RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 026219
(241 letters)
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine,
phosphorylation, M7G, spout MT, tRNA processing; HET:
SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Length = 246
Score = 137 bits (348), Expect = 2e-40
Identities = 46/169 (27%), Positives = 65/169 (38%), Gaps = 23/169 (13%)
Query: 93 HARIRQHVNPLS-SSFTVPAP--IPDWSEVY---------KNPTLPLMVDIGSGSGRFLI 140
+ R R H NP S P DWS++Y + + DIG G G +I
Sbjct: 6 YYRQRAHSNPFSDHQLEYPVSPQDMDWSKLYPYYKNAENGQMTKKVTIADIGCGFGGLMI 65
Query: 141 WLARRNPDSGNYLGLEIRQKLVKRA--------EFWVQELALSNIHFLFANASVSFKQLV 192
L+ P+ LG+EIR ++ + NI+ L NA
Sbjct: 66 DLSPAFPED-LILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFF 124
Query: 193 SSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241
G L + PDPHFK++ HK R++ L+ L GG VY
Sbjct: 125 E--KGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYT 171
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1,
S-adenosyl-L-methionine, tRNA Pro structural genomics,
structural genomics consortium, SGC; HET: SAM; 1.55A
{Homo sapiens}
Length = 235
Score = 135 bits (341), Expect = 2e-39
Identities = 45/150 (30%), Positives = 62/150 (41%), Gaps = 11/150 (7%)
Query: 98 QHVNPLSSSFTVPAPIPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEI 157
+ PL+ + + P D E DIG G G L+ L+ PD+ LGLEI
Sbjct: 22 EFFAPLTQNQSHDDPK-DKKEKRAQ-AQVEFADIGCGYGGLLVELSPLFPDT-LILGLEI 78
Query: 158 RQKLVKRAEFWVQELA------LSNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHF 211
R K+ + ++ L NI L +NA G L + L PDPHF
Sbjct: 79 RVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFY--KGQLTKMFFLFPDPHF 136
Query: 212 KKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241
K+ HK R++ L+ L GG VY
Sbjct: 137 KRTKHKWRIISPTLLAEYAYVLRVGGLVYT 166
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold
methyltransferase, tRNA modification,
S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A
{Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Length = 218
Score = 110 bits (276), Expect = 7e-30
Identities = 34/136 (25%), Positives = 63/136 (46%), Gaps = 4/136 (2%)
Query: 106 SFTVPAPIPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRA 165
+ D+ ++ P+ ++IG G G L+ +A+ P+ ++LG+E+ V
Sbjct: 17 GVEFSEDMLDFPALFGREA-PVTLEIGFGMGASLVAMAKDRPEQ-DFLGIEVHSPGVGAC 74
Query: 166 EFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPL 225
E LSN+ + +A +++ L +V + PDP K +H+KRR+VQ P
Sbjct: 75 LASAHEEGLSNLRVMCHDAVEVLHKMIP--DNSLRMVQLFFPDPWHKARHNKRRIVQVPF 132
Query: 226 VDSIIDYLMPGGKVYF 241
+ + L GG +
Sbjct: 133 AELVKSKLQLGGVFHM 148
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis}
SCOP: c.66.1.53
Length = 213
Score = 104 bits (261), Expect = 1e-27
Identities = 35/127 (27%), Positives = 66/127 (51%), Gaps = 5/127 (3%)
Query: 115 DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL 174
W+ V+ N P+ +++G+G G+F+ +A++NPD NY+G+E+ + ++ A V++
Sbjct: 30 KWNTVFGNDN-PIHIEVGTGKGQFISGMAKQNPDI-NYIGIELFKSVIVTAVQKVKDSEA 87
Query: 175 SNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLM 234
N+ L +A PG + V + DP KK+H KRR+ + + +
Sbjct: 88 QNVKLLNIDADTLTDVFE---PGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMG 144
Query: 235 PGGKVYF 241
GG ++F
Sbjct: 145 KGGSIHF 151
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich,
S-adenosylmeth dependent, structural genomics, PSI;
2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Length = 214
Score = 103 bits (258), Expect = 3e-27
Identities = 39/133 (29%), Positives = 70/133 (52%), Gaps = 6/133 (4%)
Query: 110 PAPIP-DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFW 168
P W +++ N P+ V++GSG G F+ +A++NPD NY+G++I++ ++ A
Sbjct: 27 PLEAKAKWRDLFGNDN-PIHVEVGSGKGAFVSGMAKQNPDI-NYIGIDIQKSVLSYALDK 84
Query: 169 VQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDS 228
V E+ + NI L+ + S G + + + DP KK+H KRR+ K +D+
Sbjct: 85 VLEVGVPNIKLLWVDGSDLTDYFE---DGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDT 141
Query: 229 IIDYLMPGGKVYF 241
L G+++F
Sbjct: 142 FKRILPENGEIHF 154
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic
resistance, aminoglycoside, S-adenosyl-L-methionine;
HET: SAH; 1.69A {Streptomyces SP}
Length = 218
Score = 86.3 bits (213), Expect = 9e-21
Identities = 20/131 (15%), Positives = 47/131 (35%), Gaps = 15/131 (11%)
Query: 115 DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIR----QKLVKRAEFWVQ 170
++ ++ +++D+G+G G+ +AR+NP + L+ +K+ +A
Sbjct: 19 EFEQLRSQYD-DVVLDVGTGDGKHPYKVARQNPSR-LVVALDADKSRMEKISAKAAAKPA 76
Query: 171 ELALSNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSII 230
+ L N+ +L+A A P + + P + ++ +
Sbjct: 77 KGGLPNLLYLWATA--------ERLPPLSGVGELHVLMP-WGSLLRGVLGSSPEMLRGMA 127
Query: 231 DYLMPGGKVYF 241
PG
Sbjct: 128 AVCRPGASFLV 138
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH;
1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A*
3mte_A*
Length = 225
Score = 74.1 bits (181), Expect = 3e-16
Identities = 24/131 (18%), Positives = 49/131 (37%), Gaps = 13/131 (9%)
Query: 115 DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIR----QKLVKRAEFWVQ 170
+ +E+ + +D+G+G GR + LA + + Y+G++ + K+
Sbjct: 16 ELTEIIGQFD-RVHIDLGTGDGRNIYKLAINDQN-TFYIGIDPVKENLFDISKKIIKKPS 73
Query: 171 ELALSNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSII 230
+ LSN+ F+ A A + L +SIL P + ++ ++
Sbjct: 74 KGGLSNVVFVIAAA----ESLPFELKNIADSISILFPWG---TLLEYVIKPNRDILSNVA 126
Query: 231 DYLMPGGKVYF 241
D F
Sbjct: 127 DLAKKEAHFEF 137
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine,
structural genomics structure initiative, PSI; HET: SAM;
2.20A {Clostridium thermocellum atcc 27405}
Length = 197
Score = 46.1 bits (109), Expect = 2e-06
Identities = 18/112 (16%), Positives = 38/112 (33%), Gaps = 4/112 (3%)
Query: 129 VDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQEL-ALSNIHFLFANASVS 187
VD G+G +LA ++G G +I+ K + + +L + + +
Sbjct: 27 VDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNM 86
Query: 188 FKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKV 239
K + ++ L P R + ++ L+ GG +
Sbjct: 87 DKYIDCPVKA---VMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGII 135
>3lpm_A Putative methyltransferase; structural genomics, protein structure
initiative, NEW YORK structural genomix research
consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Length = 259
Score = 43.6 bits (103), Expect = 2e-05
Identities = 23/124 (18%), Positives = 44/124 (35%), Gaps = 12/124 (9%)
Query: 128 MVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN---------IH 178
++D+ SG+G + L+ R +G+EI+++L A+ V L +
Sbjct: 53 IIDLCSGNGIIPLLLSTRTK--AKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKK 110
Query: 179 FLFANASVSFKQLVSSYP-GPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGG 237
+ + P S+ + HF+ H+ + + L GG
Sbjct: 111 ITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGG 170
Query: 238 KVYF 241
K F
Sbjct: 171 KANF 174
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative,
structural genomics, NEW YORK SGX research center for
structural genomics; 1.86A {Methanosarcina mazei}
Length = 276
Score = 43.7 bits (103), Expect = 2e-05
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 130 DIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANA 184
+ G G G + LA+ NPD ++I + +++A ++ + N+ FL AN
Sbjct: 43 EAGCGIGAQTVILAKNNPD-AEITSIDISPESLEKARENTEKNGIKNVKFLQANI 96
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; HET:
SAM; 2.72A {Aquifex aeolicus}
Length = 219
Score = 41.6 bits (98), Expect = 7e-05
Identities = 14/56 (25%), Positives = 33/56 (58%)
Query: 129 VDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANA 184
+D+G+G+G +L +L++ + G +++++++V A V +L L N+ L +
Sbjct: 42 LDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEE 97
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB:
2gh1_A
Length = 284
Score = 41.9 bits (98), Expect = 8e-05
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 130 DIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANA 184
D G G G + L P+ Y G++ + L+ A + L + FL +A
Sbjct: 28 DYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-DSEFLEGDA 81
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.1 bits (88), Expect = 0.002
