BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026221
(241 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1S9C|A Chain A, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|B Chain B, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|C Chain C, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|D Chain D, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|E Chain E, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|F Chain F, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|G Chain G, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|H Chain H, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|I Chain I, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|J Chain J, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|K Chain K, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|L Chain L, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
Length = 298
Score = 145 bits (366), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 90/225 (40%), Positives = 127/225 (56%), Gaps = 19/225 (8%)
Query: 1 MAKSSGINPELLLSQKLPEKTFTYTERDAAIYALGVGACGRDAVDADELKYVYHENGQQF 60
MA +SG + QKLP ++ YTE +A +YALGVGA +D D LK++Y G
Sbjct: 1 MAATSGFAGAI--GQKLPPFSYAYTELEAIMYALGVGASIKDPKD---LKFIYE--GSSD 53
Query: 61 IQVLPTFSALFSFE-LEPSGAIDLPGLQHDPRLLLHGQQYMELYKPFPSSASIRNEACIA 119
LPTF + + + G ++PGL + +LHG+QY+ELYKP P + ++ EA +A
Sbjct: 54 FSCLPTFGVIIGQKSMMGGGLAEIPGLSINFAKVLHGEQYLELYKPLPRAGKLKCEAVVA 113
Query: 120 GLHDKGKAAILEIETKSYNAESGELLCMNRMTAFLRGAGGFSNSSQPFSYSKYQTIPVSV 179
+ DKG ++ ++ SY+ + EL+C N+ + FL G+GGF K + V V
Sbjct: 114 DVLDKGSGVVIIMDVYSYSEK--ELICHNQFSLFLVGSGGFGG--------KRTSDKVKV 163
Query: 180 -VKIPKSQPFAVFEDYTQPSQALVYRLSGDYNPLHSDPMVAKAAG 223
V IP P AV D T +QA +YRLSGD+NPLH DP A AG
Sbjct: 164 AVAIPNRPPDAVLTDTTSLNQAALYRLSGDWNPLHIDPNFASLAG 208
>pdb|3OML|A Chain A, Structure Of Full-Length Peroxisomal Multifunctional
Enzyme Type 2 From Drosophila Melanogaster
Length = 613
Score = 112 bits (279), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/234 (34%), Positives = 121/234 (51%), Gaps = 25/234 (10%)
Query: 1 MAKSSGINPELLLSQKLPE-------KTFTYTERDAAIYALGVGACGRDAVDADELKYVY 53
+A++SG E+L +KL E F + ++ YALG+GA ++A D ++++Y
Sbjct: 299 IAEASGTLLEVL--EKLKEGGGDAIEDAFEFNSKELITYALGIGASVKNAKD---MRFLY 353
Query: 54 HENGQQFIQVLPTFSALFSFELEPSG----AIDLPGLQHDPRLLLHGQQYMELYKPFPSS 109
EN F +PTF L L+ S + LP Q D +LHG+QY+E+ P+S
Sbjct: 354 -ENDADF-AAIPTFFVLPGLLLQMSTDKLLSKALPNSQVDFSNILHGEQYLEIVDDLPTS 411
Query: 110 ASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAFLRGAGGFSNSSQPFSY 169
++ + + DKG A++ ++S++ ESG LL N+ T F+ GAG F P +
Sbjct: 412 GTLLTNGKVFDVMDKGSGAVVVTNSESFD-ESGRLLVRNQSTTFIVGAGKFGGKKDPIA- 469
Query: 170 SKYQTIPVSVVKIPKSQPFAVFEDYTQPSQALVYRLSGDYNPLHSDPMVAKAAG 223
+P+ P QP A + T QA +YRLSGD NPLH DP +A AG
Sbjct: 470 ---GVVPLQ--PAPNRQPDATVQYTTSEDQAALYRLSGDKNPLHIDPQMALLAG 518
>pdb|2CDH|S Chain S, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|T Chain T, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|U Chain U, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|V Chain V, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|W Chain W, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|X Chain X, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution
Length = 248
Score = 110 bits (275), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 103/211 (48%), Gaps = 45/211 (21%)
Query: 13 LSQKLPEKTFTYTERDAAIYALGVGACGRDAVDADELKYVYHENGQQFIQVLPTFSALFS 72
+ QKLP ++ YTE +A +YALGVGA +D D LK++Y G LPTF +
