Query 026220
Match_columns 241
No_of_seqs 138 out of 1288
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 08:25:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026220.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026220hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 100.0 3.8E-46 1.3E-50 307.4 15.9 224 1-232 66-290 (303)
2 1okc_A ADP, ATP carrier protei 100.0 7.3E-44 2.5E-48 293.0 20.9 222 1-228 69-297 (297)
3 1okc_A ADP, ATP carrier protei 100.0 4.1E-38 1.4E-42 258.7 17.0 192 39-230 5-203 (297)
4 2lck_A Mitochondrial uncouplin 100.0 2.5E-37 8.7E-42 254.7 18.4 186 43-232 3-196 (303)
5 3tgu_G UQCRQ, mitochondrial ub 46.2 15 0.0005 23.1 2.5 42 194-235 32-73 (81)
6 1pp9_G Ubiquinol-cytochrome C 35.2 25 0.00084 22.1 2.3 42 194-235 32-73 (81)
7 1y9i_A Low temperature require 29.3 1.2E+02 0.004 22.1 5.3 47 13-59 110-160 (178)
8 3vjj_A P9-1; 3.00A {Rice black 28.2 42 0.0014 26.3 2.9 37 152-196 272-308 (368)
9 3cx5_H Cytochrome B-C1 complex 22.8 73 0.0025 20.5 2.9 38 194-231 42-79 (93)
10 3f2e_A SIRV coat protein; four 21.9 30 0.001 21.3 0.9 36 176-211 4-43 (100)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=3.8e-46 Score=307.38 Aligned_cols=224 Identities=26% Similarity=0.432 Sum_probs=200.5
Q ss_pred CCcccchhhhhhhhhHHHHHHHHHHHHHhhcccCCCCCCChHHHHHHHHHHHHHHHhhcccHHHHHHHHHhcCcCCCCCC
Q 026220 1 MYRGLSPTVLALLPNWAVYFTMYEQLKSFLCSEDKNHHLSVGANVIAAAVAGAATTIATNPLWVVKTRLQTQGMKAGVVP 80 (241)
Q Consensus 1 ly~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~P~d~ik~~~q~~~~~~~~~~ 80 (241)
||||+.+++++.++..+++|.+||.+++.+.+..+ ..+....+++|++||+++.++++|+|++|+|+|++........
T Consensus 66 lyrG~~~~l~~~~~~~~i~f~~ye~~k~~~~~~~~--~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~ 143 (303)
T 2lck_A 66 LYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSE--HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRR 143 (303)
T ss_dssp HHSSHHHHHHHHHHHHHHTTTHHHHHHHHHSCCCS--SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSS
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCC
Confidence 69999999999999999999999999998876422 3577789999999999999999999999999999865433456
Q ss_pred CCcHHHHHHHHHHhhChhhhccchhhhhhh-hhhhhhhHHhHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHHHHhhh
Q 026220 81 YRSTLSALSRIAQEEGIRGLYSGLVPALAG-ISHVAIQFPTYEKIKMHLADQGNTSMDKLSARDVAVASSVSKIFASTLT 159 (241)
Q Consensus 81 ~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~~ 159 (241)
|++.++++++++++||+++||||+.+++++ ++.++++|.+||.+++.+.+... .+.+....+++|++||+++++++
T Consensus 144 ~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~---~~~~~~~~~~~g~~ag~~~~~~~ 220 (303)
T 2lck_A 144 YQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANL---MTDDLPCHFTSAFGAGFCTTVIA 220 (303)
T ss_dssp CCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTS---CCSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccC---CCCchHHHHHHHHHHHHHHHHHc
Confidence 899999999999999999999999999997 77999999999999998765432 23466778999999999999999
Q ss_pred CcHHHHHHHHhhcCCCCCCccCcHHHHHHHHHHhcCccccccChhhhHhhhhhhhhHHHHHHHHHHHHhhhcC
Q 026220 160 YPHEVVRSRLQEQGHHSEKRYSGVVDCIKKVFQQEGLPGFYRGCATNLLRTTPAAVITFTSFEMIHRFLVSYF 232 (241)
Q Consensus 160 ~Pld~iktr~q~~~~~~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (241)
+|+|+||+|||.+.. ..|.++++|+++++++||++|||||+.++++|.+|..+++|.+||.+|+.+.+..