Identities = 29/184 (15%), Positives = 53/184 (28%), Gaps = 57/184 (30%)
Query: 91 LGHARIRQHVNPLSSSFTVPAPI--------PDWSEVYKNPTLPLMVDIGSGS-----GR 137
L H + VP ++++ PT D + G+
Sbjct: 11 LSHGSLEH-------VLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGK 63
Query: 138 FLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFAN-------ASVSFKQ 190
FL +++ S ++ + EF L ++IH L A V K+
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLCLT--EFENCYLEGNDIHALAAKLLQENDTTLVKTKE 121
Query: 191 LVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKP----LVDSIID-----YLMPGG---- 237
L+ +Y + +R K L ++ + + GG
Sbjct: 122 LIKNY---------------ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNT 166
Query: 238 KVYF 241
YF
Sbjct: 167 DDYF 170
Score = 37.0 bits (85), Expect = 0.006
Identities = 32/165 (19%), Positives = 52/165 (31%), Gaps = 42/165 (25%)
Query: 14 QSAAGFAAFHRTAKALISKPSSTFLCRRRH-------HHRCLYRNTASAASAACNTS--- 63
QS G R AKA PS R +R L ++ ++
Sbjct: 384 QSLYGLNLTLRKAKA----PSGLDQSRIPFSERKLKFSNRFL------PVASPFHSHLLV 433
Query: 64 --KEIRSTDLVALEF----AELNLPVSNKITGELGHARIRQHVNPLSSS-----FTVPAP 112
++ + DLV ++ +PV + G +R +S +P
Sbjct: 434 PASDLINKDLVKNNVSFNAKDIQIPVYDTFDGS----DLRVLSGSISERIVDCIIRLPV- 488
Query: 113 IPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEI 157
W + ++D G G L L RN D G G+ +
Sbjct: 489 --KWETTTQFKAT-HILDFGPGGASGLGVLTHRNKD-G--TGVRV 527
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.09A
{Methanosarcina mazei}
Length = 234
Score = 37.1 bits (86), Expect = 0.002
Identities = 17/116 (14%), Positives = 47/116 (40%), Gaps = 23/116 (19%)
Query: 130 DIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANA-SVSF 188
D+G+G+G +L + P++ + +++ +K+++ A+ + + ++ A+ F
Sbjct: 50 DLGAGTGLLSAFLMEKYPEA-TFTLVDMSEKMLEIAKNRFRGNL--KVKYIEADYSKYDF 106
Query: 189 KQ---LVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241
++ +V S L + H + K+ + ++ L G
Sbjct: 107 EEKYDMVVSA---LSI--------HHLEDEDKKELYKR-----SYSILKESGIFIN 146
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH;
2.30A {Leptospira interrogans}
Length = 239
Score = 36.9 bits (86), Expect = 0.003
Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 1/84 (1%)
Query: 129 VDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IHFLFANASVS 187
++IG+ +G + A P+ G L ++ ++ A + +E L N I +A +
Sbjct: 65 IEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALET 124
Query: 188 FKQLVSSYPGPLMLVSILCPDPHF 211
+ L+ S P
Sbjct: 125 LQVLIDSKSAPSWASDFAFGPSSI 148
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein
structure initiative, PSI, center for eukaryotic
structural genomics; HET: MSE SAH T8N; 1.12A
{Saccharomyces cerevisiae}
Length = 299
Score = 36.9 bits (85), Expect = 0.003
Identities = 15/77 (19%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Query: 110 PAPIPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWV 169
P+ + Y + L+VD+G G G + +A+ +G ++ ++K AE
Sbjct: 22 PSDFYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIK 81
Query: 170 QEL--ALSNIHFLFANA 184
+ N+ F +++
Sbjct: 82 EGSPDTYKNVSFKISSS 98
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon
SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Length = 383
Score = 36.6 bits (84), Expect = 0.005
Identities = 24/122 (19%), Positives = 47/122 (38%), Gaps = 17/122 (13%)
Query: 129 VDIGSGSGRFLIWLARRNPDSGNYLGLEI--------RQKLVKRAEFWVQELALSNIHFL 180
+D+G G+GR + ++ + G +G+++ R+ + AE + + SN+ FL
Sbjct: 88 LDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFL 147
Query: 181 FANASVSFKQLVSSYP-GPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKV 239
P + +V C +K + + I L GG++
Sbjct: 148 KGFIENLATAEPEGVPDSSVDIVISNCVCNLS---TNKLALFK-----EIHRVLRDGGEL 199
Query: 240 YF 241
YF
Sbjct: 200 YF 201
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics,
midwest cente structural genomics, protein structure
initiative; 1.95A {Streptococcus thermophilus} PDB:
3lby_A*
Length = 185
Score = 35.6 bits (82), Expect = 0.006
Identities = 16/111 (14%), Positives = 38/111 (34%), Gaps = 6/111 (5%)
Query: 129 VDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSF 188
VD G+G +LA S +++++ + + + +L + N + +
Sbjct: 27 VDATMGNGNDTAFLAGL---SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHE-NL 82
Query: 189 KQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKV 239
V + P ++ ++ I+D L GG++
Sbjct: 83 DHYVREPIRAAIFNLGYLPSADKSVITKPHTTLE--AIEKILDRLEVGGRL 131
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted
transferase, predicted O-methyltransferase, PFAM
PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Length = 260
Score = 35.6 bits (82), Expect = 0.008
Identities = 17/130 (13%), Positives = 46/130 (35%), Gaps = 17/130 (13%)
Query: 128 MVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN----IHFLFAN 183
+ D+G+G+G + +A R + E Q++ + A ++ + I L A+
Sbjct: 40 IADLGAGAGAAGMAVAARLEKA-EVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEAD 98
Query: 184 ASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHK---------RRVVQKPL---VDSIID 231
++ K V + ++ P+ + + + + +
Sbjct: 99 VTLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASA 158
Query: 232 YLMPGGKVYF 241
++ GG++
Sbjct: 159 IMVSGGQLSL 168
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics,
tubercidin, structu genomics, structural genomics
consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB:
4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A*
3qow_A* 3qox_A* 4er3_A* 3sr4_A*
Length = 438
Score = 36.0 bits (82), Expect = 0.009
Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 129 VDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSF 188
VD+GSG G+ ++ +A + ++ G+E K AE +E + +A +
Sbjct: 178 VDLGSGVGQVVLQVAAA-TNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTL 236
Query: 189 KQ 190
++
Sbjct: 237 ER 238
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics,
midwest CENT structural genomics, protein structure
initiative; 1.80A {Streptococcus agalactiae}
Length = 230
Score = 34.9 bits (80), Expect = 0.014
Identities = 23/102 (22%), Positives = 40/102 (39%), Gaps = 9/102 (8%)
Query: 128 MVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IHFLFANASV 186
++D+GS I+L + E+ + A V E L++ I AN
Sbjct: 25 LLDVGSDHAYLPIFLLQMGYCDFAI-AGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLS 83
Query: 187 SFKQ------LVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQ 222
+F++ + G ++ IL D K +H K V+Q
Sbjct: 84 AFEEADNIDTITICGMGGRLIADILNNDID-KLQHVKTLVLQ 124
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Length = 305
Score = 35.1 bits (80), Expect = 0.015
Identities = 15/114 (13%), Positives = 33/114 (28%), Gaps = 12/114 (10%)
Query: 129 VDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IHFLFANASVS 187
+ G L+ L +G++ + + A AL+ I +A
Sbjct: 123 ASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAW-- 180
Query: 188 FKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241
+L L++ + + + ++ L PGG +
Sbjct: 181 --KL--DTREGYDLLTSNGLNIYEPDDARVTELYRR-----FWQALKPGGALVT 225
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET:
SAH; 3.10A {Arabidopsis thaliana}
Length = 950
Score = 34.8 bits (79), Expect = 0.021
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 129 VDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRA 165
VD G GSG L L +G++I K + RA
Sbjct: 726 VDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARA 762
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET:
PGE GOL; 2.00A {Clostridium acetobutylicum}
Length = 209
Score = 34.1 bits (78), Expect = 0.021
Identities = 10/55 (18%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 130 DIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANA 184
D G+G + + + G+EI +K+AE + +E ++ +
Sbjct: 29 DCGAGGDLPPLSIFVEDG--YKTYGIEISDLQLKKAENFSRENNF-KLNISKGDI 80
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like
methyltransferase fold; 2.00A {Streptococcus pneumoniae}
PDB: 3ku1_A*
Length = 225
Score = 34.1 bits (78), Expect = 0.023
Identities = 20/102 (19%), Positives = 38/102 (37%), Gaps = 9/102 (8%)
Query: 128 MVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IHFLFANASV 186
++D+GS I L R E+ + + A V+ L I AN
Sbjct: 19 LLDVGSDHAYLPIELVERGQIKSAI-AGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLA 77
Query: 187 SFKQ------LVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQ 222