Sbjct: 2 IGQKLPPFSYAYTELEAIMYALGVGASIKDPKD---LKFIYE--GSSDFSCLPTFGVI-- 54
Query: 73 FELEPSGAIDLPGLQHDPRLLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEI 132
+ ++LHG+QY+ELYKP P + ++ EA +A + ++ I
Sbjct: 55 -------------IGQKSMMVLHGEQYLELYKPLPRAGKLKCEAVVADV-------LVVI 94
Query: 133 ETKSYNAESGELLCMNRMTAFLRGAGGFSNSSQPFSYSKYQTIPVSVVKIPKSQPFAVFE 192
Y+ EL+C N+ + FL + V+V IP P AV
Sbjct: 95 IMDVYSYSEKELICHNQFSLFLS-----------------DKVKVAVA-IPNRPPDAVLT 136
Query: 193 DYTQPSQALVYRLSGDYNPLHSDPMVAKAAG 223
D T +QA +YRLSGD+NPLH DP A AG
Sbjct: 137 DTTSLNQAALYRLSGDWNPLHIDPNFASLAG 167
>pdb|3KH8|A Chain A, Crystal Structure Of Maoc-Like Dehydratase From
Phytophthora Capsici
pdb|3KH8|B Chain B, Crystal Structure Of Maoc-Like Dehydratase From
Phytophthora Capsici
Length = 332
Score = 93.6 bits (231), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 114/233 (48%), Gaps = 36/233 (15%)
Query: 4 SSGINPELLLSQKLPEKTFTYTERDAAIYALGVGACGRDAVDADELKYVYHENGQQFIQV 63
S +N + +L+ T TY +RD +YA+G+G +L++ Y E ++F
Sbjct: 34 SMSVNVDKILNSPEATYTATYNQRDLLMYAVGIGES--------DLQFTY-EFDEKF-SA 83
Query: 64 LPTFSALFSFELEPSGAIDLP---------GL-QHDPRLLLHGQQYMELYKPF-PSSASI 112
P + F+ + + P G+ +P ++LHG+Q +E+ +P PS ++
Sbjct: 84 FPLYPVCLPFKGQSQDVVPFPPETISAAPDGMPSFNPAMILHGEQSVEILRPLDPSGGTL 143
Query: 113 RNEACIAGLHDKGKAAILEIETK--SYNAESGELLCMNRMTAFLRGAGGFSNSSQPFSYS 170
+ + +DKGK ++E +T+ N +L+ +F+RG G+
Sbjct: 144 TGKTKVISFYDKGKGTLMETQTQFEDGNGPVAKLIS----GSFIRGLTGYEG-------- 191
Query: 171 KYQTIPVSVVKIPKSQPFAVFEDYTQPSQALVYRLSGDYNPLHSDPMVAKAAG 223
K + +P V +IPK QP E T P QA VYRLSGDYN LH DP +AK+ G
Sbjct: 192 KGRKLPARV-QIPKRQPDFNDEFKTSPHQAQVYRLSGDYNSLHIDPEIAKSVG 243
>pdb|3KHP|A Chain A, Crystal Structure Of A Possible Dehydrogenase From
Mycobacterium Tuberculosis At 2.3a Resolution
pdb|3KHP|B Chain B, Crystal Structure Of A Possible Dehydrogenase From
Mycobacterium Tuberculosis At 2.3a Resolution
pdb|3KHP|C Chain C, Crystal Structure Of A Possible Dehydrogenase From
Mycobacterium Tuberculosis At 2.3a Resolution
pdb|3KHP|D Chain D, Crystal Structure Of A Possible Dehydrogenase From
Mycobacterium Tuberculosis At 2.3a Resolution
Length = 311
Score = 87.4 bits (215), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 92/200 (46%), Gaps = 21/200 (10%)
Query: 22 FTYTERDAAIYALGVGACGRDAVDADELKYVYHENGQQFIQVLPTFSALFSFELEPSGAI 81
F +T+RD +YA+GVGA D L + + QVLPT++ + + +
Sbjct: 38 FEWTDRDTLLYAIGVGAGTGD------LAFTTENSHGIDQQVLPTYAVICCPAFGAAAKV 91
Query: 82 DLPGLQHDPRLLLHGQQYMELYKPFPSSASIRNEACIAGLHDKG--KAAILEIETKSYNA 139
+P LLHG Q + L+ P P++ + +A + DKG K AI+ + + +
Sbjct: 92 G----TFNPAALLHGSQGIRLHAPLPAAGKLSVVTEVADIQDKGEGKNAIVVLRGRGCDP 147
Query: 140 ESGELLCMNRMTAFLRGAGGFSNSSQPFSYSKYQTIPVSVVKIPKSQPFAVFEDYTQPSQ 199
ESG L+ T LR + + P + P P A + T+ Q
Sbjct: 148 ESGSLVAETLTTLVLR-----GQGGFGGARGERPAAP----EFPDRHPDARIDMPTREDQ 198
Query: 200 ALVYRLSGDYNPLHSDPMVA 219
AL+YRLSGD NPLHSDP A
Sbjct: 199 ALIYRLSGDRNPLHSDPWFA 218
>pdb|1PN2|A Chain A, Crystal Structure Analysis Of The Selenomethionine
Labelled 2-Enoyl-Coa Hydratase 2 Domain Of Candida
Tropicalis Multifunctional Enzyme Type 2
pdb|1PN2|B Chain B, Crystal Structure Analysis Of The Selenomethionine
Labelled 2-Enoyl-Coa Hydratase 2 Domain Of Candida
Tropicalis Multifunctional Enzyme Type 2
pdb|1PN2|C Chain C, Crystal Structure Analysis Of The Selenomethionine
Labelled 2-Enoyl-Coa Hydratase 2 Domain Of Candida
Tropicalis Multifunctional Enzyme Type 2
pdb|1PN2|D Chain D, Crystal Structure Analysis Of The Selenomethionine
Labelled 2-Enoyl-Coa Hydratase 2 Domain Of Candida
