Identities=18% Similarity=0.214 Sum_probs=68.4
Q ss_pred CCcEEEEcCCcc----HHHHHHHHHCCC----CcEEEEEeCCHHHHHHHHHH-----HHHhCC-----------------
Q 026219 125 LPLMVDIGSGSG----RFLIWLARRNPD----SGNYLGLEIRQKLVKRAEFW-----VQELAL----------------- 174 (241)
Q Consensus 125 ~~~VLDIGCGtG----~~~~~la~~~p~----~~~v~giDis~~~v~~a~~~-----~~~~~l----------------- 174 (241)
.-+|.-+||+|| ++++.+.+.++. ..+|+|+|||..+++.|+.= ....++
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 578999999999 566666676642 37899999999999999741 110111
Q ss_pred -------CCEEEEEccccchHHhhccC-CCCcEeEEEE----eCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 175 -------SNIHFLFANASVSFKQLVSS-YPGPLMLVSI----LCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 175 -------~ni~~~~~D~~~~~~~~~~~-~~~~~d~V~~----~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
++|.|...|+.+ +. +.+.||+|++ .|-+.. .+..+++.++..|+|||.+++
T Consensus 177 ~v~~~ir~~V~F~~~NLl~------~~~~~~~fD~IfCRNVLIYFd~~----------~q~~il~~f~~~L~~gG~Lfl 239 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLD------DSPFLGKFDLIFCRNVLIYFDEE----------TQERILRRFADSLKPGGLLFL 239 (268)
T ss_pred EEChHHhcccEEeecCCCC------CccccCCCCEEEEcceEEeeCHH----------HHHHHHHHHHHHhCCCCEEEE
Confidence 124444555543 11 3567888743 333321 235999999999999999985
No 232
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.01 E-value=2e-05 Score=68.39 Aligned_cols=60 Identities=18% Similarity=0.327 Sum_probs=51.2
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccc
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASV 186 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~ 186 (241)
+...|||||-|||+++..|.+.. .+|+++|+++.|+....++.+.... ..++++++|+..
T Consensus 58 ~tD~VLEvGPGTGnLT~~lLe~~---kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK 118 (315)
T KOG0820|consen 58 PTDVVLEVGPGTGNLTVKLLEAG---KKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLK 118 (315)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhc---CeEEEEecCcHHHHHHHHHhcCCCccceeeEEeccccc
Confidence 46899999999999999999984 4699999999999999888763332 258999999986
No 233
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.97 E-value=0.0001 Score=65.66 Aligned_cols=89 Identities=11% Similarity=0.083 Sum_probs=67.6
Q ss_pred hHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCC
Q 026219 116 WSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSY 195 (241)
Q Consensus 116 ~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~ 195 (241)
..+.+...++..++|.=+|.|..+..+++..++ +.|+|+|.++.+++.++++++..+ .++.+++++..+....+....
T Consensus 12 vl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~L~~~~-~R~~~i~~nF~~l~~~l~~~~ 89 (305)
T TIGR00006 12 VVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKERLSDFE-GRVVLIHDNFANFFEHLDELL 89 (305)
T ss_pred HHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHhhcC-CcEEEEeCCHHHHHHHHHhcC
Confidence 344444334679999999999999999998877 899999999999999999887543 479999999876433322212
Q ss_pred CCcEeEEEEeC
Q 026219 196 PGPLMLVSILC 206 (241)
Q Consensus 196 ~~~~d~V~~~~ 206 (241)
...+|.|++..
T Consensus 90 ~~~vDgIl~DL 100 (305)
T TIGR00006 90 VTKIDGILVDL 100 (305)
T ss_pred CCcccEEEEec
Confidence 35688876653
No 234
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.96 E-value=5.3e-05 Score=63.58 Aligned_cols=106 Identities=16% Similarity=0.270 Sum_probs=70.7
Q ss_pred CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccc--hHHhhccCCC-CcEeE
Q 026219 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV--SFKQLVSSYP-GPLML 201 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~--~~~~~~~~~~-~~~d~ 201 (241)
+.+|+|||+-.|.++..+++.......|+|||+.|- ....++.++++|+++ .+..+....+ ..+|+
T Consensus 46 ~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~-----------~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~Dv 114 (205)
T COG0293 46 GMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM-----------KPIPGVIFLQGDITDEDTLEKLLEALGGAPVDV 114 (205)
T ss_pred CCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc-----------ccCCCceEEeeeccCccHHHHHHHHcCCCCcce
Confidence 789999999999999999998755367999999884 134679999999975 2333332222 33687
Q ss_pred EEEeCCC-C--chhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 202 VSILCPD-P--HFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 202 V~~~~~~-~--~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
|+..... . .....+.+...+....++-+..+|+|||.+++
T Consensus 115 V~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~ 157 (205)
T COG0293 115 VLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVA 157 (205)
T ss_pred EEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEE
Confidence 7654311 0 00011112222456777888899999998863
No 235
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.94 E-value=4.3e-05 Score=60.40 Aligned_cols=88 Identities=13% Similarity=0.275 Sum_probs=58.8
Q ss_pred EEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCCCcEeEEEEeCCC-CchhhhhhhcccchHHHHHH
Q 026219 151 NYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYPGPLMLVSILCPD-PHFKKKHHKRRVVQKPLVDS 228 (241)
Q Consensus 151 ~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~~~~-~~~~~~~~~~r~~~~~ll~~ 228 (241)
+|+|+||.+++++.+++++++.++. +++++..+=.. ++..++ ++.+|.+++|+.- |..++.-..+....-..++.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~-l~~~i~--~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~ 77 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHEN-LDEYIP--EGPVDAAIFNLGYLPGGDKSITTKPETTLKALEA 77 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGG-GGGT----S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHH-HHhhCc--cCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHH
Confidence 5899999999999999999998874 59998865543 333332 2589999887642 32333333333445689999
Q ss_pred HHhccccCCEEEc
Q 026219 229 IIDYLMPGGKVYF 241 (241)
Q Consensus 229 l~r~LkpGG~l~~ 241 (241)
+.++|+|||.+.+
T Consensus 78 al~lL~~gG~i~i 90 (140)
T PF06962_consen 78 ALELLKPGGIITI 90 (140)
T ss_dssp HHHHEEEEEEEEE
T ss_pred HHHhhccCCEEEE
Confidence 9999999999875
No 236
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.92 E-value=5.8e-05 Score=63.61 Aligned_cols=71 Identities=20% Similarity=0.360 Sum_probs=55.0
Q ss_pred EEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCCCc-EeEEEEe
Q 026219 128 MVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYPGP-LMLVSIL 205 (241)
Q Consensus 128 VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~-~d~V~~~ 205 (241)
|.||||-.|.+.+.|.+++.- ..++++|+++.-++.|+++++..++. +++++.+|..+.++ ++. +|.|++.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~-~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~------~~e~~d~ivIA 73 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKA-PKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLK------PGEDVDTIVIA 73 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSE-EEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--------GGG---EEEEE
T ss_pred CceeccchhHHHHHHHhcCCC-CEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccC------CCCCCCEEEEe
Confidence 689999999999999999876 68999999999999999999999974 69999999876321 233 6766653
No 237
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.88 E-value=7.2e-05 Score=63.03 Aligned_cols=103 Identities=15% Similarity=0.187 Sum_probs=72.5
Q ss_pred CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219 123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV 202 (241)
Q Consensus 123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V 202 (241)
.++.+||+||-|-|.....+.++.|. +-+-||..|+++++.+.+.=... .|+.++.+-=.+.++.+ +|+.||.|
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~--~H~IiE~hp~V~krmr~~gw~ek-~nViil~g~WeDvl~~L---~d~~FDGI 173 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPD--EHWIIEAHPDVLKRMRDWGWREK-ENVIILEGRWEDVLNTL---PDKHFDGI 173 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCc--ceEEEecCHHHHHHHHhcccccc-cceEEEecchHhhhccc---cccCccee
Confidence 35899999999999999999887776 67789999999998876432111 36777765444333333 46779987
Q ss_pred EEe-CCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 203 SIL-CPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 203 ~~~-~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
... |.. ...+- ..+.+.+.|+|||+|.+-
T Consensus 174 ~yDTy~e-~yEdl--------~~~hqh~~rLLkP~gv~S 203 (271)
T KOG1709|consen 174 YYDTYSE-LYEDL--------RHFHQHVVRLLKPEGVFS 203 (271)
T ss_pred Eeechhh-HHHHH--------HHHHHHHhhhcCCCceEE
Confidence 643 322 22111 377889999999999874
No 238
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.87 E-value=0.00014 Score=60.63 Aligned_cols=104 Identities=14% Similarity=0.134 Sum_probs=79.0
Q ss_pred CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219 123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV 202 (241)
Q Consensus 123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V 202 (241)
.++.+||=+|..+|.+..+++.-.++ +.++|||.|+.+....-..+++. +|+-.+..|+.... -....-+.+|+|
T Consensus 75 ~~g~~VLYLGAasGTTvSHVSDIv~~-G~iYaVEfs~R~~reLl~~a~~R--~Ni~PIL~DA~~P~--~Y~~~Ve~VDvi 149 (231)
T COG1889 75 KEGSKVLYLGAASGTTVSHVSDIVGE-GRIYAVEFSPRPMRELLDVAEKR--PNIIPILEDARKPE--KYRHLVEKVDVI 149 (231)
T ss_pred CCCCEEEEeeccCCCcHhHHHhccCC-CcEEEEEecchhHHHHHHHHHhC--CCceeeecccCCcH--HhhhhcccccEE
Confidence 45789999999999999999998886 89999999998777666655543 68989999997521 112223568888
Q ss_pred EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
+.....|.. . +-+..++...||+||.+++
T Consensus 150 y~DVAQp~Q--a--------~I~~~Na~~FLk~~G~~~i 178 (231)
T COG1889 150 YQDVAQPNQ--A--------EILADNAEFFLKKGGYVVI 178 (231)
T ss_pred EEecCCchH--H--------HHHHHHHHHhcccCCeEEE
Confidence 777766532 2 3778888999999997654
No 239
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.81 E-value=7.4e-05 Score=65.13 Aligned_cols=58 Identities=19% Similarity=0.252 Sum_probs=50.0
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccc
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV 186 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~ 186 (241)
++..|||||.|+|.++..|.+.. .+++++|+++.+++..+++.. ..+|++++.+|+.+
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~--~~~~~~vi~~D~l~ 87 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFA--SNPNVEVINGDFLK 87 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCT--TCSSEEEEES-TTT
T ss_pred CCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhh--hcccceeeecchhc
Confidence 57899999999999999999985 379999999999999887654 33689999999987
No 240
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.81 E-value=8e-05 Score=66.05 Aligned_cols=80 Identities=16% Similarity=0.154 Sum_probs=48.0
Q ss_pred CCcEEEEcCCcc-HHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHh-CCC-CEEEEEcccc-chHHhhccCCCCcEe
Q 026219 125 LPLMVDIGSGSG-RFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQEL-ALS-NIHFLFANAS-VSFKQLVSSYPGPLM 200 (241)
Q Consensus 125 ~~~VLDIGCGtG-~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~-~l~-ni~~~~~D~~-~~~~~~~~~~~~~~d 200 (241)
.-++||||+|.. .+.+.-++.+ + ++++|.||++..++.|+++++++ ++. +|+++...-. ..++.+.. .+..||
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~-~-W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~-~~e~~d 179 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY-G-WSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQ-PNERFD 179 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT---S-EE
T ss_pred ceEeecCCccHHHHHHHHhhhhc-C-CeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhc-ccceee
Confidence 457999999976 5555555555 6 89999999999999999999998 774 6888765322 22222221 345788
Q ss_pred EEEEeCC
Q 026219 201 LVSILCP 207 (241)
Q Consensus 201 ~V~~~~~ 207 (241)
..+++.|
T Consensus 180 ftmCNPP 186 (299)
T PF05971_consen 180 FTMCNPP 186 (299)
T ss_dssp EEEE---
T ss_pred EEecCCc
Confidence 8777654
No 241
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.73 E-value=0.00024 Score=62.46 Aligned_cols=103 Identities=17% Similarity=0.212 Sum_probs=60.9
Q ss_pred CcEEEEcCCc-cHHHHHHHHHC-CCCcEEEEEeCCHHHHHHHHHHHH-HhCC-CCEEEEEccccchHHhhccCCCCcEeE
Q 026219 126 PLMVDIGSGS-GRFLIWLARRN-PDSGNYLGLEIRQKLVKRAEFWVQ-ELAL-SNIHFLFANASVSFKQLVSSYPGPLML 201 (241)
Q Consensus 126 ~~VLDIGCGt-G~~~~~la~~~-p~~~~v~giDis~~~v~~a~~~~~-~~~l-~ni~~~~~D~~~~~~~~~~~~~~~~d~ 201 (241)
.+|+=||||. -..++.++++. ++ ..|+++|+++++++.+++-++ ..++ .++.|+.+|+.+.... -..+|.
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~-~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~d-----l~~~Dv 195 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPG-ARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYD-----LKEYDV 195 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT---EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG---------SE
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccc-----cccCCE
Confidence 5899999995 45566666554 45 789999999999999999877 3455 4699999999752111 256888
Q ss_pred EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
|++.---..-+..+ +++++.+.+.++||..+++
T Consensus 196 V~lAalVg~~~e~K-------~~Il~~l~~~m~~ga~l~~ 228 (276)
T PF03059_consen 196 VFLAALVGMDAEPK-------EEILEHLAKHMAPGARLVV 228 (276)
T ss_dssp EEE-TT-S----SH-------HHHHHHHHHHS-TTSEEEE
T ss_pred EEEhhhcccccchH-------HHHHHHHHhhCCCCcEEEE
Confidence 77643211001111 4999999999999998863
No 242
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.71 E-value=0.00026 Score=62.22 Aligned_cols=48 Identities=19% Similarity=0.215 Sum_probs=40.7
Q ss_pred CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHh
Q 026219 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQEL 172 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~ 172 (241)
..+|||+|||+|..+..+.+.++...+++++|.|+.|++.++...+..
T Consensus 34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~ 81 (274)
T PF09243_consen 34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG 81 (274)
T ss_pred CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc
Confidence 468999999999988888777765468999999999999998876543
No 243
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.63 E-value=0.00028 Score=63.40 Aligned_cols=95 Identities=19% Similarity=0.288 Sum_probs=69.1
Q ss_pred CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEE
Q 026219 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSI 204 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~ 204 (241)
....+|+|.|.|..+..+...+|+ |-|++.+...+..++.... +.|+.+-+|.... . |.+ |+|++
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~---ik~infdlp~v~~~a~~~~----~gV~~v~gdmfq~----~--P~~--daI~m 242 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPH---IKGINFDLPFVLAAAPYLA----PGVEHVAGDMFQD----T--PKG--DAIWM 242 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCC---CceeecCHHHHHhhhhhhc----CCcceeccccccc----C--CCc--CeEEE
Confidence 378999999999999999998887 8899999888777766543 3477778888651 2 233 35544
Q ss_pred eCC-CCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 205 LCP-DPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 205 ~~~-~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
... ..|.++.- -++|++++..|+|||.|++
T Consensus 243 kWiLhdwtDedc-------vkiLknC~~sL~~~GkIiv 273 (342)
T KOG3178|consen 243 KWILHDWTDEDC-------VKILKNCKKSLPPGGKIIV 273 (342)
T ss_pred EeecccCChHHH-------HHHHHHHHHhCCCCCEEEE
Confidence 321 12443322 4999999999999999875
No 244
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.58 E-value=0.00037 Score=62.81 Aligned_cols=69 Identities=13% Similarity=0.005 Sum_probs=45.9
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS 203 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~ 203 (241)
++.++|||||++|.++..+.++ + ..|+|||..+- -... . ..+++..+..|.....+ ....+|.++
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~r--G-~~V~AVD~g~l-~~~L----~--~~~~V~h~~~d~fr~~p-----~~~~vDwvV 275 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVRR--G-MFVTAVDNGPM-AQSL----M--DTGQVEHLRADGFKFRP-----PRKNVDWLV 275 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHHc--C-CEEEEEechhc-CHhh----h--CCCCEEEEeccCcccCC-----CCCCCCEEE
Confidence 5789999999999999999998 4 58999997652 2221 1 22467777766654211 134566665
Q ss_pred EeCC
Q 026219 204 ILCP 207 (241)
Q Consensus 204 ~~~~ 207 (241)
....
T Consensus 276 cDmv 279 (357)
T PRK11760 276 CDMV 279 (357)
T ss_pred Eecc
Confidence 5443
No 245
>PRK10742 putative methyltransferase; Provisional
Probab=97.57 E-value=0.00084 Score=58.03 Aligned_cols=79 Identities=19% Similarity=0.128 Sum_probs=63.9
Q ss_pred CcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHh------C--C-CCEEEEEccccchHHhhccCCC
Q 026219 126 PLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQEL------A--L-SNIHFLFANASVSFKQLVSSYP 196 (241)
Q Consensus 126 ~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~------~--l-~ni~~~~~D~~~~~~~~~~~~~ 196 (241)
++|||+-+|+|..++.++.+ + +.|+++|.++.+....+++++.. + + .+++++++|+.+++... .
T Consensus 90 p~VLD~TAGlG~Da~~las~--G-~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~----~ 162 (250)
T PRK10742 90 PDVVDATAGLGRDAFVLASV--G-CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI----T 162 (250)
T ss_pred CEEEECCCCccHHHHHHHHc--C-CEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhC----C
Confidence 48999999999999999988 5 67999999999999999988874 2 2 57999999998866542 3
Q ss_pred CcEeEEEEeCCCCch
Q 026219 197 GPLMLVSILCPDPHF 211 (241)
Q Consensus 197 ~~~d~V~~~~~~~~~ 211 (241)
.++|+|++..+-|+.
T Consensus 163 ~~fDVVYlDPMfp~~ 177 (250)
T PRK10742 163 PRPQVVYLDPMFPHK 177 (250)
T ss_pred CCCcEEEECCCCCCC
Confidence 478998876554443
No 246
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.56 E-value=0.00019 Score=59.68 Aligned_cols=70 Identities=21% Similarity=0.227 Sum_probs=58.6
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS 203 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~ 203 (241)
.+++|||+|+|+|-.++..++... ..|+..|+.|..+..++-|++.++. ++.+...|... .+..+|++.
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA--~~v~a~d~~P~~~~ai~lNa~angv-~i~~~~~d~~g--------~~~~~Dl~L 147 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGA--AEVVAADIDPWLEQAIRLNAAANGV-SILFTHADLIG--------SPPAFDLLL 147 (218)
T ss_pred ccceeeecccccChHHHHHHHhhh--HHHHhcCCChHHHHHhhcchhhccc-eeEEeeccccC--------CCcceeEEE
Confidence 478999999999999999888765 4799999999999999999998885 78888888852 256788775
Q ss_pred E
Q 026219 204 I 204 (241)
Q Consensus 204 ~ 204 (241)
.
T Consensus 148 a 148 (218)
T COG3897 148 A 148 (218)
T ss_pred e
Confidence 4
No 247
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.44 E-value=0.00013 Score=63.44 Aligned_cols=110 Identities=15% Similarity=0.175 Sum_probs=64.1
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHh----------------C-----------C-C
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQEL----------------A-----------L-S 175 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~----------------~-----------l-~ 175 (241)
++.++||||||+-.+-..-+..+-. +|+..|.++..++..++++++. | + .
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~f~--~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEWFE--EIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGTEE--EEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHhhhhHHHhhc--ceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 4678999999996664443433322 5999999999988777765432 1 1 1
Q ss_pred CE-EEEEccccchHHhhccC---CCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 176 NI-HFLFANASVSFKQLVSS---YPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 176 ni-~~~~~D~~~~~~~~~~~---~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
.| +++.+|+++. ..++. .+..+|+|+..|-.... -+.+..+...++++.++|||||.|++
T Consensus 134 ~Vk~Vv~cDV~~~--~pl~~~~~~p~~~D~v~s~fcLE~a----~~d~~~y~~al~ni~~lLkpGG~Lil 197 (256)
T PF01234_consen 134 AVKQVVPCDVTQP--NPLDPPVVLPPKFDCVISSFCLESA----CKDLDEYRRALRNISSLLKPGGHLIL 197 (256)
T ss_dssp HEEEEEE--TTSS--STTTTS-SS-SSEEEEEEESSHHHH-----SSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred hhceEEEeeccCC--CCCCccccCccchhhhhhhHHHHHH----cCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 13 3667888652 11111 12359988776632100 01112346999999999999999874
No 248
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.41 E-value=0.0011 Score=58.05 Aligned_cols=101 Identities=19% Similarity=0.173 Sum_probs=66.2
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHH---h----------------------------
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQE---L---------------------------- 172 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~---~---------------------------- 172 (241)
+..+||=-|||.|.++..+|++ + -.+.|.|.|--|+-..+-.+.. .
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~--G-~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP 132 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL--G-YAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP 132 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc--c-ceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence 4578999999999999999998 4 5799999999986654432211 0
Q ss_pred ---------CCCCEEEEEccccchHHhhccCC--CCcEeEEEEe-CCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 173 ---------ALSNIHFLFANASVSFKQLVSSY--PGPLMLVSIL-CPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 173 ---------~l~ni~~~~~D~~~~~~~~~~~~--~~~~d~V~~~-~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
...++....||+.+. .... .+.+|.|+.. |.|. .++- -.+|+.|.++|||||..+
T Consensus 133 Dv~p~~~~~~~~~~sm~aGDF~e~----y~~~~~~~~~d~VvT~FFIDT-A~Ni--------~~Yi~tI~~lLkpgG~WI 199 (270)
T PF07942_consen 133 DVDPSSELPSPSNLSMCAGDFLEV----YGPDENKGSFDVVVTCFFIDT-AENI--------IEYIETIEHLLKPGGYWI 199 (270)
T ss_pred CcCcccccCCCCceeEecCccEEe----cCCcccCCcccEEEEEEEeec-hHHH--------HHHHHHHHHHhccCCEEE
Confidence 011344444555442 1111 2578877544 4553 2111 389999999999999764
No 249
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.40 E-value=0.00066 Score=60.55 Aligned_cols=90 Identities=16% Similarity=0.124 Sum_probs=61.7
Q ss_pred hhHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccC
Q 026219 115 DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSS 194 (241)
Q Consensus 115 ~~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~ 194 (241)
+..+.+...++..++|.=-|.|.++..+.++.++ +.++|+|.++++++.|+++++.. -.++.+++++..+....+...
T Consensus 11 Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~~-~~r~~~~~~~F~~l~~~l~~~ 88 (310)
T PF01795_consen 11 EVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKKF-DDRFIFIHGNFSNLDEYLKEL 88 (310)
T ss_dssp HHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCCC-CTTEEEEES-GGGHHHHHHHT
T ss_pred HHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhhc-cceEEEEeccHHHHHHHHHHc
Confidence 3444454445789999999999999999999998 99999999999999998876543 257999999988754433332
Q ss_pred -CCCcEeEEEEeC
Q 026219 195 -YPGPLMLVSILC 206 (241)
Q Consensus 195 -~~~~~d~V~~~~ 206 (241)
....+|.|++..
T Consensus 89 ~~~~~~dgiL~DL 101 (310)
T PF01795_consen 89 NGINKVDGILFDL 101 (310)
T ss_dssp TTTS-EEEEEEE-
T ss_pred cCCCccCEEEEcc
Confidence 345788887653
No 250
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.37 E-value=0.0011 Score=60.88 Aligned_cols=100 Identities=18% Similarity=0.160 Sum_probs=75.1
Q ss_pred CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCC--EEEEEccccchHHhhccCCCCcEeEE
Q 026219 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN--IHFLFANASVSFKQLVSSYPGPLMLV 202 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~n--i~~~~~D~~~~~~~~~~~~~~~~d~V 202 (241)
..+|||.=+|+|.=++.++...++..+|+.-|+|+++++.+++|++.++++. +++.+.|+...+. .....||.|
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~----~~~~~fD~I 125 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLY----SRQERFDVI 125 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHC----HSTT-EEEE
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhh----hccccCCEE
Confidence 3589999999999999999986543689999999999999999999999864 8899999976332 125778988
Q ss_pred EEe-CCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 203 SIL-CPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 203 ~~~-~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
-+. |..| ..+|+.+.+.++.||.|.+
T Consensus 126 DlDPfGSp-------------~pfldsA~~~v~~gGll~v 152 (377)
T PF02005_consen 126 DLDPFGSP-------------APFLDSALQAVKDGGLLCV 152 (377)
T ss_dssp EE--SS---------------HHHHHHHHHHEEEEEEEEE
T ss_pred EeCCCCCc-------------cHhHHHHHHHhhcCCEEEE
Confidence 764 3334 3899999999999999875
No 251
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.29 E-value=0.001 Score=57.47 Aligned_cols=61 Identities=16% Similarity=0.246 Sum_probs=48.1
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccc
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV 186 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~ 186 (241)
...+|+|||||.--+++......++ ..++|+||+..+++.........+. +.++...|...
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~~~-a~Y~a~DID~~~ve~l~~~l~~l~~-~~~~~v~Dl~~ 165 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEAPG-ATYIAYDIDSQLVEFLNAFLAVLGV-PHDARVRDLLS 165 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSSTT--EEEEEESBHHHHHHHHHHHHHTT--CEEEEEE-TTT
T ss_pred CCchhhhhhccCCceehhhcccCCC-cEEEEEeCCHHHHHHHHHHHHhhCC-CcceeEeeeec
Confidence 3689999999999999998777677 7999999999999999998887775 57777778764
No 252
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.22 E-value=0.0043 Score=54.94 Aligned_cols=87 Identities=15% Similarity=0.177 Sum_probs=67.0
Q ss_pred HHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCC
Q 026219 117 SEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYP 196 (241)
Q Consensus 117 ~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~ 196 (241)
.+.+...++...+|.=-|.|.++..+.+++++.+.++|+|.++.+++.|+++....+ .++.+++++..+..........
T Consensus 16 i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~-~r~~~v~~~F~~l~~~l~~~~i 94 (314)
T COG0275 16 VELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD-GRVTLVHGNFANLAEALKELGI 94 (314)
T ss_pred HHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC-CcEEEEeCcHHHHHHHHHhcCC
Confidence 344444446899999999999999999999865679999999999999999987765 5899999988764433322223
Q ss_pred CcEeEEEE
Q 026219 197 GPLMLVSI 204 (241)
Q Consensus 197 ~~~d~V~~ 204 (241)
+.+|.|.+
T Consensus 95 ~~vDGiL~ 102 (314)
T COG0275 95 GKVDGILL 102 (314)
T ss_pred CceeEEEE
Confidence 56776654
No 253
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.14 E-value=0.0026 Score=52.73 Aligned_cols=104 Identities=14% Similarity=0.216 Sum_probs=65.2
Q ss_pred CCcEEEEcCCccHHHHHHHHHC-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEc-cccchH--HhhccC-CCCcE
Q 026219 125 LPLMVDIGSGSGRFLIWLARRN-PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFA-NASVSF--KQLVSS-YPGPL 199 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~-p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~-D~~~~~--~~~~~~-~~~~~ 199 (241)
+.+|||+||..|.++....++. |. +.|.|||+-.- ...+.+.++.+ |+++.. ..+++. ++..+
T Consensus 70 ~~~VlD~G~APGsWsQVavqr~~p~-g~v~gVDllh~-----------~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~V 137 (232)
T KOG4589|consen 70 EDTVLDCGAAPGSWSQVAVQRVNPN-GMVLGVDLLHI-----------EPPEGATIIQGNDVTDPETYRKIFEALPNRPV 137 (232)
T ss_pred CCEEEEccCCCChHHHHHHHhhCCC-ceEEEEeeeec-----------cCCCCcccccccccCCHHHHHHHHHhCCCCcc
Confidence 7899999999999999988876 77 89999999542 13345677776 777632 222222 45678
Q ss_pred eEEEEeC-CCCchh-hh-hhhcccchHHHHHHHHhccccCCEEE
Q 026219 200 MLVSILC-PDPHFK-KK-HHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 200 d~V~~~~-~~~~~~-~~-~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
|+|+... |++... .+ |..-..+..+++--....++|+|.++
T Consensus 138 dvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fv 181 (232)
T KOG4589|consen 138 DVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFV 181 (232)
T ss_pred cEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEE
Confidence 8876543 222110 01 11111133445555567788999876
No 254
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=97.11 E-value=0.0024 Score=52.08 Aligned_cols=110 Identities=17% Similarity=0.166 Sum_probs=69.2
Q ss_pred EcCCccHHHHHHHHHCCCCcEEEEEeCC--HHHHHHH---HHHHHHhCCCCEEE-EEccccchHHhhccCCCCcEeEEEE
Q 026219 131 IGSGSGRFLIWLARRNPDSGNYLGLEIR--QKLVKRA---EFWVQELALSNIHF-LFANASVSFKQLVSSYPGPLMLVSI 204 (241)
Q Consensus 131 IGCGtG~~~~~la~~~p~~~~v~giDis--~~~v~~a---~~~~~~~~l~ni~~-~~~D~~~~~~~~~~~~~~~~d~V~~ 204 (241)
||=|.=+++..|++.+....++++.-.. ++..+.- .+++++..-.++.+ ...|+++.- .........||.|+.
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~-~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLH-KHFRLKNQRFDRIIF 81 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCccc-ccccccCCcCCEEEE
Confidence 5667778888899987621566665544 4444332 24555443234444 346777532 222223577999999
Q ss_pred eCCCCc-----hhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 205 LCPDPH-----FKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 205 ~~~~~~-----~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
+||... .+..-..+|.+...+++.+.++|+++|.|+|
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhV 123 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHV 123 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 998753 1222234455678999999999999999875
No 255
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.11 E-value=0.0029 Score=54.17 Aligned_cols=98 Identities=15% Similarity=0.141 Sum_probs=64.8
Q ss_pred CCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCE-EEEEccccchHHhhccCCCCcEe
Q 026219 122 NPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNI-HFLFANASVSFKQLVSSYPGPLM 200 (241)
Q Consensus 122 ~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni-~~~~~D~~~~~~~~~~~~~~~~d 200 (241)
..++.++||||+-||.++..+.++... .|+|+|..-+.+..--+ . . +++ -+...|+....+..+ .+..|
T Consensus 77 ~~k~kv~LDiGsSTGGFTd~lLq~gAk--~VyavDVG~~Ql~~kLR---~-d-~rV~~~E~tN~r~l~~~~~---~~~~d 146 (245)
T COG1189 77 DVKGKVVLDIGSSTGGFTDVLLQRGAK--HVYAVDVGYGQLHWKLR---N-D-PRVIVLERTNVRYLTPEDF---TEKPD 146 (245)
T ss_pred CCCCCEEEEecCCCccHHHHHHHcCCc--EEEEEEccCCccCHhHh---c-C-CcEEEEecCChhhCCHHHc---ccCCC
Confidence 356899999999999999999998665 89999999887765321 1 1 333 344556654322222 23456
Q ss_pred EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
.+++..+.- ....+|-.+..+|+|+|.++
T Consensus 147 ~~v~DvSFI-----------SL~~iLp~l~~l~~~~~~~v 175 (245)
T COG1189 147 LIVIDVSFI-----------SLKLILPALLLLLKDGGDLV 175 (245)
T ss_pred eEEEEeehh-----------hHHHHHHHHHHhcCCCceEE
Confidence 555433221 11478888899999988765
No 256
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.10 E-value=0.0023 Score=54.21 Aligned_cols=75 Identities=19% Similarity=0.230 Sum_probs=61.4
Q ss_pred CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYPGPLMLVS 203 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~~~~d~V~ 203 (241)
+..+.||||-.|.+...+.+.++. ..+++.|+++..++.|.++++++++ +.++...+|....+ . .+..+|.++
T Consensus 17 ~~~iaDIGsDHAYLp~~Lv~~~~~-~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l----~-~~d~~d~iv 90 (226)
T COG2384 17 GARIADIGSDHAYLPIYLVKNNPA-STAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVL----E-LEDEIDVIV 90 (226)
T ss_pred CCceeeccCchhHhHHHHHhcCCc-ceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcccc----C-ccCCcCEEE
Confidence 455999999999999999999988 7999999999999999999999887 46888888886521 1 234577665
Q ss_pred Ee
Q 026219 204 IL 205 (241)
Q Consensus 204 ~~ 205 (241)
+.
T Consensus 91 IA 92 (226)
T COG2384 91 IA 92 (226)
T ss_pred Ee
Confidence 54
No 257
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.02 E-value=0.0046 Score=56.09 Aligned_cols=99 Identities=16% Similarity=0.116 Sum_probs=78.5
Q ss_pred CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEE
Q 026219 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSI 204 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~ 204 (241)
..+|+|.=+|||.=++.++..-+. .+++.-|+||++++.+++|++.+...+...++.|+...+.. ....||.|-+
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~-~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~----~~~~fd~IDi 127 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGV-VKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHE----LHRAFDVIDI 127 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCc-cEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHh----cCCCccEEec
Confidence 578999999999999999998776 58999999999999999999988556777888888754322 1366787765
Q ss_pred e-CCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 205 L-CPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 205 ~-~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
. |..| ..+++...+.++.||.+-+
T Consensus 128 DPFGSP-------------aPFlDaA~~s~~~~G~l~v 152 (380)
T COG1867 128 DPFGSP-------------APFLDAALRSVRRGGLLCV 152 (380)
T ss_pred CCCCCC-------------chHHHHHHHHhhcCCEEEE
Confidence 4 3334 2788888888999998753
No 258
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.02 E-value=0.0041 Score=58.19 Aligned_cols=99 Identities=12% Similarity=0.138 Sum_probs=72.2
Q ss_pred cEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEEe-
Q 026219 127 LMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSIL- 205 (241)
Q Consensus 127 ~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~- 205 (241)
++|-+|||+-.+...+.+..- -.|+-+|+|+-.++.+..+-. ...+-.++...|+.. ....+++||.|+.-
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~--~dI~~iD~S~V~V~~m~~~~~-~~~~~~~~~~~d~~~-----l~fedESFdiVIdkG 122 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGF--EDITNIDSSSVVVAAMQVRNA-KERPEMQMVEMDMDQ-----LVFEDESFDIVIDKG 122 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCC--CCceeccccHHHHHHHHhccc-cCCcceEEEEecchh-----ccCCCcceeEEEecC
Confidence 899999999999999877643 259999999999998876543 222458899999976 34468899977531
Q ss_pred -----CCC---CchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 206 -----CPD---PHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 206 -----~~~---~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
+.+ +|.. ......+.++.|+|+|||+++
T Consensus 123 tlDal~~de~a~~~~-------~~v~~~~~eVsrvl~~~gk~~ 158 (482)
T KOG2352|consen 123 TLDALFEDEDALLNT-------AHVSNMLDEVSRVLAPGGKYI 158 (482)
T ss_pred ccccccCCchhhhhh-------HHhhHHHhhHHHHhccCCEEE
Confidence 221 1110 123588999999999999865
No 259
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=96.94 E-value=0.00015 Score=60.80 Aligned_cols=91 Identities=20% Similarity=0.212 Sum_probs=59.0
Q ss_pred CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEE
Q 026219 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSI 204 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~ 204 (241)
..++||+|.|.|..+..++..+.+ |++.|.|..|....+. .+. +++. +.++.. -+-++|+|..
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~fee---vyATElS~tMr~rL~k----k~y---nVl~--~~ew~~-----t~~k~dli~c 175 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTFEE---VYATELSWTMRDRLKK----KNY---NVLT--EIEWLQ-----TDVKLDLILC 175 (288)
T ss_pred CeeEEeccCCCcchhhhhcchHHH---HHHHHhhHHHHHHHhh----cCC---ceee--ehhhhh-----cCceeehHHH
Confidence 468999999999999999888755 9999999999887644 222 2221 111110 1344565532
Q ss_pred -eCCCCchhhhhhhcccchHHHHHHHHhcccc-CCEEEc
Q 026219 205 -LCPDPHFKKKHHKRRVVQKPLVDSIIDYLMP-GGKVYF 241 (241)
Q Consensus 205 -~~~~~~~~~~~~~~r~~~~~ll~~l~r~Lkp-GG~l~~ 241 (241)
+.-|... -.-.+++.++.+|+| +|++++
T Consensus 176 lNlLDRc~---------~p~kLL~Di~~vl~psngrviv 205 (288)
T KOG3987|consen 176 LNLLDRCF---------DPFKLLEDIHLVLAPSNGRVIV 205 (288)
T ss_pred HHHHHhhc---------ChHHHHHHHHHHhccCCCcEEE
Confidence 2212111 003899999999999 888764
No 260
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.75 E-value=0.0024 Score=57.60 Aligned_cols=107 Identities=21% Similarity=0.261 Sum_probs=69.6
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCC-CCcEeEE
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSY-PGPLMLV 202 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~-~~~~d~V 202 (241)
...+|||+|.|.|.-+..+..-+|+.-.++-+|.|+..-++.....+........+...|++.- ..+.+ ...++++
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~d---Rl~lp~ad~ytl~ 189 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTED---RLSLPAADLYTLA 189 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchh---ccCCCccceeehh
Confidence 3467999999999999988888887456888899987776665554443434455566666541 22222 2345555
Q ss_pred EEeC---CCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 203 SILC---PDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 203 ~~~~---~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
++.. ++...+. ....++.++.++.|||.++|
T Consensus 190 i~~~eLl~d~~ek~--------i~~~ie~lw~l~~~gg~lVi 223 (484)
T COG5459 190 IVLDELLPDGNEKP--------IQVNIERLWNLLAPGGHLVI 223 (484)
T ss_pred hhhhhhccccCcch--------HHHHHHHHHHhccCCCeEEE
Confidence 4322 2221111 13589999999999998875
No 261
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=96.75 E-value=0.039 Score=47.50 Aligned_cols=111 Identities=14% Similarity=0.048 Sum_probs=65.5
Q ss_pred hhHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccC
Q 026219 115 DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSS 194 (241)
Q Consensus 115 ~~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~ 194 (241)
.|.....+..+.+||=+|=+- -+++.++-..+. .+|+-+|+++.+++..++.+++.|++ ++.++.|+.+.+|.-
T Consensus 35 ~~~~~~gdL~gk~il~lGDDD-LtSlA~al~~~~-~~I~VvDiDeRll~fI~~~a~~~gl~-i~~~~~DlR~~LP~~--- 108 (243)
T PF01861_consen 35 ALMAERGDLEGKRILFLGDDD-LTSLALALTGLP-KRITVVDIDERLLDFINRVAEEEGLP-IEAVHYDLRDPLPEE--- 108 (243)
T ss_dssp HHHHHTT-STT-EEEEES-TT--HHHHHHHHT---SEEEEE-S-HHHHHHHHHHHHHHT---EEEE---TTS---TT---
T ss_pred HHHHhcCcccCCEEEEEcCCc-HHHHHHHhhCCC-CeEEEEEcCHHHHHHHHHHHHHcCCc-eEEEEecccccCCHH---
Confidence 455555555688999998443 334444444555 68999999999999999999999986 999999998865443
Q ss_pred CCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCC-EEE
Q 026219 195 YPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGG-KVY 240 (241)
Q Consensus 195 ~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG-~l~ 240 (241)
.-+.||.++...|.. .+.- .-|+.+....||..| ..+
T Consensus 109 ~~~~fD~f~TDPPyT--~~G~-------~LFlsRgi~~Lk~~g~~gy 146 (243)
T PF01861_consen 109 LRGKFDVFFTDPPYT--PEGL-------KLFLSRGIEALKGEGCAGY 146 (243)
T ss_dssp TSS-BSEEEE---SS--HHHH-------HHHHHHHHHTB-STT-EEE
T ss_pred HhcCCCEEEeCCCCC--HHHH-------HHHHHHHHHHhCCCCceEE
Confidence 348899888776543 1111 478888888998666 444
No 262
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=96.74 E-value=0.0079 Score=59.12 Aligned_cols=107 Identities=16% Similarity=0.164 Sum_probs=65.9
Q ss_pred CCcEEEEcCCccHHHHHHHHHC-------CC----CcEEEEEeCCH---HHHHHH-----------HHHHHH-----hCC
Q 026219 125 LPLMVDIGSGSGRFLIWLARRN-------PD----SGNYLGLEIRQ---KLVKRA-----------EFWVQE-----LAL 174 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~-------p~----~~~v~giDis~---~~v~~a-----------~~~~~~-----~~l 174 (241)
.-+|+|+|-|+|...+...+.. +. ..+++++|..| +.+..+ ++..+. .|+
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 4789999999998777665433 21 25899999744 222222 222211 121
Q ss_pred -------C--CEEEEEccccchHHhhccCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 175 -------S--NIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 175 -------~--ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
. +++++.+|+.+.+..+ +..+|.+++.-..|. + ...+-.+.+++.++++++|||++.