+F++ + + G ++ IL K + +R ++Q
Sbjct: 78 AFEETDQVSVITIAGMGGRLIARILEEGLG-KLANVERLILQ 118
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase;
structural genomics, PSI-2, protein structure
initiative; 2.35A {Listeria monocytogenes str}
Length = 253
Score = 34.1 bits (78), Expect = 0.024
Identities = 9/56 (16%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Query: 129 VDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANA 184
+D+G G G I+ A LG+++ ++++ A+ ++ + +
Sbjct: 49 LDLGCGFGWHCIYAAEHGAKK--VLGIDLSERMLTEAK---RKTTSPVVCYEQKAI 99
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase;
NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Length = 243
Score = 34.0 bits (78), Expect = 0.030
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Query: 129 VDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANA 184
VD+G G G F W LGL++ +K++ RA + I + A+
Sbjct: 48 VDLGCGFGWFCRWAHEHGASY--VLGLDLSEKMLARAR---AAGPDTGITYERADL 98
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta
with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB:
3dul_A*
Length = 223
Score = 33.7 bits (78), Expect = 0.033
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 129 VDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IHFLFANASVS 187
++IG+ G IWLAR G + LE +K A ++ L++ + A S
Sbjct: 63 LEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDS 122
Query: 188 FKQLVSSYPGP 198
+Q+ + P
Sbjct: 123 LQQIENEKYEP 133
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics
consortium (SGC), methyltransferase, phosphoprotein,
S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Length = 292
Score = 33.8 bits (76), Expect = 0.034
Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 130 DIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANAS 185
D+G G + +A + S +GL+I +L+ A ++ +
Sbjct: 52 DLGCNVGHLTLSIACKWGPS-RMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLE 106
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.4 bits (78), Expect = 0.036
Identities = 17/116 (14%), Positives = 31/116 (26%), Gaps = 31/116 (26%)
Query: 137 RFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYP 196
L W + V++ +V+E+ N FL + +Q
Sbjct: 65 LRLFWTLLSKQEEM-----------VQK---FVEEVLRINYKFLMSPIKTEQRQPSMMTR 110
Query: 197 GPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYL-------------MPG-GK 238
+ L D K++ V + + L + G GK
Sbjct: 111 MYIEQRDRLYNDNQVFAKYN---VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK 163
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAM;
1.60A {Rhodopseudomonas palustris}
Length = 211
Score = 33.3 bits (76), Expect = 0.038
Identities = 18/112 (16%), Positives = 30/112 (26%), Gaps = 21/112 (18%)
Query: 130 DIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFK 189
++G G+G + D + +L A + L LF
Sbjct: 49 ELGCGAGYQAEAMLAAGFD---VDATDGSPELAAEAS---RRLGRPVRTMLFHQL----- 97
Query: 190 QLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241
+ +Y + H R ++ I L PGG Y
Sbjct: 98 DAIDAYDAVWAHACL----------LHVPRDELADVLKLIWRALKPGGLFYA 139
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH;
1.37A {Mesembryanthemum crystallinum}
Length = 237
Score = 33.4 bits (77), Expect = 0.047
Identities = 11/67 (16%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 129 VDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IHFLFANASVS 187
+++G +G L+ A PD G ++ ++ + ++++ + + I+F+ ++A ++
Sbjct: 75 IEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLA 134
Query: 188 FKQLVSS 194
L+
Sbjct: 135 LDNLLQG 141
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural
genomics, PSI-2, protein structure initiative; 1.50A
{Listeria monocytogenes str}
Length = 244
Score = 33.3 bits (76), Expect = 0.048
Identities = 17/102 (16%), Positives = 35/102 (34%), Gaps = 9/102 (8%)
Query: 128 MVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IHFLFANASV 186
+ DIGS + + S E+ + A+ V+ L+ I N
Sbjct: 25 IADIGSDHAYLPCFAVKNQTASFAI-AGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLA 83
Query: 187 SFKQ------LVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQ 222
++ +V + G ++ +IL K + ++Q
Sbjct: 84 VIEKKDAIDTIVIAGMGGTLIRTILEEGAA-KLAGVTKLILQ 124
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase;
structural genomics, joint center for structural
genomics; HET: MSE SAM; 1.15A {Methanococcus
maripaludis}
Length = 219
Score = 33.2 bits (76), Expect = 0.050
Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 130 DIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IHFLFANA 184
DIGSG G I LA+++ + L+ + + + A + + L++ I + +
Sbjct: 49 DIGSGPGALSIALAKQSD--FSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDV 102
>2avd_A Catechol-O-methyltransferase; structural genomics, structural
genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens}
SCOP: c.66.1.1
Length = 229
Score = 33.1 bits (76), Expect = 0.053
Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 129 VDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRA-EFWVQELALSNIHFLFANASVS 187
+D+G+ +G + LA P G + E+ + + W Q A I A +
Sbjct: 74 LDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALET 133
Query: 188 FKQLVS 193
+L++
Sbjct: 134 LDELLA 139
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP,
structural genomics, PSI, protein structure initiative;
2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB:
1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Length = 298
Score = 33.2 bits (75), Expect = 0.057
Identities = 20/113 (17%), Positives = 32/113 (28%), Gaps = 11/113 (9%)
Query: 130 DIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRA-EFWVQELALSNIHFLFANASVSF 188
D+G G G L+ R G Y G++I + + A + F ++
Sbjct: 70 DLGCGKGGDLLKYERAGI--GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRH 127
Query: 189 KQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241
L + S F + I +L PGG
Sbjct: 128 MDLGKEFDVISSQFSFHY---AFSTSESLDIAQRN-----IARHLRPGGYFIM 172
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural
genomics, SGC, structural genomics consortium; HET: SAH;
1.75A {Homo sapiens} SCOP: c.66.1.42
Length = 241
Score = 33.1 bits (75), Expect = 0.058
Identities = 9/62 (14%), Positives = 21/62 (33%), Gaps = 2/62 (3%)
Query: 123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFA 182
+D G+G GR L ++I + + +A+ ++ E ++
Sbjct: 78 TGTSCALDCGAGIGRITKRLLLPLFRE--VDMVDITEDFLVQAKTYLGEEGKRVRNYFCC 135
Query: 183 NA 184
Sbjct: 136 GL 137
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A
{Synechocystis SP}
Length = 232
Score = 33.0 bits (76), Expect = 0.062
Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
Query: 129 VDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IHFLFANASVS 187
++IG G + +A + P G + + A+ + Q+ ++ I A +
Sbjct: 77 LEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALAT 136
Query: 188 FKQLVSSYPGP 198
+QL P P
Sbjct: 137 LEQLTQGKPLP 147
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.90A {Escherichia coli} SCOP:
c.66.1.21
Length = 256
Score = 32.8 bits (75), Expect = 0.064
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 128 MVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IHFLFANA 184
++D+GSGSG L AR + +G G+++ +A+ +EL +S +HF+ +A
Sbjct: 40 ILDLGSGSGEMLCTWARDHGITG--TGIDMSSLFTAQAKRRAEELGVSERVHFIHNDA 95
>1yb2_A Hypothetical protein TA0852; structural genomics,
methyltransferase, thermoplasma acidoph midwest center
for structural genomics, MCSG; 2.01A {Thermoplasma
acidophilum} SCOP: c.66.1.13
Length = 275
Score = 32.8 bits (74), Expect = 0.067
Identities = 9/49 (18%), Positives = 20/49 (40%)
Query: 128 MVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN 176
++++G GSG ++ G +E + +K+A + E
Sbjct: 114 ILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIG 162
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance,
transferase; HET: SAH; 1.48A {Escherichia coli} PDB:
2xva_A* 4dq0_A* 2i6g_A*
Length = 199
Score = 32.4 bits (74), Expect = 0.067
Identities = 20/113 (17%), Positives = 36/113 (31%), Gaps = 17/113 (15%)
Query: 130 DIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANA-SVSF 188
D+G G+GR ++LA D + + E L N+H + +++F
Sbjct: 38 DLGCGNGRNSLYLAANGYDV---DAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF 94
Query: 189 KQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241
