Query 026223
Match_columns 241
No_of_seqs 117 out of 1096
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 05:15:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026223.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026223hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03750 proteasome_alpha_type_ 100.0 1.8E-58 3.8E-63 388.0 26.8 221 9-234 1-226 (227)
2 PRK03996 proteasome subunit al 100.0 4.1E-58 9E-63 389.0 27.6 233 1-237 1-239 (241)
3 PTZ00246 proteasome subunit al 100.0 2.3E-57 5E-62 386.9 27.4 229 8-239 4-243 (253)
4 KOG0182 20S proteasome, regula 100.0 1.2E-56 2.6E-61 356.2 25.1 241 1-241 1-246 (246)
5 KOG0176 20S proteasome, regula 100.0 5.4E-57 1.2E-61 354.7 19.3 227 6-237 5-241 (241)
6 KOG0183 20S proteasome, regula 100.0 1.1E-56 2.4E-61 357.0 18.6 229 6-238 1-234 (249)
7 TIGR03633 arc_protsome_A prote 100.0 1.5E-55 3.1E-60 369.6 24.9 218 7-229 1-224 (224)
8 cd03754 proteasome_alpha_type_ 100.0 2.2E-55 4.7E-60 366.2 24.3 208 8-215 1-215 (215)
9 COG0638 PRE1 20S proteasome, a 100.0 3.8E-55 8.1E-60 368.8 26.0 227 8-240 2-235 (236)
10 cd03751 proteasome_alpha_type_ 100.0 4.5E-55 9.7E-60 363.4 23.5 205 7-215 2-212 (212)
11 cd03752 proteasome_alpha_type_ 100.0 1.4E-54 3E-59 361.1 24.1 206 7-215 1-213 (213)
12 cd03755 proteasome_alpha_type_ 100.0 2.3E-54 5.1E-59 358.2 23.7 202 9-215 1-207 (207)
13 cd03749 proteasome_alpha_type_ 100.0 2.9E-54 6.4E-59 358.5 24.1 204 9-216 1-211 (211)
14 cd03756 proteasome_alpha_arche 100.0 1.5E-53 3.3E-58 354.4 24.5 205 8-216 1-210 (211)
15 cd01911 proteasome_alpha prote 100.0 1.5E-52 3.2E-57 348.0 22.9 203 9-215 1-209 (209)
16 KOG0181 20S proteasome, regula 100.0 4.5E-53 9.9E-58 331.9 16.9 224 8-237 5-233 (233)
17 cd03753 proteasome_alpha_type_ 100.0 3.3E-52 7.2E-57 346.8 23.0 203 9-215 1-213 (213)
18 KOG0184 20S proteasome, regula 100.0 2.2E-52 4.7E-57 334.1 20.0 230 3-236 1-237 (254)
19 KOG0178 20S proteasome, regula 100.0 4.9E-51 1.1E-55 324.0 19.6 231 7-239 3-242 (249)
20 TIGR03690 20S_bact_beta protea 100.0 3.7E-47 7.9E-52 317.6 25.7 205 30-239 1-216 (219)
21 KOG0863 20S proteasome, regula 100.0 1.1E-47 2.4E-52 308.5 19.9 226 8-238 5-237 (264)
22 cd03760 proteasome_beta_type_4 100.0 2.5E-46 5.4E-51 307.9 24.1 191 30-224 1-194 (197)
23 PTZ00488 Proteasome subunit be 100.0 4E-46 8.7E-51 315.6 25.8 205 23-239 32-240 (247)
24 cd03758 proteasome_beta_type_2 100.0 8.5E-46 1.9E-50 303.8 24.4 187 32-224 2-190 (193)
25 cd03759 proteasome_beta_type_3 100.0 1.7E-45 3.6E-50 302.6 23.9 190 30-225 2-194 (195)
26 cd03761 proteasome_beta_type_5 100.0 4.8E-45 1E-49 298.2 24.3 185 32-225 1-187 (188)
27 cd03757 proteasome_beta_type_1 100.0 7.6E-45 1.6E-49 302.2 23.8 193 27-224 5-206 (212)
28 TIGR03634 arc_protsome_B prote 100.0 3.2E-44 7E-49 292.5 23.9 182 31-219 1-184 (185)
29 cd03764 proteasome_beta_archea 100.0 2.2E-43 4.9E-48 288.3 24.6 185 32-225 1-187 (188)
30 TIGR03691 20S_bact_alpha prote 100.0 1.5E-43 3.3E-48 296.6 23.8 198 26-234 23-228 (228)
31 cd03765 proteasome_beta_bacter 100.0 1.9E-43 4.2E-48 296.4 24.0 185 33-220 2-202 (236)
32 cd03763 proteasome_beta_type_7 100.0 6.4E-43 1.4E-47 285.9 24.1 184 32-225 1-186 (189)
33 cd03762 proteasome_beta_type_6 100.0 6.9E-43 1.5E-47 285.4 24.1 182 32-220 1-184 (188)
34 PF00227 Proteasome: Proteasom 100.0 2.2E-42 4.7E-47 282.4 22.4 184 30-215 3-190 (190)
35 cd01912 proteasome_beta protea 100.0 1.6E-41 3.4E-46 277.5 24.2 182 32-219 1-184 (189)
36 cd01906 proteasome_protease_Hs 100.0 5.4E-41 1.2E-45 272.3 24.1 180 32-215 1-182 (182)
37 KOG0179 20S proteasome, regula 100.0 6.2E-37 1.3E-41 243.4 19.1 196 26-226 25-231 (235)
38 KOG0177 20S proteasome, regula 100.0 3.8E-37 8.3E-42 241.2 17.4 188 33-226 3-192 (200)
39 KOG0175 20S proteasome, regula 100.0 4E-36 8.8E-41 245.3 17.5 197 30-235 70-268 (285)
40 KOG0174 20S proteasome, regula 100.0 2.9E-36 6.2E-41 237.0 15.3 202 26-235 15-218 (224)
41 KOG0173 20S proteasome, regula 100.0 4.7E-35 1E-39 238.5 17.3 188 26-222 33-222 (271)
42 KOG0185 20S proteasome, regula 100.0 9.5E-34 2.1E-38 228.7 14.4 199 30-232 40-242 (256)
43 PRK05456 ATP-dependent proteas 100.0 1.2E-31 2.6E-36 214.9 18.6 165 31-214 1-171 (172)
44 KOG0180 20S proteasome, regula 100.0 2.9E-31 6.4E-36 205.1 17.3 185 30-220 7-194 (204)
45 cd01913 protease_HslV Protease 100.0 1.1E-30 2.4E-35 208.0 18.8 163 32-214 1-170 (171)
46 TIGR03692 ATP_dep_HslV ATP-dep 100.0 3.6E-30 7.7E-35 205.1 18.0 165 32-214 1-170 (171)
47 cd01901 Ntn_hydrolase The Ntn 100.0 4E-29 8.6E-34 197.4 22.0 161 32-198 1-163 (164)
48 COG3484 Predicted proteasome-t 99.5 6.9E-13 1.5E-17 106.0 11.2 185 32-219 2-202 (255)
49 COG5405 HslV ATP-dependent pro 99.5 7.8E-13 1.7E-17 102.1 10.8 168 30-215 3-175 (178)
50 PF10584 Proteasome_A_N: Prote 98.6 4.7E-09 1E-13 55.0 -0.4 17 9-25 1-17 (23)
51 PF09894 DUF2121: Uncharacteri 96.0 0.68 1.5E-05 37.6 15.0 49 168-218 131-180 (194)
52 COG4079 Uncharacterized protei 93.0 5 0.00011 33.9 13.5 168 32-233 2-196 (293)
53 PF00178 Ets: Ets-domain; Int 73.9 8 0.00017 27.3 4.5 29 211-239 20-48 (85)
54 smart00413 ETS erythroblast tr 69.0 8.3 0.00018 27.3 3.7 27 211-237 20-46 (87)
55 KOG3361 Iron binding protein i 64.5 15 0.00033 28.1 4.4 44 147-192 71-114 (157)
56 KOG3806 Predicted transcriptio 55.1 17 0.00038 29.2 3.6 26 211-236 87-112 (177)
57 PF07499 RuvA_C: RuvA, C-termi 52.2 8.6 0.00019 23.6 1.2 34 162-196 12-45 (47)
58 PF11211 DUF2997: Protein of u 47.4 45 0.00097 20.8 3.9 32 147-178 3-34 (48)
59 PF03646 FlaG: FlaG protein; 46.2 62 0.0013 23.4 5.2 33 207-239 65-98 (107)
60 cd06404 PB1_aPKC PB1 domain is 45.5 1E+02 0.0023 21.6 6.8 53 181-238 17-69 (83)
61 PRK08868 flagellar protein Fla 42.1 1.5E+02 0.0032 23.1 6.8 33 207-239 99-132 (144)
62 PRK07738 flagellar protein Fla 42.0 1.5E+02 0.0032 22.3 6.6 32 208-239 75-107 (117)
63 PF06057 VirJ: Bacterial virul 40.1 41 0.00088 27.5 3.7 35 102-140 43-77 (192)
64 PF14804 Jag_N: Jag N-terminus 37.1 56 0.0012 20.7 3.2 29 184-218 5-33 (52)
65 PRK08452 flagellar protein Fla 36.9 1.8E+02 0.004 21.9 6.7 32 208-239 82-114 (124)
66 PF03928 DUF336: Domain of unk 36.2 44 0.00096 25.2 3.2 36 182-220 1-36 (132)
67 PF04539 Sigma70_r3: Sigma-70 35.5 82 0.0018 21.0 4.2 32 86-117 3-34 (78)
68 PRK09732 hypothetical protein; 32.9 1.2E+02 0.0025 23.3 5.0 37 181-220 4-40 (134)
69 TIGR02261 benz_CoA_red_D benzo 32.6 80 0.0017 27.1 4.5 57 130-196 97-158 (262)
70 cd06396 PB1_NBR1 The PB1 domai 32.3 1.8E+02 0.0038 20.3 5.6 48 183-238 21-68 (81)
71 PF00564 PB1: PB1 domain; Int 29.6 1.8E+02 0.0038 19.5 5.9 51 182-238 20-70 (84)
72 PRK02260 S-ribosylhomocysteina 28.3 2.5E+02 0.0055 22.2 6.2 61 143-203 71-150 (158)
73 TIGR03192 benz_CoA_bzdQ benzoy 27.9 1.2E+02 0.0026 26.6 4.8 56 128-193 123-183 (293)
74 PF09887 DUF2114: Uncharacteri 26.8 2.2E+02 0.0047 26.0 6.2 58 181-239 59-118 (448)
75 TIGR03285 methan_mark_14 putat 25.7 1.8E+02 0.0039 26.5 5.5 58 181-239 57-115 (445)
76 cd06402 PB1_p62 The PB1 domain 25.6 2.5E+02 0.0053 19.8 5.4 50 184-238 27-76 (87)
77 TIGR03544 DivI1A_domain DivIVA 25.4 60 0.0013 18.3 1.8 18 222-239 15-32 (34)
78 PF05589 DUF768: Protein of un 24.7 76 0.0016 21.1 2.3 40 166-205 5-44 (64)
79 PF08140 Cuticle_1: Crustacean 24.4 1.5E+02 0.0033 17.7 3.3 30 14-46 4-33 (40)
80 PF08529 NusA_N: NusA N-termin 23.8 3.1E+02 0.0067 20.3 6.4 43 181-224 12-55 (122)
81 COG4245 TerY Uncharacterized p 23.8 1.9E+02 0.004 23.8 4.8 43 188-230 22-65 (207)
82 TIGR02259 benz_CoA_red_A benzo 23.4 1.4E+02 0.003 27.6 4.4 56 131-196 268-328 (432)
83 PF08289 Flu_M1_C: Influenza M 22.5 2.8E+02 0.0061 19.4 5.3 49 75-123 38-86 (95)
84 KOG2599 Pyridoxal/pyridoxine/p 22.2 5.3E+02 0.012 22.5 8.4 46 158-203 218-263 (308)
85 PF01242 PTPS: 6-pyruvoyl tetr 22.1 1.5E+02 0.0032 21.9 3.8 46 76-121 43-98 (123)
86 COG4728 Uncharacterized protei 21.8 98 0.0021 22.6 2.6 31 63-93 9-39 (124)
87 PF01726 LexA_DNA_bind: LexA D 20.8 2E+02 0.0043 18.9 3.8 20 95-114 17-36 (65)
88 COG1370 Prefoldin, molecular c 20.5 2.1E+02 0.0046 22.5 4.3 35 11-47 30-65 (155)
89 COG1754 Uncharacterized C-term 20.4 74 0.0016 27.7 2.0 55 135-193 77-133 (298)
90 COG3193 GlcG Uncharacterized p 20.3 2.5E+02 0.0054 21.8 4.7 36 181-219 5-40 (141)
91 PHA03324 nuclear egress membra 20.2 1.3E+02 0.0028 25.1 3.3 67 100-167 49-118 (274)
92 PRK14603 ruvA Holliday junctio 20.1 1.3E+02 0.0029 24.6 3.4 37 161-197 160-196 (197)
No 1
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.8e-58 Score=387.95 Aligned_cols=221 Identities=37% Similarity=0.636 Sum_probs=211.5
Q ss_pred CCCccceecCCCceeEE-----EEccCCceEEEEEcCCEEEEEEeccCCCCcccCCCcceeEEecCcEEEEEecchHHHH
Q 026223 9 YDRHITIFSPEGRLFQV-----AVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADAR 83 (241)
Q Consensus 9 yd~~~t~fsp~G~l~Q~-----a~~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~ 83 (241)
||+++|+|||||||+|| |++ +|+|+|||+++||||||+|++.+++++.+++.+||++|+++++|+++|+.+|++
T Consensus 1 yd~~~t~fsp~Grl~QveyA~~av~-~G~t~igik~~dgVvlaad~~~~~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~ 79 (227)
T cd03750 1 YSFSLTTFSPSGKLVQIEYALAAVS-SGAPSVGIKAANGVVLATEKKVPSPLIDESSVHKVEQITPHIGMVYSGMGPDFR 79 (227)
T ss_pred CCCCCceECCCCeEhHHHHHHHHHH-cCCCEEEEEeCCEEEEEEeecCCccccCCCCcceEEEEcCCEEEEEeEcHHhHH
Confidence 89999999999999999 777 699999999999999999999998888888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcceeeeeEEee
Q 026223 84 TLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSA 163 (241)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~~~~ai 163 (241)
.+.+++|.+++.|++.++++++++.++++|++++|.|+++++.|||++++||+|||+ .||+||++||+|++.+++++|+
T Consensus 80 ~l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rP~~v~~li~G~D~-~g~~Ly~~d~~G~~~~~~~~a~ 158 (227)
T cd03750 80 VLVKKARKIAQQYYLVYGEPIPVSQLVREIASVMQEYTQSGGVRPFGVSLLIAGWDE-GGPYLYQVDPSGSYFTWKATAI 158 (227)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCCCChheEEEEEEEeC-CCCEEEEECCCCCEEeeeEEEE
Confidence 999999999999999999999999999999999999999999999999999999996 6999999999999999999999
Q ss_pred CCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhcccCCCCcEEEEEEEcCCCcEEEcCHHHHHHHH
Q 026223 164 GLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHL 234 (241)
Q Consensus 164 G~gs~~~~~~Le~~~~~~~~~s~~ea~~la~~~l~~~~~~d~~~~~iei~ii~~~~~~~k~l~~~ei~~~l 234 (241)
|+|+.+++++||++| +++||++||++++++||+.+.+|++...+++|++|++++ ++++++++||++++
T Consensus 159 G~g~~~~~~~Le~~~--~~~ms~eeai~l~~~~l~~~~~~~l~~~~iev~iv~~~~-~~~~~~~~ei~~~~ 226 (227)
T cd03750 159 GKNYSNAKTFLEKRY--NEDLELEDAIHTAILTLKEGFEGQMTEKNIEIGICGETK-GFRLLTPAEIKDYL 226 (227)
T ss_pred CCCCHHHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEECCC-CEEECCHHHHHHHh
Confidence 999999999999996 579999999999999999999888866789999999874 49999999999987
No 2
>PRK03996 proteasome subunit alpha; Provisional
Probab=100.00 E-value=4.1e-58 Score=389.00 Aligned_cols=233 Identities=38% Similarity=0.676 Sum_probs=220.0
Q ss_pred CCCC-CCCCCCCccceecCCCceeEE-----EEccCCceEEEEEcCCEEEEEEeccCCCCcccCCCcceeEEecCcEEEE
Q 026223 1 MSRG-SGGGYDRHITIFSPEGRLFQV-----AVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLL 74 (241)
Q Consensus 1 ~~~~-~~~~yd~~~t~fsp~G~l~Q~-----a~~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~ 74 (241)
|-|. ++++||+++|+|||||||+|+ |++ +|+|+|||+++||||||+|++.+++++..++.+||++|+++++|+
T Consensus 1 ~~~~~~~~~y~~~~~~fsp~Gr~~Q~eya~~av~-~G~t~igik~~dgVvlaad~r~~~~~~~~~~~~KI~~I~~~i~~~ 79 (241)
T PRK03996 1 MMMQPQQMGYDRAITIFSPDGRLYQVEYAREAVK-RGTTAVGVKTKDGVVLAVDKRITSPLIEPSSIEKIFKIDDHIGAA 79 (241)
T ss_pred CCCCccccccCCCCceECCCCeEhHHHHHHHHHH-hCCCEEEEEeCCEEEEEEeccCCCcccCCCccceEEEEcCCEEEE
Confidence 4454 689999999999999999999 777 699999999999999999999998888788999999999999999
Q ss_pred EecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcc
Q 026223 75 ATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGH 154 (241)
Q Consensus 75 ~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~ 154 (241)
+||+.+|++.+.++++.+++.|+++++++++++.+++++++.+|.|++++++|||++++||||||+ +||+||.+||+|+
T Consensus 80 ~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~~~~ilaG~d~-~gp~Ly~id~~G~ 158 (241)
T PRK03996 80 SAGLVADARVLIDRARVEAQINRLTYGEPIGVETLTKKICDHKQQYTQHGGVRPFGVALLIAGVDD-GGPRLFETDPSGA 158 (241)
T ss_pred EcccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccchheEEEEEEEeC-CcCEEEEECCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999997 7899999999999
Q ss_pred eeeeeEEeeCCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhcccCCCCcEEEEEEEcCCCcEEEcCHHHHHHHH
Q 026223 155 FFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHL 234 (241)
Q Consensus 155 ~~~~~~~aiG~gs~~~~~~Le~~~~~~~~~s~~ea~~la~~~l~~~~~~d~~~~~iei~ii~~~~~~~k~l~~~ei~~~l 234 (241)
+.+++++|+|.|+..++++||+.| +++|+++||++++++||+.+.+++....+++|+++++++++|+.++++||++++
T Consensus 159 ~~~~~~~a~G~g~~~~~~~Le~~~--~~~~s~eeai~l~~~al~~~~~~~~~~~~i~i~ii~~~~~~~~~~~~~ei~~~~ 236 (241)
T PRK03996 159 YLEYKATAIGAGRDTVMEFLEKNY--KEDLSLEEAIELALKALAKANEGKLDPENVEIAYIDVETKKFRKLSVEEIEKYL 236 (241)
T ss_pred eecceEEEECCCcHHHHHHHHHhc--ccCCCHHHHHHHHHHHHHHHhccCCCCCcEEEEEEECCCCcEEECCHHHHHHHH
Confidence 999999999999999999999986 689999999999999999999876655589999999998789999999999999
Q ss_pred Hhh
Q 026223 235 TAI 237 (241)
Q Consensus 235 ~~i 237 (241)
+++
T Consensus 237 ~~~ 239 (241)
T PRK03996 237 EKL 239 (241)
T ss_pred HHh
Confidence 876
No 3
>PTZ00246 proteasome subunit alpha; Provisional
Probab=100.00 E-value=2.3e-57 Score=386.87 Aligned_cols=229 Identities=34% Similarity=0.542 Sum_probs=215.0
Q ss_pred CCCCccceecCCCceeEE-----EEccCCceEEEEEcCCEEEEEEeccCCCCcccC-CCcceeEEecCcEEEEEecchHH
Q 026223 8 GYDRHITIFSPEGRLFQV-----AVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDH-TSVTHLFPITKYLGLLATGMTAD 81 (241)
Q Consensus 8 ~yd~~~t~fsp~G~l~Q~-----a~~~~G~t~igi~~~dgVvla~d~~~~~~l~~~-~~~~Ki~~i~~~i~~~~sG~~~D 81 (241)
+||+++|+|||||||+|+ |++ +|+|+|||+++||||||+|++.+.+++.. ++.+|||+|+++++|+++|+.+|
T Consensus 4 ~yd~~~~~fsp~Grl~QvEYA~~av~-~g~t~Igik~~dgVvlaad~r~s~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D 82 (253)
T PTZ00246 4 RYDSRTTTFSPEGRLYQVEYALEAIN-NASLTVGILCKEGVILGADKPISSKLLDPGKINEKIYKIDSHIFCAVAGLTAD 82 (253)
T ss_pred ccCCCCceECCCCEEhHHHHHHHHHH-hCCCEEEEEECCEEEEEEecCCCCcCccCCCCcccEEEecCCEEEEEEEcHHH
Confidence 799999999999999999 787 59999999999999999999999666554 46899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcceeeeeEE
Q 026223 82 ARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKAT 161 (241)
Q Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~~~~ 161 (241)
++.+.+.+|.+++.|++.++++++++.+++.++..+|.|+|++++|||+|++||+|||+++||+||.+||+|++.+++++
T Consensus 83 ~~~l~~~~r~~~~~~~~~~~~~~~v~~l~~~l~~~~q~~~~~~~~rP~~v~~li~G~D~~~gp~Ly~~D~~Gs~~~~~~~ 162 (253)
T PTZ00246 83 ANILINQCRLYAQRYRYTYGEPQPVEQLVVQICDLKQSYTQFGGLRPFGVSFLFAGYDENLGYQLYHTDPSGNYSGWKAT 162 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccCCEEEEEEEEeCCCCcEEEEECCCCCEecceEE
Confidence 99999999999999999999999999999999999999999999999999999999997679999999999999999999
Q ss_pred eeCCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhcccCCCC-cEEEEEEEcCC----CcEEEcCHHHHHHHHHh
Q 026223 162 SAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKEN----PEFRVLSIEEIDEHLTA 236 (241)
Q Consensus 162 aiG~gs~~~~~~Le~~~~~~~~~s~~ea~~la~~~l~~~~~~d~~~~-~iei~ii~~~~----~~~k~l~~~ei~~~l~~ 236 (241)
|+|+|+.+++++||+.| +++||++||++++++||+.+..+|..++ +++|++|++++ +.|+.++++||++++.+
T Consensus 163 a~G~gs~~~~~~Le~~~--~~~ms~eeai~l~~~al~~~~~~d~~s~~~vev~ii~~~~~~~~~~~~~l~~~ei~~~l~~ 240 (253)
T PTZ00246 163 AIGQNNQTAQSILKQEW--KEDLTLEQGLLLAAKVLTKSMDSTSPKADKIEVGILSHGETDGEPIQKMLSEKEIAELLKK 240 (253)
T ss_pred EECCCcHHHHHHHHHhc--cCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCcCCCCCeEECCHHHHHHHHHH
Confidence 99999999999999986 6799999999999999999999887765 79999999874 34999999999999999
Q ss_pred hhc
Q 026223 237 ISE 239 (241)
Q Consensus 237 i~~ 239 (241)
+.+
T Consensus 241 ~~~ 243 (253)
T PTZ00246 241 VTQ 243 (253)
T ss_pred Hhh
Confidence 864
No 4
>KOG0182 consensus 20S proteasome, regulatory subunit alpha type PSMA6/SCL1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-56 Score=356.19 Aligned_cols=241 Identities=69% Similarity=1.048 Sum_probs=235.2
Q ss_pred CCCCCCCCCCCccceecCCCceeEE-----EEccCCceEEEEEcCCEEEEEEeccCCCCcccCCCcceeEEecCcEEEEE
Q 026223 1 MSRGSGGGYDRHITIFSPEGRLFQV-----AVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLA 75 (241)
Q Consensus 1 ~~~~~~~~yd~~~t~fsp~G~l~Q~-----a~~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~ 75 (241)
|||||+.+||+++|+|||||||+|| |+++.|-|+||++++|++|+++.|+.+.+|++.+.+..+|+|..+++|++
T Consensus 1 ~s~gs~agfDrhitIFspeGrLyQVEYafkAin~~gltsVavrgkDcavvvsqKkvpDKLld~~tvt~~f~itk~ig~v~ 80 (246)
T KOG0182|consen 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQAGLTSVAVRGKDCAVVVTQKKVPDKLLDSSTVTHLFRITKKIGCVI 80 (246)
T ss_pred CCCCCcCCccceEEEECCCceEEeeehHHHHhhcCCCceEEEcCCceEEEEecccCcccccccccceeEEEeeccceEEE
Confidence 8999999999999999999999999 88877999999999999999999999999999999999999999999999
Q ss_pred ecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcce
Q 026223 76 TGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHF 155 (241)
Q Consensus 76 sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~ 155 (241)
+|+.+|++..+.++|.++..++++||.+||++.|++++++..|.|||+..|||+||.+++.|+|++.||.||.+||.|-+
T Consensus 81 tG~~aDar~~v~rar~eAa~~~yk~Gyemp~DiL~k~~Ad~~QvytQ~a~mRplg~~~~~i~~D~E~gP~vYk~DpAGyy 160 (246)
T KOG0182|consen 81 TGMIADARSQVQRARYEAAEFRYKYGYEMPCDILAKRMADKSQVYTQNAAMRPLGVAATLIGVDEERGPSVYKTDPAGYY 160 (246)
T ss_pred ecCCcchHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHhhHHHHHhhhhhhcccceeEEEEEeccccCcceEeecCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999899999999999999
Q ss_pred eeeeEEeeCCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhcccCCCCcEEEEEEEcCCCcEEEcCHHHHHHHHH
Q 026223 156 FGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLT 235 (241)
Q Consensus 156 ~~~~~~aiG~gs~~~~~~Le~~~~~~~~~s~~ea~~la~~~l~~~~~~d~~~~~iei~ii~~~~~~~k~l~~~ei~~~l~ 235 (241)
..++++|.|.....+..+||++|+.+.++|.+|++++++.||..++..|..+.++||++++++.++|+.|+.+||+++|.