Tropicalis Multifunctional Enzyme Type 2
Length = 280
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 97/206 (47%), Gaps = 15/206 (7%)
Query: 19 EKTFTYTERDAAIYALGVGACGRDAVDADELKYVYHENGQQFIQVLPTFSALFSFELEPS 78
+ + + +RD +Y + +GA + +LKYVY EN F QV+PTF L +F S
Sbjct: 4 DPVWRFDDRDVILYNIALGATTK------QLKYVY-ENDSDF-QVIPTFGHLITFNSGKS 55
Query: 79 GAIDLPGLQH-DPRLLLHGQQYMELYK-PFPSSASIRNEACIAGLHDKGKAAILEIETKS 136
L++ +P LLLHG+ Y++++ P P+ I+ KG ++ +KS
Sbjct: 56 QNSFAKLLRNFNPXLLLHGEHYLKVHSWPPPTEGEIKTTFEPIATTPKGTNVVIVHGSKS 115
Query: 137 YNAESGELLCMNRMTAFLRGAGGFSNSSQPFSYSKYQTIPVSVVKIPKSQPFAVFEDYTQ 196
+ +SGEL+ N T F+R + Y+ + PK P +
Sbjct: 116 VDNKSGELIYSNEATYFIRNC-----QADNKVYADRPAFATNQFLAPKRAPDYQVDVPVS 170
Query: 197 PSQALVYRLSGDYNPLHSDPMVAKAA 222
A +YRLSGD NPLH DP AK A
Sbjct: 171 EDLAALYRLSGDRNPLHIDPNFAKGA 196
>pdb|1PN4|A Chain A, Crystal Structure Of 2-Enoyl-Coa Hydratase 2 Domain Of
Candida Tropicalis Multifunctional Enzyme Type 2
Complexed With (3r)-Hydroxydecanoyl-Coa.
pdb|1PN4|B Chain B, Crystal Structure Of 2-Enoyl-Coa Hydratase 2 Domain Of
Candida Tropicalis Multifunctional Enzyme Type 2
Complexed With (3r)-Hydroxydecanoyl-Coa.
pdb|1PN4|C Chain C, Crystal Structure Of 2-Enoyl-Coa Hydratase 2 Domain Of
Candida Tropicalis Multifunctional Enzyme Type 2
Complexed With (3r)-Hydroxydecanoyl-Coa.
pdb|1PN4|D Chain D, Crystal Structure Of 2-Enoyl-Coa Hydratase 2 Domain Of
Candida Tropicalis Multifunctional Enzyme Type 2
Complexed With (3r)-Hydroxydecanoyl-Coa
Length = 280
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 96/206 (46%), Gaps = 15/206 (7%)
Query: 19 EKTFTYTERDAAIYALGVGACGRDAVDADELKYVYHENGQQFIQVLPTFSALFSFELEPS 78
+ + + +RD +Y + +GA + +LKYVY EN F QV+PTF L +F S
Sbjct: 4 DPVWRFDDRDVILYNIALGATTK------QLKYVY-ENDSDF-QVIPTFGHLITFNSGKS 55
Query: 79 GAIDLPGLQH-DPRLLLHGQQYMELYK-PFPSSASIRNEACIAGLHDKGKAAILEIETKS 136
L++ +P LLLHG+ Y++++ P P+ I+ KG ++ +KS
Sbjct: 56 QNSFAKLLRNFNPMLLLHGEHYLKVHSWPPPTEGEIKTTFEPIATTPKGTNVVIVHGSKS 115
Query: 137 YNAESGELLCMNRMTAFLRGAGGFSNSSQPFSYSKYQTIPVSVVKIPKSQPFAVFEDYTQ 196
+ +SGEL+ N T F+R + Y+ + PK P +
Sbjct: 116 VDNKSGELIYSNEATYFIRNCQADNKV-----YADRPAFATNQFLAPKRAPDYQVDVPVS 170
Query: 197 PSQALVYRLSGDYNPLHSDPMVAKAA 222
A +YRLSGD NPL DP AK A
Sbjct: 171 EDLAALYRLSGDRNPLQIDPNFAKGA 196
>pdb|2VKZ|G Chain G, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|H Chain H, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|I Chain I, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|G Chain G, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|H Chain H, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|I Chain I, Saccharomyces Cerevisiae Fas Type I
pdb|2UV8|G Chain G, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|H Chain H, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|I Chain I, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 2051
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 187 PFAVFEDYTQPSQALVYRLSGDYNPLH 213
P AV + YT + R+SGD NP+H
Sbjct: 1538 PIAVLDSYTPSTNEPYARVSGDLNPIH 1564
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,420,489
Number of Sequences: 62578
Number of extensions: 303520
Number of successful extensions: 622
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 595
Number of HSP's gapped (non-prelim): 9
length of query: 241
length of database: 14,973,337
effective HSP length: 96
effective length of query: 145
effective length of database: 8,965,849
effective search space: 1300048105
effective search space used: 1300048105
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)