+ Y L V + L+ ++ PGG
Sbjct: 95 DR---QYDFILSTVVL----------MFLEAKTIPGLIANMQRCTKPGGYNLI 134
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure
initiative dependent methyltransferase; HET: SAI; 1.94A
{Leishmania major} SCOP: c.66.1.42
Length = 254
Score = 32.7 bits (74), Expect = 0.073
Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 6/72 (8%)
Query: 114 PDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELA 173
++ +D G+G GR L + + LE + +++ A+ +ELA
Sbjct: 83 RNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYAT--TDLLEPVKHMLEEAK---RELA 137
Query: 174 -LSNIHFLFANA 184
+ F+ A+
Sbjct: 138 GMPVGKFILASM 149
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI,
protein structure initiative, joint center for structu
genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Length = 277
Score = 32.7 bits (74), Expect = 0.081
Identities = 16/53 (30%), Positives = 23/53 (43%)
Query: 128 MVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFL 180
++D G GSG LAR SG E R++ K AE + + L +
Sbjct: 116 IIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTI 168
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent
methyltransfer structural genomics, PSI-2; HET: MSE;
1.90A {Burkholderia thailandensis}
Length = 352
Score = 32.7 bits (75), Expect = 0.084
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 114 PDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPD 148
SE+ ++D+ G G +L + RR+P
Sbjct: 169 DVVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQ 203
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI,
intermolecular contacts, R specificity, tetramer,
disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB:
3lga_A* 3lhd_C*
Length = 255
Score = 32.7 bits (74), Expect = 0.086
Identities = 13/52 (25%), Positives = 22/52 (42%)
Query: 129 VDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFL 180
V+ G GSG ++LA G + EIR+ K A ++ + +
Sbjct: 98 VEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTI 149
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM,
structural GEN consortium, SGC, transferase; HET: SAM;
2.50A {Homo sapiens} SCOP: c.66.1.13
Length = 336
Score = 32.5 bits (73), Expect = 0.10
Identities = 19/96 (19%), Positives = 37/96 (38%), Gaps = 8/96 (8%)
Query: 128 MVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRA----EFWVQELALSNIHFLFAN 183
+++ GSGSG ++L++ G + E+R+ A + W LS++ N
Sbjct: 109 VLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDN 168
Query: 184 ASVSFKQLVSSYPGPLML----VSILCPDPHFKKKH 215
K + + L V++ +PH
Sbjct: 169 VDFIHKDISGATEDIKSLTFDAVALDMLNPHVTLPV 204
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues,
protein repair, deamidation, post-translational
modification; HET: SAH; 1.80A {Thermotoga maritima}
SCOP: c.66.1.7 d.197.1.1
Length = 317
Score = 32.4 bits (74), Expect = 0.11
Identities = 13/57 (22%), Positives = 29/57 (50%), Gaps = 8/57 (14%)
Query: 130 DIGSGSGRFLIW----LARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFA 182
+IG G+G + ++R + G + +E +K+ + A+ V+ L + N+ F+
Sbjct: 81 EIGGGTG----YNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCG 133
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold,
protein-cofactor-substrate complex; HET: SAH FRE; 2.70A
{Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Length = 247
Score = 32.3 bits (74), Expect = 0.11
Identities = 12/66 (18%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 129 VDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IHFLFANASVS 187
++IG +G L+ A P+ G L ++I ++ + +++ + + I F A
Sbjct: 84 MEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPV 143
Query: 188 FKQLVS 193
+++
Sbjct: 144 LDEMIK 149
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint
center for structural genomics, JCSG; HET: SAH; 2.11A
{Anabaena variabilis atcc 29413}
Length = 245
Score = 31.9 bits (72), Expect = 0.12
Identities = 22/114 (19%), Positives = 43/114 (37%), Gaps = 14/114 (12%)
Query: 129 VDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV-S 187
+D G+G +L++ P +GL++ + ++ A +E +NI + + V
Sbjct: 61 IDFACGNGTQTKFLSQFFPR---VIGLDVSKSALEIAA---KENTAANISYRLLDGLVPE 114
Query: 188 FKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241
+ S G + F HH ++ L S+ L G +Y
Sbjct: 115 QAAQIHSEIGDANIYMRTG----F---HHIPVEKRELLGQSLRILLGKQGAMYL 161
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein
structure initiative; 2.46A {Archaeoglobus fulgidus}
Length = 240
Score = 31.8 bits (72), Expect = 0.12
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 130 DIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAE 166
DIG G G FL + +G++I + ++K E
Sbjct: 47 DIGCGRGEFLELCKEEGIE---SIGVDINEDMIKFCE 80
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.30A {Bacteroides thetaiotaomicron}
PDB: 3t0i_A* 3svz_A* 3sxj_A*
Length = 257
Score = 32.1 bits (73), Expect = 0.12
Identities = 9/56 (16%), Positives = 22/56 (39%), Gaps = 3/56 (5%)
Query: 130 DIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANA 184
DIG G+G ++LA G G+++ ++ + + + + +
Sbjct: 52 DIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNENAVKANCADRVKGITGSM 105
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250,
NESG, structural genomics, PSI-2; HET: SAM; 1.68A
{Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A*
3t7r_A* 3t7t_A*
Length = 267
Score = 32.2 bits (73), Expect = 0.13
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 3/56 (5%)
Query: 130 DIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IHFLFANA 184
DIG G+G + LA G GL+ + ++ L N + + +
Sbjct: 52 DIGCGTGGQTMVLAGHVT--GQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSM 105
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP:
c.66.1.41
Length = 260
Score = 32.1 bits (73), Expect = 0.13
Identities = 7/55 (12%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 130 DIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANA 184
D+ +G G A + ++ + ++K A +++ + ++ +A
Sbjct: 43 DVATGGGHVANAFAPF---VKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDA 94
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Length = 242
Score = 31.9 bits (73), Expect = 0.14
Identities = 12/66 (18%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 129 VDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IHFLFANASVS 187
+++G+ +G + ++ PD G + +I + K A + +E + I A +
Sbjct: 65 LELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDT 124
Query: 188 FKQLVS 193
L++
Sbjct: 125 LHSLLN 130
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold,
alpha/beta/alpha sandwich structure, STRU genomics,
NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Length = 215
Score = 31.7 bits (73), Expect = 0.15
Identities = 12/60 (20%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Query: 130 DIGSGSGRFLIW----LARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANAS 185
+IG+G G + A + G + +E +L ++AE +++L N+ + + +
Sbjct: 83 EIGTGCG----YHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGT 138
>1xxl_A YCGJ protein; structural genomics, protein structure initiative,
PSI, NEW YORK SGX research center for structural
genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP:
c.66.1.41 PDB: 2glu_A*
Length = 239
Score = 31.7 bits (72), Expect = 0.16
Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 130 DIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANA 184
DIG+G+G + + +G++ +++V+ A + QE + N+ F A
Sbjct: 27 DIGAGAGHTALAFSPY---VQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTA 78
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella
burnetii}
Length = 225
Score = 31.5 bits (72), Expect = 0.17
Identities = 14/66 (21%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 129 VDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IHFLFANASVS 187
+DIG+ +G I + P G + ++ +K A+ + ++ LS+ I + A +
Sbjct: 69 IDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDT 128
Query: 188 FKQLVS 193
+L+
Sbjct: 129 LAELIH 134
>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold,
ATPase, electron transfer, ATP/ADP binding; HET: ANP;
1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A
Length = 276
Score = 31.8 bits (72), Expect = 0.18
Identities = 12/60 (20%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Query: 131 IGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQ 190