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~~~~~----~~~~d~~~lD~FsP~-~----np~~W~~~~~~~l~~~~~~~~~~~ 203 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANELLPQL----DARADAWFLDGFAPA-K----NPDMWSPNLFNALARLARPGATLA 203 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHHHHhc----cccccEEEeCCCCCc-c----ChhhccHHHHHHHHHHhCCCCEEE
Confidence 1 3456778988755443 356888876532220 1 112344699999999999999874
No 263
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=96.71 E-value=0.0049 Score=53.83 Aligned_cols=104 Identities=16% Similarity=0.258 Sum_probs=58.3
Q ss_pred CCcEEEEcCC--ccHHHHHHHHH-CCCCcEEEEEeCCHHHHHHHHHHHHHhCCCC--EEEEEccccchH---H-----hh
Q 026219 125 LPLMVDIGSG--SGRFLIWLARR-NPDSGNYLGLEIRQKLVKRAEFWVQELALSN--IHFLFANASVSF---K-----QL 191 (241)
Q Consensus 125 ~~~VLDIGCG--tG~~~~~la~~-~p~~~~v~giDis~~~v~~a~~~~~~~~l~n--i~~~~~D~~~~~---~-----~~ 191 (241)
-.-.|||||| |-...-.++++ .|+ ++|+=+|.+|-.+..++..+... ++ ..++.+|+.+.- . .+
T Consensus 69 IrQFLDlGsGlPT~~nvHevAq~~~P~-aRVVYVD~DPvv~ah~ralL~~~--~~g~t~~v~aD~r~p~~iL~~p~~~~~ 145 (267)
T PF04672_consen 69 IRQFLDLGSGLPTAGNVHEVAQRVAPD-ARVVYVDNDPVVLAHARALLADN--PRGRTAYVQADLRDPEAILAHPEVRGL 145 (267)
T ss_dssp --EEEEET--S--SS-HHHHHHHH-TT--EEEEEESSHHHHHCCHHHHTT---TTSEEEEEE--TT-HHHHHCSHHHHCC
T ss_pred cceEEEcccCCCCCCCHhHHHHhhCCC-ceEEEECCCchHHHHHHhhhcCC--CCccEEEEeCCCCCHHHHhcCHHHHhc
Confidence 3569999999 33445555554 577 99999999999999998877644 45 899999998631 1 11
Q ss_pred ccCCCCcEeEEE---EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 192 VSSYPGPLMLVS---ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 192 ~~~~~~~~d~V~---~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
++ ++..+-+++ ++|.. ..++. ..+++.+...|.||..|.|
T Consensus 146 lD-~~rPVavll~~vLh~v~-D~~dp--------~~iv~~l~d~lapGS~L~i 188 (267)
T PF04672_consen 146 LD-FDRPVAVLLVAVLHFVP-DDDDP--------AGIVARLRDALAPGSYLAI 188 (267)
T ss_dssp ---TTS--EEEECT-GGGS--CGCTH--------HHHHHHHHCCS-TT-EEEE
T ss_pred CC-CCCCeeeeeeeeeccCC-CccCH--------HHHHHHHHHhCCCCceEEE
Confidence 21 233333332 23321 11222 4999999999999998875
No 264
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=96.56 E-value=0.0048 Score=57.17 Aligned_cols=54 Identities=20% Similarity=0.356 Sum_probs=48.1
Q ss_pred CcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEE
Q 026219 126 PLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLF 181 (241)
Q Consensus 126 ~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~ 181 (241)
.-|||||.|||-+.+..++...+ .|+++|.-..|++.|++-..++|. ++|.++.
T Consensus 68 v~vLdigtGTGLLSmMAvragaD--~vtA~EvfkPM~d~arkI~~kng~SdkI~vIn 122 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGAD--SVTACEVFKPMVDLARKIMHKNGMSDKINVIN 122 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcCC--eEEeehhhchHHHHHHHHHhcCCCccceeeec
Confidence 46999999999999999998876 699999999999999999999987 4687775
No 265
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=96.48 E-value=0.02 Score=54.39 Aligned_cols=115 Identities=17% Similarity=0.140 Sum_probs=76.4
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCC---CcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhc-cCCCCc
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPD---SGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLV-SSYPGP 198 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~---~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~-~~~~~~ 198 (241)
...+|.|-.||+|.+....++.... ...++|.|+++.....|+-++--+|.. ++.+..+|.... +... ..-.+.
T Consensus 186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~-~~~~~~~~~~~ 264 (489)
T COG0286 186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSN-PKHDDKDDKGK 264 (489)
T ss_pred CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccC-CcccccCCccc
Confidence 3568999999999999988776531 167999999999999999998877775 466777766531 1111 111356
Q ss_pred EeEEEEeCCCC---chhhh----hhhccc---------ch-HHHHHHHHhccccCCEE
Q 026219 199 LMLVSILCPDP---HFKKK----HHKRRV---------VQ-KPLVDSIIDYLMPGGKV 239 (241)
Q Consensus 199 ~d~V~~~~~~~---~~~~~----~~~~r~---------~~-~~ll~~l~r~LkpGG~l 239 (241)
||.|+.+.|.. |.... ...++. -. ..+++.+...|+|||+.
T Consensus 265 ~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~a 322 (489)
T COG0286 265 FDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRA 322 (489)
T ss_pred eeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceE
Confidence 88877765431 22110 000000 11 68999999999998854
No 266
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=96.47 E-value=0.0096 Score=49.67 Aligned_cols=110 Identities=18% Similarity=0.185 Sum_probs=61.8
Q ss_pred CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHH------HHHHHHHHHhCCCCEEEEEccccchHHhhccCCC
Q 026219 123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLV------KRAEFWVQELALSNIHFLFANASVSFKQLVSSYP 196 (241)
Q Consensus 123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v------~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~ 196 (241)
..+.+|+|+=-|.|.++..++......+.|++.=..+... ...+...++....|.+.+-.+... +. ++
T Consensus 47 kpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A-----~~-~p 120 (238)
T COG4798 47 KPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVA-----LG-AP 120 (238)
T ss_pred CCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccc-----cC-CC
Confidence 3478999999999999999998764337888876544311 111111222233455555444332 11 23
Q ss_pred CcEeEEEEe--CCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 197 GPLMLVSIL--CPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 197 ~~~d~V~~~--~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
...|.+..+ +.+-+.+.-+ -....++...+++.|||||.+.+
T Consensus 121 q~~d~~~~~~~yhdmh~k~i~---~~~A~~vna~vf~~LKPGGv~~V 164 (238)
T COG4798 121 QKLDLVPTAQNYHDMHNKNIH---PATAAKVNAAVFKALKPGGVYLV 164 (238)
T ss_pred CcccccccchhhhhhhccccC---cchHHHHHHHHHHhcCCCcEEEE
Confidence 444544321 1211111100 12335888999999999998764
No 267
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=96.45 E-value=0.012 Score=49.59 Aligned_cols=105 Identities=17% Similarity=0.258 Sum_probs=51.1
Q ss_pred CCcEEEEcCCccHHHHHHHH---HC-CCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccch--HHhhccC-CC
Q 026219 125 LPLMVDIGSGSGRFLIWLAR---RN-PDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVS--FKQLVSS-YP 196 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~---~~-p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~--~~~~~~~-~~ 196 (241)
..+|+|+|.-.|..++.+|. .+ +. ++|+|||++........ .+...+ ++|++++||..+. +...... .+
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~-~~VigiDIdir~~~~~a--~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~ 109 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGK-GKVIGIDIDIRPHNRKA--IESHPMSPRITFIQGDSIDPEIVDQVRELASP 109 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT----EEEEEES-GTT--S-G--GGG----TTEEEEES-SSSTHHHHTSGSS---
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCC-ceEEEEeCCcchhchHH--HhhccccCceEEEECCCCCHHHHHHHHHhhcc
Confidence 47899999999999987764 34 55 89999999644322211 111122 5899999998752 1111110 01
Q ss_pred CcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 197 GPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 197 ~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
....+|+.. ++. .. .-..+-|+....+|++|+.+++
T Consensus 110 ~~~vlVilD-s~H-~~-------~hvl~eL~~y~plv~~G~Y~IV 145 (206)
T PF04989_consen 110 PHPVLVILD-SSH-TH-------EHVLAELEAYAPLVSPGSYLIV 145 (206)
T ss_dssp -SSEEEEES-S------------SSHHHHHHHHHHT--TT-EEEE
T ss_pred CCceEEEEC-CCc-cH-------HHHHHHHHHhCccCCCCCEEEE
Confidence 122233322 221 00 0113777889999999999864
No 268
>PRK11524 putative methyltransferase; Provisional
Probab=96.42 E-value=0.0075 Score=53.18 Aligned_cols=46 Identities=15% Similarity=0.107 Sum_probs=40.6
Q ss_pred CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHH
Q 026219 123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQE 171 (241)
Q Consensus 123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~ 171 (241)
.++..|||--+|+|.+++...+... +.+|+|++++-++.|+++++.
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA~~lgR---~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVAKASGR---KFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCEEEECCCCCcHHHHHHHHcCC---CEEEEeCCHHHHHHHHHHHHh
Confidence 3589999999999999999888754 599999999999999999853
No 269
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.42 E-value=0.014 Score=46.73 Aligned_cols=66 Identities=21% Similarity=0.273 Sum_probs=52.4
Q ss_pred HhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccc
Q 026219 119 VYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASV 186 (241)
Q Consensus 119 ~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~ 186 (241)
.....+..+.+|+|+|-|.+.+..++... ...+|+|++|..+..++-+.-+.|. +..+|..-|+.+
T Consensus 67 ll~~n~~GklvDlGSGDGRiVlaaar~g~--~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK 133 (199)
T KOG4058|consen 67 LLRGNPKGKLVDLGSGDGRIVLAAARCGL--RPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWK 133 (199)
T ss_pred HccCCCCCcEEeccCCCceeehhhhhhCC--CcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhh
Confidence 34444457899999999999999888752 3578999999999999988777776 357888888765
No 270
>PHA01634 hypothetical protein
Probab=96.40 E-value=0.0087 Score=46.62 Aligned_cols=47 Identities=17% Similarity=0.145 Sum_probs=42.2
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHh
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQEL 172 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~ 172 (241)
.+.+|+|||.+-|..++.++-+... .|+++|.++...+..+++++.+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK--~Vva~E~~~kl~k~~een~k~n 74 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGAS--FVVQYEKEEKLRKKWEEVCAYF 74 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCcc--EEEEeccCHHHHHHHHHHhhhh
Confidence 4789999999999999999988765 8999999999999999988755
No 271
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=96.38 E-value=0.021 Score=50.48 Aligned_cols=110 Identities=20% Similarity=0.325 Sum_probs=85.0
Q ss_pred CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHh--CC--CCEEEEEccccchHHhhccCCCCc
Q 026219 123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQEL--AL--SNIHFLFANASVSFKQLVSSYPGP 198 (241)
Q Consensus 123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~--~l--~ni~~~~~D~~~~~~~~~~~~~~~ 198 (241)
++..++|=||=|-|.+.....+. +...+++-+|++++.++..++..... |. +++.+..||....+... ..+.
T Consensus 120 ~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~---~~~~ 195 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDL---KENP 195 (337)
T ss_pred CCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHh---ccCC
Confidence 44578999999999999998886 44468999999999999998876653 33 46889999987654443 2578
Q ss_pred EeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 199 LMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 199 ~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
+|+|+....+|-.+.- ..+.+.+++.+.+.||+||.+.
T Consensus 196 ~dVii~dssdpvgpa~----~lf~~~~~~~v~~aLk~dgv~~ 233 (337)
T KOG1562|consen 196 FDVIITDSSDPVGPAC----ALFQKPYFGLVLDALKGDGVVC 233 (337)
T ss_pred ceEEEEecCCccchHH----HHHHHHHHHHHHHhhCCCcEEE
Confidence 9999888877644322 1355788999999999999875
No 272
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=96.30 E-value=0.006 Score=48.56 Aligned_cols=113 Identities=14% Similarity=0.174 Sum_probs=57.8
Q ss_pred hhHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccC
Q 026219 115 DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSS 194 (241)
Q Consensus 115 ~~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~ 194 (241)
+|.......-..-|||+|=|+|.+=-+|-+.+|+ -.|+.+|.--..-..+ -.+.-.++.+|+.++++. ...
T Consensus 19 ~~a~~~v~~~~G~VlElGLGNGRTydHLRe~~p~-R~I~vfDR~l~~hp~~-------~P~~~~~ilGdi~~tl~~-~~~ 89 (160)
T PF12692_consen 19 NWAAAQVAGLPGPVLELGLGNGRTYDHLREIFPD-RRIYVFDRALACHPSS-------TPPEEDLILGDIRETLPA-LAR 89 (160)
T ss_dssp HHHHHHTTT--S-EEEE--TTSHHHHHHHHH--S-S-EEEEESS--S-GGG----------GGGEEES-HHHHHHH-HHH
T ss_pred HHHHHHhcCCCCceEEeccCCCccHHHHHHhCCC-CeEEEEeeecccCCCC-------CCchHheeeccHHHHhHH-HHh
Confidence 5654433333467999999999999999999999 8999999853211111 012236889999988776 222
Q ss_pred CCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 195 YPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 195 ~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
+......+-..+......+.- .....+=.-+..+|.|||.++
T Consensus 90 ~g~~a~laHaD~G~g~~~~d~----a~a~~lspli~~~la~gGi~v 131 (160)
T PF12692_consen 90 FGAGAALAHADIGTGDKEKDD----ATAAWLSPLIAPVLAPGGIMV 131 (160)
T ss_dssp H-S-EEEEEE----S-HHHHH----HHHHHHHHHHGGGEEEEEEEE
T ss_pred cCCceEEEEeecCCCCcchhH----HHHHhhhHHHHHHhcCCcEEE
Confidence 334444443333322222211 111233345678899999875
No 273
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=96.30 E-value=0.015 Score=50.02 Aligned_cols=100 Identities=16% Similarity=0.192 Sum_probs=66.1
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHH----HHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcE
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQK----LVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPL 199 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~----~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~ 199 (241)
.+.+||=+|.++|....+++.-....+-|+++|.|+. ++.+|++ -+||-.+.-|+.-...... .-+.+
T Consensus 156 pGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk------RtNiiPIiEDArhP~KYRm--lVgmV 227 (317)
T KOG1596|consen 156 PGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK------RTNIIPIIEDARHPAKYRM--LVGMV 227 (317)
T ss_pred CCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc------cCCceeeeccCCCchheee--eeeeE
Confidence 4789999999999999999887633389999999965 3444432 2688888889874211111 12345
Q ss_pred eEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 200 MLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 200 d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
|+|+...+.| ++. +.+.-+....||+||-++|
T Consensus 228 DvIFaDvaqp--dq~--------RivaLNA~~FLk~gGhfvi 259 (317)
T KOG1596|consen 228 DVIFADVAQP--DQA--------RIVALNAQYFLKNGGHFVI 259 (317)
T ss_pred EEEeccCCCc--hhh--------hhhhhhhhhhhccCCeEEE
Confidence 6555544444 222 2444566778999998764
No 274
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=96.28 E-value=0.0064 Score=51.43 Aligned_cols=83 Identities=12% Similarity=0.105 Sum_probs=54.4
Q ss_pred CcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE--
Q 026219 126 PLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS-- 203 (241)
Q Consensus 126 ~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~-- 203 (241)
-++|||||=+......- .+- ..|+.||+++. .-.+.+.|+.+. + +.....+.||+|+
T Consensus 53 lrlLEVGals~~N~~s~---~~~-fdvt~IDLns~---------------~~~I~qqDFm~r-p-lp~~~~e~FdvIs~S 111 (219)
T PF11968_consen 53 LRLLEVGALSTDNACST---SGW-FDVTRIDLNSQ---------------HPGILQQDFMER-P-LPKNESEKFDVISLS 111 (219)
T ss_pred ceEEeecccCCCCcccc---cCc-eeeEEeecCCC---------------CCCceeeccccC-C-CCCCcccceeEEEEE
Confidence 58999999866655442 333 56999999872 234566777652 0 0111346788774
Q ss_pred --EeCCCCchhhhhhhcccchHHHHHHHHhccccCCE
Q 026219 204 --ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGK 238 (241)
Q Consensus 204 --~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~ 238 (241)
++|. |.++.+- +.++.+++.|+|+|.
T Consensus 112 LVLNfV-P~p~~RG--------~Ml~r~~~fL~~~g~ 139 (219)
T PF11968_consen 112 LVLNFV-PDPKQRG--------EMLRRAHKFLKPPGL 139 (219)
T ss_pred EEEeeC-CCHHHHH--------HHHHHHHHHhCCCCc
Confidence 4442 2234443 899999999999999
No 275
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=96.23 E-value=0.025 Score=51.34 Aligned_cols=116 Identities=16% Similarity=0.169 Sum_probs=75.4
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCC---CCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhc--cC---C
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNP---DSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLV--SS---Y 195 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p---~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~--~~---~ 195 (241)
++.+|||++...|+-+..+.+..- ..+.|++=|.++..+......+......++.+...|+.. ++... .. .
T Consensus 155 p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~-~p~~~~~~~~~~~ 233 (375)
T KOG2198|consen 155 PGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASL-FPNIYLKDGNDKE 233 (375)
T ss_pred CCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeeccccee-ccccccccCchhh
Confidence 478999999999999988877542 124899999999988888776655444567777777653 22221 11 1
Q ss_pred CCcEeEEEEeCC---C------C--chhhhhhhc----ccchHHHHHHHHhccccCCEEE
Q 026219 196 PGPLMLVSILCP---D------P--HFKKKHHKR----RVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 196 ~~~~d~V~~~~~---~------~--~~~~~~~~~----r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
...||.|.+..| | + |-.-....+ -.++-.++.+..++||+||.++
T Consensus 234 ~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lV 293 (375)
T KOG2198|consen 234 QLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLV 293 (375)
T ss_pred hhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEE
Confidence 234777755432 1 1 111001111 1366789999999999999986
No 276
>PRK13699 putative methylase; Provisional
Probab=96.14 E-value=0.017 Score=49.43 Aligned_cols=49 Identities=14% Similarity=0.318 Sum_probs=41.7
Q ss_pred hcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHh
Q 026219 120 YKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQEL 172 (241)
Q Consensus 120 ~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~ 172 (241)
+.+ ++..|||--||+|+++....+... +++|+|++++..+.+.+++++.
T Consensus 160 ~s~-~g~~vlDpf~Gsgtt~~aa~~~~r---~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 160 FTH-PNAIVLDPFAGSGSTCVAALQSGR---RYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred hCC-CCCEEEeCCCCCCHHHHHHHHcCC---CEEEEecCHHHHHHHHHHHHHH
Confidence 443 588999999999999999887643 5999999999999999988764
No 277
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=96.10 E-value=0.069 Score=45.29 Aligned_cols=112 Identities=13% Similarity=-0.036 Sum_probs=61.1
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCC-CcEEEEEeCCHHHHHHHHHHHH--------------------------------
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPD-SGNYLGLEIRQKLVKRAEFWVQ-------------------------------- 170 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~-~~~v~giDis~~~v~~a~~~~~-------------------------------- 170 (241)
..-++-|-+||.|.++-.+.-..+. ...|+|.|+++++++.|++|+.
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~s 130 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALES 130 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 3468999999999998877655432 2479999999999999998721
Q ss_pred ---------Hh-CCCCEEEEEccccchHHh-hccCCCCcEeEEEEeCCC----CchhhhhhhcccchHHHHHHHHhcccc
Q 026219 171 ---------EL-ALSNIHFLFANASVSFKQ-LVSSYPGPLMLVSILCPD----PHFKKKHHKRRVVQKPLVDSIIDYLMP 235 (241)
Q Consensus 171 ---------~~-~l~ni~~~~~D~~~~~~~-~~~~~~~~~d~V~~~~~~----~~~~~~~~~~r~~~~~ll~~l~r~Lkp 235 (241)
.. +..-..+.+.|+.+.-.. ..+ -....|+|+...|- .|.-+... .-..++|+.++.+|-+
T Consensus 131 A~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~-~~~~~diViTDlPYG~~t~W~g~~~~---~p~~~ml~~l~~vLp~ 206 (246)
T PF11599_consen 131 ADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLD-AGFTPDIVITDLPYGEMTSWQGEGSG---GPVAQMLNSLAPVLPE 206 (246)
T ss_dssp HHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHH-TT---SEEEEE--CCCSSSTTS---H---HHHHHHHHHHHCCS-T
T ss_pred HHHHHHHHHhcCCCCchhheeecccCCchhhhhc-cCCCCCEEEecCCCcccccccCCCCC---CcHHHHHHHHHhhCCC
Confidence 11 222367788888763211 011 12335877765442 23321110 1225899999999954
Q ss_pred CCEE
Q 026219 236 GGKV 239 (241)
Q Consensus 236 GG~l 239 (241)
++.+
T Consensus 207 ~sVV 210 (246)
T PF11599_consen 207 RSVV 210 (246)
T ss_dssp T-EE
T ss_pred CcEE
Confidence 4444
No 278
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=96.06 E-value=0.035 Score=50.70 Aligned_cols=44 Identities=14% Similarity=0.080 Sum_probs=37.1
Q ss_pred CCCcEEEEcCCc-cHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHH
Q 026219 124 TLPLMVDIGSGS-GRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFW 168 (241)
Q Consensus 124 ~~~~VLDIGCGt-G~~~~~la~~~p~~~~v~giDis~~~v~~a~~~ 168 (241)
++.+||.+|||. |..+..+++.... ..++++|.+++..+.+++.
T Consensus 184 ~g~~VlV~g~G~vG~~~~~la~~~g~-~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 184 PGDTVAVWGCGPVGLFAARSAKLLGA-ERVIAIDRVPERLEMARSH 228 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHc
Confidence 467899999998 9999999998754 4699999999998887663
No 279
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=95.92 E-value=0.0092 Score=49.64 Aligned_cols=47 Identities=21% Similarity=0.272 Sum_probs=36.2
Q ss_pred HHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHH
Q 026219 117 SEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEF 167 (241)
Q Consensus 117 ~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~ 167 (241)
...+.+ ++..|||.-||+|.++....+.+. +.+|+|++++.++.|++
T Consensus 185 I~~~t~-~gdiVlDpF~GSGTT~~aa~~l~R---~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 185 IKASTN-PGDIVLDPFAGSGTTAVAAEELGR---RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHS--TT-EEEETT-TTTHHHHHHHHTT----EEEEEESSHHHHHHHHH
T ss_pred HHhhhc-cceeeehhhhccChHHHHHHHcCC---eEEEEeCCHHHHHHhcC
Confidence 344544 589999999999999999888744 59999999999999864
No 280
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=95.87 E-value=0.0069 Score=45.66 Aligned_cols=43 Identities=23% Similarity=0.516 Sum_probs=30.4
Q ss_pred hhHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHH
Q 026219 115 DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQK 160 (241)
Q Consensus 115 ~~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~ 160 (241)
-|.+.....+....+|||||+|-+.-.|.+.. -.=+|+|....
T Consensus 49 LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EG---y~G~GiD~R~R 91 (112)
T PF07757_consen 49 LWRDMYGEQKFQGFVDLGCGNGLLVYILNSEG---YPGWGIDARRR 91 (112)
T ss_pred HHhcccCCCCCCceEEccCCchHHHHHHHhCC---CCccccccccc
Confidence 35555554445789999999999888877763 23579998553
No 281
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.80 E-value=0.011 Score=47.92 Aligned_cols=104 Identities=18% Similarity=0.194 Sum_probs=65.8
Q ss_pred CCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHh---CCCCEEEEEccccchHHhhccCCCCcEe
Q 026219 125 LPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQEL---ALSNIHFLFANASVSFKQLVSSYPGPLM 200 (241)
Q Consensus 125 ~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~---~l~ni~~~~~D~~~~~~~~~~~~~~~~d 200 (241)
+.+|||+|-| +|--++.+|...|. ..|.-.|-+++.++..++....+ +++.+..+.-+.... ........||
T Consensus 30 g~~ilelgggft~laglmia~~a~~-~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~a---qsq~eq~tFD 105 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPD-SSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGA---QSQQEQHTFD 105 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCC-ceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhh---HHHHhhCccc
Confidence 5789999999 67777777877777 78999999999998887755433 222232333222211 0111134688
Q ss_pred EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
.|+..-- -.+++.+ +.+++.|.++|+|.|.-+
T Consensus 106 iIlaADC-lFfdE~h-------~sLvdtIk~lL~p~g~Al 137 (201)
T KOG3201|consen 106 IILAADC-LFFDEHH-------ESLVDTIKSLLRPSGRAL 137 (201)
T ss_pred EEEeccc-hhHHHHH-------HHHHHHHHHHhCccccee
Confidence 7653210 1222222 599999999999999754
No 282
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.75 E-value=0.023 Score=48.64 Aligned_cols=104 Identities=18% Similarity=0.287 Sum_probs=65.2
Q ss_pred CCcEEEEcCCccHHHHHHHHHC----CCCcE----EEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccch--HHhhccC
Q 026219 125 LPLMVDIGSGSGRFLIWLARRN----PDSGN----YLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVS--FKQLVSS 194 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~----p~~~~----v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~--~~~~~~~ 194 (241)
-.+++|++...|++...|+++. +.+.+ +++||+.+.+ .++.+.-+++|++.. ...++..
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-----------PI~GV~qlq~DIT~~stae~Ii~h 110 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-----------PIEGVIQLQGDITSASTAEAIIEH 110 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-----------ccCceEEeecccCCHhHHHHHHHH
Confidence 4689999999999999999874 11122 9999997732 456788889999752 3334443
Q ss_pred CCC-cEeEEEEeC-CCC---chhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 195 YPG-PLMLVSILC-PDP---HFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 195 ~~~-~~d~V~~~~-~~~---~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
+.+ .-|+|+..- ||. |.-+.+-.. -+..+.|+-...+|||||.|+
T Consensus 111 fggekAdlVvcDGAPDvTGlHd~DEy~Q~-qLllaAl~i~t~Vlk~Gg~FV 160 (294)
T KOG1099|consen 111 FGGEKADLVVCDGAPDVTGLHDLDEYVQA-QLLLAALNIATCVLKPGGSFV 160 (294)
T ss_pred hCCCCccEEEeCCCCCccccccHHHHHHH-HHHHHHHHHHhheecCCCeee
Confidence 443 457666532 221 111111011 122356677789999999985
No 283
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=95.69 E-value=0.0056 Score=54.11 Aligned_cols=76 Identities=11% Similarity=-0.035 Sum_probs=54.6
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCCCcEeEE
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYPGPLMLV 202 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~~~~d~V 202 (241)
.+.+|+|+-.|-|.+++.+.-.-.. ..|+++|.+|..++..+++++.++. ....++.+|-.. .-++...|.|
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agA-k~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~------~~~~~~AdrV 266 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGA-KTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRN------PKPRLRADRV 266 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCc-cEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccc------cCccccchhe
Confidence 4689999999999999954333333 4799999999999999999988765 234555565543 2245666777
Q ss_pred EEeC
Q 026219 203 SILC 206 (241)
Q Consensus 203 ~~~~ 206 (241)
.+-.
T Consensus 267 nLGL 270 (351)
T KOG1227|consen 267 NLGL 270 (351)
T ss_pred eecc
Confidence 6543
No 284
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=95.67 E-value=0.075 Score=48.22 Aligned_cols=97 Identities=20% Similarity=0.154 Sum_probs=63.5
Q ss_pred CCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEc-cccchHHhhccCCCCcEeEE
Q 026219 125 LPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFA-NASVSFKQLVSSYPGPLMLV 202 (241)
Q Consensus 125 ~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~-D~~~~~~~~~~~~~~~~d~V 202 (241)
+.+|+=+||| .|..+..+++..+. .+|+.+|++++.++.|++.. +...+..... |......... ...-+|.+
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga-~~Viv~d~~~~Rl~~A~~~~---g~~~~~~~~~~~~~~~~~~~t--~g~g~D~v 242 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGA-SVVIVVDRSPERLELAKEAG---GADVVVNPSEDDAGAEILELT--GGRGADVV 242 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCHHHHHHHHHhC---CCeEeecCccccHHHHHHHHh--CCCCCCEE
Confidence 3489999999 58888888998877 79999999999999997632 2111111111 2211111111 01247766
Q ss_pred EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
+-.-..+ ..++.+.+.++|||++.+
T Consensus 243 ie~~G~~--------------~~~~~ai~~~r~gG~v~~ 267 (350)
T COG1063 243 IEAVGSP--------------PALDQALEALRPGGTVVV 267 (350)
T ss_pred EECCCCH--------------HHHHHHHHHhcCCCEEEE
Confidence 5444422 788889999999999864
No 285
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=95.57 E-value=0.046 Score=41.57 Aligned_cols=86 Identities=17% Similarity=0.176 Sum_probs=56.9
Q ss_pred CccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCC-CcEeEEEEeCCCCchh
Q 026219 134 GSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYP-GPLMLVSILCPDPHFK 212 (241)
Q Consensus 134 GtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~-~~~d~V~~~~~~~~~~ 212 (241)
|.|..+..+++... .+|+++|.++.-.+.+++ .|.. .++..+-.+..+.+....+ ..+|.|+-....+
T Consensus 1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~~----~Ga~--~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~--- 69 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAKE----LGAD--HVIDYSDDDFVEQIRELTGGRGVDVVIDCVGSG--- 69 (130)
T ss_dssp HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHH----TTES--EEEETTTSSHHHHHHHHTTTSSEEEEEESSSSH---
T ss_pred ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHHh----hccc--ccccccccccccccccccccccceEEEEecCcH---
Confidence 56889999999875 699999999998888754 4532 2333222222222222223 4688766544323
Q ss_pred hhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 213 KKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 213 ~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
..++....+|+|||++.+
T Consensus 70 -----------~~~~~~~~~l~~~G~~v~ 87 (130)
T PF00107_consen 70 -----------DTLQEAIKLLRPGGRIVV 87 (130)
T ss_dssp -----------HHHHHHHHHEEEEEEEEE
T ss_pred -----------HHHHHHHHHhccCCEEEE
Confidence 888999999999999864
No 286
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=95.52 E-value=0.036 Score=49.42 Aligned_cols=36 Identities=22% Similarity=0.121 Sum_probs=30.2
Q ss_pred CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHH
Q 026219 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVK 163 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~ 163 (241)
..+||=-|||.|.++..|+..+.. +-|=|.|--|+-
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~~---~qGNEfSy~Mli 186 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGFK---CQGNEFSYFMLI 186 (369)
T ss_pred CceEEecCCCchhHHHHHHHhccc---ccccHHHHHHHH
Confidence 578999999999999999999765 557788877754
No 287
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=95.40 E-value=0.024 Score=53.23 Aligned_cols=115 Identities=14% Similarity=0.080 Sum_probs=77.8
Q ss_pred CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccC--CCCcEeEE
Q 026219 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSS--YPGPLMLV 202 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~--~~~~~d~V 202 (241)
...+|=||-|.|.+...+...+|. ..+++|++.|.|++.|+++..-..-.+.++...|..+.+...... .+..+|++
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~~p~-~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl 374 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMSLPK-FQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDVL 374 (482)
T ss_pred cCcEEEEecCCCccccceeeecCc-cceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcEE
Confidence 567999999999999999888887 799999999999999998764322223445556666554443322 34668877
Q ss_pred EEeC--CCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 203 SILC--PDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 203 ~~~~--~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
.+.. ++++.-.- --.-.+.+.+++.+...|.|.|.++|
T Consensus 375 ~~dvds~d~~g~~~-pp~~fva~~~l~~~k~~l~p~g~f~i 414 (482)
T KOG2352|consen 375 MVDVDSKDSHGMQC-PPPAFVAQVALQPVKMILPPRGMFII 414 (482)
T ss_pred EEECCCCCcccCcC-CchHHHHHHHHHHHhhccCccceEEE
Confidence 6542 21110000 00112557899999999999998875
No 288
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.37 E-value=0.02 Score=53.79 Aligned_cols=105 Identities=13% Similarity=0.151 Sum_probs=79.4
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCC-EEEEEccccchHHhhccCCCCcEeEE
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IHFLFANASVSFKQLVSSYPGPLMLV 202 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~n-i~~~~~D~~~~~~~~~~~~~~~~d~V 202 (241)
+..+|||.=|++|.-++..++..++...|++-|.++..++..++|++.++..+ ++.-+.|+...--. .......||+|
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~-~~~~~~~FDvI 187 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYE-HPMVAKFFDVI 187 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHh-ccccccccceE
Confidence 35789999999999999999998876789999999999999999999887654 66777888642111 11123567876
Q ss_pred EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
-+. |+... ..||+.+.+.++.||.+.+
T Consensus 188 DLD---PyGs~---------s~FLDsAvqav~~gGLL~v 214 (525)
T KOG1253|consen 188 DLD---PYGSP---------SPFLDSAVQAVRDGGLLCV 214 (525)
T ss_pred ecC---CCCCc---------cHHHHHHHHHhhcCCEEEE
Confidence 543 22211 3899999999999999864
No 289
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.13 E-value=0.11 Score=47.00 Aligned_cols=91 Identities=13% Similarity=0.195 Sum_probs=60.4
Q ss_pred CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219 124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV 202 (241)
Q Consensus 124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V 202 (241)
++.+|+=+|+| .|..++.+|+... .+|+++|+|++-.+.|++ .|-+ .++...-.+..... .+.+|.+
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~----lGAd--~~i~~~~~~~~~~~----~~~~d~i 233 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAKK----LGAD--HVINSSDSDALEAV----KEIADAI 233 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHH----hCCc--EEEEcCCchhhHHh----HhhCcEE
Confidence 36777777777 6688888888653 689999999998888765 3432 23332111111122 1237776
Q ss_pred EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
+..-+ + ..++...+.|++||++.+
T Consensus 234 i~tv~-~--------------~~~~~~l~~l~~~G~~v~ 257 (339)
T COG1064 234 IDTVG-P--------------ATLEPSLKALRRGGTLVL 257 (339)
T ss_pred EECCC-h--------------hhHHHHHHHHhcCCEEEE
Confidence 65544 3 677788999999999864
No 290
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=95.02 E-value=0.031 Score=50.41 Aligned_cols=111 Identities=18% Similarity=0.129 Sum_probs=75.7
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHH-------HHHHHHHHhCC-CC-EEEEEccccchHHhhccC
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVK-------RAEFWVQELAL-SN-IHFLFANASVSFKQLVSS 194 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~-------~a~~~~~~~~l-~n-i~~~~~D~~~~~~~~~~~ 194 (241)
++..|.|-=-|||+++...+.- + +.|+|.||+-.++. ..+.|.+++|. +. +.++.+|.... .+-+
T Consensus 208 pGdivyDPFVGTGslLvsaa~F--G-a~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~--~~rs- 281 (421)
T KOG2671|consen 208 PGDIVYDPFVGTGSLLVSAAHF--G-AYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNP--PLRS- 281 (421)
T ss_pred CCCEEecCccccCceeeehhhh--c-ceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCc--chhh-
Confidence 4789999999999999998885 3 57999999988877 44567888885 33 67888888762 1111
Q ss_pred CCCcEeEEEEeCCCC-------------------------chhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 195 YPGPLMLVSILCPDP-------------------------HFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 195 ~~~~~d~V~~~~~~~-------------------------~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
...||.|+...|-- .+...+.....+...+|.-.++.|..||++.+
T Consensus 282 -n~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~ 352 (421)
T KOG2671|consen 282 -NLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVF 352 (421)
T ss_pred -cceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEE
Confidence 35678777653310 00011111112445788888999999998864
No 291
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=94.86 E-value=0.078 Score=45.55 Aligned_cols=73 Identities=21% Similarity=0.178 Sum_probs=46.8
Q ss_pred CcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHH---HHHhC-C-----CCEEEEEccccchHHhhccCCC
Q 026219 126 PLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFW---VQELA-L-----SNIHFLFANASVSFKQLVSSYP 196 (241)
Q Consensus 126 ~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~---~~~~~-l-----~ni~~~~~D~~~~~~~~~~~~~ 196 (241)
.+|||.=+|-|.-++.++.. + ++|+++|.||-+....+.- ..... . .+++++++|..+++. .++
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~--G-~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~----~~~ 149 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASL--G-CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLR----QPD 149 (234)
T ss_dssp --EEETT-TTSHHHHHHHHH--T---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCC----CHS
T ss_pred CEEEECCCcchHHHHHHHcc--C-CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHh----hcC
Confidence 58999999999999999976 5 6899999999876665543 32221 1 369999999998644 346
Q ss_pred CcEeEEEEe
Q 026219 197 GPLMLVSIL 205 (241)
Q Consensus 197 ~~~d~V~~~ 205 (241)
.++|+|++.
T Consensus 150 ~s~DVVY~D 158 (234)
T PF04445_consen 150 NSFDVVYFD 158 (234)
T ss_dssp S--SEEEE-
T ss_pred CCCCEEEEC
Confidence 889988764
No 292
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=94.82 E-value=0.11 Score=47.28 Aligned_cols=93 Identities=22% Similarity=0.225 Sum_probs=58.5
Q ss_pred ccccccccCCcccccccccCccceecccccCCCCCCCCCC-------h----hhhHHHhcCCCCCcEEEEcCCccHHHHH
Q 026219 73 ALEFAELNLPVSNKITGELGHARIRQHVNPLSSSFTVPAP-------I----PDWSEVYKNPTLPLMVDIGSGSGRFLIW 141 (241)
Q Consensus 73 ~~e~~~l~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~-------~----~~~~~~~~~~~~~~VLDIGCGtG~~~~~ 141 (241)
..+++++-+- -++.|||+.+..+-.-.|.++-|.. + ...++.++.|..-.++|||.|.|.++..
T Consensus 20 f~~fM~~~L~-----~p~~GYYs~~~~~G~~GDFiTApels~lFGella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~D 94 (370)
T COG1565 20 FSDFMELALY-----DPEHGYYSSAVKIGRKGDFITAPELSQLFGELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASD 94 (370)
T ss_pred HHHHHHHHHc-----CCCCcccccchhccccCCeeechhHHHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHH
Confidence 4456655552 1245666664444333344433321 1 1123445556667899999999999988
Q ss_pred HHHHC----C----CCcEEEEEeCCHHHHHHHHHHHHH
Q 026219 142 LARRN----P----DSGNYLGLEIRQKLVKRAEFWVQE 171 (241)
Q Consensus 142 la~~~----p----~~~~v~giDis~~~v~~a~~~~~~ 171 (241)
+.+.. | . ..+.-||+|++..++=+++++.