T Consensus 221 ~P~dvvktrlq~~~~---~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~~~ 290 (303)
T 2lck_A 221 SPVDVVKTRYMNSAL---GQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAAY 290 (303)
T ss_dssp HHHHHHHHHHTTCCS---SSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred CHHHHHHHHHHhccc---cccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999743 4689999999999999999999999999999999999999999999998876644
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=7.3e-44 Score=292.98 Aligned_cols=222 Identities=25% Similarity=0.438 Sum_probs=187.6
Q ss_pred CCcccchhhhhhhhhHHHHHHHHHHHHHhhcccCCCC-C--CChHHHHHHHHHHHHHHHhhcccHHHHHHHHHhcCcCC-
Q 026220 1 MYRGLSPTVLALLPNWAVYFTMYEQLKSFLCSEDKNH-H--LSVGANVIAAAVAGAATTIATNPLWVVKTRLQTQGMKA- 76 (241)
Q Consensus 1 ly~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~g~~a~~~~~~~~~P~d~ik~~~q~~~~~~- 76 (241)
||||+.+++++.++..+++|.+||.+++.+.+..+.. . .+....+++|++||+++.++++|+|++|+|+|++....
T Consensus 69 lyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~ 148 (297)
T 1okc_A 69 FWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGA 148 (297)
T ss_dssp GGTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSST
T ss_pred eecccHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCC
Confidence 7999999999999999999999999999543322111 1 13457899999999999999999999999999985322
Q ss_pred CCCCCCcHHHHHHHHHHhhChhhhccchhhhhhh-hhhhhhhHHhHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHHH
Q 026220 77 GVVPYRSTLSALSRIAQEEGIRGLYSGLVPALAG-ISHVAIQFPTYEKIKMHLADQGNTSMDKLSARDVAVASSVSKIFA 155 (241)
Q Consensus 77 ~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~ 155 (241)
....|++.++++++++++||+++||||+.+++++ ++.++++|.+||.+++.+.+.. +.+....+++|++||+++
T Consensus 149 ~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~-----~~~~~~~~~~g~~ag~~a 223 (297)
T 1okc_A 149 AQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPK-----NVHIIVSWMIAQTVTAVA 223 (297)
T ss_dssp TTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGG-----CSCHHHHHHHHHHHHHHH
T ss_pred cCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccCC-----CccHHHHHHHHHHHHHHH
Confidence 2346899999999999999999999999999997 6799999999999998664422 246677899999999999
Q ss_pred HhhhCcHHHHHHHHhhcCCC--CCCccCcHHHHHHHHHHhcCccccccChhhhHhhhhhhhhHHHHHHHHHHHHh
Q 026220 156 STLTYPHEVVRSRLQEQGHH--SEKRYSGVVDCIKKVFQQEGLPGFYRGCATNLLRTTPAAVITFTSFEMIHRFL 228 (241)
Q Consensus 156 ~~~~~Pld~iktr~q~~~~~--~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (241)
+++++|+|+||+|||++... ....|.++++|+++++++||++|||||+.++++|. +..+++|.+||.+|+.+
T Consensus 224 ~~~t~P~dvvktr~q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 224 GLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp HHHHHHHHHHHHHHHTTTTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC----
T ss_pred HHhcChHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccceeeehHHHHHHhhC
Confidence 99999999999999987532 23578999999999999999999999999999996 56889999999998753
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=4.1e-38 Score=258.72 Aligned_cols=192 Identities=21% Similarity=0.344 Sum_probs=164.4
Q ss_pred CChHHHHHHHHHHHHHHHhhcccHHHHHHHHHhcCcCC---CCCCCCcHHHHHHHHHHhhChhhhccchhhhhhh-hhhh
Q 026220 39 LSVGANVIAAAVAGAATTIATNPLWVVKTRLQTQGMKA---GVVPYRSTLSALSRIAQEEGIRGLYSGLVPALAG-ISHV 114 (241)
Q Consensus 39 ~~~~~~~~~g~~a~~~~~~~~~P~d~ik~~~q~~~~~~---~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~-~~~~ 114 (241)
.+.+..+++|++||+++.++++|+|++|+|+|++.... ....|++.++++++++++||+++||||+.+++++ ++.+
T Consensus 5 ~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~ 84 (297)
T 1okc_A 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQ 84 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHH
Confidence 35668899999999999999999999999999986421 2346899999999999999999999999999996 7799
Q ss_pred hhhHHhHHHHHHHHhhcCCCCCC-CCChHHHHHHHHHHHHHHHhhhCcHHHHHHHHhhcCCC--CCCccCcHHHHHHHHH
Q 026220 115 AIQFPTYEKIKMHLADQGNTSMD-KLSARDVAVASSVSKIFASTLTYPHEVVRSRLQEQGHH--SEKRYSGVVDCIKKVF 191 (241)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~ag~~~~~~~~Pld~iktr~q~~~~~--~~~~~~~~~~~~~~i~ 191 (241)
+++|.+||.+++.+.+..+.... .......+++|++||++++++++|+|+||+|+|++... ....|.++++++++++
T Consensus 85 ~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~ 164 (297)
T 1okc_A 85 ALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIF 164 (297)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHH
Confidence 99999999999865432221111 12345678999999999999999999999999997532 2457899999999999
Q ss_pred HhcCccccccChhhhHhhhhhhhhHHHHHHHHHHHHhhh
Q 026220 192 QQEGLPGFYRGCATNLLRTTPAAVITFTSFEMIHRFLVS 230 (241)
