Query 026223
Match_columns 241
No_of_seqs 117 out of 1096
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 08:28:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026223.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026223hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iru_A 20S proteasome; cell cy 100.0 7.2E-62 2.5E-66 412.0 26.8 241 1-241 1-246 (246)
2 1ryp_A 20S proteasome; multica 100.0 3.7E-61 1.3E-65 407.0 24.6 232 7-241 1-243 (243)
3 3h4p_A Proteasome subunit alph 100.0 2.1E-61 7.3E-66 412.5 18.1 234 1-239 4-242 (264)
4 1iru_B 20S proteasome; cell cy 100.0 1.7E-59 5.7E-64 394.5 25.8 227 6-238 2-233 (233)
5 1ryp_C 20S proteasome; multica 100.0 5E-59 1.7E-63 394.1 27.1 229 8-239 4-243 (244)
6 1iru_C 20S proteasome; cell cy 100.0 8.1E-59 2.8E-63 396.4 26.0 230 8-240 4-243 (261)
7 1yar_A Proteasome alpha subuni 100.0 5.7E-59 1.9E-63 391.3 24.3 223 7-234 6-233 (233)
8 1ryp_D 20S proteasome; multica 100.0 1.7E-58 5.9E-63 390.2 26.4 228 8-239 1-236 (241)
9 1iru_G 20S proteasome; cell cy 100.0 1.3E-58 4.4E-63 393.7 25.1 232 4-238 2-240 (254)
10 1j2p_A Alpha-ring, proteasome 100.0 3.5E-58 1.2E-62 389.4 26.5 231 1-239 1-238 (246)
11 1iru_E 20S proteasome; cell cy 100.0 2E-58 6.8E-63 389.8 23.2 231 1-237 1-241 (241)
12 1iru_D 20S proteasome; cell cy 100.0 2.6E-58 8.9E-63 390.6 23.0 226 9-240 3-235 (248)
13 3nzj_F Proteasome component C1 100.0 9.5E-58 3.3E-62 393.6 26.0 228 5-234 4-240 (288)
14 1ryp_B 20S proteasome; multica 100.0 1E-57 3.5E-62 387.4 25.8 228 7-237 3-250 (250)
15 1iru_F 20S proteasome; cell cy 100.0 3.8E-58 1.3E-62 392.6 22.0 228 7-239 4-238 (263)
16 1ryp_E 20S proteasome; multica 100.0 5.8E-58 2E-62 387.2 22.1 227 10-240 1-238 (242)
17 1ryp_F 20S proteasome; multica 100.0 1.4E-57 4.6E-62 382.9 18.8 221 8-234 4-233 (233)
18 1ryp_G 20S proteasome; multica 100.0 2.2E-56 7.4E-61 377.9 25.9 230 6-237 1-238 (244)
19 3h4p_a Proteasome subunit beta 100.0 5.5E-49 1.9E-53 327.5 23.7 202 31-240 1-205 (219)
20 1yar_H Proteasome beta subunit 100.0 1.3E-47 4.6E-52 318.8 26.4 203 26-238 4-208 (217)
21 1j2q_H Proteasome beta subunit 100.0 1.7E-47 5.9E-52 314.7 25.7 198 32-238 1-201 (202)
22 1q5q_A Proteasome alpha-type s 100.0 2.5E-48 8.7E-53 331.0 18.3 215 13-239 4-237 (259)
23 3mi0_A Proteasome subunit alph 100.0 4E-47 1.4E-51 321.1 24.9 201 26-238 23-238 (248)
24 1q5q_H Proteasome beta-type su 100.0 1.1E-46 3.7E-51 316.8 25.0 203 32-239 1-219 (235)
25 1q5r_H Proteasome beta-type su 100.0 1.6E-46 5.4E-51 324.5 25.1 208 26-239 61-284 (294)
26 1ryp_L 20S proteasome; multica 100.0 8.4E-47 2.9E-51 312.9 22.1 200 32-239 1-202 (212)
27 3nzj_K Proteasome component PR 100.0 8.1E-47 2.8E-51 325.3 22.3 205 26-239 71-277 (287)
28 2jay_A Proteasome; hydrolase; 100.0 2E-46 6.8E-51 323.6 24.2 228 6-239 22-276 (291)
29 1iru_H 20S proteasome; cell cy 100.0 4.4E-47 1.5E-51 313.0 18.9 199 32-237 1-201 (205)
30 1iru_N 20S proteasome; cell cy 100.0 1.3E-47 4.4E-52 319.3 15.7 204 26-235 4-210 (219)
31 1iru_L 20S proteasome; cell cy 100.0 2E-46 6.8E-51 308.9 22.6 199 32-239 1-201 (204)
32 1ryp_N 20S proteasome; multica 100.0 2.6E-47 9.1E-52 320.2 14.9 205 26-234 4-219 (233)
33 1iru_M 20S proteasome; cell cy 100.0 3.5E-45 1.2E-49 303.3 24.5 189 27-220 6-203 (213)
34 1ryp_M 20S proteasome; multica 100.0 1.2E-44 4.1E-49 302.0 23.8 191 26-221 5-213 (222)
35 1g0u_M Proteasome component PR 100.0 2.9E-46 9.9E-51 319.5 14.3 206 26-235 37-253 (266)
36 1ryp_K 20S proteasome; multica 100.0 1.3E-44 4.6E-49 296.5 23.3 190 32-227 2-194 (198)
37 1ryp_H 20S proteasome; multica 100.0 8.1E-45 2.8E-49 299.5 22.1 191 26-225 5-197 (205)
38 3unf_N Proteasome subunit beta 100.0 2.3E-45 7.9E-50 301.3 17.6 195 32-235 1-198 (199)
39 3unf_H Proteasome subunit beta 100.0 1.5E-44 5.2E-49 303.3 21.5 192 32-233 1-194 (234)
40 3nzj_H Proteasome component PU 100.0 5.9E-44 2E-48 303.9 24.3 191 26-226 25-217 (261)
41 1iru_J 20S proteasome; cell cy 100.0 8.9E-44 3E-48 293.2 24.3 191 30-226 7-201 (205)
42 1ryp_J 20S proteasome; multica 100.0 2.4E-43 8.3E-48 290.4 25.4 190 30-226 7-200 (204)
43 1iru_K 20S proteasome; cell cy 100.0 1.4E-43 4.9E-48 291.1 22.2 189 32-226 2-192 (201)
44 1ryp_I 20S proteasome; multica 100.0 5.2E-43 1.8E-47 292.1 24.0 186 32-226 1-188 (222)
45 1iru_I 20S proteasome; cell cy 100.0 5.9E-42 2E-46 287.8 23.7 186 32-227 1-188 (234)
46 2z3b_A ATP-dependent protease 100.0 3.8E-36 1.3E-40 242.9 17.8 169 30-215 4-179 (180)
47 1m4y_A ATP-dependent protease 100.0 1.6E-35 5.4E-40 237.3 18.0 166 32-215 1-171 (171)
48 1g3k_A ATP-dependent protease 100.0 2.9E-35 1E-39 236.4 17.8 167 32-216 1-173 (174)
49 1yo5_C SAM pointed domain cont 66.5 8.9 0.0003 26.7 4.5 27 212-238 31-57 (97)
50 2dao_A Transcription factor ET 59.6 11 0.00039 27.1 4.1 28 211-238 27-54 (118)
51 3jtg_A ETS-related transcripti 55.7 17 0.0006 25.5 4.5 27 212-238 25-51 (103)
52 2hc5_A ORF 99, hypothetical pr 55.1 26 0.00088 25.2 5.4 32 207-238 66-98 (117)
53 1wwx_A E74-like factor 5 ESE-2 50.4 15 0.00052 26.0 3.5 26 212-237 29-54 (107)
54 1vd2_A Protein kinase C, IOTA 49.5 32 0.0011 23.4 4.9 52 181-237 23-74 (89)
55 3rj2_X ORF158L protein, putati 31.1 27 0.00093 25.1 2.2 19 7-25 53-71 (138)
56 1bc8_C SAP-1, protein (SAP-1 E 29.6 26 0.0009 24.1 1.9 25 212-237 24-48 (93)
57 1pue_E Protein (transcription 29.4 85 0.0029 21.3 4.4 26 212-237 21-48 (89)
58 1hbx_G ETS-domain protein ELK- 28.3 53 0.0018 24.8 3.5 27 212-239 25-51 (157)
59 1fli_A FLI-1; transcription/DN 26.4 32 0.0011 23.9 1.9 26 212-238 25-50 (98)
60 3fpw_A HBPS, extracellular HAE 24.8 1.2E+02 0.004 23.7 5.1 37 181-220 62-98 (192)
61 4avp_A ETS translocation varia 24.6 63 0.0022 22.7 3.2 26 212-238 31-56 (106)
62 3kol_A Oxidoreductase, glyoxal 23.3 1E+02 0.0035 21.4 4.4 21 142-162 132-152 (156)
63 1awc_A Protein (GA binding pro 22.8 41 0.0014 23.9 1.9 25 212-237 20-44 (110)
64 2lpd_A Uncharacterized protein 22.7 1.3E+02 0.0045 20.6 4.4 49 139-187 21-79 (95)
65 2lf8_A Transcription factor ET 28.2 18 0.00062 26.4 0.0 26 211-236 23-48 (128)
66 2ypr_A Protein FEV; transcript 21.2 69 0.0024 22.4 2.8 26 212-238 27-52 (102)
67 2a2l_A Unknown; structural gen 20.5 86 0.0029 23.1 3.4 36 182-220 10-45 (145)
No 1
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=100.00 E-value=7.2e-62 Score=412.04 Aligned_cols=241 Identities=63% Similarity=1.012 Sum_probs=224.6
Q ss_pred CCCCCCCCCCCccceecCCCceeEE-----EEccCCceEEEEEcCCEEEEEEeccCCCCcccCCCcceeEEecCcEEEEE
Q 026223 1 MSRGSGGGYDRHITIFSPEGRLFQV-----AVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLA 75 (241)
Q Consensus 1 ~~~~~~~~yd~~~t~fsp~G~l~Q~-----a~~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~ 75 (241)
|.|+++++||+++|+|||||||||| |++++|+|+|||+++||||||+|+|++++++..++.+||++|+++++|++
T Consensus 1 ~~m~~~~~yd~~~t~fsp~Grl~QvEya~~av~~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~ 80 (246)
T 1iru_A 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVM 80 (246)
T ss_dssp -CCSCCCTTTTTSSCCCTTSCCHHHHHHHHHHHTTCCEEEEEECSSEEEEEEECCCCCSSBCGGGCCSEEESSSSCEEEE
T ss_pred CCCCccCCcCCCCccCCCCCeehHHHHHHHHHhcCCCCEEEEEeCCEEEEEEeecCCCcccCCCccCceEEECCCEEEEE
Confidence 6677778999999999999999999 67733999999999999999999999998988889999999999999999
Q ss_pred ecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcce
Q 026223 76 TGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHF 155 (241)
Q Consensus 76 sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~ 155 (241)
+|+.+|++.|.++++.+++.|+++++++++++.+++++++++|.|++++++|||++++||||||+++||+||.+||+|++
T Consensus 81 aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~ 160 (246)
T 1iru_A 81 TGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYY 160 (246)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSBCCCSEEEEEEEEETTTEEEEEEECTTSCE
T ss_pred eccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCCCCcceEEEEEEEeCCCCeEEEEEcCCeeE
Confidence 99999999999999999999999999999999999999999999999988999999999999997678999999999999
Q ss_pred eeeeEEeeCCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhcccCCCCcEEEEEEEcCCCcEEEcCHHHHHHHHH
Q 026223 156 FGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLT 235 (241)
Q Consensus 156 ~~~~~~aiG~gs~~~~~~Le~~~~~~~~~s~~ea~~la~~~l~~~~~~d~~~~~iei~ii~~~~~~~k~l~~~ei~~~l~ 235 (241)
.+++++|+|+|+++++++||+.|+.+++||++||++++++||..+.++|....+++|++|++++.+|++++++||+++++
T Consensus 161 ~~~~~~aiG~gs~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd~sg~~i~v~vi~~~g~~~~~l~~~ei~~~~~ 240 (246)
T 1iru_A 161 CGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLV 240 (246)
T ss_dssp EEBSEEEEETTHHHHHHHHHHHTTSCCCCCHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEETTEEEEEECCHHHHHHHHH
T ss_pred EEeeEEEECCCcHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEECCCCeEEECCHHHHHHHHH
Confidence 99999999999999999999997433399999999999999999999994434899999999876699999999999999
Q ss_pred hhhccC
Q 026223 236 AISERD 241 (241)
Q Consensus 236 ~i~~~~ 241 (241)
+|+++|
T Consensus 241 ~~~~~~ 246 (246)
T 1iru_A 241 ALAERD 246 (246)
T ss_dssp HHHTC-
T ss_pred HhhccC
Confidence 998875
No 2
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=100.00 E-value=3.7e-61 Score=406.99 Aligned_cols=232 Identities=51% Similarity=0.846 Sum_probs=219.6
Q ss_pred CCCCCccceecCCCceeEE-----EEccC-CceEEEEEcCCEEEEEEeccCCCCcccCCCcceeEEecCcEEEEEecchH
Q 026223 7 GGYDRHITIFSPEGRLFQV-----AVKAA-GVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTA 80 (241)
Q Consensus 7 ~~yd~~~t~fsp~G~l~Q~-----a~~~~-G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~ 80 (241)
++||+++|+|||||||||| |++ + |+|+|||+++||||||+|+|.+++++..++.+|||+|+++++|+++|+.+
T Consensus 1 ~~yd~~~t~fsp~Grl~QvEYA~~av~-~~Gtt~vgi~~~dgVvlaad~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~a 79 (243)
T 1ryp_A 1 AGYDRHITIFSPEGRLYQVEYAFKATN-QTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVSYIFCISRTIGMVVNGPIP 79 (243)
T ss_dssp CGGGGTSSSCCTTSCCHHHHHHHHHTT-TTCCCEEEEECSSEEEEEEECCCCCTTBCGGGCCSEEECSSSCEEEEESCHH
T ss_pred CCCCCCCceECCCCeeHHHHHHHHHHh-cCCCcEEEEEeCCEEEEEEEecCCccccCCCcCCceEEECCCEEEEEEecHH
Confidence 4799999999999999999 677 6 99999999999999999999999999888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcceeeeeE
Q 026223 81 DARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKA 160 (241)
Q Consensus 81 D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~~~ 160 (241)
|++.|.++++.+++.|+++++++|+++.++++|++++|.|++++++|||++++||||||+++||+||++||.|++.++++
T Consensus 80 D~~~l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~l~~y~~~~~~rP~~v~~lvaG~D~~~gp~Ly~~dp~G~~~~~~~ 159 (243)
T 1ryp_A 80 DARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKA 159 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEETTTEEEEEEECTTSCEEEBSE
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccccceEEEEEEEcCCCCcEEEEEcCCCCEEEEEE
Confidence 99999999999999999999999999999999999999999998899999999999999767899999999999999999
Q ss_pred EeeCCChHHHHHHHHhhccCCC-----CCCHHHHHHHHHHHHHHhhcccCCCCcEEEEEEEcCCCcEEEcCHHHHHHHHH
Q 026223 161 TSAGLKEQEAINFLEKKMKNDP-----AFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLT 235 (241)
Q Consensus 161 ~aiG~gs~~~~~~Le~~~~~~~-----~~s~~ea~~la~~~l~~~~~~d~~~~~iei~ii~~~~~~~k~l~~~ei~~~l~ 235 (241)
+|+|+|+++++++||+.|++.+ +||++||++++++||..+.+||....+++|++|++++ |++++++||+++++
T Consensus 160 ~a~G~gs~~a~~~Le~~~~~~~~~~~~~ms~eea~~l~~~al~~~~~rd~s~~~iev~vi~~~g--~~~l~~~ei~~~~~ 237 (243)
T 1ryp_A 160 TATGPKQQEITTNLENHFKKSKIDHINEESWEKVVEFAITHMIDALGTEFSKNDLEVGVATKDK--FFTLSAENIEERLV 237 (243)
T ss_dssp EEESTTHHHHHHHHHHHHHHHCSSSCCCSSHHHHHHHHHHHHHHHHTCCCCTTSEEEEEEETTE--EEECCHHHHHHHHH
T ss_pred EEECCCcHHHHHHHHHHhhhcccccccCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEECCC--eEECCHHHHHHHHH
Confidence 9999999999999999984311 8999999999999999999999544489999999986 99999999999999
Q ss_pred hhhccC
Q 026223 236 AISERD 241 (241)
Q Consensus 236 ~i~~~~ 241 (241)
+|.++|
T Consensus 238 ~~~~~~ 243 (243)
T 1ryp_A 238 AIAEQD 243 (243)
T ss_dssp HHTTTC
T ss_pred HhhccC
Confidence 998876
No 3
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=2.1e-61 Score=412.52 Aligned_cols=234 Identities=35% Similarity=0.632 Sum_probs=211.6
Q ss_pred CCCCCCCCCCCccceecCCCceeEE-----EEccCCceEEEEEcCCEEEEEEeccCCCCcccCCCcceeEEecCcEEEEE
Q 026223 1 MSRGSGGGYDRHITIFSPEGRLFQV-----AVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLA 75 (241)
Q Consensus 1 ~~~~~~~~yd~~~t~fsp~G~l~Q~-----a~~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~ 75 (241)
|.|.++++||+++|+|||||||||| |++ +|+|+|||+++||||||+|+|.+.+++..++.+||++|+++++|++
T Consensus 4 ~~~~~~~~yd~~~t~fSp~Grl~QvEYA~~av~-~Gtt~vgi~~~dgVVlaaD~r~~~~li~~~~~~KI~~i~d~i~~~~ 82 (264)
T 3h4p_A 4 MQMVPPSAYDRAITVFSPEGRLYQVEYAREAVR-RGTTAIGIACKDGVVLAVDRRITSKLVKIRSIEKIFQIDDHVAAAT 82 (264)
T ss_dssp ------------CCCCCSSSSCHHHHHHHHHHH-HSCCEEEECCSSEEEEEEECCCCSTTBCTTTCCCEEEEETTEEEEE
T ss_pred CcCCCccccCCCcceECCCCeeHHHHhHHHHHh-cCCcEEEEEECCEEEEEEecCccCCccccCccccEEEecCcEEEEe
Confidence 7788889999999999999999999 787 6999999999999999999999977888899999999999999999
Q ss_pred ecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcce
Q 026223 76 TGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHF 155 (241)
Q Consensus 76 sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~ 155 (241)
+|+.+|++.|.++++.+++.|+++++++++++.++++|++++|.|++++++|||+|++||||||+ +||+||++||.|++
T Consensus 83 aG~~aD~~~l~~~~r~~~~~y~~~~~~~i~v~~la~~l~~~~~~yt~~~~~rP~~v~~lvaG~D~-~gp~Ly~iDp~G~~ 161 (264)
T 3h4p_A 83 SGLVADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDK-NEARLFETDPSGAL 161 (264)
T ss_dssp EECSHHHHHHHTTHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHTTSBSSCCCCSEEEEEEEEET-TEEEEEEECTTCCC
T ss_pred ccchHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCCeeEEEEEEEEeC-CcCEEEEECCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999996 79999999999999
Q ss_pred eeeeEEeeCCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhcccCCCCcEEEEEEEcCCCcEEEcCHHHHHHHHH
Q 026223 156 FGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLT 235 (241)
Q Consensus 156 ~~~~~~aiG~gs~~~~~~Le~~~~~~~~~s~~ea~~la~~~l~~~~~~d~~~~~iei~ii~~~~~~~k~l~~~ei~~~l~ 235 (241)
.+++++|+|+|+.+++++||+.| +++||++||++++++||..+.++ ....+++|++|++++.+|++++++||+++++
T Consensus 162 ~~~~~~aiGsgs~~a~~~Le~~~--~~~ms~eea~~la~~al~~a~~~-~sg~~iev~vi~~~~~~~~~l~~~ei~~~~~ 238 (264)
T 3h4p_A 162 IEYKATAIGSGRPVVMELLEKEY--RDDITLDEGLELAITALTKANED-IKPENVDVCIITVKDAQFKKIPVEEIKKLIE 238 (264)
T ss_dssp EEESEEEESTTHHHHTTTHHHHC--CTTCCSHHHHHHHHHHHHHHSSS-CCTTSEEEEEEETTTTEEEECCTTTTGGGTT
T ss_pred EecCeEEECCCHHHHHHHHHHhc--cCCCCHHHHHHHHHHHHHHHHhc-cCCCeEEEEEEEeCCCcEEECCHHHHHHHHH
Confidence 99999999999999999999996 68999999999999999999987 5445899999998877799999999999999
Q ss_pred hhhc
Q 026223 236 AISE 239 (241)
Q Consensus 236 ~i~~ 239 (241)
++.+
T Consensus 239 ~~~~ 242 (264)
T 3h4p_A 239 KVKK 242 (264)
T ss_dssp TTTT
T ss_pred HHHH
Confidence 8864
No 4
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=100.00 E-value=1.7e-59 Score=394.54 Aligned_cols=227 Identities=36% Similarity=0.593 Sum_probs=216.0
Q ss_pred CCCCCCccceecCCCceeEE-----EEccCCceEEEEEcCCEEEEEEeccCCCCcccCCCcceeEEecCcEEEEEecchH
Q 026223 6 GGGYDRHITIFSPEGRLFQV-----AVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTA 80 (241)
Q Consensus 6 ~~~yd~~~t~fsp~G~l~Q~-----a~~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~ 80 (241)
.++||+++|+|||||||||| |++ +|+|+|||+++||||||+|+|.+++++.+++.+||++|+++++|++||+.+
T Consensus 2 ~~~yd~~~t~fsp~Grl~QvEya~~av~-~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~a 80 (233)
T 1iru_B 2 ERGYSFSLTTFSPSGKLVQIEYALAAVA-GGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGLVYSGMGP 80 (233)
T ss_dssp CCCCCSBSCCCCTTSCCHHHHHHHHHHH-TSCCEEEEECSSCEEEEEECCCCCSSBCSTTCCSSEESSSSEEEEEEECHH
T ss_pred CCCccCCceeECCCCeEehhHhHHHHHH-cCCcEEEEEeCCEEEEEEEecCCccccccccCCeEEEECCCEEEEEEEccH
Confidence 35899999999999999999 677 699999999999999999999999899889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcceeeeeE
Q 026223 81 DARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKA 160 (241)
Q Consensus 81 D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~~~ 160 (241)
|++.|.++++.+++.|+++++++++++.+++++++++|.|++++++|||++++||+|||+ +||+||.+||.|++.++++
T Consensus 81 D~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rP~~v~~lvaG~D~-~gp~Ly~id~~G~~~~~~~ 159 (233)
T 1iru_B 81 DYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNE-GRPYLFQSDPSGAYFAWKA 159 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCSEEEEEEEECS-SSEEEEEECTTSCEEEBSE
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCCCCcEEEEEEEEEeC-CCCeEEEECCCCCEEEeeE
Confidence 999999999999999999999999999999999999999999989999999999999995 7899999999999999999
Q ss_pred EeeCCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhcccCCCCcEEEEEEEcCCCcEEEcCHHHHHHHHHhhh
Q 026223 161 TSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAIS 238 (241)
Q Consensus 161 ~aiG~gs~~~~~~Le~~~~~~~~~s~~ea~~la~~~l~~~~~~d~~~~~iei~ii~~~~~~~k~l~~~ei~~~l~~i~ 238 (241)
+|+|+|+++++++||+.| +++||++||++++++||..+.++|...++++|++|++++ |++++++||++++++|.
T Consensus 160 ~aiG~gs~~a~~~Le~~~--~~~ms~eea~~la~~al~~~~~~d~sg~~i~v~vi~~~g--~~~l~~~ei~~~~~~~~ 233 (233)
T 1iru_B 160 TAMGKNYVNGKTFLEKRY--NEDLELEDAIHTAILTLKESFEGQMTEDNIEVGICNEAG--FRRLTPTEVKDYLAAIA 233 (233)
T ss_dssp EEESTTHHHHHHHHHHHC--CTTCCHHHHHHHHHHHHHTTCCSCCCSSSEEEEEEETTE--EEECCHHHHHHHHTTCC
T ss_pred EEECCCCHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEEECCC--EEECCHHHHHHHHHhcC
Confidence 999999999999999996 578999999999999999999999554589999999986 99999999999998763
No 5
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=100.00 E-value=5e-59 Score=394.14 Aligned_cols=229 Identities=29% Similarity=0.541 Sum_probs=216.0
Q ss_pred CCCCccceecCCCceeEE-----EEccCCceEEEEEcCCEEEEEEeccCCCCccc-CCCcceeEEecCcEEEEEecchHH
Q 026223 8 GYDRHITIFSPEGRLFQV-----AVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLD-HTSVTHLFPITKYLGLLATGMTAD 81 (241)
Q Consensus 8 ~yd~~~t~fsp~G~l~Q~-----a~~~~G~t~igi~~~dgVvla~d~~~~~~l~~-~~~~~Ki~~i~~~i~~~~sG~~~D 81 (241)
+||+++|+|||||||||+ |++ +|+|+|||+++||||||+|+|.+.+++. .++.+||++|+++++|++||+.+|
T Consensus 4 ~yd~~~t~fsp~Grl~QvEyA~~av~-~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD 82 (244)
T 1ryp_C 4 RYDSRTTIFSPEGRLYQVEYALESIS-HAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTAD 82 (244)
T ss_dssp GGCCCTTCBCTTSCBHHHHHHHHHHT-TSCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESSSSEEEEEEECHHH
T ss_pred ccCCCCceECcCCeeHHHHhHHHHHh-cCCcEEEEEeCCEEEEEEeeccCCcCccCCCCCCcEEEECCCEEEEEEEcHHH
Confidence 899999999999999999 677 6999999999999999999999966666 789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcceeeeeEE
Q 026223 82 ARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKAT 161 (241)
Q Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~~~~ 161 (241)
++.|.++++.+++.|+++++++++++.+++++++++|.|++++++|||++++||+|||++++|+||.+||.|++.+++++
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~ 162 (244)
T 1ryp_C 83 AEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAI 162 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEETTTEEEEEEECTTCCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccceEEEEEEEEEcCCCCCEEEEECCCccEEeeeEE
Confidence 99999999999999999999999999999999999999999999999999999999995489999999999999999999
Q ss_pred eeCCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhcc-cCCCCcEEEEEEE--cCCCc--EEEcCHHHHHHHHHh
Q 026223 162 SAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQE-DFKASEIEVGVVS--KENPE--FRVLSIEEIDEHLTA 236 (241)
Q Consensus 162 aiG~gs~~~~~~Le~~~~~~~~~s~~ea~~la~~~l~~~~~~-d~~~~~iei~ii~--~~~~~--~k~l~~~ei~~~l~~ 236 (241)
|+|+|+++++++||+.| +++||++||++++++||..+.++ +....+++|++|+ +++++ |+.++++||++++..
T Consensus 163 aiGsgs~~a~~~Le~~~--~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~~~~~~~~~~l~~~ei~~~~~~ 240 (244)
T 1ryp_C 163 SVGANTSAAQTLLQMDY--KDDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGANDGEVYQKIFKPQEIKDILVK 240 (244)
T ss_dssp EESTTHHHHHHHHHHHC--CTTCCHHHHHHHHHHHHHHHCSSSSCCGGGEEEEEEECCSSSSSCEEEECCHHHHHHHHHH
T ss_pred EECCCcHHHHHHHHHhh--hcCCCHHHHHHHHHHHHHHHhccccCCCCcEEEEEEEeecCCCceeEEECCHHHHHHHHHH
Confidence 99999999999999996 57999999999999999999999 5543479999999 88765 999999999999998
Q ss_pred hhc
Q 026223 237 ISE 239 (241)
Q Consensus 237 i~~ 239 (241)
|..
T Consensus 241 ~~~ 243 (244)
T 1ryp_C 241 TGI 243 (244)
T ss_dssp HTC
T ss_pred hhc
Confidence 863
No 6
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=100.00 E-value=8.1e-59 Score=396.42 Aligned_cols=230 Identities=29% Similarity=0.508 Sum_probs=215.8
Q ss_pred CCCCccceecCCCceeEE-----EEccCCceEEEEEcCCEEEEEEeccCCCCcccC-CCcceeEEecCcEEEEEecchHH
Q 026223 8 GYDRHITIFSPEGRLFQV-----AVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDH-TSVTHLFPITKYLGLLATGMTAD 81 (241)
Q Consensus 8 ~yd~~~t~fsp~G~l~Q~-----a~~~~G~t~igi~~~dgVvla~d~~~~~~l~~~-~~~~Ki~~i~~~i~~~~sG~~~D 81 (241)
+||+++|+|||||||||| |++ +|+|+|||+++||||||+|+|++.+++.. ++.+||++|+++++|++||+.+|
T Consensus 4 ~yd~~~t~fsp~Grl~QvEYA~~av~-~Gtt~vgi~~~dgVVlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD 82 (261)
T 1iru_C 4 RYDSRTTIFSPEGRLYQVEYAMEAIG-HAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSD 82 (261)
T ss_dssp TTCCCTTCCCTTSCCHHHHHHHHHHT-TSCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECSSSEEEEEEECHHH
T ss_pred ccCCCCccCCCCCeehHHHhHHHHHh-cCCcEEEEEeCCEEEEEEecccCCcccccCCCCccEEEecCCEEEEEeEcHHH
Confidence 899999999999999999 677 69999999999999999999999555554 45899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcceeeeeEE
Q 026223 82 ARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKAT 161 (241)
Q Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~~~~ 161 (241)
++.|.++++.+++.|+++++++++++.+++++++++|.|++++++|||++++||||||+++||+||.+||+|++.+++++
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~ 162 (261)
T 1iru_C 83 ANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKAT 162 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEETTTEEEEEEEETTTEEEECSEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcCcceEEEEEEEEeCCCCcEEEEECCCceEEeeeeE
Confidence 99999999999999999999999999999999999999999989999999999999996578999999999999999999
Q ss_pred eeCCChHHHHHHHHhhccCCC-CCCHHHHHHHHHHHHHHhhcccCCCC-cEEEEEEEcCCCc--EEEcCHHHHHHHHHhh
Q 026223 162 SAGLKEQEAINFLEKKMKNDP-AFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPE--FRVLSIEEIDEHLTAI 237 (241)
Q Consensus 162 aiG~gs~~~~~~Le~~~~~~~-~~s~~ea~~la~~~l~~~~~~d~~~~-~iei~ii~~~~~~--~k~l~~~ei~~~l~~i 237 (241)
|+|+|+.+++++||+.| ++ +||++||++++++||..+.++|..++ +++|++|+++++. |++++++||++++..+
T Consensus 163 aiGsgs~~a~~~Le~~~--~~~~ms~eeA~~la~~al~~~~~~d~~sg~~i~v~vi~~~~~~~~~~~l~~~ei~~~l~~~ 240 (261)
T 1iru_C 163 CIGNNSAAAVSMLKQDY--KEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLIKKH 240 (261)
T ss_dssp EESTTTTHHHHHHHHHC--CTTCCCHHHHHHHHHHHHHHSSSCTTCCSTTCEEEEEECCSSSCEEEECCHHHHHHHHHHH
T ss_pred EeCcccHHHHHHHHHhh--ccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEcCCCeeeEEECCHHHHHHHHHHH
Confidence 99999999999999996 56 89999999999999999999987776 7999999998753 8999999999999998
Q ss_pred hcc
Q 026223 238 SER 240 (241)
Q Consensus 238 ~~~ 240 (241)
.++
T Consensus 241 ~~~ 243 (261)
T 1iru_C 241 EEE 243 (261)
T ss_dssp HTT
T ss_pred Hhc
Confidence 643
No 7
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=100.00 E-value=5.7e-59 Score=391.27 Aligned_cols=223 Identities=37% Similarity=0.617 Sum_probs=206.2
Q ss_pred CCCCCccceecCCCceeEE-----EEccCCceEEEEEcCCEEEEEEeccCCCCcccCCCcceeEEecCcEEEEEecchHH
Q 026223 7 GGYDRHITIFSPEGRLFQV-----AVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 81 (241)
Q Consensus 7 ~~yd~~~t~fsp~G~l~Q~-----a~~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D 81 (241)
++||+++|+|||||||||+ |++ +|+|+|||+++||||||+|+|.+.+++..++.+||++|+++++|++||+.+|
T Consensus 6 ~~yd~~~t~fsp~Grl~QvEya~~av~-~Gtt~vgi~~~dgVvlaaD~r~~~~~~~~~~~~Ki~~i~~~i~~~~aG~~aD 84 (233)
T 1yar_A 6 MAYSRAITVFSPDGRLFQVEYAREAVK-KGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYVAAVTSGLVAD 84 (233)
T ss_dssp -------CCCCTTSCCHHHHHHHHHHT-TSCCEEEEEETTEEEEEECCCCCCTTBCSTTCCSEEEEETTEEEEEEEBHHH
T ss_pred ccCCCCCceECcCCeeHHHHhHHHHHh-cCCcEEEEEECCEEEEEEeccCCcccccccccCeEEEecCCEEEEEeeCHHH
Confidence 5899999999999999999 677 6999999999999999999999977888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcceeeeeEE
Q 026223 82 ARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKAT 161 (241)
Q Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~~~~ 161 (241)
++.|.++++.+++.|+++++++++++.+++++++++|.|++++++|||++++||+|||+ ++|+||.+||.|++.+++++
T Consensus 85 ~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~ 163 (233)
T 1yar_A 85 ARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQ-IGPRLFDCDPAGTINEYKAT 163 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECS-SCEEEEEECTTCCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCcCcceEEEEEEEEeC-CCCEEEEECCCCCEEeeeEE
Confidence 99999999999999999999999999999999999999999989999999999999997 79999999999999999999
Q ss_pred eeCCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhcccCCCCcEEEEEEEcCCCcEEEcCHHHHHHHH
Q 026223 162 SAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHL 234 (241)
Q Consensus 162 aiG~gs~~~~~~Le~~~~~~~~~s~~ea~~la~~~l~~~~~~d~~~~~iei~ii~~~~~~~k~l~~~ei~~~l 234 (241)
|+|+|+++++++||+.| +++||++||++++++||..+.++|+...+++|++|+++++ |++++++||+++|
T Consensus 164 aiG~gs~~a~~~Le~~~--~~~~s~eea~~la~~al~~~~~~d~s~~~i~v~vi~~~~~-~~~~~~~ei~~~l 233 (233)
T 1yar_A 164 AIGSGKDAVVSFLEREY--KENLPEKEAVTLGIKALKSSLEEGEELKAPEIASITVGNK-YRIYDQEEVKKFL 233 (233)
T ss_dssp EESTTHHHHHHHHHHHC--CTTCCHHHHHHHHHHHHHHTSCSSCCCCCCEEEEEETTSC-CEECCHHHHHTTC
T ss_pred EEcCCcHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC-EEECCHHHHHhhC
Confidence 99999999999999996 5799999999999999999999998544899999999975 9999999998763
No 8
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=100.00 E-value=1.7e-58 Score=390.19 Aligned_cols=228 Identities=34% Similarity=0.576 Sum_probs=213.0
Q ss_pred CCCCccceecCCCceeEE-----EEccCCceEEEEEcCCEEEEEEeccCCCCcccCC-CcceeEEecCcEEEEEecchHH
Q 026223 8 GYDRHITIFSPEGRLFQV-----AVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHT-SVTHLFPITKYLGLLATGMTAD 81 (241)
Q Consensus 8 ~yd~~~t~fsp~G~l~Q~-----a~~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~-~~~Ki~~i~~~i~~~~sG~~~D 81 (241)
+||+++|+|||||||||| |++ +|+|+|||+++||||||+|+|++.+++..+ +.+||++|+++++|+++|+.+|
T Consensus 1 ~yd~~~t~fsp~Grl~QvEya~~av~-~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD 79 (241)
T 1ryp_D 1 GYDRALSIFSPDGHIFQVEYALEAVK-RGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNAD 79 (241)
T ss_dssp CCCCCCSCCBTTTBCHHHHHHHHHHT-TSCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEEEEECHHH
T ss_pred CCCCCceeECCCCcchHHHHHHHHHH-cCCCEEEEEeCCEEEEEEeeccCccCccccCCcCcEEEecCCEEEEEeecHHH
Confidence 699999999999999999 777 699999999999999999999996665554 8999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCccccceeeEEEEEcCC-CCcEEEEECCCcceeeeeE
Q 026223 82 ARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEE-CGPRLFKCDPAGHFFGHKA 160 (241)