T Consensus 161 ~g~kAtaaG~Kq~e~tsfLEKk~Kk~~~~t~~e~ve~ai~al~~sl~~Dfk~se~EVgvv~~~~p~f~~Ls~~eie~hL~ 240 (246)
T KOG0182|consen 161 YGFKATAAGVKQQEATSFLEKKYKKDIDLTFEETVETAISALQSSLGIDFKSSELEVGVVTVDNPEFRILSAEEIEEHLQ 240 (246)
T ss_pred ccceeeecccchhhHHHHHHHhhccCccchHHHHHHHHHHHHHHHHhcccCCcceEEEEEEcCCcceeeccHHHHHHHHH
Confidence 99999999999999999999999877789999999999999999998899999999999999999999999999999999
Q ss_pred hhhccC
Q 026223 236 AISERD 241 (241)
Q Consensus 236 ~i~~~~ 241 (241)
+|++||
T Consensus 241 ~IAEkd 246 (246)
T KOG0182|consen 241 AIAEKD 246 (246)
T ss_pred HhhhcC
Confidence 999987
No 5
>KOG0176 consensus 20S proteasome, regulatory subunit alpha type PSMA5/PUP2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-57 Score=354.71 Aligned_cols=227 Identities=34% Similarity=0.614 Sum_probs=215.0
Q ss_pred CCCCCCccceecCCCceeEE-----EEccCCceEEEEEcCCEEEEEEeccCCCCcccCCCcceeEEecCcEEEEEecchH
Q 026223 6 GGGYDRHITIFSPEGRLFQV-----AVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTA 80 (241)
Q Consensus 6 ~~~yd~~~t~fsp~G~l~Q~-----a~~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~ 80 (241)
.+.||+.+|+|||||||||| |+| .|+|.|||+.++||||+++||.+++|+.+++.+||++|++||+|++||+.+
T Consensus 5 rseydrgVNTfSpEGRlfQVEYaieAik-LGsTaIGv~TkEgVvL~vEKritSpLm~p~sveKi~eid~HIgca~SGl~a 83 (241)
T KOG0176|consen 5 RSEYDRGVNTFSPEGRLFQVEYAIEAIK-LGSTAIGVKTKEGVVLAVEKRITSPLMEPSSVEKIVEIDDHIGCAMSGLIA 83 (241)
T ss_pred HHHhcccccccCCCceeeehhhHHHHHh-cCCceeeeeccceEEEEEeccccCcccCchhhhhheehhhceeeecccccc
Confidence 46899999999999999999 777 799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhcc-----CccccceeeEEEEEcCCCCcEEEEECCCcce
Q 026223 81 DARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHA-----YMRPLGVVAMVLSIDEECGPRLFKCDPAGHF 155 (241)
Q Consensus 81 D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~-----~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~ 155 (241)
|++.+++++|.+|++|++.||++++++.++..++++...|.... -.|||||++++||+|+ +||+||..||+|++
T Consensus 84 DarTlve~arv~~qnh~f~Y~e~i~VEs~tq~v~~LaLrFGe~~~~~~~msRPFGValliAG~D~-~gpqL~h~dPSGtf 162 (241)
T KOG0176|consen 84 DARTLVERARVETQNHWFTYGEPISVESLTQAVSDLALRFGEGDDEEAIMSRPFGVALLIAGHDE-TGPQLYHLDPSGTF 162 (241)
T ss_pred chHHHHHHHHHHhhhceeecCCcccHHHHHHHHHHHHhHhCCCcchhhhhcCCcceEEEEeeccC-CCceEEEeCCCCce
Confidence 99999999999999999999999999999999999998886432 2499999999999996 89999999999999
Q ss_pred eeeeEEeeCCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhcccCCCCcEEEEEEEcCCCcEEEcCHHHHHHHHH
Q 026223 156 FGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLT 235 (241)
Q Consensus 156 ~~~~~~aiG~gs~~~~~~Le~~~~~~~~~s~~ea~~la~~~l~~~~~~d~~~~~iei~ii~~~~~~~k~l~~~ei~~~l~ 235 (241)
.++++-|||+|++-+.+.|++.| .++||++||+.+++..|+.+++..+++.|+++.+|++++ +|+.++++|++.++.
T Consensus 163 ~~~~AKAIGSgsEga~~~L~~e~--~~~ltL~ea~~~~L~iLkqVMeeKl~~~Nvev~~vt~e~-~f~~~t~EE~~~~i~ 239 (241)
T KOG0176|consen 163 IRYKAKAIGSGSEGAESSLQEEY--HKDLTLKEAEKIVLKILKQVMEEKLNSNNVEVAVVTPEG-EFHIYTPEEVEQVIK 239 (241)
T ss_pred EEecceeccccchHHHHHHHHHH--hhcccHHHHHHHHHHHHHHHHHHhcCccceEEEEEcccC-ceEecCHHHHHHHHh
Confidence 99999999999999999999997 578999999999999999999999999999999999986 599999999999887
Q ss_pred hh
Q 026223 236 AI 237 (241)
Q Consensus 236 ~i 237 (241)
++
T Consensus 240 ~~ 241 (241)
T KOG0176|consen 240 RL 241 (241)
T ss_pred cC
Confidence 53
No 6
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-56 Score=357.00 Aligned_cols=229 Identities=36% Similarity=0.562 Sum_probs=218.2
Q ss_pred CCCCCCccceecCCCceeEE-----EEccCCceEEEEEcCCEEEEEEeccCCCCcccCCCcceeEEecCcEEEEEecchH
Q 026223 6 GGGYDRHITIFSPEGRLFQV-----AVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTA 80 (241)
Q Consensus 6 ~~~yd~~~t~fsp~G~l~Q~-----a~~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~ 80 (241)
+++||+.+|+|||||+|||| ||+ +|+|.||++++|+|||+.+++...+|.+.+...||..+++|++|+++|+.+
T Consensus 1 msrydraltvFSPDGhL~QVEYAqEAvr-kGstaVgvrg~~~vvlgvEkkSv~~Lq~~r~~rkI~~ld~hV~mafaGl~a 79 (249)
T KOG0183|consen 1 MSRYDRALTVFSPDGHLFQVEYAQEAVR-KGSTAVGVRGNNCVVLGVEKKSVPKLQDERTVRKISMLDDHVVMAFAGLTA 79 (249)
T ss_pred CCccccceEEECCCCCEEeeHhHHHHHh-cCceEEEeccCceEEEEEeecchhhhhhhhhhhhheeecceeeEEecCCCc
Confidence 35899999999999999999 888 699999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcceeeeeE
Q 026223 81 DARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKA 160 (241)
Q Consensus 81 D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~~~ 160 (241)
|++.|++++|.+|++|+++.+++++++.++++|+.+.|+|||..+.||||++++++|||+++.|+||++||+|.+.+|++
T Consensus 80 DArilinrArvecqShrlt~edpvtveyitRyiA~~kQrYTqs~grRPFGvs~Li~GfD~~g~p~lyqtePsG~f~ewka 159 (249)
T KOG0183|consen 80 DARILINRARVECQSHRLTLEDPVTVEYITRYIAGLKQRYTQSNGRRPFGVSTLIGGFDPDGTPRLYQTEPSGIFSEWKA 159 (249)
T ss_pred cceeehhhHhHhhhhhhcccCCCcHHHHHHHHHHHhhhhhhccCCcccccceEEEEeeCCCCCeeeEeeCCCcchhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999988899999999999999999
Q ss_pred EeeCCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhcccCCCCcEEEEEEEcCCCcEEEcCHHHHHHHHHhhh
Q 026223 161 TSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAIS 238 (241)
Q Consensus 161 ~aiG~gs~~~~~~Le~~~~~~~~~s~~ea~~la~~~l~~~~~~d~~~~~iei~ii~~~~~~~k~l~~~ei~~~l~~i~ 238 (241)
.|||.+++.++++||++|...+..|..++++|++++|.++... ...++|++++++.+. ++.|+.++|+.++..|+
T Consensus 160 ~aiGr~sk~VrEflEK~y~e~~~~~~~~~ikL~ir~LleVvqs--~~~nie~aVm~~~~~-~~~l~~~~I~~~v~~ie 234 (249)
T KOG0183|consen 160 NAIGRSSKTVREFLEKNYKEEAIATEGETIKLAIRALLEVVQS--GGKNIEVAVMKRRKD-LKMLESEEIDDIVKEIE 234 (249)
T ss_pred cccccccHHHHHHHHHhcccccccccccHHHHHHHHHHHHhhc--CCCeeEEEEEecCCc-eeecCHHHHHHHHHHHH
Confidence 9999999999999999986666689999999999999999853 345899999999875 99999999999998886
No 7
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=1.5e-55 Score=369.65 Aligned_cols=218 Identities=41% Similarity=0.709 Sum_probs=206.5
Q ss_pred CCCCCccceecCCCceeEE-----EEccCCceEEEEEcCCEEEEEEeccCCCCcccCCCcceeEEecCcEEEEEecchHH
Q 026223 7 GGYDRHITIFSPEGRLFQV-----AVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 81 (241)
Q Consensus 7 ~~yd~~~t~fsp~G~l~Q~-----a~~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D 81 (241)
++||.++|+|||||||+|+ |++ +|+|+|||+++||||||+|+|.+++++..++.+||++|+++++|++||+.+|
T Consensus 1 ~~~~~~~~~f~p~Grl~Qieya~~av~-~G~tvigi~~~dgvvlaad~r~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D 79 (224)
T TIGR03633 1 MGYDRAITVFSPDGRLYQVEYAREAVK-RGTTAVGIKTKDGVVLAVDKRITSKLVEPSSIEKIFKIDDHIGAATSGLVAD 79 (224)
T ss_pred CCCCCCCceECCCCeEeHHHHHHHHHH-cCCCEEEEEECCEEEEEEeccCCccccCCCccceEEEECCCEEEEEeecHHh
Confidence 4899999999999999999 777 6999999999999999999999988888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcceeeeeEE
Q 026223 82 ARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKAT 161 (241)
Q Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~~~~ 161 (241)
++.+.+.++.++..|+++++++++++.++++|++.+|.|++++++|||+|++||+|+|+ ++|+||.+||.|++.+++++
T Consensus 80 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~~~~~~rP~~v~~ll~G~d~-~~~~Ly~~D~~G~~~~~~~~ 158 (224)
T TIGR03633 80 ARVLIDRARIEAQINRLTYGEPIDVETLAKKICDLKQQYTQHGGVRPFGVALLIAGVDD-GGPRLFETDPSGALLEYKAT 158 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCccccceEEEEEEEeC-CcCEEEEECCCCCeecceEE
Confidence 99999999999999999999999999999999999999999989999999999999996 79999999999999999999
Q ss_pred eeCCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhcccCCCC-cEEEEEEEcCCCcEEEcCHHH
Q 026223 162 SAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSIEE 229 (241)
Q Consensus 162 aiG~gs~~~~~~Le~~~~~~~~~s~~ea~~la~~~l~~~~~~d~~~~-~iei~ii~~~~~~~k~l~~~e 229 (241)
|+|+|+.+++++||+.| +++|+++||++++++||+.+.+ |..++ +++|++|+++++.|+.++++|
T Consensus 159 a~G~g~~~~~~~L~~~~--~~~~~~eeai~l~~~al~~~~~-d~~~~~~i~i~ii~~~g~~~~~~~~~~ 224 (224)
T TIGR03633 159 AIGAGRQAVTEFLEKEY--REDLSLDEAIELALKALYSAVE-DKLTPENVEVAYITVEDKKFRKLSVEE 224 (224)
T ss_pred EECCCCHHHHHHHHHhc--cCCCCHHHHHHHHHHHHHHHhc-ccCCCCcEEEEEEEcCCCcEEECCCCC
Confidence 99999999999999986 6899999999999999999997 65555 799999999887799999875
No 8
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.2e-55 Score=366.21 Aligned_cols=208 Identities=71% Similarity=1.097 Sum_probs=196.1
Q ss_pred CCCCccceecCCCceeEE-----EEccCCceEEEEEcCCEEEEEEeccCCCCcccCCCcceeEEecCcEEEEEecchHHH
Q 026223 8 GYDRHITIFSPEGRLFQV-----AVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADA 82 (241)
Q Consensus 8 ~yd~~~t~fsp~G~l~Q~-----a~~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~ 82 (241)
+||+++|+|||||||+|+ |+++.|+|+|||+++||||||+|+|.+++++..++.+|||+|+++++|++||+.+|+
T Consensus 1 ~yd~~~~~fsp~Grl~Qveya~~a~~~~g~t~igi~~~d~Vvlaad~r~~~~~i~~~~~~Ki~~I~~~i~~~~sG~~~D~ 80 (215)
T cd03754 1 GFDRHITIFSPEGRLYQVEYAFKAVKNAGLTSVAVRGKDCAVVVTQKKVPDKLIDPSTVTHLFRITDEIGCVMTGMIADS 80 (215)
T ss_pred CCCCCCeeECCCCeEeHHHhHHHHHhcCCccEEEEEeCCEEEEEEeccccccccCCcccCceEEEcCCEEEEEEechhhH
Confidence 699999999999999999 766568899999999999999999999778777788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcceeeeeEEe
Q 026223 83 RTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATS 162 (241)
Q Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~~~~a 162 (241)
+.+.+++|.+++.|+++++++|+++.+|+.+++++|.||++++.|||++++|++|||+++||+||++||+|++.+++++|
T Consensus 81 ~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~q~yt~~~~~RP~~v~~ii~G~D~~~gp~Ly~~Dp~Gs~~~~~~~a 160 (215)
T cd03754 81 RSQVQRARYEAAEFKYKYGYEMPVDVLAKRIADINQVYTQHAYMRPLGVSMILIGIDEELGPQLYKCDPAGYFAGYKATA 160 (215)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhCCCCCcCCeeEEEEEEEeCCCCeEEEEEcCCccEEeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999976799999999999999999999
Q ss_pred eCCChHHHHHHHHhhccCCCCC--CHHHHHHHHHHHHHHhhcccCCCCcEEEEEE
Q 026223 163 AGLKEQEAINFLEKKMKNDPAF--TFQETVQTAISTLQSVLQEDFKASEIEVGVV 215 (241)
Q Consensus 163 iG~gs~~~~~~Le~~~~~~~~~--s~~ea~~la~~~l~~~~~~d~~~~~iei~ii 215 (241)
+|+|+++++++||+.|+.+.+| |++||++++++||..+.+||+...++||+|+
T Consensus 161 ~G~gs~~~~~~Le~~~~~~~~~~~s~eeai~l~~~al~~~~~rd~~~~~~ei~~~ 215 (215)
T cd03754 161 AGVKEQEATNFLEKKLKKKPDLIESYEETVELAISCLQTVLSTDFKATEIEVGVV 215 (215)
T ss_pred ECCCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEC
Confidence 9999999999999998544458 9999999999999999999988668999885
No 9
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-55 Score=368.83 Aligned_cols=227 Identities=42% Similarity=0.702 Sum_probs=212.7
Q ss_pred CCCCccceecCCCceeEE-----EEccCCceEEEEEcCCEEEEEEeccCCC-CcccCCCcceeEEecCcEEEEEecchHH
Q 026223 8 GYDRHITIFSPEGRLFQV-----AVKAAGVTSIGVRGKDSVCVVTQKKVPD-KLLDHTSVTHLFPITKYLGLLATGMTAD 81 (241)
Q Consensus 8 ~yd~~~t~fsp~G~l~Q~-----a~~~~G~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~i~~~i~~~~sG~~~D 81 (241)
+||+.+++|||||+++|+ ++++.|+|+|||+++||||||+|+|.+. .++..++.+|||+|+||++|++||+.+|
T Consensus 2 ~~~~~~~~fsp~g~l~q~e~a~~a~~~~gtT~vgik~~dgVVlaadkr~t~~~~~~~~~~~Ki~~I~d~i~~~~sG~~aD 81 (236)
T COG0638 2 GYDRAITIFSPEGRLFQVEYALEAVKRGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGMAIAGLAAD 81 (236)
T ss_pred CCcCcceeECCCCchHHHHHHHHHHHcCCceEEEEEecCEEEEEEeccCCCCceecccccceEEEecCCEEEEeccCcHh
Confidence 699999999999999999 6665579999999999999999999994 4555677999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcceeeeeEE
Q 026223 82 ARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKAT 161 (241)
Q Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~~~~ 161 (241)
++.|++++|.+++.|++.++++|+++.+++++++++|.|+++ +|||++++||+|+|+ ++|+||++||+|++.++++.
T Consensus 82 a~~lv~~~r~~a~~~~~~~~~~i~v~~la~~ls~~l~~~~~~--~rP~gv~~iiaG~d~-~~p~Ly~~Dp~G~~~~~~~~ 158 (236)
T COG0638 82 AQVLVRYARAEAQLYRLRYGEPISVEALAKLLSNILQEYTQS--GRPYGVSLLVAGVDD-GGPRLYSTDPSGSYNEYKAT 158 (236)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccC--cccceEEEEEEEEcC-CCCeEEEECCCCceeecCEE
Confidence 999999999999999999999999999999999999999987 899999999999998 89999999999999999999
Q ss_pred eeCCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhcccCCCC-cEEEEEEEcCCCcEEEcCHHHHHHHHHhhhcc
Q 026223 162 SAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSIEEIDEHLTAISER 240 (241)
Q Consensus 162 aiG~gs~~~~~~Le~~~~~~~~~s~~ea~~la~~~l~~~~~~d~~~~-~iei~ii~~~~~~~k~l~~~ei~~~l~~i~~~ 240 (241)
|+|+|++.++++||+.| +++|++|||++++++||+.+.+||..++ +++|+++++++ +++.+++++++.++..++.+
T Consensus 159 a~Gsgs~~a~~~Le~~y--~~~m~~eeai~la~~al~~a~~rd~~s~~~~~v~vi~~~~-~~~~~~~~~~~~~~~~~~~~ 235 (236)
T COG0638 159 AIGSGSQFAYGFLEKEY--REDLSLEEAIELAVKALRAAIERDAASGGGIEVAVITKDE-GFRKLDGEEIKKLLDDLSEK 235 (236)
T ss_pred EEcCCcHHHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHHhccccCCCCeEEEEEEcCC-CeEEcCHHHHHHHHHHHhhc
Confidence 99999999999999997 6889999999999999999999998665 79999999974 49999999999999887754
No 10
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.5e-55 Score=363.39 Aligned_cols=205 Identities=37% Similarity=0.538 Sum_probs=194.3
Q ss_pred CCCCCccceecCCCceeEE-----EEccCCceEEEEEcCCEEEEEEeccCCCCcccCCCcceeEEecCcEEEEEecchHH
Q 026223 7 GGYDRHITIFSPEGRLFQV-----AVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 81 (241)
Q Consensus 7 ~~yd~~~t~fsp~G~l~Q~-----a~~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D 81 (241)
.+||+++|+|||||||+|+ |++ +|+|+|||+++||||||+|++.+++++..++.+|||+|+++++|+++|+.+|
T Consensus 2 ~~yd~~~t~fsp~Grl~Qveya~~a~~-~G~tvIgik~kdgVvla~d~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D 80 (212)
T cd03751 2 TGYDLSASTFSPDGRVFQVEYANKAVE-NSGTAIGIRCKDGVVLAVEKLVTSKLYEPGSNKRIFNVDRHIGIAVAGLLAD 80 (212)
T ss_pred CCccCCCceECCCCcchHHHHHHHHHh-cCCCEEEEEeCCEEEEEEEccccccccCcchhcceeEecCcEEEEEEEChHh
Confidence 5899999999999999999 776 6999999999999999999999888887788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcceeeeeEE
Q 026223 82 ARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKAT 161 (241)
Q Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~~~~ 161 (241)
++.+.+++|.+++.|+++++++++++.++++|++.+|.|++++++|||++++||+|||+ +||+||.+||+|++.+++++
T Consensus 81 ~~~l~~~~r~~~~~y~~~~~~~~~v~~la~~ls~~~~~~t~~~~~rP~~vs~li~G~D~-~gp~Ly~~D~~Gs~~~~~~~ 159 (212)
T cd03751 81 GRHLVSRAREEAENYRDNYGTPIPVKVLADRVAMYMHAYTLYSSVRPFGCSVLLGGYDS-DGPQLYMIEPSGVSYGYFGC 159 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccCCCcCCceEEEEEEEEeC-CcCEEEEECCCCCEEeeEEE
Confidence 99999999999999999999999999999999999999999999999999999999996 78999999999999999999
Q ss_pred eeCCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhcc-cCCCCcEEEEEE
Q 026223 162 SAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQE-DFKASEIEVGVV 215 (241)
Q Consensus 162 aiG~gs~~~~~~Le~~~~~~~~~s~~ea~~la~~~l~~~~~~-d~~~~~iei~ii 215 (241)
|+|+|+.+++++||+.| +++||++||+++++++|+.+.+. +....+|||+++
T Consensus 160 a~G~g~~~a~~~Lek~~--~~dms~eeai~l~~~~L~~~~~~~~~~~~~iei~~~ 212 (212)
T cd03751 160 AIGKGKQAAKTELEKLK--FSELTCREAVKEAAKIIYIVHDEIKDKAFELELSWV 212 (212)
T ss_pred EECCCCHHHHHHHHHhc--cCCCCHHHHHHHHHHHHHHHhhccCCCCccEEEEEC
Confidence 99999999999999996 67999999999999999999984 456668999874
No 11
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.4e-54 Score=361.08 Aligned_cols=206 Identities=33% Similarity=0.553 Sum_probs=194.1
Q ss_pred CCCCCccceecCCCceeEE-----EEccCCceEEEEEcCCEEEEEEeccCCCCcccC-CCcceeEEecCcEEEEEecchH
Q 026223 7 GGYDRHITIFSPEGRLFQV-----AVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDH-TSVTHLFPITKYLGLLATGMTA 80 (241)
Q Consensus 7 ~~yd~~~t~fsp~G~l~Q~-----a~~~~G~t~igi~~~dgVvla~d~~~~~~l~~~-~~~~Ki~~i~~~i~~~~sG~~~ 80 (241)
.+||+++|+|||||||+|+ |++ +|+|+|||+++||||||+|++.+.+++.. ++.+||++|+++++|++||+.+
T Consensus 1 ~~yd~~~~~fsp~Grl~Qveya~~a~~-~G~t~igi~~~dgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~ 79 (213)
T cd03752 1 RRYDSRTTIFSPEGRLYQVEYAMEAIS-HAGTCLGILAKDGIVLAAEKKVTSKLLDQSFSSEKIYKIDDHIACAVAGITS 79 (213)
T ss_pred CCcCCCCceECCCCEEhHHHhHHHHHh-cCCCEEEEEeCCEEEEEEEeccCCcccCCCcCcceEEEecCCEEEEEecChH
Confidence 3799999999999999999 776 69999999999999999999999666664 4899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcceeeeeE
Q 026223 81 DARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKA 160 (241)
Q Consensus 81 D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~~~ 160 (241)
|++.+.+++|.+++.|+++++++|+++.+++.|+..+|.||++++.|||+|++||+|||++.||+||.+||+|++.++++
T Consensus 80 D~~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~~~~t~~~~~RP~~v~~li~G~D~~~g~~ly~~d~~G~~~~~~~ 159 (213)
T cd03752 80 DANILINYARLIAQRYLYSYQEPIPVEQLVQRLCDIKQGYTQYGGLRPFGVSFLYAGWDKHYGFQLYQSDPSGNYSGWKA 159 (213)
T ss_pred hHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCcccceeEEEEEEEeCCCCCEEEEECCCCCeeeeeE
Confidence 99999999999999999999999999999999999999999999999999999999999757999999999999999999
Q ss_pred EeeCCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhcccCCCC-cEEEEEE
Q 026223 161 TSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVV 215 (241)
Q Consensus 161 ~aiG~gs~~~~~~Le~~~~~~~~~s~~ea~~la~~~l~~~~~~d~~~~-~iei~ii 215 (241)
+|+|+|+.+++++||+.| +++||++||++++++||..+.+|+...+ +++|+++
T Consensus 160 ~a~G~gs~~~~~~Le~~y--~~~ms~eea~~l~~~al~~~~~r~~~~~~~~ei~~~ 213 (213)
T cd03752 160 TAIGNNNQAAQSLLKQDY--KDDMTLEEALALAVKVLSKTMDSTKLTSEKLEFATL 213 (213)
T ss_pred EEECCCcHHHHHHHHHhc--cCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEC
Confidence 999999999999999996 6899999999999999999999886554 7999875
No 12
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.3e-54 Score=358.23 Aligned_cols=202 Identities=38% Similarity=0.621 Sum_probs=191.7
Q ss_pred CCCccceecCCCceeEE-----EEccCCceEEEEEcCCEEEEEEeccCCCCcccCCCcceeEEecCcEEEEEecchHHHH
Q 026223 9 YDRHITIFSPEGRLFQV-----AVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADAR 83 (241)
Q Consensus 9 yd~~~t~fsp~G~l~Q~-----a~~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~ 83 (241)
||+++|+|||||||+|+ |++ +|+|+|||+++||||||+|++..+.++.+++.+||++|+++++|++||+.+|++
T Consensus 1 ~d~~~~~fsp~Gr~~Qveya~~av~-~G~t~Igik~~dgVvlaad~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~ 79 (207)
T cd03755 1 YDRAITVFSPDGHLFQVEYAQEAVR-KGTTAVGVRGKDCVVLGVEKKSVAKLQDPRTVRKICMLDDHVCLAFAGLTADAR 79 (207)
T ss_pred CCCCCceECCCCeEeHHHHHHHHHH-cCCCEEEEEeCCEEEEEEecCCCCcccCCCccCcEEEECCCEEEEEecchhhHH
Confidence 89999999999999999 777 699999999999999999999888788777899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcceeeeeEEee
Q 026223 84 TLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSA 163 (241)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~~~~ai 163 (241)
.+.+++|.+++.|+++++++|+++.++++|++++|.|++++++|||++++||+|||++++|+||.+||+|++.+++++|+
T Consensus 80 ~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~y~~~~~~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~a~ 159 (207)
T cd03755 80 VLINRARLECQSHRLTVEDPVTVEYITRYIAGLQQRYTQSGGVRPFGISTLIVGFDPDGTPRLYQTDPSGTYSAWKANAI 159 (207)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCcccceeEEEEEEEeCCCCeEEEEECCCcCEEcceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999767999999999999999999999
Q ss_pred CCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhcccCCCCcEEEEEE
Q 026223 164 GLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVV 215 (241)
Q Consensus 164 G~gs~~~~~~Le~~~~~~~~~s~~ea~~la~~~l~~~~~~d~~~~~iei~ii 215 (241)
|+|+.+++++||++| +++||.+||++++++||+.+.+ ....++||+++
T Consensus 160 G~gs~~~~~~Le~~~--~~~ms~eeai~l~~~~l~~~~~--~~~~~~e~~~~ 207 (207)
T cd03755 160 GRNSKTVREFLEKNY--KEEMTRDDTIKLAIKALLEVVQ--SGSKNIELAVM 207 (207)
T ss_pred CCCCHHHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHhC--CCCCeEEEEEC
Confidence 999999999999996 6899999999999999999996 44458999875
No 13
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.9e-54 Score=358.51 Aligned_cols=204 Identities=34% Similarity=0.608 Sum_probs=191.9
Q ss_pred CCCccceecCCCceeEE-----EEccCCceEEEEEcCCEEEEEEeccCCCCcccCCCcceeEEecCcEEEEEecchHHHH
Q 026223 9 YDRHITIFSPEGRLFQV-----AVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADAR 83 (241)
Q Consensus 9 yd~~~t~fsp~G~l~Q~-----a~~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~ 83 (241)
||+++|+|||||||+|+ |++ +|+|+|||+++||||||+|+|.++++. ++.+|||+|+++++|++||+.+|++
T Consensus 1 yd~~~t~fsp~Grl~Qveya~~av~-~G~t~IgIk~~dgVvlaad~r~~~~l~--~~~~KI~~I~~~i~~~~sG~~~D~~ 77 (211)
T cd03749 1 YDTDVTTWSPQGRLFQVEYAMEAVK-QGSATVGLKSKTHAVLVALKRATSELS--SYQKKIFKVDDHIGIAIAGLTADAR 77 (211)
T ss_pred CCCCCceECCCCeEeHHHHHHHHHh-cCCCEEEEEeCCEEEEEEeccCccccC--CccccEEEeCCCEEEEEEeChHhHH
Confidence 89999999999999999 776 699999999999999999999887653 4669999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcceeeeeEEee
Q 026223 84 TLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSA 163 (241)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~~~~ai 163 (241)
.+.+++|.+++.|+++++++|+++.+++.+++.+|.||++.+.|||+|++||+|||+ .||+||++||+|++.+++++|+
T Consensus 78 ~l~~~~r~~~~~~~~~~~~~~~v~~la~~is~~~~~~t~~~~~rP~~v~~ii~G~D~-~gp~Ly~~Dp~G~~~~~~~~a~ 156 (211)
T cd03749 78 VLSRYMRQECLNYRFVYDSPIPVSRLVSKVAEKAQINTQRYGRRPYGVGLLIAGYDE-SGPHLFQTCPSGNYFEYKATSI 156 (211)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEEcC-CCCeEEEECCCcCEeeeeEEEE
Confidence 999999999999999999999999999999999999999999999999999999996 6899999999999999999999
Q ss_pred CCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhccc--CCCCcEEEEEEE
Q 026223 164 GLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQED--FKASEIEVGVVS 216 (241)
Q Consensus 164 G~gs~~~~~~Le~~~~~~~~~s~~ea~~la~~~l~~~~~~d--~~~~~iei~ii~ 216 (241)
|+|++.++++||++|+.+++||++||+++++++|+.+.++| ....+|||++|+
T Consensus 157 G~g~~~a~~~Le~~~~~~~~ms~ee~i~~~~~~l~~~~~~~~~~~~~~iei~ii~ 211 (211)
T cd03749 157 GARSQSARTYLERHFEEFEDCSLEELIKHALRALRETLPGEQELTIKNVSIAIVG 211 (211)
T ss_pred CCCcHHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHhccCCCCCCCcEEEEEEC
Confidence 99999999999999865579999999999999999999877 455589999983
No 14
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.5e-53 Score=354.37 Aligned_cols=205 Identities=40% Similarity=0.705 Sum_probs=195.8
Q ss_pred CCCCccceecCCCceeEE-----EEccCCceEEEEEcCCEEEEEEeccCCCCcccCCCcceeEEecCcEEEEEecchHHH
Q 026223 8 GYDRHITIFSPEGRLFQV-----AVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADA 82 (241)
Q Consensus 8 ~yd~~~t~fsp~G~l~Q~-----a~~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~ 82 (241)
+||+++|+|||||||+|+ |++ +|+|+|||+++||||||+|++.+++++..++.+||++|+++++|++||+.+|+
T Consensus 1 ~y~~~~~~fsp~G~l~Q~eya~~av~-~G~t~igik~~dgvvla~d~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~ 79 (211)
T cd03756 1 GYDRAITVFSPDGRLYQVEYAREAVK-RGTTALGIKCKEGVVLAVDKRITSKLVEPESIEKIYKIDDHVGAATSGLVADA 79 (211)
T ss_pred CCCCCCceECCCCeEhHHHHHHHHHH-cCCCEEEEEECCEEEEEEeccCCCcccCCCccceEEEEcCCEEEEEecCHHHH
Confidence 599999999999999999 676 69999999999999999999999888888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcceeeeeEEe
Q 026223 83 RTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATS 162 (241)
Q Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~~~~a 162 (241)
+.+.++++.+++.|+++++++++++.+++.|++.+|.|++++++|||++++||+|||+ ++|+||.+||.|++.+++++|
T Consensus 80 ~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~ll~G~D~-~~~~ly~vd~~G~~~~~~~~a 158 (211)
T cd03756 80 RVLIDRARVEAQIHRLTYGEPIDVEVLVKKICDLKQQYTQHGGVRPFGVALLIAGVDD-GGPRLFETDPSGAYNEYKATA 158 (211)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCeechhEEEEEEEEeC-CCCEEEEECCCCCeeeeEEEE
Confidence 9999999999999999999999999999999999999999999999999999999997 799999999999999999999
Q ss_pred eCCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhcccCCCCcEEEEEEE
Q 026223 163 AGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVS 216 (241)
Q Consensus 163 iG~gs~~~~~~Le~~~~~~~~~s~~ea~~la~~~l~~~~~~d~~~~~iei~ii~ 216 (241)
+|+|+++++++||+.| +|+|+++||++++++||+.+.+++....+++|++|+
T Consensus 159 ~G~g~~~~~~~Le~~~--~~~m~~~ea~~l~~~~l~~~~~~~~~~~~~~v~ii~ 210 (211)
T cd03756 159 IGSGRQAVTEFLEKEY--KEDMSLEEAIELALKALYAALEENETPENVEIAYVT 210 (211)
T ss_pred ECCCCHHHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEe
Confidence 9999999999999996 689999999999999999999888855589999986
No 15
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=100.00 E-value=1.5e-52 Score=347.95 Aligned_cols=203 Identities=51% Similarity=0.824 Sum_probs=193.6
Q ss_pred CCCccceecCCCceeEE-----EEccCCceEEEEEcCCEEEEEEeccCCCCcccCCCcceeEEecCcEEEEEecchHHHH
Q 026223 9 YDRHITIFSPEGRLFQV-----AVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADAR 83 (241)
Q Consensus 9 yd~~~t~fsp~G~l~Q~-----a~~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~ 83 (241)
||+.+|+|||||||+|+ +++ +|+|+|||+++||||||+|++.+++++..++.+||++|+++++++++|+.+|++
T Consensus 1 ~~~~~~~f~~~G~~~q~eya~~~~~-~G~tvigi~~~dgVvlaaD~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~ 79 (209)
T cd01911 1 YDRSITTFSPEGRLFQVEYALEAVK-NGSTAVGIKGKDGVVLAVEKKVTSKLLDPSSVEKIFKIDDHIGCAVAGLTADAR 79 (209)
T ss_pred CCCCCccCCCCCEEeHHHHHHHHHH-cCCCEEEEEECCEEEEEEEecCCccccCCcccceEEEecCCeEEEeccCcHhHH
Confidence 89999999999999999 666 699999999999999999999997777778899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcceeeeeEEee
Q 026223 84 TLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSA 163 (241)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~~~~ai 163 (241)
.+.+.++.++..|+++++++|+++.+++++++++|.|++++++|||++++||+|||++++|+||.+||.|++.+++++++
T Consensus 80 ~l~~~l~~~~~~~~~~~g~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~iv~G~d~~~~~~Ly~iD~~G~~~~~~~~a~ 159 (209)
T cd01911 80 VLVNRARVEAQNYRYTYGEPIPVEVLVKRIADLAQVYTQYGGVRPFGVSLLIAGYDEEGGPQLYQTDPSGTYFGYKATAI 159 (209)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccChhheEEEEEEcCCCCcEEEEECCCCCeeeeeEEEe
Confidence 99999999999999999999999999999999999999999999999999999999866999999999999999999999
Q ss_pred CCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhcccCCCC-cEEEEEE
Q 026223 164 GLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVV 215 (241)
Q Consensus 164 G~gs~~~~~~Le~~~~~~~~~s~~ea~~la~~~l~~~~~~d~~~~-~iei~ii 215 (241)
|+|+.+++++||+.| +|+||.+||++++++||+.+.+||+ ++ +++|+++
T Consensus 160 G~g~~~~~~~L~~~~--~~~ms~~ea~~l~~~~l~~~~~~d~-~~~~~~i~i~ 209 (209)
T cd01911 160 GKGSQEAKTFLEKRY--KKDLTLEEAIKLALKALKEVLEEDK-KAKNIEIAVV 209 (209)
T ss_pred CCCcHHHHHHHHHhc--ccCCCHHHHHHHHHHHHHHHHhccC-CCCcEEEEEC
Confidence 999999999999996 6899999999999999999999999 65 7999875
No 16
>KOG0181 consensus 20S proteasome, regulatory subunit alpha type PSMA2/PRE8 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-53 Score=331.85 Aligned_cols=224 Identities=36% Similarity=0.594 Sum_probs=215.3
Q ss_pred CCCCccceecCCCceeEE-----EEccCCceEEEEEcCCEEEEEEeccCCCCcccCCCcceeEEecCcEEEEEecchHHH
Q 026223 8 GYDRHITIFSPEGRLFQV-----AVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADA 82 (241)
Q Consensus 8 ~yd~~~t~fsp~G~l~Q~-----a~~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~ 82 (241)
+|..++|+|||+|||-|+ |++ .|.+.|||+..||||||++++..+.|....+.+|+++|.++|+|.+||+.+|+
T Consensus 5 ~y~fslTtFSpsGKL~QieyAL~Av~-~G~~SvGi~A~nGvVlatekk~~s~L~~~~sv~KV~~i~~~IG~vYSGmgpD~ 83 (233)
T KOG0181|consen 5 GYSFSLTTFSPSGKLVQIEYALTAVV-NGQTSVGIKAANGVVLATEKKDVSPLVDEESVRKVEKITPHIGCVYSGMGPDY 83 (233)
T ss_pred ccceeeEEEcCCCceehHHHHHHHHh-CCCCceeeeecCceEEEeccCCCCccchhhhhhhHhhccCCcceEEecCCCce
Confidence 788999999999999999 777 59999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcceeeeeEEe
Q 026223 83 RTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATS 162 (241)
Q Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~~~~a 162 (241)
+.+++..|+.++.|...|+++||+..|...++..+|+|||+++.||||+++++||||+ ++|.||++||+|++..|+++|
T Consensus 84 RvlV~~~rkiAe~Yy~vY~e~~pt~qlv~~~asvmQEyTqsgGvrPFGvslliaG~~~-~~p~LyQvdPSGsyf~wkatA 162 (233)
T KOG0181|consen 84 RVLVHKSRKIAEQYYRVYGEPIPTTQLVQEVASVMQEYTQSGGVRPFGVSLLIAGWDE-GGPLLYQVDPSGSYFAWKATA 162 (233)
T ss_pred eehhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEeecCC-CceeEEEECCccceeehhhhh
Confidence 9999999999999999999999999999999999999999999999999999999997 799999999999999999999
Q ss_pred eCCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhcccCCCCcEEEEEEEcCCCcEEEcCHHHHHHHHHhh
Q 026223 163 AGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAI 237 (241)
Q Consensus 163 iG~gs~~~~~~Le~~~~~~~~~s~~ea~~la~~~l~~~~~~d~~~~~iei~ii~~~~~~~k~l~~~ei~~~l~~i 237 (241)
+|.+...++++||++| +.+|.+||++..|+.+|++..+..+.+.||||+++..+ .|+.+++.||+++|.++
T Consensus 163 ~Gkn~v~aktFlEkR~--~edleldd~ihtailtlkE~fege~~~~nieigv~~~~--~F~~lt~~eI~d~l~~l 233 (233)
T KOG0181|consen 163 MGKNYVNAKTFLEKRY--NEDLELDDAIHTAILTLKESFEGEMTAKNIEIGVCGEN--GFRRLTPAEIEDYLASL 233 (233)
T ss_pred hccCcchHHHHHHHHh--ccccccchHHHHHHHHHHHHhccccccCceEEEEecCC--ceeecCHHHHHHHHhcC
Confidence 9999999999999986 68999999999999999999988899999999999855 49999999999999864
No 17
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.3e-52 Score=346.79 Aligned_cols=203 Identities=36% Similarity=0.643 Sum_probs=191.3
Q ss_pred CCCccceecCCCceeEE-----EEccCCceEEEEEcCCEEEEEEeccCCCCcccCCCcceeEEecCcEEEEEecchHHHH
Q 026223 9 YDRHITIFSPEGRLFQV-----AVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADAR 83 (241)
Q Consensus 9 yd~~~t~fsp~G~l~Q~-----a~~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~ 83 (241)
||+++|+|||||||+|+ |++ +|+|+|||+++||||||+|++.+++++..++.+||++|+++++|++||+.+|++
T Consensus 1 ~~~~~~~f~p~G~~~Q~eya~~a~~-~G~t~igik~~dgVvlaad~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~ 79 (213)
T cd03753 1 YDRGVNTFSPEGRLFQVEYAIEAIK-LGSTAIGIKTKEGVVLAVEKRITSPLMEPSSVEKIMEIDDHIGCAMSGLIADAR 79 (213)
T ss_pred CCCCCccCCCCCeEhHHHHHHHHHh-cCCCEEEEEeCCEEEEEEecccCCcCcCCCccceEEEEcCCEEEEEecCHHHHH
Confidence 89999999999999999 776 699999999999999999999987787778899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhc-----cCccccceeeEEEEEcCCCCcEEEEECCCcceeee
Q 026223 84 TLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQH-----AYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGH 158 (241)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~-----~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~ 158 (241)
.+.+.+|.+++.|+++++++++++.++++|++.+|.|+++ +++|||+|++||+|||+ +||+||.+||.|++.++
T Consensus 80 ~l~~~~r~~~~~~~~~~~~~i~~~~~~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ii~G~D~-~gp~Ly~vd~~G~~~~~ 158 (213)
T cd03753 80 TLIDHARVEAQNHRFTYNEPMTVESVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVDE-NGPQLFHTDPSGTFTRC 158 (213)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhCcccccccccccceEEEEEEEEcC-CCCEEEEECCCCCeecc
Confidence 9999999999999999999999999999999999999874 34799999999999996 78999999999999999
Q ss_pred eEEeeCCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhcccCCCCcEEEEEE
Q 026223 159 KATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVV 215 (241)
Q Consensus 159 ~~~aiG~gs~~~~~~Le~~~~~~~~~s~~ea~~la~~~l~~~~~~d~~~~~iei~ii 215 (241)
+++|+|++++.++++|+++| +++||++||++++++||+.+.+++....++||++|
T Consensus 159 ~~~a~G~~~~~~~~~L~~~~--~~~ls~eeai~l~~~~l~~~~~~~~~~~~~ei~~~ 213 (213)
T cd03753 159 DAKAIGSGSEGAQSSLQEKY--HKDMTLEEAEKLALSILKQVMEEKLNSTNVELATV 213 (213)
T ss_pred cEEEECCCcHHHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEC
Confidence 99999999999999999996 67899999999999999999887777778999875
No 18
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-52 Score=334.05 Aligned_cols=230 Identities=34% Similarity=0.511 Sum_probs=208.7
Q ss_pred CCC-CCCCCCccceecCCCceeEE-----EEccCCceEEEEEcCCEEEEEEeccCCCCcccCCCcceeEEecCcEEEEEe
Q 026223 3 RGS-GGGYDRHITIFSPEGRLFQV-----AVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLAT 76 (241)
Q Consensus 3 ~~~-~~~yd~~~t~fsp~G~l~Q~-----a~~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~s 76 (241)
|+| +.+||+..++||||||+||+ ||. +|+|+|||||+||||+++||..+++|..+...+||+.|++|++|+++
T Consensus 1 MSsIGtGyDls~s~fSpdGrvfQveYA~KAve-n~~T~IGIk~kdGVVl~vEKli~SkLy~p~sn~ri~~V~r~iG~ava 79 (254)
T KOG0184|consen 1 MSSIGTGYDLSASTFSPDGRVFQVEYAQKAVE-NSGTCIGIKCKDGVVLAVEKLITSKLYEPGSNERIFSVDRHIGMAVA 79 (254)
T ss_pred CCcccccccccceeeCCCCceehHHHHHHHHh-cCCcEEEEecCCeEEEEEeeeecccccccCCCCceEeecccccEEEe
Confidence 344 77899999999999999999 777 59999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCccee
Q 026223 77 GMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFF 156 (241)
Q Consensus 77 G~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~ 156 (241)
|+.+|.+.+.+++|.++.+|+.+|+.++|...++..++++.|.||.++..||||++.++++||. +||+||.++|+|..+
T Consensus 80 Gl~~Dg~~l~~~ar~ea~~~~~~y~~piP~~~la~rva~yvh~~Tly~~vRpfG~~~~~~~yd~-~g~~LymiepSG~~~ 158 (254)
T KOG0184|consen 80 GLIPDGRHLVNRARDEAASWRKNYGDPIPGKHLADRVADYVHAFTLYSSVRPFGASTILGSYDD-EGPQLYMIEPSGSSY 158 (254)
T ss_pred ccccchHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHhhhheeehhhccccccceEEEEEEeC-CCceEEEEcCCCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999995 899999999999999
Q ss_pred eeeEEeeCCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhcccCC-CCcEEEEEEEcCCCcEEEcCHHHHHHHHH
Q 026223 157 GHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFK-ASEIEVGVVSKENPEFRVLSIEEIDEHLT 235 (241)
Q Consensus 157 ~~~~~aiG~gs~~~~~~Le~~~~~~~~~s~~ea~~la~~~l~~~~~~d~~-~~~iei~ii~~~~~~~k~l~~~ei~~~l~ 235 (241)
.|+++|+|.|.+.+++.||+. ....|+.+|+++.+.+.|+.+.+..-. ...+||.|+..+..+.+..-|+||-+..+
T Consensus 159 ~Y~~aaiGKgrq~aKtElEKL--~~~~mt~~e~VkeaakIiY~~HDe~KdK~feiEm~wvg~eTnG~h~~vp~el~~ea~ 236 (254)
T KOG0184|consen 159 GYKGAAIGKGRQAAKTELEKL--KIDEMTCKELVKEAAKIIYKVHDENKDKEFEIEMGWVGEETNGLHEKVPSELLEEAE 236 (254)
T ss_pred ceeeeeccchhHHHHHHHHhc--ccccccHHHHHHHHHheeEeecccccCcceEEEEEEEEeecCCccccCcHHHHHHHH
Confidence 999999999999999999998 356899999999999999999876433 33799999997654455444456655544
Q ss_pred h
Q 026223 236 A 236 (241)
Q Consensus 236 ~ 236 (241)
+
T Consensus 237 ~ 237 (254)
T KOG0184|consen 237 K 237 (254)
T ss_pred H
Confidence 4
No 19
>KOG0178 consensus 20S proteasome, regulatory subunit alpha type PSMA4/PRE9 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-51 Score=323.96 Aligned_cols=231 Identities=32% Similarity=0.545 Sum_probs=214.0
Q ss_pred CCCCCccceecCCCceeEE-----EEccCCceEEEEEcCCEEEEEEeccCCCCcccCC-CcceeEEecCcEEEEEecchH
Q 026223 7 GGYDRHITIFSPEGRLFQV-----AVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHT-SVTHLFPITKYLGLLATGMTA 80 (241)
Q Consensus 7 ~~yd~~~t~fsp~G~l~Q~-----a~~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~-~~~Ki~~i~~~i~~~~sG~~~ 80 (241)
..||...|+|||||||+|| ++. +.+|+|||-++||||||++++.+++|+..+ ..+|||+|+|+++|+++|+.+
T Consensus 3 r~ydsrttiFspEGRLyQVEyAmeais-~aGt~iGila~DGvvLa~e~k~t~kll~t~~~~EKiY~l~d~iaC~vaGlt~ 81 (249)
T KOG0178|consen 3 RRYDSRTTIFSPEGRLYQVEYAMEAIS-HAGTCIGILASDGVVLAGENKVTSKLLDTSIPMEKIYKLNDNIACAVAGLTS 81 (249)
T ss_pred cCcCCcccccCCCcchHHHHHHHHHHh-hhcceeEEEecCceEEEeecccchhhhhccccHHHhhhcCCceEEEEecccc
Confidence 4799999999999999999 555 577999999999999999999999998764 789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcceeeeeE
Q 026223 81 DARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKA 160 (241)
Q Consensus 81 D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~~~ 160 (241)
|+..|++++|..+|.|..+||+++|++.|++.++++.|.|||+++.|||||+++-+|||...|.+||+-||+|++..|++
T Consensus 82 DAnvL~n~aRi~AQ~yl~~y~e~iP~eqLv~~lcdiKQayTQygG~RPFGVSfLYaGwd~~~gyqLy~SdPSGny~gWka 161 (249)
T KOG0178|consen 82 DANVLKNYARIIAQRYLFRYGEEIPCEQLVTFLCDIKQAYTQYGGKRPFGVSFLYAGWDDRYGYQLYQSDPSGNYGGWKA 161 (249)
T ss_pred cHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHhhccCcCCCceeeeeeceecCcceEEEecCCCCCccccce
Confidence 99999999999999999999999999999999999999999999999999999999999988899999999999999999
Q ss_pred EeeCCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhccc-CCCCcEEEEEEEcCCC--cEEEcCHHHHHHHHHhh
Q 026223 161 TSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQED-FKASEIEVGVVSKENP--EFRVLSIEEIDEHLTAI 237 (241)
Q Consensus 161 ~aiG~gs~~~~~~Le~~~~~~~~~s~~ea~~la~~~l~~~~~~d-~~~~~iei~ii~~~~~--~~k~l~~~ei~~~l~~i 237 (241)
.|+|.++..++..|+.-|++ ..++++||.++|++.|....+.. +.+..+||+.++++.. .++.+.++||.++++++
T Consensus 162 ~ciG~N~~Aa~s~Lkqdykd-d~~~~~eA~~laikvL~kt~d~~~lt~eklEia~~~k~~~k~v~~i~~~~ev~kll~k~ 240 (249)
T KOG0178|consen 162 TCIGANSGAAQSMLKQDYKD-DENDLEEAKALAIKVLSKTLDSGSLTAEKLEIATITKDCNKTVLKILKKDEVLKLLEKY 240 (249)
T ss_pred eeeccchHHHHHHHHhhhcc-ccccHHHHHHHHHHHHHhhcccCCCChhheEEEEEEecCCceEEEecCHHHHHHHHHHh
Confidence 99999999999999998753 45679999999999999999876 5556899999998754 27889999999999987
Q ss_pred hc
Q 026223 238 SE 239 (241)
Q Consensus 238 ~~ 239 (241)
.+
T Consensus 241 ~~ 242 (249)
T KOG0178|consen 241 HE 242 (249)
T ss_pred hh
Confidence 63
No 20
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=100.00 E-value=3.7e-47 Score=317.57 Aligned_cols=205 Identities=20% Similarity=0.264 Sum_probs=189.9
Q ss_pred CCceEEEEEcCCEEEEEEeccCC-CCcccCCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Q 026223 30 AGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDV 108 (241)
Q Consensus 30 ~G~t~igi~~~dgVvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 108 (241)
+|+|+|||+++||||||+|++.+ ++++.+++.+|||+|+++++|+++|+.+|++.+.+++|.+++.|+++++++|+++.
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~ 80 (219)
T TIGR03690 1 HGTTIVALTYPGGVLMAGDRRATQGNMIASRDVEKVYPTDEYSAVGIAGTAGLAIELVRLFQVELEHYEKIEGVPLTLDG 80 (219)
T ss_pred CCcEEEEEEECCEEEEEECCccccCcEEEcCCcceEEEcCCcEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 38999999999999999999999 68988889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccCccccceeeEEEEEcCC-CCcEEEEECCCc-ceeeeeEEeeCCChHHHHHHHHhhccCCCCCCH
Q 026223 109 LAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEE-CGPRLFKCDPAG-HFFGHKATSAGLKEQEAINFLEKKMKNDPAFTF 186 (241)
Q Consensus 109 la~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~-~gp~Ly~iDp~G-~~~~~~~~aiG~gs~~~~~~Le~~~~~~~~~s~ 186 (241)
++++|++++|.++ .+.+|||++++||+|||++ ++|+||++||+| ++..++++|+|+|+.+++++||+.| +++||.
T Consensus 81 la~~ls~~~~~~~-~~~~rp~~v~~iiaG~D~~~~~~~Ly~~Dp~G~~~~~~~~~a~G~g~~~a~~~Le~~~--~~~ms~ 157 (219)
T TIGR03690 81 KANRLAAMVRGNL-PAAMQGLAVVPLLAGYDLDAGAGRIFSYDVTGGRYEERGYHAVGSGSVFAKGALKKLY--SPDLDE 157 (219)
T ss_pred HHHHHHHHHHhhh-hhccCCceEEEEEEEECCCCCCcEEEEEeCCCCeeecCCeEEEeccHHHHHHHHHhcC--CCCcCH
Confidence 9999999999887 4568999999999999964 679999999999 5777799999999999999999986 689999
Q ss_pred HHHHHHHHHHHHHhhcccCCCCc--------EEEEEEEcCCCcEEEcCHHHHHHHHHhhhc
Q 026223 187 QETVQTAISTLQSVLQEDFKASE--------IEVGVVSKENPEFRVLSIEEIDEHLTAISE 239 (241)
Q Consensus 187 ~ea~~la~~~l~~~~~~d~~~~~--------iei~ii~~~~~~~k~l~~~ei~~~l~~i~~ 239 (241)
+||++++++||..+.++|..+++ ++|++|++++ |++++++||+++++++.+
T Consensus 158 eeai~l~~~al~~~~~~d~~s~~~~~~~~~~~ei~ii~~~g--~~~l~~~ei~~~~~~~~~ 216 (219)
T TIGR03690 158 DDALRVAVEALYDAADDDSATGGPDLVRGIYPTVVVITADG--ARRVPESELEELARAIVE 216 (219)
T ss_pred HHHHHHHHHHHHHHHhcccccCCcccccccccEEEEEccCc--eEEcCHHHHHHHHHHHHh
Confidence 99999999999999999976553 3899998664 999999999999999875
No 21
>KOG0863 consensus 20S proteasome, regulatory subunit alpha type PSMA1/PRE5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-47 Score=308.53 Aligned_cols=226 Identities=32% Similarity=0.553 Sum_probs=212.1
Q ss_pred CCCCccceecCCCceeEE-----EEccCCceEEEEEcCCEEEEEEeccCCCCcccCCCcceeEEecCcEEEEEecchHHH
Q 026223 8 GYDRHITIFSPEGRLFQV-----AVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADA 82 (241)
Q Consensus 8 ~yd~~~t~fsp~G~l~Q~-----a~~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~ 82 (241)
-||..+|+|||+|||+|| |+| .|++.||+|.++..||++-++..+.|- +.++|||+|++|++++++|+++|+
T Consensus 5 qyd~d~t~wsPqGrl~QvEya~Eavk-qGsatVGLks~thaVLvAl~r~~seLs--s~QkKi~~iD~h~g~siAGLt~Da 81 (264)
T KOG0863|consen 5 QYDNDVTTWSPQGRLHQVEYAMEAVK-QGSATVGLKSRTHAVLVALKRAQSELS--SHQKKIFKIDDHIGISIAGLTADA 81 (264)
T ss_pred cccCceeEECCcceehHHHHHHHHHh-cccceEeecccceEEEeeeccchhHHH--HhhheeEecccccceEEeccCcch
Confidence 699999999999999999 898 599999999999999999998877763 467999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcceeeeeEEe
Q 026223 83 RTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATS 162 (241)
Q Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~~~~a 162 (241)
+.|.+++|.+|..+++.|++++|+..+...|++.+|..||+.+.|||||.++++|+|+ .||+||++.|+|++.++++.+
T Consensus 82 rvl~~Ylr~ec~~~~~~~~r~~pv~rl~~~l~~k~q~~Tq~ygrRpYGVGllv~gYDe-~G~hl~e~~Psg~v~e~~g~s 160 (264)
T KOG0863|consen 82 RVLSRYLRQECLNSRFIYGRPLPVLRLVEDLGDKAQENTQRYGRRPYGVGLLVAGYDE-SGPHLYEFCPSGNVFECKGMS 160 (264)
T ss_pred HHHHHHHHHHHhhhhhccCCcccHHHHHHHHHHHHhhhhhhhCCccccceEEEEeecC-CCceeEEEcCCccEEEEeeee
Confidence 9999999999999999999999999999999999999999999999999999999997 899999999999999999999
Q ss_pred eCCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhcc--cCCCCcEEEEEEEcCCCcEEEcCHHHHHHHHHhhh
Q 026223 163 AGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQE--DFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAIS 238 (241)
Q Consensus 163 iG~gs~~~~~~Le~~~~~~~~~s~~ea~~la~~~l~~~~~~--d~~~~~iei~ii~~~~~~~k~l~~~ei~~~l~~i~ 238 (241)
||+.++.++++||++...+++++.||.+..++.||+..... ++...+++|+|+.++.+ |..++.+++.+++....