+G+GRFL +A+ + +++ + L + E+++S+ +FA + V
Sbjct: 125 CAAGTGRFLDVMAKI-------IEVDVSE-LGSISMNSQNEVSISSTCTVFAESEVISHL 176
>1ve3_A Hypothetical protein PH0226; dimer, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function, NPPSFA; HET: SAM; 2.10A
{Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 227
Score = 31.4 bits (71), Expect = 0.20
Identities = 11/55 (20%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 130 DIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANA 184
D+ G G F L +G++I + ++++A + + N+ F+ +A
Sbjct: 44 DLACGVGGFSFLLEDYG---FEVVGVDISEDMIRKAREYAKSRES-NVEFIVGDA 94
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI,
tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Length = 258
Score = 31.6 bits (71), Expect = 0.20
Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 12/87 (13%)
Query: 128 MVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVS 187
+++ G+GSG ++LAR + G E R + +AE N+ + +V
Sbjct: 100 VLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAE--------RNVRAFWQVENVR 151
Query: 188 FKQLVSSY----PGPLMLVSILCPDPH 210
F V++ +P
Sbjct: 152 FHLGKLEEAELEEAAYDGVALDLMEPW 178
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine,
nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Length = 298
Score = 31.7 bits (71), Expect = 0.20
Identities = 8/57 (14%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Query: 130 DIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV 186
IG G L +EI + + + ++ L + ++ + + +V
Sbjct: 128 FIGGGPLPLTGILLSHVYG-MRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETV 183
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Length = 354
Score = 31.7 bits (72), Expect = 0.20
Identities = 17/103 (16%), Positives = 36/103 (34%), Gaps = 3/103 (2%)
Query: 83 VSNKITGELGHARIRQHVNPLSSSFTVPAPIPDWSEVYKNPTLPLMVDIGSGSGRFLIWL 142
+ ++T R + S + + + ++ + +D +GSG +
Sbjct: 165 LGVQLTERPLSRRFPKAALRGSLTPVLAQALLRLADARPGMRV---LDPFTGSGTIALEA 221
Query: 143 ARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANAS 185
A + ++ +K + A LS I FL A+A
Sbjct: 222 ASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADAR 264
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich,
structural genomics, PSI-2, protein structure
initiative; 2.21A {Corynebacterium diphtheriae}
Length = 178
Score = 30.9 bits (70), Expect = 0.26
Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 127 LMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV 186
+ DIG GSG I R P + EI ++ +R L +S+ + A
Sbjct: 28 TLWDIGGGSGSIAIEWLRSTPQ-TTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPR 86
Query: 187 SFKQL 191
+F +
Sbjct: 87 AFDDV 91
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.70A {Bacillus thuringiensis}
Length = 242
Score = 31.0 bits (70), Expect = 0.27
Identities = 9/55 (16%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
Query: 130 DIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANA 184
D+G G G L+R +G++I + ++++ + + ++ F+ +
Sbjct: 59 DVGCGDGYGTYKLSRTG---YKAVGVDISEVMIQKGK---ERGEGPDLSFIKGDL 107
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure
initiative, NEW research center for structural genomics,
nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Length = 233
Score = 30.7 bits (70), Expect = 0.29
Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 129 VDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IHFLFANASVS 187
++IG+ G I +A+ P+ + +E ++ + A V+ L L + I LF +A
Sbjct: 59 LEIGTAIGYSAIRMAQALPE-ATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQL 117
Query: 188 FKQLVSSYP 196
++L
Sbjct: 118 GEKLELYPL 126
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research; 2.33A {Bacteroides vulgatus}
Length = 363
Score = 30.8 bits (70), Expect = 0.32
Identities = 5/21 (23%), Positives = 12/21 (57%)
Query: 128 MVDIGSGSGRFLIWLARRNPD 148
++DIG +G++ + N +
Sbjct: 183 LLDIGGNTGKWATQCVQYNKE 203
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: a.2.5.1
Length = 133
Score = 29.9 bits (67), Expect = 0.35
Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 8/33 (24%)
Query: 102 PLSSSFTVPAPIPDWSEVYKNPTLPLMVDIGSG 134
P+ + + A + D SEV ++ +G+G
Sbjct: 55 PVGAGSFIKAELKDTSEV--------IMSVGAG 79
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117,
NESG, structural genomics, PSI-2, protein structure
initiative; 2.25A {Corynebacterium glutamicum}
Length = 221
Score = 30.4 bits (69), Expect = 0.36
Identities = 8/65 (12%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Query: 129 VDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRA-EFWVQ-ELALSNIHFLFANASV 186
+ I +G +++ D+ ++ + ++A + + + S + FL +
Sbjct: 61 IAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLD 120
Query: 187 SFKQL 191
+L
Sbjct: 121 VMSRL 125
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl
homocysteine, protein repair; HET: SAH; 1.50A {Homo
sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Length = 226
Score = 30.2 bits (69), Expect = 0.39
Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 13/63 (20%)
Query: 130 DIGSGSGRFLIW----LARRNPDSGNYLGLEIRQKLVKRA-----EFWVQELALSNIHFL 180
D+GSGSG AR +G +G++ ++LV + + L+ + +
Sbjct: 83 DVGSGSG----ILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLV 138
Query: 181 FAN 183
+
Sbjct: 139 VGD 141
>2r3s_A Uncharacterized protein; methyltransferase domain, structural
genomics, joint center structural genomics, JCSG,
protein structure initiative; HET: MSE; 2.15A {Nostoc
punctiforme}
Length = 335
Score = 30.8 bits (70), Expect = 0.39
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 128 MVDIGSGSGRFLIWLARRNPD 148
++DI + G F I +A+ NP+
Sbjct: 169 VLDISASHGLFGIAVAQHNPN 189
>2p7i_A Hypothetical protein; putative methyltransferase, structural
genomics, joint cente structural genomics, JCSG; 1.74A
{Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41
PDB: 2p7h_A
Length = 250
Score = 30.6 bits (69), Expect = 0.39
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
Query: 130 DIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAE 166
++GS G F L D +E ++ + A+
Sbjct: 48 ELGSFKGDFTSRLQEHFND---ITCVEASEEAISHAQ 81
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type
fold, S-adenosyl-L- methionine; HET: SAH; 1.80A
{Escherichia coli}
Length = 210
Score = 30.2 bits (69), Expect = 0.39
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 130 DIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANAS 185
+IG+GSG LA + +E + L +A ++ L L N+ +
Sbjct: 83 EIGTGSGYQTAILAHL---VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGW 135
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium; 1.88A {Klebsiella pneumoniae subsp}
Length = 248
Score = 30.3 bits (69), Expect = 0.41
Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 1/69 (1%)
Query: 129 VDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IHFLFANASVS 187
++IG+ G IW+AR P G L LE + A +Q + + A S
Sbjct: 68 LEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQS 127
Query: 188 FKQLVSSYP 196
+ L
Sbjct: 128 LESLGECPA 136
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural
genomics, protein structure initiative; HET: SAM; 1.98A
{Mycobacterium tuberculosis} SCOP: c.66.1.13
Length = 280
Score = 30.5 bits (68), Expect = 0.46
Identities = 10/39 (25%), Positives = 18/39 (46%)
Query: 128 MVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAE 166
+++ G+GSG + L R +G + E R + A
Sbjct: 103 VLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHAR 141
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A
{Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A*
3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Length = 266
Score = 30.1 bits (68), Expect = 0.53
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
Query: 130 DIGSGSGRFLIWLARRNPDSG-NYLGLEIRQKLVKRAEFWVQELALSN-IHFLFANA 184
DIGSG G +++ + G + G++I +V A + ++ +N I F +
Sbjct: 61 DIGSGLGGGCMYINEK---YGAHTHGIDICSNIVNMAN---ERVSGNNKIIFEANDI 111
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2,
protein structure initiative; 2.80A {Bacillus
thuringiensis serovarkonkukian}
Length = 220
Score = 29.8 bits (67), Expect = 0.54
Identities = 19/117 (16%), Positives = 32/117 (27%), Gaps = 29/117 (24%)