T Consensus 95 iL~~l~~L~P~~~~~-~~~~iiE~s~~L~~~Qk~~L~~ 131 (370)
T COG1565 95 ILRTLRRLYPELYEA-LSYYIIEPSPELRARQKETLKA 131 (370)
T ss_pred HHHHHHHhCHHHHhc-ceEEEEecCHHHHHHHHHHHhc
Confidence 76542 3 4 6899999999998877766654
No 293
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=94.55 E-value=0.23 Score=44.40 Aligned_cols=95 Identities=7% Similarity=0.090 Sum_probs=57.7
Q ss_pred CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219 124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV 202 (241)
Q Consensus 124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V 202 (241)
.+.+||=+|+| .|..+..+++.... .+|+++|.+++.++.+++ .|... ++..+-.+ +..... ..+.+|.|
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~-~~Vi~~~~~~~~~~~a~~----lGa~~--vi~~~~~~-~~~~~~-~~g~~D~v 239 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGA-AEIVCADVSPRSLSLARE----MGADK--LVNPQNDD-LDHYKA-EKGYFDVS 239 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEEeCCHHHHHHHHH----cCCcE--EecCCccc-HHHHhc-cCCCCCEE
Confidence 36778888887 56777778887543 369999999998887754 35322 22111011 111111 12347766
Q ss_pred EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
+-....+ ..++...+.|++||++++
T Consensus 240 id~~G~~--------------~~~~~~~~~l~~~G~iv~ 264 (343)
T PRK09880 240 FEVSGHP--------------SSINTCLEVTRAKGVMVQ 264 (343)
T ss_pred EECCCCH--------------HHHHHHHHHhhcCCEEEE
Confidence 5333322 567788899999998863
No 294
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=94.53 E-value=0.075 Score=46.64 Aligned_cols=71 Identities=15% Similarity=0.062 Sum_probs=50.4
Q ss_pred cEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEEeC
Q 026219 127 LMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSILC 206 (241)
Q Consensus 127 ~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~~ 206 (241)
+++|+.||.|....-+.+..- ..++++|+++.+++..+.|. ++. ++.+|+.+....-. ...+|+++..+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~--~~v~a~e~~~~a~~~~~~N~-----~~~-~~~~Di~~~~~~~~---~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGF--EIVAANEIDKSAAETYEANF-----PNK-LIEGDITKIDEKDF---IPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHHcCC--EEEEEEeCCHHHHHHHHHhC-----CCC-CccCccccCchhhc---CCCCCEEEeCC
Confidence 589999999999888877642 36899999999998877654 222 56778876322111 24588887776
Q ss_pred CC
Q 026219 207 PD 208 (241)
Q Consensus 207 ~~ 208 (241)
|-
T Consensus 71 PC 72 (275)
T cd00315 71 PC 72 (275)
T ss_pred CC
Confidence 54
No 295
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=94.39 E-value=0.26 Score=36.79 Aligned_cols=68 Identities=18% Similarity=0.164 Sum_probs=43.7
Q ss_pred CCccHHHHHHHHHCCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEEeCCC
Q 026219 133 SGSGRFLIWLARRNPDSG-NYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSILCPD 208 (241)
Q Consensus 133 CGtG~~~~~la~~~p~~~-~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~~~~ 208 (241)
||.|.++..+++...... .|+.+|.+++.++.+++ ..+.++.+|+.+.- .+....-...+.+++...+
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~-------~~~~~i~gd~~~~~-~l~~a~i~~a~~vv~~~~~ 72 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE-------EGVEVIYGDATDPE-VLERAGIEKADAVVILTDD 72 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH-------TTSEEEES-TTSHH-HHHHTTGGCESEEEEESSS
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh-------cccccccccchhhh-HHhhcCccccCEEEEccCC
Confidence 677888888877653223 79999999999887754 23679999998631 1111112456777777654
No 296
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=94.12 E-value=0.54 Score=41.31 Aligned_cols=95 Identities=15% Similarity=0.207 Sum_probs=58.6
Q ss_pred CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219 124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV 202 (241)
Q Consensus 124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V 202 (241)
.+.+||..|+| .|..+..+++... .+|++++.+++..+.+++ .+.+. ++...-..............+|.+
T Consensus 165 ~~~~vli~g~g~vG~~~~~la~~~G--~~V~~~~~s~~~~~~~~~----~g~~~--~~~~~~~~~~~~~~~~~~~~~D~v 236 (338)
T cd08254 165 PGETVLVIGLGGLGLNAVQIAKAMG--AAVIAVDIKEEKLELAKE----LGADE--VLNSLDDSPKDKKAAGLGGGFDVI 236 (338)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHH----hCCCE--EEcCCCcCHHHHHHHhcCCCceEE
Confidence 45678888887 5888888888764 579999999998877643 34422 111111111111101123567865
Q ss_pred EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
+ .+... ...++++.+.|+++|+++
T Consensus 237 i-d~~g~-------------~~~~~~~~~~l~~~G~~v 260 (338)
T cd08254 237 F-DFVGT-------------QPTFEDAQKAVKPGGRIV 260 (338)
T ss_pred E-ECCCC-------------HHHHHHHHHHhhcCCEEE
Confidence 4 33221 267888999999999986
No 297
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=94.01 E-value=0.12 Score=44.94 Aligned_cols=103 Identities=17% Similarity=0.159 Sum_probs=58.2
Q ss_pred CCcEEEEcCCccHHHHHHHH---HC--CCCcEEEEEeCCH--------------------------HHHHHHHHHHHHhC
Q 026219 125 LPLMVDIGSGSGRFLIWLAR---RN--PDSGNYLGLEIRQ--------------------------KLVKRAEFWVQELA 173 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~---~~--p~~~~v~giDis~--------------------------~~v~~a~~~~~~~~ 173 (241)
.+.|+|.||=.|..++.++. .+ ++ -++++.|-=+ ...+..++++.+.+
T Consensus 75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~-R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g 153 (248)
T PF05711_consen 75 PGDIVECGVWRGGSSILMRAVLEAYGNPD-RRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG 153 (248)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHCTTTTS---EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred CeEEEEEeeCCCHHHHHHHHHHHHhCCCC-CEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence 47899999999987765543 22 33 4689988521 12333444444445
Q ss_pred C--CCEEEEEccccchHHhhccCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 174 L--SNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 174 l--~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
+ ++++++.|++.++++.. +...+.++.+. .|-. ++. ...|+.++..|.|||.|+|
T Consensus 154 l~~~~v~~vkG~F~dTLp~~---p~~~IAll~lD-~DlY--esT-------~~aLe~lyprl~~GGiIi~ 210 (248)
T PF05711_consen 154 LLDDNVRFVKGWFPDTLPDA---PIERIALLHLD-CDLY--EST-------KDALEFLYPRLSPGGIIIF 210 (248)
T ss_dssp TSSTTEEEEES-HHHHCCC----TT--EEEEEE----SH--HHH-------HHHHHHHGGGEEEEEEEEE
T ss_pred CCcccEEEECCcchhhhccC---CCccEEEEEEe-ccch--HHH-------HHHHHHHHhhcCCCeEEEE
Confidence 4 47999999998765432 23444443333 2221 222 4899999999999999986
No 298
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=93.98 E-value=0.045 Score=51.67 Aligned_cols=96 Identities=18% Similarity=0.167 Sum_probs=56.3
Q ss_pred CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCH----HHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEe
Q 026219 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQ----KLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLM 200 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~----~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d 200 (241)
-..|+|...|.|.++..|... . |+-+-..| +-+... -..|+- -.. -|--+ .++.+|..+|
T Consensus 366 iRNVMDMnAg~GGFAAAL~~~--~---VWVMNVVP~~~~ntL~vI----ydRGLI--G~y-hDWCE----~fsTYPRTYD 429 (506)
T PF03141_consen 366 IRNVMDMNAGYGGFAAALIDD--P---VWVMNVVPVSGPNTLPVI----YDRGLI--GVY-HDWCE----AFSTYPRTYD 429 (506)
T ss_pred eeeeeeecccccHHHHHhccC--C---ceEEEecccCCCCcchhh----hhcccc--hhc-cchhh----ccCCCCcchh
Confidence 357999999999999998764 2 22222222 222221 112331 111 12212 2566789999
Q ss_pred EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
++........ .+.|...+.++-|+-|+|+|||.++|
T Consensus 430 LlHA~~lfs~-----~~~rC~~~~illEmDRILRP~G~~ii 465 (506)
T PF03141_consen 430 LLHADGLFSL-----YKDRCEMEDILLEMDRILRPGGWVII 465 (506)
T ss_pred heehhhhhhh-----hcccccHHHHHHHhHhhcCCCceEEE
Confidence 8743321111 12345567999999999999999986
No 299
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=93.96 E-value=0.45 Score=43.91 Aligned_cols=18 Identities=33% Similarity=0.374 Sum_probs=14.9
Q ss_pred CCcEEEEcCCccHHHHHH
Q 026219 125 LPLMVDIGSGSGRFLIWL 142 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~l 142 (241)
.-+|+|+|||+|.+++.+
T Consensus 64 ~~~iaDlGcs~G~ntl~~ 81 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHI 81 (386)
T ss_pred ceeEEEecCCCCccHHHH
Confidence 468999999999777654
No 300
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=93.80 E-value=0.41 Score=42.93 Aligned_cols=90 Identities=14% Similarity=0.190 Sum_probs=54.0
Q ss_pred CCCcEEEEcCC-ccHHHHHHHHH-CCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeE
Q 026219 124 TLPLMVDIGSG-SGRFLIWLARR-NPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLML 201 (241)
Q Consensus 124 ~~~~VLDIGCG-tG~~~~~la~~-~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~ 201 (241)
.+.+||=+||| .|..+..++++ ... .+|+++|.+++.++.+++ .+. ...+ .+. .+ +..+|.
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~-~~vi~~~~~~~k~~~a~~----~~~--~~~~-~~~-------~~--~~g~d~ 225 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPE-SKLVVFGKHQEKLDLFSF----ADE--TYLI-DDI-------PE--DLAVDH 225 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCC-CcEEEEeCcHhHHHHHhh----cCc--eeeh-hhh-------hh--ccCCcE
Confidence 46889999987 45556666765 444 579999999988887753 221 1111 011 11 112565
Q ss_pred EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
|+=.-..+. ....++...++|++||++++
T Consensus 226 viD~~G~~~-----------~~~~~~~~~~~l~~~G~iv~ 254 (341)
T cd08237 226 AFECVGGRG-----------SQSAINQIIDYIRPQGTIGL 254 (341)
T ss_pred EEECCCCCc-----------cHHHHHHHHHhCcCCcEEEE
Confidence 442222110 02678889999999999863
No 301
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.74 E-value=0.21 Score=44.82 Aligned_cols=97 Identities=10% Similarity=0.082 Sum_probs=62.5
Q ss_pred CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEc-c-cc---chHHhhccCCCC
Q 026219 124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFA-N-AS---VSFKQLVSSYPG 197 (241)
Q Consensus 124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~-D-~~---~~~~~~~~~~~~ 197 (241)
.+.+||=+|+| .|-.+...|+.+.- .+|+.+|++++.++.|++ .|.+.+..... + .. +.+....+ +.
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA-~~VVi~d~~~~Rle~Ak~----~Ga~~~~~~~~~~~~~~~~~~v~~~~g--~~ 241 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGA-SDVVITDLVANRLELAKK----FGATVTDPSSHKSSPQELAELVEKALG--KK 241 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCC-CcEEEeecCHHHHHHHHH----hCCeEEeeccccccHHHHHHHHHhhcc--cc
Confidence 47899999999 68888889998877 789999999999999987 35443322221 1 11 11122221 12
Q ss_pred cEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 198 PLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 198 ~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
.+|.++ ...-- +..++.....+++||.+.+
T Consensus 242 ~~d~~~-dCsG~-------------~~~~~aai~a~r~gGt~vl 271 (354)
T KOG0024|consen 242 QPDVTF-DCSGA-------------EVTIRAAIKATRSGGTVVL 271 (354)
T ss_pred CCCeEE-EccCc-------------hHHHHHHHHHhccCCEEEE
Confidence 345433 33221 2566677888899998653
No 302
>PRK11524 putative methyltransferase; Provisional
Probab=93.70 E-value=0.095 Score=46.17 Aligned_cols=63 Identities=14% Similarity=0.046 Sum_probs=40.2
Q ss_pred CEEEEEccccchHHhhccCCCCcEeEEEEeCCCCchhh---h-----hhhcccchHHHHHHHHhccccCCEEEc
Q 026219 176 NIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKK---K-----HHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 176 ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~~~~~~~~~---~-----~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
+.+++++|+.+.+..+ +++++|+|++..|-..... . ..+.......++.++.++|||||.|++
T Consensus 8 ~~~i~~gD~~~~l~~l---~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i 78 (284)
T PRK11524 8 AKTIIHGDALTELKKI---PSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYI 78 (284)
T ss_pred CCEEEeccHHHHHHhc---ccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEE
Confidence 4578999998754332 4688999988654210000 0 000111235789999999999999875
No 303
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=93.58 E-value=1.1 Score=38.07 Aligned_cols=78 Identities=18% Similarity=0.224 Sum_probs=53.5
Q ss_pred CCCCcEEEEcCCcc----HHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCC-EEEEEccccc-hHHhhccCCC
Q 026219 123 PTLPLMVDIGSGSG----RFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IHFLFANASV-SFKQLVSSYP 196 (241)
Q Consensus 123 ~~~~~VLDIGCGtG----~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~n-i~~~~~D~~~-~~~~~~~~~~ 196 (241)
.+...|+++.|+-| .+++..|.+.-+ ++++.|-.++.-....++.+...++.+ ++|+.+|..+ .++. +
T Consensus 40 ~nAkliVe~~s~g~~~~ttiaLaaAAr~Tg-GR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~----~- 113 (218)
T PF07279_consen 40 WNAKLIVEAWSSGGAISTTIALAAAARQTG-GRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPG----L- 113 (218)
T ss_pred ccceEEEEEecCCCchHhHHHHHHHHHhcC-CeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhh----c-
Confidence 34678999977654 334444555556 799999999888888888887777755 6999998543 3222 2
Q ss_pred CcEeEEEEeC
Q 026219 197 GPLMLVSILC 206 (241)
Q Consensus 197 ~~~d~V~~~~ 206 (241)
..+|.+++..
T Consensus 114 ~~iDF~vVDc 123 (218)
T PF07279_consen 114 KGIDFVVVDC 123 (218)
T ss_pred cCCCEEEEeC
Confidence 3467666665
No 304
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=93.44 E-value=0.11 Score=44.51 Aligned_cols=83 Identities=14% Similarity=0.145 Sum_probs=54.3
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHh-CCC-CEEEEE-ccccchHHhhccCCCCcEe
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQEL-ALS-NIHFLF-ANASVSFKQLVSSYPGPLM 200 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~-~l~-ni~~~~-~D~~~~~~~~~~~~~~~~d 200 (241)
++-++||||.|.-.+=-.+-.+-=+ ++++|.|+++..++.|+..+..+ ++. .|++.. .|-...++.+.. ..+.||
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYg-wrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig-~nE~yd 155 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYG-WRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIG-KNERYD 155 (292)
T ss_pred CceEEEeeccCcccccccccceeec-ceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCcccccccccc-ccceee
Confidence 4678999999876544333333224 78999999999999999999887 554 366643 333222322222 246788
Q ss_pred EEEEeCCC
Q 026219 201 LVSILCPD 208 (241)
Q Consensus 201 ~V~~~~~~ 208 (241)
.+..+.|.
T Consensus 156 ~tlCNPPF 163 (292)
T COG3129 156 ATLCNPPF 163 (292)
T ss_pred eEecCCCc
Confidence 87777543
No 305
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=93.43 E-value=0.046 Score=50.61 Aligned_cols=61 Identities=13% Similarity=0.150 Sum_probs=54.3
Q ss_pred CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC--CEEEEEccccchH
Q 026219 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS--NIHFLFANASVSF 188 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~--ni~~~~~D~~~~~ 188 (241)
+..|-|+-||.|-+++.++++ + +.|++-|.+++++++.+.++..+.+. +++++..|+.+.+
T Consensus 250 gevv~D~FaGvGPfa~Pa~kK--~-crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Fl 312 (495)
T KOG2078|consen 250 GEVVCDVFAGVGPFALPAAKK--G-CRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFL 312 (495)
T ss_pred cchhhhhhcCcCccccchhhc--C-cEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHh
Confidence 689999999999999999887 5 89999999999999999999887763 5899999987754
No 306
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=93.33 E-value=0.14 Score=49.47 Aligned_cols=102 Identities=11% Similarity=0.200 Sum_probs=62.5
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccch-----HHhhccCCCCc
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVS-----FKQLVSSYPGP 198 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~-----~~~~~~~~~~~ 198 (241)
+...|||+||..|.++...++..|....|+|||+-|- ..++|+.-++.|++.. +..+... ..
T Consensus 44 ~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi-----------kp~~~c~t~v~dIttd~cr~~l~k~l~t--~~ 110 (780)
T KOG1098|consen 44 KAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI-----------KPIPNCDTLVEDITTDECRSKLRKILKT--WK 110 (780)
T ss_pred ccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec-----------ccCCccchhhhhhhHHHHHHHHHHHHHh--CC
Confidence 3688999999999999999999886578999999873 1346766666777531 1222221 22
Q ss_pred EeEEEEeC----CCCchhhhhhhcccchHHHHHHHHhccccCCEE
Q 026219 199 LMLVSILC----PDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKV 239 (241)
Q Consensus 199 ~d~V~~~~----~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l 239 (241)
.|+|...- ...|..+..... .+.-..++-....|+.||.+
T Consensus 111 advVLhDgapnVg~~w~~DA~~q~-~L~l~al~LA~~~l~~~g~f 154 (780)
T KOG1098|consen 111 ADVVLHDGAPNVGGNWVQDAFQQA-CLTLRALKLATEFLAKGGTF 154 (780)
T ss_pred CcEEeecCCCccchhHHHHHHHhh-HHHHHHHHHHHHHHHhcCcc
Confidence 35443321 113443332111 12224556667778888875
No 307
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=93.31 E-value=0.13 Score=44.47 Aligned_cols=54 Identities=26% Similarity=0.273 Sum_probs=38.0
Q ss_pred HHhcCCC-CCcEEEEcCCccHHHHHHHHHCCC-------CcEEEEEeCCHHHHHHHHHHHHH
Q 026219 118 EVYKNPT-LPLMVDIGSGSGRFLIWLARRNPD-------SGNYLGLEIRQKLVKRAEFWVQE 171 (241)
Q Consensus 118 ~~~~~~~-~~~VLDIGCGtG~~~~~la~~~p~-------~~~v~giDis~~~v~~a~~~~~~ 171 (241)
+....|. ..+|+|+|.|+|.++..+.+.... ..+++-||+|+.+.+.-++++..
T Consensus 11 ~~~~~p~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 11 EQLGRPSEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp HHCT--SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred HHcCCCCcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 3343343 379999999999999998875432 15899999999998888877654
No 308
>PRK13699 putative methylase; Provisional
Probab=93.21 E-value=0.12 Score=44.07 Aligned_cols=62 Identities=10% Similarity=0.129 Sum_probs=38.7
Q ss_pred EEEEEccccchHHhhccCCCCcEeEEEEeCCCCc-hhhhhhh------cccchHHHHHHHHhccccCCEEEc
Q 026219 177 IHFLFANASVSFKQLVSSYPGPLMLVSILCPDPH-FKKKHHK------RRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 177 i~~~~~D~~~~~~~~~~~~~~~~d~V~~~~~~~~-~~~~~~~------~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
.+++++|+.+.+..+ +++++|+|+...|--- .+....+ .......++++++|+|||||.+++
T Consensus 2 ~~l~~gD~le~l~~l---pd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 2 SRFILGNCIDVMARF---PDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred CeEEechHHHHHHhC---CccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 367889998765443 5799999876643210 0000000 001235788999999999998763
No 309
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=93.19 E-value=1.2 Score=37.38 Aligned_cols=96 Identities=16% Similarity=0.157 Sum_probs=57.9
Q ss_pred CCCCcEEEEcCCc-cHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeE
Q 026219 123 PTLPLMVDIGSGS-GRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLML 201 (241)
Q Consensus 123 ~~~~~VLDIGCGt-G~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~ 201 (241)
.++.+||-.|+|+ |..+..+++... .++++++.+++..+.+++ .+... ++...-.+............+|.
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~----~g~~~--~~~~~~~~~~~~~~~~~~~~~d~ 204 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAG--ARVIVTDRSDEKLELAKE----LGADH--VIDYKEEDLEEELRLTGGGGADV 204 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHH----hCCce--eccCCcCCHHHHHHHhcCCCCCE
Confidence 3578899999995 777777777654 589999999887776643 23221 12111111111111112355787
Q ss_pred EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
++.....+ ..++.+.+.|+++|+++
T Consensus 205 vi~~~~~~--------------~~~~~~~~~l~~~G~~v 229 (271)
T cd05188 205 VIDAVGGP--------------ETLAQALRLLRPGGRIV 229 (271)
T ss_pred EEECCCCH--------------HHHHHHHHhcccCCEEE
Confidence 76543321 45667788899999876
No 310
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=92.99 E-value=0.22 Score=45.67 Aligned_cols=67 Identities=12% Similarity=0.028 Sum_probs=58.4
Q ss_pred hcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccc
Q 026219 120 YKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV 186 (241)
Q Consensus 120 ~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~ 186 (241)
+.++.++.|+|++|-.|.-+.+++.-..+.+.++|.|.+.+..+..++-++..|.+++..+.+|+..
T Consensus 209 l~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~ 275 (413)
T KOG2360|consen 209 LDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLN 275 (413)
T ss_pred cCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCccccccccccC
Confidence 4445679999999999999999998766448999999999999999998888898888888999986
No 311
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=92.91 E-value=0.86 Score=43.66 Aligned_cols=42 Identities=19% Similarity=0.180 Sum_probs=35.0
Q ss_pred CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHH
Q 026219 124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEF 167 (241)
Q Consensus 124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~ 167 (241)
.+.+|+=+|+| .|..++..++... ..|+++|++++.++.+++
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lG--A~V~a~D~~~~rle~aes 206 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLG--AIVRAFDTRPEVAEQVES 206 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence 47899999999 6778888888764 479999999998888765
No 312
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=92.53 E-value=0.4 Score=42.15 Aligned_cols=70 Identities=14% Similarity=0.053 Sum_probs=49.9
Q ss_pred cEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEEeC
Q 026219 127 LMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSILC 206 (241)
Q Consensus 127 ~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~~ 206 (241)
+++|+-||.|.+..-+.+..- -.+.++|+++.+++.-+.|. + ....+|+.+.....++ . .+|+++..+
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~--~~~~a~e~~~~a~~~y~~N~-----~--~~~~~Di~~~~~~~l~--~-~~D~l~ggp 69 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGF--EVVWAVEIDPDACETYKANF-----P--EVICGDITEIDPSDLP--K-DVDLLIGGP 69 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTE--EEEEEEESSHHHHHHHHHHH-----T--EEEESHGGGCHHHHHH--H-T-SEEEEE-
T ss_pred cEEEEccCccHHHHHHHhcCc--EEEEEeecCHHHHHhhhhcc-----c--cccccccccccccccc--c-cceEEEecc
Confidence 589999999999999988753 36899999999888877665 2 7888999875433332 2 588887776
Q ss_pred CC
Q 026219 207 PD 208 (241)
Q Consensus 207 ~~ 208 (241)
|-
T Consensus 70 PC 71 (335)
T PF00145_consen 70 PC 71 (335)
T ss_dssp --
T ss_pred CC
Confidence 53
No 313
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=92.49 E-value=1.1 Score=40.63 Aligned_cols=96 Identities=13% Similarity=0.098 Sum_probs=55.9
Q ss_pred CCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219 125 LPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS 203 (241)
Q Consensus 125 ~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~ 203 (241)
+.+||=+|+| .|..+..+++...- .+|+++|.+++..+.+++ .|.. .++..+-.+..+.+....++.+|.|+
T Consensus 192 g~~VlV~G~G~vG~~a~~lak~~G~-~~Vi~~~~~~~r~~~a~~----~Ga~--~~i~~~~~~~~~~i~~~~~~g~d~vi 264 (371)
T cd08281 192 GQSVAVVGLGGVGLSALLGAVAAGA-SQVVAVDLNEDKLALARE----LGAT--ATVNAGDPNAVEQVRELTGGGVDYAF 264 (371)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC-CcEEEEcCCHHHHHHHHH----cCCc--eEeCCCchhHHHHHHHHhCCCCCEEE
Confidence 5566668876 46667777776532 269999999998887754 3442 22221111111111111123467655
Q ss_pred EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
-....+ ..++...+.|++||++++
T Consensus 265 d~~G~~--------------~~~~~~~~~l~~~G~iv~ 288 (371)
T cd08281 265 EMAGSV--------------PALETAYEITRRGGTTVT 288 (371)
T ss_pred ECCCCh--------------HHHHHHHHHHhcCCEEEE
Confidence 332222 677778899999998763
No 314
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=92.47 E-value=0.94 Score=40.74 Aligned_cols=97 Identities=13% Similarity=0.044 Sum_probs=57.2
Q ss_pred CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCC-CcEeE
Q 026219 124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYP-GPLML 201 (241)
Q Consensus 124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~-~~~d~ 201 (241)
.+.+||=.|+| .|..+..+++...- ..|+++|.+++..+.+++ .|.+ .++...-.+....+....+ ..+|.
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~G~-~~Vi~~~~~~~~~~~~~~----~Ga~--~~i~~~~~~~~~~i~~~~~~~g~d~ 248 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALAGA-SKIIAVDIDDRKLEWARE----FGAT--HTVNSSGTDPVEAIRALTGGFGADV 248 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHH----cCCc--eEEcCCCcCHHHHHHHHhCCCCCCE
Confidence 46778888886 46777778887643 359999999998888743 3432 2221111111111111112 34676
Q ss_pred EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
|+-....+ ..++...+.|++||++++
T Consensus 249 vid~~g~~--------------~~~~~~~~~~~~~G~iv~ 274 (358)
T TIGR03451 249 VIDAVGRP--------------ETYKQAFYARDLAGTVVL 274 (358)
T ss_pred EEECCCCH--------------HHHHHHHHHhccCCEEEE
Confidence 55332222 567778889999998863
No 315
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=92.03 E-value=0.82 Score=40.39 Aligned_cols=87 Identities=15% Similarity=0.063 Sum_probs=63.3
Q ss_pred HHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCC
Q 026219 117 SEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYP 196 (241)
Q Consensus 117 ~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~ 196 (241)
....++..+..|+=+| ----+++.++-.+-. -+|.-+||++..++..++.+++.|++|++.+.-|+.+.++.-+ .
T Consensus 145 m~~RGDL~gK~I~vvG-DDDLtsia~aLt~mp-k~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~---~ 219 (354)
T COG1568 145 MYSRGDLEGKEIFVVG-DDDLTSIALALTGMP-KRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDL---K 219 (354)
T ss_pred eccccCcCCCeEEEEc-CchhhHHHHHhcCCC-ceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHH---H
Confidence 3334555677899999 545555555554423 3899999999999999999999999999999999988655432 4
Q ss_pred CcEeEEEEeCCC
Q 026219 197 GPLMLVSILCPD 208 (241)
Q Consensus 197 ~~~d~V~~~~~~ 208 (241)
..||.++...|.
T Consensus 220 ~kFDvfiTDPpe 231 (354)
T COG1568 220 RKFDVFITDPPE 231 (354)
T ss_pred hhCCeeecCchh
Confidence 678866544433
No 316
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=91.94 E-value=0.45 Score=45.40 Aligned_cols=100 Identities=10% Similarity=0.088 Sum_probs=68.2
Q ss_pred CCcEEEEcCCccHHHHHH---HHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCCCcEe
Q 026219 125 LPLMVDIGSGSGRFLIWL---ARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYPGPLM 200 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~l---a~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~~~~d 200 (241)
..+|+=+|.|-|-+.... ++......++++||.+|+++-..+.+- .... .+++++.+|..++ ..+..+.|
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n-~~~W~~~Vtii~~DMR~w-----~ap~eq~D 441 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRN-FECWDNRVTIISSDMRKW-----NAPREQAD 441 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhc-hhhhcCeeEEEecccccc-----CCchhhcc
Confidence 356889999999765543 333222378999999999988776632 2233 4699999999873 21236667
Q ss_pred EEE----EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 201 LVS----ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 201 ~V~----~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
+++ -.|.|- .+..+-|.-+-+.|||+|+.+
T Consensus 442 I~VSELLGSFGDN----------ELSPECLDG~q~fLkpdgIsI 475 (649)
T KOG0822|consen 442 IIVSELLGSFGDN----------ELSPECLDGAQKFLKPDGISI 475 (649)
T ss_pred chHHHhhccccCc----------cCCHHHHHHHHhhcCCCceEc
Confidence 653 244442 134599999999999998753
No 317
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=91.61 E-value=2 Score=37.49 Aligned_cols=105 Identities=11% Similarity=0.135 Sum_probs=65.5
Q ss_pred CCcEEEEcCCccHHHHHHHHHCCC---CcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCCCcEe
Q 026219 125 LPLMVDIGSGSGRFLIWLARRNPD---SGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYPGPLM 200 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~p~---~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~~~~d 200 (241)
...++|+|+|+-.-+..|...+.+ ....+.||+|...++...+.+...-. -.+.-+.+|....+..+ ++.-.
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~----~~~~~ 154 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAEL----PRGGR 154 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcc----cCCCe
Confidence 478999999999888877665422 25799999999988765554443221 13566778876543222 22222
Q ss_pred EEEEeC----CCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 201 LVSILC----PDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 201 ~V~~~~----~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
.+++.. .+-.+.+. ..++..+...|+||-.+.+
T Consensus 155 Rl~~flGStlGN~tp~e~--------~~Fl~~l~~a~~pGd~~Ll 191 (321)
T COG4301 155 RLFVFLGSTLGNLTPGEC--------AVFLTQLRGALRPGDYFLL 191 (321)
T ss_pred EEEEEecccccCCChHHH--------HHHHHHHHhcCCCcceEEE
Confidence 222211 11112222 4899999999999988764
No 318
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=91.57 E-value=1.1 Score=38.86 Aligned_cols=99 Identities=17% Similarity=0.280 Sum_probs=52.1
Q ss_pred CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC--CCE--EEEEcccc----chHHhhccCCC
Q 026219 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL--SNI--HFLFANAS----VSFKQLVSSYP 196 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l--~ni--~~~~~D~~----~~~~~~~~~~~ 196 (241)
...|||+|.|+|-.++..+... . .+|+-.|+.. .++..+.+...++. .+. .+.+.... ....... +
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~-~-~~v~ltD~~~-~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~---~ 160 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLL-G-AEVVLTDLPK-VVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRL---P 160 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHh-c-ceeccCCchh-hHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhcc---C
Confidence 4579999999996666666643 3 4677777644 44444444333221 111 22222211 0111112 1
Q ss_pred CcEeEEEEe---CCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 197 GPLMLVSIL---CPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 197 ~~~d~V~~~---~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
..+|.++.. |.+..+ +.++..+..+|..+|.++
T Consensus 161 ~~~DlilasDvvy~~~~~-----------e~Lv~tla~ll~~~~~i~ 196 (248)
T KOG2793|consen 161 NPFDLILASDVVYEEESF-----------EGLVKTLAFLLAKDGTIF 196 (248)
T ss_pred CcccEEEEeeeeecCCcc-----------hhHHHHHHHHHhcCCeEE
Confidence 116766432 222222 488888888888888655
No 319
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=90.85 E-value=1.3 Score=39.05 Aligned_cols=85 Identities=19% Similarity=0.247 Sum_probs=52.8
Q ss_pred CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219 124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV 202 (241)
Q Consensus 124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V 202 (241)
.+.++|=+||| .|.++..+++...- ..|+++|.+++.++.+... . ++ |..+ . ....+|.|
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~-~~v~~~~~~~~rl~~a~~~----~-----~i--~~~~---~----~~~g~Dvv 204 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGG-SPPAVWETNPRRRDGATGY----E-----VL--DPEK---D----PRRDYRAI 204 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCHHHHHhhhhc----c-----cc--Chhh---c----cCCCCCEE
Confidence 35678888987 67788888887654 3577889988776665321 1 11 1111 0 02235655
Q ss_pred EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
+=....+ ..++.+.+.|++||++++
T Consensus 205 id~~G~~--------------~~~~~~~~~l~~~G~iv~ 229 (308)
T TIGR01202 205 YDASGDP--------------SLIDTLVRRLAKGGEIVL 229 (308)
T ss_pred EECCCCH--------------HHHHHHHHhhhcCcEEEE
Confidence 4333222 667888999999999863
No 320
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=90.70 E-value=0.51 Score=43.52 Aligned_cols=61 Identities=11% Similarity=0.150 Sum_probs=46.2
Q ss_pred hCCCCEEEEEccccchHHhhccCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 172 LALSNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 172 ~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
.+++++++.++++.+.+... +++++|.+++.-...|+... ...+.++++.+.++|||+|++
T Consensus 272 ~~~drv~i~t~si~~~L~~~---~~~s~~~~vL~D~~Dwm~~~------~~~~~~~~l~~~~~pgaRV~~ 332 (380)
T PF11899_consen 272 ARLDRVRIHTDSIEEVLRRL---PPGSFDRFVLSDHMDWMDPE------QLNEEWQELARTARPGARVLW 332 (380)
T ss_pred cCCCeEEEEeccHHHHHHhC---CCCCeeEEEecchhhhCCHH------HHHHHHHHHHHHhCCCCEEEE
Confidence 35578999999998865442 47999988776555566543 236899999999999999974
No 321
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=90.67 E-value=2.8 Score=36.29 Aligned_cols=95 Identities=11% Similarity=-0.004 Sum_probs=55.5
Q ss_pred CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEE-ccccchHHhhccCCCCcEeE
Q 026219 124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLF-ANASVSFKQLVSSYPGPLML 201 (241)
Q Consensus 124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~-~D~~~~~~~~~~~~~~~~d~ 201 (241)
++.+||=+|+| .|..+..+++...- ..|+++|.+++..+.+++ .|... ++. .+..+.+.... ....+|.
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~-~~Vi~~~~~~~r~~~a~~----~Ga~~--~i~~~~~~~~~~~~~--~~~g~d~ 190 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGA-ARVVAADPSPDRRELALS----FGATA--LAEPEVLAERQGGLQ--NGRGVDV 190 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHH----cCCcE--ecCchhhHHHHHHHh--CCCCCCE
Confidence 46778888876 55666677776543 359999999988777654 34321 111 11111111111 1234676
Q ss_pred EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
++-....+ ..++...+.|+|+|++++
T Consensus 191 vid~~G~~--------------~~~~~~~~~l~~~G~iv~ 216 (280)
T TIGR03366 191 ALEFSGAT--------------AAVRACLESLDVGGTAVL 216 (280)
T ss_pred EEECCCCh--------------HHHHHHHHHhcCCCEEEE
Confidence 54332222 677788999999999863
No 322
>PLN02740 Alcohol dehydrogenase-like
Probab=90.40 E-value=2.5 Score=38.45 Aligned_cols=93 Identities=12% Similarity=0.157 Sum_probs=56.0
Q ss_pred CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEcc-----ccchHHhhccCCCC
Q 026219 124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFAN-----ASVSFKQLVSSYPG 197 (241)
Q Consensus 124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D-----~~~~~~~~~~~~~~ 197 (241)
.+.+||=+|+| .|..+..+++.... .+|+++|.+++.++.+++ .|.+. ++..+ ..+.+.... .+
T Consensus 198 ~g~~VlV~G~G~vG~~a~q~ak~~G~-~~Vi~~~~~~~r~~~a~~----~Ga~~--~i~~~~~~~~~~~~v~~~~---~~ 267 (381)
T PLN02740 198 AGSSVAIFGLGAVGLAVAEGARARGA-SKIIGVDINPEKFEKGKE----MGITD--FINPKDSDKPVHERIREMT---GG 267 (381)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-CcEEEEcCChHHHHHHHH----cCCcE--EEecccccchHHHHHHHHh---CC
Confidence 46788888886 56666777777543 369999999998888754 35422 22211 111121211 22
Q ss_pred cEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccC-CEEE
Q 026219 198 PLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPG-GKVY 240 (241)
Q Consensus 198 ~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpG-G~l~ 240 (241)
.+|.|+-....+ ..++.....+++| |+++
T Consensus 268 g~dvvid~~G~~--------------~~~~~a~~~~~~g~G~~v 297 (381)
T PLN02740 268 GVDYSFECAGNV--------------EVLREAFLSTHDGWGLTV 297 (381)
T ss_pred CCCEEEECCCCh--------------HHHHHHHHhhhcCCCEEE
Confidence 577654333322 6677778888886 8765
No 323
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=90.28 E-value=2.8 Score=37.59 Aligned_cols=92 Identities=20% Similarity=0.168 Sum_probs=54.8
Q ss_pred CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeC---CHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcE
Q 026219 124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEI---RQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPL 199 (241)
Q Consensus 124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDi---s~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~ 199 (241)
.+.+||=+|+| .|.++..+++.. + .+|++++. +++..+.++ +.|...+.....|..+ ... ...+
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~-G-~~vi~~~~~~~~~~~~~~~~----~~Ga~~v~~~~~~~~~----~~~--~~~~ 239 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLR-G-FEVYVLNRRDPPDPKADIVE----ELGATYVNSSKTPVAE----VKL--VGEF 239 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-C-CeEEEEecCCCCHHHHHHHH----HcCCEEecCCccchhh----hhh--cCCC
Confidence 46788888987 477778888875 3 57999987 566666654 3343211111111111 001 2346
Q ss_pred eEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 200 MLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 200 d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
|.|+-....+ ..+....+.|++||++++
T Consensus 240 d~vid~~g~~--------------~~~~~~~~~l~~~G~~v~ 267 (355)
T cd08230 240 DLIIEATGVP--------------PLAFEALPALAPNGVVIL 267 (355)
T ss_pred CEEEECcCCH--------------HHHHHHHHHccCCcEEEE
Confidence 7555333222 577888999999998863
No 324
>PLN02827 Alcohol dehydrogenase-like
Probab=90.22 E-value=2.5 Score=38.46 Aligned_cols=93 Identities=15% Similarity=0.182 Sum_probs=55.3
Q ss_pred CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEc-----cccchHHhhccCCCC
Q 026219 124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFA-----NASVSFKQLVSSYPG 197 (241)
Q Consensus 124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~-----D~~~~~~~~~~~~~~ 197 (241)
++.+||=.|+| .|..+..+++...- ..|+++|.+++..+.+++ .|.+. ++.. +..+.+.... .+
T Consensus 193 ~g~~VlV~G~G~vG~~~iqlak~~G~-~~vi~~~~~~~~~~~a~~----lGa~~--~i~~~~~~~~~~~~v~~~~---~~ 262 (378)
T PLN02827 193 KGSSVVIFGLGTVGLSVAQGAKLRGA-SQIIGVDINPEKAEKAKT----FGVTD--FINPNDLSEPIQQVIKRMT---GG 262 (378)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEECCCHHHHHHHHH----cCCcE--EEcccccchHHHHHHHHHh---CC
Confidence 46788888876 55666677776543 369999999988777643 35422 2211 1111121211 22
Q ss_pred cEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccC-CEEE
Q 026219 198 PLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPG-GKVY 240 (241)
Q Consensus 198 ~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpG-G~l~ 240 (241)
.+|.|+-.-..+ ..+....+.|++| |+++
T Consensus 263 g~d~vid~~G~~--------------~~~~~~l~~l~~g~G~iv 292 (378)
T PLN02827 263 GADYSFECVGDT--------------GIATTALQSCSDGWGLTV 292 (378)
T ss_pred CCCEEEECCCCh--------------HHHHHHHHhhccCCCEEE
Confidence 467654332222 5677788899998 9886
No 325
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=89.72 E-value=0.6 Score=42.92 Aligned_cols=41 Identities=29% Similarity=0.408 Sum_probs=35.4
Q ss_pred CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHH
Q 026219 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEF 167 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~ 167 (241)
-..++|+|.|.|.++..++-.+. ..|+|||-|....++|++
T Consensus 154 i~~vvD~GaG~G~LSr~lSl~y~--lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 154 IDQVVDVGAGQGHLSRFLSLGYG--LSVKAIEGSQRLVERAQR 194 (476)
T ss_pred CCeeEEcCCCchHHHHHHhhccC--ceEEEeccchHHHHHHHH
Confidence 46799999999999999988775 489999999888877765
No 326
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=89.60 E-value=2.4 Score=37.48 Aligned_cols=96 Identities=13% Similarity=0.093 Sum_probs=55.7
Q ss_pred CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccC-CCCcEeE
Q 026219 124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSS-YPGPLML 201 (241)
Q Consensus 124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~-~~~~~d~ 201 (241)
++.+||-.|+| .|..+..+++.... ..+++++.++...+.+++ .+.. .++...-.+..+.+... ....+|.