T Consensus 161 IGsRSQsARTyLEr~~e~f~~~~~eELI~~gi~Alr~tlp~de~lt~~nvsI~Ivgkd~p-f~~~d~~~~~k~~~~~~ 237 (264)
T KOG0863|consen 161 IGSRSQSARTYLERNLEEFEDSSPEELIKHGIMALRETLPEDEDLTGENVSIAIVGKDEP-FTILDQKDVAKYVDLFK 237 (264)
T ss_pred cccchhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCcccccccceeEEEEEeCCCc-eEeecHHHHHHHHHHhh
Confidence 99999999999999987778999999999999999999975 46666999999999987 99999999998765443
No 22
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.5e-46 Score=307.91 Aligned_cols=191 Identities=19% Similarity=0.252 Sum_probs=177.3
Q ss_pred CCceEEEEEcCCEEEEEEeccCC-CCcccCCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHH-HHHHHhCCCCCHH
Q 026223 30 AGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAA-EFRFKYGYEMPVD 107 (241)
Q Consensus 30 ~G~t~igi~~~dgVvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~-~~~~~~~~~~~~~ 107 (241)
+|+|+|||+++||||||+|+|.+ ++++.+++.+|||+|+++++++++|+.+|++.+.+++|.+++ .|++.++.+|+++
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 80 (197)
T cd03760 1 TGTSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVGDNTLLGASGDYADFQYLKRLLDQLVIDDECLDDGHSLSPK 80 (197)
T ss_pred CCceEEEEEeCCcEEEEEcCcccccceeecCCCCcEEEecCcEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence 48999999999999999999999 899998999999999999999999999999999999999987 4668899999999
Q ss_pred HHHHHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcceeeeeEEeeCCChHHHHHHHHhhccCCCCCCHH
Q 026223 108 VLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQ 187 (241)
Q Consensus 108 ~la~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~~~~aiG~gs~~~~~~Le~~~~~~~~~s~~ 187 (241)
.++++|++++ |++++++|||++++||||||++++|+||++||.|++.+++++|+|+|+.+++++||+.|+.+++||+|
T Consensus 81 ~la~~i~~~~--y~~~~~~rP~~v~~iiaG~D~~~gp~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~ms~e 158 (197)
T cd03760 81 EIHSYLTRVL--YNRRSKMNPLWNTLVVGGVDNEGEPFLGYVDLLGTAYEDPHVATGFGAYLALPLLREAWEKKPDLTEE 158 (197)
T ss_pred HHHHHHHHHH--HHHhhcCCCceEEEEEEEEcCCCCEEEEEEcCCccEEECCEeEEccHHHHHHHHHHhhcCCCCCCCHH
Confidence 9999999986 88888899999999999999757899999999999999999999999999999999997433389999
Q ss_pred HHHHHHHHHHHHhhcccCCCC-cEEEEEEEcCCCcEEE
Q 026223 188 ETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRV 224 (241)
Q Consensus 188 ea~~la~~~l~~~~~~d~~~~-~iei~ii~~~~~~~k~ 224 (241)
||++++++||+.+.+||..++ +++|++|++++ +++
T Consensus 159 ea~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g--~~~ 194 (197)
T cd03760 159 EARALIEECMKVLYYRDARSINKYQIAVVTKEG--VEI 194 (197)
T ss_pred HHHHHHHHHHHHHHHhccccCCceEEEEECCCC--EEe
Confidence 999999999999999997766 79999999886 544
No 23
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=100.00 E-value=4e-46 Score=315.61 Aligned_cols=205 Identities=16% Similarity=0.204 Sum_probs=189.9
Q ss_pred eEEEEccCCceEEEEEcCCEEEEEEeccCC-CCcccCCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhC
Q 026223 23 FQVAVKAAGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYG 101 (241)
Q Consensus 23 ~Q~a~~~~G~t~igi~~~dgVvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~ 101 (241)
.|+.++ +|+|+|||+++||||||+|+|.+ +.++.+++.+||++|+++++++++|+.+|++.|.+++|.+++.|+++++
T Consensus 32 ~~~~~~-~G~T~IgIk~kdgVvlAaD~r~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~g 110 (247)
T PTZ00488 32 KAIEFA-HGTTTLAFKYGGGIIIAVDSKATAGPYIASQSVKKVIEINPTLLGTMAGGAADCSFWERELAMQCRLYELRNG 110 (247)
T ss_pred cccccC-CCceEEEEEeCCEEEEEEecCcccCCEEEcCCcCceEEcCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHC
Confidence 345677 69999999999999999999999 7888889999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhhhccCccccce--eeEEEEEcCCCCcEEEEECCCcceeeeeEEeeCCChHHHHHHHHhhcc
Q 026223 102 YEMPVDVLAKWIADKSQVYTQHAYMRPLGV--VAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMK 179 (241)
Q Consensus 102 ~~~~~~~la~~ls~~~~~~t~~~~~rP~~v--~~iv~G~d~~~gp~Ly~iDp~G~~~~~~~~aiG~gs~~~~~~Le~~~~ 179 (241)
++|+++.++++|++++|.+ |||++ ++||||||+ +||+||++||.|++.+++++|+|+|+.+++++||+.|
T Consensus 111 ~~isv~~la~~ls~~l~~~------R~~~~~v~~iiaG~D~-~gp~Ly~vDp~Gs~~~~~~~a~G~gs~~~~~~Le~~~- 182 (247)
T PTZ00488 111 ELISVAAASKILANIVWNY------KGMGLSMGTMICGWDK-KGPGLFYVDNDGTRLHGNMFSCGSGSTYAYGVLDAGF- 182 (247)
T ss_pred CCCCHHHHHHHHHHHHHhc------CCCCeeEEEEEEEEeC-CCCEEEEEcCCcceeecCCEEEccCHHHHHHHHHhcC-
Confidence 9999999999999999754 45554 589999996 7899999999999999999999999999999999996
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhcccCCCC-cEEEEEEEcCCCcEEEcCHHHHHHHHHhhhc
Q 026223 180 NDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSIEEIDEHLTAISE 239 (241)
Q Consensus 180 ~~~~~s~~ea~~la~~~l~~~~~~d~~~~-~iei~ii~~~~~~~k~l~~~ei~~~l~~i~~ 239 (241)
+++||.+||++++++||+.+.+||..++ +++|++|++++ ++.++++||+++++++++
T Consensus 183 -k~dms~eEai~l~~kal~~~~~Rd~~sg~~~ei~iI~k~g--~~~l~~~ei~~~l~~~~~ 240 (247)
T PTZ00488 183 -KWDLNDEEAQDLGRRAIYHATFRDAYSGGAINLYHMQKDG--WKKISADDCFDLHQKYAA 240 (247)
T ss_pred -cCCCCHHHHHHHHHHHHHHHHHhccccCCCeEEEEEcCCc--cEECCHHHHHHHHHHHhh
Confidence 6799999999999999999999997776 89999999775 999999999999999874
No 24
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=8.5e-46 Score=303.77 Aligned_cols=187 Identities=17% Similarity=0.278 Sum_probs=176.0
Q ss_pred ceEEEEEcCCEEEEEEeccCC-CCcccCCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026223 32 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 110 (241)
Q Consensus 32 ~t~igi~~~dgVvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 110 (241)
+|+|||+++||||||+|+|.+ +.++.+++.+|||+|++++++++||+.+|++.+.+++|.+++.|+++++++++++.++
T Consensus 2 ~t~igi~~~dgVvlaad~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la 81 (193)
T cd03758 2 ETLIGIKGKDFVILAADTSAARSILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQKNIQLYKMRNGYELSPKAAA 81 (193)
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEecCcccEEEeCCCeEEEEccchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 589999999999999999998 7778889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcceeeeeEEeeCCChHHHHHHHHhhccCCCCCCHHHHH
Q 026223 111 KWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETV 190 (241)
Q Consensus 111 ~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~~~~aiG~gs~~~~~~Le~~~~~~~~~s~~ea~ 190 (241)
+++++++|.|++. + |||++++||+|||++++|+||++||+|++.+++++|+|+|+.+++++||+.| +++||.|||+
T Consensus 82 ~~l~~~~~~~~~~-~-rP~~~~~li~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~--~~~ms~eeai 157 (193)
T cd03758 82 NFTRRELAESLRS-R-TPYQVNLLLAGYDKVEGPSLYYIDYLGTLVKVPYAAHGYGAYFCLSILDRYY--KPDMTVEEAL 157 (193)
T ss_pred HHHHHHHHHHhhc-C-CCeEEEEEEEEEcCCCCcEEEEECCCcceEECCeeEEeecHHHHHHHHHhcc--CCCCCHHHHH
Confidence 9999999988754 3 8999999999999767899999999999999999999999999999999996 5899999999
Q ss_pred HHHHHHHHHhhcccCCCC-cEEEEEEEcCCCcEEE
Q 026223 191 QTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRV 224 (241)
Q Consensus 191 ~la~~~l~~~~~~d~~~~-~iei~ii~~~~~~~k~ 224 (241)
+++.+||+.+.+||..++ +++|++|++++ +++
T Consensus 158 ~l~~~a~~~~~~rd~~~~~~i~i~ii~~~g--~~~ 190 (193)
T cd03758 158 ELMKKCIKELKKRFIINLPNFTVKVVDKDG--IRD 190 (193)
T ss_pred HHHHHHHHHHHHhccccCCceEEEEEcCCC--eEe
Confidence 999999999999998776 79999999886 554
No 25
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.7e-45 Score=302.56 Aligned_cols=190 Identities=20% Similarity=0.274 Sum_probs=174.2
Q ss_pred CCceEEEEEcCCEEEEEEeccCCCCccc-CCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Q 026223 30 AGVTSIGVRGKDSVCVVTQKKVPDKLLD-HTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDV 108 (241)
Q Consensus 30 ~G~t~igi~~~dgVvla~d~~~~~~l~~-~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 108 (241)
+|+|+|||+++||||||+|++.+.+++. .++.+|||+|+++++|++||+.+|++.+.+++|.+++.|+++++++|+++.
T Consensus 2 ~G~t~igik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 81 (195)
T cd03759 2 NGGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQKLRFRVNLYRLREEREIKPKT 81 (195)
T ss_pred CCceEEEEEcCCEEEEEEccccccCCEeEecCCCeEEEeCCCEEEEccchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 4999999999999999999999866655 557899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcceeeee-EEeeCCChHHHHHHHHhhccCCCCCCHH
Q 026223 109 LAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHK-ATSAGLKEQEAINFLEKKMKNDPAFTFQ 187 (241)
Q Consensus 109 la~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~~-~~aiG~gs~~~~~~Le~~~~~~~~~s~~ 187 (241)
++++|++++ |+++ .|||++++||+|||++++|+||++||.|++.++. ++|+|+|++.++++||+.| +++||.+
T Consensus 82 la~~l~~~l--y~~r--~~P~~v~~ii~G~D~~~~p~Ly~~D~~G~~~~~~~~~a~G~g~~~~~~~Le~~~--~~~~s~~ 155 (195)
T cd03759 82 FSSLISSLL--YEKR--FGPYFVEPVVAGLDPDGKPFICTMDLIGCPSIPSDFVVSGTASEQLYGMCESLW--RPDMEPD 155 (195)
T ss_pred HHHHHHHHH--HHhc--CCCceEEEEEEEEcCCCCEEEEEEcCCCcccccCCEEEEcccHHHHHHHHHhcc--CCCCCHH
Confidence 999999998 5553 5799999999999976789999999999998886 9999999999999999996 6899999
Q ss_pred HHHHHHHHHHHHhhcccCCCC-cEEEEEEEcCCCcEEEc
Q 026223 188 ETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVL 225 (241)
Q Consensus 188 ea~~la~~~l~~~~~~d~~~~-~iei~ii~~~~~~~k~l 225 (241)
||++++++||+.+.+||..++ +++|++|++++...+.|
T Consensus 156 ea~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g~~~~~~ 194 (195)
T cd03759 156 ELFETISQALLSAVDRDALSGWGAVVYIITKDKVTTRTL 194 (195)
T ss_pred HHHHHHHHHHHHHHhhCcccCCceEEEEEcCCcEEEEec
Confidence 999999999999999997776 79999999987654443
No 26
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.8e-45 Score=298.21 Aligned_cols=185 Identities=17% Similarity=0.224 Sum_probs=173.9
Q ss_pred ceEEEEEcCCEEEEEEeccCC-CCcccCCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026223 32 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 110 (241)
Q Consensus 32 ~t~igi~~~dgVvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 110 (241)
+|+|||+++||||||+|++.+ +.++.+++.+|||+|++|++|+++|+.+|++.|.+++|.+++.|+++++++|+++.++
T Consensus 1 tT~igi~~kdgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i~~~~la 80 (188)
T cd03761 1 TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCQYWERVLGRECRLYELRNKERISVAAAS 80 (188)
T ss_pred CcEEEEEECCEEEEEEcCCccCCcEEEcCCcceEEEccCcEEEEeCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 589999999999999999999 5777788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcceeeeeEEeeCCChHHHHHHHHhhccCCCCCCHHHHH
Q 026223 111 KWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETV 190 (241)
Q Consensus 111 ~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~~~~aiG~gs~~~~~~Le~~~~~~~~~s~~ea~ 190 (241)
+++++++|.|++ .||++++||+|||+ +||+||++||.|++.+++++|+|+|+.+++++||+.| +++||.|||+
T Consensus 81 ~~ls~~l~~~~~----~~~~v~~li~G~D~-~g~~L~~~dp~G~~~~~~~~a~G~g~~~~~~~Le~~~--~~~~s~eea~ 153 (188)
T cd03761 81 KLLSNMLYQYKG----MGLSMGTMICGWDK-TGPGLYYVDSDGTRLKGDLFSVGSGSTYAYGVLDSGY--RYDLSVEEAY 153 (188)
T ss_pred HHHHHHHHhcCC----CCeEEEEEEEEEeC-CCCEEEEEcCCceEEEcCeEEEcccHHHHHHHHHhcC--CCCCCHHHHH
Confidence 999999998753 48999999999996 7999999999999999999999999999999999996 6899999999
Q ss_pred HHHHHHHHHhhcccCCCC-cEEEEEEEcCCCcEEEc
Q 026223 191 QTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVL 225 (241)
Q Consensus 191 ~la~~~l~~~~~~d~~~~-~iei~ii~~~~~~~k~l 225 (241)
+++++||+.+.+||..++ +++|++|++++ ++++
T Consensus 154 ~l~~~~l~~~~~rd~~sg~~~~v~ii~~~g--~~~~ 187 (188)
T cd03761 154 DLARRAIYHATHRDAYSGGNVNLYHVREDG--WRKI 187 (188)
T ss_pred HHHHHHHHHHHHhcccCCCCeEEEEEcCCc--eEEc
Confidence 999999999999998777 79999999886 6654
No 27
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7.6e-45 Score=302.23 Aligned_cols=193 Identities=17% Similarity=0.323 Sum_probs=176.1
Q ss_pred EccCCceEEEEEcCCEEEEEEeccCCCCc-ccCCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 026223 27 VKAAGVTSIGVRGKDSVCVVTQKKVPDKL-LDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMP 105 (241)
Q Consensus 27 ~~~~G~t~igi~~~dgVvla~d~~~~~~l-~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 105 (241)
++ +|+|+|||+++||||||+|++.+.++ +..++.+|||+|+++++|++||+.+|++.+.+++|.+++.|+++++++++
T Consensus 5 ~~-~G~Tvigik~~dgVvlaaD~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~i~ 83 (212)
T cd03757 5 TD-NGGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLTDKCVLGSSGFQADILALTKRLKARIKMYKYSHNKEMS 83 (212)
T ss_pred cC-CCccEEEEEcCCEEEEEECCccccCCEeEeCCCCeEEEcCCCEEEEccchHHHHHHHHHHHHHHHHHHhHHhCCCCC
Confidence 45 59999999999999999999999444 55788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcceeeeeEEeeCCChHHHHHHHHhhcc------
Q 026223 106 VDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMK------ 179 (241)
Q Consensus 106 ~~~la~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~~~~aiG~gs~~~~~~Le~~~~------ 179 (241)
++.++++|++++ |++ +.|||++++||||||++++|+||.+||.|++.+++++|+|+|+.+++++||+.|+
T Consensus 84 ~~~la~~ls~~l--y~~--R~~P~~~~~iiaG~D~~~~p~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ 159 (212)
T cd03757 84 TEAIAQLLSTIL--YSR--RFFPYYVFNILAGIDEEGKGVVYSYDPVGSYERETYSAGGSASSLIQPLLDNQVGRKNQNN 159 (212)
T ss_pred HHHHHHHHHHHH--Hhh--cCCCeEEEEEEEEEcCCCCEEEEEEcCccCeeecCEEEEeecHHHHHHHHHHHHHhhccCc
Confidence 999999999999 433 3579999999999997678999999999999999999999999999999999974
Q ss_pred -CCCCCCHHHHHHHHHHHHHHhhcccCCCC-cEEEEEEEcCCCcEEE
Q 026223 180 -NDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRV 224 (241)
Q Consensus 180 -~~~~~s~~ea~~la~~~l~~~~~~d~~~~-~iei~ii~~~~~~~k~ 224 (241)
++++||++||++++.+||+.+.+||..++ +++|++|++++...+.
T Consensus 160 ~~~~~ms~eea~~l~~~~l~~~~~rd~~sg~~i~i~iit~~g~~~~~ 206 (212)
T cd03757 160 VERTPLSLEEAVSLVKDAFTSAAERDIYTGDSLEIVIITKDGIEEET 206 (212)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCcccCCCEEEEEEcCCCEEEEe
Confidence 34899999999999999999999997776 7999999999754443
No 28
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=3.2e-44 Score=292.55 Aligned_cols=182 Identities=26% Similarity=0.469 Sum_probs=173.5
Q ss_pred CceEEEEEcCCEEEEEEeccCC-CCcccCCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 026223 31 GVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVL 109 (241)
Q Consensus 31 G~t~igi~~~dgVvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 109 (241)
|+|+|||+++||||||+|++.+ ++++.+++.+|||+|+++++++++|..+|++.+.++++.+++.|+..++++++++.+
T Consensus 1 G~t~igi~~~dgVvla~d~~~~~~~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
T TIGR03634 1 GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKAL 80 (185)
T ss_pred CCcEEEEEeCCEEEEEEcCcccCCCEEecCCcccEEEcCCCEEEEcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 7899999999999999999998 888888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcceeeeeEEeeCCChHHHHHHHHhhccCCCCCCHHHH
Q 026223 110 AKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQET 189 (241)
Q Consensus 110 a~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~~~~aiG~gs~~~~~~Le~~~~~~~~~s~~ea 189 (241)
+++|++.+|.+ ++|||++++||+|||+ +||+||.+||+|++.+++++|+|+|+.+++++||+.| +++||++||
T Consensus 81 a~~l~~~~~~~----~~rP~~v~~ivaG~d~-~g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~--~~~~s~~ea 153 (185)
T TIGR03634 81 ATLLSNILNSN----RFFPFIVQLLVGGVDE-EGPHLYSLDPAGGIIEDDYTATGSGSPVAYGVLEDEY--REDMSVEEA 153 (185)
T ss_pred HHHHHHHHHhc----CCCCeEEEEEEEEEeC-CCCEEEEECCCCCeEECCEEEEcCcHHHHHHHHHhcC--CCCCCHHHH
Confidence 99999999765 6899999999999997 6899999999999999999999999999999999996 589999999
Q ss_pred HHHHHHHHHHhhcccCCCC-cEEEEEEEcCC
Q 026223 190 VQTAISTLQSVLQEDFKAS-EIEVGVVSKEN 219 (241)
Q Consensus 190 ~~la~~~l~~~~~~d~~~~-~iei~ii~~~~ 219 (241)
++++++||+.+.+||..++ +++|++|++++
T Consensus 154 ~~l~~~~l~~~~~r~~~~~~~~~v~ii~~~g 184 (185)
T TIGR03634 154 KKLAVRAIKSAIERDVASGNGIDVAVITKDG 184 (185)
T ss_pred HHHHHHHHHHHHHhcccCCCCEEEEEEcCCC
Confidence 9999999999999997776 79999999876
No 29
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.2e-43 Score=288.33 Aligned_cols=185 Identities=25% Similarity=0.433 Sum_probs=174.9
Q ss_pred ceEEEEEcCCEEEEEEeccCC-CCcccCCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026223 32 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 110 (241)
Q Consensus 32 ~t~igi~~~dgVvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 110 (241)
+|+|||+++||||||+|+|.+ +.++.+++.+||++|+++++++++|+.+|++.+.+.+|.+++.|++.++++++++.++
T Consensus 1 tt~iai~~~dgvvia~d~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (188)
T cd03764 1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILKAEARLYELRRGRPMSIKALA 80 (188)
T ss_pred CcEEEEEeCCEEEEEEccccccCCEEecCCcccEEEccCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 589999999999999999999 6888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcceeeeeEEeeCCChHHHHHHHHhhccCCCCCCHHHHH
Q 026223 111 KWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETV 190 (241)
Q Consensus 111 ~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~~~~aiG~gs~~~~~~Le~~~~~~~~~s~~ea~ 190 (241)
+++++.+|.+ ++|||+|++||||||+ ++|+||.+||+|++.+++++|+|+|+++++++||+.| +++|+++||+
T Consensus 81 ~~i~~~~~~~----~~~P~~~~~lvaG~d~-~~~~ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~--~~~~~~~ea~ 153 (188)
T cd03764 81 TLLSNILNSS----KYFPYIVQLLIGGVDE-EGPHLYSLDPLGSIIEDKYTATGSGSPYAYGVLEDEY--KEDMTVEEAK 153 (188)
T ss_pred HHHHHHHHhc----CCCCcEEEEEEEEEeC-CCCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHhcC--CCCCCHHHHH
Confidence 9999999764 5789999999999997 7899999999999999999999999999999999986 6899999999
Q ss_pred HHHHHHHHHhhcccCCCC-cEEEEEEEcCCCcEEEc
Q 026223 191 QTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVL 225 (241)
Q Consensus 191 ~la~~~l~~~~~~d~~~~-~iei~ii~~~~~~~k~l 225 (241)
+++++||+.+.+||..++ +++|+++++++ +++|
T Consensus 154 ~l~~~~l~~~~~rd~~~~~~i~i~iv~~~g--~~~~ 187 (188)
T cd03764 154 KLAIRAIKSAIERDSASGDGIDVVVITKDG--YKEL 187 (188)
T ss_pred HHHHHHHHHHHhhcCCCCCcEEEEEECCCC--eEeC
Confidence 999999999999997776 79999999886 7765
No 30
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=100.00 E-value=1.5e-43 Score=296.57 Aligned_cols=198 Identities=16% Similarity=0.220 Sum_probs=176.9
Q ss_pred EEccCCceEEEEEcCCEEEEEEeccCCCCcccCCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhC-CCC
Q 026223 26 AVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYG-YEM 104 (241)
Q Consensus 26 a~~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~-~~~ 104 (241)
|++ .|+|+|||+++||||||+|++. ++.+|||+|+|+++|+++|+.+|++.+++.++.+++.|++.++ .++
T Consensus 23 av~-~g~T~VGIk~kdgVVLaaek~~-------~~~~KI~~I~d~ig~~~sG~~~D~~~lv~~~r~~a~~~~~~~~~~~~ 94 (228)
T TIGR03691 23 GIA-RGRSVVVLTYADGILFVAENPS-------RSLHKISELYDRIGFAAVGKYNEFENLRRAGIRYADMRGYSYDRRDV 94 (228)
T ss_pred HHH-cCCcEEEEEeCCeEEEEEecCC-------CCcCcEEEecCCEEEEEcCCHHHHHHHHHHHHHHHHHHhhhcCCCCc
Confidence 777 5999999999999999999973 4679999999999999999999999999999999999999998 689
Q ss_pred CHHHHHHHHHHHHHHhhhccCccccceeeEEEEEcC-CCCcEEEEECCCcceeeee-EEeeCCChHHHHHHHHhhccCCC
Q 026223 105 PVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDE-ECGPRLFKCDPAGHFFGHK-ATSAGLKEQEAINFLEKKMKNDP 182 (241)
Q Consensus 105 ~~~~la~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~-~~gp~Ly~iDp~G~~~~~~-~~aiG~gs~~~~~~Le~~~~~~~ 182 (241)
+++.+++.+++.++.++ +++.|||+|++|++|||+ ++||+||.+||+|++.+++ ++|+|+|++.++++||++| ++
T Consensus 95 ~v~~la~~~tq~~~~~~-~~~~RP~gvs~Li~G~d~~~~gp~Ly~vDpsG~~~~~~~~~aiG~gs~~a~~~Lek~y--~~ 171 (228)
T TIGR03691 95 TGRGLANAYAQTLGTIF-TEQQKPYEVEICVAEVGETPDQDQLYRITFDGSIVDERGFVVMGGTTEPIATALKESY--RD 171 (228)
T ss_pred cHHHHHHHHHhhccccc-ccccCcceEEEEEEEEcCCCCCCEEEEECCCCCceeccceEEECCChHHHHHHHHHhc--CC
Confidence 99999988887776665 467899999999999985 4789999999999999976 8999999999999999996 67
Q ss_pred CCCHHHHHHHHHHHHHHhhc--cc-CCCCcEEEEEEEcCC--CcEEEcCHHHHHHHH
Q 026223 183 AFTFQETVQTAISTLQSVLQ--ED-FKASEIEVGVVSKEN--PEFRVLSIEEIDEHL 234 (241)
Q Consensus 183 ~~s~~ea~~la~~~l~~~~~--~d-~~~~~iei~ii~~~~--~~~k~l~~~ei~~~l 234 (241)
+||++||++++++||+.+.+ ++ +...++||++|++++ +.|++|+++||+++|
T Consensus 172 ~ms~eeai~la~~aL~~~~~~~r~~~~~~~iEv~ii~k~~~~~~f~~l~~~ei~~~l 228 (228)
T TIGR03691 172 GLSLADALGLAVQALRAGGNGEKRELDAASLEVAVLDRSRPRRAFRRITGEALERLL 228 (228)
T ss_pred CCCHHHHHHHHHHHHHHHhccccccCCccceEEEEEeCCCCccceEECCHHHHHhhC
Confidence 99999999999999999964 43 555689999999653 359999999999874
No 31
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.9e-43 Score=296.40 Aligned_cols=185 Identities=12% Similarity=0.214 Sum_probs=169.4
Q ss_pred eEEEEEcCCEEEEEEeccCCCCcccCCCcceeEEec----CcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCC-CCCHH
Q 026223 33 TSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPIT----KYLGLLATGMTADARTLVQQARYEAAEFRFKYGY-EMPVD 107 (241)
Q Consensus 33 t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~----~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~-~~~~~ 107 (241)
=+|||+++||||||+|+|++++++..++.+|||+|+ +|++|+.||+.+|++.+.+++|.+++.|++++|+ +++++
T Consensus 2 ~~vGIk~kdGVVLaadkr~~~~l~~~~~~~KI~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~v~ 81 (236)
T cd03765 2 YCLGIKLDAGLVFASDSRTNAGVDNISTYRKMFVFSVPGERVIVLLTAGNLATTQAVISLLQRDLEDPEETNLLNAPTMF 81 (236)
T ss_pred eEEEEEeCCeEEEEEccCccCCCccccccceEEEecCCCCCEEEEEcCCcHHHHHHHHHHHHHHHHhhHHhhCCCCCCHH
Confidence 479999999999999999988877777899999998 8999999999999999999999999999999999 89999
Q ss_pred HHHHHHHHHHH-HhhhccC-----ccccceeeEEEEEcCCCCcEEEEECCCcceeee----eEEeeCCChHHHHHHHHhh
Q 026223 108 VLAKWIADKSQ-VYTQHAY-----MRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGH----KATSAGLKEQEAINFLEKK 177 (241)
Q Consensus 108 ~la~~ls~~~~-~~t~~~~-----~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~----~~~aiG~gs~~~~~~Le~~ 177 (241)
.+|++++++++ .++|..+ .|||+|++||+|||+++||+||++||+|++.++ +++|+|. +.+++++||++
T Consensus 82 ~la~~i~~~l~~~~~q~~~~~~~~~rp~gvslIigG~D~~~Gp~LY~idpsG~~~e~~a~~~~~AiG~-~~~a~~~Lek~ 160 (236)
T cd03765 82 DAARYVGETLREVQEQDREALKKAGIDFSASFILGGQIKGEEPRLFLIYPQGNFIEATPDTPFLQIGE-TKYGKPILDRV 160 (236)
T ss_pred HHHHHHHHHHHHHHhhcccccccCCcceEEEEEEEeEECCCCCEEEEECCCCCEEeecCCCceeeeCC-chhhHHHHHHh
Confidence 99999999854 4555554 489999999999996678999999999999998 5689996 69999999999
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHhhcccCCCC-cEEEEEEEcCCC
Q 026223 178 MKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENP 220 (241)
Q Consensus 178 ~~~~~~~s~~ea~~la~~~l~~~~~~d~~~~-~iei~ii~~~~~ 220 (241)
| +++||+|||+++|++||..+.+||..++ +|+|++|+++|.