Query: 130 DIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANA----- 184
+ G G+G L G+E +++ A +E +
Sbjct: 51 EFGVGTGNLTNKLLLAG---RTVYGIEPSREMRMIA----KEKLPKEFSITEGDFLSFEV 103
Query: 185 SVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241
S +VS+Y HH + + L GGK+ F
Sbjct: 104 PTSIDTIVSTY----AF-------------HHLTDDEKNVAIAKYSQLLNKGGKIVF 143
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.56
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 7/35 (20%)
Query: 97 RQHVNPLSSSFTVPAPIPDWSEVYKNPTLPLMVDI 131
+Q + L +S + A D S P L + +
Sbjct: 19 KQALKKLQASLKLYA--DD-SA----PALAIKATM 46
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll,
BCHU, SAM, SAH, adenosylmethyonine,
S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium
tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Length = 359
Score = 30.1 bits (68), Expect = 0.60
Identities = 9/36 (25%), Positives = 15/36 (41%)
Query: 113 IPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPD 148
I E K + M+D+G G G + + P+
Sbjct: 179 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPE 214
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2,
protein structure initiative; 2.50A {Sulfolobus
solfataricus}
Length = 170
Score = 29.6 bits (67), Expect = 0.61
Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 129 VDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAE 166
VD G G+G + +L + ++I +K +
Sbjct: 22 VDYGCGNGFYCKYLLEF---ATKLYCIDINVIALKEVK 56
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural
genomics, protein structure initiative, PSI-2; 1.95A
{Galdieria sulphuraria} SCOP: c.66.1.18
Length = 297
Score = 29.8 bits (67), Expect = 0.62
Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 129 VDIGSGSGRFLIWLARRNPDSG-NYLGLEIRQKLVKRAEFWVQELALSN-IHFLFANA 184
+D+G+G G +L R+ G + L I KR E + + L++ I + +
Sbjct: 87 LDLGAGYGGAARFLVRK---FGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSF 141
>3cc8_A Putative methyltransferase; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS transferase; 1.64A {Bacillus cereus}
Length = 230
Score = 29.7 bits (67), Expect = 0.65
Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 3/37 (8%)
Query: 130 DIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAE 166
DIG SG + G+E + ++A+
Sbjct: 38 DIGCSSGALGAAIKENGTR---VSGIEAFPEAAEQAK 71
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural
genomics, joint center for structural genom JCSG; HET:
SAH; 2.10A {Pseudomonas putida KT2440}
Length = 227
Score = 29.8 bits (67), Expect = 0.73
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 129 VDIGSGSGRFLIWLARR 145
+D+G G G L LA R
Sbjct: 57 LDLGCGEGWLLRALADR 73
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum}
PDB: 3jwi_A
Length = 219
Score = 29.5 bits (66), Expect = 0.78
Identities = 9/37 (24%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 129 VDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRA 165
+D+G G G L L + G+++ +++RA
Sbjct: 34 IDLGCGEGNLLSLLLKDKSFE-QITGVDVSYSVLERA 69
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for
structural genomics, JCSG, protein structure initiative
transferase; 1.90A {Geobacter sulfurreducens pca}
Length = 210
Score = 29.1 bits (66), Expect = 0.87
Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 129 VDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IHFLFANA 184
V G G G W AR S + ++ + V+ A + + L + + +
Sbjct: 61 VVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDP 117
>1vlm_A SAM-dependent methyltransferase; possible histamine
methyltransferase, structural genomics, JCSG, protein
struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP:
c.66.1.41
Length = 219
Score = 29.0 bits (65), Expect = 0.99
Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 14/56 (25%)
Query: 129 VDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANA 184
V+IG G+GRF + L + +G+E +++ + A + L A
Sbjct: 52 VEIGVGTGRFAVPLKIK-------IGVEPSERMAEIAR-------KRGVFVLKGTA 93
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics
consortium (NESG), PSI-2, protein structure initiative,
unknown function; NMR {Synechocystis} PDB: 3mer_A
Length = 202
Score = 29.1 bits (65), Expect = 1.2
Identities = 22/112 (19%), Positives = 42/112 (37%), Gaps = 17/112 (15%)
Query: 130 DIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFK 189
+ G GR +LA + ++ + +A+ QE + I + +N + F
Sbjct: 35 CLAEGEGRNACFLASLGYEV---TAVDQSSVGLAKAKQLAQEKGV-KITTVQSNLA-DFD 89
Query: 190 QLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241
+ ++ G +VSI C P +++ L + L PGG
Sbjct: 90 IVADAWEG---IVSIFCHLPSS---------LRQQLYPKVYQGLKPGGVFIL 129
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase
binding, liver cytosol, transferase-transferase
inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus}
PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A*
2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A
1r74_A* 2azt_A*
Length = 293
Score = 29.2 bits (65), Expect = 1.2
Identities = 20/117 (17%), Positives = 37/117 (31%), Gaps = 11/117 (9%)
Query: 130 DIGSGSGRFLIWLARRNPDSGNY--LGLEIRQKLVKRA--EFWVQELALSNIHFLFANAS 185
D+ G+G I L G + ++ K++K A E W + + ++ A+
Sbjct: 63 DVACGTGVDSIMLVEE----G-FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEAN 117
Query: 186 VSFKQLVSSYPGPLMLVSILCPD-PHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241
V L H + + L +I + PGG +
Sbjct: 118 WLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLAL-KNIASMVRPGGLLVI 173
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation,
transferase transferase inhibitor complex; HET: SAH;
1.13A {Rattus norvegicus} PDB: 3nwe_A* 3oe5_A* 3ozr_A*
3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A*
1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A*
3s68_A* 2zlb_A 2zth_A* ...
Length = 221
Score = 28.8 bits (65), Expect = 1.2
Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 1/69 (1%)
Query: 128 MVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IHFLFANASV 186
++++G+ G + +AR L +EI + + L + + L +
Sbjct: 62 VLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQD 121
Query: 187 SFKQLVSSY 195
QL Y
Sbjct: 122 LIPQLKKKY 130
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann
methyltransferase, protein repair isomerization; HET:
SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB:
1jg2_A* 1jg3_A* 1jg4_A*
Length = 235
Score = 28.7 bits (65), Expect = 1.3
Identities = 11/59 (18%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Query: 130 DIGSGSG---RFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANAS 185
++G+GSG + + + + +E +LV+ A+ ++ + N+H + + S
Sbjct: 97 EVGTGSGWNAALISEIVK-----TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGS 150
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD
factor, fixation, symbiosis, alpha/beta structure; HET:
SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Length = 216
Score = 28.6 bits (64), Expect = 1.3
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Query: 130 DIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRA 165
+IG +G F LA +++ + + RA
Sbjct: 57 EIGCAAGAFTEKLAPH---CKRLTVIDVMPRAIGRA 89
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A
methyltransferase; protein repair, isoaspartyl
formation, P. falciparum; HET: SAH; 2.00A {Plasmodium
falciparum}
Length = 227
Score = 28.7 bits (65), Expect = 1.3
Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 9/63 (14%)
Query: 130 DIGSGSG----RFLIWLARRNPDSGNYLGLEIRQKLVKRA-----EFWVQELALSNIHFL 180
D+GSGSG I + + +GLE + LV + + L + N +
Sbjct: 86 DVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKII 145
Query: 181 FAN 183
N
Sbjct: 146 HKN 148
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide
antibiotics biosynthesis, structural genomics; 2.00A
{Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Length = 299
Score = 28.7 bits (64), Expect = 1.6
Identities = 3/16 (18%), Positives = 6/16 (37%)
Query: 130 DIGSGSGRFLIWLARR 145
++ +G GR
Sbjct: 88 ELAAGMGRLTFPFLDL 103
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A
{Lechevalieria aerocolonigenes}
Length = 273
Score = 28.6 bits (64), Expect = 1.6
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 129 VDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IHFLFANA 184
+D+G G G+ + LA G+ I + V +A L+N + F +A+A