Q Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~-~gp~Ly~iDp~G~~~~~~~ 160 (241)
++.|.++++.+++.|+++++++++++.+++++++++|.||+++++|||++++||+|||++ ++|+||.+||.|++.++++
T Consensus 80 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~ 159 (241)
T 1ryp_D 80 SRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSA 159 (241)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCSCEEEEECTTSCEEEBSE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHccCCCCCCcceeeEEEEEcCCCCCeeEEEECCCCCEEEeee
Confidence 999999999999999999999999999999999999999998889999999999999975 7899999999999999999
Q ss_pred EeeCCChHHHHHHHHhhccC-CCCCCHHHHHHHHHHHHHHhhcccCCCCcEEEEEEEcCCCcEEEcCHHHHHHHHHhhhc
Q 026223 161 TSAGLKEQEAINFLEKKMKN-DPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISE 239 (241)
Q Consensus 161 ~aiG~gs~~~~~~Le~~~~~-~~~~s~~ea~~la~~~l~~~~~~d~~~~~iei~ii~~~~~~~k~l~~~ei~~~l~~i~~ 239 (241)
+|+|+|+++++++||+.|+. +++||++||++++++||..+.+ ....+++|++|++++ +|+.++++||++++.++.+
T Consensus 160 ~aiG~gs~~a~~~Le~~~~~~~~~ms~eea~~l~~~al~~~~~--~sg~~i~v~vi~~~~-~~~~l~~~ei~~~~~~~~~ 236 (241)
T 1ryp_D 160 QTIGRNSKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVVQ--TGAKNIEITVVKPDS-DIVALSSEEINQYVTQIEQ 236 (241)
T ss_dssp EEESTTHHHHHHHHHTTCCTTSCCCSHHHHHHHHHHHHHHHHC--SCSTTEEEEEEETTT-EEEECCHHHHHHHHHHHTH
T ss_pred EEECCCcHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHhc--CCCCcEEEEEEECCC-cEEECCHHHHHHHHHHHhh
Confidence 99999999999999999733 6899999999999999999996 444489999999987 4999999999999998864
No 9
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=100.00 E-value=1.3e-58 Score=393.69 Aligned_cols=232 Identities=31% Similarity=0.456 Sum_probs=216.1
Q ss_pred CCCCCCCCccceecCCCceeEE-----EEccCCceEEEEEcCCEEEEEEeccCCCCcccCCCcceeEEecCcEEEEEecc
Q 026223 4 GSGGGYDRHITIFSPEGRLFQV-----AVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGM 78 (241)
Q Consensus 4 ~~~~~yd~~~t~fsp~G~l~Q~-----a~~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~ 78 (241)
+.+++||+++|+|||||||||| |++ +|+|+|||+++||||||+|+|++.+++..++.+||++|+++++|+++|+
T Consensus 2 ~~~~~yd~~~t~fsp~Grl~QvEyA~~av~-~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~KI~~i~~~i~~~~aG~ 80 (254)
T 1iru_G 2 SIGTGYDLSASTFSPDGRVFQVEYAMKAVE-NSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGL 80 (254)
T ss_dssp CCCSSTTSCTTCCCTTSCCHHHHHHHHHHH-TSCCEEEEECSSBEEEEEEEECSCTTBCTTTTCCEEEEETTEEEEEEEC
T ss_pred CcccccCCCCccCCcCCccHHHHhHHHHHh-cCCCEEEEEECCEEEEEEecccCCCCcCcCcCCcEEEECCCEEEEEecC
Confidence 3466899999999999999999 777 6999999999999999999999966666788999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcceeee
Q 026223 79 TADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGH 158 (241)
Q Consensus 79 ~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~ 158 (241)
.+|++.|.++++.+++.|+++++++++++.+++++++++|.|++++++|||++++||||||++++|+||++||.|++.++
T Consensus 81 ~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~ 160 (254)
T 1iru_G 81 LADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGY 160 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEETTTEEEEEEECTTCCEEEB
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccccccccceEEEEEEEEeCCCCcEEEEEcCCCCEEee
Confidence 99999999999999999999999999999999999999999999988999999999999995589999999999999999
Q ss_pred eEEeeCCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhcccCCCC-cEEEEEEEcCCC-cEEEcCHHHHHHHHHh
Q 026223 159 KATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENP-EFRVLSIEEIDEHLTA 236 (241)
Q Consensus 159 ~~~aiG~gs~~~~~~Le~~~~~~~~~s~~ea~~la~~~l~~~~~~d~~~~-~iei~ii~~~~~-~~k~l~~~ei~~~l~~ 236 (241)
+++|+|+|+++++++||+.| +++||++||++++++||+.+.+++..++ +++|++|+++.. +|+++++++|+++++.
T Consensus 161 ~~~aiGsgs~~a~~~Le~~~--~~~ms~eea~~la~~al~~~~~~~~~~~~~iev~vi~~~~~g~~~~l~~~~i~~~~~~ 238 (254)
T 1iru_G 161 WGCAIGKARQAAKTEIEKLQ--MKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGRHEIVPKDIREEAEKY 238 (254)
T ss_dssp SEEEESTTHHHHHHHHTTSC--GGGCCHHHHHHHHHHHHHHHSCSSSSCCEEEEEEECBTTTTTCCEECCHHHHHHHHHH
T ss_pred eeEEecCccHHHHHHHHHhc--cCCCCHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEEcCCCCCeEECCHHHHHHHHHH
Confidence 99999999999999999986 5789999999999999999998876555 799999998732 4999999999999987
Q ss_pred hh
Q 026223 237 IS 238 (241)
Q Consensus 237 i~ 238 (241)
+.
T Consensus 239 ~~ 240 (254)
T 1iru_G 239 AK 240 (254)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 10
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=100.00 E-value=3.5e-58 Score=389.37 Aligned_cols=231 Identities=35% Similarity=0.582 Sum_probs=214.3
Q ss_pred CCCCCCCCCCCccceecCCCceeEE-----EEccCCceEEEEEcCCEEEEEEeccCCCCcccCCCcceeEEecCcEEEEE
Q 026223 1 MSRGSGGGYDRHITIFSPEGRLFQV-----AVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLA 75 (241)
Q Consensus 1 ~~~~~~~~yd~~~t~fsp~G~l~Q~-----a~~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~ 75 (241)
|.|.+ ++||+++|+|||||||||+ |++ +|+|+|||+++||||||+|+|++.+++..++.+||++|++++++++
T Consensus 1 ~~~~~-~~yd~~~t~fsp~Grl~QvEya~~av~-~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~KI~~i~~~i~~~~ 78 (246)
T 1j2p_A 1 MHLPQ-MGYDRAITVFSPDGRLFQVEYAREAVK-RGATAIGIKCKEGVILIADKRVGSKLLEKDTIEKIYKIDEHICAAT 78 (246)
T ss_dssp ---CC-TTSSSCTTCCCTTSCCHHHHHHHHHHH-TSCCEEEEEETTEEEEEEECCCSCTTBCGGGCCSEEECSSSEEEEE
T ss_pred CCccc-cCcCCCCceECCCCeehHHHhHHHHHH-cCCcEEEEEECCEEEEEEeccCCccccccCccCcEEEECCCEEEEE
Confidence 44433 3899999999999999999 777 6999999999999999999999987887889999999999999999
Q ss_pred ecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcce
Q 026223 76 TGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHF 155 (241)
Q Consensus 76 sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~ 155 (241)
+|+.+|++.|.++++.+++.|+++++++++++.+++++++++|.|++++++|||++++||+||| ++|+||.+||.|++
T Consensus 79 aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D--~gp~Ly~idp~G~~ 156 (246)
T 1j2p_A 79 SGLVADARVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVN--EVPKLYETDPSGAL 156 (246)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEES--SSEEEEEECTTCCE
T ss_pred eEccHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCcccccEEEEEEEEC--CCCEEEEECCCceE
Confidence 9999999999999999999999999999999999999999999999998999999999999999 68999999999999
Q ss_pred eeeeEEeeCCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhcccCCCC-cEEEEEEE-cCCCcEEEcCHHHHHHH
Q 026223 156 FGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVS-KENPEFRVLSIEEIDEH 233 (241)
Q Consensus 156 ~~~~~~aiG~gs~~~~~~Le~~~~~~~~~s~~ea~~la~~~l~~~~~~d~~~~-~iei~ii~-~~~~~~k~l~~~ei~~~ 233 (241)
.+++++|+|+|+++++++||+.| +++||++||++++++||..+.++ ..++ +++|++|+ +++ +|++++++||+++
T Consensus 157 ~~~~~~aiGsgs~~a~~~Le~~~--~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~-~~~~l~~~ei~~~ 232 (246)
T 1j2p_A 157 LEYKATAIGMGRMAVTEFFEKEY--RDDLSFDDAMVLGLVAMGLSIES-ELVPENIEVGYVKVDDR-TFKEVSPEELKPY 232 (246)
T ss_dssp EEBSEEEESTTHHHHHHHHHHHC--CTTCCHHHHHHHHHHHHHHHHTS-CCCGGGEEEEEEETTTC-CCEECCHHHHHHH
T ss_pred EeeeEEEECCCcHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEEEEcCCC-ceEECCHHHHHHH
Confidence 99999999999999999999996 57999999999999999999988 4455 79999999 655 5999999999999
Q ss_pred HHhhhc
Q 026223 234 LTAISE 239 (241)
Q Consensus 234 l~~i~~ 239 (241)
++++.+
T Consensus 233 ~~~~~~ 238 (246)
T 1j2p_A 233 VERANE 238 (246)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998863
No 11
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=100.00 E-value=2e-58 Score=389.82 Aligned_cols=231 Identities=31% Similarity=0.585 Sum_probs=211.3
Q ss_pred CCCCCCCCCCCccceecCCCceeEE-----EEccCCceEEEEEcCCEEEEEEeccCCCCcccCCCcceeEEecCcEEEEE
Q 026223 1 MSRGSGGGYDRHITIFSPEGRLFQV-----AVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLA 75 (241)
Q Consensus 1 ~~~~~~~~yd~~~t~fsp~G~l~Q~-----a~~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~ 75 (241)
|-|+. ++||+++|+|||||||||+ |++ +|+|+|||+++||||||+|+|++.+++..++.+||++|+++++|++
T Consensus 1 ~~m~~-~~yd~~~t~fsp~Grl~QvEya~~av~-~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~Ki~~i~~~i~~~~ 78 (241)
T 1iru_E 1 MFLTR-SEYDRGVNTFSPEGRLFQVEYDIEAIK-LGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAM 78 (241)
T ss_dssp --------CCCCTTCBCTTSCBHHHHHHHHHHT-TSCCEEEEEETTEEEEEEECCCCCTTBCTTSCCSEEEEETTEEEEE
T ss_pred CCCcc-CCCCCCCceECCCCccHHHHHHHHHHH-cCCcEEEEEcCCEEEEEEecccCCcCcCccccceEEEEcCCEEEEE
Confidence 43443 5899999999999999999 677 6999999999999999999999966666889999999999999999
Q ss_pred ecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccC-----ccccceeeEEEEEcCCCCcEEEEEC
Q 026223 76 TGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAY-----MRPLGVVAMVLSIDEECGPRLFKCD 150 (241)
Q Consensus 76 sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~-----~rP~~v~~iv~G~d~~~gp~Ly~iD 150 (241)
||+.+|++.+.++++.+++.|+++++++++++.+++++++++|.|+++.+ +|||++++||+|||+ ++|+||.+|
T Consensus 79 aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~y~~~~~~~~l~~rp~~v~~lvaG~D~-~gp~Ly~id 157 (241)
T 1iru_E 79 SGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDE-KGPQLFHMD 157 (241)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEET-TEEEEEEEC
T ss_pred eeChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccccccccccccceEEEEEEEEeC-CCCEEEEEC
Confidence 99999999999999999999999999999999999999999999998877 899999999999994 899999999
Q ss_pred CCcceeeeeEEeeCCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhcccCCCCcEEEEEEEcCCCcEEEcCHHHH
Q 026223 151 PAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEI 230 (241)
Q Consensus 151 p~G~~~~~~~~aiG~gs~~~~~~Le~~~~~~~~~s~~ea~~la~~~l~~~~~~d~~~~~iei~ii~~~~~~~k~l~~~ei 230 (241)
|.|++.+++++|+|+|+++++++||+.| +++||++||++++++||..+.+++....+++|++|+++++ |+.++++||
T Consensus 158 p~G~~~~~~~~aiGsgs~~a~~~Le~~~--~~~ms~eea~~la~~al~~~~~~~~sg~~i~v~vi~~~~~-~~~l~~~ei 234 (241)
T 1iru_E 158 PSGTFVQCDARAIGSASEGAQSSLQELY--HKSMTLKEAIKSSLIILKQVMEEKLNATNIELATVQPGQN-FHMFTKEEL 234 (241)
T ss_dssp TTSCEEEBSEEEESTTHHHHHHHHHHHC--CTTCCHHHHHHHHHHHHHHHCSSCCCTTSEEEEEECSSSC-CEECCHHHH
T ss_pred CCCcEEecceEEECCCcHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEEECCCC-eEECCHHHH
Confidence 9999999999999999999999999996 5789999999999999999998844434899999999987 999999999
Q ss_pred HHHHHhh
Q 026223 231 DEHLTAI 237 (241)
Q Consensus 231 ~~~l~~i 237 (241)
++++++|
T Consensus 235 ~~~~~~~ 241 (241)
T 1iru_E 235 EEVIKDI 241 (241)
T ss_dssp HHHHTTC
T ss_pred HHHHHhC
Confidence 9999764
No 12
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=100.00 E-value=2.6e-58 Score=390.59 Aligned_cols=226 Identities=35% Similarity=0.579 Sum_probs=213.7
Q ss_pred CCCccceecCCCceeEE-----EEccCCceEEEEEcCCEEEEEEeccCCCCcccCCCcceeEEecCcEEEEEecchHHHH
Q 026223 9 YDRHITIFSPEGRLFQV-----AVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADAR 83 (241)
Q Consensus 9 yd~~~t~fsp~G~l~Q~-----a~~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~ 83 (241)
||+++|+|||||||||| |++ +|+|+|||+++||||||+|+|.+.+++..++.+||++|+++++|+++|+.+|++
T Consensus 3 yd~~~t~fsp~Grl~QvEYA~~av~-~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~ 81 (248)
T 1iru_D 3 YDRAITVFSPDGHLFQVEYAQEAVK-KGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADAR 81 (248)
T ss_dssp CCCCCSCCCTTSCCHHHHHHHHHHH-TSCCEEEECCSSEEEEEECCCCCCSSSCGGGGCSEEESSSSCEEEEEECHHHHH
T ss_pred ccCCCceECCCCcchHHHHHHHHHH-cCCCEEEEEeCCEEEEEEeecccccCccCCCCCcEEEEcCCEEEEEeecHHHHH
Confidence 99999999999999999 777 699999999999999999999997788888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcceeeeeEEee
Q 026223 84 TLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSA 163 (241)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~~~~ai 163 (241)
.|.++++.+++.|+++++++++++.+++++++++|.|++++++|||++++||||||++++|+||.+||.|++.+++++|+
T Consensus 82 ~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~ai 161 (248)
T 1iru_D 82 IVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAI 161 (248)
T ss_dssp HHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECSSSCEEEEEECTTSCEEEBSEEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCcccccEEEEEEEEeCCCCcEEEEEcCCCcEEEeeEEEE
Confidence 99999999999999999999999999999999999999998999999999999999558999999999999999999999
Q ss_pred CCChHHHHHHHHhhccCCCCC--CHHHHHHHHHHHHHHhhcccCCCCcEEEEEEEcCCCcEEEcCHHHHHHHHHhhhcc
Q 026223 164 GLKEQEAINFLEKKMKNDPAF--TFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISER 240 (241)
Q Consensus 164 G~gs~~~~~~Le~~~~~~~~~--s~~ea~~la~~~l~~~~~~d~~~~~iei~ii~~~~~~~k~l~~~ei~~~l~~i~~~ 240 (241)
|+|+++++++||+.| +++| |++||++++++||..+.+ ....+++|++|+++++ |++++++||++++..+.++
T Consensus 162 G~gs~~a~~~Le~~~--~~~m~~s~eea~~la~~al~~~~~--~sg~~i~v~vi~~~g~-~~~l~~~ei~~~~~~~~~~ 235 (248)
T 1iru_D 162 GRGAKSVREFLEKNY--TDEAIETDDLTIKLVIKALLEVVQ--SGGKNIELAVMRRDQS-LKILNPEEIEKYVAEIEKE 235 (248)
T ss_dssp STTHHHHHHHHTTTC--CSSTTCSHHHHHHHHHHHHHTTSC--TTSTTCCEEEEESSSC-EECCCHHHHHHHTTTTTTT
T ss_pred CCCcHHHHHHHHHhh--cccccCCHHHHHHHHHHHHHHHHc--CCCCcEEEEEEECCCc-EEECCHHHHHHHHHHHHhc
Confidence 999999999999996 5789 999999999999999986 3344799999999874 9999999999999988754
No 13
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=100.00 E-value=9.5e-58 Score=393.59 Aligned_cols=228 Identities=29% Similarity=0.470 Sum_probs=210.5
Q ss_pred CCCCCCCccceecCCCceeEE-----EEccCCceEEEEEcCCEEEEEEeccCCCCcccCCCcceeEEecCcEEEEEecch
Q 026223 5 SGGGYDRHITIFSPEGRLFQV-----AVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMT 79 (241)
Q Consensus 5 ~~~~yd~~~t~fsp~G~l~Q~-----a~~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~ 79 (241)
.+++||+++|+|||||||||| |++ +|+|+|||+++||||||+|+|++.+++..+..+||++|+++++|+++|+.