T Consensus 167 ~~~~VlI~g~g~vg~~~iqlak~~g~-~~v~~~~~~~~~~~~~~~----~g~~--~vi~~~~~~~~~~i~~~~~~~~~d~ 239 (347)
T cd05278 167 PGSTVAVIGAGPVGLCAVAGARLLGA-ARIIAVDSNPERLDLAKE----AGAT--DIINPKNGDIVEQILELTGGRGVDC 239 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHHHHH----hCCc--EEEcCCcchHHHHHHHHcCCCCCcE
Confidence 35677777876 47788888887653 378999988877766543 2321 22222111111111111 2245776
Q ss_pred EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
++ ..... ...+++..+.|+++|+++
T Consensus 240 vl-d~~g~-------------~~~~~~~~~~l~~~G~~v 264 (347)
T cd05278 240 VI-EAVGF-------------EETFEQAVKVVRPGGTIA 264 (347)
T ss_pred EE-EccCC-------------HHHHHHHHHHhhcCCEEE
Confidence 54 32211 157788889999999876
No 327
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=88.98 E-value=3.2 Score=36.74 Aligned_cols=95 Identities=13% Similarity=0.139 Sum_probs=55.0
Q ss_pred CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccc--cchHHhhccCCCCcEe
Q 026219 124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANA--SVSFKQLVSSYPGPLM 200 (241)
Q Consensus 124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~--~~~~~~~~~~~~~~~d 200 (241)
.+.+||=+|+| .|..+..+++...- ..|+++|.+++..+.+++ .|... ++...- .+.+.... ....+|
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~-~~vi~~~~~~~~~~~~~~----~ga~~--~i~~~~~~~~~~~~~~--~~~~~d 233 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGA-EDVIGVDPSPERLELAKA----LGADF--VINSGQDDVQEIRELT--SGAGAD 233 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHH----hCCCE--EEcCCcchHHHHHHHh--CCCCCC
Confidence 36677777876 45666677776543 239999999988777643 35421 221111 11111111 123577
Q ss_pred EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
.|+-....+ ..++...+.|+++|++++
T Consensus 234 ~vid~~g~~--------------~~~~~~~~~l~~~G~~v~ 260 (339)
T cd08239 234 VAIECSGNT--------------AARRLALEAVRPWGRLVL 260 (339)
T ss_pred EEEECCCCH--------------HHHHHHHHHhhcCCEEEE
Confidence 665333222 566777889999998863
No 328
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=88.94 E-value=4.8 Score=35.29 Aligned_cols=95 Identities=18% Similarity=0.116 Sum_probs=56.6
Q ss_pred CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219 124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV 202 (241)
Q Consensus 124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V 202 (241)
++.+||-+|+| .|..+..+++...- ..++.++.+++..+.+++ .+.. .++..+-.+...... .....+|.+
T Consensus 159 ~g~~vlI~g~g~vg~~~~~la~~~G~-~~v~~~~~~~~~~~~~~~----~g~~--~~~~~~~~~~~~~~~-~~~~~vd~v 230 (334)
T cd08234 159 PGDSVLVFGAGPIGLLLAQLLKLNGA-SRVTVAEPNEEKLELAKK----LGAT--ETVDPSREDPEAQKE-DNPYGFDVV 230 (334)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEECCCHHHHHHHHH----hCCe--EEecCCCCCHHHHHH-hcCCCCcEE
Confidence 45788888876 47777778887543 238999999988777643 3432 233222111111101 123457766
Q ss_pred EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
+-.... ...++...+.|+++|+++
T Consensus 231 ~~~~~~--------------~~~~~~~~~~l~~~G~~v 254 (334)
T cd08234 231 IEATGV--------------PKTLEQAIEYARRGGTVL 254 (334)
T ss_pred EECCCC--------------hHHHHHHHHHHhcCCEEE
Confidence 533221 267778889999999875
No 329
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=88.86 E-value=3.5 Score=36.68 Aligned_cols=94 Identities=17% Similarity=0.143 Sum_probs=56.4
Q ss_pred CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEc---cccchHHhhccCCCCcE
Q 026219 124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFA---NASVSFKQLVSSYPGPL 199 (241)
Q Consensus 124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~---D~~~~~~~~~~~~~~~~ 199 (241)
++.+||=.|+| .|..+..+++.... ..++++|.+++..+.+++ .|.. .++.. +..+.+.... ....+
T Consensus 166 ~g~~vlI~g~g~iG~~~~~lak~~G~-~~v~~~~~~~~~~~~~~~----~g~~--~~v~~~~~~~~~~i~~~~--~~~~~ 236 (351)
T cd08285 166 LGDTVAVFGIGPVGLMAVAGARLRGA-GRIIAVGSRPNRVELAKE----YGAT--DIVDYKNGDVVEQILKLT--GGKGV 236 (351)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHH----cCCc--eEecCCCCCHHHHHHHHh--CCCCC
Confidence 45677777876 56777778877644 469999999987777653 3442 22221 2111111111 12347
Q ss_pred eEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 200 MLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 200 d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
|.++-.... ...+..+.+.|+++|+++
T Consensus 237 d~vld~~g~--------------~~~~~~~~~~l~~~G~~v 263 (351)
T cd08285 237 DAVIIAGGG--------------QDTFEQALKVLKPGGTIS 263 (351)
T ss_pred cEEEECCCC--------------HHHHHHHHHHhhcCCEEE
Confidence 765433221 267788899999999875
No 330
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=88.81 E-value=3.4 Score=36.96 Aligned_cols=42 Identities=17% Similarity=0.310 Sum_probs=33.2
Q ss_pred CCCcEEEEcCCc-cHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHH
Q 026219 124 TLPLMVDIGSGS-GRFLIWLARRNPDSGNYLGLEIRQKLVKRAEF 167 (241)
Q Consensus 124 ~~~~VLDIGCGt-G~~~~~la~~~p~~~~v~giDis~~~v~~a~~ 167 (241)
++.+||=+|+|. |..+..+++... .+++++|.+++.++.+++
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a~~~G--~~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTAKAMG--AAVVAIDIDPEKLEMMKG 208 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHH
Confidence 467899999974 777788888763 479999999998887744
No 331
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=88.77 E-value=0.97 Score=35.37 Aligned_cols=42 Identities=14% Similarity=0.245 Sum_probs=27.9
Q ss_pred EEcCCcc--HHHHHHH--HHCCCCcEEEEEeCCHHHHHHHHHH--HHHh
Q 026219 130 DIGSGSG--RFLIWLA--RRNPDSGNYLGLEIRQKLVKRAEFW--VQEL 172 (241)
Q Consensus 130 DIGCGtG--~~~~~la--~~~p~~~~v~giDis~~~v~~a~~~--~~~~ 172 (241)
|||+..| .....+. ...+. ..|+++|.+|..++..+++ +.-+
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~-~~v~~~Ep~p~~~~~l~~~~~~~l~ 48 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPG-GRVHAFEPNPSNFEKLKRNLNLALN 48 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS---SEEEEE---HHHHHHHHHH--HHHT
T ss_pred CcccCCChhHHHHHHHHHHcCCC-CEEEEEECCHHHHHHHhHHHHHHhc
Confidence 8999999 6666554 34566 7999999999999999888 5444
No 332
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=88.73 E-value=5.3 Score=35.54 Aligned_cols=96 Identities=13% Similarity=0.076 Sum_probs=55.8
Q ss_pred CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEcccc--chHHhhccCCCCcEe
Q 026219 124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANAS--VSFKQLVSSYPGPLM 200 (241)
Q Consensus 124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~--~~~~~~~~~~~~~~d 200 (241)
.+.+||=.|+| .|..+..+++...- ..|+++|.+++..+.+++ .|.. .++..+-. +.+.... ....+|
T Consensus 160 ~g~~vlV~G~g~vG~~~~~~a~~~G~-~~v~~~~~~~~~~~~~~~----~Ga~--~~i~~~~~~~~~~~~~~--~~~~~d 230 (347)
T PRK10309 160 EGKNVIIIGAGTIGLLAIQCAVALGA-KSVTAIDINSEKLALAKS----LGAM--QTFNSREMSAPQIQSVL--RELRFD 230 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEECCCHHHHHHHHH----cCCc--eEecCcccCHHHHHHHh--cCCCCC
Confidence 35677777876 56666777776643 348999999988777643 3432 22211111 1111111 123466
Q ss_pred EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
.+++..... ...++...+.|++||++++
T Consensus 231 ~~v~d~~G~-------------~~~~~~~~~~l~~~G~iv~ 258 (347)
T PRK10309 231 QLILETAGV-------------PQTVELAIEIAGPRAQLAL 258 (347)
T ss_pred eEEEECCCC-------------HHHHHHHHHHhhcCCEEEE
Confidence 344443321 2677888999999999864
No 333
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=88.69 E-value=5.1 Score=35.65 Aligned_cols=87 Identities=18% Similarity=0.095 Sum_probs=53.8
Q ss_pred CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219 124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV 202 (241)
Q Consensus 124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V 202 (241)
.+.+||=.|+| .|..+..+++.. + .++++++.+++..+.+++ .|.+. ++ |..+ . ....+|.+
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~-G-~~vi~~~~~~~~~~~a~~----~Ga~~--vi--~~~~-----~--~~~~~d~~ 227 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQ-G-ATVHVMTRGAAARRLALA----LGAAS--AG--GAYD-----T--PPEPLDAA 227 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHC-C-CeEEEEeCChHHHHHHHH----hCCce--ec--cccc-----c--CcccceEE
Confidence 46788888876 555666777765 4 579999999988777654 45432 11 1111 0 01235644
Q ss_pred EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
+..-..+ ..++...+.|++||++++
T Consensus 228 i~~~~~~--------------~~~~~~~~~l~~~G~~v~ 252 (329)
T TIGR02822 228 ILFAPAG--------------GLVPPALEALDRGGVLAV 252 (329)
T ss_pred EECCCcH--------------HHHHHHHHhhCCCcEEEE
Confidence 3322211 567788899999999863
No 334
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=88.57 E-value=3.7 Score=36.21 Aligned_cols=95 Identities=14% Similarity=0.184 Sum_probs=57.3
Q ss_pred CCCcEEEEcCCc-cHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCE-EEEEccccchHHhhccCCCCcEeE
Q 026219 124 TLPLMVDIGSGS-GRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNI-HFLFANASVSFKQLVSSYPGPLML 201 (241)
Q Consensus 124 ~~~~VLDIGCGt-G~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni-~~~~~D~~~~~~~~~~~~~~~~d~ 201 (241)
++.+||-.|+|. |..+..+++.. + .+++++..+++..+.+++ .+...+ .....+..+.+.... .+..+|.
T Consensus 159 ~g~~vLI~g~g~vG~~a~~lA~~~-g-~~v~~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~~--~~~~vd~ 230 (337)
T cd08261 159 AGDTVLVVGAGPIGLGVIQVAKAR-G-ARVIVVDIDDERLEFARE----LGADDTINVGDEDVAARLRELT--DGEGADV 230 (337)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-C-CeEEEECCCHHHHHHHHH----hCCCEEecCcccCHHHHHHHHh--CCCCCCE
Confidence 467888888874 77888888875 4 589999889888776643 232221 111112111122221 1234776
Q ss_pred EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
++-.... ...+..+.+.|+++|+++
T Consensus 231 vld~~g~--------------~~~~~~~~~~l~~~G~~i 255 (337)
T cd08261 231 VIDATGN--------------PASMEEAVELVAHGGRVV 255 (337)
T ss_pred EEECCCC--------------HHHHHHHHHHHhcCCEEE
Confidence 6543322 266788899999999875
No 335
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=88.46 E-value=4.5 Score=36.57 Aligned_cols=95 Identities=13% Similarity=0.092 Sum_probs=55.0
Q ss_pred CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCC-EEEEE--ccccchHHhhccCCCCcE
Q 026219 124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IHFLF--ANASVSFKQLVSSYPGPL 199 (241)
Q Consensus 124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~n-i~~~~--~D~~~~~~~~~~~~~~~~ 199 (241)
.+.+||=+|+| .|..+..+++.... .+|+++|.+++..+.+++ .|... +.... .+..+.+.... ++.+
T Consensus 185 ~g~~VlV~G~G~iG~~a~q~Ak~~G~-~~Vi~~~~~~~~~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~~---~~g~ 256 (368)
T TIGR02818 185 EGDTVAVFGLGGIGLSVIQGARMAKA-SRIIAIDINPAKFELAKK----LGATDCVNPNDYDKPIQEVIVEIT---DGGV 256 (368)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHH----hCCCeEEcccccchhHHHHHHHHh---CCCC
Confidence 46778888886 46677778887543 379999999998887754 35422 11110 11111111111 2246
Q ss_pred eEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccC-CEEE
Q 026219 200 MLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPG-GKVY 240 (241)
Q Consensus 200 d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpG-G~l~ 240 (241)
|.++-....+ ..+....+.|++| |+++
T Consensus 257 d~vid~~G~~--------------~~~~~~~~~~~~~~G~~v 284 (368)
T TIGR02818 257 DYSFECIGNV--------------NVMRAALECCHKGWGESI 284 (368)
T ss_pred CEEEECCCCH--------------HHHHHHHHHhhcCCCeEE
Confidence 7554332222 5677778888886 8875
No 336
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=88.08 E-value=5.6 Score=36.21 Aligned_cols=95 Identities=15% Similarity=0.163 Sum_probs=61.1
Q ss_pred CCCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEc----cccchHHhhccCCCC
Q 026219 123 PTLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFA----NASVSFKQLVSSYPG 197 (241)
Q Consensus 123 ~~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~----D~~~~~~~~~~~~~~ 197 (241)
..+.+|.=+||| .|..++.-|+.... .++++||++++-++.|++ .|.. +++.. |+.+.+..+ -++
T Consensus 184 ~~G~tvaV~GlGgVGlaaI~gA~~agA-~~IiAvD~~~~Kl~~A~~----fGAT--~~vn~~~~~~vv~~i~~~---T~g 253 (366)
T COG1062 184 EPGDTVAVFGLGGVGLAAIQGAKAAGA-GRIIAVDINPEKLELAKK----FGAT--HFVNPKEVDDVVEAIVEL---TDG 253 (366)
T ss_pred CCCCeEEEEeccHhHHHHHHHHHHcCC-ceEEEEeCCHHHHHHHHh----cCCc--eeecchhhhhHHHHHHHh---cCC
Confidence 357889999998 67777777777666 799999999999998865 3432 33332 343333222 244
Q ss_pred cEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 198 PLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 198 ~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
-.|.++-.-... ..++.....++++|+.++
T Consensus 254 G~d~~~e~~G~~--------------~~~~~al~~~~~~G~~v~ 283 (366)
T COG1062 254 GADYAFECVGNV--------------EVMRQALEATHRGGTSVI 283 (366)
T ss_pred CCCEEEEccCCH--------------HHHHHHHHHHhcCCeEEE
Confidence 556553332222 566667777777887654
No 337
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=87.77 E-value=5.8 Score=34.97 Aligned_cols=94 Identities=15% Similarity=0.191 Sum_probs=56.3
Q ss_pred CCCcEEEEcCCc-cHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219 124 TLPLMVDIGSGS-GRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV 202 (241)
Q Consensus 124 ~~~~VLDIGCGt-G~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V 202 (241)
++.+||-.|+|. |..+..+++...- ..+++++.++...+.+++ .+.+ .++..+-.. +..... ....+|.+
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~-~~v~~~~~s~~~~~~~~~----~g~~--~vi~~~~~~-~~~~~~-~~~~vd~v 235 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGA-AEIVATDLADAPLAVARA----MGAD--ETVNLARDP-LAAYAA-DKGDFDVV 235 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEECCCHHHHHHHHH----cCCC--EEEcCCchh-hhhhhc-cCCCccEE
Confidence 467788888875 7788888887532 279999999988776543 2432 222211111 111111 12347766
Q ss_pred EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
+-.... ...++.+.+.|+++|+++
T Consensus 236 ld~~g~--------------~~~~~~~~~~L~~~G~~v 259 (339)
T cd08232 236 FEASGA--------------PAALASALRVVRPGGTVV 259 (339)
T ss_pred EECCCC--------------HHHHHHHHHHHhcCCEEE
Confidence 543221 156778899999999886
No 338
>PTZ00357 methyltransferase; Provisional
Probab=87.35 E-value=3.9 Score=40.70 Aligned_cols=103 Identities=11% Similarity=0.033 Sum_probs=63.5
Q ss_pred CcEEEEcCCccHHHHHHHH---HCCCCcEEEEEeCCHHHHHHHHHHHHH-hCCCC--------EEEEEccccchHHhh--
Q 026219 126 PLMVDIGSGSGRFLIWLAR---RNPDSGNYLGLEIRQKLVKRAEFWVQE-LALSN--------IHFLFANASVSFKQL-- 191 (241)
Q Consensus 126 ~~VLDIGCGtG~~~~~la~---~~p~~~~v~giDis~~~v~~a~~~~~~-~~l~n--------i~~~~~D~~~~~~~~-- 191 (241)
.+|+=+|+|-|-+.-...+ ...-..+|++||.++..+.....+.++ ..+.+ ++++..|..++-...
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 3689999999977655433 222226899999997755555444322 23333 899999998742110
Q ss_pred --c--cCCCCcEeEEEE----eCCCCchhhhhhhcccchHHHHHHHHhcccc----CCE
Q 026219 192 --V--SSYPGPLMLVSI----LCPDPHFKKKHHKRRVVQKPLVDSIIDYLMP----GGK 238 (241)
Q Consensus 192 --~--~~~~~~~d~V~~----~~~~~~~~~~~~~~r~~~~~ll~~l~r~Lkp----GG~ 238 (241)
. +..-+.+|+|+. .|.|- .+..+.|.-+.+.||+ +|+
T Consensus 782 ~s~~~P~~~gKaDIVVSELLGSFGDN----------ELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVSELLGSLGDN----------ELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehHhhhcccccc----------cCCHHHHHHHHHhhhhhcccccc
Confidence 0 001136787754 34442 2345888888888887 775
No 339
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=87.19 E-value=1.3 Score=38.74 Aligned_cols=60 Identities=13% Similarity=0.238 Sum_probs=42.1
Q ss_pred CCcEEEEcCCccHHHHHHHHHC-----CCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccc
Q 026219 125 LPLMVDIGSGSGRFLIWLARRN-----PDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASV 186 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~-----p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~ 186 (241)
...++|+|||.|.++..+++.. +. ..++.||...... .+..+++.... ..++-+..|+.+
T Consensus 19 ~~~~vEfGaGrg~LS~~v~~~~~~~~~~~-~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riDI~d 84 (259)
T PF05206_consen 19 DSCFVEFGAGRGELSRWVAQALQEDKPSN-SRFVLIDRASNRH-KADNKIRKDESEPKFERLRIDIKD 84 (259)
T ss_pred CCEEEEECCCchHHHHHHHHHhhhcccCC-ccEEEEecCcccc-cchhhhhccCCCCceEEEEEEeec
Confidence 5689999999999999999887 34 6899999976443 33333443321 246666777765
No 340
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=87.03 E-value=1.9 Score=39.86 Aligned_cols=71 Identities=21% Similarity=0.267 Sum_probs=49.5
Q ss_pred hhHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHH-------hCC--CCEEEEEcccc
Q 026219 115 DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQE-------LAL--SNIHFLFANAS 185 (241)
Q Consensus 115 ~~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~-------~~l--~ni~~~~~D~~ 185 (241)
...+...-.++....|+|.|.|......+..... ..-+|+|+....-+.|..+.+. .|- ..++.+++++.
T Consensus 183 si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~-k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~ 261 (419)
T KOG3924|consen 183 SIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGC-KKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFL 261 (419)
T ss_pred HHHHHhccCCCCcccCCCcccchhhHHHHHhhcc-ccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccC
Confidence 3344444445789999999999999888876544 5688999988776666554332 232 23788888887
Q ss_pred c
Q 026219 186 V 186 (241)
Q Consensus 186 ~ 186 (241)
.
T Consensus 262 ~ 262 (419)
T KOG3924|consen 262 D 262 (419)
T ss_pred C
Confidence 5
No 341
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=87.01 E-value=1.1 Score=34.71 Aligned_cols=56 Identities=18% Similarity=0.243 Sum_probs=36.2
Q ss_pred CEEEEEccccchHHhhccCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 176 NIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 176 ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
++++..+|+.+.++.+ +..+|.+++.-..|. + ...+-...+++.++++++|||++.
T Consensus 32 ~L~L~~gDa~~~l~~l----~~~~Da~ylDgFsP~-~----nPelWs~e~~~~l~~~~~~~~~l~ 87 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQL----DARFDAWYLDGFSPA-K----NPELWSEELFKKLARLSKPGGTLA 87 (124)
T ss_dssp EEEEEES-HHHHHHHB-----T-EEEEEE-SS-TT-T----SGGGSSHHHHHHHHHHEEEEEEEE
T ss_pred EEEEEEcHHHHHHHhC----cccCCEEEecCCCCc-C----CcccCCHHHHHHHHHHhCCCcEEE
Confidence 4677889998766554 478998887632220 1 112445699999999999999874
No 342
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=86.67 E-value=7.8 Score=33.92 Aligned_cols=91 Identities=13% Similarity=0.120 Sum_probs=55.8
Q ss_pred CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219 124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV 202 (241)
Q Consensus 124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V 202 (241)
.+..||-+|+| .|..+..+++... .++++++.+++..+.+++ .+.. .++..+-...... ....+|.+
T Consensus 162 ~~~~vlI~g~g~iG~~~~~~a~~~G--~~v~~~~~~~~~~~~~~~----~g~~--~~~~~~~~~~~~~----~~~~~d~v 229 (330)
T cd08245 162 PGERVAVLGIGGLGHLAVQYARAMG--FETVAITRSPDKRELARK----LGAD--EVVDSGAELDEQA----AAGGADVI 229 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----hCCc--EEeccCCcchHHh----ccCCCCEE
Confidence 45678888987 7888778888753 479999999988777633 2322 1121111111111 12347766
Q ss_pred EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
+-..... ..++.+.+.|+++|+++
T Consensus 230 i~~~~~~--------------~~~~~~~~~l~~~G~~i 253 (330)
T cd08245 230 LVTVVSG--------------AAAEAALGGLRRGGRIV 253 (330)
T ss_pred EECCCcH--------------HHHHHHHHhcccCCEEE
Confidence 5432322 56777889999999876
No 343
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=86.47 E-value=6.9 Score=35.24 Aligned_cols=95 Identities=14% Similarity=0.142 Sum_probs=53.9
Q ss_pred CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCE-EEEEc--cccchHHhhccCCCCcE
Q 026219 124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNI-HFLFA--NASVSFKQLVSSYPGPL 199 (241)
Q Consensus 124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni-~~~~~--D~~~~~~~~~~~~~~~~ 199 (241)
.+.+||=+|+| .|..+..+++...- .+|+++|.+++..+.+++ .|...+ ..... +..+.+.... ...+
T Consensus 184 ~g~~vlV~G~g~vG~~~~~~a~~~G~-~~Vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~~~~~---~~g~ 255 (365)
T cd08277 184 PGSTVAVFGLGAVGLSAIMGAKIAGA-SRIIGVDINEDKFEKAKE----FGATDFINPKDSDKPVSEVIREMT---GGGV 255 (365)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHH----cCCCcEeccccccchHHHHHHHHh---CCCC
Confidence 46777777875 55666677777543 379999999988877743 344321 11110 1111111111 2346
Q ss_pred eEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccC-CEEE
Q 026219 200 MLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPG-GKVY 240 (241)
Q Consensus 200 d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpG-G~l~ 240 (241)
|.|+-.-..+ ..++...+.|+++ |+++
T Consensus 256 d~vid~~g~~--------------~~~~~~~~~l~~~~G~~v 283 (365)
T cd08277 256 DYSFECTGNA--------------DLMNEALESTKLGWGVSV 283 (365)
T ss_pred CEEEECCCCh--------------HHHHHHHHhcccCCCEEE
Confidence 7655322212 6677788889885 8875
No 344
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=86.32 E-value=5.8 Score=33.79 Aligned_cols=90 Identities=14% Similarity=0.096 Sum_probs=53.2
Q ss_pred CCCcEEEEcCCc-cHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219 124 TLPLMVDIGSGS-GRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV 202 (241)
Q Consensus 124 ~~~~VLDIGCGt-G~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V 202 (241)
++.+||=.|+|. |..+..+++.... ..+++++.+++..+.+++ .|..+ .++.. .+ ... ....+|.+
T Consensus 97 ~g~~vlI~g~g~vg~~~i~~a~~~g~-~~vi~~~~~~~~~~~~~~----~g~~~-~~~~~--~~---~~~--~~~~~d~v 163 (277)
T cd08255 97 LGERVAVVGLGLVGLLAAQLAKAAGA-REVVGVDPDAARRELAEA----LGPAD-PVAAD--TA---DEI--GGRGADVV 163 (277)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-CcEEEECCCHHHHHHHHH----cCCCc-ccccc--ch---hhh--cCCCCCEE
Confidence 456777778875 7777888887643 239999999988776654 23111 01100 00 001 12346765
Q ss_pred EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
+-.... ...++...+.|+++|+++
T Consensus 164 l~~~~~--------------~~~~~~~~~~l~~~g~~~ 187 (277)
T cd08255 164 IEASGS--------------PSALETALRLLRDRGRVV 187 (277)
T ss_pred EEccCC--------------hHHHHHHHHHhcCCcEEE
Confidence 432221 156777888899999875
No 345
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=86.06 E-value=11 Score=33.27 Aligned_cols=94 Identities=12% Similarity=0.054 Sum_probs=55.9
Q ss_pred CcEEEEcC--CccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219 126 PLMVDIGS--GSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS 203 (241)
Q Consensus 126 ~~VLDIGC--GtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~ 203 (241)
.+||=.|. |.|..+..+++...- .+|++++.+++..+.+++. .|.+. ++..+-.+..+.+....+..+|.|+
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~-~~Vi~~~~s~~~~~~~~~~---lGa~~--vi~~~~~~~~~~i~~~~~~gvd~vi 229 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGC-SRVVGICGSDEKCQLLKSE---LGFDA--AINYKTDNVAERLRELCPEGVDVYF 229 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHh---cCCcE--EEECCCCCHHHHHHHHCCCCceEEE
Confidence 67877775 588888889887632 2799999999877776542 35432 2222111111111111124578665
Q ss_pred EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
-.... ..++...+.|+++|+++
T Consensus 230 d~~g~---------------~~~~~~~~~l~~~G~iv 251 (345)
T cd08293 230 DNVGG---------------EISDTVISQMNENSHII 251 (345)
T ss_pred ECCCc---------------HHHHHHHHHhccCCEEE
Confidence 32221 33577888999999886
No 346
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=85.92 E-value=1.1 Score=40.24 Aligned_cols=56 Identities=25% Similarity=0.274 Sum_probs=41.8
Q ss_pred EEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccc
Q 026219 128 MVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANA 184 (241)
Q Consensus 128 VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~ 184 (241)
=+|||.|+-.+--.+..+.-+ ...+++|++...+..|.+++.+++++ .+.+++...
T Consensus 106 GiDIgtgasci~~llg~rq~n-~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~ 162 (419)
T KOG2912|consen 106 GIDIGTGASCIYPLLGARQNN-WYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEP 162 (419)
T ss_pred eeeccCchhhhHHhhhchhcc-ceeeeeeccccccchhhccccccccccceeeEEecc
Confidence 378888876555444443334 78999999999999999999998874 566666544
No 347
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=85.86 E-value=4.8 Score=39.35 Aligned_cols=72 Identities=18% Similarity=0.160 Sum_probs=43.5
Q ss_pred cEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEE
Q 026219 127 LMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSI 204 (241)
Q Consensus 127 ~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~ 204 (241)
.|+= ||.|.++..+++.. .+ ..++.+|.+++.++.+++ . ...++.+|+.+. +.+..-.-...+.+++
T Consensus 402 ~vII--~G~Gr~G~~va~~L~~~g-~~vvvID~d~~~v~~~~~----~---g~~v~~GDat~~-~~L~~agi~~A~~vv~ 470 (601)
T PRK03659 402 QVII--VGFGRFGQVIGRLLMANK-MRITVLERDISAVNLMRK----Y---GYKVYYGDATQL-ELLRAAGAEKAEAIVI 470 (601)
T ss_pred CEEE--ecCchHHHHHHHHHHhCC-CCEEEEECCHHHHHHHHh----C---CCeEEEeeCCCH-HHHHhcCCccCCEEEE
Confidence 4544 55566666555532 23 479999999999888754 2 457899999862 1111101234566776
Q ss_pred eCCCC
Q 026219 205 LCPDP 209 (241)
Q Consensus 205 ~~~~~ 209 (241)
...++
T Consensus 471 ~~~d~ 475 (601)
T PRK03659 471 TCNEP 475 (601)
T ss_pred EeCCH
Confidence 66654
No 348
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=85.78 E-value=7.6 Score=34.92 Aligned_cols=93 Identities=13% Similarity=0.135 Sum_probs=54.0
Q ss_pred CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEcc-----ccchHHhhccCCCC
Q 026219 124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFAN-----ASVSFKQLVSSYPG 197 (241)
Q Consensus 124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D-----~~~~~~~~~~~~~~ 197 (241)
.+.+||=.|+| .|..+..+++.... .+|+++|.+++..+.+++ .|.. .++..+ ..+.+.... ++
T Consensus 187 ~g~~VlV~G~g~vG~~a~q~ak~~G~-~~vi~~~~~~~~~~~~~~----~Ga~--~~i~~~~~~~~~~~~v~~~~---~~ 256 (369)
T cd08301 187 KGSTVAIFGLGAVGLAVAEGARIRGA-SRIIGVDLNPSKFEQAKK----FGVT--EFVNPKDHDKPVQEVIAEMT---GG 256 (369)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHH----cCCc--eEEcccccchhHHHHHHHHh---CC
Confidence 46777778876 55666777777543 379999999988887643 3542 222111 111111111 23
Q ss_pred cEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccC-CEEE
Q 026219 198 PLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPG-GKVY 240 (241)
Q Consensus 198 ~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpG-G~l~ 240 (241)
.+|.++-....+ ..+....+.+++| |+++
T Consensus 257 ~~d~vid~~G~~--------------~~~~~~~~~~~~~~g~~v 286 (369)
T cd08301 257 GVDYSFECTGNI--------------DAMISAFECVHDGWGVTV 286 (369)
T ss_pred CCCEEEECCCCh--------------HHHHHHHHHhhcCCCEEE
Confidence 467554322222 5667778888996 8875
No 349
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=85.53 E-value=9.1 Score=34.49 Aligned_cols=93 Identities=12% Similarity=0.132 Sum_probs=54.5
Q ss_pred CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEc-----cccchHHhhccCCCC
Q 026219 124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFA-----NASVSFKQLVSSYPG 197 (241)
Q Consensus 124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~-----D~~~~~~~~~~~~~~ 197 (241)
.+.+||=+|+| .|..+..+++...- ..|+++|.+++..+.+++ .|... ++.. |..+.+.... ++
T Consensus 186 ~g~~VlV~G~G~vG~~a~~~ak~~G~-~~vi~~~~~~~~~~~~~~----lGa~~--~i~~~~~~~~~~~~v~~~~---~~ 255 (368)
T cd08300 186 PGSTVAVFGLGAVGLAVIQGAKAAGA-SRIIGIDINPDKFELAKK----FGATD--CVNPKDHDKPIQQVLVEMT---DG 255 (368)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHH----cCCCE--EEcccccchHHHHHHHHHh---CC
Confidence 46777777875 55666677776543 379999999998887643 35432 2211 1211111211 23
Q ss_pred cEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccC-CEEE
Q 026219 198 PLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPG-GKVY 240 (241)
Q Consensus 198 ~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpG-G~l~ 240 (241)
.+|.|+-....+ ..++...+.|+++ |+++
T Consensus 256 g~d~vid~~g~~--------------~~~~~a~~~l~~~~G~~v 285 (368)
T cd08300 256 GVDYTFECIGNV--------------KVMRAALEACHKGWGTSV 285 (368)
T ss_pred CCcEEEECCCCh--------------HHHHHHHHhhccCCCeEE
Confidence 567654322212 5677788889887 8775
No 350
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=85.43 E-value=2 Score=38.39 Aligned_cols=68 Identities=15% Similarity=0.086 Sum_probs=46.4
Q ss_pred EEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEEeCC
Q 026219 128 MVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSILCP 207 (241)
Q Consensus 128 VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~~~ 207 (241)
|+|+-||.|.+..-+.+..- -.+.++|+++.+++.-+.|. ++ .++.+|+.+....-+ ..+|+++..+|
T Consensus 1 vidLF~G~GG~~~Gl~~aG~--~~~~a~e~~~~a~~ty~~N~-----~~-~~~~~Di~~~~~~~~----~~~dvl~gg~P 68 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGF--KCVFASEIDKYAQKTYEANF-----GN-KVPFGDITKISPSDI----PDFDILLGGFP 68 (315)
T ss_pred CEEEecCccHHHHHHHHcCC--eEEEEEeCCHHHHHHHHHhC-----CC-CCCccChhhhhhhhC----CCcCEEEecCC
Confidence 68999999999999877632 24678999999888876653 23 456688876321111 24687766555
No 351
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=85.31 E-value=3.2 Score=37.33 Aligned_cols=75 Identities=9% Similarity=-0.004 Sum_probs=51.4
Q ss_pred CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEE
Q 026219 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSI 204 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~ 204 (241)
..+++|+-||.|.+..-+.+..-+ -+.++|+++.+++.-+.|. +...++..|+.+.....+. +..+|+++-
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~--~~~a~Eid~~a~~ty~~n~-----~~~~~~~~di~~~~~~~~~--~~~~Dvlig 73 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFE--IVFANEIDPPAVATYKANF-----PHGDIILGDIKELDGEALR--KSDVDVLIG 73 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCe--EEEEEecCHHHHHHHHHhC-----CCCceeechHhhcChhhcc--ccCCCEEEe
Confidence 467999999999999888776533 5889999999888765543 2256677777653222221 116787776
Q ss_pred eCCC
Q 026219 205 LCPD 208 (241)
Q Consensus 205 ~~~~ 208 (241)
.+|-
T Consensus 74 GpPC 77 (328)
T COG0270 74 GPPC 77 (328)
T ss_pred CCCC
Confidence 6554
No 352
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=85.22 E-value=3.3 Score=38.39 Aligned_cols=105 Identities=20% Similarity=0.114 Sum_probs=56.5
Q ss_pred CcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhc------cCCC-
Q 026219 126 PLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLV------SSYP- 196 (241)
Q Consensus 126 ~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~------~~~~- 196 (241)
.+|-=||= |..++.+|-.+ .+ ..|+|+||++..++..++ |. ..+..-+..+.+.... ..-+
T Consensus 10 ~~I~ViGL--GYVGLPlA~~fA~~G-~~ViG~DIn~~~Vd~ln~-----G~--~~i~e~~~~~~v~~~v~~g~lraTtd~ 79 (436)
T COG0677 10 ATIGVIGL--GYVGLPLAAAFASAG-FKVIGVDINQKKVDKLNR-----GE--SYIEEPDLDEVVKEAVESGKLRATTDP 79 (436)
T ss_pred eEEEEEcc--ccccHHHHHHHHHcC-CceEeEeCCHHHHHHHhC-----Cc--ceeecCcHHHHHHHHHhcCCceEecCh
Confidence 44555554 55555555443 23 579999999999887632 32 2333333221111000 0001
Q ss_pred ---CcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 197 ---GPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 197 ---~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
..-|.+++.-|.|.-+ .+.-..-......+.+.+.|++|-.+++
T Consensus 80 ~~l~~~dv~iI~VPTPl~~-~~~pDls~v~~aa~sIa~~L~kG~LVIl 126 (436)
T COG0677 80 EELKECDVFIICVPTPLKK-YREPDLSYVESAARSIAPVLKKGDLVIL 126 (436)
T ss_pred hhcccCCEEEEEecCCcCC-CCCCChHHHHHHHHHHHHhcCCCCEEEE
Confidence 1346667776666322 1111122446888899999999877764
No 353
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=85.20 E-value=11 Score=33.97 Aligned_cols=96 Identities=15% Similarity=0.161 Sum_probs=55.4
Q ss_pred CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219 124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV 202 (241)
Q Consensus 124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V 202 (241)
.+.+||=.|+| .|..+..+++...- ..++++|.++...+.+++ .+.. .++..+-.+..+.+.......+|.|
T Consensus 186 ~g~~vlI~g~g~vG~~~~~la~~~G~-~~v~~~~~~~~k~~~~~~----~g~~--~~i~~~~~~~~~~v~~~~~~~~d~v 258 (365)
T cd08278 186 PGSSIAVFGAGAVGLAAVMAAKIAGC-TTIIAVDIVDSRLELAKE----LGAT--HVINPKEEDLVAAIREITGGGVDYA 258 (365)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHH----cCCc--EEecCCCcCHHHHHHHHhCCCCcEE
Confidence 35677777876 36777778887644 369999999987776643 3432 2222111111111111012346765
Q ss_pred EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
+-....+ ..+..+.+.|+++|+++
T Consensus 259 ld~~g~~--------------~~~~~~~~~l~~~G~~v 282 (365)
T cd08278 259 LDTTGVP--------------AVIEQAVDALAPRGTLA 282 (365)
T ss_pred EECCCCc--------------HHHHHHHHHhccCCEEE
Confidence 4332222 56778889999999876
No 354
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=84.51 E-value=7.4 Score=35.77 Aligned_cols=104 Identities=10% Similarity=0.020 Sum_probs=55.9
Q ss_pred CCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEc---cccchHHhhccCCCCcEe
Q 026219 125 LPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFA---NASVSFKQLVSSYPGPLM 200 (241)
Q Consensus 125 ~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~---D~~~~~~~~~~~~~~~~d 200 (241)
+.+||=.|+| .|..+..+++...- ..++.+|.+++..+.+++ .|.. .+... +..+.+..... ...+|
T Consensus 186 g~~VlV~G~G~iG~~aiqlAk~~Ga-~~vi~~d~~~~r~~~a~~----~Ga~--~v~~~~~~~~~~~v~~~~~--~~g~D 256 (393)
T TIGR02819 186 GSTVYIAGAGPVGLAAAASAQLLGA-AVVIVGDLNPARLAQARS----FGCE--TVDLSKDATLPEQIEQILG--EPEVD 256 (393)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCHHHHHHHHH----cCCe--EEecCCcccHHHHHHHHcC--CCCCc
Confidence 4455547776 56666777777644 357778999888887754 3542 22211 22121222211 23467
Q ss_pred EEEEeCCCC---chhhhhhhcccchH-HHHHHHHhccccCCEEEc
Q 026219 201 LVSILCPDP---HFKKKHHKRRVVQK-PLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 201 ~V~~~~~~~---~~~~~~~~~r~~~~-~ll~~l~r~LkpGG~l~~ 241 (241)
.++-.-..+ ++.+. ..... ..++...+++++||++++
T Consensus 257 vvid~~G~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~G~i~~ 297 (393)
T TIGR02819 257 CAVDCVGFEARGHGHDG----KKEAPATVLNSLMEVTRVGGAIGI 297 (393)
T ss_pred EEEECCCCccccccccc----cccchHHHHHHHHHHhhCCCEEEE
Confidence 654332222 11100 01111 478889999999999874
No 355
>PRK07806 short chain dehydrogenase; Provisional
Probab=84.31 E-value=13 Score=30.95 Aligned_cols=114 Identities=12% Similarity=0.004 Sum_probs=57.2
Q ss_pred CCcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCH-HHHHHHHHHHHHhCCCCEEEEEccccchH--HhhccC---CC
Q 026219 125 LPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQ-KLVKRAEFWVQELALSNIHFLFANASVSF--KQLVSS---YP 196 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~-~~v~~a~~~~~~~~l~ni~~~~~D~~~~~--~~~~~~---~~ 196 (241)
+.++|=.|+ +|.++..+++.+ .+ .+|++++.+. ...+.....++..+ .++.++.+|+.+.- ...+.. .-
T Consensus 6 ~k~vlItGa-sggiG~~l~~~l~~~G-~~V~~~~r~~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (248)
T PRK07806 6 GKTALVTGS-SRGIGADTAKILAGAG-AHVVVNYRQKAPRANKVVAEIEAAG-GRASAVGADLTDEESVAALMDTAREEF 82 (248)
T ss_pred CcEEEEECC-CCcHHHHHHHHHHHCC-CEEEEEeCCchHhHHHHHHHHHhcC-CceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 467888885 444555555443 24 5798888764 33343333343333 36788999987631 111110 01
Q ss_pred CcEeEEEEeCCCCch-----hhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 197 GPLMLVSILCPDPHF-----KKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 197 ~~~d~V~~~~~~~~~-----~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
+.+|.++.+...... .........-...+++.+.+.++.+|.+++
T Consensus 83 ~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~ 132 (248)
T PRK07806 83 GGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVF 132 (248)
T ss_pred CCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEE
Confidence 357766654321100 000000011123567777777766676653
No 356
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=84.24 E-value=6 Score=37.74 Aligned_cols=112 Identities=15% Similarity=0.105 Sum_probs=66.6
Q ss_pred CCcEEEEcCCccHHHHHHHHHCC---CCcEEEEEeCCHHHHHHHHHHHHHhCCC--CEEEEEccccchHHhhccCCCCcE
Q 026219 125 LPLMVDIGSGSGRFLIWLARRNP---DSGNYLGLEIRQKLVKRAEFWVQELALS--NIHFLFANASVSFKQLVSSYPGPL 199 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~p---~~~~v~giDis~~~v~~a~~~~~~~~l~--ni~~~~~D~~~~~~~~~~~~~~~~ 199 (241)
...|.|..||+|.++....+... ....++|-|..+.+...++.++.-.+.. ......+|-....+.. ....+
T Consensus 218 ~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~---~~~~~ 294 (501)
T TIGR00497 218 VDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWE---NENGF 294 (501)
T ss_pred CCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCcccc---ccccC
Confidence 46899999999999987554321 1146999999999999999886554432 3344445543311111 12346
Q ss_pred eEEEEeCCC--Cchhh-----hhhhcc----------cchHHHHHHHHhccccCCEE
Q 026219 200 MLVSILCPD--PHFKK-----KHHKRR----------VVQKPLVDSIIDYLMPGGKV 239 (241)
Q Consensus 200 d~V~~~~~~--~~~~~-----~~~~~r----------~~~~~ll~~l~r~LkpGG~l 239 (241)
|.|+.+.|. .|... ....+. --...++..+...|++||+.