Q Consensus 192 ~~~G~~~ly~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (241)
++||++|||+|+.++++|.+|+++++|.+||.+|+.+.+
T Consensus 165 ~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~ 203 (297)
T 1okc_A 165 KSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPD 203 (297)
T ss_dssp HHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCG
T ss_pred HhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999997754
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=2.5e-37 Score=254.65 Aligned_cols=186 Identities=25% Similarity=0.456 Sum_probs=165.8
Q ss_pred HHHHHHHHHHHHHHhhcccHHHHHHHHHhcCcCC------CCCCCCcHHHHHHHHHHhhChhhhccchhhhhhh-hhhhh
Q 026220 43 ANVIAAAVAGAATTIATNPLWVVKTRLQTQGMKA------GVVPYRSTLSALSRIAQEEGIRGLYSGLVPALAG-ISHVA 115 (241)
Q Consensus 43 ~~~~~g~~a~~~~~~~~~P~d~ik~~~q~~~~~~------~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~-~~~~~ 115 (241)
..+++|++|++++.++++|+|++|+|+|++.... ...+|++.++++++++++||+++||||+.+++++ ++..+
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 82 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFAS 82 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHH
Confidence 4678999999999999999999999999986432 1346899999999999999999999999999996 77999
Q ss_pred hhHHhHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHHHHhhhCcHHHHHHHHhhcCCC-CCCccCcHHHHHHHHHHhc
Q 026220 116 IQFPTYEKIKMHLADQGNTSMDKLSARDVAVASSVSKIFASTLTYPHEVVRSRLQEQGHH-SEKRYSGVVDCIKKVFQQE 194 (241)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~~~Pld~iktr~q~~~~~-~~~~~~~~~~~~~~i~~~~ 194 (241)
++|.+||.+++.+.+..+ ..+....+++|++||+++.++++|+|+||+|+|++... ....|.+.++++++++++|
T Consensus 83 i~f~~ye~~k~~~~~~~~----~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~e 158 (303)
T 2lck_A 83 VRIGLYDSVKQFYTKGSE----HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREE 158 (303)
T ss_dssp HTTTHHHHHHHHHSCCCS----SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCc----CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhc
Confidence 999999999998865422 35778889999999999999999999999999998542 3457899999999999999
Q ss_pred CccccccChhhhHhhhhhhhhHHHHHHHHHHHHhhhcC
Q 026220 195 GLPGFYRGCATNLLRTTPAAVITFTSFEMIHRFLVSYF 232 (241)
Q Consensus 195 G~~~ly~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (241)
|++|||+|+.++++|.+|+.+++|.+||.+|+.+.+..
T Consensus 159 G~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~ 196 (303)
T 2lck_A 159 GIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKAN 196 (303)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred ChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999887643
No 5
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=46.22 E-value=15 Score=23.11 Aligned_cols=42 Identities=10% Similarity=0.258 Sum_probs=31.7
Q ss_pred cCccccccChhhhHhhhhhhhhHHHHHHHHHHHHhhhcCCCC
Q 026220 194 EGLPGFYRGCATNLLRTTPAAVITFTSFEMIHRFLVSYFPPD 235 (241)
Q Consensus 194 ~G~~~ly~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (241)
.|+...+|-+...++..+|...+...+|+..++.-......+
T Consensus 32 ~~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l~rKn 73 (81)
T 3tgu_G 32 DALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERLKRKN 73 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred hhhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 355666666777888899999999999998888776655433
No 6
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=35.19 E-value=25 Score=22.07 Aligned_cols=42 Identities=17% Similarity=0.267 Sum_probs=32.6
Q ss_pred cCccccccChhhhHhhhhhhhhHHHHHHHHHHHHhhhcCCCC
Q 026220 194 EGLPGFYRGCATNLLRTTPAAVITFTSFEMIHRFLVSYFPPD 235 (241)
Q Consensus 194 ~G~~~ly~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (241)
+|+...+|-+...++..+|...+...+|+..++.-......+
T Consensus 32 ~~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~e~~~rKn 73 (81)
T 1pp9_G 32 KGIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFEKSKRKN 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred hhhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHHHHHhCCC
Confidence 466667777778888899999999999999888776655443
No 7
>1y9i_A Low temperature requirement C protein; structural genomics, protein structure initiative, PSI; 1.80A {Listeria monocytogenes} SCOP: a.195.1.1
Probab=29.25 E-value=1.2e+02 Score=22.14 Aligned_cols=47 Identities=17% Similarity=0.110 Sum_probs=28.7
Q ss_pred hhhHHHHHHHHHHHHH----hhcccCCCCCCChHHHHHHHHHHHHHHHhhc
Q 026220 13 LPNWAVYFTMYEQLKS----FLCSEDKNHHLSVGANVIAAAVAGAATTIAT 59 (241)
Q Consensus 13 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~ 59 (241)
...+++.|..||..|- .+..+.+..-......+++|.+|++++.++.