T Consensus 4 ~~~~yd~~~t~fSP~Grl~QvEYA~kAv~-~GtT~Vgik~kdGVVlAaD~r~t~gl~~~~~~~KI~~I~d~i~~~~aG~~ 82 (288)
T 3nzj_F 4 IGTGYDLSNSVFSPDGRNFQVEYAVKAVE-NGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSGLI 82 (288)
T ss_dssp -CCCTTSSTTCCCTTSCCHHHHHHHHHHH-TSCCEEEEEETTEEEEEEEEEECCTTBCTTCSCCCEEETTTEEEEEEECH
T ss_pred CcCCccCCcccCCCCCchHHHHHHHHHHh-cCCcEEEEEECCEEEEEEcCCcccCCccccccceEEEEcCCEEEEecCcH
Confidence 378999999999999999999 787 69999999999999999999999767666778999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcceeeee
Q 026223 80 ADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHK 159 (241)
Q Consensus 80 ~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~~ 159 (241)
+|++.|.+++|.+++.|+++++++|+++.++++|++++|.||+++++|||+|++||||||+ +||+||++||+|++.+++
T Consensus 83 aD~~~l~~~lr~e~~~y~~~~~~~i~v~~lA~~l~~~l~~yt~~~~~rP~gv~~lvaG~D~-~Gp~Ly~iDp~G~~~~~~ 161 (288)
T 3nzj_F 83 PDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDK-NGAHLYMLEPSGSYWGYK 161 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEET-TEEEEEEECTTSCEEEBS
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEEEEeC-CCCEEEEECCCCCEEEcC
Confidence 9999999999999999999999999999999999999999999999999999999999998 789999999999999999
Q ss_pred EEeeCCChHHHHHHHHhhcc-CCCCCCHHHHHHHHHHHHHHhhcccCCCC-cEEEEEEEc--CCCcEEEcCHHHHHHHH
Q 026223 160 ATSAGLKEQEAINFLEKKMK-NDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSK--ENPEFRVLSIEEIDEHL 234 (241)
Q Consensus 160 ~~aiG~gs~~~~~~Le~~~~-~~~~~s~~ea~~la~~~l~~~~~~d~~~~-~iei~ii~~--~~~~~k~l~~~ei~~~l 234 (241)
++|+|+|+++++++||+.++ |+++||++||++++++||..+.+++..++ +++|+||++ +++.++.++.+++++.-
T Consensus 162 ~~aiGsgs~~a~~~Lek~~~~~~~~ms~eEAv~la~~al~~a~~~~~~~~~~iev~vIt~~~~~~~~~~vp~~~~~~~~ 240 (288)
T 3nzj_F 162 GAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDLLQEAI 240 (288)
T ss_dssp EEEESTTHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSEEEEEEEEEETTTSTTCCEECCHHHHHHHH
T ss_pred EEEEcCcHHHHHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEEecCCCceEEECCHHHHHHHH
Confidence 99999999999999999943 47899999999999999999999886665 799999998 34456778877777554
No 14
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=100.00 E-value=1e-57 Score=387.39 Aligned_cols=228 Identities=33% Similarity=0.542 Sum_probs=214.5
Q ss_pred CCCCCccceecCCCceeEE-----EEccCCceEEEEEcCCEEEEEEeccCCCCcccCCCcceeEEecCcEEEEEecchHH
Q 026223 7 GGYDRHITIFSPEGRLFQV-----AVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 81 (241)
Q Consensus 7 ~~yd~~~t~fsp~G~l~Q~-----a~~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D 81 (241)
.+||+++|+|||||||||| |++ +|+|+|||+++||||||+|+|++++++..++.+||++|+++++|++||+.+|
T Consensus 3 ~~yd~~~t~fsp~Grl~QvEyA~~av~-~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD 81 (250)
T 1ryp_B 3 DRYSFSLTTFSPSGKLGQIDYALTAVK-QGVTSLGIKATNGVVIATEKKSSSPLAMSETLSKVSLLTPDIGAVYSGMGPD 81 (250)
T ss_dssp CCCCSBSSCBCTTSCBHHHHHHHHHHH-TSCCEEEEEETTEEEEEEECCCSCSSBCGGGCCSSEEEETTEEEEEEECHHH
T ss_pred CcccCCceeECCCCccHHHHhHHHHHH-cCCcEEEEEECCEEEEEEeccCCCccccCcccCceEEECCCEEEEeeeCHHH
Confidence 3899999999999999999 777 6999999999999999999999999988889999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-HHHHhCCCCCHHHHHHHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcceeeeeE
Q 026223 82 ARTLVQQARYEAAE-FRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKA 160 (241)
Q Consensus 82 ~~~l~~~~~~~~~~-~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~~~ 160 (241)
++.|.++++.+++. |+..++.+++++.+++.+++++|.|+++.++|||++++||||||++++|+||.+||.|++.++++
T Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~ 161 (250)
T 1ryp_B 82 YRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKA 161 (250)
T ss_dssp HHHHHHHHHHHHHHTTHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEETTTEEEEEEECTTSCEEEBSE
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcccceEEEEEEEEcCCCCcEEEEECCCCCEEeece
Confidence 99999999999999 99999999999999999999999999988899999999999999767899999999999999999
Q ss_pred EeeCCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhcccCCCCcEEEEEEEcC--------------CCcEEEcC
Q 026223 161 TSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKE--------------NPEFRVLS 226 (241)
Q Consensus 161 ~aiG~gs~~~~~~Le~~~~~~~~~s~~ea~~la~~~l~~~~~~d~~~~~iei~ii~~~--------------~~~~k~l~ 226 (241)
+|+|+|+++++++||+.| +++||++||++++++||..+.+++....+++|++|+++ ++.|++++
T Consensus 162 ~aiGsgs~~a~~~Le~~~--~~~ms~eea~~la~~al~~~~~~~~sg~~i~v~vi~~~~~~~~~~~~~~~~~~~~~~~l~ 239 (250)
T 1ryp_B 162 TAIGKGSVAAKTFLEKRW--NDELELEDAIHIALLTLKESVEGEFNGDTIELAIIGDENPDLLGYTGIPTDKGPRFRKLT 239 (250)
T ss_dssp EEESTTHHHHHHHHHHHC--CTTCCHHHHHHHHHHHHHHHCCSCCSTTTEEEEEECSCCGGGTSEESCSSCCCCSEEECC
T ss_pred eEecCccHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHHHhccccCCCCEEEEEEEccccccccccccccCCCCCeEECC
Confidence 999999999999999996 57999999999999999999988765458999999986 23599999
Q ss_pred HHHHHHHHHhh
Q 026223 227 IEEIDEHLTAI 237 (241)
Q Consensus 227 ~~ei~~~l~~i 237 (241)
++||+++++++
T Consensus 240 ~~ei~~~l~~~ 250 (250)
T 1ryp_B 240 SQEINDRLEAL 250 (250)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHHhC
Confidence 99999999764
No 15
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=100.00 E-value=3.8e-58 Score=392.57 Aligned_cols=228 Identities=29% Similarity=0.534 Sum_probs=213.5
Q ss_pred CCCCCccceecCCCceeEE-----EEccCCceEEEEEcCCEEEEEEeccCCCCcccCCCcceeEEecCcEEEEEecchHH
Q 026223 7 GGYDRHITIFSPEGRLFQV-----AVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 81 (241)
Q Consensus 7 ~~yd~~~t~fsp~G~l~Q~-----a~~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D 81 (241)
.+||+++|+|||||||||+ |++ +|+|+|||+++||||||+|+|.+.++. ++.+||++|+++++|++||+.+|
T Consensus 4 ~~yd~~~t~fsP~Grl~QvEYA~~av~-~Gtt~vgi~~~dgVVlaaD~r~~~gl~--~~~~KI~~i~~~i~~~~aG~~aD 80 (263)
T 1iru_F 4 NQYDNDVTVWSPQGRIHQIEYAMEAVK-QGSATVGLKSKTHAVLVALKRAQSELA--AHQKKILHVDNHIGISIAGLTAD 80 (263)
T ss_dssp CTTTSCTTCCCTTSCCHHHHHHHHHHH-HSCCEEEEECSSEEEEEEECCCSSTTB--CCCCCEEEEETTEEEEEEECHHH
T ss_pred CCCCCCCccCCCCCeehHHHHHHHHHH-cCCcEEEEEeCCEEEEEEecccccccc--cchhcEEEEcCCEEEEEeCCHHH
Confidence 5899999999999999999 677 599999999999999999999997764 47799999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcceeeeeEE
Q 026223 82 ARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKAT 161 (241)
Q Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~~~~ 161 (241)
++.|.++++.+++.|+++++++++++.+++++++++|.|||++++|||++++||+|||+ +||+||++||+|++.+++++
T Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~t~~~~~RP~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~ 159 (263)
T 1iru_F 81 ARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDD-MGPHIFQTCPSANYFDCRAM 159 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEET-TEEEEEEECSSSCEEEESEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhcccccccceEEEEEEEEcC-CCCEEEEECCCCCEEEeeEE
Confidence 99999999999999999999999999999999999999999999999999999999997 78999999999999999999
Q ss_pred eeCCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhccc-CCCC-cEEEEEEEcCCCcEEEcCHHHHHHHHHhhhc
Q 026223 162 SAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQED-FKAS-EIEVGVVSKENPEFRVLSIEEIDEHLTAISE 239 (241)
Q Consensus 162 aiG~gs~~~~~~Le~~~~~~~~~s~~ea~~la~~~l~~~~~~d-~~~~-~iei~ii~~~~~~~k~l~~~ei~~~l~~i~~ 239 (241)
|+|+|+++++++||+.|++.++||++||++++++||..+.++| ..++ +++|++|+++++ |++++++||++++.++.+
T Consensus 160 aiGsgs~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd~~~sg~~iev~vi~~~~~-~~~l~~~ei~~~~~~~~~ 238 (263)
T 1iru_F 160 SIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLE-FTIYDDDDVSPFLEGLEE 238 (263)
T ss_dssp EESTTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCTTCCCCTTTEEEEEEETTEE-EEEECSGGGHHHHTTCCC
T ss_pred EcCcccHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhccccCCCCcEEEEEEECCCC-eEECCHHHHHHHHHHHhc
Confidence 9999999999999999853348999999999999999999998 3444 899999999864 999999999999998863
No 16
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=100.00 E-value=5.8e-58 Score=387.19 Aligned_cols=227 Identities=29% Similarity=0.530 Sum_probs=213.3
Q ss_pred CCccceecCCCceeEE-----EEccCCceEEEEEcCCEEEEEEeccCCCCcccCCCcceeEEecCcEEEEEecchHHHHH
Q 026223 10 DRHITIFSPEGRLFQV-----AVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADART 84 (241)
Q Consensus 10 d~~~t~fsp~G~l~Q~-----a~~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~ 84 (241)
|+++|+|||||||||| |++ +|+|+|||+++||||||+|+|.+.+++..++.+||++|+++++|++||+.+|++.
T Consensus 1 d~~~t~fsp~Grl~QvEyA~~av~-~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~ 79 (242)
T 1ryp_E 1 DRGVSTFSPEGRLFQVEYSLEAIK-LGSTAIGIATKEGVVLGVEKRATSPLLESDSIEKIVEIDRHIGCAMSGLTADARS 79 (242)
T ss_dssp CCCTTCBCTTSCBHHHHHHHHHHT-TSCCEEEEECSSCEEEEEECCCSSTTBCGGGCCCEEEEETTEEEEEEESGGGHHH
T ss_pred CCCCceECCCCcChHHHhHHHHHH-cCCCEEEEEECCEEEEEEeecCCCcCccCccCCceEEEcCCEEEEEeecHHHHHH
Confidence 7899999999999999 677 6999999999999999999999966666788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccC------ccccceeeEEEEEcCCCCcEEEEECCCcceeee
Q 026223 85 LVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAY------MRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGH 158 (241)
Q Consensus 85 l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~------~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~ 158 (241)
|.++++.+++.|+++++++++++.+++++++++|.||++++ +|||++++||+|||++++|+||.+||.|++.++
T Consensus 80 l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~~~~l~~RP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~ 159 (242)
T 1ryp_E 80 MIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRY 159 (242)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEETTTEEEEEEECTTSCEEEB
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccccccCcceEEEEEEEEeCCCCCEEEEECCCCCEecc
Confidence 99999999999999999999999999999999999999887 999999999999995588999999999999999
Q ss_pred eEEeeCCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhcccCCCCcEEEEEEEcCCCcEEEcCHHHHHHHHHhhh
Q 026223 159 KATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAIS 238 (241)
Q Consensus 159 ~~~aiG~gs~~~~~~Le~~~~~~~~~s~~ea~~la~~~l~~~~~~d~~~~~iei~ii~~~~~~~k~l~~~ei~~~l~~i~ 238 (241)
+++|+|+|+++++++||+.| +++||++||++++++||..+.+++....+++|++|++++. |++++++||+++++++.