T Consensus 161 y--k~~ms~eeai~la~~al~~a~~rd~~sg~~iev~vI~k~G~ 202 (236)
T cd03765 161 I--TPDTSLEDAAKCALVSMDSTMRSNLSVGPPLDLLVYERDSL 202 (236)
T ss_pred c--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEECCCe
Confidence 6 6799999999999999999999998777 799999999874
No 32
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=6.4e-43 Score=285.89 Aligned_cols=184 Identities=17% Similarity=0.263 Sum_probs=171.7
Q ss_pred ceEEEEEcCCEEEEEEeccCC-CCcccCCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026223 32 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 110 (241)
Q Consensus 32 ~t~igi~~~dgVvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 110 (241)
+|+|||+++||||||+|+|.+ +.++..++.+|||+|+++++|+++|+.+|++.+.+.+|.+++.|+++++++++++.++
T Consensus 1 tt~igi~~~dgvvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (189)
T cd03763 1 TTIVGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMISSNLELHRLNTGRKPRVVTAL 80 (189)
T ss_pred CeEEEEEECCeEEEEEcCCcccCceEEcCCccceEEecCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 589999999999999999999 5677788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcceeeeeEEeeCCChHHHHHHHHhhccCCCCCCHHHHH
Q 026223 111 KWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETV 190 (241)
Q Consensus 111 ~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~~~~aiG~gs~~~~~~Le~~~~~~~~~s~~ea~ 190 (241)
++|++.++.|. .||+|++||||||+ +||+||.+||.|++.+++++|+|+|+.+++++||+.| +|+||++||+
T Consensus 81 ~~l~~~l~~~~-----~p~~v~~ivaG~d~-~g~~ly~~d~~G~~~~~~~~a~G~~~~~~~~~L~~~~--~~~ls~~ea~ 152 (189)
T cd03763 81 TMLKQHLFRYQ-----GHIGAALVLGGVDY-TGPHLYSIYPHGSTDKLPFVTMGSGSLAAMSVLEDRY--KPDMTEEEAK 152 (189)
T ss_pred HHHHHHHHHcC-----CccceeEEEEeEcC-CCCEEEEECCCCCEEecCEEEEcCCHHHHHHHHHhhc--CCCCCHHHHH
Confidence 99999997662 29999999999996 6899999999999999999999999999999999996 6899999999
Q ss_pred HHHHHHHHHhhcccCCCC-cEEEEEEEcCCCcEEEc
Q 026223 191 QTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVL 225 (241)
Q Consensus 191 ~la~~~l~~~~~~d~~~~-~iei~ii~~~~~~~k~l 225 (241)
+++++||+.+.+||+.++ +++|++|++++ ++..
T Consensus 153 ~l~~~~l~~~~~rd~~~~~~~~v~ii~~~g--~~~~ 186 (189)
T cd03763 153 KLVCEAIEAGIFNDLGSGSNVDLCVITKDG--VEYL 186 (189)
T ss_pred HHHHHHHHHHHHhcCcCCCceEEEEEcCCc--EEEe
Confidence 999999999999998776 79999999986 5543
No 33
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=6.9e-43 Score=285.43 Aligned_cols=182 Identities=15% Similarity=0.226 Sum_probs=171.4
Q ss_pred ceEEEEEcCCEEEEEEeccCC-CCcccCCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026223 32 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 110 (241)
Q Consensus 32 ~t~igi~~~dgVvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 110 (241)
+|+|||+++||||||+|+|.+ +.++.+++.+|||+|+++++|+++|+.+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 ~t~igi~~~dgVvla~D~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~~a 80 (188)
T cd03762 1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVRYYLDMHSIELGEPPLVKTAA 80 (188)
T ss_pred CeEEEEEECCeEEEEEcccccCCceEEcCCcccEEEccCCEEEEecccHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHH
Confidence 589999999999999999999 6787788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcceeeeeEEeeCCChHHHHHHHHhhccCCCCCCHHHHH
Q 026223 111 KWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETV 190 (241)
Q Consensus 111 ~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~~~~aiG~gs~~~~~~Le~~~~~~~~~s~~ea~ 190 (241)
+++++++|.+ .|||++++||||+|++++|+||.+||.|++.+++++++|+|+.+++++||+.| +++||++||+
T Consensus 81 ~~l~~~~~~~-----~~~~~~~~ii~G~d~~~gp~ly~~d~~G~~~~~~~~~~G~g~~~~~~~Le~~~--~~~~s~~ea~ 153 (188)
T cd03762 81 SLFKNLCYNY-----KEMLSAGIIVAGWDEQNGGQVYSIPLGGMLIRQPFAIGGSGSTYIYGYVDANY--KPGMTLEECI 153 (188)
T ss_pred HHHHHHHHhc-----cccceeeEEEEEEcCCCCcEEEEECCCCCEEecCEEEEcccHHHHHHHHHhcC--CCCCCHHHHH
Confidence 9999999755 26999999999999767899999999999999999999999999999999986 6899999999
Q ss_pred HHHHHHHHHhhcccCCCC-cEEEEEEEcCCC
Q 026223 191 QTAISTLQSVLQEDFKAS-EIEVGVVSKENP 220 (241)
Q Consensus 191 ~la~~~l~~~~~~d~~~~-~iei~ii~~~~~ 220 (241)
+++++||+.+.+||+.++ +++|++|++++.
T Consensus 154 ~l~~~al~~~~~rd~~~~~~~~i~~i~~~g~ 184 (188)
T cd03762 154 KFVKNALSLAMSRDGSSGGVIRLVIITKDGV 184 (188)
T ss_pred HHHHHHHHHHHHhccccCCCEEEEEECCCCE
Confidence 999999999999998776 799999998863
No 34
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=100.00 E-value=2.2e-42 Score=282.39 Aligned_cols=184 Identities=33% Similarity=0.563 Sum_probs=173.2
Q ss_pred CCceEEEEEcCCEEEEEEeccCC-CCcc-cCCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Q 026223 30 AGVTSIGVRGKDSVCVVTQKKVP-DKLL-DHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVD 107 (241)
Q Consensus 30 ~G~t~igi~~~dgVvla~d~~~~-~~l~-~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~ 107 (241)
+|+|+|||+++||||||+|++.+ +..+ .++..+|||+|++++++++||+.+|++.+.++++.+++.|++.++.+++++
T Consensus 3 ~G~t~vgi~~~dgvvla~d~~~~~g~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~ 82 (190)
T PF00227_consen 3 NGTTVVGIKGKDGVVLAADKRISYGSKLRSPNTVDKIFKINDNIIIGFSGLTADFQYLIRRLREEAQEYRFSYGRPISPE 82 (190)
T ss_dssp TSBEEEEEEESSEEEEEEEEEEEETTEEEESSTSSSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTCHH
T ss_pred CCeEEEEEEECCEEEEEEccccccccccccccccceeeeccCcceeeccccccchHHHHhhhcccchhhhhccCccccch
Confidence 69999999999999999999999 5555 444479999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcceeee-eEEeeCCChHHHHHHHHhhccCCCCCCH
Q 026223 108 VLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGH-KATSAGLKEQEAINFLEKKMKNDPAFTF 186 (241)
Q Consensus 108 ~la~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~-~~~aiG~gs~~~~~~Le~~~~~~~~~s~ 186 (241)
.+++.+++.++.+++++++||+++++|++|||++++|+||.+||+|++.++ +++|+|+|+++++++||+.| +++||+
T Consensus 83 ~l~~~~~~~~~~~~~~~~~~p~~~~~li~G~d~~~~~~l~~vd~~G~~~~~~~~~aiG~g~~~~~~~l~~~~--~~~~~~ 160 (190)
T PF00227_consen 83 YLAKAIASLIQNYTYRSGRRPYGVSLLIAGYDEDGGPQLYSVDPSGSYIECKRFAAIGSGSQFAQPILEKLY--KPDLSL 160 (190)
T ss_dssp HHHHHHHHHHHHHHHHTTTSTTSEEEEEEEEETTTEEEEEEEETTSEEEEBSSEEEESTTHHHHHHHHHHHH--TTTSSH
T ss_pred hhhhhhHHHHhhhcccccccCccccceeeeeccccccceeeeccccccccccccccchhcchhhhHHHHhhc--cCCCCH
Confidence 999999999999999999999999999999998666999999999999999 79999999999999999997 689999
Q ss_pred HHHHHHHHHHHHHhhcccCCCC-cEEEEEE
Q 026223 187 QETVQTAISTLQSVLQEDFKAS-EIEVGVV 215 (241)
Q Consensus 187 ~ea~~la~~~l~~~~~~d~~~~-~iei~ii 215 (241)
+||++++++||+.+.++|..++ +++|++|
T Consensus 161 ~ea~~~~~~~l~~~~~~d~~~~~~~~v~vi 190 (190)
T PF00227_consen 161 EEAIELALKALKEAIDRDILSGDNIEVAVI 190 (190)
T ss_dssp HHHHHHHHHHHHHHHHHBTTSTSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhhCCccCCeEEEEEC
Confidence 9999999999999999997766 7999986
No 35
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.6e-41 Score=277.46 Aligned_cols=182 Identities=23% Similarity=0.411 Sum_probs=170.7
Q ss_pred ceEEEEEcCCEEEEEEeccCCCCccc-CCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026223 32 VTSIGVRGKDSVCVVTQKKVPDKLLD-HTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 110 (241)
Q Consensus 32 ~t~igi~~~dgVvla~d~~~~~~l~~-~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 110 (241)
+|+|||+++||||||+|++.+.++.. .++.+|||+|+++++++++|+.+|++.+.++++.+++.|+..++++++++.++
T Consensus 1 tt~i~i~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (189)
T cd01912 1 TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLKRNLRLYELRNGRELSVKAAA 80 (189)
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEEcCCcCcEEEccCCEEEEccccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 58999999999999999999955544 78999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcceeeeeEEeeCCChHHHHHHHHhhccCCCCCCHHHHH
Q 026223 111 KWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETV 190 (241)
Q Consensus 111 ~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~~~~aiG~gs~~~~~~Le~~~~~~~~~s~~ea~ 190 (241)
++++++++.+++ |||++++||||+|++++|+||.+||+|++.+++++|+|.++++++++||+.| +|+||++||+
T Consensus 81 ~~l~~~~~~~~~----~P~~~~~iv~G~d~~~~~~l~~id~~G~~~~~~~~a~G~~~~~~~~~Le~~~--~~~~s~~ea~ 154 (189)
T cd01912 81 NLLSNILYSYRG----FPYYVSLIVGGVDKGGGPFLYYVDPLGSLIEAPFVATGSGSKYAYGILDRGY--KPDMTLEEAV 154 (189)
T ss_pred HHHHHHHHhcCC----CCeEEEEEEEEEcCCCCeEEEEECCCCCeEecCEEEEcccHHHHHHHHHhcc--CCCCCHHHHH
Confidence 999999977643 7999999999999767899999999999999999999999999999999996 6899999999
Q ss_pred HHHHHHHHHhhcccCCCC-cEEEEEEEcCC
Q 026223 191 QTAISTLQSVLQEDFKAS-EIEVGVVSKEN 219 (241)
Q Consensus 191 ~la~~~l~~~~~~d~~~~-~iei~ii~~~~ 219 (241)
+++.+||+.+.++|..++ +++|++|++++
T Consensus 155 ~~~~~~l~~~~~~d~~~~~~~~v~vi~~~g 184 (189)
T cd01912 155 ELVKKAIDSAIERDLSSGGGVDVAVITKDG 184 (189)
T ss_pred HHHHHHHHHHHHhcCccCCcEEEEEECCCC
Confidence 999999999999987776 79999999886
No 36
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=100.00 E-value=5.4e-41 Score=272.35 Aligned_cols=180 Identities=40% Similarity=0.681 Sum_probs=168.8
Q ss_pred ceEEEEEcCCEEEEEEeccCCCCcc-cCCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026223 32 VTSIGVRGKDSVCVVTQKKVPDKLL-DHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 110 (241)
Q Consensus 32 ~t~igi~~~dgVvla~d~~~~~~l~-~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 110 (241)
+|+|||+++||||||+|++.+..+. ..++.+|||+|+++++++++|..+|++.+.+.++.++..|+++++++++++.++
T Consensus 1 tt~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (182)
T cd01906 1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLRKEAQLYRLRYGEPIPVEALA 80 (182)
T ss_pred CcEEEEEeCCEEEEEEecccCCcCeecCCCcceEEEECCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 5899999999999999999995444 478899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcceeeeeEEeeCCChHHHHHHHHhhccCCCCCCHHHHH
Q 026223 111 KWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETV 190 (241)
Q Consensus 111 ~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~~~~aiG~gs~~~~~~Le~~~~~~~~~s~~ea~ 190 (241)
+++++++|.++++ +|||++++||+|+|++++|+||.+||+|++.+++++|+|+|+.+++++||+.| +++||++||+
T Consensus 81 ~~l~~~~~~~~~~--~~p~~~~~lv~G~d~~~~~~Ly~id~~G~~~~~~~~a~G~g~~~~~~~L~~~~--~~~~s~~ea~ 156 (182)
T cd01906 81 KLLANLLYEYTQS--LRPLGVSLLVAGVDEEGGPQLYSVDPSGSYIEYKATAIGSGSQYALGILEKLY--KPDMTLEEAI 156 (182)
T ss_pred HHHHHHHHHhCCC--ccChheEEEEEEEeCCCCcEEEEECCCCCEeeccEEEECCCcHHHHHHHHHHc--cCCCCHHHHH
Confidence 9999999999875 79999999999999767999999999999999999999999999999999996 5789999999
Q ss_pred HHHHHHHHHhhcccCCCC-cEEEEEE
Q 026223 191 QTAISTLQSVLQEDFKAS-EIEVGVV 215 (241)
Q Consensus 191 ~la~~~l~~~~~~d~~~~-~iei~ii 215 (241)
+++++||+.+.++|..++ +++|+++
T Consensus 157 ~l~~~~l~~~~~~~~~~~~~~~i~ii 182 (182)
T cd01906 157 ELALKALKSALERDLYSGGNIEVAVI 182 (182)
T ss_pred HHHHHHHHHHHcccCCCCCCEEEEEC
Confidence 999999999999998665 7999875
No 37
>KOG0179 consensus 20S proteasome, regulatory subunit beta type PSMB1/PRE7 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.2e-37 Score=243.37 Aligned_cols=196 Identities=17% Similarity=0.325 Sum_probs=179.8
Q ss_pred EEccCCceEEEEEcCCEEEEEEeccCC-CCcccCCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCC
Q 026223 26 AVKAAGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEM 104 (241)
Q Consensus 26 a~~~~G~t~igi~~~dgVvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~ 104 (241)
... +|+|+|||++.|+.|+|+|+|.+ +-.|..+..+|||+++|+++++.||+++|+..|...++...+.|+..++..|
T Consensus 25 Y~~-NGGT~vaIaG~dFavvA~DTR~s~gy~I~sR~~~Ki~~l~D~~vl~~sGF~aD~l~L~k~i~~r~~~Y~~~h~k~m 103 (235)
T KOG0179|consen 25 YED-NGGTTVAIAGEDFAVVAGDTRMSSGYNINSRDQSKIFKLGDNIVLGSSGFYADTLALVKVIKSRIKQYEHDHNKKM 103 (235)
T ss_pred ccc-CCceEEEEcCCceEEEecccccccceeeeccccchheeccCceEEecccchhhHHHHHHHHHHHHHHHhhcccccc
Confidence 555 59999999999999999999999 6667788999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcceeeeeEEeeCCChHHHHHHHHhhccC----
Q 026223 105 PVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKN---- 180 (241)
Q Consensus 105 ~~~~la~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~~~~aiG~gs~~~~~~Le~~~~~---- 180 (241)
++..+|.+|+..+ | ..+..||.+..+|+|+|++++|.+|+.||-|++.+..+.|-|+++..++|+|+..+..
T Consensus 104 s~~s~A~lls~~L--Y--~kRFFPYYv~~ilaGiDeeGKG~VySyDPvGsyer~~~~AgGsa~~mI~PfLDnQi~~kn~~ 179 (235)
T KOG0179|consen 104 SIHSAAQLLSTIL--Y--SKRFFPYYVFNILAGIDEEGKGAVYSYDPVGSYERVTCRAGGSAASMIQPFLDNQIGHKNQN 179 (235)
T ss_pred cHHHHHHHHHHHH--h--hcccccceeeeeeecccccCceeEEeecCCcceeeeeeecCCcchhhhhhhhhhhccCcCcc
Confidence 9999999999999 4 3477899999999999998899999999999999999999999999999999976531
Q ss_pred -----CCCCCHHHHHHHHHHHHHHhhcccCCCC-cEEEEEEEcCCCcEEEcC
Q 026223 181 -----DPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLS 226 (241)
Q Consensus 181 -----~~~~s~~ea~~la~~~l~~~~~~d~~~~-~iei~ii~~~~~~~k~l~ 226 (241)
++.||+|+|++++.++|..+.+||+..| +++|+|+++++.+.+.++
T Consensus 180 ~e~~~~~~Ls~e~ai~lv~d~F~SAaERdI~tGD~l~i~I~tk~gV~~e~~~ 231 (235)
T KOG0179|consen 180 LENAERTPLSLERAIRLVKDAFTSAAERDIYTGDKLEICIITKDGVEVETLP 231 (235)
T ss_pred cccCcccccCHHHHHHHHHHHhhhhhhcccccCCcEEEEEEecCCEEEEeee
Confidence 3468999999999999999999999998 699999999986555544
No 38
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-37 Score=241.16 Aligned_cols=188 Identities=16% Similarity=0.275 Sum_probs=176.0
Q ss_pred eEEEEEcCCEEEEEEeccCC-CCcccCCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Q 026223 33 TSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAK 111 (241)
Q Consensus 33 t~igi~~~dgVvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~ 111 (241)
+++||++.|+|++|+|+... +-++.+++++|++.|++++.|+++|..+|+..+.+++++.++.|+.++|.+++|+.+|+
T Consensus 3 ~llGIkg~dfvilAsDt~~~~si~~~k~~~dK~~~ls~~~lm~~~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLSp~~aah 82 (200)
T KOG0177|consen 3 TLLGIKGPDFVILASDTSAARSILVLKDDHDKIHRLSDHILMATVGEAGDTVQFTEYIQKNIQLYKIRNGYELSPSAAAH 82 (200)
T ss_pred eEEEeecCCEEEEeecchhhcceEEecccccceEEeccceeeeeecCCCceehHHHHHHhhhhHHhhhcCCcCCHHHHHH
Confidence 78999999999999999988 66777889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcceeeeeEEeeCCChHHHHHHHHhhccCCCCCCHHHHHH
Q 026223 112 WIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQ 191 (241)
Q Consensus 112 ~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~~~~aiG~gs~~~~~~Le~~~~~~~~~s~~ea~~ 191 (241)
++.+.+.++.+ ..+||.|+++|||+|++.||.||++|..|+..+.++++.|.++.++.++|++.| +|+||.+||++
T Consensus 83 FtR~~La~~LR--sr~~yqV~~LvaGYd~~~gp~L~~iDyla~~~~vpy~~hGy~~~f~~sIlDr~Y--~pdmt~eea~~ 158 (200)
T KOG0177|consen 83 FTRRELAESLR--SRTPYQVNILVAGYDPEEGPELYYIDYLATLVSVPYAAHGYGSYFCLSILDRYY--KPDMTIEEALD 158 (200)
T ss_pred HHHHHHHHHHh--cCCCceEEEEEeccCCCCCCceeeehhhhhcccCCcccccchhhhhHHHHHhhh--CCCCCHHHHHH
Confidence 99999988863 467999999999999999999999999999999999999999999999999996 79999999999
Q ss_pred HHHHHHHHhhccc-CCCCcEEEEEEEcCCCcEEEcC
Q 026223 192 TAISTLQSVLQED-FKASEIEVGVVSKENPEFRVLS 226 (241)
Q Consensus 192 la~~~l~~~~~~d-~~~~~iei~ii~~~~~~~k~l~ 226 (241)
+..+|+.+..+|- ++-.+|.+.||+++| +++++
T Consensus 159 lmkKCv~El~kRlvin~~~f~v~IVdkdG--ir~~~ 192 (200)
T KOG0177|consen 159 LMKKCVLELKKRLVINLPGFIVKIVDKDG--IRKLD 192 (200)
T ss_pred HHHHHHHHHHHhcccCCCCcEEEEEcCCC--ceecc
Confidence 9999999999985 556699999999997 66654
No 39
>KOG0175 consensus 20S proteasome, regulatory subunit beta type PSMB5/PSMB8/PRE2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-36 Score=245.27 Aligned_cols=197 Identities=18% Similarity=0.213 Sum_probs=185.1
Q ss_pred CCceEEEEEcCCEEEEEEeccCC-CCcccCCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Q 026223 30 AGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDV 108 (241)
Q Consensus 30 ~G~t~igi~~~dgVvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 108 (241)
+|||++|++++.|||+|+|+|++ +++|....++||.+|+++++-..+|-++|++.+-+.+.++|+.|++++++.|++..
T Consensus 70 hGTTTLAF~f~~GvivAvDSRAs~G~YIasqtv~KVIeIn~ylLGTmAGgAADCqfWer~L~kecRL~eLRnkeriSVsa 149 (285)
T KOG0175|consen 70 HGTTTLAFKFKGGVIVAVDSRASAGSYIASQTVKKVIEINPYLLGTMAGGAADCQFWERVLAKECRLHELRNKERISVSA 149 (285)
T ss_pred CCceEEEEEecCcEEEEEeccccccceeechhhceeeeechhhhhcccCcchhhHHHHHHHHHHHHHHHHhcCcceehHH
Confidence 79999999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcceeeeeEEeeCCChHHHHHHHHhhccCCCCCCHHH
Q 026223 109 LAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQE 188 (241)
Q Consensus 109 la~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~~~~aiG~gs~~~~~~Le~~~~~~~~~s~~e 188 (241)
.++.|+++++.| .++ .+.+..+|||||+ .||.||++|..|+..+.+-.++|+|+.+|+++|++.| ++|||.||
T Consensus 150 ASKllsN~~y~Y---kGm-GLsmGtMi~G~Dk-~GP~lyYVDseG~Rl~G~~FSVGSGs~yAYGVLDsgY--r~dls~eE 222 (285)
T KOG0175|consen 150 ASKLLSNMVYQY---KGM-GLSMGTMIAGWDK-KGPGLYYVDSEGTRLSGDLFSVGSGSTYAYGVLDSGY--RYDLSDEE 222 (285)
T ss_pred HHHHHHHHHhhc---cCc-chhheeeEeeccC-CCCceEEEcCCCCEecCceEeecCCCceeEEeeccCC--CCCCCHHH
Confidence 999999999766 344 6788999999997 8999999999999999999999999999999999996 57999999
Q ss_pred HHHHHHHHHHHhhcccCCCCc-EEEEEEEcCCCcEEEcCHHHHHHHHH
Q 026223 189 TVQTAISTLQSVLQEDFKASE-IEVGVVSKENPEFRVLSIEEIDEHLT 235 (241)
Q Consensus 189 a~~la~~~l~~~~~~d~~~~~-iei~ii~~~~~~~k~l~~~ei~~~l~ 235 (241)
|.+|+++|+..+..||..+|+ +.++.|++++ +.++++.++.++..
T Consensus 223 A~~L~rrAI~hAThRDaySGG~vnlyHv~edG--W~~v~~~Dv~~L~~ 268 (285)
T KOG0175|consen 223 AYDLARRAIYHATHRDAYSGGVVNLYHVKEDG--WVKVSNTDVSELHY 268 (285)
T ss_pred HHHHHHHHHHHHHhcccccCceEEEEEECCcc--ceecCCccHHHHHH
Confidence 999999999999999999985 8999999997 78888888888843
No 40
>KOG0174 consensus 20S proteasome, regulatory subunit beta type PSMB6/PSMB9/PRE3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-36 Score=236.96 Aligned_cols=202 Identities=17% Similarity=0.240 Sum_probs=188.3
Q ss_pred EEccCCceEEEEEcCCEEEEEEeccCC-CCcccCCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCC
Q 026223 26 AVKAAGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEM 104 (241)
Q Consensus 26 a~~~~G~t~igi~~~dgVvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~ 104 (241)
.+. .|+|++|+++++||||++|+|++ +.++.++..+|+.+|.|+++|+-||.++|.|.+.+.++..+..|..+++.++
T Consensus 15 evs-tGTTImAv~y~gGVvlGaDSRTs~GayvanRvtDKlT~itD~i~cCRSGSAADtQaiaD~~~Y~L~~~~~q~~~~p 93 (224)
T KOG0174|consen 15 EVS-TGTTIMAVEYDGGVVLGADSRTSTGAYVANRVTDKLTPITDNIYCCRSGSAADTQAIADIVRYHLELYTIQENKPP 93 (224)
T ss_pred ccc-cCceEEEEEEcCcEEEeccCCccchHHHHhhhcccceeccccEEEecCCchhhHHHHHHHHHHHHHHhhhhcCCCc
Confidence 344 79999999999999999999999 8999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcceeeeeEEeeCCChHHHHHHHHhhccCCCCC
Q 026223 105 PVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAF 184 (241)
Q Consensus 105 ~~~~la~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~~~~aiG~gs~~~~~~Le~~~~~~~~~ 184 (241)
++...|+.+..+.++|.. -+.+++||||||+..|+++|.+.--|...+.+++.-|+|+.+++++++.+| +|+|
T Consensus 94 ~v~~aA~l~r~~~Y~~re-----~L~AgliVAGwD~~~gGqVY~iplGG~l~rq~~aIgGSGStfIYGf~D~~~--r~nM 166 (224)
T KOG0174|consen 94 LVHTAASLFREICYNYRE-----MLSAGLIVAGWDEKEGGQVYSIPLGGSLTRQPFAIGGSGSTFIYGFCDANW--RPNM 166 (224)
T ss_pred hHHHHHHHHHHHHHhCHH-----hhhcceEEeecccccCceEEEeecCceEeecceeeccCCceeeeeeehhhc--CCCC
Confidence 999999999999976532 478999999999989999999999999999999999999999999999996 7899
Q ss_pred CHHHHHHHHHHHHHHhhcccCCCCc-EEEEEEEcCCCcEEEcCHHHHHHHHH
Q 026223 185 TFQETVQTAISTLQSVLQEDFKASE-IEVGVVSKENPEFRVLSIEEIDEHLT 235 (241)
Q Consensus 185 s~~ea~~la~~~l~~~~~~d~~~~~-iei~ii~~~~~~~k~l~~~ei~~~l~ 235 (241)
|+||++.++.+|+..++.||-.+|+ |.+.+|+++|.+++.+.++++..+..