T Consensus 110 g~~gf~~Fr~fDi~KPgpI~~ld~~~~gg~gimlDDivAgi~A~~~~~l~~ 160 (178)
T 1y9i_A 110 GSIGFTNYGYIDKVKPGILAKLNEHDGIAVHTFLDDIVGAIAAAAASRLAH 160 (178)
T ss_dssp CGGGHHHHHHHHHHCCTHHHHTTCCCSSCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccchhHHhhhcccCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 3466777777777653 2333322233456688899998888665543
No 8
>3vjj_A P9-1; 3.00A {Rice black streaked dwarf virus}
Probab=28.22 E-value=42 Score=26.34 Aligned_cols=37 Identities=24% Similarity=0.353 Sum_probs=27.3
Q ss_pred HHHHHhhhCcHHHHHHHHhhcCCCCCCccCcHHHHHHHHHHhcCc
Q 026220 152 KIFASTLTYPHEVVRSRLQEQGHHSEKRYSGVVDCIKKVFQQEGL 196 (241)
Q Consensus 152 g~~~~~~~~Pld~iktr~q~~~~~~~~~~~~~~~~~~~i~~~~G~ 196 (241)
-..+++--||||.+|-.++..- ++...+++.++++|+
T Consensus 272 yqLaTFdnypfdllRfqL~Sli--------stp~~I~e~i~K~GL 308 (368)
T 3vjj_A 272 YQLATFDNYPFDLLRFQLSSLI--------STPALIREKIAKEGL 308 (368)
T ss_dssp HHHHHCTTCBHHHHHHHCSSCC--------CCCHHHHHHHHHSCS
T ss_pred eeeecCCCCCHHHHHHHhhhhc--------cChHHHHHHHHhcCc
Confidence 3456777899999998877642 334568888999983
No 9
>3cx5_H Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.13.1 PDB: 1kb9_H* 1kyo_H* 1p84_H* 1ezv_G* 3cxh_H* 2ibz_G*
Probab=22.76 E-value=73 Score=20.48 Aligned_cols=38 Identities=11% Similarity=0.038 Sum_probs=31.1
Q ss_pred cCccccccChhhhHhhhhhhhhHHHHHHHHHHHHhhhc
Q 026220 194 EGLPGFYRGCATNLLRTTPAAVITFTSFEMIHRFLVSY 231 (241)
Q Consensus 194 ~G~~~ly~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (241)
+|+...+|-+...++..+|...+...+|+..++.-...
T Consensus 42 ~~i~N~~RR~~~q~l~v~pPfv~~Y~i~~Wa~~~~e~l 79 (93)
T 3cx5_H 42 NAVFNSFRRFKSQFLYVLIPAGIYWYWWKNGNEYNEFL 79 (93)
T ss_dssp TTSSSCSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHhcceEEechHhHHHHHHHHHHHHHHHH
Confidence 57778888888888899999999999998887765543
No 10
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=21.86 E-value=30 Score=21.32 Aligned_cols=36 Identities=19% Similarity=0.465 Sum_probs=23.9
Q ss_pred CCCccCcHHHHHHHHHHhcCc----cccccChhhhHhhhh
Q 026220 176 SEKRYSGVVDCIKKVFQQEGL----PGFYRGCATNLLRTT 211 (241)
Q Consensus 176 ~~~~~~~~~~~~~~i~~~~G~----~~ly~G~~~~~~~~~ 211 (241)
+.+++.++.+-+..++.+-|+ +.+|.|++....|..
T Consensus 4 nvpkftsvne~vsavltqygvtgpnraiyqgfglkvaral 43 (100)
T 3f2e_A 4 NVPKFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVARAL 43 (100)
T ss_dssp ----CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHH
T ss_pred CCccchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHHHH
Confidence 346777777777777788776 567888888766654
Done!