T Consensus 160 ~~~aiGsgs~~a~~~Le~~~--~~~ms~eea~~la~~al~~~~~~~~sg~~i~v~vi~~~~~-~~~~~~~ei~~~~~~~~ 236 (242)
T 1ryp_E 160 NAKAIGSGSEGAQAELLNEW--HSSLTLKEAELLVLKILKQVMEEKLDENNAQLSCITKQDG-FKIYDNEKTAELIKELK 236 (242)
T ss_dssp SEEEESTTHHHHHHHHHHHC--CTTCCHHHHHHHHHHHHHHHCSSCCCTTSEEEEEEETTTE-EEECCHHHHHHHHHHHH
T ss_pred CEEEECCCCHHHHHHHHHhh--ccCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC-eEECCHHHHHHHHHHHh
Confidence 99999999999999999996 5799999999999999999999855445899999999986 99999999999999987
Q ss_pred cc
Q 026223 239 ER 240 (241)
Q Consensus 239 ~~ 240 (241)
++
T Consensus 237 ~~ 238 (242)
T 1ryp_E 237 EK 238 (242)
T ss_dssp HH
T ss_pred hh
Confidence 53
No 17
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=100.00 E-value=1.4e-57 Score=382.89 Aligned_cols=221 Identities=26% Similarity=0.451 Sum_probs=206.1
Q ss_pred CCCCccceecCCCceeEE-----EEccCCceEEEEEcCCEEEEEEeccCCCCcccCCCcceeEEecCcEEEEEecchHHH
Q 026223 8 GYDRHITIFSPEGRLFQV-----AVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADA 82 (241)
Q Consensus 8 ~yd~~~t~fsp~G~l~Q~-----a~~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~ 82 (241)
+||+++|+|||||||||+ |++ +|+|+|||+++||||||+|+|.+.++. ++.+||++|+++++|++||+.+|+
T Consensus 4 ~yd~~~t~fsp~Grl~QvEyA~~av~-~Gtt~vgi~~~dgVvlaaD~r~~~~l~--~~~~Ki~~i~~~i~~~~aG~~aD~ 80 (233)
T 1ryp_F 4 NYDGDTVTFSPTGRLFQVEYALEAIK-QGSVTVGLRSNTHAVLVALKRNADELS--SYQKKIIKCDEHMGLSLAGLAPDA 80 (233)
T ss_dssp HHSSCTTCCCTTSCCHHHHHHHHHHH-TSCCEEEEECSSEEEEEEECCCSSTTB--CCCCCEEEEETTEEEEEEECHHHH
T ss_pred cccCCCccCCCCCeehHHHHHHHHHH-cCCCEEEEEcCCEEEEEEEeccccccc--cccCcEEEEcCCEEEEEEechHHH
Confidence 699999999999999999 677 699999999999999999999997765 477999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcceeeeeEEe
Q 026223 83 RTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATS 162 (241)
Q Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~~~~a 162 (241)
+.|.++++.+++.|+++++++|+++.+++++++++|.|||+.++|||++++||||||+ +||+||++||+|++.+++++|
T Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~a 159 (233)
T 1ryp_F 81 RVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDK-SGAHLLEFQPSGNVTELYGTA 159 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEET-TEEEEEEECTTSCEEEESEEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCCcCcceEEEEEEEeC-CcCEEEEECCCCCeeeeeEEE
Confidence 9999999999999999999999999999999999999999999999999999999997 789999999999999999999
Q ss_pred eCCChHHHHHHHHhhccCCCCC--CHHHHHHHHHHHHHHhhccc-CCCC-cEEEEEEEcCCCcEEEcCHHHHHHHH
Q 026223 163 AGLKEQEAINFLEKKMKNDPAF--TFQETVQTAISTLQSVLQED-FKAS-EIEVGVVSKENPEFRVLSIEEIDEHL 234 (241)
Q Consensus 163 iG~gs~~~~~~Le~~~~~~~~~--s~~ea~~la~~~l~~~~~~d-~~~~-~iei~ii~~~~~~~k~l~~~ei~~~l 234 (241)
+|+|+++++++||+.|++.++| |++||+++++++|..+. +| ..++ +++|++|+++++ |++++++||+++|
T Consensus 160 iG~gs~~a~~~Le~~~~~~~~m~~s~eea~~~a~~al~~~~-~d~~~s~~~i~v~vi~~~~~-~~~l~~~ei~~~l 233 (233)
T 1ryp_F 160 IGARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSL-RDESLTVDNLSIAIVGKDTP-FTIYDGEAVAKYI 233 (233)
T ss_dssp ESTTHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHTTSC-CSSCCCTTTEEEEEEETTEE-EEEEEGGGGGGGC
T ss_pred ECCCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHh-hcccCCCCcEEEEEEECCCC-EEECCHHHHHhhC
Confidence 9999999999999998532389 99999999999999999 66 4344 899999999864 9999999998763
No 18
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=100.00 E-value=2.2e-56 Score=377.91 Aligned_cols=230 Identities=28% Similarity=0.461 Sum_probs=208.0
Q ss_pred CCCCCCccceecCCCceeEE-----EEccCCceEEEEEcCCEEEEEEeccCCCCcccCCCcceeEEecCcEEEEEecchH
Q 026223 6 GGGYDRHITIFSPEGRLFQV-----AVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTA 80 (241)
Q Consensus 6 ~~~yd~~~t~fsp~G~l~Q~-----a~~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~ 80 (241)
+++||+++|+|||||||||+ |++ +|+|+|||+++||||||+|+|.+.+++..+..+||++|+++++|++||+.+
T Consensus 1 ~~~yd~~~t~fsp~Grl~QvEya~~av~-~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~KI~~i~~~i~~~~aG~~a 79 (244)
T 1ryp_G 1 GTGYDLSNSVFSPDGRNFQVEYAVKAVE-NGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSGLIP 79 (244)
T ss_dssp CCCTTSSTTCCCTTSCCHHHHHHHHHHH-TSCCEEEEEETTEEEEEEEEECCCTTBCTTTSCCCEEETTTEEEEEEECHH
T ss_pred CCCccCCcccCCcCCchHHHHhHHHHHH-CCCCEEEEEECCEEEEEEecccCCCCccccccCceEEecCCEEEEEcccHH
Confidence 45899999999999999999 777 699999999999999999999996666666669999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcceeeeeE
Q 026223 81 DARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKA 160 (241)
Q Consensus 81 D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~~~ 160 (241)
|++.|.++++.+++.|+++++++++++.+++++++++|.||+++++|||++++||+|||+ +||+||.+||+|++.++++
T Consensus 80 D~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~ 158 (244)
T 1ryp_G 80 DGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDK-NGAHLYMLEPSGSYWGYKG 158 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEET-TEEEEEEECTTSCEEEBSE
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccCceEEEEEEEEeC-CcCEEEEECCCCCEEEeeE
Confidence 999999999999999999999999999999999999999999988999999999999996 7999999999999999999
Q ss_pred EeeCCChHHHHHHHHhhcc-CCCCCCHHHHHHHHHHHHHHhhcccCCCC-cEEEEEEEc-CCCcEEEcCHHHHHHHHHhh
Q 026223 161 TSAGLKEQEAINFLEKKMK-NDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSK-ENPEFRVLSIEEIDEHLTAI 237 (241)
Q Consensus 161 ~aiG~gs~~~~~~Le~~~~-~~~~~s~~ea~~la~~~l~~~~~~d~~~~-~iei~ii~~-~~~~~k~l~~~ei~~~l~~i 237 (241)
+|+|+|+++++++||+.++ |+++||++||++++++||..+.++|..++ +++|++|++ +..+++.+.++++-+..++.
T Consensus 159 ~aiG~gs~~a~~~Le~~~~~~~~~ms~eea~~la~~al~~~~~~d~~s~~~iev~vi~~~~~~g~~~~~~~~~~~~~~~~ 238 (244)
T 1ryp_G 159 AATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDLLQEAIDF 238 (244)
T ss_dssp EEESTTHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSCEEEEEEEEETTTTTTSEEECCTHHHHHHHHH
T ss_pred EEECCChHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEEecCCCCeeeeChHHHHHHHHHH
Confidence 9999999999999999721 35789999999999999999999998776 799999997 22236676666665555543
No 19
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=5.5e-49 Score=327.54 Aligned_cols=202 Identities=23% Similarity=0.378 Sum_probs=189.7
Q ss_pred CceEEEEEcCCEEEEEEeccCC-CCcccCCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 026223 31 GVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVL 109 (241)
Q Consensus 31 G~t~igi~~~dgVvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 109 (241)
|+|+|||+++||||||+|+|.+ +.++..++.+||++|+++++|+++|+.+|++.|.++++.+++.|+++++++++++.+
T Consensus 1 Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~l 80 (219)
T 3h4p_a 1 MTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLAC 80 (219)
T ss_dssp -CCEEEEEETTEEEEECCCCEEETTEEEETTCCCEEEEETTEEEECCSCHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHH
T ss_pred CccEEEEEECCEEEEEEcCCcccCCEeeccccceeEEecCCEEEEeeEcHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 7899999999999999999999 678888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcceeeee-EEeeCCChHHHHHHHHhhccCCCCCCHHH
Q 026223 110 AKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHK-ATSAGLKEQEAINFLEKKMKNDPAFTFQE 188 (241)
Q Consensus 110 a~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~~-~~aiG~gs~~~~~~Le~~~~~~~~~s~~e 188 (241)
++++++++|.| ++|||++++||||||+++||+||++||+|++.+++ +.|+|+|+++++++||+.| +++||++|
T Consensus 81 a~~l~~~~~~~----~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~--~~~ms~ee 154 (219)
T 3h4p_a 81 ATLLSNILHSS----RMFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGY--DRDMSVEE 154 (219)
T ss_dssp HHHHHHHHHHT----TTTTCCCCCEEEEEETTTEEEEEEECSSCCEEECSSEEEESTTHHHHHHHHHTSC--CTTCCHHH
T ss_pred HHHHHHHHHHh----cCCCceEEEEEEEEeCCCCcEEEEECCCCceEecCCEEEEcCCHHHHHHHHHHhc--CCCCCHHH
Confidence 99999999866 36899999999999976789999999999999998 9999999999999999986 57999999
Q ss_pred HHHHHHHHHHHhhcccCCCC-cEEEEEEEcCCCcEEEcCHHHHHHHHHhhhcc
Q 026223 189 TVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSIEEIDEHLTAISER 240 (241)
Q Consensus 189 a~~la~~~l~~~~~~d~~~~-~iei~ii~~~~~~~k~l~~~ei~~~l~~i~~~ 240 (241)
|++++++||..+.++|..++ +++|++|++++ |++++++||+++|.++++.
T Consensus 155 a~~la~~al~~~~~rd~~sg~~i~v~vi~~~g--~~~l~~~ei~~~l~~~~~~ 205 (219)
T 3h4p_a 155 GIKLALNALKSAMERDTFSGNGISLAVITKDG--VKIFEDEEIEKILDSMKAK 205 (219)
T ss_dssp HHHHHHHHHHHHHTSCSSCCSCCCEEEEETTE--EEECCHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCC--eEEcCHHHHHHHHHHhhcc
Confidence 99999999999999998876 79999999984 9999999999999999854
No 20
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=100.00 E-value=1.3e-47 Score=318.77 Aligned_cols=203 Identities=24% Similarity=0.424 Sum_probs=187.4
Q ss_pred EEccCCceEEEEEcCCEEEEEEeccCC-CCcccCCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCC
Q 026223 26 AVKAAGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEM 104 (241)
Q Consensus 26 a~~~~G~t~igi~~~dgVvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~ 104 (241)
+++ +|+|+|||+++||||||+|+|.+ ++++..++.+||++|+++++|++||+.+|++.|.++++.+++.|++++++++
T Consensus 4 ~~~-~Gtt~vgi~~~dgVvlaaD~r~~~g~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 82 (217)
T 1yar_H 4 TLE-TGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNM 82 (217)
T ss_dssp ------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred CCC-CCccEEEEEeCCEEEEEEcCCCCCCCEEecCccCCeEEeCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 466 69999999999999999999999 6898889999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcceeeeeEEeeCCChHHHHHHHHhhccCCCCC
Q 026223 105 PVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAF 184 (241)
Q Consensus 105 ~~~~la~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~~~~aiG~gs~~~~~~Le~~~~~~~~~ 184 (241)
+++.+++++++.++.+ +.|||++++||+||| +||+||.+||+|++.+++++|+|+|+++++++||+.| +++|
T Consensus 83 ~v~~la~~l~~~~~~~----r~rp~~v~~lvaG~D--~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~--~~~~ 154 (217)
T 1yar_H 83 PIEAVATLLSNMLNQV----KYMPYMVQLLVGGID--TAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQY--SEKM 154 (217)
T ss_dssp CHHHHHHHHHHHHHHT----TTSCCCEEEEEEEES--SSEEEEEECTTCCEEEESEEEESTTHHHHHHHHHHHC--CTTC
T ss_pred CHHHHHHHHHHHHHhc----CCCCceEEEEEEEEC--CCCEEEEECCCCCeEecCEEEEcCCHHHHHHHHHhhc--ccCC
Confidence 9999999999999764 378999999999999 6899999999999999999999999999999999996 5799
Q ss_pred CHHHHHHHHHHHHHHhhcccCCCC-cEEEEEEEcCCCcEEEcCHHHHHHHHHhhh
Q 026223 185 TFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSIEEIDEHLTAIS 238 (241)
Q Consensus 185 s~~ea~~la~~~l~~~~~~d~~~~-~iei~ii~~~~~~~k~l~~~ei~~~l~~i~ 238 (241)
|++||++++++||..+.++|..++ +++|++|+++. +++.++++||++++.++.
T Consensus 155 s~eea~~la~~al~~~~~rd~~s~~~i~v~vi~~~~-g~~~~~~~ei~~~~~~~~ 208 (217)
T 1yar_H 155 TVDEGVDLVIRAISAAKQRDSASGGMIDVAVITRKD-GYVQLPTDQIESRIRKLG 208 (217)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTCCSCCEEEEEETTT-EEEECCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEECCC-CEEEcCHHHHHHHHHHHH
Confidence 999999999999999999997765 79999999944 399999999999999876
No 21
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=100.00 E-value=1.7e-47 Score=314.72 Aligned_cols=198 Identities=22% Similarity=0.371 Sum_probs=187.7
Q ss_pred ceEEEEEcCCEEEEEEeccCC-CCcccCCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026223 32 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 110 (241)
Q Consensus 32 ~t~igi~~~dgVvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 110 (241)
+|+|||+++||||||+|+|.+ ++++..++.+||++|+++++|+++|+.+|++.|.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (202)
T 1j2q_H 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIA 80 (202)
T ss_dssp CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEECCCcCcCCEEeeccccCEEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 589999999999999999999 6888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcceeeee-EEeeCCChHHHHHHHHhhccCCCCCCHHHH
Q 026223 111 KWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHK-ATSAGLKEQEAINFLEKKMKNDPAFTFQET 189 (241)
Q Consensus 111 ~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~~-~~aiG~gs~~~~~~Le~~~~~~~~~s~~ea 189 (241)
+++++.++.+ +.|||++++||+|||+ +||+||.+||+|++.+++ ++|+|+|+++++++||+.| +++||++||
T Consensus 81 ~~l~~~~~~~----r~rp~~~~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~~aiG~g~~~a~~~Le~~~--~~~~s~eea 153 (202)
T 1j2q_H 81 TLTSNLLNSY----RYFPYLVQLLIGGIDS-EGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRF--TPEIGVDEA 153 (202)
T ss_dssp HHHHHHHHHT----TTSCCCEEEEEEEEET-TEEEEEEECTTCCEEEESSEEEESTTHHHHHHHHHHHC--CTTCCHHHH
T ss_pred HHHHHHHHhh----CCCCceEEEEEEEEeC-CCCEEEEECCCCCeeecCCEEEEcCCHHHHHHHHHhhc--CCCcCHHHH
Confidence 9999999764 3789999999999997 789999999999999999 9999999999999999996 579999999
Q ss_pred HHHHHHHHHHhhcccCCCC-cEEEEEEEcCCCcEEEcCHHHHHHHHHhhh
Q 026223 190 VQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSIEEIDEHLTAIS 238 (241)
Q Consensus 190 ~~la~~~l~~~~~~d~~~~-~iei~ii~~~~~~~k~l~~~ei~~~l~~i~ 238 (241)
++++++||..+.++|..++ +++|++|++++ ++.++++||++++++++
T Consensus 154 ~~la~~al~~~~~~d~~s~~~i~v~vi~~~g--~~~l~~~ei~~~~~~~~ 201 (202)
T 1j2q_H 154 VELAVRAIYSAMKRDSASGDGIDVVKITEDE--FYQYSPEEVEQILAKFR 201 (202)
T ss_dssp HHHHHHHHHHHHTTCTTSCSCEEEEEECSSC--EEECHHHHHHHHGGGTT
T ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEEEeCCC--eEEeCHHHHHHHHHHhh
Confidence 9999999999999997765 79999999984 99999999999999875
No 22
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=100.00 E-value=2.5e-48 Score=331.02 Aligned_cols=215 Identities=16% Similarity=0.225 Sum_probs=189.0
Q ss_pred cceecCCCcee-EE-----EEccCCceEEEEEcCCEEEEEEeccCCCCcccCCCcceeEEecCcEEEEEecchHHHHHHH
Q 026223 13 ITIFSPEGRLF-QV-----AVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLV 86 (241)
Q Consensus 13 ~t~fsp~G~l~-Q~-----a~~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~ 86 (241)
+..|||||++. |+ |++ +|+|+|||+++||||||+|+| .++.+|||+|+++++|+++|+.+|++.|.