T Consensus 167 t~EE~~~fvk~Av~lAi~rDGsSGGviR~~~I~~~Gver~~~~~d~~~~~~v 218 (224)
T KOG0174|consen 167 TLEECVRFVKNAVSLAIERDGSSGGVIRLVIINKAGVERRFFPGDKLGQFAV 218 (224)
T ss_pred CHHHHHHHHHHHHHHHHhccCCCCCEEEEEEEccCCceEEEecCCccccccc
Confidence 9999999999999999999998885 99999999999999999998876643
No 41
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-35 Score=238.53 Aligned_cols=188 Identities=19% Similarity=0.297 Sum_probs=177.0
Q ss_pred EEccCCceEEEEEcCCEEEEEEeccCC-CCcccCCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCC
Q 026223 26 AVKAAGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEM 104 (241)
Q Consensus 26 a~~~~G~t~igi~~~dgVvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~ 104 (241)
+.+ .|+|++|+.++||||+++|+|++ ++.+..++++||+.+.++|+|+.+|-++|...+.+.+-.+...|+++.++++
T Consensus 33 ~tk-TGTtIvgv~~k~gvIlgADtRaT~G~IvaDKnC~KIH~ia~~IyccGAGtAADte~vt~m~ss~l~Lh~l~t~R~~ 111 (271)
T KOG0173|consen 33 ATK-TGTTIVGVIFKDGVILGADTRATEGPIVADKNCEKIHFIAPNIYCCGAGTAADTEMVTRMISSNLELHRLNTGRKP 111 (271)
T ss_pred ccc-cCcEEEEEEeCCeEEEeecccccCCCeeecchhHHHhhcccceEEccCCchhhHHHHHHHHHHHHHHHHhccCCCC
Confidence 555 79999999999999999999999 8888899999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcceeeeeEEeeCCChHHHHHHHHhhccCCCCC
Q 026223 105 PVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAF 184 (241)
Q Consensus 105 ~~~~la~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~~~~aiG~gs~~~~~~Le~~~~~~~~~ 184 (241)
++-..-+++.+.+.+|. + ..++.+|++|+|. .|||||.+.|.|+....+|.++|+|+..++++||..| +|+|
T Consensus 112 rVv~A~~mlkQ~LFrYq---G--~IgA~LiiGGvD~-TGpHLy~i~phGStd~~Pf~alGSGslaAmsvlEsr~--k~dl 183 (271)
T KOG0173|consen 112 RVVTALRMLKQHLFRYQ---G--HIGAALILGGVDP-TGPHLYSIHPHGSTDKLPFTALGSGSLAAMSVLESRW--KPDL 183 (271)
T ss_pred ceeeHHHHHHHHHHHhc---C--cccceeEEccccC-CCCceEEEcCCCCcCccceeeeccchHHHHHHHHHhc--Cccc
Confidence 99999999999998874 2 5899999999998 8999999999999999999999999999999999986 7999
Q ss_pred CHHHHHHHHHHHHHHhhcccCCCC-cEEEEEEEcCCCcE
Q 026223 185 TFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEF 222 (241)
Q Consensus 185 s~~ea~~la~~~l~~~~~~d~~~~-~iei~ii~~~~~~~ 222 (241)
|.|||++|+.+|+...+..|+.+| |+++|+|++.+.+|
T Consensus 184 t~eea~~Lv~eAi~AGi~nDLgSGsnvdlcVI~~~~~~~ 222 (271)
T KOG0173|consen 184 TKEEAIKLVCEAIAAGIFNDLGSGSNVDLCVITKKGVEY 222 (271)
T ss_pred CHHHHHHHHHHHHHhhhccccCCCCceeEEEEeCCCccc
Confidence 999999999999999999999998 89999999766544
No 42
>KOG0185 consensus 20S proteasome, regulatory subunit beta type PSMB4/PRE4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.5e-34 Score=228.74 Aligned_cols=199 Identities=17% Similarity=0.226 Sum_probs=181.0
Q ss_pred CCceEEEEEcCCEEEEEEeccCC-CCcccCCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHH-HHhCCCCCHH
Q 026223 30 AGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFR-FKYGYEMPVD 107 (241)
Q Consensus 30 ~G~t~igi~~~dgVvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~-~~~~~~~~~~ 107 (241)
+|+++||+|++||||||+|+..+ ++|...++.+||++++||+.+|+||..+|.|.+.+.+........ +..|..+.|+
T Consensus 40 TGTSVla~ky~~GVviaaD~lgSYGslaR~~nVeRi~kVgdntllG~sGdisD~Q~i~r~L~~l~iedn~~~Dg~~l~Pk 119 (256)
T KOG0185|consen 40 TGTSVLALKYKDGVVIAADTLGSYGSLARYKNVERIFKVGDNTLLGASGDISDFQYIQRVLEQLVIEDNRLDDGQSLGPK 119 (256)
T ss_pred ccceEEEEEecCceEEEecccccchhhhhhcCceeeEEecCceEEecCccHHHHHHHHHHHHHHHhcccccccccccChH
Confidence 69999999999999999999999 999999999999999999999999999999999999998877643 5667899999
Q ss_pred HHHHHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcceeeeeEEeeCCChHHHHHHHHhhcc-CCCCCCH
Q 026223 108 VLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMK-NDPAFTF 186 (241)
Q Consensus 108 ~la~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~~~~aiG~gs~~~~~~Le~~~~-~~~~~s~ 186 (241)
.++++|++++ |..++.|.|++..++|+|+|+.+.|.|-.+|--|...+.+..|+|.|+.++.++|++.|+ +.++++.
T Consensus 120 ~ih~yltrvl--Y~rRsKmnPlwntlvVgGv~~~g~~~lg~V~~~G~~Y~~~~vATGfg~hLa~P~lR~~~~~k~~~~s~ 197 (256)
T KOG0185|consen 120 AIHSYLTRVL--YARRSKMNPLWNTLVVGGVDNTGEPFLGYVDLLGVAYESPVVATGFGAHLALPLLRDEWEKKGEDLSR 197 (256)
T ss_pred HHHHHHHHHH--HHhhhccCchhhheeEeeecCCCCeeEEEEeeccccccCchhhhhhHHHhhhHHHHHhhhccchhhHH
Confidence 9999999999 666889999999999999998778999999999999999999999999999999999986 4578999
Q ss_pred HHHHHHHHHHHHHhhcccCCCC-cEEEEEEEcCCCcEEEcCHHHHHH
Q 026223 187 QETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSIEEIDE 232 (241)
Q Consensus 187 ~ea~~la~~~l~~~~~~d~~~~-~iei~ii~~~~~~~k~l~~~ei~~ 232 (241)
+||.+++.+||+....||..+. +|++++|+++| +..-.|..|+.
T Consensus 198 eeA~~li~~cMrVL~YRD~ra~n~fqva~v~~eG--v~i~~p~qv~~ 242 (256)
T KOG0185|consen 198 EEAEALIEKCMRVLYYRDARASNEFQVATVDEEG--VTISKPYQVKT 242 (256)
T ss_pred HHHHHHHHHHHHHHhccccccccceEEEEEcccc--eEecCceeeee
Confidence 9999999999999999999886 69999999976 55444444443
No 43
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=100.00 E-value=1.2e-31 Score=214.89 Aligned_cols=165 Identities=16% Similarity=0.158 Sum_probs=142.1
Q ss_pred CceEEEEEcCCEEEEEEeccCC-CCcccCCCcceeEEe-cCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Q 026223 31 GVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPI-TKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDV 108 (241)
Q Consensus 31 G~t~igi~~~dgVvla~d~~~~-~~l~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 108 (241)
|+|+|||+++||||||+|+|++ +.++.+++.+||++| +++++|++||..+|++.|.++++.+++.|+. + . ++.
T Consensus 1 gtTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~KI~~i~~d~i~~~~aG~~aD~q~l~~~l~~~~~~y~~--~--~-~~~ 75 (172)
T PRK05456 1 GTTILAVRRNGKVAIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEHQG--N--L-LRA 75 (172)
T ss_pred CcEEEEEEECCEEEEEECCceEeCcEEEcCCCceEEEeCCCCEEEEEeccHHHHHHHHHHHHHHHHHccC--c--c-HHH
Confidence 7899999999999999999999 989999999999999 9999999999999999999999999999882 2 1 466
Q ss_pred HHHHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcceeee--eEEeeCCChHHHHHHHHhhccCC-CCCC
Q 026223 109 LAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGH--KATSAGLKEQEAINFLEKKMKND-PAFT 185 (241)
Q Consensus 109 la~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~--~~~aiG~gs~~~~~~Le~~~~~~-~~~s 185 (241)
+++.+..+ ..+ ...+|+.+.+|++ |+ |+||.+||.|++.+. +++|+|+|+.+++++||+.| + |+|
T Consensus 76 ~a~l~~~l-~~~---~~~~~l~~~~lv~--d~---~~ly~id~~G~~~~~~~~~~a~GSGs~~a~g~ld~~y--~~~~m- 143 (172)
T PRK05456 76 AVELAKDW-RTD---RYLRRLEAMLIVA--DK---EHSLIISGNGDVIEPEDGIIAIGSGGNYALAAARALL--ENTDL- 143 (172)
T ss_pred HHHHHHHH-Hhc---cCCCccEEEEEEE--cC---CcEEEECCCCcEeccCCCeEEEecCHHHHHHHHHHhh--hcCCC-
Confidence 66544333 212 2346888999993 43 699999999999766 89999999999999999997 5 889
Q ss_pred HHHHHHHHHHHHHHhhcccCCCC-cEEEEE
Q 026223 186 FQETVQTAISTLQSVLQEDFKAS-EIEVGV 214 (241)
Q Consensus 186 ~~ea~~la~~~l~~~~~~d~~~~-~iei~i 214 (241)
||++++++|++.+.+||..++ +|++-.
T Consensus 144 --eA~~la~kai~~A~~Rd~~sg~~i~v~~ 171 (172)
T PRK05456 144 --SAEEIAEKALKIAADICIYTNHNITIEE 171 (172)
T ss_pred --CHHHHHHHHHHHHHHhCeeCCCcEEEEE
Confidence 999999999999999999887 677754
No 44
>KOG0180 consensus 20S proteasome, regulatory subunit beta type PSMB3/PUP3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=2.9e-31 Score=205.09 Aligned_cols=185 Identities=17% Similarity=0.280 Sum_probs=172.4
Q ss_pred CCceEEEEEcCCEEEEEEeccCC-CCcccCCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Q 026223 30 AGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDV 108 (241)
Q Consensus 30 ~G~t~igi~~~dgVvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 108 (241)
+|+++||++++|+|.||+|.|.. ......++.+|||+++|++++|.+|++.|++.+.++++...+.|+++.+++|.|+.
T Consensus 7 nGg~vvAM~gk~cvaIa~D~RlG~q~~tistdf~ki~~igdr~y~GL~glatDvqtl~~~~~fr~nLy~lre~R~i~P~~ 86 (204)
T KOG0180|consen 7 NGGSVVAMAGKNCVAIASDLRLGVQSQTISTDFQKIFKIGDRLYLGLTGLATDVQTLLERLRFRKNLYELREEREIKPET 86 (204)
T ss_pred cCceEEEEeCCceEEEEeccccceeeeeeeccchhheecCCeeEEeccccchhHHHHHHHHHHHHhHHHhhhhcccCcHH
Confidence 49999999999999999999998 55555679999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcceeee-eEEeeCCChHHHHHHHHhhccCCCCCCHH
Q 026223 109 LAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGH-KATSAGLKEQEAINFLEKKMKNDPAFTFQ 187 (241)
Q Consensus 109 la~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~-~~~aiG~gs~~~~~~Le~~~~~~~~~s~~ 187 (241)
+++++|..+ |.. +.-||.+..+|||+|+++.|.+..+|..|+...- .+.+.|.+++..++.+|..| +|+|..|
T Consensus 87 ~s~mvS~~l--Yek--RfgpYf~~PvVAGl~~~~kPfIc~mD~IGc~~~~~DFVvsGTa~e~L~GmCE~ly--~pnmepd 160 (204)
T KOG0180|consen 87 FSSMVSSLL--YEK--RFGPYFTEPVVAGLDDDNKPFICGMDLIGCIDAPKDFVVSGTASEQLYGMCEALY--EPNMEPD 160 (204)
T ss_pred HHHHHHHHH--HHh--hcCCcccceeEeccCCCCCeeEeecccccCcCccCCeEEecchHHHHHHHHHHhc--CCCCCHH
Confidence 999999999 433 4459999999999999899999999999998754 99999999999999999996 7999999
Q ss_pred HHHHHHHHHHHHhhcccCCCC-cEEEEEEEcCCC
Q 026223 188 ETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENP 220 (241)
Q Consensus 188 ea~~la~~~l~~~~~~d~~~~-~iei~ii~~~~~ 220 (241)
+..+.+.+||.++.+||.-+| +..++||++++.
T Consensus 161 ~LFetisQa~Lna~DRDalSGwGa~vyiI~kdkv 194 (204)
T KOG0180|consen 161 ELFETISQALLNAVDRDALSGWGAVVYIITKDKV 194 (204)
T ss_pred HHHHHHHHHHHhHhhhhhhccCCeEEEEEccchh
Confidence 999999999999999999998 899999999863
No 45
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=99.97 E-value=1.1e-30 Score=208.02 Aligned_cols=163 Identities=13% Similarity=0.061 Sum_probs=138.0
Q ss_pred ceEEEEEcCCEEEEEEeccCC-CCcccCCCcceeEEecC-cEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 026223 32 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITK-YLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVL 109 (241)
Q Consensus 32 ~t~igi~~~dgVvla~d~~~~-~~l~~~~~~~Ki~~i~~-~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 109 (241)
+|+|||+++||||||+|+|++ +.++.+++.+||++|++ +++|++||..+|++.|.++++.+++.|+.+.++ .+
T Consensus 1 tTivgi~~~dgVvlaaD~r~t~G~~v~~~~~~Ki~~i~d~~i~~~~aG~~aD~~~l~~~~~~~~~~y~~~~~~-----~a 75 (171)
T cd01913 1 TTILAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVIAGFAGSTADAFTLFERFEAKLEQYPGNLLR-----AA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeccEEEcCCcceEEEeCCCCEEEEecccHHHHHHHHHHHHHHHHHhhchHHH-----HH
Confidence 589999999999999999999 88999999999999999 999999999999999999999999999988774 44
Q ss_pred HHHHHHHHHHhhhccCccccc-eeeEEEEEcCCCCcEEEEECCCcceeee--eEEeeCCChHHHHHHHHhhccCCC-CCC
Q 026223 110 AKWIADKSQVYTQHAYMRPLG-VVAMVLSIDEECGPRLFKCDPAGHFFGH--KATSAGLKEQEAINFLEKKMKNDP-AFT 185 (241)
Q Consensus 110 a~~ls~~~~~~t~~~~~rP~~-v~~iv~G~d~~~gp~Ly~iDp~G~~~~~--~~~aiG~gs~~~~~~Le~~~~~~~-~~s 185 (241)
++.+..+ ..| ..+|+. +.++++++ ++||.+||.|.+.+. ++.++|+|+.+++++||.+| ++ +||
T Consensus 76 a~l~~~l-~~~----~~~~~l~a~~iv~~~-----~~ly~id~~G~~ie~~~~~~a~GSGS~ya~g~ld~~y--k~~~ms 143 (171)
T cd01913 76 VELAKDW-RTD----RYLRRLEAMLIVADK-----EHTLLISGNGDVIEPDDGIAAIGSGGNYALAAARALL--DHTDLS 143 (171)
T ss_pred HHHHHHH-Hhc----cCcCceEEEEEEeCC-----CcEEEECCCCCEeccCCCeEEEeCCHHHHHHHHHHhh--ccCCCC
Confidence 5543332 212 334655 66666543 389999999999998 49999999999999999997 56 499
Q ss_pred HHHHHHHHHHHHHHhhcccCCCC-cEEEEE
Q 026223 186 FQETVQTAISTLQSVLQEDFKAS-EIEVGV 214 (241)
Q Consensus 186 ~~ea~~la~~~l~~~~~~d~~~~-~iei~i 214 (241)
+.++|++|++.+.+||..++ +|.+-.
T Consensus 144 ---~~~la~~Av~~A~~rd~~tg~~i~~~~ 170 (171)
T cd01913 144 ---AEEIARKALKIAADICIYTNHNITVEE 170 (171)
T ss_pred ---HHHHHHHHHHHHHhhCcccCCCEEEEe
Confidence 56999999999999999998 677643
No 46
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=99.97 E-value=3.6e-30 Score=205.11 Aligned_cols=165 Identities=15% Similarity=0.141 Sum_probs=137.4
Q ss_pred ceEEEEEcCCEEEEEEeccCC-CCcccCCCcceeEEe-cCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 026223 32 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPI-TKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVL 109 (241)
Q Consensus 32 ~t~igi~~~dgVvla~d~~~~-~~l~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 109 (241)
+|+|||+++||||||+|+|++ +.++.+++.+||++| +++++|+++|..+|++.|.++++.+++.|+.+. .+.+
T Consensus 1 tTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~Ki~~i~~d~i~~~~aG~~aD~q~l~~~~~~~~~~y~~~~-----~~~~ 75 (171)
T TIGR03692 1 TTILAVRRNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEYQGNL-----TRAA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeceEEEcCCCCeEEEeCCCCEEEEecchHHHHHHHHHHHHHHHHHccCch-----HHHH
Confidence 589999999999999999999 899999999999999 599999999999999999999999999987633 3555
Q ss_pred HHHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcceeee--eEEeeCCChHHHHHHHHhhccCCCCCCHH
Q 026223 110 AKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGH--KATSAGLKEQEAINFLEKKMKNDPAFTFQ 187 (241)
Q Consensus 110 a~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~--~~~aiG~gs~~~~~~Le~~~~~~~~~s~~ 187 (241)
++.+... ..| ...+.+.+.++++|+ ++||.+||.|.+.+. ++.++|+|+.+++++||..|+ .++|+
T Consensus 76 a~l~~~~-~~~---~~~~~l~a~~iv~~~-----~~ly~i~~~G~~ie~~~~~~a~GSGS~~a~g~ld~~y~-~~~~s-- 143 (171)
T TIGR03692 76 VELAKDW-RTD---RYLRRLEAMLIVADK-----ETSLLISGTGDVIEPEDGIAAIGSGGNYALAAARALLR-NTDLS-- 143 (171)
T ss_pred HHHHHHH-hhc---ccccccEEEEEEEcC-----CCEEEEcCCCcEeccCCCeEEEeCCHHHHHHHHHHhhh-cCCCC--
Confidence 6655542 111 122234467776543 389999999999996 699999999999999999984 26676
Q ss_pred HHHHHHHHHHHHhhcccCCCC-cEEEEE
Q 026223 188 ETVQTAISTLQSVLQEDFKAS-EIEVGV 214 (241)
Q Consensus 188 ea~~la~~~l~~~~~~d~~~~-~iei~i 214 (241)
|+++|++|++.+.+||..++ +|.+-.
T Consensus 144 -a~~la~~Av~~A~~rd~~sg~~i~v~~ 170 (171)
T TIGR03692 144 -AEEIAREALKIAADICIYTNHNITIEE 170 (171)
T ss_pred -HHHHHHHHHHHHHhhCccCCCCEEEEe
Confidence 99999999999999999998 677643
No 47
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=99.97 E-value=4e-29 Score=197.36 Aligned_cols=161 Identities=34% Similarity=0.493 Sum_probs=151.7
Q ss_pred ceEEEEEcCCEEEEEEeccCCCCccc-CCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026223 32 VTSIGVRGKDSVCVVTQKKVPDKLLD-HTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 110 (241)
Q Consensus 32 ~t~igi~~~dgVvla~d~~~~~~l~~-~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 110 (241)
+|+|||+++||||+|+|++.+..+.. .....|++.++++++++++|..+|++.+.++++.+++.|++.++.++++..++
T Consensus 1 ~t~i~i~~~~gvila~d~~~~~~~~~~~~~~~ki~~~~~~~~~~~sG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
T cd01901 1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLREALQLYRLRYGEPISVVALA 80 (164)
T ss_pred CcEEEEEeCCEEEEEEecccCccCeecCCCcceEEEecCCeEEEEecChHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 58999999999999999999855444 67889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcceeee-eEEeeCCChHHHHHHHHhhccCCCCCCHHHH
Q 026223 111 KWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGH-KATSAGLKEQEAINFLEKKMKNDPAFTFQET 189 (241)
Q Consensus 111 ~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~-~~~aiG~gs~~~~~~Le~~~~~~~~~s~~ea 189 (241)
+.+++.++.+++ +||+++++||+|+|+ ++|+||.+||.|++.+. .++++|.++..+.++|++.| +++++.+|+
T Consensus 81 ~~~~~~~~~~~~---~~p~~~~~iiag~~~-~~~~l~~id~~g~~~~~~~~~~~G~~~~~~~~~l~~~~--~~~~~~~~~ 154 (164)
T cd01901 81 KELAKLLQVYTQ---GRPFGVNLIVAGVDE-GGGNLYYIDPSGPVIENPGAVATGSRSQRAKSLLEKLY--KPDMTLEEA 154 (164)
T ss_pred HHHHHHHHHhcC---CCCcceEEEEEEEcC-CCCEEEEECCCcCEeecCcEEEECCCCHHHHHHHHHHh--cCCCCHHHH
Confidence 999999998876 789999999999997 89999999999999999 99999999999999999996 578999999
Q ss_pred HHHHHHHHH
Q 026223 190 VQTAISTLQ 198 (241)
Q Consensus 190 ~~la~~~l~ 198 (241)
++++.+||+
T Consensus 155 ~~~~~~~l~ 163 (164)
T cd01901 155 VELALKALK 163 (164)
T ss_pred HHHHHHHHh
Confidence 999999986
No 48
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=6.9e-13 Score=106.00 Aligned_cols=185 Identities=11% Similarity=0.095 Sum_probs=144.2
Q ss_pred ceEEEEEcCCEEEEEEeccCCCCcccCCCcceeEEe---cCc-EEEEEecchHHHHHHHHHHHHHHHHHH-HHhCCCCCH
Q 026223 32 VTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPI---TKY-LGLLATGMTADARTLVQQARYEAAEFR-FKYGYEMPV 106 (241)
Q Consensus 32 ~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i---~~~-i~~~~sG~~~D~~~l~~~~~~~~~~~~-~~~~~~~~~ 106 (241)
+=|||++.+.|.|+++|+|++..+-..+..+|+|.. +++ +++..+|..+=.|.+++.+....+.-. -..-.-++.
T Consensus 2 TYCv~l~l~~GlVf~sDsRTNAGvD~istfkKl~~~~~pGdRvlvl~taGNLA~tQaV~~ll~e~~~~d~~~~L~n~~sm 81 (255)
T COG3484 2 TYCVGLILDFGLVFGSDSRTNAGVDYISTFKKLFVFELPGDRVLVLCTAGNLAITQAVLHLLDERIQRDDGDSLLNIPSM 81 (255)
T ss_pred ceEEEEEeccceEEecccccccCchHHHHHHHHhhccCCCceEEEEEecCccHHHHHHHHHHHHHhhccchhhhhcchhH
Confidence 358999999999999999998665444677888776 344 456679999999999999887765211 111234566
Q ss_pred HHHHHHHHHHHHHhhhccC------ccccceeeEEEEEcCCCCcEEEEECCCcceee----eeEEeeCCChHHHHHHHHh
Q 026223 107 DVLAKWIADKSQVYTQHAY------MRPLGVVAMVLSIDEECGPRLFKCDPAGHFFG----HKATSAGLKEQEAINFLEK 176 (241)
Q Consensus 107 ~~la~~ls~~~~~~t~~~~------~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~----~~~~aiG~gs~~~~~~Le~ 176 (241)
-..+..+.....+-..+.+ .--|.|++|++|.-..+-|.||.+.|.|++.+ .++..||. +++-+++|++
T Consensus 82 ~eattlvgetvrEv~~rds~~leka~~dfn~sfllGGQI~G~pp~Ly~IYpqGNFIqaT~etpf~QiGE-tKYGKPildR 160 (255)
T COG3484 82 YEATTLVGETVREVQARDSPALEKAGIDFNCSFLLGGQIKGEPPRLYLIYPQGNFIQATPETPFLQIGE-TKYGKPILDR 160 (255)
T ss_pred HHHHHHHHHHHHHHHhccCchhhccCcceeEEEEEcceecCCCceeEEEccCCCeeecCCCCceeEccc-cccCchhhhh
Confidence 6677777776655432211 12388999999998755689999999999884 48899998 6789999999
Q ss_pred hccCCCCCCHHHHHHHHHHHHHHhhcccCCCC-cEEEEEEEcCC
Q 026223 177 KMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKEN 219 (241)
Q Consensus 177 ~~~~~~~~s~~ea~~la~~~l~~~~~~d~~~~-~iei~ii~~~~ 219 (241)
.++ .+++++|+.+.++-+|...++.+++.| .+++.++.+|.
T Consensus 161 ~i~--~~~pLeea~kcaLvS~DSTlkSNiSVGlPldLl~~e~ds 202 (255)
T COG3484 161 TIT--YDTPLEEAAKCALVSFDSTLKSNISVGLPLDLLVYEADS 202 (255)
T ss_pred hhh--ccCCHHHHhhheEEecchhhhccccccCCceeEEEeccc
Confidence 974 579999999999999999999999998 79998888874
No 49
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=7.8e-13 Score=102.14 Aligned_cols=168 Identities=17% Similarity=0.163 Sum_probs=126.0
Q ss_pred CCceEEEEEcCCEEEEEEeccCC-CCcccCCCcceeEEecC-cEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Q 026223 30 AGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITK-YLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVD 107 (241)
Q Consensus 30 ~G~t~igi~~~dgVvla~d~~~~-~~l~~~~~~~Ki~~i~~-~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~ 107 (241)
+++|+++++-++-|+||+|.+++ ++.+...+.+|+.+|.. ++..+++|.++|++.|.+.+..++++|. +. +.