Sbjct: 66 LDVGCGIGKPAVRLATARD--VRVTGISISRPQVNQANARATAAGLANRVTFSYADA 120
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold,
protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo
sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A*
2aox_A* 1jqe_A* 2aow_A*
Length = 292
Score = 28.5 bits (63), Expect = 1.7
Identities = 12/64 (18%), Positives = 26/64 (40%), Gaps = 6/64 (9%)
Query: 130 DIGSGSGRFLIWL-----ARRNPDSGNYLGLEIRQKLVKRAEFWVQELA-LSNIHFLFAN 183
IG G+G + + A+ N +E + + + + V + + L N+ F +
Sbjct: 58 SIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHK 117
Query: 184 ASVS 187
+ S
Sbjct: 118 ETSS 121
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin,
phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Length = 334
Score = 28.4 bits (64), Expect = 1.9
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 128 MVDIGSGSGRFLIWLARRNPD 148
VD+G GSG + + P
Sbjct: 171 FVDVGGGSGELTKAILQAEPS 191
>2b3t_A Protein methyltransferase HEMK; translation termination,
methylation, conformational changes; HET: SAH; 3.10A
{Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Length = 276
Score = 28.2 bits (64), Expect = 1.9
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 129 VDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFL 180
+D+G+G+G + LA PD + ++ V A+ Q LA+ NIH L
Sbjct: 114 LDLGTGTGAIALALASERPDC-EIIAVDRMPDAVSLAQRNAQHLAIKNIHIL 164
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline,
methyltransferase, polyketide, tailoring enzymes,
structural proteomics in E spine; HET: SAM; 2.10A
{Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12
PDB: 1r00_A* 1xds_A* 1xdu_A*
Length = 374
Score = 28.5 bits (64), Expect = 2.0
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 128 MVDIGSGSGRFLIWLARRNPD 148
++D+G G+G L +A R P
Sbjct: 186 VLDVGGGNGGMLAAIALRAPH 206
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase
domain, structural genomics; HET: NHE CIT; 2.00A
{Corynebacterium glutamicum atcc 13032}
Length = 195
Score = 28.2 bits (63), Expect = 2.1
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 130 DIGSGSGRFLIWLARR 145
D G G GR +L+++
Sbjct: 52 DAGCGQGRIGGYLSKQ 67
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB:
3jwj_A
Length = 217
Score = 28.3 bits (63), Expect = 2.1
Identities = 8/38 (21%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 129 VDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAE 166
+D+G G G L L + + G+++ + ++ A+
Sbjct: 34 IDLGCGQGNLLKILLKDSFFE-QITGVDVSYRSLEIAQ 70
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate,
tailoring enzyme, polyketide, S-adenosyl-L-homocystein;
HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP:
a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Length = 360
Score = 28.5 bits (64), Expect = 2.1
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 6/34 (17%)
Query: 115 DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPD 148
DW+ V + +D+G G G F +ARR P
Sbjct: 180 DWTNV---RHV---LDVGGGKGGFAAAIARRAPH 207
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH;
2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A*
3i5u_A* 3i64_A*
Length = 332
Score = 28.4 bits (64), Expect = 2.4
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 6/34 (17%)
Query: 115 DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPD 148
DW+ + + VD+G GSG L L + D
Sbjct: 166 DWAAL---GHV---VDVGGGSGGLLSALLTAHED 193
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold,
methyltransferase fold, SAM-dependent methyltransferase;
HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB:
3vc2_A*
Length = 312
Score = 28.3 bits (63), Expect = 2.5
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 5/59 (8%)
Query: 128 MVDIGSGSGRFLIWLARRNPDSG-NYLGLEIRQKLVKRAEFWVQELALSN-IHFLFANA 184
+VD G G G ++ RR G G+ + +EL + + + N
Sbjct: 121 LVDAGCGRGGSMVMAHRR---FGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNM 176
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S
rRNA, NESG, structural genomics, PSI, protein structure
initiative; HET: SAM; 2.80A {Escherichia coli} SCOP:
c.66.1.33
Length = 269
Score = 28.0 bits (62), Expect = 2.6
Identities = 18/102 (17%), Positives = 33/102 (32%), Gaps = 25/102 (24%)
Query: 129 VDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV-- 186
+DIG G G + A P+ GL++ + +K A + F A++
Sbjct: 90 LDIGCGEGYYTHAFADALPEI-TTFGLDVSKVAIKAA-----AKRYPQVTFCVASSHRLP 143
Query: 187 ----SFKQLVSSY-------------PGPLMLVSILCPDPHF 211
S ++ Y PG ++ + P
Sbjct: 144 FSDTSMDAIIRIYAPCKAEELARVVKPGGWVITATPGPRHLM 185
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase,
S-adenosylmethionine, structural GE NPPSFA; HET: SAM;
2.20A {Aquifex aeolicus}
Length = 248
Score = 28.0 bits (62), Expect = 2.7
Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 128 MVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN 176
+++ G+GSG L L+ +G E ++ K A+ +++ L
Sbjct: 95 VLEFGTGSGALLAVLSEV---AGEVWTFEAVEEFYKTAQKNLKKFNLGK 140
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans
agrobacterium tumefaciens, structural genomics, PSI-2;
HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Length = 259
Score = 27.9 bits (62), Expect = 3.1
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 6/56 (10%)
Query: 129 VDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANA 184
D+G G G L R G++ ++++A L N +F A+
Sbjct: 38 YDLGCGPGNSTELLTDRYGV-NVITGIDSDDDMLEKA-----ADRLPNTNFGKADL 87
>3ege_A Putative methyltransferase from antibiotic biosyn pathway;
YP_324569.1, putative methyltransferase from antibiotic
BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Length = 261
Score = 27.6 bits (61), Expect = 3.6
Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 9/56 (16%)
Query: 129 VDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANA 184
DIG+G+G + + LA + +E + ++A + + A
Sbjct: 39 ADIGAGTGGYSVALANQG---LFVYAVEPSIVMRQQAV------VHPQVEWFTGYA 85
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU
genomics, PSI-2, protein structure initiative; HET: SAH;
2.40A {Micromonospora echinospora}
Length = 348
Score = 27.6 bits (62), Expect = 3.8
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 128 MVDIGSGSGRFLIWLARRNPD 148
+ D+G G G FL+ + R +P
Sbjct: 188 VADVGGGRGGFLLTVLREHPG 208
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM,
structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus
thermophilus} PDB: 2yr0_A
Length = 263
Score = 27.6 bits (61), Expect = 3.8
Identities = 10/56 (17%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 129 VDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANA 184
+++G G+GR + L R Y+ L+ +++ + + + + A+A
Sbjct: 44 LELGVGTGRIALPLIAR---GYRYIALDADAAMLEVFRQKIAGVDR-KVQVVQADA 95
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, MCSG, midwest center for
structural genomics; 2.19A {Deinococcus radiodurans}
Length = 226
Score = 27.3 bits (60), Expect = 4.2
Identities = 6/36 (16%), Positives = 13/36 (36%), Gaps = 3/36 (8%)
Query: 130 DIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRA 165
+ G G G + + + + +L+K A
Sbjct: 54 EAGCGHGPDAARFGPQ---AARWAAYDFSPELLKLA 86
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine,
transferase; HET: MSE SAH; 1.91A {Streptomyces
lavendulae} PDB: 3gxo_A*
Length = 369
Score = 27.3 bits (61), Expect = 4.2
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 128 MVDIGSGSGRFLIWLARRNPD 148
VDIG G G + + P
Sbjct: 206 AVDIGGGRGSLMAAVLDAFPG 226
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics,
PSI-2, protein ST initiative; 1.95A {Haemophilus
influenzae}
Length = 286
Score = 27.2 bits (60), Expect = 4.3
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 130 DIGSGSGRFLIWLARRN 146
D+G G GR ++L+
Sbjct: 126 DLGCGQGRNSLYLSLLG 142
>2h00_A Methyltransferase 10 domain containing protein; structural
genomics, structural genomics consortium, SGC; HET: SAH;
2.00A {Homo sapiens} SCOP: c.66.1.54
Length = 254
Score = 27.4 bits (60), Expect = 4.4
Identities = 17/97 (17%), Positives = 32/97 (32%), Gaps = 3/97 (3%)
Query: 121 KNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IHF 179
TL +DIG+G+ L +L E+ A+ V++ LS+ I
Sbjct: 62 DKSTLRRGIDIGTGASCIYPLLGATLNGW-YFLATEVDDMCFNYAKKNVEQNNLSDLIKV 120
Query: 180 LFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHH 216
+ + ++ +C P F +