T Consensus 4 p~~~sPe~~~~~qvEYA~~av~-~Gtt~vgi~~~dgVVlaaD~r-------s~~~~KI~~I~d~i~~~~aG~~aD~~~l~ 75 (259)
T 1q5q_A 4 PYYASAEQIMRDRSELARKGIA-RGRSVVVLTFRDGVLFVAENP-------STALHKVSELYDRLGFAAVGKYNEFENLR 75 (259)
T ss_dssp -----CHHHHHHHHHHHHHHHH-TSCCEEEEECSSEEEEEECCS-------CSSSCSEEEEETTEEEEEEECHHHHHHHH
T ss_pred CcccCHHHHHHHHHHHHHHHHh-cCCcEEEEEeCCEEEEEEecC-------CCCcCcEEEeCCCEEEEEccCHHHHHHHH
Confidence 45789999995 88 777 699999999999999999998 36789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCC-CCCHHHHHHHHHH-HHHHhhhccCccccceeeEEEEEc--C-CCCcEEEEECCCccee-eeeE
Q 026223 87 QQARYEAAEFRFKYGY-EMPVDVLAKWIAD-KSQVYTQHAYMRPLGVVAMVLSID--E-ECGPRLFKCDPAGHFF-GHKA 160 (241)
Q Consensus 87 ~~~~~~~~~~~~~~~~-~~~~~~la~~ls~-~~~~~t~~~~~rP~~v~~iv~G~d--~-~~gp~Ly~iDp~G~~~-~~~~ 160 (241)
++++.+++.|++.++. +++++.+++++++ +.|.|+ .++|||+|++|||||| + ++||+||++||+|++. ++++
T Consensus 76 ~~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~q~yt--~~~rP~~v~~lvaG~D~~~~~~gp~Ly~idp~G~~~~~~~~ 153 (259)
T 1q5q_A 76 RAGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFT--EQPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHF 153 (259)
T ss_dssp HHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHH--HSSSCCCEEEEEEECCCSSCCCCCEEEEEETTSCEEEESSE
T ss_pred HHHHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHhc--cCCCCceEEEEEEEEcccCCCCCCEEEEECCCCceeeCCCE
Confidence 9999999999999984 9999999999999 778887 3688999999999999 3 4899999999999999 7899
Q ss_pred EeeCCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhh-----cccCCCCcEEEEEEEcCC--CcEEEcCHHHHHHH
Q 026223 161 TSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVL-----QEDFKASEIEVGVVSKEN--PEFRVLSIEEIDEH 233 (241)
Q Consensus 161 ~aiG~gs~~~~~~Le~~~~~~~~~s~~ea~~la~~~l~~~~-----~~d~~~~~iei~ii~~~~--~~~k~l~~~ei~~~ 233 (241)
+|+|+|++.++++||+.| +++||++||++++++||..+. ++|+...+++|++|++++ ++|+.++++||+++
T Consensus 154 ~aiG~gs~~a~~~Le~~~--~~~ms~eea~~la~~al~~~~~~~~~~rd~sg~~iev~vi~~~~~~~~~~~l~~~ei~~~ 231 (259)
T 1q5q_A 154 VVMGGTTEPIATAMRESY--RADLDLEAAVGIAVNALRQGGAGEGEKRNVDVASLEVAVLDQSRPRRAFRRIAGTALEQL 231 (259)
T ss_dssp EEESSSHHHHHHHHHHHC--CTTCCHHHHHHHHHHHHTTCC--------CCSSCSEEEEEETTSSSCCEEECCHHHHHTT
T ss_pred EEECCChHHHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHhhcccccccCCCCcEEEEEEECCCCcCCeEECCHHHHHHH
Confidence 999999999999999996 579999999999999999998 888843489999999985 24999999999999
Q ss_pred HHhhhc
Q 026223 234 LTAISE 239 (241)
Q Consensus 234 l~~i~~ 239 (241)
+.++.+
T Consensus 232 ~~~~~~ 237 (259)
T 1q5q_A 232 VPAEPA 237 (259)
T ss_dssp SCCC--
T ss_pred HHHhhh
Confidence 988764
No 23
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=100.00 E-value=4e-47 Score=321.15 Aligned_cols=201 Identities=15% Similarity=0.220 Sum_probs=180.6
Q ss_pred EEccCCceEEEEEcCCEEEEEEeccCCCCcccCCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhC-CCC
Q 026223 26 AVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYG-YEM 104 (241)
Q Consensus 26 a~~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~-~~~ 104 (241)
|++ +|+|+|||+++||||||+|+| .++.+|||+|++|++|+++|+.+|++.|.+.++.+++.|+++++ +++
T Consensus 23 av~-~GtT~vgi~~kdgVVlaadkr-------~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~l~~~~~~~~~i 94 (248)
T 3mi0_A 23 GIA-RAKSVVALAYAGGVLFVAENP-------SRSLQKISELYDRVGFAAAGKFNEFDNLRRGGIQFADTRGYAYDRRDV 94 (248)
T ss_dssp HHH-TSCCEEEEEETTEEEEEEECC-------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSCGGGC
T ss_pred HHh-CCCcEEEEEeCCEEEEEEeCC-------CCCCCCeEEECCCEEEEEccCHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 677 699999999999999999999 35789999999999999999999999999999999999999999 899
Q ss_pred CHHHHHHHHH-HHHHHhhhccCccccceeeEEEEEcC---CCCcEEEEECCCcceee-eeEEeeCCChHHHHHHHHhhcc
Q 026223 105 PVDVLAKWIA-DKSQVYTQHAYMRPLGVVAMVLSIDE---ECGPRLFKCDPAGHFFG-HKATSAGLKEQEAINFLEKKMK 179 (241)
Q Consensus 105 ~~~~la~~ls-~~~~~~t~~~~~rP~~v~~iv~G~d~---~~gp~Ly~iDp~G~~~~-~~~~aiG~gs~~~~~~Le~~~~ 179 (241)
+++.|+++|+ .+.|.||| ++|||+|++||+|||+ ++||+||++||+|++.+ ++++|+|+|++.++++||++|
T Consensus 95 ~v~~la~~l~~~l~q~yt~--~~rP~gv~~liaG~D~~~~~~gp~Ly~~Dp~G~~~~e~~~~a~Gsgs~~a~~~Le~~y- 171 (248)
T 3mi0_A 95 TGRQLANVYAQTLGTIFTE--QAKPYEVELCVAEVAHYGETKRPELYRITYDGSIADEPHFVVMGGTTEPIANALKESY- 171 (248)
T ss_dssp CHHHHHHHHHHHHHHHHHH--SSSCCCEEEEEEECCCTTCCCCCEEEEECTTSCEEEESSEEEESSCHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHHhcc--CCCCceEEEEEEEEcCCCCCCCCEEEEECCCeEEeecccEEEECccHHHHHHHHHhhc-
Confidence 9999999999 77899987 6899999999999997 47999999999999995 999999999999999999996
Q ss_pred CCCCCCHHHHHHHHHHHHHHhh-------cccCCCCcEEEEEEEcCC--CcEEEcCHHHHHHHHHhhh
Q 026223 180 NDPAFTFQETVQTAISTLQSVL-------QEDFKASEIEVGVVSKEN--PEFRVLSIEEIDEHLTAIS 238 (241)
Q Consensus 180 ~~~~~s~~ea~~la~~~l~~~~-------~~d~~~~~iei~ii~~~~--~~~k~l~~~ei~~~l~~i~ 238 (241)
+++||++||++++++||+.+. ++++...+++|++|++++ +.|+.|+++||++++.++.
T Consensus 172 -~~~mt~eeai~la~~aL~~~~~~~~~~~~~~~~~~~iev~vv~~~g~~~~f~~l~~~ei~~~l~~~~ 238 (248)
T 3mi0_A 172 -AENASLTDALRIAVAALRAGSADTSGGDQPTLGVASLEVAVLDANRPRRAFRRITGSALQALLVDQE 238 (248)
T ss_dssp -CTTCCHHHHHHHHHHHHHHC------------CCTTEEEEEEETTSSSCCEEECCHHHHHHTC----
T ss_pred -CCCCCHHHHHHHHHHHHHHHHhhcccCcccccCCCcEEEEEEECCCCcccEEECCHHHHHHHHHHcC
Confidence 679999999999999999999 667777799999999985 4699999999999998764
No 24
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=100.00 E-value=1.1e-46 Score=316.83 Aligned_cols=203 Identities=18% Similarity=0.193 Sum_probs=191.1
Q ss_pred ceEEEEEcCCEEEEEEeccCC-CCcccCCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026223 32 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 110 (241)
Q Consensus 32 ~t~igi~~~dgVvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 110 (241)
+|+|||+++||||||+|+|++ ++++..++.+||++|+++++|++||+.+|++.|.++++.+++.|+++++++++++.++
T Consensus 1 tT~vgi~~~dgVVlaaD~r~~~g~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (235)
T 1q5q_H 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKA 80 (235)
T ss_dssp CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEECCCCCcCCEEecCCcCcEEEeCCcEEEEcCCcHHHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Confidence 589999999999999999999 7899899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCccccceeeEEEEEcCCCC-----cEEEEECCCcceeee--eEEeeCCChHHHHHHHHhhccCCCC
Q 026223 111 KWIADKSQVYTQHAYMRPLGVVAMVLSIDEECG-----PRLFKCDPAGHFFGH--KATSAGLKEQEAINFLEKKMKNDPA 183 (241)
Q Consensus 111 ~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~g-----p~Ly~iDp~G~~~~~--~~~aiG~gs~~~~~~Le~~~~~~~~ 183 (241)
++|++++|.|+++. +|||++++||||||++++ |+||.+||+|++.++ +++|+|+|+++++++||+.| +++
T Consensus 81 ~~l~~~~~~~~~~~-~rp~~v~~lvaG~D~~~g~~~~~p~Ly~idp~G~~~~~~~~~~aiGsgs~~a~~~Le~~~--~~~ 157 (235)
T 1q5q_H 81 NRLASMVRGNLGAA-MQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIY--SPD 157 (235)
T ss_dssp HHHHHHHHTTHHHH-TTTCCEEEEEEEECTTCSSTTSCEEEEEECTTSCEEECCSSEEEESTTHHHHHHHHHHHC--CTT
T ss_pred HHHHHHHHHHHHhh-hcccceEEEEEEEECCCCccCCCCEEEEECCCCceEEeCCCeEEECCCHHHHHHHHHhhc--CCC
Confidence 99999999988764 899999999999998557 999999999999999 99999999999999999996 589
Q ss_pred CCHHHHHHHHHHHHHHhhcccCCCCc---E-----EEEEEEcCCCcEEEcCHHHHHHHHHhhhc
Q 026223 184 FTFQETVQTAISTLQSVLQEDFKASE---I-----EVGVVSKENPEFRVLSIEEIDEHLTAISE 239 (241)
Q Consensus 184 ~s~~ea~~la~~~l~~~~~~d~~~~~---i-----ei~ii~~~~~~~k~l~~~ei~~~l~~i~~ 239 (241)
||++||++++++||..+.++|..+++ + +|++|++++ |+.++++||++++.++.+
T Consensus 158 ms~eeA~~la~~al~~a~~~d~~sg~~~~i~~~~~ev~vi~~~g--~~~l~~~ei~~~~~~~~~ 219 (235)
T 1q5q_H 158 SDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAG--AVHVSEETTSELARRIVA 219 (235)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTE--EEECCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhCcccCCcccccccccEEEEEeCCC--eEEeCHHHHHHHHHHHHH
Confidence 99999999999999999999988764 2 999999874 999999999999998874
No 25
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=100.00 E-value=1.6e-46 Score=324.49 Aligned_cols=208 Identities=18% Similarity=0.193 Sum_probs=195.5
Q ss_pred EEccCCceEEEEEcCCEEEEEEeccCC-CCcccCCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCC
Q 026223 26 AVKAAGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEM 104 (241)
Q Consensus 26 a~~~~G~t~igi~~~dgVvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~ 104 (241)
|++ +|+|+|||+++||||||+|+|.+ ++++..++.+|||+|+++++|+++|+.+|++.|.++++.+++.|++++++++
T Consensus 61 Av~-~GtTiVgIk~kdGVVlAaD~r~t~G~li~~~~~~KI~~I~~~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~g~~i 139 (294)
T 1q5r_H 61 LAP-HGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPL 139 (294)
T ss_dssp CSC-BCCCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHh-cCceEEEEEECCEEEEEEcCccccCceeecCCcceEEEECCcEEEEEeecHHHHHHHHHHHHHHHHHhhHhhCCCC
Confidence 566 69999999999999999999999 7899899999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhhccCccccceeeEEEEEcCCCC-----cEEEEECCCcceeee--eEEeeCCChHHHHHHHHhh
Q 026223 105 PVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECG-----PRLFKCDPAGHFFGH--KATSAGLKEQEAINFLEKK 177 (241)
Q Consensus 105 ~~~~la~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~g-----p~Ly~iDp~G~~~~~--~~~aiG~gs~~~~~~Le~~ 177 (241)
+++.++++|++++|.|+++. +|||++++||+|||++++ |+||++||+|++.++ +++|+|+|+++++++||+.