T Consensus 3 h~TTiv~vr~~gkv~iagDGQVtlG~tvmK~narKvRkl~~gkvlaGFAGstADaftLfe~fe~kle~~~---g~---L~ 76 (178)
T COG5405 3 HMTTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEQYQ---GD---LF 76 (178)
T ss_pred eeEEEEEEeeCCeEEEecCceEeecceeeeccHHHHHHHcCCcEEEEecccchhHHHHHHHHHHHHHHcc---Cc---HH
Confidence 58999999999999999999999 88888888877777754 8999999999999999999999998874 21 22
Q ss_pred HHHHHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcceeee--eEEeeCCChHHHHHHHHhhccCCCCCC
Q 026223 108 VLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGH--KATSAGLKEQEAINFLEKKMKNDPAFT 185 (241)
Q Consensus 108 ~la~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~--~~~aiG~gs~~~~~~Le~~~~~~~~~s 185 (241)
..+..+++- +++. ..+|-+.+-++|+ |+ -.+|-+...|-+.+. ..+|||+|..+++......+. .+++|
T Consensus 77 raavelaKd--wr~D-k~lr~LEAmllVa--d~---~~il~isG~gdV~epe~~~~aIGSGgnyAl~AarAl~~-~~~ls 147 (178)
T COG5405 77 RAAVELAKD--WRTD-KYLRKLEAMLLVA--DK---THILIITGNGDVIEPEDDIIAIGSGGNYALSAARALME-NTELS 147 (178)
T ss_pred HHHHHHHHh--hhhh-hHHHHHhhheeEe--CC---CcEEEEecCcceecCCCCeEEEcCCchHHHHHHHHHHh-ccCCC
Confidence 233334432 2443 2456777888886 44 358888888987754 689999999999999988864 34555
Q ss_pred HHHHHHHHHHHHHHhhcccCCCC-cEEEEEE
Q 026223 186 FQETVQTAISTLQSVLQEDFKAS-EIEVGVV 215 (241)
Q Consensus 186 ~~ea~~la~~~l~~~~~~d~~~~-~iei~ii 215 (241)
|.+++.++|..+.+-++.+. +|.|..+
T Consensus 148 ---A~eIa~~sl~iA~eiciyTN~ni~ve~l 175 (178)
T COG5405 148 ---AREIAEKSLKIAGDICIYTNHNIVVEEL 175 (178)
T ss_pred ---HHHHHHHHHhhhheEEEecCCcEEEEEe
Confidence 55677788888775444443 5555444
No 50
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=98.63 E-value=4.7e-09 Score=55.03 Aligned_cols=17 Identities=82% Similarity=1.386 Sum_probs=16.5
Q ss_pred CCCccceecCCCceeEE
Q 026223 9 YDRHITIFSPEGRLFQV 25 (241)
Q Consensus 9 yd~~~t~fsp~G~l~Q~ 25 (241)
||+++|+|||||||+||
T Consensus 1 YD~~~t~FSp~Grl~QV 17 (23)
T PF10584_consen 1 YDRSITTFSPDGRLFQV 17 (23)
T ss_dssp TSSSTTSBBTTSSBHHH
T ss_pred CCCCceeECCCCeEEee
Confidence 89999999999999998
No 51
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=95.97 E-value=0.68 Score=37.57 Aligned_cols=49 Identities=14% Similarity=0.195 Sum_probs=38.7
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhcccCCC-CcEEEEEEEcC
Q 026223 168 QEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKA-SEIEVGVVSKE 218 (241)
Q Consensus 168 ~~~~~~Le~~~~~~~~~s~~ea~~la~~~l~~~~~~d~~~-~~iei~ii~~~ 218 (241)
+.+...|.++| .+.|+++++.++..++|..+.....+. ..+++...++.
T Consensus 131 ~ia~~~lkk~~--~~k~~l~~i~~i~~~i~~~~a~~tpsvS~~~d~~~~~~~ 180 (194)
T PF09894_consen 131 EIANKELKKYW--KPKMSLKDIENIFEKIMEEVASKTPSVSKEYDIYITTKK 180 (194)
T ss_pred HHHHHHHHHhc--CCCCCHHHHHHHHHHHHHHHhhcCCCccCcEEEEEeccc
Confidence 56677777776 488999999999999999998665554 47888777654
No 52
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=92.98 E-value=5 Score=33.89 Aligned_cols=168 Identities=17% Similarity=0.168 Sum_probs=95.1
Q ss_pred ceEEEEEcCCEEEEEEeccCCCCcccCCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Q 026223 32 VTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAK 111 (241)
Q Consensus 32 ~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~ 111 (241)
+.+|+..++||.|+|.|+|. +.+-|.-.|-+.|-+.+ =.|.-.+-++|++
T Consensus 2 tLviay~gknGaviaGDrR~---------------------i~frgdee~re~lEekL---------YsGeIkteEEL~r 51 (293)
T COG4079 2 TLVIAYIGKNGAVIAGDRRE---------------------ITFRGDEEDREKLEEKL---------YSGEIKTEEELAR 51 (293)
T ss_pred eEEEEEecCCCcEEeccceE---------------------EEEecChhHHHHHHHHh---------hcCccccHHHHHH
Confidence 46899999999999999873 34556666665554433 1344456667777
Q ss_pred HHHHHHHHhhh---ccCccccceeeEEEEEcCCC-----CcEEEEE-------CCCcceeeeeEEeeCC-------C---
Q 026223 112 WIADKSQVYTQ---HAYMRPLGVVAMVLSIDEEC-----GPRLFKC-------DPAGHFFGHKATSAGL-------K--- 166 (241)
Q Consensus 112 ~ls~~~~~~t~---~~~~rP~~v~~iv~G~d~~~-----gp~Ly~i-------Dp~G~~~~~~~~aiG~-------g--- 166 (241)
....+--+++- +...|-..-+++++-+...+ .-++|.+ +-.|+- ......|. |
T Consensus 52 ~aeel~Vki~vtDdr~KVrk~~d~VvvGEV~s~~~~~vkRRRvYAT~Ga~aIvel~gs~--vts~~~g~g~aiIv~Gnk~ 129 (293)
T COG4079 52 KAEELGVKITVTDDRNKVRKRNDGVVVGEVSSVERGIVKRRRVYATAGAYAIVELRGSE--VTSTSQGKGSAIIVFGNKF 129 (293)
T ss_pred HHHHcCCEEEEEcchHhhhcccCcEEEEEeecccccceeeeEEeecCCceEEEEecCCe--eEeeecCCCceEEEECcHH
Confidence 65543221110 11122333344444443311 1345543 222221 12222333 3
Q ss_pred -hHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhcccCCC-CcEEEEEEEcCCCcEEEcCHHHHHHH
Q 026223 167 -EQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKA-SEIEVGVVSKENPEFRVLSIEEIDEH 233 (241)
Q Consensus 167 -s~~~~~~Le~~~~~~~~~s~~ea~~la~~~l~~~~~~d~~~-~~iei~ii~~~~~~~k~l~~~ei~~~ 233 (241)
-+.+..+|.++| .+.++++++.+....+|..+....+.. ..++++.+.++-..+..|-.++|..+
T Consensus 130 ~Ke~aneflk~~l--~~k~~lqd~~dal~elfe~vss~tpsVskeydiy~vs~~~d~~~rl~kkDie~L 196 (293)
T COG4079 130 TKEVANEFLKDNL--TKKSKLQDAVDALMELFETVSSKTPSVSKEYDIYQVSSNVDPVLRLVKKDIETL 196 (293)
T ss_pred HHHHHHHHHHhhc--cCCCCHHHHHHHHHHHHHHhhcCCCcccceeEEEEecCCcCHHHHHHHHHHHHH
Confidence 345566777775 577899999999999999888554444 47888888765433444444454433
No 53
>PF00178 Ets: Ets-domain; InterPro: IPR000418 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []. The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, , ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. NMR-analysis of the structure of the Ets domains revealed that it contains three alpha-helixes (1-3) and four-stranded beta-sheets (1-4) arranged in the order alpha1-beta1-beta2-alpha2-alpha3-beta3-beta4 forming a winged helix-turn-helix (wHTH) topology []. The third alpha-helix is responsive to contact to the major groove of the DNA. Different members of the Ets family proteins display distinct DNA binding specificities. The Ets domains and the flanking amino acid sequences of the proteins influence the binding affinity, and the alteration of a single amino acid in the Ets domain can change its DNA binding specificities. Avian leukemia virus E26 is a replication defective retrovirus that induces a mixed erythroid/myeloid leukemia in chickens.This virus carries two distinct oncogenes: v-myb and v-ets. The ets portion of this oncogene is required for the induction of erythroblastosis. V-ets and c-ets-1, its cellular progenitor, have been shown [] to be nuclear DNA-binding proteins. Ets-1 differs slightly from v-ets at its carboxy-terminal region. In most species where it has been sequenced, c-ets-1 exists in various isoforms generated by alternative splicing and differential phosphorylation.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1DUX_F 4AVP_B 1HBX_G 1BC7_C 1K6O_A 1BC8_C 1PUE_E 1FLI_A 2DAO_A 1WWX_A ....
Probab=73.92 E-value=8 Score=27.26 Aligned_cols=29 Identities=14% Similarity=0.217 Sum_probs=23.8
Q ss_pred EEEEEEcCCCcEEEcCHHHHHHHHHhhhc
Q 026223 211 EVGVVSKENPEFRVLSIEEIDEHLTAISE 239 (241)
Q Consensus 211 ei~ii~~~~~~~k~l~~~ei~~~l~~i~~ 239 (241)
-|.+.++++++|+.++|++|.+++..-..
T Consensus 20 ~I~Wt~~~~~eFki~d~~~vA~lWG~~k~ 48 (85)
T PF00178_consen 20 IIAWTGKRGGEFKIVDPEAVARLWGKHKN 48 (85)
T ss_dssp TEEEEETSTTEEEESSHHHHHHHHHHHTT
T ss_pred eeEeeccCCCeEEecCHHHHHHHHHHHcC
Confidence 36788878889999999999999986443
No 54
>smart00413 ETS erythroblast transformation specific domain. variation of the helix-turn-helix motif
Probab=69.05 E-value=8.3 Score=27.30 Aligned_cols=27 Identities=15% Similarity=0.254 Sum_probs=22.8
Q ss_pred EEEEEEcCCCcEEEcCHHHHHHHHHhh
Q 026223 211 EVGVVSKENPEFRVLSIEEIDEHLTAI 237 (241)
Q Consensus 211 ei~ii~~~~~~~k~l~~~ei~~~l~~i 237 (241)
-|.+.+++++.|+.+++++|.++|..-
T Consensus 20 ~I~W~~k~~g~Fkl~~~~~vA~lWG~~ 46 (87)
T smart00413 20 IIRWTDRDGGEFKLVDPEEVARLWGQR 46 (87)
T ss_pred eEEeeCCCCCEEEecCHHHHHHHHhhh
Confidence 477888777789999999999998753
No 55
>KOG3361 consensus Iron binding protein involved in Fe-S cluster formation [Energy production and conversion]
Probab=64.47 E-value=15 Score=28.10 Aligned_cols=44 Identities=20% Similarity=0.160 Sum_probs=37.5
Q ss_pred EEECCCcceeeeeEEeeCCChHHHHHHHHhhccCCCCCCHHHHHHH
Q 026223 147 FKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQT 192 (241)
Q Consensus 147 y~iDp~G~~~~~~~~aiG~gs~~~~~~Le~~~~~~~~~s~~ea~~l 192 (241)
..+|-+|.+...+|--.|.|+..+.+-+-..| -..+|+||+.++
T Consensus 71 Ikvd~~g~I~dakFKTFGCGSAIASSS~aTew--vkgkt~dea~kI 114 (157)
T KOG3361|consen 71 IKVDDSGVIEDAKFKTFGCGSAIASSSLATEW--VKGKTLDEALKI 114 (157)
T ss_pred EEECCCCcEEEeeeeecccchHhhhhHHHHHH--HccccHHHHHhc
Confidence 36788999999999999999999998888776 357899998764
No 56
>KOG3806 consensus Predicted transcription factor [Transcription]
Probab=55.14 E-value=17 Score=29.15 Aligned_cols=26 Identities=19% Similarity=0.331 Sum_probs=21.4
Q ss_pred EEEEEEcCCCcEEEcCHHHHHHHHHh
Q 026223 211 EVGVVSKENPEFRVLSIEEIDEHLTA 236 (241)
Q Consensus 211 ei~ii~~~~~~~k~l~~~ei~~~l~~ 236 (241)
-|+|..+++.+|+.++|+||.++|..
T Consensus 87 ~I~Wtg~~g~EFkl~dp~eVArlWG~ 112 (177)
T KOG3806|consen 87 IIAWTGKDGLEFKLVDPDEVARLWGA 112 (177)
T ss_pred eeEEeCCCCceEEecCHHHHHHHHhh
Confidence 35666667778999999999999985
No 57
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=52.16 E-value=8.6 Score=23.65 Aligned_cols=34 Identities=24% Similarity=0.406 Sum_probs=25.3
Q ss_pred eeCCChHHHHHHHHhhccCCCCCCHHHHHHHHHHH
Q 026223 162 SAGLKEQEAINFLEKKMKNDPAFTFQETVQTAIST 196 (241)
Q Consensus 162 aiG~gs~~~~~~Le~~~~~~~~~s~~ea~~la~~~ 196 (241)
+.|+....+...+.+... .++++.++.++.+++.
T Consensus 12 ~LGy~~~e~~~av~~~~~-~~~~~~e~~ik~aLk~ 45 (47)
T PF07499_consen 12 SLGYSKAEAQKAVSKLLE-KPGMDVEELIKQALKL 45 (47)
T ss_dssp HTTS-HHHHHHHHHHHHH-STTS-HHHHHHHHHCC
T ss_pred HcCCCHHHHHHHHHHhhc-CCCCCHHHHHHHHHhh
Confidence 468888899999998754 6789999988887653
No 58
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=47.43 E-value=45 Score=20.76 Aligned_cols=32 Identities=25% Similarity=0.226 Sum_probs=27.5
Q ss_pred EEECCCcceeeeeEEeeCCChHHHHHHHHhhc
Q 026223 147 FKCDPAGHFFGHKATSAGLKEQEAINFLEKKM 178 (241)
Q Consensus 147 y~iDp~G~~~~~~~~aiG~gs~~~~~~Le~~~ 178 (241)
|.++|+|.+...--...|.....+...||...
T Consensus 3 ~~I~~dG~V~~~v~G~~G~~C~~~t~~lE~~L 34 (48)
T PF11211_consen 3 FTIYPDGRVEEEVEGFKGSSCLEATAALEEAL 34 (48)
T ss_pred EEECCCcEEEEEEEeccChhHHHHHHHHHHHh
Confidence 67899999988877889999998888888764
No 59
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=46.18 E-value=62 Score=23.40 Aligned_cols=33 Identities=27% Similarity=0.383 Sum_probs=24.3
Q ss_pred CCcEEEEEEEcCCCc-EEEcCHHHHHHHHHhhhc
Q 026223 207 ASEIEVGVVSKENPE-FRVLSIEEIDEHLTAISE 239 (241)
Q Consensus 207 ~~~iei~ii~~~~~~-~k~l~~~ei~~~l~~i~~ 239 (241)
++.+-|.+++++.++ +|.+|++++=++...|.+
T Consensus 65 ~~~~vVkViD~~T~eVIRqIP~Ee~l~l~~~l~e 98 (107)
T PF03646_consen 65 SGRVVVKVIDKETGEVIRQIPPEELLDLAKRLRE 98 (107)
T ss_dssp TTEEEEEEEETTT-SEEEEE-HHHHHHHHHHHHH
T ss_pred CCcEEEEEEECCCCcEEEeCCcHHHHHHHHHHHH
Confidence 345889999987554 699999999888877653
No 60
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=45.54 E-value=1e+02 Score=21.57 Aligned_cols=53 Identities=13% Similarity=0.218 Sum_probs=39.1
Q ss_pred CCCCCHHHHHHHHHHHHHHhhcccCCCCcEEEEEEEcCCCcEEEcCHHHHHHHHHhhh
Q 026223 181 DPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAIS 238 (241)
Q Consensus 181 ~~~~s~~ea~~la~~~l~~~~~~d~~~~~iei~ii~~~~~~~k~l~~~ei~~~l~~i~ 238 (241)
.+.+|.++..+.++...+- ...+.|.|.|++.+|.-+.+-+.+|+++.++-.+
T Consensus 17 d~~~s~e~L~~~v~~~c~~-----~~~q~ft~kw~DEEGDp~tiSS~~EL~EA~rl~~ 69 (83)
T cd06404 17 DPSISLEELCNEVRDMCRF-----HNDQPFTLKWIDEEGDPCTISSQMELEEAFRLYE 69 (83)
T ss_pred CCCcCHHHHHHHHHHHhCC-----CCCCcEEEEEECCCCCceeecCHHHHHHHHHHHH
Confidence 3567888777776665543 2234699999999887799999999998876543
No 61
>PRK08868 flagellar protein FlaG; Provisional
Probab=42.11 E-value=1.5e+02 Score=23.14 Aligned_cols=33 Identities=21% Similarity=0.187 Sum_probs=26.2
Q ss_pred CCcEEEEEEEcCCC-cEEEcCHHHHHHHHHhhhc
Q 026223 207 ASEIEVGVVSKENP-EFRVLSIEEIDEHLTAISE 239 (241)
Q Consensus 207 ~~~iei~ii~~~~~-~~k~l~~~ei~~~l~~i~~ 239 (241)
++.+-|.|++++.+ -+|.+|++|+=+++++|.+
T Consensus 99 tgr~VVkViD~~T~EVIRQIP~Ee~L~la~~l~e 132 (144)
T PRK08868 99 SGRDVVTIYEASTGDIIRQIPDEEMLEVLRRLAE 132 (144)
T ss_pred CCCEEEEEEECCCCceeeeCCCHHHHHHHHHHHH
Confidence 34577999997654 4899999999988888764
No 62
>PRK07738 flagellar protein FlaG; Provisional
Probab=41.96 E-value=1.5e+02 Score=22.27 Aligned_cols=32 Identities=22% Similarity=0.260 Sum_probs=25.6
Q ss_pred CcEEEEEEEcCCC-cEEEcCHHHHHHHHHhhhc
Q 026223 208 SEIEVGVVSKENP-EFRVLSIEEIDEHLTAISE 239 (241)
Q Consensus 208 ~~iei~ii~~~~~-~~k~l~~~ei~~~l~~i~~ 239 (241)
+.+-|.+++++.+ -+|.+||+++=+++.+|.+
T Consensus 75 ~~~vVkVvD~~T~EVIRQIPpEe~L~l~~~m~e 107 (117)
T PRK07738 75 NEYYVQVVDERTNEVIREIPPKKLLDMYAAMME 107 (117)
T ss_pred CcEEEEEEECCCCeeeeeCCCHHHHHHHHHHHH
Confidence 4588999997654 4799999999888887753
No 63
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=40.10 E-value=41 Score=27.53 Aligned_cols=35 Identities=11% Similarity=0.005 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHHHHHHHHhhhccCccccceeeEEEEEcC
Q 026223 102 YEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDE 140 (241)
Q Consensus 102 ~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~ 140 (241)
.+-+|+.++.-++++++.|.++|+.+.+ +|+||.-
T Consensus 43 ~~rtP~~~a~Dl~~~i~~y~~~w~~~~v----vLiGYSF 77 (192)
T PF06057_consen 43 SERTPEQTAADLARIIRHYRARWGRKRV----VLIGYSF 77 (192)
T ss_pred hhCCHHHHHHHHHHHHHHHHHHhCCceE----EEEeecC
Confidence 4678999999999999999988876544 7788865
No 64
>PF14804 Jag_N: Jag N-terminus; PDB: 3GKU_B.
Probab=37.12 E-value=56 Score=20.66 Aligned_cols=29 Identities=24% Similarity=0.350 Sum_probs=19.1
Q ss_pred CCHHHHHHHHHHHHHHhhcccCCCCcEEEEEEEcC
Q 026223 184 FTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKE 218 (241)
Q Consensus 184 ~s~~ea~~la~~~l~~~~~~d~~~~~iei~ii~~~ 218 (241)
-|+|||++.|.+-|..- ...+++-|+.+.
T Consensus 5 kt~eeAi~~A~~~l~~~------~~~~~~eVi~~g 33 (52)
T PF14804_consen 5 KTVEEAIEKALKELGVP------REELEYEVIEEG 33 (52)
T ss_dssp SSHHHHHHHHHHHTT--------GGGEEEEEEE--
T ss_pred CCHHHHHHHHHHHhCCC------hHHEEEEEEEcC
Confidence 48899999987776543 235888888864
No 65
>PRK08452 flagellar protein FlaG; Provisional
Probab=36.92 E-value=1.8e+02 Score=21.94 Aligned_cols=32 Identities=16% Similarity=0.168 Sum_probs=24.9
Q ss_pred CcEEEEEEEcCCC-cEEEcCHHHHHHHHHhhhc
Q 026223 208 SEIEVGVVSKENP-EFRVLSIEEIDEHLTAISE 239 (241)
Q Consensus 208 ~~iei~ii~~~~~-~~k~l~~~ei~~~l~~i~~ 239 (241)
+.+-|.+++.+.+ -+|.+||+++=++.++|.+
T Consensus 82 ~~~vVkVvD~~T~eVIRqIP~Ee~L~l~~~m~e 114 (124)
T PRK08452 82 KGLVVSVKEANGGKVIREIPSKEAIELMEYMRD 114 (124)
T ss_pred CcEEEEEEECCCCceeeeCCCHHHHHHHHHHHH
Confidence 3578889997754 4899999999888887653
No 66
>PF03928 DUF336: Domain of unknown function (DUF336); InterPro: IPR005624 This entry contains uncharacterised proteins, including GlcG P45504 from SWISSPROT. The alignment contains many conserved motifs that are suggestive of cofactor binding and enzymatic activity.; PDB: 2A2L_D 3FPW_A 3FPV_E.
Probab=36.24 E-value=44 Score=25.16 Aligned_cols=36 Identities=11% Similarity=0.314 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHHHHHHHHhhcccCCCCcEEEEEEEcCCC
Q 026223 182 PAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENP 220 (241)
Q Consensus 182 ~~~s~~ea~~la~~~l~~~~~~d~~~~~iei~ii~~~~~ 220 (241)
|.+|+++|.+++..++..+.++... +.|+|++..+.
T Consensus 1 p~l~~~~A~~l~~~a~~~a~~~g~~---v~iaVvd~~G~ 36 (132)
T PF03928_consen 1 PSLTLEDAWKLGDAAVEEARERGLP---VSIAVVDAGGH 36 (132)
T ss_dssp EEE-HHHHHHHHHHHHHHHHHTT------EEEEEETTS-
T ss_pred CCcCHHHHHHHHHHHHHHHHHhCCC---eEEEEEECCCC
Confidence 3578999999999999999875433 78888888764
No 67
>PF04539 Sigma70_r3: Sigma-70 region 3; InterPro: IPR007624 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 3 forms a discrete compact three helical domain within the sigma-factor. Region is not normally involved in the recognition of promoter DNA, but in some specific bacterial promoters containing an extended -10 promoter element, residues within region 3 play an important role. Region 3 primarily is involved in binding the core RNA polymerase in the holoenzyme [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1L0O_C 1KU2_B 1RP3_C 1SC5_A 1TTY_A 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P ....
Probab=35.48 E-value=82 Score=20.96 Aligned_cols=32 Identities=13% Similarity=0.114 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 026223 86 VQQARYEAAEFRFKYGYEMPVDVLAKWIADKS 117 (241)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~ 117 (241)
++.+++-........|+.|+.+.+|..+.--.
T Consensus 3 l~~i~~a~~~L~~~lgr~Pt~eEiA~~lgis~ 34 (78)
T PF04539_consen 3 LRKIERARRELEQELGREPTDEEIAEELGISV 34 (78)
T ss_dssp HHHHHHHHHHHHHHHSS--BHHHHHHHHTS-H
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHcccH
Confidence 44555555666778899999999999865433
No 68
>PRK09732 hypothetical protein; Provisional
Probab=32.94 E-value=1.2e+02 Score=23.32 Aligned_cols=37 Identities=5% Similarity=0.127 Sum_probs=30.1
Q ss_pred CCCCCHHHHHHHHHHHHHHhhcccCCCCcEEEEEEEcCCC
Q 026223 181 DPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENP 220 (241)
Q Consensus 181 ~~~~s~~ea~~la~~~l~~~~~~d~~~~~iei~ii~~~~~ 220 (241)
.+.||++.|.+++..++..+.+... .+.|+|++..+-
T Consensus 4 ~~~Ltl~~A~~~~~aA~~~A~~~g~---~v~iaVvD~~G~ 40 (134)
T PRK09732 4 KVILSQQMASAIIAAGQEEAQKNNW---SVSIAVADDGGH 40 (134)
T ss_pred cccCCHHHHHHHHHHHHHHHHHhCC---CEEEEEEcCCCC
Confidence 3569999999999999999886532 589999988763
No 69
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=32.55 E-value=80 Score=27.15 Aligned_cols=57 Identities=12% Similarity=0.070 Sum_probs=37.6
Q ss_pred ceeeEE--EEEcCCCCcEEEEECCCcceeee---eEEeeCCChHHHHHHHHhhccCCCCCCHHHHHHHHHHH
Q 026223 130 GVVAMV--LSIDEECGPRLFKCDPAGHFFGH---KATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAIST 196 (241)
Q Consensus 130 ~v~~iv--~G~d~~~gp~Ly~iDp~G~~~~~---~~~aiG~gs~~~~~~Le~~~~~~~~~s~~ea~~la~~~ 196 (241)
.+..|+ +|.|. .+..+|..|....+ ..||.|.|+ ++....... +++++|.-+++.++
T Consensus 97 ~~~tIiDIGGQD~----K~I~~~~~G~v~~f~MNdkCAAGTG~-FLe~~A~~L-----~i~leel~~~a~~~ 158 (262)
T TIGR02261 97 EARAVLDIGALHG----RAIRMDERGKVEAYKMTSQCASGSGQ-FLENIARYL-----GIAQDEIGSLSQQA 158 (262)
T ss_pred CCCEEEEeCCCce----EEEEEcCCCcEeeEEecCcccccccH-HHHHHHHHh-----CCCHHHHHHHHhcC
Confidence 344554 67665 48889999997754 677888886 444444433 47788777775554
No 70
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=32.33 E-value=1.8e+02 Score=20.32 Aligned_cols=48 Identities=23% Similarity=0.228 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHHHHHHHhhcccCCCCcEEEEEEEcCCCcEEEcCHHHHHHHHHhhh
Q 026223 183 AFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAIS 238 (241)
Q Consensus 183 ~~s~~ea~~la~~~l~~~~~~d~~~~~iei~ii~~~~~~~k~l~~~ei~~~l~~i~ 238 (241)
+.+.++..+.+.+.+... .|.+.+++.++-.+..-+..|+++.++-..
T Consensus 21 ~~~~~~L~~ev~~rf~l~--------~f~lKYlDde~e~v~lssd~eLeE~~rl~~ 68 (81)
T cd06396 21 NTTWASVEAMVKVSFGLN--------DIQIKYVDEENEEVSVNSQGEYEEALKSAV 68 (81)
T ss_pred CCCHHHHHHHHHHHhCCC--------cceeEEEcCCCCEEEEEchhhHHHHHHHHH
Confidence 457777766666555432 699999999887788899999999988544
No 71
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=29.59 E-value=1.8e+02 Score=19.48 Aligned_cols=51 Identities=8% Similarity=0.169 Sum_probs=38.3
Q ss_pred CCCCHHHHHHHHHHHHHHhhcccCCCCcEEEEEEEcCCCcEEEcCHHHHHHHHHhhh
Q 026223 182 PAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAIS 238 (241)
Q Consensus 182 ~~~s~~ea~~la~~~l~~~~~~d~~~~~iei~ii~~~~~~~k~l~~~ei~~~l~~i~ 238 (241)
++++.++....+.+.+... ...+.+.+.+.+|-.+...+.+++...++...