T Consensus 295 D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~ 351 (501)
T TIGR00497 295 EVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTA 351 (501)
T ss_pred CEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeE
Confidence 666555432 11100 000111 02358888899999999964
No 357
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=84.21 E-value=6.8 Score=32.93 Aligned_cols=101 Identities=20% Similarity=0.308 Sum_probs=61.7
Q ss_pred CCCcEEEEcCCccHHHHHHHHH---CCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccch-----HHhhccCC
Q 026219 124 TLPLMVDIGSGSGRFLIWLARR---NPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVS-----FKQLVSSY 195 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~---~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~-----~~~~~~~~ 195 (241)
+...|+|+|.-.|..++.+|.. .....+|+++||+-...+.+.. ..+.|.|++++-.+. .....+.+
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~-----e~p~i~f~egss~dpai~eqi~~~~~~y 143 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAR-----EVPDILFIEGSSTDPAIAEQIRRLKNEY 143 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhh-----cCCCeEEEeCCCCCHHHHHHHHHHhcCC
Confidence 4578999999999998887753 2323689999998766554432 147899999987653 11211112
Q ss_pred CCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 196 PGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 196 ~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
+ -..++.-++...+. .-+-++.+.++|.-|-.++
T Consensus 144 ~---kIfvilDsdHs~~h--------vLAel~~~~pllsaG~Y~v 177 (237)
T COG3510 144 P---KIFVILDSDHSMEH--------VLAELKLLAPLLSAGDYLV 177 (237)
T ss_pred C---cEEEEecCCchHHH--------HHHHHHHhhhHhhcCceEE
Confidence 2 22334444443211 1255666777777776554
No 358
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=84.06 E-value=7.3 Score=37.56 Aligned_cols=66 Identities=15% Similarity=0.133 Sum_probs=41.6
Q ss_pred CCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccC-CCCcEeEEEEeCCC
Q 026219 133 SGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSS-YPGPLMLVSILCPD 208 (241)
Q Consensus 133 CGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~-~~~~~d~V~~~~~~ 208 (241)
||.|..+..+++.. .+ .+++.+|.+++.++.+++ .+...+.+|+.+. ..... .-...|.+++..++
T Consensus 423 ~G~G~~G~~la~~L~~~g-~~vvvId~d~~~~~~~~~-------~g~~~i~GD~~~~--~~L~~a~i~~a~~viv~~~~ 491 (558)
T PRK10669 423 VGYGRVGSLLGEKLLAAG-IPLVVIETSRTRVDELRE-------RGIRAVLGNAANE--EIMQLAHLDCARWLLLTIPN 491 (558)
T ss_pred ECCChHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHH-------CCCeEEEcCCCCH--HHHHhcCccccCEEEEEcCC
Confidence 55566666666643 23 479999999998887753 2578999999862 11111 11345666666554
No 359
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=84.03 E-value=6 Score=35.78 Aligned_cols=94 Identities=15% Similarity=0.180 Sum_probs=56.5
Q ss_pred CCCcEEEEcC-CccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCC-EEEE-EccccchHHhhccCCCCcEe
Q 026219 124 TLPLMVDIGS-GSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IHFL-FANASVSFKQLVSSYPGPLM 200 (241)
Q Consensus 124 ~~~~VLDIGC-GtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~n-i~~~-~~D~~~~~~~~~~~~~~~~d 200 (241)
++..|-=+|. |-|.++..+|+.+.- +|++||-+..--+.+ ++..|-+. +.+. ..|. ........|+.+|
T Consensus 181 pG~~vgI~GlGGLGh~aVq~AKAMG~--rV~vis~~~~kkeea---~~~LGAd~fv~~~~d~d~---~~~~~~~~dg~~~ 252 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMAVQYAKAMGM--RVTVISTSSKKKEEA---IKSLGADVFVDSTEDPDI---MKAIMKTTDGGID 252 (360)
T ss_pred CCcEEEEecCcccchHHHHHHHHhCc--EEEEEeCCchhHHHH---HHhcCcceeEEecCCHHH---HHHHHHhhcCcce
Confidence 3566666664 489999999999864 899999997544444 33345432 1111 1222 2233333456666
Q ss_pred EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
.|... .. ..++.+.++||++|++++
T Consensus 253 ~v~~~-a~---------------~~~~~~~~~lk~~Gt~V~ 277 (360)
T KOG0023|consen 253 TVSNL-AE---------------HALEPLLGLLKVNGTLVL 277 (360)
T ss_pred eeeec-cc---------------cchHHHHHHhhcCCEEEE
Confidence 55422 21 345557889999999874
No 360
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=83.99 E-value=3.6 Score=36.77 Aligned_cols=86 Identities=16% Similarity=0.179 Sum_probs=60.3
Q ss_pred HHHHCCCCcE-EEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEEeCCCCchhhhhhhccc
Q 026219 142 LARRNPDSGN-YLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRV 220 (241)
Q Consensus 142 la~~~p~~~~-v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~~~~~~~~~~~~~~r~ 220 (241)
+++++|...+ ..-+...+...|.++++++ ++.+.++|+.+.+ -..+-+.+|.+++.-...|+.+.+
T Consensus 278 FarRyp~p~Eg~lP~yl~~~~YEsir~n~~-----RV~ihha~~iE~l---~~k~ag~Vdr~iLlDaqdwmtd~q----- 344 (414)
T COG5379 278 FARRYPYPGEGALPAYLDEGVYESIRQNLR-----RVAIHHADIIELL---AGKPAGNVDRYILLDAQDWMTDGQ----- 344 (414)
T ss_pred HHhcCCCCCCCCCChhhchhhHHHHHhhhh-----heeeecccHHHHh---ccCCCCCcceEEEecchhhcccch-----
Confidence 3455543112 2567788888888887664 5899999998743 222458899887776555665443
Q ss_pred chHHHHHHHHhccccCCEEEc
Q 026219 221 VQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 221 ~~~~ll~~l~r~LkpGG~l~~ 241 (241)
...++.++.+-+.+|..++|
T Consensus 345 -ln~lws~isrta~~gA~Vif 364 (414)
T COG5379 345 -LNSLWSEISRTAEAGARVIF 364 (414)
T ss_pred -HHHHHHHHhhccCCCcEEEE
Confidence 36899999999999998875
No 361
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=83.89 E-value=0.63 Score=35.27 Aligned_cols=19 Identities=32% Similarity=0.558 Sum_probs=17.2
Q ss_pred HHHHHHHHhccccCCEEEc
Q 026219 223 KPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 223 ~~ll~~l~r~LkpGG~l~~ 241 (241)
..+++.+++.|+|||.+++
T Consensus 24 ~~~f~~~~~~L~pGG~lil 42 (110)
T PF06859_consen 24 KRFFRRIYSLLRPGGILIL 42 (110)
T ss_dssp HHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHhhCCCCEEEE
Confidence 4899999999999999985
No 362
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=83.36 E-value=11 Score=33.23 Aligned_cols=94 Identities=18% Similarity=0.180 Sum_probs=55.2
Q ss_pred CCCcEEEEcCCc-cHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccc--cchHHhhccCCCCcEe
Q 026219 124 TLPLMVDIGSGS-GRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANA--SVSFKQLVSSYPGPLM 200 (241)
Q Consensus 124 ~~~~VLDIGCGt-G~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~--~~~~~~~~~~~~~~~d 200 (241)
++.+||-.|+|. |..+..+++...- ..+++++.+++..+.+++ .+.. .++..+- .+.+.... ....+|
T Consensus 159 ~~~~vlI~g~g~~g~~~~~lA~~~G~-~~v~~~~~~~~~~~~l~~----~g~~--~~~~~~~~~~~~~~~~~--~~~~~d 229 (343)
T cd08236 159 LGDTVVVIGAGTIGLLAIQWLKILGA-KRVIAVDIDDEKLAVARE----LGAD--DTINPKEEDVEKVRELT--EGRGAD 229 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHH----cCCC--EEecCccccHHHHHHHh--CCCCCC
Confidence 456788888765 7788888887543 239999999887766532 3432 2222111 11111111 123477
Q ss_pred EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
.++-.... ...+..+.+.|+++|+++
T Consensus 230 ~vld~~g~--------------~~~~~~~~~~l~~~G~~v 255 (343)
T cd08236 230 LVIEAAGS--------------PATIEQALALARPGGKVV 255 (343)
T ss_pred EEEECCCC--------------HHHHHHHHHHhhcCCEEE
Confidence 66533211 256778899999999875
No 363
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=83.01 E-value=13 Score=32.84 Aligned_cols=95 Identities=13% Similarity=0.120 Sum_probs=53.3
Q ss_pred CCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCC-EEEEEccccchHHhhccCCCCcEeEE
Q 026219 125 LPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IHFLFANASVSFKQLVSSYPGPLMLV 202 (241)
Q Consensus 125 ~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~n-i~~~~~D~~~~~~~~~~~~~~~~d~V 202 (241)
+.+||=.|+| .|..+..+++.... .+++++|.++...+.+++ .+.+. +.....+....+.... ....+|.+
T Consensus 167 g~~vlI~g~g~~g~~~~~~a~~~G~-~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~--~~~~~d~v 239 (345)
T cd08286 167 GDTVAIVGAGPVGLAALLTAQLYSP-SKIIMVDLDDNRLEVAKK----LGATHTVNSAKGDAIEQVLELT--DGRGVDVV 239 (345)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHH----hCCCceeccccccHHHHHHHHh--CCCCCCEE
Confidence 4454446765 45666677777663 478999998877666543 34322 1111122211122222 12347766
Q ss_pred EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
+-.... ...++.+.+.|+++|+++
T Consensus 240 ld~~g~--------------~~~~~~~~~~l~~~g~~v 263 (345)
T cd08286 240 IEAVGI--------------PATFELCQELVAPGGHIA 263 (345)
T ss_pred EECCCC--------------HHHHHHHHHhccCCcEEE
Confidence 532221 156778889999999886
No 364
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=82.86 E-value=15 Score=32.62 Aligned_cols=96 Identities=18% Similarity=0.193 Sum_probs=55.2
Q ss_pred CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219 124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV 202 (241)
Q Consensus 124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V 202 (241)
++.+||=.|+| .|..+..+++...- ..|+.++.+++..+.+++ .|.. .++..+-.+..+.+.....+.+|.+
T Consensus 175 ~~~~vlI~g~g~vg~~~~~~a~~~G~-~~v~~~~~~~~~~~~~~~----~g~~--~~~~~~~~~~~~~~~~~~~~~~d~v 247 (350)
T cd08240 175 ADEPVVIIGAGGLGLMALALLKALGP-ANIIVVDIDEAKLEAAKA----AGAD--VVVNGSDPDAAKRIIKAAGGGVDAV 247 (350)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHH----hCCc--EEecCCCccHHHHHHHHhCCCCcEE
Confidence 35677777876 56666677776543 378999999887777643 3432 2222111111111111112256766
Q ss_pred EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
+-.... ...++...+.|+++|.++
T Consensus 248 id~~g~--------------~~~~~~~~~~l~~~g~~v 271 (350)
T cd08240 248 IDFVNN--------------SATASLAFDILAKGGKLV 271 (350)
T ss_pred EECCCC--------------HHHHHHHHHHhhcCCeEE
Confidence 533221 267888899999999876
No 365
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=82.57 E-value=8.6 Score=35.35 Aligned_cols=100 Identities=17% Similarity=0.208 Sum_probs=57.0
Q ss_pred CCCcEEEEc-CC-ccHHHHHHHHHCC-CCcEEEEEeCCHHHHHHHHHHHHHh----CCCCEEEEEc----cccchHHhhc
Q 026219 124 TLPLMVDIG-SG-SGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQEL----ALSNIHFLFA----NASVSFKQLV 192 (241)
Q Consensus 124 ~~~~VLDIG-CG-tG~~~~~la~~~p-~~~~v~giDis~~~v~~a~~~~~~~----~l~ni~~~~~----D~~~~~~~~~ 192 (241)
.+.+||=+| +| .|..+..+++... +..+|+++|.+++.++.+++..... |. ...++.. |..+.+....
T Consensus 175 ~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga-~~~~i~~~~~~~~~~~v~~~t 253 (410)
T cd08238 175 PGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGI-ELLYVNPATIDDLHATLMELT 253 (410)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCc-eEEEECCCccccHHHHHHHHh
Confidence 356777786 45 7888888888742 2137999999999998887632100 11 1122211 1111111111
Q ss_pred cCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 193 SSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 193 ~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
....+|.++.....+ ..++...+.|+++|.++
T Consensus 254 --~g~g~D~vid~~g~~--------------~~~~~a~~~l~~~G~~v 285 (410)
T cd08238 254 --GGQGFDDVFVFVPVP--------------ELVEEADTLLAPDGCLN 285 (410)
T ss_pred --CCCCCCEEEEcCCCH--------------HHHHHHHHHhccCCeEE
Confidence 123477665433322 67777889999888654
No 366
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=82.42 E-value=16 Score=32.28 Aligned_cols=92 Identities=11% Similarity=0.091 Sum_probs=57.5
Q ss_pred CCCcEEEEcC--CccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEE-c---cccchHHhhccCCCC
Q 026219 124 TLPLMVDIGS--GSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLF-A---NASVSFKQLVSSYPG 197 (241)
Q Consensus 124 ~~~~VLDIGC--GtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~-~---D~~~~~~~~~~~~~~ 197 (241)
++.+||=.|+ |.|..+..+++.. + .++++++.+++..+.+++. .|... ++. . |..+.+.... +.
T Consensus 151 ~g~~VlI~Ga~G~vG~~aiqlAk~~-G-~~Vi~~~~~~~~~~~~~~~---lGa~~--vi~~~~~~~~~~~i~~~~---~~ 220 (338)
T cd08295 151 KGETVFVSAASGAVGQLVGQLAKLK-G-CYVVGSAGSDEKVDLLKNK---LGFDD--AFNYKEEPDLDAALKRYF---PN 220 (338)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHc-C-CEEEEEeCCHHHHHHHHHh---cCCce--eEEcCCcccHHHHHHHhC---CC
Confidence 4678888886 5788888888875 3 5799999998877776542 35432 222 1 2222122211 24
Q ss_pred cEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 198 PLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 198 ~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
.+|.++-. .. ...++...+.|+++|+++
T Consensus 221 gvd~v~d~-~g--------------~~~~~~~~~~l~~~G~iv 248 (338)
T cd08295 221 GIDIYFDN-VG--------------GKMLDAVLLNMNLHGRIA 248 (338)
T ss_pred CcEEEEEC-CC--------------HHHHHHHHHHhccCcEEE
Confidence 57766532 21 155677889999999886
No 367
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=82.19 E-value=13 Score=32.89 Aligned_cols=94 Identities=14% Similarity=0.127 Sum_probs=52.8
Q ss_pred CCcEEEEcCCc-cHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCE-EEEEccccchHHhhccCCCCcEeEE
Q 026219 125 LPLMVDIGSGS-GRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNI-HFLFANASVSFKQLVSSYPGPLMLV 202 (241)
Q Consensus 125 ~~~VLDIGCGt-G~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni-~~~~~D~~~~~~~~~~~~~~~~d~V 202 (241)
+.+||=.|+|. |..+..+++.... ..+++++-+++-.+.+++ .+.+.+ .....+.. .+.... ....+|.+
T Consensus 164 g~~vlV~g~g~vg~~~~~la~~~G~-~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~-~~~~~~--~~~~vd~v 235 (341)
T cd05281 164 GKSVLITGCGPIGLMAIAVAKAAGA-SLVIASDPNPYRLELAKK----MGADVVINPREEDVV-EVKSVT--DGTGVDVV 235 (341)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC-cEEEEECCCHHHHHHHHH----hCcceeeCcccccHH-HHHHHc--CCCCCCEE
Confidence 45566677763 6777788887643 368888888876665543 343211 11111221 111211 12457765
Q ss_pred EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
+-.... ...++.+.+.|+++|+++
T Consensus 236 ld~~g~--------------~~~~~~~~~~l~~~G~~v 259 (341)
T cd05281 236 LEMSGN--------------PKAIEQGLKALTPGGRVS 259 (341)
T ss_pred EECCCC--------------HHHHHHHHHHhccCCEEE
Confidence 533222 256777889999999876
No 368
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=82.07 E-value=17 Score=32.52 Aligned_cols=92 Identities=11% Similarity=0.080 Sum_probs=57.6
Q ss_pred CCCcEEEEcC--CccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEc----cccchHHhhccCCCC
Q 026219 124 TLPLMVDIGS--GSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFA----NASVSFKQLVSSYPG 197 (241)
Q Consensus 124 ~~~~VLDIGC--GtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~----D~~~~~~~~~~~~~~ 197 (241)
++.+||=.|+ |.|..+..+++.. + .++++++.+++..+.+++ +.|.+. ++.. |..+.+.... +.
T Consensus 158 ~g~~VlV~GaaG~vG~~aiqlAk~~-G-~~Vi~~~~~~~k~~~~~~---~lGa~~--vi~~~~~~~~~~~i~~~~---~~ 227 (348)
T PLN03154 158 KGDSVFVSAASGAVGQLVGQLAKLH-G-CYVVGSAGSSQKVDLLKN---KLGFDE--AFNYKEEPDLDAALKRYF---PE 227 (348)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHc-C-CEEEEEcCCHHHHHHHHH---hcCCCE--EEECCCcccHHHHHHHHC---CC
Confidence 4678888887 4888889999875 4 579999999987776642 235432 2221 2222121211 23
Q ss_pred cEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 198 PLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 198 ~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
.+|.++ .... ...++...+.|++||+++
T Consensus 228 gvD~v~-d~vG--------------~~~~~~~~~~l~~~G~iv 255 (348)
T PLN03154 228 GIDIYF-DNVG--------------GDMLDAALLNMKIHGRIA 255 (348)
T ss_pred CcEEEE-ECCC--------------HHHHHHHHHHhccCCEEE
Confidence 577654 3222 156677889999999886
No 369
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=81.78 E-value=7.8 Score=30.13 Aligned_cols=67 Identities=16% Similarity=0.264 Sum_probs=35.6
Q ss_pred CCcEEEEcCCcc-HHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219 125 LPLMVDIGSGSG-RFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS 203 (241)
Q Consensus 125 ~~~VLDIGCGtG-~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~ 203 (241)
..+|+|||-|.= ..+..|++. + ..|+++|+.+. .+ . ..+.++..|+.+.-..+. ...|+|.
T Consensus 14 ~~kiVEVGiG~~~~vA~~L~~~--G-~dV~~tDi~~~---~a-------~-~g~~~v~DDif~P~l~iY----~~a~lIY 75 (127)
T PF03686_consen 14 YGKIVEVGIGFNPEVAKKLKER--G-FDVIATDINPR---KA-------P-EGVNFVVDDIFNPNLEIY----EGADLIY 75 (127)
T ss_dssp SSEEEEET-TT--HHHHHHHHH--S--EEEEE-SS-S---------------STTEE---SSS--HHHH----TTEEEEE
T ss_pred CCcEEEECcCCCHHHHHHHHHc--C-CcEEEEECccc---cc-------c-cCcceeeecccCCCHHHh----cCCcEEE
Confidence 469999999965 555666666 4 67999999997 11 1 356789999976322222 3467776
Q ss_pred EeCCCC
Q 026219 204 ILCPDP 209 (241)
Q Consensus 204 ~~~~~~ 209 (241)
..-|.+
T Consensus 76 SiRPP~ 81 (127)
T PF03686_consen 76 SIRPPP 81 (127)
T ss_dssp EES--T
T ss_pred EeCCCh
Confidence 665544
No 370
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=81.76 E-value=9.1 Score=35.76 Aligned_cols=84 Identities=12% Similarity=0.069 Sum_probs=52.7
Q ss_pred CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219 124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV 202 (241)
Q Consensus 124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V 202 (241)
.+.+|+=+|+| .|......++.. + .+|+.+|+++...+.|+. .|. +.. +..+ .. ...|+|
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~-G-a~ViV~d~d~~R~~~A~~----~G~---~~~--~~~e----~v----~~aDVV 261 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQ-G-ARVIVTEVDPICALQAAM----EGY---EVM--TMEE----AV----KEGDIF 261 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-C-CEEEEEECChhhHHHHHh----cCC---EEc--cHHH----HH----cCCCEE
Confidence 47899999999 466666666655 3 579999999987776643 343 221 1111 12 234665
Q ss_pred EEeCCCCchhhhhhhcccchHHHHHH-HHhccccCCEEE
Q 026219 203 SILCPDPHFKKKHHKRRVVQKPLVDS-IIDYLMPGGKVY 240 (241)
Q Consensus 203 ~~~~~~~~~~~~~~~~r~~~~~ll~~-l~r~LkpGG~l~ 240 (241)
+..-..+ ..++. ..+.+|+||+++
T Consensus 262 I~atG~~--------------~~i~~~~l~~mk~Ggilv 286 (413)
T cd00401 262 VTTTGNK--------------DIITGEHFEQMKDGAIVC 286 (413)
T ss_pred EECCCCH--------------HHHHHHHHhcCCCCcEEE
Confidence 5432222 45554 588999999885
No 371
>PRK08703 short chain dehydrogenase; Provisional
Probab=81.68 E-value=11 Score=31.26 Aligned_cols=59 Identities=10% Similarity=-0.036 Sum_probs=39.0
Q ss_pred CCcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEcccc
Q 026219 125 LPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANAS 185 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~ 185 (241)
+.++|=.|+ +|.++..+++.+ .+ .+|++++.+++..+...+.+.+.+...+.++..|+.
T Consensus 6 ~k~vlItG~-sggiG~~la~~l~~~g-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~ 66 (239)
T PRK08703 6 DKTILVTGA-SQGLGEQVAKAYAAAG-ATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLM 66 (239)
T ss_pred CCEEEEECC-CCcHHHHHHHHHHHcC-CEEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeec
Confidence 467888995 566666655544 24 689999999987766655554444334566777764
No 372
>PRK07102 short chain dehydrogenase; Provisional
Probab=81.63 E-value=8.6 Score=32.12 Aligned_cols=60 Identities=10% Similarity=-0.047 Sum_probs=40.6
Q ss_pred CcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccch
Q 026219 126 PLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVS 187 (241)
Q Consensus 126 ~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~ 187 (241)
.+++=.| |+|.++..+++++ .+ .+|++++.+++-.+...+.+...+-.++.++.+|+.+.
T Consensus 2 ~~vlItG-as~giG~~~a~~l~~~G-~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~ 63 (243)
T PRK07102 2 KKILIIG-ATSDIARACARRYAAAG-ARLYLAARDVERLERLADDLRARGAVAVSTHELDILDT 63 (243)
T ss_pred cEEEEEc-CCcHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCCh
Confidence 3577777 4566666666554 24 68999999987666555544443335789999999763
No 373
>PLN02702 L-idonate 5-dehydrogenase
Probab=81.53 E-value=14 Score=33.10 Aligned_cols=98 Identities=13% Similarity=0.148 Sum_probs=55.5
Q ss_pred CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEE---ccccchHHhhccCCCCcE
Q 026219 124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLF---ANASVSFKQLVSSYPGPL 199 (241)
Q Consensus 124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~---~D~~~~~~~~~~~~~~~~ 199 (241)
.+.+||=+|+| .|..+..+++...- ..++++|.++...+.+++ .+.+.+..+. .+..+.+..........+
T Consensus 181 ~g~~vlI~g~g~vG~~~~~~a~~~G~-~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (364)
T PLN02702 181 PETNVLVMGAGPIGLVTMLAARAFGA-PRIVIVDVDDERLSVAKQ----LGADEIVLVSTNIEDVESEVEEIQKAMGGGI 255 (364)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHH----hCCCEEEecCcccccHHHHHHHHhhhcCCCC
Confidence 45677777875 56677777887543 358999999877776543 3543222111 122111111110112357
Q ss_pred eEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 200 MLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 200 d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
|.|+-....+ ..+....+.|+++|+++
T Consensus 256 d~vid~~g~~--------------~~~~~~~~~l~~~G~~v 282 (364)
T PLN02702 256 DVSFDCVGFN--------------KTMSTALEATRAGGKVC 282 (364)
T ss_pred CEEEECCCCH--------------HHHHHHHHHHhcCCEEE
Confidence 7654332212 56788899999999876
No 374
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=81.44 E-value=12 Score=33.94 Aligned_cols=43 Identities=16% Similarity=0.205 Sum_probs=33.3
Q ss_pred CCCcEEEEcCCc-cHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHH
Q 026219 124 TLPLMVDIGSGS-GRFLIWLARRNPDSGNYLGLEIRQKLVKRAEF 167 (241)
Q Consensus 124 ~~~~VLDIGCGt-G~~~~~la~~~p~~~~v~giDis~~~v~~a~~ 167 (241)
++.++.=+|+|. |.....-++.... .+++|||++++-.+.|++
T Consensus 192 ~GstvAVfGLG~VGLav~~Gaka~GA-srIIgvDiN~~Kf~~ak~ 235 (375)
T KOG0022|consen 192 PGSTVAVFGLGGVGLAVAMGAKAAGA-SRIIGVDINPDKFEKAKE 235 (375)
T ss_pred CCCEEEEEecchHHHHHHHhHHhcCc-ccEEEEecCHHHHHHHHh
Confidence 478899999984 5555555666555 799999999999988865
No 375
>COG4121 Uncharacterized conserved protein [Function unknown]
Probab=81.37 E-value=3.8 Score=35.68 Aligned_cols=110 Identities=11% Similarity=0.069 Sum_probs=63.4
Q ss_pred CCcEEEEcCCccHHHHHHHHHCCC-----------CcEEEEEeCCHHHHHHHH-------------HH------------
Q 026219 125 LPLMVDIGSGSGRFLIWLARRNPD-----------SGNYLGLEIRQKLVKRAE-------------FW------------ 168 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~p~-----------~~~v~giDis~~~v~~a~-------------~~------------ 168 (241)
...|+|+|-|+|...+.+-+.++. ...+++++.+|.....+. +-
T Consensus 59 ~~~i~E~gfgtglnfl~~~~~~~~~~~~~~~~~~~~l~~~S~e~~P~~~~~l~~l~~~pel~~~~~~l~~~~~~~~~~~~ 138 (252)
T COG4121 59 ILQILEIGFGTGLNFLTAHLAIGDARQAKLEVVLLDLKFDSIELDPFSPPKCPALWTVPFLCHLADALAPTGPLATYGCA 138 (252)
T ss_pred ceeehhhhcccchhHHHHHhhhhhhhhccccccccccceEEEEeCCCChhhhHHHhhhhhHHHHHHHHhhccCcccchhH
Confidence 568999999999888776654432 235788888754322211 10
Q ss_pred -HHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 169 -VQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 169 -~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
+...|..++....+|+.+.++.....-+ .+|..++.-..|. +++ .+-.+.+++.+++..+|||++.
T Consensus 139 r~~~~g~~~l~l~~gd~~~~~p~~~~~~~-~~dAwflDgFsP~-kNP----~mW~~e~l~~~a~~~~~~~~l~ 205 (252)
T COG4121 139 AAVRHGLLLLGLVIGDAGDGIPPVPRRRP-GTDAWFLDGFRPV-KNP----EMWEDELLNLMARIPYRDPTLA 205 (252)
T ss_pred HhhhcchheeeeeeeehhhcCCccccccc-CccEEecCCcccc-CCh----hhccHHHHHHHHhhcCCCCcee
Confidence 1011333566777888764433211111 5666554322221 111 2334699999999999999873
No 376
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=81.35 E-value=4.2 Score=35.37 Aligned_cols=48 Identities=25% Similarity=0.201 Sum_probs=41.2
Q ss_pred CCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHh
Q 026219 122 NPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQEL 172 (241)
Q Consensus 122 ~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~ 172 (241)
...+.+|||-=+|+|.++....+.. -.++|+|++++-++.+.++....
T Consensus 220 s~~~diVlDpf~GsGtt~~aa~~~~---r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 220 SFPGDIVLDPFAGSGTTGIAAKNLG---RRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred CCCCCEEeecCCCCChHHHHHHHcC---CceEEEecCHHHHHHHHHHHHhh
Confidence 3458999999999999999887764 35999999999999999988754
No 377
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=81.28 E-value=15 Score=32.41 Aligned_cols=94 Identities=15% Similarity=0.100 Sum_probs=55.2
Q ss_pred CCCcEEEEcCCc-cHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccc------hHHhhccCCC
Q 026219 124 TLPLMVDIGSGS-GRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV------SFKQLVSSYP 196 (241)
Q Consensus 124 ~~~~VLDIGCGt-G~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~------~~~~~~~~~~ 196 (241)
++.+||=.|+|. |..+..+++.... ..+++++.+++..+.+++ .+.++ ++..+-.. .+.... ..
T Consensus 162 ~g~~vlI~g~g~vG~~a~~lak~~G~-~~v~~~~~~~~~~~~~~~----~g~~~--vi~~~~~~~~~~~~~~~~~~--~~ 232 (343)
T cd05285 162 PGDTVLVFGAGPIGLLTAAVAKAFGA-TKVVVTDIDPSRLEFAKE----LGATH--TVNVRTEDTPESAEKIAELL--GG 232 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEECCCHHHHHHHHH----cCCcE--EeccccccchhHHHHHHHHh--CC
Confidence 356666678764 7788888887654 238999998887776643 23322 22111111 111111 12
Q ss_pred CcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 197 GPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 197 ~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
..+|.|+-.... ...++...+.|+++|+++
T Consensus 233 ~~~d~vld~~g~--------------~~~~~~~~~~l~~~G~~v 262 (343)
T cd05285 233 KGPDVVIECTGA--------------ESCIQTAIYATRPGGTVV 262 (343)
T ss_pred CCCCEEEECCCC--------------HHHHHHHHHHhhcCCEEE
Confidence 347766543221 147788899999999876
No 378
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=81.12 E-value=9 Score=37.64 Aligned_cols=74 Identities=15% Similarity=0.143 Sum_probs=44.7
Q ss_pred CcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEE
Q 026219 126 PLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSI 204 (241)
Q Consensus 126 ~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~ 204 (241)
..|+=+|+| .|.......++. + ..++.+|.+++.++.+++ .+..++.+|+++. +.+..-.-...+.+++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~-g-~~vvvID~d~~~v~~~~~-------~g~~v~~GDat~~-~~L~~agi~~A~~vvv 470 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSS-G-VKMTVLDHDPDHIETLRK-------FGMKVFYGDATRM-DLLESAGAAKAEVLIN 470 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhC-C-CCEEEEECCHHHHHHHHh-------cCCeEEEEeCCCH-HHHHhcCCCcCCEEEE
Confidence 557767776 444444433332 3 469999999999988754 2457899999863 1111111234566666
Q ss_pred eCCCC
Q 026219 205 LCPDP 209 (241)
Q Consensus 205 ~~~~~ 209 (241)
...++
T Consensus 471 ~~~d~ 475 (621)
T PRK03562 471 AIDDP 475 (621)
T ss_pred EeCCH
Confidence 65554
No 379
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=80.95 E-value=15 Score=32.47 Aligned_cols=95 Identities=12% Similarity=0.099 Sum_probs=52.5
Q ss_pred CCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCC-EEEEEccccchHHhhccCCCCcEeEE
Q 026219 125 LPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IHFLFANASVSFKQLVSSYPGPLMLV 202 (241)
Q Consensus 125 ~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~n-i~~~~~D~~~~~~~~~~~~~~~~d~V 202 (241)
+.+||=.|+| .|..+..+++.... ..|++++.++...+.+++ .+... +.....+..+.+.... ....+|.+
T Consensus 162 g~~vlI~~~g~vg~~a~~la~~~G~-~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~l~~~~--~~~~~d~v 234 (340)
T TIGR00692 162 GKSVLVTGAGPIGLMAIAVAKASGA-YPVIVSDPNEYRLELAKK----MGATYVVNPFKEDVVKEVADLT--DGEGVDVF 234 (340)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC-cEEEEECCCHHHHHHHHH----hCCcEEEcccccCHHHHHHHhc--CCCCCCEE
Confidence 4556556765 56677777776543 238899888877666543 34321 1111112211111111 12447766
Q ss_pred EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
+-.... ...+.++.+.|+++|+++
T Consensus 235 ld~~g~--------------~~~~~~~~~~l~~~g~~v 258 (340)
T TIGR00692 235 LEMSGA--------------PKALEQGLQAVTPGGRVS 258 (340)
T ss_pred EECCCC--------------HHHHHHHHHhhcCCCEEE
Confidence 533221 256778899999999875
No 380
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=80.91 E-value=13 Score=34.53 Aligned_cols=56 Identities=18% Similarity=0.179 Sum_probs=39.1
Q ss_pred CcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccc
Q 026219 126 PLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV 186 (241)
Q Consensus 126 ~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~ 186 (241)
.+||=|||| .|........+..+ .+|+..|.|++..+.+.... ..+++.++.|+.+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d-~~V~iAdRs~~~~~~i~~~~----~~~v~~~~vD~~d 58 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGD-GEVTIADRSKEKCARIAELI----GGKVEALQVDAAD 58 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHhhc----cccceeEEecccC
Confidence 468899996 45555554333444 68999999998877765432 2378889989876
No 381
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=80.86 E-value=1.3 Score=39.02 Aligned_cols=38 Identities=8% Similarity=0.110 Sum_probs=30.4
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHH
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVK 163 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~ 163 (241)
.+.+|||+|||.|.-.+....... ..+...|+|.+.++
T Consensus 116 ~~k~vLELgCg~~Lp~i~~~~~~~--~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 116 SGKRVLELGCGAALPGIFAFVKGA--VSVHFQDFNAEVLR 153 (282)
T ss_pred cCceeEecCCcccccchhhhhhcc--ceeeeEecchhhee
Confidence 468999999999988888766542 46888899888774
No 382
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=80.71 E-value=14 Score=32.80 Aligned_cols=96 Identities=17% Similarity=0.108 Sum_probs=54.1
Q ss_pred CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCE-EEEEccccchHHhhccCCCCcEeE
Q 026219 124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNI-HFLFANASVSFKQLVSSYPGPLML 201 (241)
Q Consensus 124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni-~~~~~D~~~~~~~~~~~~~~~~d~ 201 (241)
++.+||=.|+| .|..+..+++...- ..|++++.+++..+.+++ .|.+.+ .....|..+.+.... ....+|.
T Consensus 172 ~g~~vlI~g~g~vG~~a~q~a~~~G~-~~v~~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~l~~~~--~~~~~d~ 244 (351)
T cd08233 172 PGDTALVLGAGPIGLLTILALKAAGA-SKIIVSEPSEARRELAEE----LGATIVLDPTEVDVVAEVRKLT--GGGGVDV 244 (351)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHH----hCCCEEECCCccCHHHHHHHHh--CCCCCCE
Confidence 35666667764 45666667776532 279999999988777643 343211 111112111111111 1234786
Q ss_pred EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
|+-....+ ..++.+.+.|+++|+++
T Consensus 245 vid~~g~~--------------~~~~~~~~~l~~~G~~v 269 (351)
T cd08233 245 SFDCAGVQ--------------ATLDTAIDALRPRGTAV 269 (351)
T ss_pred EEECCCCH--------------HHHHHHHHhccCCCEEE
Confidence 65433222 56778889999999876
No 383
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=80.61 E-value=5.6 Score=34.40 Aligned_cols=75 Identities=21% Similarity=0.259 Sum_probs=45.3
Q ss_pred HHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEEeCCCCchhhhhhhc
Q 026219 139 LIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKR 218 (241)
Q Consensus 139 ~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~~~~~~~~~~~~~~ 218 (241)
+..|.+..++ .+|+|+|.++..++.|++ .|.-. -...+ .+ . + ...|+|++.-|...
T Consensus 2 A~aL~~~g~~-~~v~g~d~~~~~~~~a~~----~g~~~--~~~~~-~~---~-~----~~~DlvvlavP~~~-------- 57 (258)
T PF02153_consen 2 ALALRKAGPD-VEVYGYDRDPETLEAALE----LGIID--EASTD-IE---A-V----EDADLVVLAVPVSA-------- 57 (258)
T ss_dssp HHHHHHTTTT-SEEEEE-SSHHHHHHHHH----TTSSS--EEESH-HH---H-G----GCCSEEEE-S-HHH--------
T ss_pred hHHHHhCCCC-eEEEEEeCCHHHHHHHHH----CCCee--eccCC-Hh---H-h----cCCCEEEEcCCHHH--------
Confidence 5667777777 899999999998887753 35421 11111 11 1 2 22487877765322
Q ss_pred ccchHHHHHHHHhccccCCEEE
Q 026219 219 RVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 219 r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
...+++++...+++|+.+.
T Consensus 58 ---~~~~l~~~~~~~~~~~iv~ 76 (258)
T PF02153_consen 58 ---IEDVLEEIAPYLKPGAIVT 76 (258)
T ss_dssp ---HHHHHHHHHCGS-TTSEEE
T ss_pred ---HHHHHHHhhhhcCCCcEEE
Confidence 2588999999999988764
No 384
>PRK10083 putative oxidoreductase; Provisional
Probab=80.35 E-value=19 Score=31.68 Aligned_cols=95 Identities=8% Similarity=0.033 Sum_probs=51.5
Q ss_pred CCCcEEEEcCC-ccHHHHHHHHH-CCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeE
Q 026219 124 TLPLMVDIGSG-SGRFLIWLARR-NPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLML 201 (241)
Q Consensus 124 ~~~~VLDIGCG-tG~~~~~la~~-~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~ 201 (241)
.+.+||=.|+| .|..+..+++. ..- ..++++|.+++..+.+++ .|.+. ++..+-......+ ......+|.
T Consensus 160 ~g~~vlI~g~g~vG~~~~~~a~~~~G~-~~v~~~~~~~~~~~~~~~----~Ga~~--~i~~~~~~~~~~~-~~~g~~~d~ 231 (339)
T PRK10083 160 EQDVALIYGAGPVGLTIVQVLKGVYNV-KAVIVADRIDERLALAKE----SGADW--VINNAQEPLGEAL-EEKGIKPTL 231 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHH----hCCcE--EecCccccHHHHH-hcCCCCCCE
Confidence 35677778865 44555666664 333 368999999988777654 34421 1111111111111 111122444
Q ss_pred EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
++-....+ ..++...+.|+++|+++
T Consensus 232 vid~~g~~--------------~~~~~~~~~l~~~G~~v 256 (339)
T PRK10083 232 IIDAACHP--------------SILEEAVTLASPAARIV 256 (339)
T ss_pred EEECCCCH--------------HHHHHHHHHhhcCCEEE
Confidence 43222212 56777889999999886
No 385
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=80.30 E-value=30 Score=30.32 Aligned_cols=94 Identities=11% Similarity=0.027 Sum_probs=56.3
Q ss_pred CCCcEEEEcC--CccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHh-hccCCCCcEe
Q 026219 124 TLPLMVDIGS--GSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQ-LVSSYPGPLM 200 (241)
Q Consensus 124 ~~~~VLDIGC--GtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~-~~~~~~~~~d 200 (241)
++.+||=.|. |.|..+..+++.. + .++++++.+++..+.+++ .|.+. ++..+-.+.+.. .....+..+|
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~~-G-~~Vi~~~~s~~~~~~~~~----lGa~~--vi~~~~~~~~~~~~~~~~~~gvd 209 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKLK-G-CKVVGAAGSDEKVAYLKK----LGFDV--AFNYKTVKSLEETLKKASPDGYD 209 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHc-C-CEEEEEeCCHHHHHHHHH----cCCCE--EEeccccccHHHHHHHhCCCCeE
Confidence 4677877774 5888888898875 4 579999999987777643 45432 222111011111 1111124578
Q ss_pred EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
.|+-... . ..++...+.|++||+++
T Consensus 210 vv~d~~G-~--------------~~~~~~~~~l~~~G~iv 234 (325)
T TIGR02825 210 CYFDNVG-G--------------EFSNTVIGQMKKFGRIA 234 (325)
T ss_pred EEEECCC-H--------------HHHHHHHHHhCcCcEEE
Confidence 6653222 1 44577889999999986
No 386
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=79.43 E-value=13 Score=31.38 Aligned_cols=68 Identities=12% Similarity=0.093 Sum_probs=47.1
Q ss_pred hhHHHhcCCCCCcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccc
Q 026219 115 DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV 186 (241)
Q Consensus 115 ~~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~ 186 (241)
+|...+.. +++++|=.| |+|.++..+++++ .+ .+|+.++.++...+...+.++..+ .++.++.+|+.+
T Consensus 3 ~~~~~~~~-~~k~ilItG-a~g~IG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~i~~~~-~~~~~~~~Dl~d 72 (259)
T PRK08213 3 TVLELFDL-SGKTALVTG-GSRGLGLQIAEALGEAG-ARVVLSARKAEELEEAAAHLEALG-IDALWIAADVAD 72 (259)
T ss_pred cchhhhCc-CCCEEEEEC-CCchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhcC-CeEEEEEccCCC
Confidence 35554433 357788888 6677777777664 24 689999999887776665554433 367889999976
No 387
>PRK07326 short chain dehydrogenase; Provisional
Probab=79.41 E-value=9.8 Score=31.48 Aligned_cols=58 Identities=17% Similarity=-0.023 Sum_probs=40.6
Q ss_pred CCcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccc
Q 026219 125 LPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV 186 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~ 186 (241)
+.++|=+| |+|.++..+++.+ .+ .+|++++.++...+...+.+... .++.++.+|+.+
T Consensus 6 ~~~ilItG-atg~iG~~la~~l~~~g-~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~D~~~ 65 (237)
T PRK07326 6 GKVALITG-GSKGIGFAIAEALLAEG-YKVAITARDQKELEEAAAELNNK--GNVLGLAADVRD 65 (237)
T ss_pred CCEEEEEC-CCCcHHHHHHHHHHHCC-CEEEEeeCCHHHHHHHHHHHhcc--CcEEEEEccCCC
Confidence 46788888 5777777776654 24 68999999987666555544332 468889999875
No 388
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=78.90 E-value=19 Score=34.69 Aligned_cols=42 Identities=17% Similarity=0.161 Sum_probs=32.9
Q ss_pred CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHH
Q 026219 124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEF 167 (241)
Q Consensus 124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~ 167 (241)
++.+++=+|+| .|..+..+++... ..|+++|.+++.++.+++
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lG--A~V~v~d~~~~rle~a~~ 205 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLG--AIVRAFDTRPEVKEQVQS 205 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence 35799999999 5677777777654 479999999998776654
No 389
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=78.65 E-value=23 Score=31.79 Aligned_cols=94 Identities=13% Similarity=0.115 Sum_probs=53.6
Q ss_pred CCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCC-EEEEEc--cccchHHhhccCCCCcEe
Q 026219 125 LPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IHFLFA--NASVSFKQLVSSYPGPLM 200 (241)
Q Consensus 125 ~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~n-i~~~~~--D~~~~~~~~~~~~~~~~d 200 (241)
+.+||=.|+| .|..+..+++.... ..+++++.+++..+.+++ .|... +..... +..+.+.... +..+|
T Consensus 184 g~~vlI~g~g~vG~~a~~~a~~~G~-~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~l~~~~---~~~~d 255 (365)
T cd05279 184 GSTCAVFGLGGVGLSVIMGCKAAGA-SRIIAVDINKDKFEKAKQ----LGATECINPRDQDKPIVEVLTEMT---DGGVD 255 (365)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHH----hCCCeecccccccchHHHHHHHHh---CCCCc
Confidence 4566667775 45566667776543 358999999988777643 34321 111111 2111111222 24577
Q ss_pred EEEEeCCCCchhhhhhhcccchHHHHHHHHhccc-cCCEEE
Q 026219 201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLM-PGGKVY 240 (241)
Q Consensus 201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~Lk-pGG~l~ 240 (241)
.|+-....+ ..++...+.|+ ++|+++
T Consensus 256 ~vid~~g~~--------------~~~~~~~~~l~~~~G~~v 282 (365)
T cd05279 256 YAFEVIGSA--------------DTLKQALDATRLGGGTSV 282 (365)
T ss_pred EEEECCCCH--------------HHHHHHHHHhccCCCEEE
Confidence 665332222 66777888899 999886
No 390
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=78.30 E-value=3.7 Score=33.83 Aligned_cols=82 Identities=17% Similarity=0.189 Sum_probs=37.7
Q ss_pred cEEEEEeCCHHHHHHHHHH------------HHHhC-CCCEEEEEccccchHHhhccCCCCcEeEEEEeCCCCchhhhhh
Q 026219 150 GNYLGLEIRQKLVKRAEFW------------VQELA-LSNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHH 216 (241)
Q Consensus 150 ~~v~giDis~~~v~~a~~~------------~~~~~-l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~~~~~~~~~~~~ 216 (241)
.+|+|+|++++.++..++- +++.. ..++.+- .|..+. ....|.+++..+.|.-.+..