T Consensus 140 sv~~la~~la~~l~~~~~~~-~rp~~v~lLvaG~D~~~g~~~~~p~Ly~iDp~G~~~e~~~~~~AiGsgs~~a~~~Le~~ 218 (294)
T 1q5r_H 140 TFDGKANRLASMVRGNLGAA-MQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKI 218 (294)
T ss_dssp CHHHHHHHHHHHHHHHHHHH-TTTTCEEEEEEEECTTCSCTTSCEEEEEECSSSCEEECCSSEEEESTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhh-cCCcceEEEEEEEeCCCCcCCCCCEEEEECCCCeEEecCCCeEEEecCcHHHHHHHHHh
Confidence 99999999999999998764 899999999999998556 999999999999999 9999999999999999999
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHhhcccCCCCc---E-----EEEEEEcCCCcEEEcCHHHHHHHHHhhhc
Q 026223 178 MKNDPAFTFQETVQTAISTLQSVLQEDFKASE---I-----EVGVVSKENPEFRVLSIEEIDEHLTAISE 239 (241)
Q Consensus 178 ~~~~~~~s~~ea~~la~~~l~~~~~~d~~~~~---i-----ei~ii~~~~~~~k~l~~~ei~~~l~~i~~ 239 (241)
| +++||++||++++++||..+.++|+.+++ + +|++|++++ |++++++||+++++++.+
T Consensus 219 y--~~~ms~eEAi~la~~aL~~a~~rD~~sG~~~~ir~i~~ev~vI~~~g--~~~l~~~ei~~~l~~i~~ 284 (294)
T 1q5r_H 219 Y--SPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAG--AVHVSEETTSELARRIVA 284 (294)
T ss_dssp C--CSSCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTE--EEECCHHHHHHHHHHHCC
T ss_pred c--cCCCCHHHHHHHHHHHHHHHHhhccccCCchhhcccCCEEEEEECCC--EEEcCHHHHHHHHHHHHH
Confidence 6 57999999999999999999999988753 5 999999874 999999999999999874
No 26
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=100.00 E-value=8.4e-47 Score=312.85 Aligned_cols=200 Identities=13% Similarity=0.184 Sum_probs=188.8
Q ss_pred ceEEEEEcCCEEEEEEeccCC-CCcccCCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026223 32 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 110 (241)
Q Consensus 32 ~t~igi~~~dgVvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 110 (241)
+|+|||+++||||||+|+|.+ ++++..++.+||++|+++++|++||+.+|++.|.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (212)
T 1ryp_L 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAAS 80 (212)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCCeEecCcccceeeeCCcEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 589999999999999999999 6898889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcceeeeeEEeeCCChHHHHHHHHhhccCCCCCCHHHHH
Q 026223 111 KWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETV 190 (241)
Q Consensus 111 ~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~~~~aiG~gs~~~~~~Le~~~~~~~~~s~~ea~ 190 (241)
+++++.+|.|+++ ||++++||||||++++|+||.+||+|++.+++++|+|+|+++++++||+.| +++||++||+
T Consensus 81 ~~l~~~~~~~~~~----p~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~--~~~~s~eea~ 154 (212)
T 1ryp_L 81 KILSNLVYQYKGA----GLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNY--KWDLSVEDAL 154 (212)
T ss_dssp HHHHHHHHHTTTS----CCCBEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHHHC--CTTCCHHHHH
T ss_pred HHHHHHHHhhCCC----CceEEEEEEEEeCCCCCEEEEEcCCceeEecCCEEEcCCHHHHHHHHHhhC--CCCCCHHHHH
Confidence 9999999988753 999999999999657999999999999999999999999999999999996 5799999999
Q ss_pred HHHHHHHHHhhcccCCCC-cEEEEEEEcCCCcEEEcCHHHHHHHHHhhhc
Q 026223 191 QTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSIEEIDEHLTAISE 239 (241)
Q Consensus 191 ~la~~~l~~~~~~d~~~~-~iei~ii~~~~~~~k~l~~~ei~~~l~~i~~ 239 (241)
+++++||..+.+||..++ +++|++|++++ +++++++||++++.++.+
T Consensus 155 ~la~~al~~~~~rd~~s~~~i~v~vi~~~g--~~~~~~~ei~~~~~~~~~ 202 (212)
T 1ryp_L 155 YLGKRSILAAAHRDAYSGGSVNLYHVTEDG--WIYHGNHDVGELFWKVKE 202 (212)
T ss_dssp HHHHHHHHHHHHHBTTCCSEEEEEEEETTE--EEEEEEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCCceEEEEEcCCc--eEEECHHHHHHHHHHHHH
Confidence 999999999999997766 79999999874 999999999999887764
No 27
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=100.00 E-value=8.1e-47 Score=325.30 Aligned_cols=205 Identities=13% Similarity=0.193 Sum_probs=190.3
Q ss_pred EEccCCceEEEEEcCCEEEEEEeccCC-CCcccCCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCC
Q 026223 26 AVKAAGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEM 104 (241)
Q Consensus 26 a~~~~G~t~igi~~~dgVvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~ 104 (241)
+++ +|+|+|||+++||||||+|+|++ +.++..++.+||++|+++++|+++|+.+|++.|.++++.+++.|++++++++
T Consensus 71 ~v~-~GtT~vgik~~dGVVlAaD~r~t~G~li~~~~~~KI~~I~d~i~~~~aG~~AD~~~l~~~lr~~~~~y~~~~~~~i 149 (287)
T 3nzj_K 71 KIA-HGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERI 149 (287)
T ss_dssp ------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECEECHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred hec-cCceEEEEEECCEEEEEEccccccCceeecCCcceEEEEcCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 777 69999999999999999999999 7888899999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcceeeeeEEeeCCChHHHHHHHHhhccCCCCC
Q 026223 105 PVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAF 184 (241)
Q Consensus 105 ~~~~la~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~~~~aiG~gs~~~~~~Le~~~~~~~~~ 184 (241)
+++.+++++++++|.|++ +||++++||||||+++||+||++||.|++.++++.|+|+|+++++++||+.| +++|
T Consensus 150 sv~~la~~ls~~l~~~r~----~p~~v~~lvaG~D~~~gp~Ly~iDp~G~~~~~~~~AiGsgs~~a~~~Le~~y--~~dm 223 (287)
T 3nzj_K 150 SVAAASKILSNLVYQYKG----AGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNY--KWDL 223 (287)
T ss_dssp CHHHHHHHHHHHHHHTTT----SCCCEEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHTSC--CTTC
T ss_pred CHHHHHHHHHHHHHhhcC----CCceEEEEEEEEcCCCCCEEEEECCCceEEEcCeEEEecchHHHHHHHHHhh--cCCC
Confidence 999999999999988764 3999999999999668999999999999999999999999999999999996 5799
Q ss_pred CHHHHHHHHHHHHHHhhcccCCCC-cEEEEEEEcCCCcEEEcCHHHHHHHHHhhhc
Q 026223 185 TFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSIEEIDEHLTAISE 239 (241)
Q Consensus 185 s~~ea~~la~~~l~~~~~~d~~~~-~iei~ii~~~~~~~k~l~~~ei~~~l~~i~~ 239 (241)
|++||++++++||..+.+||..++ +++|++|++++ |++++++||++++.++.+
T Consensus 224 s~eEAi~la~~aL~~a~~rD~~sg~~i~V~vItkdg--~~~l~~~ev~~~l~~~~e 277 (287)
T 3nzj_K 224 SVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDG--WIYHGNHDVGELFWKVKE 277 (287)
T ss_dssp CHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTE--EEEEEEEEHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhCcCCCCceEEEEEeCCC--EEEeCHHHHHHHHHHHHH
Confidence 999999999999999999999886 79999999985 999999999999888764
No 28
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=100.00 E-value=2e-46 Score=323.59 Aligned_cols=228 Identities=14% Similarity=0.120 Sum_probs=175.4
Q ss_pred CCCCCCccceecCCCce-----eE------EEEccCCceEEEEEcCCEEEEEEeccCC-CCcccCCCcceeEEecCcEEE
Q 026223 6 GGGYDRHITIFSPEGRL-----FQ------VAVKAAGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGL 73 (241)
Q Consensus 6 ~~~yd~~~t~fsp~G~l-----~Q------~a~~~~G~t~igi~~~dgVvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~ 73 (241)
+++|+..+....||.-. ++ ..++ +|+|+|||+++||||||+|+|++ +.++..++.+|||+|+++++|
T Consensus 22 ~~~f~~~~~~~~~~~l~~~~~~~~~~~~ya~~v~-~GtTiVgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~i~d~i~~ 100 (291)
T 2jay_A 22 LSSFTDFLRRQAPELLPASISGGAPLAGGDAQLP-HGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTAT 100 (291)
T ss_dssp -------------------------------------CCEEEEEETTEEEEEECCC--------CCCCCCEEEEETTEEE
T ss_pred CccHHHHhhhcChhhccccccccCcCcccccccc-CCcEEEEEEECCEEEEEECCCccCCCeeecCCcccEEEeCCcEEE
Confidence 46788888888888533 22 2466 69999999999999999999999 668888899999999999999
Q ss_pred EEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCccccceeeEEEEEcCCCC-----cEEEE
Q 026223 74 LATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECG-----PRLFK 148 (241)
Q Consensus 74 ~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~g-----p~Ly~ 148 (241)
+++|+.+|++.|.++++.+++.|++.++++++++.+++.++++++.|++ ..+|||+|++||||||++++ |+||+
T Consensus 101 ~~aG~~aD~~~l~~~lr~~~~~y~~~~~~~i~v~~la~~la~~l~~~~~-~~~rpf~v~~lvaG~D~~g~~~~~~p~Ly~ 179 (291)
T 2jay_A 101 GIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLA-AAMQGLLALPLLAGYDIHASDPQSAGRIVS 179 (291)
T ss_dssp EEESCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTCHH-HHHHTCCCEEEEEEECTTCSCSTTCEEEEE
T ss_pred EEcccHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhhh-hhccccceeEEEEEEeCCCCcCCCCCEEEE
Confidence 9999999999999999999999999999999999999999999998875 46899999999999997555 89999
Q ss_pred ECCCccee--eeeEEeeCCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhcccCCCCcE--------EEEEEEcC
Q 026223 149 CDPAGHFF--GHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEI--------EVGVVSKE 218 (241)
Q Consensus 149 iDp~G~~~--~~~~~aiG~gs~~~~~~Le~~~~~~~~~s~~ea~~la~~~l~~~~~~d~~~~~i--------ei~ii~~~ 218 (241)
+||+|++. ++++.|+|+|+++++++||+.| +++||++||++++++||..+.++|+.++++ +|++|+++
T Consensus 180 iDp~G~~~e~~~~~~aiGsgs~~a~~~Le~~~--~~~ms~eEAi~la~~aL~~a~~~D~~sg~~e~vr~~~~~v~vi~~d 257 (291)
T 2jay_A 180 FDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLY--SQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDAD 257 (291)
T ss_dssp ECTTSCEEECSSSEEEESTTHHHHHHHHHHHG--GGCCSHHHHHHHHHHHHHHC----------------CCEEEEEETT
T ss_pred ECCCCcEEecCCCEEEEecCHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHhhCCCCCCcccccccCCEEEEEECC
Confidence 99999998 8899999999999999999997 578999999999999999999999988876 59999998
Q ss_pred CCcEEEcCHHHHHHHHHhhhc
Q 026223 219 NPEFRVLSIEEIDEHLTAISE 239 (241)
Q Consensus 219 ~~~~k~l~~~ei~~~l~~i~~ 239 (241)
+ |++++++||++++.++.+
T Consensus 258 g--~~~l~~~ei~~~~~~~~~ 276 (291)
T 2jay_A 258 G--AVDVPESRIAELARAIIE 276 (291)
T ss_dssp E--EEECCHHHHHHHHHHC--
T ss_pred C--eEEcCHHHHHHHHHHHHH
Confidence 4 999999999999998874
No 29
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=100.00 E-value=4.4e-47 Score=313.01 Aligned_cols=199 Identities=15% Similarity=0.194 Sum_probs=187.1
Q ss_pred ceEEEEEcCCEEEEEEeccCC-CCcccCCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026223 32 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 110 (241)
Q Consensus 32 ~t~igi~~~dgVvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 110 (241)
+|+|||+++||||||+|+|.+ +.++..++.+||++|+++++|+++|+.+|++.|.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (205)
T 1iru_H 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAA 80 (205)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEecCCcCceEEcCCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 589999999999999999999 5588888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcceeeeeEEeeCCChHHHHHHHHhhccCCCCCCHHHHH
Q 026223 111 KWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETV 190 (241)
Q Consensus 111 ~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~~~~aiG~gs~~~~~~Le~~~~~~~~~s~~ea~ 190 (241)
+++++.+|.|++ ||++++||+|||+++||+||.+||.|++.+++++++|+|+++++++||+.| +++||++||+
T Consensus 81 ~~l~~~~~~~~~-----p~~~~~lvaG~D~~~gp~ly~~d~~G~~~~~~~~a~Gsgs~~a~~~Le~~~--~~~~s~eea~ 153 (205)
T 1iru_H 81 SLFKEMCYRYRE-----DLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATY--REGMTKEECL 153 (205)
T ss_dssp HHHHHHHHHTTT-----TCCEEEEEEEEETTTEEEEEEECTTSCCEECSEEEESGGGGGGHHHHHHHC--CTTCCHHHHH
T ss_pred HHHHHHHHhcCc-----CccEEEEEEEEeCCCCCEEEEECCCCcEEecCEEEECCCHHHHHHHHHHhc--CCCCCHHHHH
Confidence 999999998764 999999999999767899999999999999999999999999999999996 5799999999
Q ss_pred HHHHHHHHHhhcccCCCC-cEEEEEEEcCCCcEEEcCHHHHHHHHHhh
Q 026223 191 QTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSIEEIDEHLTAI 237 (241)
Q Consensus 191 ~la~~~l~~~~~~d~~~~-~iei~ii~~~~~~~k~l~~~ei~~~l~~i 237 (241)
+++++||..+.++|..++ +++|++|++++..++.++++||++++++.
T Consensus 154 ~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~l~~~ei~~~~~~~ 201 (205)
T 1iru_H 154 QFTANALALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIPKFAVAT 201 (205)
T ss_dssp HHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEECGGGSCCCCCCC
T ss_pred HHHHHHHHHHHHhccccCCcEEEEEEeCCCeEEEEeChHHhhHHHhhc
Confidence 999999999999997765 79999999998678999999998887653
No 30
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=100.00 E-value=1.3e-47 Score=319.27 Aligned_cols=204 Identities=14% Similarity=0.188 Sum_probs=189.2
Q ss_pred EEccCCceEEEEEcCCEEEEEEeccCC-CCcccCCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHH-HhCCC
Q 026223 26 AVKAAGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRF-KYGYE 103 (241)
Q Consensus 26 a~~~~G~t~igi~~~dgVvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~-~~~~~ 103 (241)
|++ +|+|+|||+++||||||+|+|.+ +.++.+++.+||++|+++++|+++|+.+|++.|.++++.+++.|++ +++++
T Consensus 4 av~-~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 82 (219)
T 1iru_N 4 PMV-TGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHS 82 (219)
T ss_dssp CCS-EECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSCC
T ss_pred Ccc-CCceEEEEEeCCEEEEEECCccccCcEEecCCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 466 59999999999999999999999 7888889999999999999999999999999999999999999998 99999
Q ss_pred CCHHHHHHHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcceeeeeEEeeCCChHHHHHHHHhhccCCCC
Q 026223 104 MPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPA 183 (241)
Q Consensus 104 ~~~~~la~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~~~~aiG~gs~~~~~~Le~~~~~~~~ 183 (241)
++++.+++++++.+ |++++++|||++++||+|||+ ++|+||.+||.|++.+++++|+|+|+++++++||+.|+..++
T Consensus 83 ~~v~~la~~l~~~l--y~~r~~~~P~~v~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~ 159 (219)
T 1iru_N 83 YSPRAIHSWLTRAM--YSRRSKMNPLWNTMVIGGYAD-GESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPV 159 (219)
T ss_dssp CCHHHHHHHHHHHH--HHHHHTTCCCCEEEEEEEEET-TEEEEEEECSSCCEEECSEEECTTHHHHTHHHHHHHHTSCSC
T ss_pred CCHHHHHHHHHHHH--HHhcccCCCceEEEEEEEEEC-CCCEEEEECCCCCeEECCeEEECccHHHHHHHHHhhcCCCCC
Confidence 99999999999998 556667899999999999997 699999999999999999999999999999999999843339
Q ss_pred CCHHHHHHHHHHHHHHhhcccCCCC-cEEEEEEEcCCCcEEEcCHHHHHHHHH
Q 026223 184 FTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSIEEIDEHLT 235 (241)
Q Consensus 184 ~s~~ea~~la~~~l~~~~~~d~~~~-~iei~ii~~~~~~~k~l~~~ei~~~l~ 235 (241)
||++||++++++||..+.++|..++ +++|++|++++ ++.++++||+..|.