T Consensus 20 ~~~s~~~L~~~i~~~~~~~------~~~~~l~Y~D~dgD~V~i~sd~Dl~~a~~~~~ 70 (84)
T PF00564_consen 20 SDVSFDDLRSKIREKFGLL------DEDFQLKYKDEDGDLVTISSDEDLQEAIEQAK 70 (84)
T ss_dssp STSHHHHHHHHHHHHHTTS------TSSEEEEEEETTSSEEEESSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCC------CccEEEEeeCCCCCEEEeCCHHHHHHHHHHHH
Confidence 3557777776666655543 34799999999887788888999999988764
No 72
>PRK02260 S-ribosylhomocysteinase; Provisional
Probab=28.28 E-value=2.5e+02 Score=22.20 Aligned_cols=61 Identities=15% Similarity=0.229 Sum_probs=44.6
Q ss_pred CcEEEEECCCcceeeeeEEeeC-CChHHHHHHHHhhccC------------------CCCCCHHHHHHHHHHHHHHhhcc
Q 026223 143 GPRLFKCDPAGHFFGHKATSAG-LKEQEAINFLEKKMKN------------------DPAFTFQETVQTAISTLQSVLQE 203 (241)
Q Consensus 143 gp~Ly~iDp~G~~~~~~~~aiG-~gs~~~~~~Le~~~~~------------------~~~~s~~ea~~la~~~l~~~~~~ 203 (241)
+-.+..+.|-|+..-+.....| ..++.+...+++.+++ ..+.+++.|.+.|.+.|......
T Consensus 71 ~~~iI~~sPMGCrTGFYli~~g~~~~~~i~~l~~~~l~~i~~~~~eVPga~~~~CGny~~hsL~~Ak~~a~~~L~~~~~~ 150 (158)
T PRK02260 71 GVEIIDISPMGCRTGFYLILIGTPDEEDVADALKATLEDVLDDQEEVPGANEYQCGNYKDHSLEGAKEIARKILDQGISV 150 (158)
T ss_pred CceEEEECCCccccccEEEEeCCCCHHHHHHHHHHHHHHHHhhcCCCCCCChhcCCChhhCCHHHHHHHHHHHHHhhccc
Confidence 4568899999999888888888 6666666666653321 23678899999998888776543
No 73
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=27.86 E-value=1.2e+02 Score=26.55 Aligned_cols=56 Identities=13% Similarity=0.131 Sum_probs=35.9
Q ss_pred ccceeeEE--EEEcCCCCcEEEEECCCcceeee---eEEeeCCChHHHHHHHHhhccCCCCCCHHHHHHHH
Q 026223 128 PLGVVAMV--LSIDEECGPRLFKCDPAGHFFGH---KATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTA 193 (241)
Q Consensus 128 P~~v~~iv--~G~d~~~gp~Ly~iDp~G~~~~~---~~~aiG~gs~~~~~~Le~~~~~~~~~s~~ea~~la 193 (241)
|-.+..|+ +|.|. .+..+|..|....+ ..||.|.|+ ++....+.. .++++|.-+++
T Consensus 123 pp~v~tIIDIGGQDs----K~I~~d~~G~v~dF~MNdkCAAGTGr-FLE~~A~~L-----gi~leel~~~a 183 (293)
T TIGR03192 123 GNAVRTILDMGGQDC----KAIHCDEKGKVTNFLMNDKCAAGTGR-GMEVISDLM-----QIPIADLGPRS 183 (293)
T ss_pred CCCCCEEEEeCCCce----EEEEEcCCCcEeeeeecCcccccccH-HHHHHHHHc-----CCCHHHHHHHH
Confidence 43454554 67765 58888999987654 677888887 444444443 46777766653
No 74
>PF09887 DUF2114: Uncharacterized protein conserved in archaea (DUF2114); InterPro: IPR008303 There are currently no experimental data for members of this group or their homologues. The exact function of this protein is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=26.76 E-value=2.2e+02 Score=26.01 Aligned_cols=58 Identities=17% Similarity=0.215 Sum_probs=44.6
Q ss_pred CCCCCHHHHHHHHHHHHHHhhcc-cCCCC-cEEEEEEEcCCCcEEEcCHHHHHHHHHhhhc
Q 026223 181 DPAFTFQETVQTAISTLQSVLQE-DFKAS-EIEVGVVSKENPEFRVLSIEEIDEHLTAISE 239 (241)
Q Consensus 181 ~~~~s~~ea~~la~~~l~~~~~~-d~~~~-~iei~ii~~~~~~~k~l~~~ei~~~l~~i~~ 239 (241)
-..+|.|..-+++.+.|.++.++ .+... +++. +++..|.-.-.=+|+|+..++.++++
T Consensus 59 g~eLTrEsV~elVrdtl~e~~k~A~l~i~~DL~F-VVRSTGVvAgf~speevg~~I~ALA~ 118 (448)
T PF09887_consen 59 GVELTRESVAELVRDTLLESHKKAHLDIKKDLDF-VVRSTGVVAGFDSPEEVGEFIKALAD 118 (448)
T ss_pred CccccHHHHHHHHHHHHHHHHHHcCCCccccceE-EEeecceeeccCCHHHHHHHHHHHHh
Confidence 35689999999999999988875 45544 4555 56777765556789999999998874
No 75
>TIGR03285 methan_mark_14 putative methanogenesis marker protein 14. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=25.74 E-value=1.8e+02 Score=26.46 Aligned_cols=58 Identities=19% Similarity=0.288 Sum_probs=43.5
Q ss_pred CCCCCHHHHHHHHHHHHHHhhcc-cCCCCcEEEEEEEcCCCcEEEcCHHHHHHHHHhhhc
Q 026223 181 DPAFTFQETVQTAISTLQSVLQE-DFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISE 239 (241)
Q Consensus 181 ~~~~s~~ea~~la~~~l~~~~~~-d~~~~~iei~ii~~~~~~~k~l~~~ei~~~l~~i~~ 239 (241)
-..+|.|..-+++.+.|.+..+. .+...+++. +++..|.-.-.=+|+|+..++.++++
T Consensus 57 g~eLtresV~elV~dtl~e~~k~A~l~i~DL~F-VVRSTGV~Agf~speevg~~I~ALA~ 115 (445)
T TIGR03285 57 GVELTRESVAELVKDTLKESLKKAGLDIDDLDF-VVRSTGVTAGFASPEEVGEMIKALAD 115 (445)
T ss_pred CccccHHHHHHHHHHHHHHHHHHcCCChhhccE-EEeccceeeccCCHHHHHHHHHHHHh
Confidence 35689999999999999888865 344445554 56777764556789999999988874
No 76
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover. The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=25.57 E-value=2.5e+02 Score=19.84 Aligned_cols=50 Identities=14% Similarity=0.155 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHHHHHHhhcccCCCCcEEEEEEEcCCCcEEEcCHHHHHHHHHhhh
Q 026223 184 FTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAIS 238 (241)
Q Consensus 184 ~s~~ea~~la~~~l~~~~~~d~~~~~iei~ii~~~~~~~k~l~~~ei~~~l~~i~ 238 (241)
.|.++..+.+.+.+.. +...+|.|.|.+.+|--+.+-+.+|+...+..+.
T Consensus 27 ~s~~~L~~~V~~~f~~-----l~~~~ftlky~DeeGDlvtIssdeEL~~A~~~~~ 76 (87)
T cd06402 27 TSYEYLVEKVAAVFPS-----LRGKNFQLFWKDEEGDLVAFSSDEELVMALGSLN 76 (87)
T ss_pred cCHHHHHHHHHHHccc-----cCCCcEEEEEECCCCCEEeecCHHHHHHHHHcCC
Confidence 5666666665555432 2235799999999988889999999998887654
No 77
>TIGR03544 DivI1A_domain DivIVA domain. This model describes a domain found in Bacillus subtilis cell division initiation protein DivIVA, and homologs, toward the N-terminus. It is also found as a repeated domain in certain other proteins, including family TIGR03543.
Probab=25.44 E-value=60 Score=18.35 Aligned_cols=18 Identities=22% Similarity=0.458 Sum_probs=14.6
Q ss_pred EEEcCHHHHHHHHHhhhc
Q 026223 222 FRVLSIEEIDEHLTAISE 239 (241)
Q Consensus 222 ~k~l~~~ei~~~l~~i~~ 239 (241)
++=++++||+.+|.+++.
T Consensus 15 ~rGY~~~eVD~fLd~v~~ 32 (34)
T TIGR03544 15 LRGYDAAEVDAFLDRVAD 32 (34)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 445889999999998864
No 78
>PF05589 DUF768: Protein of unknown function (DUF768); InterPro: IPR008486 This family consists of several uncharacterised hypothetical proteins from Rhizobium loti (Mesorhizobium loti).
Probab=24.71 E-value=76 Score=21.08 Aligned_cols=40 Identities=5% Similarity=0.051 Sum_probs=28.1
Q ss_pred ChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhcccC
Q 026223 166 KEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDF 205 (241)
Q Consensus 166 gs~~~~~~Le~~~~~~~~~s~~ea~~la~~~l~~~~~~d~ 205 (241)
|..++...+..++...+.-+.-.+.+|+.+++..+....+
T Consensus 5 ~~~Fl~~WI~e~V~~~~~~d~is~~~La~kl~adA~a~Gi 44 (64)
T PF05589_consen 5 GIEFLDSWIAENVPDTPKADIISAAELAEKLFADAEAAGI 44 (64)
T ss_pred HHHHHHHHHHhcCCCccccchhhHHHHHHHHHHHHHHcCC
Confidence 4567777777776545555566678899999988875433
No 79
>PF08140 Cuticle_1: Crustacean cuticle protein repeat; InterPro: IPR012539 This family consists of the cuticle proteins from the Cancer pagurus (Rock crab) and the Homarus americanus (American lobster). These proteins are isolated from the calcified regions of the crustacean and they contain two copies of an 18 residue sequence motif, which thus far has been found only in crustacean calcified exoskeletons [].; GO: 0042302 structural constituent of cuticle
Probab=24.39 E-value=1.5e+02 Score=17.69 Aligned_cols=30 Identities=27% Similarity=0.442 Sum_probs=21.7
Q ss_pred ceecCCCceeEEEEccCCceEEEEEcCCEEEEE
Q 026223 14 TIFSPEGRLFQVAVKAAGVTSIGVRGKDSVCVV 46 (241)
Q Consensus 14 t~fsp~G~l~Q~a~~~~G~t~igi~~~dgVvla 46 (241)
.+-.|||+..|..- |-.-|.+.+..|+|+.
T Consensus 4 Gii~~dG~~~q~~~---~~a~ivl~GpSG~v~s 33 (40)
T PF08140_consen 4 GIITPDGTNVQFPH---GVANIVLIGPSGAVLS 33 (40)
T ss_pred ceECCCCCEEECCc---ccceEEEECCceEEee
Confidence 35679999999832 2225788888888875
No 80
>PF08529 NusA_N: NusA N-terminal domain; InterPro: IPR013735 This entry represents the N-terminal RNA polymerase-binding domain of bacterial transcription factors such as NusA (N-utilising substance A). NusA is involved in transcriptional pausing, termination and anti-termination. NusA from Thermotoga maritima contains an N-terminal domain and three RNA-binding domains (one S1 domain and two KH domains). The N-terminal domain consists of a bifurcated coiled beta-sheet within an alpha/beta(3)/alpha/beta/alpha fold, which can be divided into two subdomains: a globular head and a helical body. The globular head subdomain may interact with RNA polymerase, while the helical body displays a similar structure to that of the helical domain in sigma70 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0031554 regulation of transcription termination, DNA-dependent; PDB: 1K0R_B 1HH2_P 1L2F_A 2KWP_A.
Probab=23.82 E-value=3.1e+02 Score=20.33 Aligned_cols=43 Identities=12% Similarity=0.292 Sum_probs=31.7
Q ss_pred CCCCCHHHHHHHHHHHHHHhhcccCCCC-cEEEEEEEcCCCcEEE
Q 026223 181 DPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRV 224 (241)
Q Consensus 181 ~~~~s~~ea~~la~~~l~~~~~~d~~~~-~iei~ii~~~~~~~k~ 224 (241)
..+++.+..++....||..+..+..... ++++- ++.+.+.++.
T Consensus 12 ek~i~~e~v~~ale~al~~a~kK~~~~~~~~~v~-id~~~g~i~v 55 (122)
T PF08529_consen 12 EKGIDKEVVIEALEEALIKAYKKKYGPEANIRVE-IDEDTGEIKV 55 (122)
T ss_dssp CCTB-HHHHHHHHHHHHHHHHHCCTTSSSSEEEE-EETTTTEEEE
T ss_pred HhCcCHHHHHHHHHHHHHHHHHHhhCCCCCEEEE-EECCCCeEEE
Confidence 4579999999999999999998876554 77774 4655555654
No 81
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=23.76 E-value=1.9e+02 Score=23.81 Aligned_cols=43 Identities=16% Similarity=0.301 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhhcccCCCC-cEEEEEEEcCCCcEEEcCHHHH
Q 026223 188 ETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSIEEI 230 (241)
Q Consensus 188 ea~~la~~~l~~~~~~d~~~~-~iei~ii~~~~~~~k~l~~~ei 230 (241)
|++...+..|....+.|..+- .++|+|||-+++-....+--++
T Consensus 22 ealN~Glq~m~~~Lkqdp~Ale~v~lsIVTF~~~a~~~~pf~~~ 65 (207)
T COG4245 22 EALNAGLQMMIDTLKQDPYALERVELSIVTFGGPARVIQPFTDA 65 (207)
T ss_pred HHHHHHHHHHHHHHHhChhhhheeEEEEEEecCcceEEechhhH
Confidence 566677777777776776654 6999999998752233443333
No 82
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=23.44 E-value=1.4e+02 Score=27.59 Aligned_cols=56 Identities=13% Similarity=0.072 Sum_probs=35.9
Q ss_pred eeeEE--EEEcCCCCcEEEEECCCcceeee---eEEeeCCChHHHHHHHHhhccCCCCCCHHHHHHHHHHH
Q 026223 131 VVAMV--LSIDEECGPRLFKCDPAGHFFGH---KATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAIST 196 (241)
Q Consensus 131 v~~iv--~G~d~~~gp~Ly~iDp~G~~~~~---~~~aiG~gs~~~~~~Le~~~~~~~~~s~~ea~~la~~~ 196 (241)
+..|+ +|.|. .+..+|+.|.+..+ ..||.|.|+ ++....... +++++|.-+++.++
T Consensus 268 vrTIIDIGGQDs----K~I~ld~~G~V~dF~MNDKCAAGTGr-FLE~mA~~L-----gi~leEl~~lA~~a 328 (432)
T TIGR02259 268 TRTVLDIGGQDT----KGIQIDDHGIVENFQMNDRCAAGCGR-YLGYIADEM-----NMGLHELGPLAMKS 328 (432)
T ss_pred CCEEEEeCCCce----EEEEEcCCCcEeeeeecCcccccchH-HHHHHHHHc-----CCCHHHHHHHHhcC
Confidence 44444 67665 48899999987643 678888886 444444443 46777766665443
No 83
>PF08289 Flu_M1_C: Influenza Matrix protein (M1) C-terminal domain; InterPro: IPR013188 Matrix protein (M1) of Influenza virus is a bifunctional membrane/RNA-binding protein that mediates the encapsidation of RNA-nucleoprotein cores into the membrane envelope. It is therefore required that M1 binds both membrane and RNA simultaneously. M1 is comprised of two domains connected by a linker sequence. The C-terminal domain contains alpha-helical structure and appears to be involved in growth and virulence of the virus [, ].; GO: 0003723 RNA binding, 0005198 structural molecule activity
Probab=22.53 E-value=2.8e+02 Score=19.42 Aligned_cols=49 Identities=20% Similarity=0.153 Sum_probs=36.5
Q ss_pred EecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhc
Q 026223 75 ATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQH 123 (241)
Q Consensus 75 ~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~ 123 (241)
.|--.+|++.+.+.+|..++--+-.--.+-+-+.|+.-+-..++.|..+
T Consensus 38 sseq~~e~~eiAsq~r~~i~amRsiGt~~~~~~Gl~dDlle~Lq~yQk~ 86 (95)
T PF08289_consen 38 SSEQAAEAMEIASQARSMIQAMRSIGTHPKNSEGLADDLLENLQAYQKR 86 (95)
T ss_pred chHhHHHHHHHHHHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHHHHH
Confidence 3446789999999999988776654444456678888888888888544
No 84
>KOG2599 consensus Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme transport and metabolism]
Probab=22.25 E-value=5.3e+02 Score=22.52 Aligned_cols=46 Identities=15% Similarity=0.159 Sum_probs=34.2
Q ss_pred eeEEeeCCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhcc
Q 026223 158 HKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQE 203 (241)
Q Consensus 158 ~~~~aiG~gs~~~~~~Le~~~~~~~~~s~~ea~~la~~~l~~~~~~ 203 (241)
.+..-+|.|.-+.-=+|.+..+...+-++..+++.++.++..+..+
T Consensus 218 i~~~FtGTGDLfsaLLla~~~~~~~~~~l~~a~e~~ls~~~~viqk 263 (308)
T KOG2599|consen 218 IDGVFTGTGDLFSALLLAWLHESPDNDDLSKAVEQVLSSVQAVIQK 263 (308)
T ss_pred cceEEecccHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHH
Confidence 3556689998777777777655444578889999999888888765
No 85
>PF01242 PTPS: 6-pyruvoyl tetrahydropterin synthase; InterPro: IPR007115 The complex organic chemistry involved in the transformation of GTP to tetrahydrobiopterin is catalysed by only three enzymes: GTP cyclohydrolase I, 6-pyruvoyltetrahydropterin synthase and sepiapterin reductase. Tetrahydrobiopterin is the cofactor for several aromatic amino acid monooxygenases and the nitric oxide synthases. 6-Pyruvoyl tetrahydropterin synthase (PTPS) [] is a Zn-dependent metalloprotein, transforms dihydroneopterin triphosphate into 6-pyruvoyltetrahydropterin in the presence of Mg(II) and for which the crystal structure is known. The enzyme is a homohexameric, composed of a dimer of trimers. A transition metal binding site formed by the three histidine residues 23, 48 and 50 is present in each subunit, and bound Zn(II) is responsible for the enzymatic activity. Site-directed mutagenesis of each of these three histidine residues results in a complete loss of metal binding and enzymatic activity [, ]. The function of the bacterial branch of the sequence lineage appears not to have been established.; GO: 0003874 6-pyruvoyltetrahydropterin synthase activity, 0046872 metal ion binding, 0006729 tetrahydrobiopterin biosynthetic process; PDB: 3QNA_E 3QN9_A 3QN0_B 1Y13_C 3D7J_A 3I2B_J 2OBA_D 3M0N_A 2A0S_A 3LZE_A ....
Probab=22.08 E-value=1.5e+02 Score=21.91 Aligned_cols=46 Identities=17% Similarity=0.242 Sum_probs=28.5
Q ss_pred ecchHHHHHHHHHHHHHHHHHHH--Hh-C------C-CCCHHHHHHHHHHHHHHhh
Q 026223 76 TGMTADARTLVQQARYEAAEFRF--KY-G------Y-EMPVDVLAKWIADKSQVYT 121 (241)
Q Consensus 76 sG~~~D~~~l~~~~~~~~~~~~~--~~-~------~-~~~~~~la~~ls~~~~~~t 121 (241)
.|..-|+..+.+.++..+..+.. -+ . . .++.+.+|.+|.+.+....
T Consensus 43 ~g~v~DF~~lk~~~~~i~~~lDh~~Ln~~~~~~~~~~~pT~E~lA~~i~~~l~~~l 98 (123)
T PF01242_consen 43 DGMVVDFGDLKKIIKEIDDQLDHKFLNEDDPEFDDINNPTAENLARWIFERLKEKL 98 (123)
T ss_dssp TSSSS-HHHHHHHHHHHHHHHTTEEGGHHSGCGCSSTS--HHHHHHHHHHHHHHHH
T ss_pred CCEEEEHHHHHHHHHHHHHHhCcccccCCChhhhccCCCCHHHHHHHHHHHHHHHh
Confidence 46677888888888875443321 11 0 0 2789999999999887653
No 86
>COG4728 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.78 E-value=98 Score=22.61 Aligned_cols=31 Identities=29% Similarity=0.313 Sum_probs=26.9
Q ss_pred eeEEecCcEEEEEecchHHHHHHHHHHHHHH
Q 026223 63 HLFPITKYLGLLATGMTADARTLVQQARYEA 93 (241)
Q Consensus 63 Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~ 93 (241)
-+|+|-+.+++.+.|..+|.-.+.+.++...
T Consensus 9 ~~~~i~~~~gl~~v~~~~~~s~~~~k~~~~~ 39 (124)
T COG4728 9 IIFKIKDKLGLTFVSKSADMSIQVEKAERLI 39 (124)
T ss_pred EEEEEhhhcCcEEEEecchhHHHHHHHHHhh
Confidence 4689999999999999999999988887654
No 87
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=20.79 E-value=2e+02 Score=18.89 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=12.3
Q ss_pred HHHHHhCCCCCHHHHHHHHH
Q 026223 95 EFRFKYGYEMPVDVLAKWIA 114 (241)
Q Consensus 95 ~~~~~~~~~~~~~~la~~ls 114 (241)
.|...+|.+|++.+++..+.
T Consensus 17 ~~~~~~G~~Pt~rEIa~~~g 36 (65)
T PF01726_consen 17 EYIEENGYPPTVREIAEALG 36 (65)
T ss_dssp HHHHHHSS---HHHHHHHHT
T ss_pred HHHHHcCCCCCHHHHHHHhC
Confidence 45556899999999888654
No 88
>COG1370 Prefoldin, molecular chaperone implicated in de novo protein folding, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=20.50 E-value=2.1e+02 Score=22.45 Aligned_cols=35 Identities=34% Similarity=0.477 Sum_probs=27.4
Q ss_pred Cccce-ecCCCceeEEEEccCCceEEEEEcCCEEEEEE
Q 026223 11 RHITI-FSPEGRLFQVAVKAAGVTSIGVRGKDSVCVVT 47 (241)
Q Consensus 11 ~~~t~-fsp~G~l~Q~a~~~~G~t~igi~~~dgVvla~ 47 (241)
..+.+ +|..||+-|+..+ |-.+.-++.+||-+..+
T Consensus 30 ~~v~~~~s~tGRiRqV~~~--G~~~~t~Ra~DG~~tL~ 65 (155)
T COG1370 30 DDVKIVLSKTGRIRQVFVD--GERIATVRANDGLFTLT 65 (155)
T ss_pred CCceEEEcCCCceEEEEEC--CEEEEEEEcCCceEEec
Confidence 33444 5899999999886 88889999888877654
No 89
>COG1754 Uncharacterized C-terminal domain of topoisomerase IA [General function prediction only]
Probab=20.45 E-value=74 Score=27.69 Aligned_cols=55 Identities=24% Similarity=0.332 Sum_probs=36.8
Q ss_pred EEEEcCCCCcEEE-EECCCcceeeeeEEeeCCC-hHHHHHHHHhhccCCCCCCHHHHHHHH
Q 026223 135 VLSIDEECGPRLF-KCDPAGHFFGHKATSAGLK-EQEAINFLEKKMKNDPAFTFQETVQTA 193 (241)
Q Consensus 135 v~G~d~~~gp~Ly-~iDp~G~~~~~~~~aiG~g-s~~~~~~Le~~~~~~~~~s~~ea~~la 193 (241)
+.|.|+..|-.|| .....|-|... ..|.. -.....-|-+.|. -.++|+|+|++|.
T Consensus 77 ~LG~DP~tG~eI~~k~GryGPYVq~---~lg~~~~kpkraSLpkg~~-~e~ItLE~AL~LL 133 (298)
T COG1754 77 VLGIDPETGEEIYLKNGRYGPYVQE---QLGDPKPKPKRASLPKGWK-PETITLEKALKLL 133 (298)
T ss_pred ccccCCCCCceeEEeccCCCceeee---ecCCCCCCcccccCCCCCC-hhhCcHHHHHHHH
Confidence 3478976665555 66788877654 55655 4455556666663 3579999999874
No 90
>COG3193 GlcG Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only]
Probab=20.30 E-value=2.5e+02 Score=21.79 Aligned_cols=36 Identities=14% Similarity=0.226 Sum_probs=29.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhhcccCCCCcEEEEEEEcCC
Q 026223 181 DPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKEN 219 (241)
Q Consensus 181 ~~~~s~~ea~~la~~~l~~~~~~d~~~~~iei~ii~~~~ 219 (241)
.+.+|+++|.+++..++..+.+.- -.+.+.+++..+
T Consensus 5 ~~~Ls~e~a~~ii~aA~a~a~~~g---~~VtvaVVD~~G 40 (141)
T COG3193 5 KPVLSLELANKIIAAAVAEAQQLG---VPVTVAVVDAGG 40 (141)
T ss_pred ccccCHHHHHHHHHHHHHHHHHhC---CceEEEEECCCC
Confidence 467999999999999999888541 158999998876
No 91
>PHA03324 nuclear egress membrane protein UL34; Provisional
Probab=20.23 E-value=1.3e+02 Score=25.08 Aligned_cols=67 Identities=9% Similarity=0.053 Sum_probs=41.4
Q ss_pred hCCCCCHHHHHHHHHHHHHHhhhccCccccceeeEEEEEcCC--CCc-EEEEECCCcceeeeeEEeeCCCh
Q 026223 100 YGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEE--CGP-RLFKCDPAGHFFGHKATSAGLKE 167 (241)
Q Consensus 100 ~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~--~gp-~Ly~iDp~G~~~~~~~~aiG~gs 167 (241)
.|-++|+|++-+.+++.++.-.-+.+...-|+++|+.|+-.. +-| ..+..|.. ++.-...-++|-..
T Consensus 49 dgp~fP~EYILrlM~swa~v~dpylRIQNTGvSVLfqG~Ftrp~~ap~~a~ta~~n-nViLaSt~StglSl 118 (274)
T PHA03324 49 DGPPIPAEYILEAMNSFLNIGEAWLRIQNTGQAVIVAGCFTKNAHCGDQIWEAPAP-TISLAAAKSLWVSA 118 (274)
T ss_pred cCCCCcHHHHHHHHHhhhcCCCceEEEecCceEEEEEeeecCCCCCCcceeecCCC-ceEeeechhccccH
Confidence 578899999999998887633222334457899999999432 122 33333333 33334455677654
No 92
>PRK14603 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=20.06 E-value=1.3e+02 Score=24.55 Aligned_cols=37 Identities=16% Similarity=0.357 Sum_probs=27.7
Q ss_pred EeeCCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHH
Q 026223 161 TSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTL 197 (241)
Q Consensus 161 ~aiG~gs~~~~~~Le~~~~~~~~~s~~ea~~la~~~l 197 (241)
.+.|.....+...+++.....++++.++.++.|++.|
T Consensus 160 ~~LGy~~~ea~~al~~i~~~~~~~~~e~lir~aLk~l 196 (197)
T PRK14603 160 LALGFREAQVRSVVAELLAQNPEASAQTLIRKALKRL 196 (197)
T ss_pred HHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc
Confidence 4578888888888887643245678888888877765
Done!