Sbjct: 121 VKVPQKTLLMDALKE-ESEIIYDFCMCNPPFFANQLE 156
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate,
antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A
{Streptomyces venezuelae}
Length = 239
Score = 27.0 bits (60), Expect = 4.8
Identities = 8/50 (16%), Positives = 14/50 (28%), Gaps = 14/50 (28%)
Query: 130 DIGSGSGRFLIWLARR---------NPDSGNYLGLEIRQKLVKRAEFWVQ 170
D+ G+G L + + D L +K + A
Sbjct: 46 DVACGTGTHLEHFTKEFGDTAGLELSEDM-----LTHARKRLPDATLHQG 90
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural
genomics, protein structure initiative, PSI; 2.50A
{Clostridium acetobutylicum} SCOP: c.66.1.43
Length = 246
Score = 27.0 bits (60), Expect = 5.1
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 130 DIGSGSGRFLIWLARR 145
D+ G+G L +
Sbjct: 43 DLACGTGNLTENLCPK 58
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural
genomics, beta barrel, rossmann fold, tetramer; HET:
SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP:
c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Length = 192
Score = 26.9 bits (60), Expect = 5.1
Identities = 24/121 (19%), Positives = 41/121 (33%), Gaps = 34/121 (28%)
Query: 127 LMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANAS 185
+ VD+G G+G + LA R ++ + + E +Q L N+ + +A
Sbjct: 36 VAVDVGCGTGGVTLELAGRVRRV---YAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDA- 91
Query: 186 VSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVV-------QKPLVDSIIDYLMPGGK 238
P L I D V + ++ I D L PGG+
Sbjct: 92 ------------PEALCKIPDID----------IAVVGGSGGELQEILRIIKDKLKPGGR 129
Query: 239 V 239
+
Sbjct: 130 I 130
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold,
structural genomics, riken structu genomics/proteomics
initiative; 1.27A {Methanocaldococcus jannaschii} PDB:
3a4t_A
Length = 274
Score = 27.2 bits (61), Expect = 5.2
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 208 DPHFKKKHHKRRV-VQKPLVDSIIDYLMPGGK-VY 240
+ + ++ K QK L+D ID L G+ VY
Sbjct: 175 NRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVY 209
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein
transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Length = 148
Score = 26.4 bits (58), Expect = 5.4
Identities = 10/61 (16%), Positives = 19/61 (31%), Gaps = 1/61 (1%)
Query: 157 IRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHH 216
+ K+ E AL+ + + F V+ + L+ +L P
Sbjct: 43 LAHKIQSPQE-KEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATG 101
Query: 217 K 217
K
Sbjct: 102 K 102
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET:
SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Length = 218
Score = 26.8 bits (59), Expect = 5.5
Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 7/55 (12%)
Query: 130 DIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANA 184
++ SG+G + L+ L+ +++ A L N+ F +
Sbjct: 52 ELASGTGYWTRHLSGLADR---VTALDGSAEMIAEA----GRHGLDNVEFRQQDL 99
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein;
ubiquinone/menaquinone biosynthesis
methyltransferase-relate protein; HET: SAI; 2.35A
{Thermotoga maritima} SCOP: c.66.1.41
Length = 260
Score = 26.7 bits (59), Expect = 6.0
Identities = 6/19 (31%), Positives = 13/19 (68%)
Query: 130 DIGSGSGRFLIWLARRNPD 148
D+G G+G++ ++L R +
Sbjct: 60 DLGGGTGKWSLFLQERGFE 78
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer
[decarboxylating]; alpha and beta protein (A/B) class;
HET: MES; 2.30A {Methanocaldococcus jannaschii}
Length = 183
Score = 26.4 bits (59), Expect = 6.6
Identities = 11/65 (16%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Query: 127 LMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV 186
++VD+G GSG + +A+R ++ ++ + + + + N + A
Sbjct: 38 VVVDVGCGSGGMTVEIAKRCK---FVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED 94
Query: 187 SFKQL 191
+L
Sbjct: 95 VLDKL 99
>2frx_A Hypothetical protein YEBU; rossmann-type
S-adenosylmethionine-dependent methyltransfera domain;
2.90A {Escherichia coli}
Length = 479
Score = 27.0 bits (60), Expect = 7.5
Identities = 13/39 (33%), Positives = 15/39 (38%), Gaps = 6/39 (15%)
Query: 208 DPHFKKKHHKRRV-----VQKPLVDSIIDYLMPGGK-VY 240
DP K Q+ L+DS L PGG VY
Sbjct: 206 DPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 244
>3bkx_A SAM-dependent methyltransferase; YP_807781.1,
cyclopropane-fatty-acyl-phospholipid synthase-L protein,
methyltransferase domain; 1.85A {Lactobacillus casei}
Length = 275
Score = 26.5 bits (58), Expect = 7.9
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 130 DIGSGSGRFLIWLARRNPDSGNYLGLEI 157
+IG G G LA + SG+ G++I
Sbjct: 49 EIGCGQGDLSAVLADQVGSSGHVTGIDI 76
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif,
transferase; 2.28A {Enterococcus faecium}
Length = 456
Score = 26.5 bits (59), Expect = 8.5
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 6/39 (15%)
Query: 208 DPHFKKKHHKRRV-----VQKPLVDSIIDYLMPGGK-VY 240
DP+ K+ + Q+ ++ S I L G+ +Y
Sbjct: 194 DPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIY 232
>3it4_B Arginine biosynthesis bifunctional protein ARGJ beta chain;
ornithine acetyltransferase, structural genomics; 1.70A
{Mycobacterium tuberculosis} PDB: 3it6_B
Length = 205
Score = 26.3 bits (59), Expect = 8.7
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 111 APIPDWSEVY-KNPTLPLMVDIGSGSGRFLIW 141
P EV + + + VD+G G G+ I
Sbjct: 157 VGAPGAREVDLSDADIDITVDLGVGDGQARIR 188
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding,
DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A
{Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Length = 263
Score = 26.4 bits (58), Expect = 8.9
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 130 DIGSGSGRFLIWLARR 145
D+ G+G L LA
Sbjct: 56 DVACGTGMHLRHLADS 71
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans;
methyltransferase, isomerization, protein repair,
S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila
melanogaster} SCOP: c.66.1.7
Length = 227
Score = 26.0 bits (58), Expect = 9.2
Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 10/64 (15%)
Query: 130 DIGSGSG---RFLIWLARRNPDSGNY--LGLEIRQKLVKRA-----EFWVQELALSNIHF 179
D+GSGSG + + +G+E + +LV+R+ L +
Sbjct: 90 DVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLI 149
Query: 180 LFAN 183
+ +
Sbjct: 150 VEGD 153
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAH;
2.00A {Corynebacterium glutamicum atcc 13032}
Length = 203
Score = 26.3 bits (58), Expect = 9.2
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 130 DIGSGSGRFLIWLARR 145
D+GSG+GR+ LA
Sbjct: 47 DVGSGTGRWTGHLASL 62
>2v4i_B Glutamate N-acetyltransferase 2 beta chain; cytoplasm, acyl enzyme,
NTN hydrolase, acyltransferase, ornithine acetyl
transferase; 2.2A {Streptomyces clavuligerus} PDB:
2vzk_D* 2yep_B* 2vzk_B* 2w4n_B* 2yep_F*
Length = 213
Score = 25.9 bits (58), Expect = 9.6
Identities = 4/25 (16%), Positives = 12/25 (48%)
Query: 117 SEVYKNPTLPLMVDIGSGSGRFLIW 141
+E + + + +D+ G F ++
Sbjct: 172 AEHLRGDEVVIGIDLAIADGAFTVY 196
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH
HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12
PDB: 1fpx_A* 2qyo_A*
Length = 352
Score = 26.3 bits (58), Expect = 9.9
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 128 MVDIGSGSGRFLIWLARRNPD 148
+VD+G G+G + P
Sbjct: 192 IVDVGGGTGTTAKIICETFPK 212
>2ljp_A Ribonuclease P protein component; rnasep, ribozyme, hydrolase; NMR
{Escherichia coli}
Length = 119
Score = 25.5 bits (56), Expect = 9.9
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 8/51 (15%)
Query: 115 DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRA 165
++ V++ P + L R N +GL + +K V+RA
Sbjct: 17 QFTFVFQQPQ--------RAGTPQITILGRLNSLGHPRIGLTVAKKNVRRA 59
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.136 0.423
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,852,898
Number of extensions: 220648
Number of successful extensions: 739
Number of sequences better than 10.0: 1
Number of HSP's gapped: 712
Number of HSP's successfully gapped: 142
Length of query: 241
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 150
Effective length of database: 4,160,982
Effective search space: 624147300
Effective search space used: 624147300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 56 (25.8 bits)