T Consensus 24 ~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~a--------i~~adv~~I~VpTP~~~~~~- 93 (185)
T PF03721_consen 24 HQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEA--------IKDADVVFICVPTPSDEDGS- 93 (185)
T ss_dssp SEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHH--------HHH-SEEEE----EBETTTS-
T ss_pred CEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhh--------hhccceEEEecCCCccccCC-
Confidence 5899999999988876421 11000 0122221 122110 12356777777655322110
Q ss_pred hcccchHHHHHHHHhccccCCEEEc
Q 026219 217 KRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 217 ~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
-..-...+.++.+.+.|++|-.+++
T Consensus 94 ~Dls~v~~a~~~i~~~l~~~~lvV~ 118 (185)
T PF03721_consen 94 PDLSYVESAIESIAPVLRPGDLVVI 118 (185)
T ss_dssp BETHHHHHHHHHHHHHHCSCEEEEE
T ss_pred ccHHHHHHHHHHHHHHHhhcceEEE
Confidence 0111235888999999998666553
No 391
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=78.12 E-value=14 Score=31.04 Aligned_cols=60 Identities=12% Similarity=-0.032 Sum_probs=42.0
Q ss_pred CCCcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccc
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV 186 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~ 186 (241)
++.++|=.|+ +|.++..+++.+ .+ .+|+.++.+++.++...+.+++.+ .++.++.+|+.+
T Consensus 10 ~~k~ilItGa-s~~IG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~ 71 (256)
T PRK06124 10 AGQVALVTGS-ARGLGFEIARALAGAG-AHVLVNGRNAATLEAAVAALRAAG-GAAEALAFDIAD 71 (256)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHHHhcC-CceEEEEccCCC
Confidence 3577888884 555566655544 24 789999999887776666565544 358889999875
No 392
>PRK06701 short chain dehydrogenase; Provisional
Probab=77.79 E-value=36 Score=29.52 Aligned_cols=59 Identities=7% Similarity=-0.073 Sum_probs=35.9
Q ss_pred CCcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHH-HHHHHHHHHHHhCCCCEEEEEccccc
Q 026219 125 LPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQK-LVKRAEFWVQELALSNIHFLFANASV 186 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~-~v~~a~~~~~~~~l~ni~~~~~D~~~ 186 (241)
+.++|=.|+ +|.++..+++++ .+ .+|+.++.++. ..+.....++..+ .++.++.+|+.+
T Consensus 46 ~k~iLItGa-sggIG~~la~~l~~~G-~~V~l~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~ 107 (290)
T PRK06701 46 GKVALITGG-DSGIGRAVAVLFAKEG-ADIAIVYLDEHEDANETKQRVEKEG-VKCLLIPGDVSD 107 (290)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCC-CEEEEEeCCcchHHHHHHHHHHhcC-CeEEEEEccCCC
Confidence 567888885 444555555443 24 67889988753 3333333343333 367889999875
No 393
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=77.59 E-value=33 Score=29.83 Aligned_cols=104 Identities=13% Similarity=0.158 Sum_probs=61.1
Q ss_pred CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC---CCEEEEEccccchH-Hhhcc-CCCC-c
Q 026219 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL---SNIHFLFANASVSF-KQLVS-SYPG-P 198 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l---~ni~~~~~D~~~~~-~~~~~-~~~~-~ 198 (241)
...|+.+|||-=.-...+... ++ ..++=+|. |++++.-++.+++.+. .+.+++.+|+.+.+ ..+.. .++. .
T Consensus 82 ~~qvV~LGaGlDTr~~Rl~~~-~~-~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ 158 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRLPWP-DG-TRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTA 158 (260)
T ss_pred CcEEEEeCCccccHHHhcCCC-CC-CeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCC
Confidence 356999999988777776322 23 56666666 5566666666665432 47889999986322 22211 1121 1
Q ss_pred EeEEE----EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 199 LMLVS----ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 199 ~d~V~----~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
-..++ +.|-++. ...++++.+.+...||+.|++
T Consensus 159 ptl~i~EGvl~YL~~~----------~v~~ll~~i~~~~~~gs~l~~ 195 (260)
T TIGR00027 159 PTAWLWEGLLMYLTEE----------AVDALLAFIAELSAPGSRLAF 195 (260)
T ss_pred CeeeeecchhhcCCHH----------HHHHHHHHHHHhCCCCcEEEE
Confidence 11222 1222221 124889999888889998865
No 394
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=77.56 E-value=18 Score=31.93 Aligned_cols=94 Identities=10% Similarity=0.089 Sum_probs=53.5
Q ss_pred CCcEEEEcCCc-cHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEc---cccchHHhhccCCCCcEe
Q 026219 125 LPLMVDIGSGS-GRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFA---NASVSFKQLVSSYPGPLM 200 (241)
Q Consensus 125 ~~~VLDIGCGt-G~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~---D~~~~~~~~~~~~~~~~d 200 (241)
+.+||=.|+|. |..+..+++.... ..+++++.+++..+.+++ .|.+. ++.. +..+.+.... ....+|
T Consensus 164 g~~vlV~~~g~vg~~~~~la~~~G~-~~v~~~~~~~~~~~~~~~----lg~~~--~~~~~~~~~~~~~~~~~--~~~~~d 234 (341)
T PRK05396 164 GEDVLITGAGPIGIMAAAVAKHVGA-RHVVITDVNEYRLELARK----MGATR--AVNVAKEDLRDVMAELG--MTEGFD 234 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHH----hCCcE--EecCccccHHHHHHHhc--CCCCCC
Confidence 45666677763 6777778887543 368888888877666543 34321 2211 1111111111 134567
Q ss_pred EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
.|+-.... ...++.+.+.|+++|.++.
T Consensus 235 ~v~d~~g~--------------~~~~~~~~~~l~~~G~~v~ 261 (341)
T PRK05396 235 VGLEMSGA--------------PSAFRQMLDNMNHGGRIAM 261 (341)
T ss_pred EEEECCCC--------------HHHHHHHHHHHhcCCEEEE
Confidence 65432221 2667778889999998763
No 395
>PRK07454 short chain dehydrogenase; Provisional
Probab=77.54 E-value=15 Score=30.55 Aligned_cols=59 Identities=10% Similarity=-0.085 Sum_probs=40.9
Q ss_pred CCcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccc
Q 026219 125 LPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV 186 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~ 186 (241)
..++|=.| |+|.++..+++.+ .+ .+|+.++.+++-.+...+.++..+ .++.++.+|+.+
T Consensus 6 ~k~vlItG-~sg~iG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~ 66 (241)
T PRK07454 6 MPRALITG-ASSGIGKATALAFAKAG-WDLALVARSQDALEALAAELRSTG-VKAAAYSIDLSN 66 (241)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhCC-CcEEEEEccCCC
Confidence 45788888 4677666666654 24 689999999876665555554333 368889999976
No 396
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=77.08 E-value=2.4 Score=36.31 Aligned_cols=56 Identities=16% Similarity=0.161 Sum_probs=47.5
Q ss_pred hhHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHH
Q 026219 115 DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQE 171 (241)
Q Consensus 115 ~~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~ 171 (241)
+..+.+...++...+|.--|.|..+..+.++.++ ..+++.|.+|-+-+.|+....+
T Consensus 34 evl~~lspv~g~sf~DmTfGagGHt~~ilqk~se-~k~yalDrDP~A~~La~~~s~e 89 (303)
T KOG2782|consen 34 EVLDILSPVRGRSFVDMTFGAGGHTSSILQKHSE-LKNYALDRDPVARKLAHFHSDE 89 (303)
T ss_pred hHHHHcCCCCCceEEEEeccCCcchHHHHHhCcH-hhhhhhccChHHHHHHHHhhHh
Confidence 4455666667889999999999999999999998 8999999999998888776543
No 397
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=76.78 E-value=35 Score=29.65 Aligned_cols=94 Identities=12% Similarity=0.039 Sum_probs=56.4
Q ss_pred CCCcEEEEc--CCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeE
Q 026219 124 TLPLMVDIG--SGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLML 201 (241)
Q Consensus 124 ~~~~VLDIG--CGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~ 201 (241)
++.+||=.| -|.|..+..+++.. + .++++++.+++..+.+++ .|.+. ++..+-.+....+....+..+|.
T Consensus 143 ~g~~vlI~ga~g~vG~~aiqlA~~~-G-~~vi~~~~s~~~~~~l~~----~Ga~~--vi~~~~~~~~~~v~~~~~~gvd~ 214 (329)
T cd08294 143 AGETVVVNGAAGAVGSLVGQIAKIK-G-CKVIGCAGSDDKVAWLKE----LGFDA--VFNYKTVSLEEALKEAAPDGIDC 214 (329)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHc-C-CEEEEEeCCHHHHHHHHH----cCCCE--EEeCCCccHHHHHHHHCCCCcEE
Confidence 456777776 45788888888875 4 579999999987777654 35432 22221111111111111245776
Q ss_pred EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
|+ .... ...++...+.|+++|+++
T Consensus 215 vl-d~~g--------------~~~~~~~~~~l~~~G~iv 238 (329)
T cd08294 215 YF-DNVG--------------GEFSSTVLSHMNDFGRVA 238 (329)
T ss_pred EE-ECCC--------------HHHHHHHHHhhccCCEEE
Confidence 54 3221 155678889999999876
No 398
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=76.69 E-value=28 Score=30.48 Aligned_cols=95 Identities=13% Similarity=0.135 Sum_probs=55.6
Q ss_pred CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccc-cchHHhhccCCCCcEeE
Q 026219 124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANA-SVSFKQLVSSYPGPLML 201 (241)
Q Consensus 124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~-~~~~~~~~~~~~~~~d~ 201 (241)
.+.+||=.|+| .|..+..+++...+ .++++++.+++..+.+++ .|.+. ++...- .+....+....+ .+|.
T Consensus 162 ~g~~vlV~g~g~vG~~~~~la~~~~g-~~v~~~~~~~~~~~~~~~----~g~~~--v~~~~~~~~~~~~v~~~~~-~~d~ 233 (338)
T PRK09422 162 PGQWIAIYGAGGLGNLALQYAKNVFN-AKVIAVDINDDKLALAKE----VGADL--TINSKRVEDVAKIIQEKTG-GAHA 233 (338)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCC-CeEEEEeCChHHHHHHHH----cCCcE--EecccccccHHHHHHHhcC-CCcE
Confidence 35677777765 56777777776434 589999999998887743 34422 222111 111111111112 3564
Q ss_pred EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
+++.... ...++...+.|+++|+++
T Consensus 234 vi~~~~~--------------~~~~~~~~~~l~~~G~~v 258 (338)
T PRK09422 234 AVVTAVA--------------KAAFNQAVDAVRAGGRVV 258 (338)
T ss_pred EEEeCCC--------------HHHHHHHHHhccCCCEEE
Confidence 4444322 267888899999999886
No 399
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=76.40 E-value=25 Score=31.67 Aligned_cols=91 Identities=13% Similarity=0.156 Sum_probs=51.3
Q ss_pred CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEE-ccccchHHhhccCCCCcEeE
Q 026219 124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLF-ANASVSFKQLVSSYPGPLML 201 (241)
Q Consensus 124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~-~D~~~~~~~~~~~~~~~~d~ 201 (241)
.+.+||=.|+| .|..+..+++... .++++++.+++....+ +++.|.. .++. .+. +.+.... +.+|.
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~G--a~vi~~~~~~~~~~~~---~~~~Ga~--~vi~~~~~-~~~~~~~----~~~D~ 250 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFG--LKVTVISSSSNKEDEA---INRLGAD--SFLVSTDP-EKMKAAI----GTMDY 250 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCcchhhhH---HHhCCCc--EEEcCCCH-HHHHhhc----CCCCE
Confidence 35667778887 6677777888753 4788888887543222 1233432 1221 111 1111111 23676
Q ss_pred EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
|+-....+ ..++...+.|++||+++
T Consensus 251 vid~~g~~--------------~~~~~~~~~l~~~G~iv 275 (360)
T PLN02586 251 IIDTVSAV--------------HALGPLLGLLKVNGKLI 275 (360)
T ss_pred EEECCCCH--------------HHHHHHHHHhcCCcEEE
Confidence 55332222 56777889999999886
No 400
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=76.28 E-value=29 Score=30.86 Aligned_cols=95 Identities=13% Similarity=0.091 Sum_probs=53.0
Q ss_pred CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEcc---cc---chHHhhccCCC
Q 026219 124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFAN---AS---VSFKQLVSSYP 196 (241)
Q Consensus 124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D---~~---~~~~~~~~~~~ 196 (241)
++.+||=.|+| .|..+..+++...- .+|++++.+++..+.++ +.|.+. ++..+ .. ..+.... ..
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~G~-~~v~~~~~~~~~~~~~~----~~g~~~--vi~~~~~~~~~~~~~i~~~~--~~ 247 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLAGA-RRVIVIDGSPERLELAR----EFGADA--TIDIDELPDPQRRAIVRDIT--GG 247 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHH----HcCCCe--EEcCcccccHHHHHHHHHHh--CC
Confidence 35566667765 45666667776532 28999999988766653 335432 22111 10 0111111 12
Q ss_pred CcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 197 GPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 197 ~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
..+|.++-.... ...++...+.|+++|++++
T Consensus 248 ~~~d~vid~~g~--------------~~~~~~~~~~l~~~G~~v~ 278 (361)
T cd08231 248 RGADVVIEASGH--------------PAAVPEGLELLRRGGTYVL 278 (361)
T ss_pred CCCcEEEECCCC--------------hHHHHHHHHHhccCCEEEE
Confidence 347765533221 1567778899999998863
No 401
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=75.85 E-value=25 Score=30.87 Aligned_cols=94 Identities=19% Similarity=0.197 Sum_probs=53.1
Q ss_pred CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEcccc--chHHhhccCCCCcEe
Q 026219 124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANAS--VSFKQLVSSYPGPLM 200 (241)
Q Consensus 124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~--~~~~~~~~~~~~~~d 200 (241)
++.+||=.|+| .|..+..+++.... .++++++.+++..+.++ +.+.+ .++..+-. +.+.... ....+|
T Consensus 167 ~~~~vlI~g~~~vg~~~~~~a~~~g~-~~v~~~~~~~~~~~~~~----~~g~~--~~~~~~~~~~~~i~~~~--~~~~~d 237 (340)
T cd05284 167 PGSTVVVIGVGGLGHIAVQILRALTP-ATVIAVDRSEEALKLAE----RLGAD--HVLNASDDVVEEVRELT--GGRGAD 237 (340)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHhCC-CcEEEEeCCHHHHHHHH----HhCCc--EEEcCCccHHHHHHHHh--CCCCCC
Confidence 35667667754 45555666776553 57999999888766553 33542 22221111 1111111 123477
Q ss_pred EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
.++-....+ ..++...+.|+++|+++
T Consensus 238 vvld~~g~~--------------~~~~~~~~~l~~~g~~i 263 (340)
T cd05284 238 AVIDFVGSD--------------ETLALAAKLLAKGGRYV 263 (340)
T ss_pred EEEEcCCCH--------------HHHHHHHHHhhcCCEEE
Confidence 665433222 56778889999999886
No 402
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=75.80 E-value=23 Score=32.79 Aligned_cols=75 Identities=13% Similarity=0.020 Sum_probs=46.4
Q ss_pred CCcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219 125 LPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV 202 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V 202 (241)
...++=+|+ |.++..+++.. .+ ..++.+|.+++.++..++. + .++.++.+|+.+. ..+....-...|.|
T Consensus 231 ~~~iiIiG~--G~~g~~l~~~L~~~~-~~v~vid~~~~~~~~~~~~----~-~~~~~i~gd~~~~-~~L~~~~~~~a~~v 301 (453)
T PRK09496 231 VKRVMIVGG--GNIGYYLAKLLEKEG-YSVKLIERDPERAEELAEE----L-PNTLVLHGDGTDQ-ELLEEEGIDEADAF 301 (453)
T ss_pred CCEEEEECC--CHHHHHHHHHHHhCC-CeEEEEECCHHHHHHHHHH----C-CCCeEEECCCCCH-HHHHhcCCccCCEE
Confidence 355766666 66666666654 23 5799999999988776542 1 3577899999753 11111112445666
Q ss_pred EEeCCC
Q 026219 203 SILCPD 208 (241)
Q Consensus 203 ~~~~~~ 208 (241)
++..++
T Consensus 302 i~~~~~ 307 (453)
T PRK09496 302 IALTND 307 (453)
T ss_pred EECCCC
Confidence 665554
No 403
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=75.50 E-value=15 Score=30.77 Aligned_cols=59 Identities=5% Similarity=-0.125 Sum_probs=40.9
Q ss_pred CCcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEcccc
Q 026219 125 LPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANAS 185 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~ 185 (241)
+.++|=.| |+|.++..+++.+ .+ .+|+++|.+++..+...+.+++.+..++.++.+|+.
T Consensus 12 ~k~vlItG-~~g~iG~~la~~l~~~G-~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~ 72 (247)
T PRK08945 12 DRIILVTG-AGDGIGREAALTYARHG-ATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLL 72 (247)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHCC-CcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEeccc
Confidence 57888888 5666666666554 24 689999999887766666555544446777777774
No 404
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=75.37 E-value=22 Score=32.76 Aligned_cols=33 Identities=15% Similarity=0.046 Sum_probs=21.6
Q ss_pred CccHHHHHHHHHCC-CCcEEEEEeCCHHHHHHHHH
Q 026219 134 GSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEF 167 (241)
Q Consensus 134 GtG~~~~~la~~~p-~~~~v~giDis~~~v~~a~~ 167 (241)
|.|..+..++..+. + .+|+|+|++++.++..++
T Consensus 7 GlGyvGl~~A~~lA~G-~~VigvD~d~~kv~~l~~ 40 (388)
T PRK15057 7 GTGYVGLSNGLLIAQN-HEVVALDILPSRVAMLND 40 (388)
T ss_pred CCCHHHHHHHHHHHhC-CcEEEEECCHHHHHHHHc
Confidence 44444444443322 3 579999999999888765
No 405
>PRK07904 short chain dehydrogenase; Provisional
Probab=75.30 E-value=15 Score=31.27 Aligned_cols=78 Identities=8% Similarity=0.043 Sum_probs=49.2
Q ss_pred CCcEEEEcCCccHHHHHHHHHC---CCCcEEEEEeCCHHH-HHHHHHHHHHhCCCCEEEEEccccch------HHhhccC
Q 026219 125 LPLMVDIGSGSGRFLIWLARRN---PDSGNYLGLEIRQKL-VKRAEFWVQELALSNIHFLFANASVS------FKQLVSS 194 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~---p~~~~v~giDis~~~-v~~a~~~~~~~~l~ni~~~~~D~~~~------~~~~~~~ 194 (241)
+.+||=.|+ +|.++..+++++ .+ .+|+.++.+++. ++.+.+.++..+..++.++.+|+.+. ++....
T Consensus 8 ~~~vlItGa-s~giG~~la~~l~~~gg-~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~- 84 (253)
T PRK07904 8 PQTILLLGG-TSEIGLAICERYLKNAP-ARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFA- 84 (253)
T ss_pred CcEEEEEcC-CcHHHHHHHHHHHhcCC-CeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHh-
Confidence 467888887 456666666543 23 589999998764 56555555554434789999998752 222222
Q ss_pred CCCcEeEEEEeC
Q 026219 195 YPGPLMLVSILC 206 (241)
Q Consensus 195 ~~~~~d~V~~~~ 206 (241)
. +.+|.++.+.
T Consensus 85 ~-g~id~li~~a 95 (253)
T PRK07904 85 G-GDVDVAIVAF 95 (253)
T ss_pred c-CCCCEEEEee
Confidence 1 4678766554
No 406
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=74.94 E-value=5.2 Score=35.86 Aligned_cols=113 Identities=19% Similarity=0.127 Sum_probs=66.0
Q ss_pred CcEEEEcCCccHHHHHHHHHC--------C-----------CCcEEEEEeCCHH--HHHHHHHHHHHh------------
Q 026219 126 PLMVDIGSGSGRFLIWLARRN--------P-----------DSGNYLGLEIRQK--LVKRAEFWVQEL------------ 172 (241)
Q Consensus 126 ~~VLDIGCGtG~~~~~la~~~--------p-----------~~~~v~giDis~~--~v~~a~~~~~~~------------ 172 (241)
.+||-||=|.|.=.+.++..+ + ....++.|||.+. .++.....+...
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 689999999998777776655 0 0148999999864 455444444332
Q ss_pred -C--C--CCEEEEEccccchHH-hhccC-CCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 173 -A--L--SNIHFLFANASVSFK-QLVSS-YPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 173 -~--l--~ni~~~~~D~~~~~~-~~~~~-~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
. . =++.|.+.|++.... .+... .+...++|.+.|..- +-..+.+--.-+||..+...++||-.+.|
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlN---ELfs~s~~kTt~FLl~Lt~~~~~GslLLV 240 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLN---ELFSTSISKTTKFLLRLTDICPPGSLLLV 240 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHH---HHHhcChHHHHHHHHHHHhhcCCCcEEEE
Confidence 0 1 157899999986422 11111 012345554444110 00000111224999999999999987764
No 407
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=74.87 E-value=13 Score=33.15 Aligned_cols=58 Identities=14% Similarity=0.171 Sum_probs=46.7
Q ss_pred CCCcEEEEcCCcc---HHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccc
Q 026219 124 TLPLMVDIGSGSG---RFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV 186 (241)
Q Consensus 124 ~~~~VLDIGCGtG---~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~ 186 (241)
++.+||=-|.|+| .++..+|++ + +.++-.|++++..+...+.+++.| ++....+|+.+
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~r--g-~~~vl~Din~~~~~etv~~~~~~g--~~~~y~cdis~ 97 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKR--G-AKLVLWDINKQGNEETVKEIRKIG--EAKAYTCDISD 97 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHh--C-CeEEEEeccccchHHHHHHHHhcC--ceeEEEecCCC
Confidence 4688999999888 466677777 4 569999999998888888777665 68889999976
No 408
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=74.76 E-value=36 Score=30.45 Aligned_cols=96 Identities=13% Similarity=0.051 Sum_probs=55.4
Q ss_pred CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccC-CCCcEeE
Q 026219 124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSS-YPGPLML 201 (241)
Q Consensus 124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~-~~~~~d~ 201 (241)
++.+||=.|+| .|..+..+++...- ..|++++.+++..+.++ ..+.. .++..+-.+....+... ....+|.
T Consensus 182 ~g~~vLI~g~g~vG~a~i~lak~~G~-~~Vi~~~~~~~~~~~~~----~~g~~--~vv~~~~~~~~~~l~~~~~~~~vd~ 254 (363)
T cd08279 182 PGDTVAVIGCGGVGLNAIQGARIAGA-SRIIAVDPVPEKLELAR----RFGAT--HTVNASEDDAVEAVRDLTDGRGADY 254 (363)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-CcEEEEcCCHHHHHHHH----HhCCe--EEeCCCCccHHHHHHHHcCCCCCCE
Confidence 35677777876 57777888887643 34999999988776653 23432 23322211111111111 1244775
Q ss_pred EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
++ ..... ...++.+.+.|+++|+++
T Consensus 255 vl-d~~~~-------------~~~~~~~~~~l~~~G~~v 279 (363)
T cd08279 255 AF-EAVGR-------------AATIRQALAMTRKGGTAV 279 (363)
T ss_pred EE-EcCCC-------------hHHHHHHHHHhhcCCeEE
Confidence 54 33221 156778899999999875
No 409
>PRK06949 short chain dehydrogenase; Provisional
Probab=74.70 E-value=19 Score=30.08 Aligned_cols=60 Identities=10% Similarity=0.005 Sum_probs=42.3
Q ss_pred CCCcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccc
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV 186 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~ 186 (241)
.+.+||=.| |+|.++..+++.+ .+ .+|++++.+++.++.....++..+ .++.++.+|+.+
T Consensus 8 ~~k~ilItG-asg~IG~~~a~~l~~~G-~~Vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~ 69 (258)
T PRK06949 8 EGKVALVTG-ASSGLGARFAQVLAQAG-AKVVLASRRVERLKELRAEIEAEG-GAAHVVSLDVTD 69 (258)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEecCCC
Confidence 357788888 6666666666654 24 689999999987776666554433 357888899875
No 410
>PRK06172 short chain dehydrogenase; Provisional
Probab=74.55 E-value=19 Score=30.11 Aligned_cols=59 Identities=7% Similarity=-0.060 Sum_probs=40.6
Q ss_pred CCcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccc
Q 026219 125 LPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV 186 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~ 186 (241)
+.++|=.|+ +|.++..+++++ .+ .+|+.++.+++.++...+.+++.+ .++.++.+|+.+
T Consensus 7 ~k~ilItGa-s~~iG~~ia~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~ 67 (253)
T PRK06172 7 GKVALVTGG-AAGIGRATALAFAREG-AKVVVADRDAAGGEETVALIREAG-GEALFVACDVTR 67 (253)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhcC-CceEEEEcCCCC
Confidence 467888885 455555555443 24 689999999887776666555444 368889999975
No 411
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=74.13 E-value=6.9 Score=33.68 Aligned_cols=64 Identities=13% Similarity=0.179 Sum_probs=45.4
Q ss_pred hcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccc
Q 026219 120 YKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV 186 (241)
Q Consensus 120 ~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~ 186 (241)
.+.-.+.-|.+||.|.|.++..+.+.... +..-+|+++..+.-.+-..+... .+..+.++|++.
T Consensus 46 A~~~~~~~v~eIgPgpggitR~il~a~~~--RL~vVE~D~RFip~LQ~L~EAa~-~~~~IHh~D~LR 109 (326)
T KOG0821|consen 46 AGNLTNAYVYEIGPGPGGITRSILNADVA--RLLVVEKDTRFIPGLQMLSEAAP-GKLRIHHGDVLR 109 (326)
T ss_pred ccccccceeEEecCCCCchhHHHHhcchh--heeeeeeccccChHHHHHhhcCC-cceEEeccccce
Confidence 33344678999999999999999876443 67888888877665544433222 367777888764
No 412
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=73.85 E-value=20 Score=30.16 Aligned_cols=59 Identities=12% Similarity=-0.101 Sum_probs=42.7
Q ss_pred CCcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccc
Q 026219 125 LPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV 186 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~ 186 (241)
++++|=.| |+|.++..+++++ .+ .+|+.++.+++..+...+.++..+ .++.++.+|+.+
T Consensus 10 ~k~vlItG-a~g~iG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~i~~~~-~~~~~~~~D~~~ 70 (255)
T PRK07523 10 GRRALVTG-SSQGIGYALAEGLAQAG-AEVILNGRDPAKLAAAAESLKGQG-LSAHALAFDVTD 70 (255)
T ss_pred CCEEEEEC-CcchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhcC-ceEEEEEccCCC
Confidence 57788888 5677777776654 24 689999999887776666665444 357888899876
No 413
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=73.58 E-value=22 Score=29.43 Aligned_cols=59 Identities=14% Similarity=-0.116 Sum_probs=41.0
Q ss_pred CCcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccc
Q 026219 125 LPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV 186 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~ 186 (241)
+.++|=.| |+|.++..+++++ .+ .+|+.++.+++..+.....++..+ .++.++.+|+.+
T Consensus 7 ~~~vlVtG-~sg~iG~~l~~~L~~~G-~~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~ 67 (239)
T PRK07666 7 GKNALITG-AGRGIGRAVAIALAKEG-VNVGLLARTEENLKAVAEEVEAYG-VKVVIATADVSD 67 (239)
T ss_pred CCEEEEEc-CCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHhC-CeEEEEECCCCC
Confidence 46688888 5777777776654 34 689999999876655544444333 368888999865
No 414
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=73.50 E-value=18 Score=32.05 Aligned_cols=33 Identities=18% Similarity=0.227 Sum_probs=29.1
Q ss_pred CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHH
Q 026219 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQK 160 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~ 160 (241)
+..-+|+|.-.|.++-.|-++ + ..|++||--+-
T Consensus 212 ~M~avDLGAcPGGWTyqLVkr--~-m~V~aVDng~m 244 (358)
T COG2933 212 GMWAVDLGACPGGWTYQLVKR--N-MRVYAVDNGPM 244 (358)
T ss_pred CceeeecccCCCccchhhhhc--c-eEEEEeccchh
Confidence 678999999999999999888 5 68999998764
No 415
>PRK08862 short chain dehydrogenase; Provisional
Probab=73.47 E-value=28 Score=29.17 Aligned_cols=78 Identities=12% Similarity=0.048 Sum_probs=48.6
Q ss_pred CCcEEEEcCCccH---HHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccch------HHhhccCC
Q 026219 125 LPLMVDIGSGSGR---FLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVS------FKQLVSSY 195 (241)
Q Consensus 125 ~~~VLDIGCGtG~---~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~------~~~~~~~~ 195 (241)
+.++|=.|++.|. ++..++++ + .+|+.++.+++.++...+.+++.+ .++..+.+|+.+. +......+
T Consensus 5 ~k~~lVtGas~GIG~aia~~la~~--G-~~V~~~~r~~~~l~~~~~~i~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (227)
T PRK08862 5 SSIILITSAGSVLGRTISCHFARL--G-ATLILCDQDQSALKDTYEQCSALT-DNVYSFQLKDFSQESIRHLFDAIEQQF 80 (227)
T ss_pred CeEEEEECCccHHHHHHHHHHHHC--C-CEEEEEcCCHHHHHHHHHHHHhcC-CCeEEEEccCCCHHHHHHHHHHHHHHh
Confidence 5678888888764 33334443 4 689999999998887776666554 3466777787652 12222212
Q ss_pred CCcEeEEEEeC
Q 026219 196 PGPLMLVSILC 206 (241)
Q Consensus 196 ~~~~d~V~~~~ 206 (241)
...+|.++.+.
T Consensus 81 g~~iD~li~na 91 (227)
T PRK08862 81 NRAPDVLVNNW 91 (227)
T ss_pred CCCCCEEEECC
Confidence 22678766553
No 416
>PRK06125 short chain dehydrogenase; Provisional
Probab=73.39 E-value=22 Score=30.00 Aligned_cols=78 Identities=9% Similarity=-0.075 Sum_probs=47.7
Q ss_pred CCcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccch--HHhhccCCCCcEe
Q 026219 125 LPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVS--FKQLVSSYPGPLM 200 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~--~~~~~~~~~~~~d 200 (241)
+.++|=.|+ +|.++..+++.+ .+ .+|++++.+++..+...+.++...-.++.++.+|+.+. +...... -+.+|
T Consensus 7 ~k~vlItG~-~~giG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~-~g~id 83 (259)
T PRK06125 7 GKRVLITGA-SKGIGAAAAEAFAAEG-CHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAE-AGDID 83 (259)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHH-hCCCC
Confidence 467787885 444555554433 24 68999999988777666655543334688889998752 1222221 14577
Q ss_pred EEEEe
Q 026219 201 LVSIL 205 (241)
Q Consensus 201 ~V~~~ 205 (241)
.++.+
T Consensus 84 ~lv~~ 88 (259)
T PRK06125 84 ILVNN 88 (259)
T ss_pred EEEEC
Confidence 76654
No 417
>PRK07576 short chain dehydrogenase; Provisional
Probab=73.29 E-value=22 Score=30.21 Aligned_cols=59 Identities=17% Similarity=0.019 Sum_probs=39.8
Q ss_pred CCcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccc
Q 026219 125 LPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV 186 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~ 186 (241)
+.++|=.| |+|.++..+++.+ .+ .+|++++.+++.++...+.+...+ .++.++.+|+.+
T Consensus 9 ~k~ilItG-asggIG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~ 69 (264)
T PRK07576 9 GKNVVVVG-GTSGINLGIAQAFARAG-ANVAVASRSQEKVDAAVAQLQQAG-PEGLGVSADVRD 69 (264)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHhC-CceEEEECCCCC
Confidence 56788887 5666666655543 24 689999999887665555444433 357788899875
No 418
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=73.17 E-value=31 Score=30.87 Aligned_cols=95 Identities=18% Similarity=0.184 Sum_probs=53.5
Q ss_pred CCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccC-CCCcEeEE
Q 026219 125 LPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSS-YPGPLMLV 202 (241)
Q Consensus 125 ~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~-~~~~~d~V 202 (241)
+.+||=.|+| .|..+..+++...- ..+++++.+++..+.+++ .+.. .++..+-......+... .+..+|.|
T Consensus 188 g~~VlI~g~g~vG~~~~~lak~~G~-~~vi~~~~s~~~~~~~~~----~g~~--~v~~~~~~~~~~~l~~~~~~~~~d~v 260 (367)
T cd08263 188 GETVAVIGVGGVGSSAIQLAKAFGA-SPIIAVDVRDEKLAKAKE----LGAT--HTVNAAKEDAVAAIREITGGRGVDVV 260 (367)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHH----hCCc--eEecCCcccHHHHHHHHhCCCCCCEE
Confidence 4556655765 66777777777543 349999999887776643 3432 22222111111111111 13457766
Q ss_pred EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
+-..... ..++.+.+.|+++|+++
T Consensus 261 ld~vg~~--------------~~~~~~~~~l~~~G~~v 284 (367)
T cd08263 261 VEALGKP--------------ETFKLALDVVRDGGRAV 284 (367)
T ss_pred EEeCCCH--------------HHHHHHHHHHhcCCEEE
Confidence 5332211 36777889999999875
No 419
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=73.06 E-value=27 Score=26.90 Aligned_cols=48 Identities=23% Similarity=0.277 Sum_probs=34.6
Q ss_pred CCcEEEEcCCccH-HHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccc
Q 026219 125 LPLMVDIGSGSGR-FLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV 186 (241)
Q Consensus 125 ~~~VLDIGCGtG~-~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~ 186 (241)
.++|+|+|-|-=. .+..|+++ + ..++++||++. .+ + ..+++++.|+++
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~--g-~dv~atDI~~~---~a-------~-~g~~~v~DDitn 62 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAER--G-FDVLATDINEK---TA-------P-EGLRFVVDDITN 62 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHc--C-CcEEEEecccc---cC-------c-ccceEEEccCCC
Confidence 4689999988553 34445555 3 57999999987 11 2 468899999986
No 420
>PRK08339 short chain dehydrogenase; Provisional
Probab=73.03 E-value=24 Score=30.12 Aligned_cols=60 Identities=15% Similarity=0.147 Sum_probs=39.7
Q ss_pred CCcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccc
Q 026219 125 LPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV 186 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~ 186 (241)
++++|=.|++.| ++..+++++ .+ .+|+.++.+++-++...+.++...-.++.++.+|+.+
T Consensus 8 ~k~~lItGas~g-IG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~ 69 (263)
T PRK08339 8 GKLAFTTASSKG-IGFGVARVLARAG-ADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTK 69 (263)
T ss_pred CCEEEEeCCCCc-HHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCC
Confidence 567787886654 344444433 24 6899999998877766665544322468889999876
No 421
>PRK07814 short chain dehydrogenase; Provisional
Probab=72.45 E-value=23 Score=30.00 Aligned_cols=59 Identities=10% Similarity=0.004 Sum_probs=41.1
Q ss_pred CCcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccc
Q 026219 125 LPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV 186 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~ 186 (241)
+.++|=.| |+|..+..+++.+ .+ .+|++++.+++..+...+.++..+ .++.++.+|+.+
T Consensus 10 ~~~vlItG-asggIG~~~a~~l~~~G-~~Vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~ 70 (263)
T PRK07814 10 DQVAVVTG-AGRGLGAAIALAFAEAG-ADVLIAARTESQLDEVAEQIRAAG-RRAHVVAADLAH 70 (263)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCC
Confidence 56788888 4666666666543 34 789999999877666555554333 368888999876
No 422
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=71.80 E-value=27 Score=30.04 Aligned_cols=74 Identities=15% Similarity=0.042 Sum_probs=48.6
Q ss_pred CCcEEEEcCCccHHHHHHHHHCC-CCcEEEEEeCCHH-HHHHHHHHHHHhCCCCEEEEEccccch------HHhhccCCC
Q 026219 125 LPLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQK-LVKRAEFWVQELALSNIHFLFANASVS------FKQLVSSYP 196 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~p-~~~~v~giDis~~-~v~~a~~~~~~~~l~ni~~~~~D~~~~------~~~~~~~~~ 196 (241)
.+.||=.||..|.++-.+++.+. +.+.|+++-.+-+ |-+.+. +.| +.....|+.+. ......+++
T Consensus 7 ~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~----~~g---l~~~kLDV~~~~~V~~v~~evr~~~~ 79 (289)
T KOG1209|consen 7 PKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAI----QFG---LKPYKLDVSKPEEVVTVSGEVRANPD 79 (289)
T ss_pred CCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHH----hhC---CeeEEeccCChHHHHHHHHHHhhCCC
Confidence 47899999999999999998772 2378999877644 333332 234 45566666542 122344578
Q ss_pred CcEeEEEEe
Q 026219 197 GPLMLVSIL 205 (241)
Q Consensus 197 ~~~d~V~~~ 205 (241)
+++|..+-+
T Consensus 80 Gkld~L~NN 88 (289)
T KOG1209|consen 80 GKLDLLYNN 88 (289)
T ss_pred CceEEEEcC
Confidence 999977644
No 423
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=71.43 E-value=44 Score=29.40 Aligned_cols=93 Identities=17% Similarity=0.208 Sum_probs=54.0
Q ss_pred CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219 124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV 202 (241)
Q Consensus 124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V 202 (241)
.+.+||=.|+| .|..+..+++... .+++.++.+++..+.+++ .|.+ .++...-.+....+... ..+|.+
T Consensus 163 ~~~~vlV~g~g~iG~~~~~~a~~~G--~~vi~~~~~~~~~~~~~~----~g~~--~~i~~~~~~~~~~~~~~--~~~d~v 232 (333)
T cd08296 163 PGDLVAVQGIGGLGHLAVQYAAKMG--FRTVAISRGSDKADLARK----LGAH--HYIDTSKEDVAEALQEL--GGAKLI 232 (333)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC--CeEEEEeCChHHHHHHHH----cCCc--EEecCCCccHHHHHHhc--CCCCEE
Confidence 45677777865 5666677777653 479999999887777643 3432 22221111111111111 236665
Q ss_pred EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
+-....+ ..++...+.|+++|+++
T Consensus 233 i~~~g~~--------------~~~~~~~~~l~~~G~~v 256 (333)
T cd08296 233 LATAPNA--------------KAISALVGGLAPRGKLL 256 (333)
T ss_pred EECCCch--------------HHHHHHHHHcccCCEEE
Confidence 5322122 67777889999999876
No 424
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=70.61 E-value=45 Score=30.16 Aligned_cols=96 Identities=14% Similarity=0.080 Sum_probs=52.4
Q ss_pred CCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEc----cccchHHhhccCCCCcE
Q 026219 125 LPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFA----NASVSFKQLVSSYPGPL 199 (241)
Q Consensus 125 ~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~----D~~~~~~~~~~~~~~~~ 199 (241)
+.+||=.|+| .|..++.+++.... ..+++++.+++..+.+++ .|.+.+--... +..+.+.... ....+
T Consensus 204 g~~VlV~g~g~vG~~ai~lA~~~G~-~~vi~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~~v~~~~--~g~gv 276 (384)
T cd08265 204 GAYVVVYGAGPIGLAAIALAKAAGA-SKVIAFEISEERRNLAKE----MGADYVFNPTKMRDCLSGEKVMEVT--KGWGA 276 (384)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHH----cCCCEEEcccccccccHHHHHHHhc--CCCCC
Confidence 4556555765 45555666776543 379999999886555543 35432110111 1111111222 12347
Q ss_pred eEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 200 MLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 200 d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
|.|+-....+ ...+....+.|+++|+++
T Consensus 277 Dvvld~~g~~-------------~~~~~~~~~~l~~~G~~v 304 (384)
T cd08265 277 DIQVEAAGAP-------------PATIPQMEKSIAINGKIV 304 (384)
T ss_pred CEEEECCCCc-------------HHHHHHHHHHHHcCCEEE
Confidence 8665333322 256778889999999886
No 425
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=70.57 E-value=64 Score=29.60 Aligned_cols=55 Identities=22% Similarity=0.227 Sum_probs=37.5
Q ss_pred HHHhcCCCCCcEEEEcCCccHHHHHH----HHHC--CCCcEEEEEeC----CHHHHHHHHHHHHH
Q 026219 117 SEVYKNPTLPLMVDIGSGSGRFLIWL----ARRN--PDSGNYLGLEI----RQKLVKRAEFWVQE 171 (241)
Q Consensus 117 ~~~~~~~~~~~VLDIGCGtG~~~~~l----a~~~--p~~~~v~giDi----s~~~v~~a~~~~~~ 171 (241)
.+.+...+.-.|+|+|.|.|.-...| +.+- |...++|||+. +...++.+.+++.+
T Consensus 103 leA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~ 167 (374)
T PF03514_consen 103 LEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAE 167 (374)
T ss_pred HHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHH
Confidence 34444445678999999999655444 4432 22378999999 77777777776554
No 426
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=70.08 E-value=34 Score=30.69 Aligned_cols=95 Identities=16% Similarity=0.153 Sum_probs=58.8
Q ss_pred CCCcEEEEc--CCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCC-EEEEEccccchHHhhccCCCCcEe
Q 026219 124 TLPLMVDIG--SGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IHFLFANASVSFKQLVSSYPGPLM 200 (241)
Q Consensus 124 ~~~~VLDIG--CGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~n-i~~~~~D~~~~~~~~~~~~~~~~d 200 (241)
.+.+||=.| -|.|.+++.|++.... .++++--+++-.+.++ +.|-+. +.+...|..+.+..+.. ...+|
T Consensus 142 ~g~~VLV~gaaGgVG~~aiQlAk~~G~--~~v~~~~s~~k~~~~~----~lGAd~vi~y~~~~~~~~v~~~t~--g~gvD 213 (326)
T COG0604 142 PGETVLVHGAAGGVGSAAIQLAKALGA--TVVAVVSSSEKLELLK----ELGADHVINYREEDFVEQVRELTG--GKGVD 213 (326)
T ss_pred CCCEEEEecCCchHHHHHHHHHHHcCC--cEEEEecCHHHHHHHH----hcCCCEEEcCCcccHHHHHHHHcC--CCCce
Confidence 367888888 4578999999998753 4677767776555443 345432 33444454443333321 23588
Q ss_pred EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219 201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~ 241 (241)
.|+-... ...+.+..+.|+++|+++.
T Consensus 214 vv~D~vG---------------~~~~~~~l~~l~~~G~lv~ 239 (326)
T COG0604 214 VVLDTVG---------------GDTFAASLAALAPGGRLVS 239 (326)
T ss_pred EEEECCC---------------HHHHHHHHHHhccCCEEEE
Confidence 7653321 3667778899999998863
No 427
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=69.98 E-value=37 Score=30.45 Aligned_cols=92 Identities=14% Similarity=0.088 Sum_probs=51.1
Q ss_pred CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219 124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV 202 (241)
Q Consensus 124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V 202 (241)
.+.+||=+|+| .|..+..+++... ..+++++.+++..+.+.+ +.|... .+...+. +.+.... ..+|.+
T Consensus 180 ~g~~vlV~G~G~vG~~av~~Ak~~G--~~vi~~~~~~~~~~~~~~---~~Ga~~-~i~~~~~-~~~~~~~----~~~D~v 248 (357)
T PLN02514 180 SGLRGGILGLGGVGHMGVKIAKAMG--HHVTVISSSDKKREEALE---HLGADD-YLVSSDA-AEMQEAA----DSLDYI 248 (357)
T ss_pred CCCeEEEEcccHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHH---hcCCcE-EecCCCh-HHHHHhc----CCCcEE
Confidence 35667767765 5667777777653 478889888875544432 235421 1111111 1111111 236655
Q ss_pred EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
+-....+ ..++...+.|++||+++
T Consensus 249 id~~g~~--------------~~~~~~~~~l~~~G~iv 272 (357)
T PLN02514 249 IDTVPVF--------------HPLEPYLSLLKLDGKLI 272 (357)
T ss_pred EECCCch--------------HHHHHHHHHhccCCEEE
Confidence 4322211 56777888999999876
No 428
>PRK05867 short chain dehydrogenase; Provisional
Probab=69.88 E-value=26 Score=29.35 Aligned_cols=60 Identities=7% Similarity=-0.070 Sum_probs=40.9
Q ss_pred CCCcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccc
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV 186 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~ 186 (241)
+++++|=.|++.| ++..+++++ .+ .+|+.++.+++.++...+.++..+ .++.++.+|+.+
T Consensus 8 ~~k~vlVtGas~g-IG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~ 69 (253)
T PRK05867 8 HGKRALITGASTG-IGKRVALAYVEAG-AQVAIAARHLDALEKLADEIGTSG-GKVVPVCCDVSQ 69 (253)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCC-CEEEEEcCCHHHHHHHHHHHHhcC-CeEEEEEccCCC
Confidence 3578888897544 444444433 24 689999999887777666665444 367888899875
No 429
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=69.80 E-value=42 Score=29.11 Aligned_cols=87 Identities=11% Similarity=0.071 Sum_probs=50.9
Q ss_pred CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219 124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV 202 (241)
Q Consensus 124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V 202 (241)
++.+||=.|+| .|..+..+++.. + .++++++.+++..+.+++ .|...+... .+. . ....+|.+
T Consensus 155 ~g~~vlV~g~g~vg~~~~q~a~~~-G-~~vi~~~~~~~~~~~~~~----~g~~~~~~~----~~~----~--~~~~~d~v 218 (319)
T cd08242 155 PGDKVAVLGDGKLGLLIAQVLALT-G-PDVVLVGRHSEKLALARR----LGVETVLPD----EAE----S--EGGGFDVV 218 (319)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-C-CeEEEEcCCHHHHHHHHH----cCCcEEeCc----ccc----c--cCCCCCEE
Confidence 35677777764 455555566654 3 469999999988877754 344321111 110 1 12446765
Q ss_pred EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
+-.... ...++...+.|+++|+++
T Consensus 219 id~~g~--------------~~~~~~~~~~l~~~g~~v 242 (319)
T cd08242 219 VEATGS--------------PSGLELALRLVRPRGTVV 242 (319)
T ss_pred EECCCC--------------hHHHHHHHHHhhcCCEEE
Confidence 533222 156677788889999875
No 430
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=69.72 E-value=28 Score=30.25 Aligned_cols=91 Identities=13% Similarity=0.048 Sum_probs=51.5
Q ss_pred cEEEEcCCc--cHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHH-------hCC-C---------CEEEEEccccch
Q 026219 127 LMVDIGSGS--GRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQE-------LAL-S---------NIHFLFANASVS 187 (241)
Q Consensus 127 ~VLDIGCGt--G~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~-------~~l-~---------ni~~~~~D~~~~ 187 (241)
+|.=||+|. +.++..+++. + .+|+++|++++.++.+++++++ .+. . ++++ ..|..
T Consensus 5 kI~VIG~G~mG~~ia~~la~~--g-~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~-- 78 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVA--G-YDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLD-- 78 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHC--C-CceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHH--
Confidence 456677762 3444444444 3 4799999999999876644332 221 1 1211 11211
Q ss_pred HHhhccCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEE
Q 026219 188 FKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKV 239 (241)
Q Consensus 188 ~~~~~~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l 239 (241)
. -...|+|+...++... . ...+++++.+.++|+..|
T Consensus 79 --~-----~~~aDlVi~av~e~~~-~--------k~~~~~~l~~~~~~~~il 114 (282)
T PRK05808 79 --D-----LKDADLVIEAATENMD-L--------KKKIFAQLDEIAKPEAIL 114 (282)
T ss_pred --H-----hccCCeeeecccccHH-H--------HHHHHHHHHhhCCCCcEE
Confidence 1 1335777766654321 1 138888999988887665
No 431
>PRK09291 short chain dehydrogenase; Provisional
Probab=69.47 E-value=33 Score=28.64 Aligned_cols=76 Identities=8% Similarity=-0.115 Sum_probs=45.6
Q ss_pred CcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219 126 PLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS 203 (241)
Q Consensus 126 ~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~ 203 (241)
.+||=.|+ +|.++..+++.+ .+ .+|++++.++...+...+.....+ .++.++.+|+.+.. .+.......+|.|+
T Consensus 3 ~~vlVtGa-sg~iG~~ia~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~-~~~~~~~~~id~vi 78 (257)
T PRK09291 3 KTILITGA-GSGFGREVALRLARKG-HNVIAGVQIAPQVTALRAEAARRG-LALRVEKLDLTDAI-DRAQAAEWDVDVLL 78 (257)
T ss_pred CEEEEeCC-CCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcC-CcceEEEeeCCCHH-HHHHHhcCCCCEEE
Confidence 45777776 445555555443 24 689999998876665555444444 35888899987632 11111234678766
Q ss_pred Ee
Q 026219 204 IL 205 (241)
Q Consensus 204 ~~ 205 (241)
.+
T Consensus 79 ~~ 80 (257)
T PRK09291 79 NN 80 (257)
T ss_pred EC
Confidence 54
No 432
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=69.17 E-value=47 Score=30.71 Aligned_cols=71 Identities=13% Similarity=0.124 Sum_probs=43.8
Q ss_pred EEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEEe
Q 026219 128 MVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSIL 205 (241)
Q Consensus 128 VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~ 205 (241)
|+=+| .|.++..+++.. .+ ..++.+|.+++.++.+++. ..++++.+|+.+.- .+....-...|.|++.
T Consensus 3 viIiG--~G~ig~~~a~~L~~~g-~~v~vid~~~~~~~~~~~~------~~~~~~~gd~~~~~-~l~~~~~~~a~~vi~~ 72 (453)
T PRK09496 3 IIIVG--AGQVGYTLAENLSGEN-NDVTVIDTDEERLRRLQDR------LDVRTVVGNGSSPD-VLREAGAEDADLLIAV 72 (453)
T ss_pred EEEEC--CCHHHHHHHHHHHhCC-CcEEEEECCHHHHHHHHhh------cCEEEEEeCCCCHH-HHHHcCCCcCCEEEEe
Confidence 44455 478888777753 23 5799999999987765431 24788889987521 1111112456777666
Q ss_pred CCC
Q 026219 206 CPD 208 (241)
Q Consensus 206 ~~~ 208 (241)
.++
T Consensus 73 ~~~ 75 (453)
T PRK09496 73 TDS 75 (453)
T ss_pred cCC
Confidence 554
No 433
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=68.90 E-value=47 Score=29.10 Aligned_cols=94 Identities=15% Similarity=0.123 Sum_probs=50.6
Q ss_pred CCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccC-CCCcEeEE
Q 026219 125 LPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSS-YPGPLMLV 202 (241)
Q Consensus 125 ~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~-~~~~~d~V 202 (241)
+.+||=.|+| .|..+..+++...- .++++++.+++..+.+++ .|.. .+..+-.+....+... ....+|.+
T Consensus 168 ~~~vlI~g~g~vg~~~~~~a~~~g~-~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~l~~~~~~~~~dvv 239 (344)
T cd08284 168 GDTVAVIGCGPVGLCAVLSAQVLGA-ARVFAVDPVPERLERAAA----LGAE---PINFEDAEPVERVREATEGRGADVV 239 (344)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCC-ceEEEEcCCHHHHHHHHH----hCCe---EEecCCcCHHHHHHHHhCCCCCCEE
Confidence 4566656654 44555666676542 279999888776655433 3431 2222211111111111 12447755
Q ss_pred EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
+-....+ ..++...+.|+++|+++
T Consensus 240 id~~~~~--------------~~~~~~~~~l~~~g~~v 263 (344)
T cd08284 240 LEAVGGA--------------AALDLAFDLVRPGGVIS 263 (344)
T ss_pred EECCCCH--------------HHHHHHHHhcccCCEEE
Confidence 4332221 57778889999999876
No 434
>PRK06181 short chain dehydrogenase; Provisional
Probab=68.85 E-value=30 Score=29.11 Aligned_cols=58 Identities=10% Similarity=-0.021 Sum_probs=38.2
Q ss_pred CcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccc
Q 026219 126 PLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV 186 (241)
Q Consensus 126 ~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~ 186 (241)
.++|=.| |+|.++..+++.+ .+ .+|++++.++.-.+...+.++..+ .++.++.+|+.+
T Consensus 2 ~~vlVtG-asg~iG~~la~~l~~~g-~~Vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~ 61 (263)
T PRK06181 2 KVVIITG-ASEGIGRALAVRLARAG-AQLVLAARNETRLASLAQELADHG-GEALVVPTDVSD 61 (263)
T ss_pred CEEEEec-CCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCC
Confidence 3566666 4455666555433 24 689999999877666555554433 368888999876
No 435
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=68.67 E-value=31 Score=28.91 Aligned_cols=59 Identities=14% Similarity=0.008 Sum_probs=38.8
Q ss_pred CcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHh-CCCCEEEEEccccc
Q 026219 126 PLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQEL-ALSNIHFLFANASV 186 (241)
Q Consensus 126 ~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~-~l~ni~~~~~D~~~ 186 (241)
.+||=.| |+|.++..+++.+ .+ .+|+.+|.++...+...+.++.. +..++.++.+|+.+
T Consensus 3 k~ilItG-~~~~IG~~la~~l~~~g-~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 64 (259)
T PRK12384 3 QVAVVIG-GGQTLGAFLCHGLAEEG-YRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATS 64 (259)
T ss_pred CEEEEEC-CCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCC
Confidence 4677788 4566666665544 24 68999999987665554444332 22358889999875
No 436
>PRK08643 acetoin reductase; Validated
Probab=68.46 E-value=30 Score=28.96 Aligned_cols=58 Identities=10% Similarity=-0.024 Sum_probs=39.5
Q ss_pred CcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccc
Q 026219 126 PLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV 186 (241)
Q Consensus 126 ~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~ 186 (241)
+++|=+| |+|.++..+++.+ .+ .+|+.++.+++..+.....+...+ .++.++.+|+.+
T Consensus 3 k~~lItG-as~giG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~ 62 (256)
T PRK08643 3 KVALVTG-AGQGIGFAIAKRLVEDG-FKVAIVDYNEETAQAAADKLSKDG-GKAIAVKADVSD 62 (256)
T ss_pred CEEEEEC-CCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcC-CeEEEEECCCCC
Confidence 4566667 4455666555544 24 689999999887777666655443 367889999976
No 437
>PRK08251 short chain dehydrogenase; Provisional
Probab=67.99 E-value=34 Score=28.42 Aligned_cols=59 Identities=8% Similarity=-0.078 Sum_probs=41.2
Q ss_pred CcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhC-CCCEEEEEccccc
Q 026219 126 PLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELA-LSNIHFLFANASV 186 (241)
Q Consensus 126 ~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~-l~ni~~~~~D~~~ 186 (241)
.++|=.| |+|.++..+++++ .+ .+|+.++.+++..+.....+.... -.++.++.+|+.+
T Consensus 3 k~vlItG-as~giG~~la~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 64 (248)
T PRK08251 3 QKILITG-ASSGLGAGMAREFAAKG-RDLALCARRTDRLEELKAELLARYPGIKVAVAALDVND 64 (248)
T ss_pred CEEEEEC-CCCHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCC
Confidence 5678778 5677777776654 23 689999999887776655544332 2368889999976
No 438
>PRK07677 short chain dehydrogenase; Provisional
Probab=67.86 E-value=32 Score=28.78 Aligned_cols=58 Identities=12% Similarity=0.156 Sum_probs=38.3
Q ss_pred CcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccc
Q 026219 126 PLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV 186 (241)
Q Consensus 126 ~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~ 186 (241)
.++|=.|++.| ++..+++.+ .+ .+|+.++.+++..+...+.++..+ .++.++.+|+.+
T Consensus 2 k~~lItG~s~g-iG~~ia~~l~~~G-~~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~ 61 (252)
T PRK07677 2 KVVIITGGSSG-MGKAMAKRFAEEG-ANVVITGRTKEKLEEAKLEIEQFP-GQVLTVQMDVRN 61 (252)
T ss_pred CEEEEeCCCCh-HHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEecCCC
Confidence 46777777554 444444332 24 689999999887776666555443 468889999875
No 439
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=67.71 E-value=57 Score=29.34 Aligned_cols=42 Identities=14% Similarity=0.063 Sum_probs=29.4
Q ss_pred CCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHH
Q 026219 125 LPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEF 167 (241)
Q Consensus 125 ~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~ 167 (241)
+.+||=.|+| .|..+..+++.... ..++++|.++...+.+++
T Consensus 177 g~~vlI~g~g~vg~~~~~~a~~~G~-~~vi~~~~~~~~~~~~~~ 219 (375)
T cd08282 177 GDTVAVFGAGPVGLMAAYSAILRGA-SRVYVVDHVPERLDLAES 219 (375)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHH
Confidence 4556657886 56777777776543 378899999887776643
No 440
>PRK06101 short chain dehydrogenase; Provisional
Probab=67.66 E-value=56 Score=27.18 Aligned_cols=53 Identities=13% Similarity=0.039 Sum_probs=34.1
Q ss_pred cEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccc
Q 026219 127 LMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV 186 (241)
Q Consensus 127 ~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~ 186 (241)
++|=.|+ +|.++..+++.+ .+ .+|+.++.+++..+...+ .+ .++.++.+|+.+
T Consensus 3 ~vlItGa-s~giG~~la~~L~~~G-~~V~~~~r~~~~~~~~~~----~~-~~~~~~~~D~~~ 57 (240)
T PRK06101 3 AVLITGA-TSGIGKQLALDYAKQG-WQVIACGRNQSVLDELHT----QS-ANIFTLAFDVTD 57 (240)
T ss_pred EEEEEcC-CcHHHHHHHHHHHhCC-CEEEEEECCHHHHHHHHH----hc-CCCeEEEeeCCC
Confidence 4555554 566666666554 24 689999999876544322 12 467888999976
No 441
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=67.64 E-value=34 Score=28.13 Aligned_cols=58 Identities=16% Similarity=0.072 Sum_probs=39.5
Q ss_pred CCcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccc
Q 026219 125 LPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV 186 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~ 186 (241)
+.+||=.|++ |.++..+++.+ .+ .+|++++.+++-.+...+..... .++.++.+|+.+
T Consensus 5 ~~~vlItGa~-g~iG~~~a~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dl~~ 64 (238)
T PRK05786 5 GKKVAIIGVS-EGLGYAVAYFALKEG-AQVCINSRNENKLKRMKKTLSKY--GNIHYVVGDVSS 64 (238)
T ss_pred CcEEEEECCC-chHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhc--CCeEEEECCCCC
Confidence 5678888875 55555555443 24 68999999988766554444332 368889999875
No 442
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=67.52 E-value=34 Score=30.14 Aligned_cols=89 Identities=24% Similarity=0.221 Sum_probs=47.7
Q ss_pred CcEEEEcCCc-c-HHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219 126 PLMVDIGSGS-G-RFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS 203 (241)
Q Consensus 126 ~~VLDIGCGt-G-~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~ 203 (241)
.+|.=||+|. | .++..+.+.... ..|+++|.+++.++.+++ .+.. .. ...+.. ... ...|+|+
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~-~~V~~~dr~~~~~~~a~~----~g~~-~~-~~~~~~----~~~----~~aDvVi 71 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLA-GEIVGADRSAETRARARE----LGLG-DR-VTTSAA----EAV----KGADLVI 71 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCC-cEEEEEECCHHHHHHHHh----CCCC-ce-ecCCHH----HHh----cCCCEEE
Confidence 4677788875 3 333334443222 379999999987766542 3321 11 111211 111 2357776
Q ss_pred EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
+.-|.... ..+++.+...+++|+.++
T Consensus 72 iavp~~~~-----------~~v~~~l~~~l~~~~iv~ 97 (307)
T PRK07502 72 LCVPVGAS-----------GAVAAEIAPHLKPGAIVT 97 (307)
T ss_pred ECCCHHHH-----------HHHHHHHHhhCCCCCEEE
Confidence 66554311 356677777778877553
No 443
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=67.40 E-value=35 Score=28.27 Aligned_cols=59 Identities=8% Similarity=0.040 Sum_probs=40.2
Q ss_pred CCcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccc
Q 026219 125 LPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV 186 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~ 186 (241)
+.++|=.|+ +|.++..+++++ .+ .+|+.++.+++..+...+.++..+ .++.++.+|+.+
T Consensus 3 ~~~ilItGa-s~~iG~~la~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~d~~~ 63 (250)
T TIGR03206 3 DKTAIVTGG-GGGIGGATCRRFAEEG-AKVAVFDLNREAAEKVAADIRAKG-GNAQAFACDITD 63 (250)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHCC-CEEEEecCCHHHHHHHHHHHHhcC-CcEEEEEcCCCC
Confidence 467787885 455665555543 23 589999999887766665554433 468899999875
No 444
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=67.35 E-value=31 Score=28.51 Aligned_cols=59 Identities=8% Similarity=-0.053 Sum_probs=39.5
Q ss_pred CCcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccc
Q 026219 125 LPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV 186 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~ 186 (241)
+.+||=.|+ +|..+..+++.+ .+ .+|++++.++.......+.++..+ .++.++.+|+.+
T Consensus 6 ~~~ilItGa-sg~iG~~l~~~l~~~g-~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~ 66 (251)
T PRK12826 6 GRVALVTGA-ARGIGRAIAVRLAADG-AEVIVVDICGDDAAATAELVEAAG-GKARARQVDVRD 66 (251)
T ss_pred CCEEEEcCC-CCcHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcC-CeEEEEECCCCC
Confidence 467887774 566666555543 24 579999999776665555554433 458899999876
No 445
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=67.23 E-value=53 Score=28.62 Aligned_cols=92 Identities=18% Similarity=0.179 Sum_probs=54.6
Q ss_pred CCcEEEEcC--CccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEE--ccccchHHhhccCCCCcEe
Q 026219 125 LPLMVDIGS--GSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLF--ANASVSFKQLVSSYPGPLM 200 (241)
Q Consensus 125 ~~~VLDIGC--GtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~--~D~~~~~~~~~~~~~~~~d 200 (241)
+.+||=.|+ +.|..+..+++...+ .+|+++..+++..+.+++ .|.+. ++. .+..+.+.. .....+|
T Consensus 149 g~~vlV~ga~g~vg~~~~~~ak~~~G-~~vi~~~~~~~~~~~l~~----~g~~~--~~~~~~~~~~~i~~---~~~~~vd 218 (336)
T TIGR02817 149 KRALLIIGGAGGVGSILIQLARQLTG-LTVIATASRPESQEWVLE----LGAHH--VIDHSKPLKAQLEK---LGLEAVS 218 (336)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHhCC-CEEEEEcCcHHHHHHHHH----cCCCE--EEECCCCHHHHHHH---hcCCCCC
Confidence 567776764 577888888887534 689999888877666532 35432 222 122111111 1234577
Q ss_pred EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
.|+-..... ..+....+.|+++|+++
T Consensus 219 ~vl~~~~~~--------------~~~~~~~~~l~~~G~~v 244 (336)
T TIGR02817 219 YVFSLTHTD--------------QHFKEIVELLAPQGRFA 244 (336)
T ss_pred EEEEcCCcH--------------HHHHHHHHHhccCCEEE
Confidence 665222121 56778888999999875
No 446
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=67.19 E-value=31 Score=30.39 Aligned_cols=88 Identities=16% Similarity=0.070 Sum_probs=52.7
Q ss_pred CcEEEEcCC--ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEE-ccccchHHhhccCCCCcEeEE
Q 026219 126 PLMVDIGSG--SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLF-ANASVSFKQLVSSYPGPLMLV 202 (241)
Q Consensus 126 ~~VLDIGCG--tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~-~D~~~~~~~~~~~~~~~~d~V 202 (241)
.+|+=+|.| -|.++..+.+.... ..++|.|.+...++.+.+ .|+. ... .|... . .....|+|
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~-v~i~g~d~~~~~~~~a~~----lgv~---d~~~~~~~~-----~--~~~~aD~V 68 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLV-VRIIGRDRSAATLKAALE----LGVI---DELTVAGLA-----E--AAAEADLV 68 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCe-EEEEeecCcHHHHHHHhh----cCcc---cccccchhh-----h--hcccCCEE
Confidence 457777776 34555556666555 678999999988777643 2321 111 11100 0 12345777
Q ss_pred EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEE
Q 026219 203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKV 239 (241)
Q Consensus 203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l 239 (241)
++.-|-... ..+++++...|++|-.+
T Consensus 69 ivavPi~~~-----------~~~l~~l~~~l~~g~iv 94 (279)
T COG0287 69 IVAVPIEAT-----------EEVLKELAPHLKKGAIV 94 (279)
T ss_pred EEeccHHHH-----------HHHHHHhcccCCCCCEE
Confidence 777664322 58888888888888665
No 447
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=67.05 E-value=26 Score=30.45 Aligned_cols=83 Identities=22% Similarity=0.193 Sum_probs=44.7
Q ss_pred EEEEcCCc--cHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEEe
Q 026219 128 MVDIGSGS--GRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSIL 205 (241)
Q Consensus 128 VLDIGCGt--G~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~ 205 (241)
|.=||+|. |.++..|.+. + .+|+++|.+++.++.+.+ .+. +.....+. + .. ...|+|++.
T Consensus 3 I~IIG~G~mG~sla~~L~~~--g-~~V~~~d~~~~~~~~a~~----~g~--~~~~~~~~----~-~~----~~aDlVila 64 (279)
T PRK07417 3 IGIVGLGLIGGSLGLDLRSL--G-HTVYGVSRRESTCERAIE----RGL--VDEASTDL----S-LL----KDCDLVILA 64 (279)
T ss_pred EEEEeecHHHHHHHHHHHHC--C-CEEEEEECCHHHHHHHHH----CCC--cccccCCH----h-Hh----cCCCEEEEc
Confidence 44467663 3444444443 3 479999999988777643 222 11111111 0 11 235777776
Q ss_pred CCCCchhhhhhhcccchHHHHHHHHhccccCCEE
Q 026219 206 CPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKV 239 (241)
Q Consensus 206 ~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l 239 (241)
.|.... .++++++...++++-.+
T Consensus 65 vp~~~~-----------~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 65 LPIGLL-----------LPPSEQLIPALPPEAIV 87 (279)
T ss_pred CCHHHH-----------HHHHHHHHHhCCCCcEE
Confidence 654311 35677777777766443
No 448
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=66.70 E-value=52 Score=27.98 Aligned_cols=41 Identities=15% Similarity=0.151 Sum_probs=30.8
Q ss_pred CCCcEEEEcC--CccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHH
Q 026219 124 TLPLMVDIGS--GSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAE 166 (241)
Q Consensus 124 ~~~~VLDIGC--GtG~~~~~la~~~p~~~~v~giDis~~~v~~a~ 166 (241)
++..||-.|| +.|..+..+++... ..+++++.+++..+.++
T Consensus 139 ~~~~vli~g~~~~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~~ 181 (323)
T cd08241 139 PGETVLVLGAAGGVGLAAVQLAKALG--ARVIAAASSEEKLALAR 181 (323)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHhC--CEEEEEeCCHHHHHHHH
Confidence 4678999998 36667777777653 57999999988777663
No 449
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=66.70 E-value=17 Score=32.71 Aligned_cols=45 Identities=20% Similarity=0.294 Sum_probs=33.6
Q ss_pred CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHH
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQE 171 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~ 171 (241)
.+.+|+-||+|--+.+-.|++ .|. +|..||+++..+..-+-++..
T Consensus 63 ~ghrivtigSGGcn~L~ylsr-~Pa--~id~VDlN~ahiAln~lklaA 107 (414)
T COG5379 63 IGHRIVTIGSGGCNMLAYLSR-APA--RIDVVDLNPAHIALNRLKLAA 107 (414)
T ss_pred CCcEEEEecCCcchHHHHhhc-CCc--eeEEEeCCHHHHHHHHHHHHH
Confidence 368899999995555555555 565 899999999988876665544
No 450
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=66.07 E-value=43 Score=28.35 Aligned_cols=78 Identities=15% Similarity=0.069 Sum_probs=45.3
Q ss_pred CCCcEEEEcCCcc-HHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccch------HHhhccC
Q 026219 124 TLPLMVDIGSGSG-RFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVS------FKQLVSS 194 (241)
Q Consensus 124 ~~~~VLDIGCGtG-~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~------~~~~~~~ 194 (241)
+++++|=.|.++| .++..+++++ .+ .+|+.++.+++..+..++..++. ..+.++.+|+.+. ++.....
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G-~~v~l~~r~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~ 85 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALG-AELAVTYLNDKARPYVEPLAEEL--DAPIFLPLDVREPGQLEAVFARIAEE 85 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcC-CEEEEEeCChhhHHHHHHHHHhh--ccceEEecCcCCHHHHHHHHHHHHHH
Confidence 3578999998763 6666666554 24 67888898865443333332222 2345778898753 2222221
Q ss_pred CCCcEeEEEEe
Q 026219 195 YPGPLMLVSIL 205 (241)
Q Consensus 195 ~~~~~d~V~~~ 205 (241)
+ +.+|.++.+
T Consensus 86 ~-g~ld~lv~n 95 (258)
T PRK07533 86 W-GRLDFLLHS 95 (258)
T ss_pred c-CCCCEEEEc
Confidence 1 567876654
No 451
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=65.77 E-value=85 Score=26.77 Aligned_cols=92 Identities=18% Similarity=0.181 Sum_probs=55.0
Q ss_pred CCCcEEEEcC--CccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeE
Q 026219 124 TLPLMVDIGS--GSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLML 201 (241)
Q Consensus 124 ~~~~VLDIGC--GtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~ 201 (241)
.+.+||=.|+ +.|..+..+++... ..+++++.+++..+.++ +.|.+.+ +. +-.+....+... ...+|.
T Consensus 142 ~g~~vlV~ga~g~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~~----~~g~~~~--~~-~~~~~~~~i~~~-~~~~d~ 211 (320)
T cd08243 142 PGDTLLIRGGTSSVGLAALKLAKALG--ATVTATTRSPERAALLK----ELGADEV--VI-DDGAIAEQLRAA-PGGFDK 211 (320)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHH----hcCCcEE--Ee-cCccHHHHHHHh-CCCceE
Confidence 4567777775 57888888888754 57999999988766653 2344322 21 111111112211 345776
Q ss_pred EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
++-... ...+++..+.|+++|+++
T Consensus 212 vl~~~~---------------~~~~~~~~~~l~~~g~~v 235 (320)
T cd08243 212 VLELVG---------------TATLKDSLRHLRPGGIVC 235 (320)
T ss_pred EEECCC---------------hHHHHHHHHHhccCCEEE
Confidence 653221 155777888999999875
No 452
>PRK08507 prephenate dehydrogenase; Validated
Probab=65.60 E-value=32 Score=29.80 Aligned_cols=83 Identities=16% Similarity=0.189 Sum_probs=43.9
Q ss_pred EEEEcCCc--cHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEEe
Q 026219 128 MVDIGSGS--GRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSIL 205 (241)
Q Consensus 128 VLDIGCGt--G~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~ 205 (241)
|.=||+|. |.++..+.+.... ..|+++|.+++.++.+++ .|.. .. ..+.. .. .. .|+|++.
T Consensus 3 I~iIG~G~mG~sla~~l~~~g~~-~~v~~~d~~~~~~~~~~~----~g~~--~~-~~~~~----~~----~~-aD~Vila 65 (275)
T PRK08507 3 IGIIGLGLMGGSLGLALKEKGLI-SKVYGYDHNELHLKKALE----LGLV--DE-IVSFE----EL----KK-CDVIFLA 65 (275)
T ss_pred EEEEccCHHHHHHHHHHHhcCCC-CEEEEEcCCHHHHHHHHH----CCCC--cc-cCCHH----HH----hc-CCEEEEe
Confidence 44567664 3344444443222 379999999987666532 3321 01 11211 11 12 5777777
Q ss_pred CCCCchhhhhhhcccchHHHHHHHHhccccCCEE
Q 026219 206 CPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKV 239 (241)
Q Consensus 206 ~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l 239 (241)
.|.... ..+++++.. +++|..+
T Consensus 66 vp~~~~-----------~~~~~~l~~-l~~~~iv 87 (275)
T PRK08507 66 IPVDAI-----------IEILPKLLD-IKENTTI 87 (275)
T ss_pred CcHHHH-----------HHHHHHHhc-cCCCCEE
Confidence 654321 366677777 7776544
No 453
>PRK06914 short chain dehydrogenase; Provisional
Probab=65.31 E-value=39 Score=28.72 Aligned_cols=61 Identities=11% Similarity=0.003 Sum_probs=38.9
Q ss_pred CCcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccch
Q 026219 125 LPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVS 187 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~ 187 (241)
+.++|=.|+ +|.++..+++.. .+ .+|++++.+++..+...+.....+. .++.++.+|+.+.
T Consensus 3 ~k~~lItGa-sg~iG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~ 66 (280)
T PRK06914 3 KKIAIVTGA-SSGFGLLTTLELAKKG-YLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQ 66 (280)
T ss_pred CCEEEEECC-CchHHHHHHHHHHhCC-CEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCH
Confidence 356777784 444455544432 24 6899999988776665554444333 3688999999763
No 454
>PRK10458 DNA cytosine methylase; Provisional
Probab=65.22 E-value=14 Score=35.19 Aligned_cols=58 Identities=10% Similarity=-0.054 Sum_probs=40.8
Q ss_pred CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccc
Q 026219 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV 186 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~ 186 (241)
.-+++|+-||.|.+..-+-+..- -.|.++|+++.+.+.-+.|.. ..++...+.+|+.+
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~--~~v~a~Eid~~A~~TY~~N~~--~~p~~~~~~~DI~~ 145 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGG--QCVFTSEWNKHAVRTYKANWY--CDPATHRFNEDIRD 145 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCC--EEEEEEechHHHHHHHHHHcC--CCCccceeccChhh
Confidence 45899999999999999877532 357899999988777655431 11234455567654
No 455
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=65.15 E-value=23 Score=30.88 Aligned_cols=40 Identities=20% Similarity=0.223 Sum_probs=25.8
Q ss_pred cEEEEcCCc-c-HHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHH
Q 026219 127 LMVDIGSGS-G-RFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWV 169 (241)
Q Consensus 127 ~VLDIGCGt-G-~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~ 169 (241)
+|.=||+|. | .++..+++. + .+|+.+|++++.++.+.++.
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~--G-~~V~~~d~~~~~~~~~~~~~ 44 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVS--G-FQTTLVDIKQEQLESAQQEI 44 (288)
T ss_pred EEEEECccHHHHHHHHHHHhC--C-CcEEEEeCCHHHHHHHHHHH
Confidence 455667752 2 233333433 3 47999999999999887654
No 456
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=65.11 E-value=61 Score=29.44 Aligned_cols=90 Identities=13% Similarity=0.138 Sum_probs=51.2
Q ss_pred CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHH-HHHHHHHHHHhCCCCEEEEE-ccccchHHhhccCCCCcEe
Q 026219 124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKL-VKRAEFWVQELALSNIHFLF-ANASVSFKQLVSSYPGPLM 200 (241)
Q Consensus 124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~-v~~a~~~~~~~~l~ni~~~~-~D~~~~~~~~~~~~~~~~d 200 (241)
.+.+||=.|+| .|..+..+++... .+++++|.+++. .+.+ ++.|.+. ++. .+. +.+.... +.+|
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~G--a~Vi~~~~~~~~~~~~a----~~lGa~~--~i~~~~~-~~v~~~~----~~~D 244 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFG--LRVTVISRSSEKEREAI----DRLGADS--FLVTTDS-QKMKEAV----GTMD 244 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcC--CeEEEEeCChHHhHHHH----HhCCCcE--EEcCcCH-HHHHHhh----CCCc
Confidence 36677778886 5667777788764 579999987653 3443 2345421 221 111 1111111 2367
Q ss_pred EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
.|+-....+ ..++...+.|++||+++
T Consensus 245 ~vid~~G~~--------------~~~~~~~~~l~~~G~iv 270 (375)
T PLN02178 245 FIIDTVSAE--------------HALLPLFSLLKVSGKLV 270 (375)
T ss_pred EEEECCCcH--------------HHHHHHHHhhcCCCEEE
Confidence 554322221 46777888999999886
No 457
>PRK07774 short chain dehydrogenase; Provisional
Probab=65.05 E-value=43 Score=27.77 Aligned_cols=60 Identities=10% Similarity=-0.019 Sum_probs=40.1
Q ss_pred CCcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccch
Q 026219 125 LPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVS 187 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~ 187 (241)
+.++|=.| |+|.++..+++.+ .+ .+|+.++.+++..+...+.++..+ .++.++.+|+.+.
T Consensus 6 ~k~vlItG-asg~iG~~la~~l~~~g-~~vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~ 67 (250)
T PRK07774 6 DKVAIVTG-AAGGIGQAYAEALAREG-ASVVVADINAEGAERVAKQIVADG-GTAIAVQVDVSDP 67 (250)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEcCCCCH
Confidence 46788777 5666666666644 24 689999999876655555444332 3577888998763
No 458
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=65.01 E-value=26 Score=32.76 Aligned_cols=38 Identities=21% Similarity=0.224 Sum_probs=27.2
Q ss_pred cEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHH
Q 026219 127 LMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAE 166 (241)
Q Consensus 127 ~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~ 166 (241)
+|-=| |.|..+..++..+....+|+|+|++++.++..+
T Consensus 8 kI~vI--GlGyvGlpmA~~la~~~~V~g~D~~~~~ve~l~ 45 (425)
T PRK15182 8 KIAII--GLGYVGLPLAVEFGKSRQVVGFDVNKKRILELK 45 (425)
T ss_pred eEEEE--CcCcchHHHHHHHhcCCEEEEEeCCHHHHHHHH
Confidence 34445 566677777766543268999999999888765
No 459
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=64.98 E-value=59 Score=28.53 Aligned_cols=95 Identities=14% Similarity=0.111 Sum_probs=51.6
Q ss_pred CCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhcc-CCCCcEeEE
Q 026219 125 LPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVS-SYPGPLMLV 202 (241)
Q Consensus 125 ~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~-~~~~~~d~V 202 (241)
+..||=.|+| .|..+..+++...- ..+++++.++...+.+++ .|.. .++..+-.+....+.. ..+..+|.+
T Consensus 169 g~~vlI~g~g~vg~~~~~lak~~G~-~~v~~~~~~~~~~~~~~~----~ga~--~v~~~~~~~~~~~i~~~~~~~~~d~i 241 (345)
T cd08287 169 GSTVVVVGDGAVGLCAVLAAKRLGA-ERIIAMSRHEDRQALARE----FGAT--DIVAERGEEAVARVRELTGGVGADAV 241 (345)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHH----cCCc--eEecCCcccHHHHHHHhcCCCCCCEE
Confidence 3444447876 56667777777643 359999998866555433 3432 2222211111111111 012346755
Q ss_pred EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
+-.... ...++.+.+.|+++|.++
T Consensus 242 l~~~g~--------------~~~~~~~~~~l~~~g~~v 265 (345)
T cd08287 242 LECVGT--------------QESMEQAIAIARPGGRVG 265 (345)
T ss_pred EECCCC--------------HHHHHHHHHhhccCCEEE
Confidence 432222 267888899999999875
No 460
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=64.75 E-value=52 Score=29.07 Aligned_cols=93 Identities=16% Similarity=0.103 Sum_probs=51.4
Q ss_pred CCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEcc---ccchHHhhccCCCCcEe
Q 026219 125 LPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFAN---ASVSFKQLVSSYPGPLM 200 (241)
Q Consensus 125 ~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D---~~~~~~~~~~~~~~~~d 200 (241)
+.+||=.|+| .|..+..+++.... ..++++|.+++..+.+.+ .+... ++..+ ..+.+.... ....+|
T Consensus 175 g~~vlI~g~g~vG~~~~~~a~~~G~-~~v~~~~~~~~~~~~~~~----~g~~~--v~~~~~~~~~~~~~~~~--~~~~vd 245 (350)
T cd08256 175 DDVVVLAGAGPLGLGMIGAARLKNP-KKLIVLDLKDERLALARK----FGADV--VLNPPEVDVVEKIKELT--GGYGCD 245 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC-cEEEEEcCCHHHHHHHHH----cCCcE--EecCCCcCHHHHHHHHh--CCCCCC
Confidence 3444446664 56666777877654 468899999877665533 34421 22211 111111211 123477
Q ss_pred EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
.++-....+ ..+..+.+.|+++|+++
T Consensus 246 vvld~~g~~--------------~~~~~~~~~l~~~G~~v 271 (350)
T cd08256 246 IYIEATGHP--------------SAVEQGLNMIRKLGRFV 271 (350)
T ss_pred EEEECCCCh--------------HHHHHHHHHhhcCCEEE
Confidence 654332212 45777888999999875
No 461
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=64.72 E-value=92 Score=27.13 Aligned_cols=86 Identities=14% Similarity=0.123 Sum_probs=47.3
Q ss_pred cCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccC-CCCcEeEEEEeCCCC
Q 026219 132 GSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSS-YPGPLMLVSILCPDP 209 (241)
Q Consensus 132 GCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~-~~~~~d~V~~~~~~~ 209 (241)
|+| .|..+..+++.. + .++++++.+++..+.+++ .|.+ .++..+-.+....+... ....+|.++-....
T Consensus 152 g~g~vG~~a~q~a~~~-G-~~vi~~~~~~~~~~~~~~----~g~~--~~i~~~~~~~~~~v~~~~~~~~~d~vid~~g~- 222 (324)
T cd08291 152 AASALGRMLVRLCKAD-G-IKVINIVRRKEQVDLLKK----IGAE--YVLNSSDPDFLEDLKELIAKLNATIFFDAVGG- 222 (324)
T ss_pred CccHHHHHHHHHHHHc-C-CEEEEEeCCHHHHHHHHH----cCCc--EEEECCCccHHHHHHHHhCCCCCcEEEECCCc-
Confidence 544 677777788765 4 579999999987777654 3432 23322211211111111 12346765532221
Q ss_pred chhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 210 HFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 210 ~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
..+....+.|++||+++
T Consensus 223 --------------~~~~~~~~~l~~~G~~v 239 (324)
T cd08291 223 --------------GLTGQILLAMPYGSTLY 239 (324)
T ss_pred --------------HHHHHHHHhhCCCCEEE
Confidence 23345677889999875
No 462
>PRK07062 short chain dehydrogenase; Provisional
Probab=64.68 E-value=40 Score=28.44 Aligned_cols=61 Identities=10% Similarity=-0.098 Sum_probs=40.6
Q ss_pred CCCcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccc
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASV 186 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~ 186 (241)
++.++|=.|++. .++..+++.+ .+ .+|+.++.+++-++.+.+.+.+... .++.++.+|+.+
T Consensus 7 ~~k~~lItGas~-giG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 70 (265)
T PRK07062 7 EGRVAVVTGGSS-GIGLATVELLLEAG-ASVAICGRDEERLASAEARLREKFPGARLLAARCDVLD 70 (265)
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCC
Confidence 356788888654 4444555443 24 6899999998877766655544321 357788899876
No 463
>PRK05993 short chain dehydrogenase; Provisional
Probab=64.66 E-value=44 Score=28.61 Aligned_cols=72 Identities=13% Similarity=0.004 Sum_probs=43.7
Q ss_pred CCcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccch------HHhhccCCC
Q 026219 125 LPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVS------FKQLVSSYP 196 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~------~~~~~~~~~ 196 (241)
+.++|=.|+ +|.++..+++.+ .+ .+|++++.+++.++... . .++.++.+|+.+. +........
T Consensus 4 ~k~vlItGa-sggiG~~la~~l~~~G-~~Vi~~~r~~~~~~~l~----~---~~~~~~~~Dl~d~~~~~~~~~~~~~~~~ 74 (277)
T PRK05993 4 KRSILITGC-SSGIGAYCARALQSDG-WRVFATCRKEEDVAALE----A---EGLEAFQLDYAEPESIAALVAQVLELSG 74 (277)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHH----H---CCceEEEccCCCHHHHHHHHHHHHHHcC
Confidence 356888886 466666665544 24 68999999987665432 1 2467888898763 111111122
Q ss_pred CcEeEEEEe
Q 026219 197 GPLMLVSIL 205 (241)
Q Consensus 197 ~~~d~V~~~ 205 (241)
+.+|.++.+
T Consensus 75 g~id~li~~ 83 (277)
T PRK05993 75 GRLDALFNN 83 (277)
T ss_pred CCccEEEEC
Confidence 467877654
No 464
>PRK09135 pteridine reductase; Provisional
Probab=64.64 E-value=44 Score=27.56 Aligned_cols=60 Identities=13% Similarity=-0.082 Sum_probs=38.1
Q ss_pred CCcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCC-HHHHHHHHHHHHHhCCCCEEEEEccccc
Q 026219 125 LPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIR-QKLVKRAEFWVQELALSNIHFLFANASV 186 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis-~~~v~~a~~~~~~~~l~ni~~~~~D~~~ 186 (241)
+.++|=.|+ +|.++..+++.+ .+ .+|++++.+ +...+.....++.....++.++.+|+.+
T Consensus 6 ~~~vlItGa-~g~iG~~l~~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~ 68 (249)
T PRK09135 6 AKVALITGG-ARRIGAAIARTLHAAG-YRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLD 68 (249)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCC-CEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCC
Confidence 467999995 566676666554 24 689999986 3333333333333222458889999876
No 465
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=64.63 E-value=41 Score=31.28 Aligned_cols=103 Identities=21% Similarity=0.234 Sum_probs=49.9
Q ss_pred cEEEEcCCccHHH--HHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhh-------ccCCCC
Q 026219 127 LMVDIGSGSGRFL--IWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQL-------VSSYPG 197 (241)
Q Consensus 127 ~VLDIGCGtG~~~--~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~-------~~~~~~ 197 (241)
+|.=||.|.-... ..|++. + .+|+|+|++++.++..++ +. +.+...+..+.+... ......
T Consensus 5 kI~VIGlG~~G~~~A~~La~~--G-~~V~~~D~~~~~v~~l~~-----g~--~~~~e~~l~~~l~~~~~~g~l~~~~~~~ 74 (415)
T PRK11064 5 TISVIGLGYIGLPTAAAFASR--Q-KQVIGVDINQHAVDTINR-----GE--IHIVEPDLDMVVKTAVEGGYLRATTTPE 74 (415)
T ss_pred EEEEECcchhhHHHHHHHHhC--C-CEEEEEeCCHHHHHHHHC-----CC--CCcCCCCHHHHHHHHhhcCceeeecccc
Confidence 4666777743332 233443 3 579999999998775321 21 111111211111000 000012
Q ss_pred cEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 198 PLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 198 ~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
..|.|++..|.|.-.+.. .........++.+.+.|++|-.++
T Consensus 75 ~aDvvii~vptp~~~~~~-~dl~~v~~~~~~i~~~l~~g~iVI 116 (415)
T PRK11064 75 PADAFLIAVPTPFKGDHE-PDLTYVEAAAKSIAPVLKKGDLVI 116 (415)
T ss_pred cCCEEEEEcCCCCCCCCC-cChHHHHHHHHHHHHhCCCCCEEE
Confidence 357788887765211100 000112356678888888876664
No 466
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=64.44 E-value=88 Score=27.22 Aligned_cols=93 Identities=12% Similarity=0.043 Sum_probs=52.0
Q ss_pred CcEEEEcCCccH--HHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHh-------CC----------CCEEEEEccccc
Q 026219 126 PLMVDIGSGSGR--FLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQEL-------AL----------SNIHFLFANASV 186 (241)
Q Consensus 126 ~~VLDIGCGtG~--~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~-------~l----------~ni~~~~~D~~~ 186 (241)
.+|.=||+|+=. ++..+++. + .+|+.+|.+++.++.+.++++++ +. .++.+. .|..
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~--G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~- 79 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALA--G-YDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-TDLE- 79 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHC--C-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CCHH-
Confidence 456667877433 22333333 4 57999999999988876544322 21 112221 1221
Q ss_pred hHHhhccCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 187 SFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 187 ~~~~~~~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
. . ...|+|+...++... +.+.+++.+...++|+..|+
T Consensus 80 ---~-~----~~aD~Vieavpe~~~---------~k~~~~~~l~~~~~~~~ii~ 116 (292)
T PRK07530 80 ---D-L----ADCDLVIEAATEDET---------VKRKIFAQLCPVLKPEAILA 116 (292)
T ss_pred ---H-h----cCCCEEEEcCcCCHH---------HHHHHHHHHHhhCCCCcEEE
Confidence 1 1 235777766665311 11377788888888877653
No 467
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.33 E-value=5.4 Score=32.40 Aligned_cols=19 Identities=26% Similarity=0.538 Sum_probs=16.7
Q ss_pred HHHHHHHHhccccCCEEEc
Q 026219 223 KPLVDSIIDYLMPGGKVYF 241 (241)
Q Consensus 223 ~~ll~~l~r~LkpGG~l~~ 241 (241)
..++++++|.|||||++-+
T Consensus 66 ~~alkechr~Lrp~G~Lri 84 (185)
T COG4627 66 TSALKECHRFLRPGGKLRI 84 (185)
T ss_pred HHHHHHHHHHhCcCcEEEE
Confidence 4899999999999999853
No 468
>PRK06194 hypothetical protein; Provisional
Probab=64.09 E-value=40 Score=28.76 Aligned_cols=59 Identities=15% Similarity=0.085 Sum_probs=38.5
Q ss_pred CCcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccc
Q 026219 125 LPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV 186 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~ 186 (241)
+.++|=.|. +|.++..+++++ .+ .+|+.+|.+++.++...+.+...+ .++.++.+|+.+
T Consensus 6 ~k~vlVtGa-sggIG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~d 66 (287)
T PRK06194 6 GKVAVITGA-ASGFGLAFARIGAALG-MKLVLADVQQDALDRAVAELRAQG-AEVLGVRTDVSD 66 (287)
T ss_pred CCEEEEeCC-ccHHHHHHHHHHHHCC-CEEEEEeCChHHHHHHHHHHHhcC-CeEEEEECCCCC
Confidence 456776664 455555555443 24 689999999877666555444333 357889999976
No 469
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=63.76 E-value=45 Score=27.96 Aligned_cols=60 Identities=10% Similarity=-0.015 Sum_probs=39.8
Q ss_pred CCcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccch
Q 026219 125 LPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVS 187 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~ 187 (241)
+.+||=+|++ |.++..+++.+ .+ .+++.++.+++.++.....++..+ .++.++.+|+.+.
T Consensus 11 ~k~vlVtG~s-~gIG~~la~~l~~~G-~~vv~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~ 72 (255)
T PRK06113 11 GKCAIITGAG-AGIGKEIAITFATAG-ASVVVSDINADAANHVVDEIQQLG-GQAFACRCDITSE 72 (255)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCH
Confidence 5789999954 54555544433 24 579999998887766655554433 3578888998763
No 470
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=63.49 E-value=40 Score=31.44 Aligned_cols=38 Identities=18% Similarity=0.075 Sum_probs=28.5
Q ss_pred CCCcEEEEcCCc-cHHHHHHHHHCCCCcEEEEEeCCHHHHH
Q 026219 124 TLPLMVDIGSGS-GRFLIWLARRNPDSGNYLGLEIRQKLVK 163 (241)
Q Consensus 124 ~~~~VLDIGCGt-G~~~~~la~~~p~~~~v~giDis~~~v~ 163 (241)
.+.+|+=+|+|. |......++.+ + .+|+++|.++....
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~-G-a~ViV~d~dp~r~~ 232 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGM-G-ARVIVTEVDPIRAL 232 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhC-c-CEEEEEeCChhhHH
Confidence 578999999994 66666666655 4 58999999986543
No 471
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=63.43 E-value=75 Score=27.64 Aligned_cols=42 Identities=12% Similarity=0.027 Sum_probs=27.8
Q ss_pred CcEEEEcCCccH--HHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHH
Q 026219 126 PLMVDIGSGSGR--FLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQ 170 (241)
Q Consensus 126 ~~VLDIGCGtG~--~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~ 170 (241)
.+|.=||+|+=. ++..+++. + .+|+.+|++++.++.++++++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~--G-~~V~l~d~~~~~l~~~~~~~~ 47 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH--G-FDVTIYDISDEALEKAKERIA 47 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc--C-CeEEEEeCCHHHHHHHHHHHH
Confidence 356677887432 22333333 4 579999999999988877643
No 472
>PRK06940 short chain dehydrogenase; Provisional
Probab=63.16 E-value=27 Score=30.04 Aligned_cols=77 Identities=19% Similarity=0.171 Sum_probs=46.4
Q ss_pred cEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccch--HHhhccC--CCCcEeEE
Q 026219 127 LMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVS--FKQLVSS--YPGPLMLV 202 (241)
Q Consensus 127 ~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~--~~~~~~~--~~~~~d~V 202 (241)
++|=.|+ |.++..+++.+....+|+.+|.+++.++...+.++..+ .++.++.+|+.+. +...+.. .-+.+|.+
T Consensus 4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~l 80 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG-FDVSTQEVDVSSRESVKALAATAQTLGPVTGL 80 (275)
T ss_pred EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC-CeEEEEEeecCCHHHHHHHHHHHHhcCCCCEE
Confidence 4554554 46777777766433789999999876665555554433 3678888998763 1111110 11457876
Q ss_pred EEeC
Q 026219 203 SILC 206 (241)
Q Consensus 203 ~~~~ 206 (241)
+.+-
T Consensus 81 i~nA 84 (275)
T PRK06940 81 VHTA 84 (275)
T ss_pred EECC
Confidence 6543
No 473
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=62.88 E-value=64 Score=28.53 Aligned_cols=40 Identities=15% Similarity=0.057 Sum_probs=27.8
Q ss_pred CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHH
Q 026219 124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRA 165 (241)
Q Consensus 124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a 165 (241)
.+.+++=||.| .|..+...++.. + .+|+.+|.++...+.+
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~-G-a~V~v~~r~~~~~~~~ 191 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKAL-G-ANVTVGARKSAHLARI 191 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHH
Confidence 47899999998 444444444544 4 6899999998765444
No 474
>PRK05599 hypothetical protein; Provisional
Probab=62.60 E-value=29 Score=29.22 Aligned_cols=78 Identities=14% Similarity=0.069 Sum_probs=48.3
Q ss_pred cEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccch------HHhhccCCCCcEe
Q 026219 127 LMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVS------FKQLVSSYPGPLM 200 (241)
Q Consensus 127 ~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~------~~~~~~~~~~~~d 200 (241)
++|=.|++.| ++..+++.+....+|+.++.+++.++...+.+++.+...+.++.+|+.+. ++.... .-+.+|
T Consensus 2 ~vlItGas~G-IG~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~-~~g~id 79 (246)
T PRK05599 2 SILILGGTSD-IAGEIATLLCHGEDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQE-LAGEIS 79 (246)
T ss_pred eEEEEeCccH-HHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHHH-hcCCCC
Confidence 3566676544 45555554432278999999988887776666655534578889998763 222221 125678
Q ss_pred EEEEeC
Q 026219 201 LVSILC 206 (241)
Q Consensus 201 ~V~~~~ 206 (241)
.++.+.
T Consensus 80 ~lv~na 85 (246)
T PRK05599 80 LAVVAF 85 (246)
T ss_pred EEEEec
Confidence 776554
No 475
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=62.05 E-value=47 Score=30.42 Aligned_cols=40 Identities=18% Similarity=0.112 Sum_probs=29.2
Q ss_pred CCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHH
Q 026219 125 LPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAE 166 (241)
Q Consensus 125 ~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~ 166 (241)
..+|+=||+| .|..+...++... .+|+.+|.+++..+.+.
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lG--a~V~v~d~~~~~~~~l~ 207 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLG--ATVTILDINIDRLRQLD 207 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCC--CeEEEEECCHHHHHHHH
Confidence 4568888888 6666677666653 47999999987665543
No 476
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=62.01 E-value=86 Score=27.53 Aligned_cols=92 Identities=14% Similarity=0.116 Sum_probs=53.7
Q ss_pred CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEc----cccchHHhhccCCCCc
Q 026219 124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFA----NASVSFKQLVSSYPGP 198 (241)
Q Consensus 124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~----D~~~~~~~~~~~~~~~ 198 (241)
++.+||=.|+| .|..+..+++.. + ..+++++.+++..+.+++ .|.. +++.. |..+.+.... ++.
T Consensus 165 ~~~~vlV~g~g~vg~~~~~~a~~~-G-~~vi~~~~~~~~~~~~~~----~g~~--~~i~~~~~~~~~~~~~~~~---~~~ 233 (345)
T cd08260 165 PGEWVAVHGCGGVGLSAVMIASAL-G-ARVIAVDIDDDKLELARE----LGAV--ATVNASEVEDVAAAVRDLT---GGG 233 (345)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-C-CeEEEEeCCHHHHHHHHH----hCCC--EEEccccchhHHHHHHHHh---CCC
Confidence 35667767764 566666777765 4 589999999887777632 3542 22211 2211121222 225
Q ss_pred EeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 199 LMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 199 ~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
+|.++-..... ..+....+.|+++|+++
T Consensus 234 ~d~vi~~~g~~--------------~~~~~~~~~l~~~g~~i 261 (345)
T cd08260 234 AHVSVDALGIP--------------ETCRNSVASLRKRGRHV 261 (345)
T ss_pred CCEEEEcCCCH--------------HHHHHHHHHhhcCCEEE
Confidence 77665332211 56777888999999875
No 477
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=61.91 E-value=23 Score=33.60 Aligned_cols=110 Identities=15% Similarity=0.032 Sum_probs=56.3
Q ss_pred CCcEEEEcCCccHHHHHHHHHCCC-CcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCC-CCcEeEE
Q 026219 125 LPLMVDIGSGSGRFLIWLARRNPD-SGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSY-PGPLMLV 202 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~p~-~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~-~~~~d~V 202 (241)
...+.|+|.|.|.-.-.+....++ .-.++.||.|..|........+. +-.+-..+.-.. -......+.. ...+|+|
T Consensus 201 pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~-~~~~g~~~v~~~-~~~r~~~pi~~~~~yDlv 278 (491)
T KOG2539|consen 201 PDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRD-GSHIGEPIVRKL-VFHRQRLPIDIKNGYDLV 278 (491)
T ss_pred hHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcC-hhhcCchhcccc-chhcccCCCCcccceeeE
Confidence 357888888866544433332222 13699999999999998887764 211222222221 1222223322 2458988
Q ss_pred EEeCCCCchhhhhhhcccchHHHHHHH-HhccccCCEEEc
Q 026219 203 SILCPDPHFKKKHHKRRVVQKPLVDSI-IDYLMPGGKVYF 241 (241)
Q Consensus 203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l-~r~LkpGG~l~~ 241 (241)
++.+...... ....| ....+++ .+..++||.+++
T Consensus 279 i~ah~l~~~~-s~~~R----~~v~~s~~r~~~r~g~~lVi 313 (491)
T KOG2539|consen 279 ICAHKLHELG-SKFSR----LDVPESLWRKTDRSGYFLVI 313 (491)
T ss_pred EeeeeeeccC-Cchhh----hhhhHHHHHhccCCCceEEE
Confidence 7665331111 11111 1333333 445577776653
No 478
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=61.80 E-value=80 Score=29.16 Aligned_cols=92 Identities=12% Similarity=0.131 Sum_probs=59.4
Q ss_pred CcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC--CEEEEEccccchHHhhccCCCCcEeEEE
Q 026219 126 PLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS--NIHFLFANASVSFKQLVSSYPGPLMLVS 203 (241)
Q Consensus 126 ~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~--ni~~~~~D~~~~~~~~~~~~~~~~d~V~ 203 (241)
..||=|+=..|.++..++...+. .+-=|--.-...++|++.++++ .++++.. .+ .++..+|.|+
T Consensus 46 ~~~~i~nd~fGal~~~l~~~~~~-----~~~ds~~~~~~~~~n~~~n~~~~~~~~~~~~--~~-------~~~~~~d~vl 111 (378)
T PRK15001 46 GPVLILNDAFGALSCALAEHKPY-----SIGDSYISELATRENLRLNGIDESSVKFLDS--TA-------DYPQQPGVVL 111 (378)
T ss_pred CCEEEEcCchhHHHHHHHhCCCC-----eeehHHHHHHHHHHHHHHcCCCcccceeecc--cc-------cccCCCCEEE
Confidence 37899999999999999964332 2212233334456677777764 3444422 21 1246689888
Q ss_pred EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
+..|-. . ...+..+..+.+.|.||+.++
T Consensus 112 ~~~PK~----~-----~~l~~~l~~l~~~l~~~~~ii 139 (378)
T PRK15001 112 IKVPKT----L-----ALLEQQLRALRKVVTSDTRII 139 (378)
T ss_pred EEeCCC----H-----HHHHHHHHHHHhhCCCCCEEE
Confidence 876542 1 133577888899999999976
No 479
>PRK07109 short chain dehydrogenase; Provisional
Probab=61.49 E-value=50 Score=29.42 Aligned_cols=59 Identities=12% Similarity=-0.016 Sum_probs=40.9
Q ss_pred CCcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccc
Q 026219 125 LPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV 186 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~ 186 (241)
+.+||=.|+ +|.++..+++.+ .+ .+|+.++.+++.++...+.++..+ .++.++.+|+.+
T Consensus 8 ~k~vlITGa-s~gIG~~la~~la~~G-~~Vvl~~R~~~~l~~~~~~l~~~g-~~~~~v~~Dv~d 68 (334)
T PRK07109 8 RQVVVITGA-SAGVGRATARAFARRG-AKVVLLARGEEGLEALAAEIRAAG-GEALAVVADVAD 68 (334)
T ss_pred CCEEEEECC-CCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHcC-CcEEEEEecCCC
Confidence 456777785 455555555443 24 689999999988777766666555 368888999876
No 480
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=61.43 E-value=1e+02 Score=26.84 Aligned_cols=95 Identities=13% Similarity=0.100 Sum_probs=53.9
Q ss_pred CCCcEEEEcCC-ccHHHHHHHHHCCCCcE-EEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccC-CCCcEe
Q 026219 124 TLPLMVDIGSG-SGRFLIWLARRNPDSGN-YLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSS-YPGPLM 200 (241)
Q Consensus 124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~-v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~-~~~~~d 200 (241)
++.+||=.|+| .|..+..+++... .+ +++++.+++..+.+++ .+.+ .++..+-.+....+... ....+|
T Consensus 165 ~g~~VlV~g~g~vg~~~~~la~~~g--~~~v~~~~~s~~~~~~~~~----~g~~--~~~~~~~~~~~~~i~~~~~~~~vd 236 (343)
T cd08235 165 PGDTVLVIGAGPIGLLHAMLAKASG--ARKVIVSDLNEFRLEFAKK----LGAD--YTIDAAEEDLVEKVRELTDGRGAD 236 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHH----hCCc--EEecCCccCHHHHHHHHhCCcCCC
Confidence 34566666876 6777777788754 45 8999999887776632 3432 22322211111111111 123477
Q ss_pred EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
.|+-.... ...+..+.+.|+++|+++
T Consensus 237 ~vld~~~~--------------~~~~~~~~~~l~~~g~~v 262 (343)
T cd08235 237 VVIVATGS--------------PEAQAQALELVRKGGRIL 262 (343)
T ss_pred EEEECCCC--------------hHHHHHHHHHhhcCCEEE
Confidence 66533221 156777888899999875
No 481
>PRK08324 short chain dehydrogenase; Validated
Probab=61.37 E-value=57 Score=32.31 Aligned_cols=58 Identities=9% Similarity=-0.038 Sum_probs=37.8
Q ss_pred CCcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccc
Q 026219 125 LPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV 186 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~ 186 (241)
+.++|=.|++ |.++..+++.+ .+ .+|+.+|.+++..+.+.+.+... .++.++.+|+.+
T Consensus 422 gk~vLVTGas-ggIG~~la~~L~~~G-a~Vvl~~r~~~~~~~~~~~l~~~--~~v~~v~~Dvtd 481 (681)
T PRK08324 422 GKVALVTGAA-GGIGKATAKRLAAEG-ACVVLADLDEEAAEAAAAELGGP--DRALGVACDVTD 481 (681)
T ss_pred CCEEEEecCC-CHHHHHHHHHHHHCc-CEEEEEeCCHHHHHHHHHHHhcc--CcEEEEEecCCC
Confidence 4678888753 44444444432 24 68999999998776655544322 468889999875
No 482
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=60.89 E-value=42 Score=28.27 Aligned_cols=56 Identities=13% Similarity=-0.019 Sum_probs=38.1
Q ss_pred cEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccc
Q 026219 127 LMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV 186 (241)
Q Consensus 127 ~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~ 186 (241)
++|=.|.+ |.++..+++++ .+ .+|+.++.+++.++.+.+.+++. .++.++.+|+.+
T Consensus 2 ~vlItGas-~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~Dv~d 59 (259)
T PRK08340 2 NVLVTASS-RGIGFNVARELLKKG-ARVVISSRNEENLEKALKELKEY--GEVYAVKADLSD 59 (259)
T ss_pred eEEEEcCC-cHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhc--CCceEEEcCCCC
Confidence 35666754 55555555544 24 68999999998877776666543 367888999875
No 483
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=60.75 E-value=97 Score=26.87 Aligned_cols=85 Identities=20% Similarity=0.181 Sum_probs=48.6
Q ss_pred CCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219 125 LPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS 203 (241)
Q Consensus 125 ~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~ 203 (241)
+.+||=.|+| .|..+..+++.. + .+++.++.+++..+.+++ .|.+ .++.. .+ . ....+|.++
T Consensus 168 ~~~vlV~g~g~vg~~~~~la~~~-g-~~v~~~~~~~~~~~~~~~----~g~~--~~~~~--~~-----~--~~~~vD~vi 230 (329)
T cd08298 168 GQRLGLYGFGASAHLALQIARYQ-G-AEVFAFTRSGEHQELARE----LGAD--WAGDS--DD-----L--PPEPLDAAI 230 (329)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC-C-CeEEEEcCChHHHHHHHH----hCCc--EEecc--Cc-----c--CCCcccEEE
Confidence 4555557765 344445566654 4 589999999876666532 3431 11111 11 0 123467554
Q ss_pred EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
..-+. ...++.+.+.|+++|+++
T Consensus 231 ~~~~~--------------~~~~~~~~~~l~~~G~~v 253 (329)
T cd08298 231 IFAPV--------------GALVPAALRAVKKGGRVV 253 (329)
T ss_pred EcCCc--------------HHHHHHHHHHhhcCCEEE
Confidence 32222 167888899999999876
No 484
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=60.74 E-value=98 Score=26.84 Aligned_cols=94 Identities=17% Similarity=0.183 Sum_probs=55.5
Q ss_pred CCcEEEEcC--CccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219 125 LPLMVDIGS--GSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV 202 (241)
Q Consensus 125 ~~~VLDIGC--GtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V 202 (241)
+.+|+=+|. +.|..+..+++.... .++++++.+++..+.+++ .+... ++... ......+.......+|.+
T Consensus 150 g~~vlV~g~~g~vg~~~~~~a~~~G~-~~v~~~~~~~~~~~~~~~----~g~~~--~~~~~-~~~~~~i~~~~~~~~d~v 221 (336)
T cd08252 150 GKTLLIIGGAGGVGSIAIQLAKQLTG-LTVIATASRPESIAWVKE----LGADH--VINHH-QDLAEQLEALGIEPVDYI 221 (336)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHcCC-cEEEEEcCChhhHHHHHh----cCCcE--EEeCC-ccHHHHHHhhCCCCCCEE
Confidence 567777774 577788888888763 589999999887777632 34321 22111 111111111112357765
Q ss_pred EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
+-....+ ..++.+.+.|+++|+++
T Consensus 222 l~~~~~~--------------~~~~~~~~~l~~~g~~v 245 (336)
T cd08252 222 FCLTDTD--------------QHWDAMAELIAPQGHIC 245 (336)
T ss_pred EEccCcH--------------HHHHHHHHHhcCCCEEE
Confidence 5332222 57778888999999875
No 485
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=60.38 E-value=51 Score=27.33 Aligned_cols=57 Identities=11% Similarity=0.089 Sum_probs=38.9
Q ss_pred cEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccc
Q 026219 127 LMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV 186 (241)
Q Consensus 127 ~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~ 186 (241)
++|=.| |+|.++..+++.+ .+ .+|++++.++...+......+..+ .++.++.+|+.+
T Consensus 3 ~vlItG-a~g~lG~~l~~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~ 61 (255)
T TIGR01963 3 TALVTG-AASGIGLAIALALAAAG-ANVVVNDLGEAGAEAAAKVATDAG-GSVIYLVADVTK 61 (255)
T ss_pred EEEEcC-CcchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcC-CceEEEECCCCC
Confidence 455566 5677777776654 24 589999999877666555444333 368889999876
No 486
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=60.24 E-value=47 Score=31.20 Aligned_cols=39 Identities=15% Similarity=0.049 Sum_probs=27.3
Q ss_pred CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHH
Q 026219 124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKR 164 (241)
Q Consensus 124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~ 164 (241)
.+.+|+=+|+| .|......++.+ + .+|+.+|+++.....
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~-G-a~ViV~d~dp~ra~~ 250 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGL-G-ARVIVTEVDPICALQ 250 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-C-CEEEEEcCCchhhHH
Confidence 57889999998 344444445544 4 589999999875433
No 487
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=60.24 E-value=70 Score=27.81 Aligned_cols=94 Identities=14% Similarity=0.132 Sum_probs=46.8
Q ss_pred CCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeC--CHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeE
Q 026219 125 LPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEI--RQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLML 201 (241)
Q Consensus 125 ~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDi--s~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~ 201 (241)
+.+||=.|+| .|..+..+++... .+++.+.. +++..+.++ +.|...+.....|..+.+.... ....+|.
T Consensus 165 g~~vlI~g~g~~g~~~~~la~~~G--~~v~~~~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~l~~~~--~~~~vd~ 236 (306)
T cd08258 165 GDTVVVFGPGPIGLLAAQVAKLQG--ATVVVVGTEKDEVRLDVAK----ELGADAVNGGEEDLAELVNEIT--DGDGADV 236 (306)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC--CEEEEECCCCCHHHHHHHH----HhCCcccCCCcCCHHHHHHHHc--CCCCCCE
Confidence 3444445553 5666667777754 46766643 333333332 2344322111112211111111 1244776
Q ss_pred EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
++-.... ...++...+.|+++|+++
T Consensus 237 vld~~g~--------------~~~~~~~~~~l~~~G~~v 261 (306)
T cd08258 237 VIECSGA--------------VPALEQALELLRKGGRIV 261 (306)
T ss_pred EEECCCC--------------hHHHHHHHHHhhcCCEEE
Confidence 5433221 267778889999999886
No 488
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=60.06 E-value=52 Score=27.47 Aligned_cols=59 Identities=7% Similarity=-0.123 Sum_probs=39.5
Q ss_pred CCcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccc
Q 026219 125 LPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV 186 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~ 186 (241)
+.++|=.| |+|.++..+++.. .+ .+|+.++.+++..+.+.+.++..+ .++.++.+|+.+
T Consensus 7 ~~~vlItG-asg~iG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~ 67 (262)
T PRK13394 7 GKTAVVTG-AASGIGKEIALELARAG-AAVAIADLNQDGANAVADEINKAG-GKAIGVAMDVTN 67 (262)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHCC-CeEEEEeCChHHHHHHHHHHHhcC-ceEEEEECCCCC
Confidence 45677555 4455555555543 23 579999999987777666665444 357889999876
No 489
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=60.02 E-value=43 Score=27.92 Aligned_cols=71 Identities=15% Similarity=0.092 Sum_probs=41.5
Q ss_pred cCC-ccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccch------HHhhccCCCCcEeEE
Q 026219 132 GSG-SGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVS------FKQLVSSYPGPLMLV 202 (241)
Q Consensus 132 GCG-tG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~------~~~~~~~~~~~~d~V 202 (241)
|+| ++.++..+++.+ .+ .+|+.++.+++.++...+.+.+..- .+++.+|+.+. +......+.+.+|.+
T Consensus 1 g~~~s~GiG~aia~~l~~~G-a~V~~~~~~~~~~~~~~~~l~~~~~--~~~~~~D~~~~~~v~~~~~~~~~~~~g~iD~l 77 (241)
T PF13561_consen 1 GAGSSSGIGRAIARALAEEG-ANVILTDRNEEKLADALEELAKEYG--AEVIQCDLSDEESVEALFDEAVERFGGRIDIL 77 (241)
T ss_dssp STSSTSHHHHHHHHHHHHTT-EEEEEEESSHHHHHHHHHHHHHHTT--SEEEESCTTSHHHHHHHHHHHHHHHCSSESEE
T ss_pred CCCCCCChHHHHHHHHHHCC-CEEEEEeCChHHHHHHHHHHHHHcC--CceEeecCcchHHHHHHHHHHHhhcCCCeEEE
Confidence 455 445555555544 24 7899999999976554444444321 23699998652 222222223788977
Q ss_pred EEe
Q 026219 203 SIL 205 (241)
Q Consensus 203 ~~~ 205 (241)
+.+
T Consensus 78 V~~ 80 (241)
T PF13561_consen 78 VNN 80 (241)
T ss_dssp EEE
T ss_pred Eec
Confidence 654
No 490
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=60.02 E-value=49 Score=25.48 Aligned_cols=77 Identities=16% Similarity=0.080 Sum_probs=46.7
Q ss_pred cEEEEcCCccHHHHHHHHHC---CCCcEEEEEeCC--HHHHHHHHHHHHHhCCCCEEEEEccccch------HHhhccCC
Q 026219 127 LMVDIGSGSGRFLIWLARRN---PDSGNYLGLEIR--QKLVKRAEFWVQELALSNIHFLFANASVS------FKQLVSSY 195 (241)
Q Consensus 127 ~VLDIGCGtG~~~~~la~~~---p~~~~v~giDis--~~~v~~a~~~~~~~~l~ni~~~~~D~~~~------~~~~~~~~ 195 (241)
++|=+|+++| ++..+++.+ .. ..|+.+..+ .+..+...+.++..+ .++.++.+|+.+. ++... ..
T Consensus 2 ~~lItGa~~g-iG~~~a~~l~~~g~-~~v~~~~r~~~~~~~~~l~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~-~~ 77 (167)
T PF00106_consen 2 TVLITGASSG-IGRALARALARRGA-RVVILTSRSEDSEGAQELIQELKAPG-AKITFIECDLSDPESIRALIEEVI-KR 77 (167)
T ss_dssp EEEEETTTSH-HHHHHHHHHHHTTT-EEEEEEESSCHHHHHHHHHHHHHHTT-SEEEEEESETTSHHHHHHHHHHHH-HH
T ss_pred EEEEECCCCH-HHHHHHHHHHhcCc-eEEEEeeecccccccccccccccccc-cccccccccccccccccccccccc-cc
Confidence 3556676644 444444332 23 578999998 566666666666555 6899999998752 12221 12
Q ss_pred CCcEeEEEEeCC
Q 026219 196 PGPLMLVSILCP 207 (241)
Q Consensus 196 ~~~~d~V~~~~~ 207 (241)
.+.+|.++.+..
T Consensus 78 ~~~ld~li~~ag 89 (167)
T PF00106_consen 78 FGPLDILINNAG 89 (167)
T ss_dssp HSSESEEEEECS
T ss_pred cccccccccccc
Confidence 367898877653
No 491
>PRK07063 short chain dehydrogenase; Provisional
Probab=59.93 E-value=56 Score=27.42 Aligned_cols=60 Identities=12% Similarity=-0.005 Sum_probs=40.7
Q ss_pred CCcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhC-CCCEEEEEccccc
Q 026219 125 LPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELA-LSNIHFLFANASV 186 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~-l~ni~~~~~D~~~ 186 (241)
++++|=.|++ |.++..+++.+ .+ .+|+.++.+++..+...+.++..+ -.++.++.+|+.+
T Consensus 7 ~k~vlVtGas-~gIG~~~a~~l~~~G-~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~ 69 (260)
T PRK07063 7 GKVALVTGAA-QGIGAAIARAFAREG-AAVALADLDAALAERAAAAIARDVAGARVLAVPADVTD 69 (260)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCC
Confidence 5678888865 44455555443 24 689999999887777666665421 1368889999875
No 492
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=59.86 E-value=15 Score=29.96 Aligned_cols=60 Identities=12% Similarity=0.183 Sum_probs=39.7
Q ss_pred CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC---CCEEEEEccccc
Q 026219 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL---SNIHFLFANASV 186 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l---~ni~~~~~D~~~ 186 (241)
...|+.+|||-=.....+....++ ..++-+|. |++++.-++.+++.+. .+.+++.+|+.+
T Consensus 79 ~~qvV~LGaGlDTr~~Rl~~~~~~-~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~ 141 (183)
T PF04072_consen 79 ARQVVNLGAGLDTRAYRLDNPAGG-VRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRD 141 (183)
T ss_dssp ESEEEEET-TT--HHHHHHHTTTT-EEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTS
T ss_pred CcEEEEcCCCCCchHHHhhccccc-eEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccc
Confidence 348999999999999999887666 78888888 5566666666655421 245679999975
No 493
>PRK05875 short chain dehydrogenase; Provisional
Probab=58.53 E-value=62 Score=27.40 Aligned_cols=60 Identities=10% Similarity=-0.010 Sum_probs=38.8
Q ss_pred CCcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhC-CCCEEEEEccccc
Q 026219 125 LPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELA-LSNIHFLFANASV 186 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~-l~ni~~~~~D~~~ 186 (241)
+.++|=.|++ |.++..+++.+ .+ .+|++++.+++..+...+.+...+ ..++.++.+|+.+
T Consensus 7 ~k~vlItGas-g~IG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~ 69 (276)
T PRK05875 7 DRTYLVTGGG-SGIGKGVAAGLVAAG-AAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTD 69 (276)
T ss_pred CCEEEEECCC-cHHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCC
Confidence 5678888854 44555555543 24 689999998776655444443322 2468889999875
No 494
>PRK07890 short chain dehydrogenase; Provisional
Probab=58.05 E-value=73 Score=26.51 Aligned_cols=59 Identities=10% Similarity=-0.017 Sum_probs=39.4
Q ss_pred CCcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccc
Q 026219 125 LPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV 186 (241)
Q Consensus 125 ~~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~ 186 (241)
+.++|=.|+ +|.++..+++.+ .+ .+|+.++.+++-.+...+.++..+ .++.++.+|+.+
T Consensus 5 ~k~vlItGa-~~~IG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~ 65 (258)
T PRK07890 5 GKVVVVSGV-GPGLGRTLAVRAARAG-ADVVLAARTAERLDEVAAEIDDLG-RRALAVPTDITD 65 (258)
T ss_pred CCEEEEECC-CCcHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHhC-CceEEEecCCCC
Confidence 456776775 455555555443 24 689999999887666655554434 368889999875
No 495
>PRK12829 short chain dehydrogenase; Provisional
Probab=57.88 E-value=55 Score=27.33 Aligned_cols=58 Identities=5% Similarity=-0.050 Sum_probs=37.9
Q ss_pred CCCcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccc
Q 026219 124 TLPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV 186 (241)
Q Consensus 124 ~~~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~ 186 (241)
++.++|=+|++ |.++..++++. .+ .+|++++.+++..+...+... +. ++.++.+|+.+
T Consensus 10 ~~~~vlItGa~-g~iG~~~a~~L~~~g-~~V~~~~r~~~~~~~~~~~~~--~~-~~~~~~~D~~~ 69 (264)
T PRK12829 10 DGLRVLVTGGA-SGIGRAIAEAFAEAG-ARVHVCDVSEAALAATAARLP--GA-KVTATVADVAD 69 (264)
T ss_pred CCCEEEEeCCC-CcHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHh--cC-ceEEEEccCCC
Confidence 45789988875 55566555543 23 579999999876654433321 22 57888899875
No 496
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=57.61 E-value=3.6 Score=30.34 Aligned_cols=18 Identities=33% Similarity=0.466 Sum_probs=13.8
Q ss_pred EEEEcCCccHHHHHHHHH
Q 026219 128 MVDIGSGSGRFLIWLARR 145 (241)
Q Consensus 128 VLDIGCGtG~~~~~la~~ 145 (241)
-+|||||.|...-..-+.
T Consensus 6 NIDIGcG~GNTmda~fRs 23 (124)
T PF07101_consen 6 NIDIGCGAGNTMDAAFRS 23 (124)
T ss_pred ccccccCCCcchhhhhhc
Confidence 469999999887665444
No 497
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=57.28 E-value=43 Score=27.84 Aligned_cols=58 Identities=7% Similarity=-0.025 Sum_probs=40.7
Q ss_pred CcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccc
Q 026219 126 PLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV 186 (241)
Q Consensus 126 ~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~ 186 (241)
.+||=.| |+|.++..+++++ .+ .+|++++.++...+.....++..+ .++.++.+|+.+
T Consensus 5 ~~vlItG-~sg~iG~~la~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~ 64 (258)
T PRK12429 5 KVALVTG-AASGIGLEIALALAKEG-AKVVIADLNDEAAAAAAEALQKAG-GKAIGVAMDVTD 64 (258)
T ss_pred CEEEEEC-CCchHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEcCCCC
Confidence 4566555 4677777777764 24 589999999887766655554433 468889999875
No 498
>PRK07024 short chain dehydrogenase; Provisional
Probab=56.69 E-value=43 Score=28.15 Aligned_cols=57 Identities=12% Similarity=0.007 Sum_probs=36.6
Q ss_pred CcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccc
Q 026219 126 PLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV 186 (241)
Q Consensus 126 ~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~ 186 (241)
.++|=.|+ +|.++..+++.+ .+ .+|+.+|.+++.++...+.+... .++.++.+|+.+
T Consensus 3 ~~vlItGa-s~gIG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dl~~ 61 (257)
T PRK07024 3 LKVFITGA-SSGIGQALAREYARQG-ATLGLVARRTDALQAFAARLPKA--ARVSVYAADVRD 61 (257)
T ss_pred CEEEEEcC-CcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHhcccC--CeeEEEEcCCCC
Confidence 35666775 555555555543 24 68999999987766544433221 268899999976
No 499
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=56.61 E-value=52 Score=25.91 Aligned_cols=92 Identities=13% Similarity=0.133 Sum_probs=50.5
Q ss_pred EEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhC-CC------CEEEEEccccchHHhhccCCCCcEe
Q 026219 128 MVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELA-LS------NIHFLFANASVSFKQLVSSYPGPLM 200 (241)
Q Consensus 128 VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~-l~------ni~~~~~D~~~~~~~~~~~~~~~~d 200 (241)
|.=||+|++..++...-...+ .+|+-...+++.++..++.-.... ++ ++.+ ..|..+ .. ..-|
T Consensus 2 I~ViGaG~~G~AlA~~la~~g-~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~----a~----~~ad 71 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNG-HEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEE----AL----EDAD 71 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCT-EEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHH----HH----TT-S
T ss_pred EEEECcCHHHHHHHHHHHHcC-CEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHH----Hh----Cccc
Confidence 455788877666543222223 479999999988877665432110 11 3332 344432 12 2236
Q ss_pred EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
.|++.-|... .+.+++++...|+++=.++
T Consensus 72 ~IiiavPs~~-----------~~~~~~~l~~~l~~~~~ii 100 (157)
T PF01210_consen 72 IIIIAVPSQA-----------HREVLEQLAPYLKKGQIII 100 (157)
T ss_dssp EEEE-S-GGG-----------HHHHHHHHTTTSHTT-EEE
T ss_pred EEEecccHHH-----------HHHHHHHHhhccCCCCEEE
Confidence 6666655432 1589999999997765554
No 500
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=56.31 E-value=1.2e+02 Score=26.52 Aligned_cols=95 Identities=19% Similarity=0.246 Sum_probs=55.0
Q ss_pred CCCcEEEEcCC--ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEc-cccchHHhhccCCCCcEe
Q 026219 124 TLPLMVDIGSG--SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFA-NASVSFKQLVSSYPGPLM 200 (241)
Q Consensus 124 ~~~~VLDIGCG--tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~-D~~~~~~~~~~~~~~~~d 200 (241)
++.+||=.|.| .|..+..+++... .+++.++.+++..+.++ ..+...+--... |..+.+.... ....+|
T Consensus 165 ~~~~vlV~g~~~~vg~~~~~~a~~~g--~~v~~~~~~~~~~~~~~----~~g~~~v~~~~~~~~~~~~~~~~--~~~~vd 236 (341)
T cd08297 165 PGDWVVISGAGGGLGHLGVQYAKAMG--LRVIAIDVGDEKLELAK----ELGADAFVDFKKSDDVEAVKELT--GGGGAH 236 (341)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHH----HcCCcEEEcCCCccHHHHHHHHh--cCCCCC
Confidence 35677777765 6788888888764 47999999987666553 234322111111 1111122221 124477
Q ss_pred EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219 201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240 (241)
Q Consensus 201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~ 240 (241)
.++-..... ..++...+.|+++|+++
T Consensus 237 ~vl~~~~~~--------------~~~~~~~~~l~~~g~~v 262 (341)
T cd08297 237 AVVVTAVSA--------------AAYEQALDYLRPGGTLV 262 (341)
T ss_pred EEEEcCCch--------------HHHHHHHHHhhcCCEEE
Confidence 665322222 66777889999999886
Done!