T Consensus 160 mt~eea~~l~~~al~~~~~~d~~sg~~i~v~vi~~~g--~~~~~~~~i~~~~~ 210 (219)
T 1iru_N 160 LSQTEARDLVERCMRVLYYRDARSYNRFQTATVTEKG--VEIEGPLSTETNWD 210 (219)
T ss_dssp CCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTE--EEEEEEECCCCCCG
T ss_pred CCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEcCCC--EEEcCCeeccchhh
Confidence 9999999999999999999998776 79999999985 99999998877653
No 31
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=100.00 E-value=2e-46 Score=308.86 Aligned_cols=199 Identities=15% Similarity=0.206 Sum_probs=187.8
Q ss_pred ceEEEEEcCCEEEEEEeccCC-CCcccCCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026223 32 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 110 (241)
Q Consensus 32 ~t~igi~~~dgVvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 110 (241)
+|+|||+++||||||+|+|.+ ++++..++.+||++|++++++++||+.+|++.|.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (204)
T 1iru_L 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAAS 80 (204)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCCEEEcCcccceEEcCCCEEEEccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 589999999999999999999 6888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcceeeeeEEeeCCChHHHHHHHHhhccCCCCCCHHHHH
Q 026223 111 KWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETV 190 (241)
Q Consensus 111 ~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~~~~aiG~gs~~~~~~Le~~~~~~~~~s~~ea~ 190 (241)
+++++.+|.|++ +||++++||||||+ +||+||.+||+|++.+++++|+|+|+++++++||+.| +++||++||+
T Consensus 81 ~~l~~~~~~~r~----~~~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~--~~~~s~eea~ 153 (204)
T 1iru_L 81 KLLANMVYQYKG----MGLSMGTMICGWDK-RGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGY--SYDLEVEQAY 153 (204)
T ss_dssp HHHHHHHHTTTT----SCCCBEEEEEEECS-SSEEEEEEESSSCEEECSEEEESTTHHHHHHHHHTTC--CTTCCHHHHH
T ss_pred HHHHHHHHHhCC----CCeeEEEEEEEEeC-CCCEEEEECCCCcEEEeCCEEEEcCHHHHHHHHhccC--CCCCCHHHHH
Confidence 999999987753 49999999999997 7999999999999999999999999999999999996 5799999999
Q ss_pred HHHHHHHHHhhcccCCCC-cEEEEEEEcCCCcEEEcCHHHHHHHHHhhhc
Q 026223 191 QTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSIEEIDEHLTAISE 239 (241)
Q Consensus 191 ~la~~~l~~~~~~d~~~~-~iei~ii~~~~~~~k~l~~~ei~~~l~~i~~ 239 (241)
+++++||..+.+||..++ +++|++|++++ |+.++++||++++.++.+
T Consensus 154 ~l~~~al~~~~~rd~~s~~~i~v~vi~~~g--~~~l~~~ei~~~~~~~~~ 201 (204)
T 1iru_L 154 DLARRAIYQATYRDAYSGGAVNLYHVREDG--WIRVSSDNVADLHEKYSG 201 (204)
T ss_dssp HHHHHHHHHHHHHBTTCCSEEEEEEECSSC--EEEEEEEEHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCccCCCceEEEEEeCCc--eEEeCHHHHHHHHHHhcc
Confidence 999999999999997665 79999999874 999999999999999874
No 32
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=100.00 E-value=2.6e-47 Score=320.22 Aligned_cols=205 Identities=14% Similarity=0.220 Sum_probs=189.7
Q ss_pred EEccCCceEEEEEcCCEEEEEEeccCC-CCcccCCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHH-----H
Q 026223 26 AVKAAGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRF-----K 99 (241)
Q Consensus 26 a~~~~G~t~igi~~~dgVvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~-----~ 99 (241)
|++ +|+|+|||+++||||||+|+|.+ +.++.+++.+||++|+++++|+++|+.+|++.|.++++.+++.|++ +
T Consensus 4 av~-~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 82 (233)
T 1ryp_N 4 PIV-TGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLAD 82 (233)
T ss_dssp CCE-EECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTTT
T ss_pred ccc-CCceEEEEEECCEEEEEEcCccccCCeeecCCcCceEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHhhccchhh
Confidence 466 59999999999999999999999 7888888999999999999999999999999999999999999999 8
Q ss_pred hCCCCCHHHHHHHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcceeeeeEEeeCCChHHHHHHHHhhcc
Q 026223 100 YGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMK 179 (241)
Q Consensus 100 ~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~~~~aiG~gs~~~~~~Le~~~~ 179 (241)
++++++++.+++++++.+ |++++++|||++++||+|||++++|+||.+||.|++.++++.|+|+|+++++++||+.|+
T Consensus 83 ~~~~~~v~~la~~l~~~l--y~~r~~~~P~~v~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~ 160 (233)
T 1ryp_N 83 AEEALEPSYIFEYLATVM--YQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVD 160 (233)
T ss_dssp TTTSCCHHHHHHHHHHHH--HHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHHHHHHHTTTCS
T ss_pred cCCCCCHHHHHHHHHHHH--HHhcCCCCCceEEEEEEEEcCCCCEEEEEECCCcCeEEcCEEEECcCHHHHHHHHHHhhc
Confidence 999999999999999998 566777899999999999997569999999999999999999999999999999999974
Q ss_pred CCC---CCCHHHHHHHHHHHHHHhhcccCCCC-cEEEEEEEcCCCcEEEcCHHHHHHH-H
Q 026223 180 NDP---AFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSIEEIDEH-L 234 (241)
Q Consensus 180 ~~~---~~s~~ea~~la~~~l~~~~~~d~~~~-~iei~ii~~~~~~~k~l~~~ei~~~-l 234 (241)
..+ +||++||++++++||..+.++|+.++ +++|++|+++++ ++.++++||+++ |
T Consensus 161 ~~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~g-~~~~~~~~i~~~~w 219 (233)
T 1ryp_N 161 RESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTG-LTFKKNLQVENMKW 219 (233)
T ss_dssp SGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTE-EEEEEEEECCSCCC
T ss_pred cccccCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEECCCC-eEEcChHhcccccc
Confidence 211 89999999999999999999998876 799999999842 999999998887 6
No 33
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=100.00 E-value=3.5e-45 Score=303.28 Aligned_cols=189 Identities=15% Similarity=0.262 Sum_probs=175.2
Q ss_pred EccCCceEEEEEcCCEEEEEEeccCC-CCcccCCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 026223 27 VKAAGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMP 105 (241)
Q Consensus 27 ~~~~G~t~igi~~~dgVvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 105 (241)
++ +|+|+|||+++||||||+|+|.+ +.++..++.+||++|+++++|++||+.+|++.|.++++.+++.|+++++++++
T Consensus 6 v~-~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 84 (213)
T 1iru_M 6 VF-NGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMT 84 (213)
T ss_dssp CC-CCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred cC-CCCcEEEEEeCCEEEEEECCCcccCCEEecCCCCcEEEcCCCEEEEccccHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 45 69999999999999999999999 55565678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcceeeeeEEeeCCChHHHHHHHHhhcc------
Q 026223 106 VDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMK------ 179 (241)
Q Consensus 106 ~~~la~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~~~~aiG~gs~~~~~~Le~~~~------ 179 (241)
++.++++|++.+ |+++ .|||++++||+|||++++|+||.+||.|++.+++++|+|+|+++++++||+.++
T Consensus 85 v~~la~~l~~~~--y~~r--~~P~~v~~lvaG~D~~g~p~Ly~id~~G~~~~~~~~aiGsg~~~a~~~Le~~~~~~~~~~ 160 (213)
T 1iru_M 85 TGAIAAMLSTIL--YSRR--FFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQN 160 (213)
T ss_dssp HHHHHHHHHHHH--HHTT--TSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTTCCSCSS
T ss_pred HHHHHHHHHHHH--HhhC--CCCceEEEEEEEEcCCCCEEEEEECCCCCEEECCEEEEeeCHHHHHHHHhhccccccccc
Confidence 999999999998 6654 789999999999997566999999999999999999999999999999999954
Q ss_pred -CCCCCCHHHHHHHHHHHHHHhhcccCCCC-cEEEEEEEcCCC
Q 026223 180 -NDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENP 220 (241)
Q Consensus 180 -~~~~~s~~ea~~la~~~l~~~~~~d~~~~-~iei~ii~~~~~ 220 (241)
|+++||++||++++++||..+.++|..++ +++|++|++++.
T Consensus 161 ~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~ 203 (213)
T 1iru_M 161 VEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGI 203 (213)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHHBTTSCSEEEEEEEETTEE
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHhCCccCCcEEEEEEcCCCe
Confidence 45899999999999999999999998766 799999999874
No 34
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=100.00 E-value=1.2e-44 Score=301.98 Aligned_cols=191 Identities=17% Similarity=0.306 Sum_probs=176.2
Q ss_pred EEccCCceEEEEEcCCEEEEEEeccCC-CCcccCCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhC-CC
Q 026223 26 AVKAAGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYG-YE 103 (241)
Q Consensus 26 a~~~~G~t~igi~~~dgVvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~-~~ 103 (241)
+++ +|+|+|||+++||||||+|+|.+ +.++..++.+||++|+++++|+++|+.+|++.|.++++.+++.|+++++ ++
T Consensus 5 ~v~-~Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 83 (222)
T 1ryp_M 5 YGD-NGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHNDKK 83 (222)
T ss_dssp CCC-CCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred ccc-CCccEEEEEeCCEEEEEEecccccCCEecCCCcCcEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 355 69999999999999999999999 5556778999999999999999999999999999999999999999999 99
Q ss_pred CCHHHHHHHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcceeeeeEEeeCCChHHHHHHHHhhcc----
Q 026223 104 MPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMK---- 179 (241)
Q Consensus 104 ~~~~~la~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~~~~aiG~gs~~~~~~Le~~~~---- 179 (241)
++++.+++++++.+ |++ +.|||++++||+|||++++|+||.+||.|++.+++++|+|+|+.+++++||+.++
T Consensus 84 ~~v~~la~~l~~~l--y~~--r~~P~~v~~ivaG~D~~g~p~Ly~~dp~G~~~~~~~~a~Gsg~~~a~~~Le~~~~~~~~ 159 (222)
T 1ryp_M 84 LSINSAARNIQHLL--YGK--RFFPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQ 159 (222)
T ss_dssp CCHHHHHHHHHHHH--HTT--TTSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTSCTTC
T ss_pred CCHHHHHHHHHHHH--Hhc--CCCCceEEEEEEEEcCCCCeEEEEECCCcCEEecCEEEEcCcHHHHHHHHhcccccccc
Confidence 99999999999998 543 3679999999999997567999999999999999999999999999999999854
Q ss_pred -----------CCCCCCHHHHHHHHHHHHHHhhcccCCCC-cEEEEEEEcCCCc
Q 026223 180 -----------NDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPE 221 (241)
Q Consensus 180 -----------~~~~~s~~ea~~la~~~l~~~~~~d~~~~-~iei~ii~~~~~~ 221 (241)
|+++||+|||++++++||..+.++|+.++ +++|++|++++..
T Consensus 160 ~~~~~~~~~~~~~~~~s~eeA~~la~~al~~a~~rd~~sg~~i~v~vi~~~g~~ 213 (222)
T 1ryp_M 160 YEPGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTKDGVR 213 (222)
T ss_dssp BCTTSTTCSBCCCCCCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEE
T ss_pred cccccccccccCCCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEcCCCeE
Confidence 57899999999999999999999998776 7999999998743
No 35
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=100.00 E-value=2.9e-46 Score=319.54 Aligned_cols=206 Identities=14% Similarity=0.219 Sum_probs=190.3
Q ss_pred EEccCCceEEEEEcCCEEEEEEeccCC-CCcccCCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHH-----H
Q 026223 26 AVKAAGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRF-----K 99 (241)
Q Consensus 26 a~~~~G~t~igi~~~dgVvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~-----~ 99 (241)
+++ +|+|+|||+++||||||+|+|.+ +.++..++.+||++|+++++|+++|+.+|++.|.+++|.+++.|++ +
T Consensus 37 av~-~GtT~vgi~~~dgVVlAaD~r~t~g~~i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~~~ 115 (266)
T 1g0u_M 37 PIV-TGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLAD 115 (266)
T ss_dssp CCE-EECCEEEEEETTEEEEEEECCEEETTEEEECCCCCEEECTTSEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTTT
T ss_pred Ccc-cCceEEEEEECCEEEEEEcCCcccCceeecCCcCcEEEcCCCEEEEeccCHHHHHHHHHHHHHHHHHhhhccchhh
Confidence 777 59999999999999999999999 7888888999999999999999999999999999999999999998 8
Q ss_pred hCCCCCHHHHHHHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcceeeeeEEeeCCChHHHHHHHHhhcc
Q 026223 100 YGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMK 179 (241)
Q Consensus 100 ~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~~~~aiG~gs~~~~~~Le~~~~ 179 (241)
++++++++.+++++++++ |+++.++|||++++||+|||++++|+||.+||.|++.+++++|+|+|+++++++||+.|+
T Consensus 116 ~~~~~~v~~la~~l~~~l--y~~r~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~ 193 (266)
T 1g0u_M 116 AEEALEPSYIFEYLATVM--YQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVD 193 (266)
T ss_dssp TTTSCCHHHHHHHHHHHH--HHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHTHHHHHTTTCS
T ss_pred cCCCCCHHHHHHHHHHHH--HHhccCCCCceEEEEEEEEcCCCCEEEEEECCCCCEEeCCEEEEccCHHHHHHHHHHhhc
Confidence 999999999999999998 566777899999999999997569999999999999999999999999999999999974
Q ss_pred CCC---CCCHHHHHHHHHHHHHHhhcccCCCC-cEEEEEEEcCCCcEEEcCHHHHHHH-HH
Q 026223 180 NDP---AFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSIEEIDEH-LT 235 (241)
Q Consensus 180 ~~~---~~s~~ea~~la~~~l~~~~~~d~~~~-~iei~ii~~~~~~~k~l~~~ei~~~-l~ 235 (241)
..+ +||++||++++++||..+.+||+.++ +++|++|+++++ ++.++++||+++ |.
T Consensus 194 ~~~~~~~ms~eeA~~la~~al~~a~~rd~~sg~~i~v~vI~k~~g-~~~~~~~ei~~~~w~ 253 (266)
T 1g0u_M 194 RESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTG-LTFKKNLQVENMKWD 253 (266)
T ss_dssp SGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTE-EEEEEEEECCCCCCG
T ss_pred ccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEECCCC-eEEcCHHHhhhhhhh
Confidence 211 89999999999999999999998776 799999999842 999999998877 53
No 36
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=100.00 E-value=1.3e-44 Score=296.55 Aligned_cols=190 Identities=16% Similarity=0.196 Sum_probs=176.0
Q ss_pred ceEEEEEcCCEEEEEEeccCC-CCcccCCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026223 32 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 110 (241)
Q Consensus 32 ~t~igi~~~dgVvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 110 (241)
+|+|||+++||||||+|+|.+ +.++..++.+||++|+++++++++|+.+|++.|.++++.+++.|+++++++++++.++
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 81 (198)
T 1ryp_K 2 DIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAVS 81 (198)
T ss_dssp CCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred ceEEEEEECCEEEEEECCCcccCCEEEecCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 689999999999999999998 5565567899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCccccceeeEEEEEcC-CCCcEEEEECCCcceeeeeEEeeCCChHHHHHHHHhhccCCCCCCHHHH
Q 026223 111 KWIADKSQVYTQHAYMRPLGVVAMVLSIDE-ECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQET 189 (241)
Q Consensus 111 ~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~-~~gp~Ly~iDp~G~~~~~~~~aiG~gs~~~~~~Le~~~~~~~~~s~~ea 189 (241)
+++++.++.|++. ++||++++||+|||+ +++|+||.+||+|++.+++++|+|+|+++++++||+.| +++||++||
T Consensus 82 ~~l~~~l~~~~~~--r~p~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~--~~~~s~eea 157 (198)
T 1ryp_K 82 SFVRQELAKSIRS--RRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHY--RPDMTTEEG 157 (198)
T ss_dssp HHHHHHHHHHTTS--SSCCCEEEEEEEEETTTTEEEEEEECTTCCEEECSEEECTTHHHHHHHHHHHHC--CTTCCHHHH
T ss_pred HHHHHHHHHhccc--CCCceEEEEEEEEeCCCCCcEEEEECCCCCEEECCEEEEcccHHHHHHHHHhhc--CCCCCHHHH
Confidence 9999999887632 349999999999996 47999999999999999999999999999999999996 579999999
Q ss_pred HHHHHHHHHHhhcccCCCC-cEEEEEEEcCCCcEEEcCH
Q 026223 190 VQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSI 227 (241)
Q Consensus 190 ~~la~~~l~~~~~~d~~~~-~iei~ii~~~~~~~k~l~~ 227 (241)
++++++||..+.++|..++ +++|++|++++ ++.+++
T Consensus 158 ~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g--~~~~~~ 194 (198)
T 1ryp_K 158 LDLLKLCVQELEKRMPMDFKGVIVKIVDKDG--IRQVDD 194 (198)
T ss_dssp HHHHHHHHHHHHHHCSBCCCCEEEEEEETTE--EEEECC
T ss_pred HHHHHHHHHHHHHhCccCCCceEEEEEcCCC--EEEecc
Confidence 9999999999999997765 79999999984 888765
No 37
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=100.00 E-value=8.1e-45 Score=299.47 Aligned_cols=191 Identities=15% Similarity=0.189 Sum_probs=177.0
Q ss_pred EEccCCceEEEEEcCCEEEEEEeccCC-CCcccCCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCC
Q 026223 26 AVKAAGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEM 104 (241)
Q Consensus 26 a~~~~G~t~igi~~~dgVvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~ 104 (241)
|++ +|+|+|||+++||||||+|+|.+ +.++..++.+||++|+++++|+++|+.+|++.+.++++.+++.|++++++ +
T Consensus 5 av~-~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~-~ 82 (205)
T 1ryp_H 5 EVS-LGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGT-P 82 (205)
T ss_dssp CCB-CCCCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS-C
T ss_pred CCc-CCceEEEEEeCCEEEEEEcCCcccCcEEEcCCcCceEEcCCCEEEEccCCHHHHHHHHHHHHHHHHHHHHHhCC-C
Confidence 466 69999999999999999999999 55888889999999999999999999999999999999999999999999 9
Q ss_pred CHHHHHHHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcceeeeeEEeeCCChHHHHHHHHhhccCCCCC
Q 026223 105 PVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAF 184 (241)
Q Consensus 105 ~~~~la~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~~~~aiG~gs~~~~~~Le~~~~~~~~~ 184 (241)
+++.+++++++.+|.|+++ |++++||+|||++++|+||.+||.|++.+++++|+|+|+++++++||+.| +++|
T Consensus 83 ~v~~la~~l~~~~~~~~~~-----~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~--~~~~ 155 (205)
T 1ryp_H 83 STETAASVFKELCYENKDN-----LTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNF--RENM 155 (205)
T ss_dssp CHHHHHHHHHHHHHHTTTT-----CCEEEEEEEEETTTEEEEEEECTTSCCEEESEEEESGGGGGGHHHHHHHC--CTTC
T ss_pred CHHHHHHHHHHHHHhhhcC-----ceEEEEEEEEecCCCcEEEEECCCccEEecCEEEEEecHHHHHHHHHhcc--CCCC
Confidence 9999999999999988652 99999999999767899999999999999999999999999999999996 5799
Q ss_pred CHHHHHHHHHHHHHHhhcccCCCC-cEEEEEEEcCCCcEEEc
Q 026223 185 TFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVL 225 (241)
Q Consensus 185 s~~ea~~la~~~l~~~~~~d~~~~-~iei~ii~~~~~~~k~l 225 (241)
|++||++++++||..+.++|..++ +++|++|++++...+.+
T Consensus 156 s~eea~~l~~~al~~a~~~d~~sg~~i~v~vi~~~g~~~~~~ 197 (205)
T 1ryp_H 156 SKEETVDFIKHSLSQAIKWDGSSGGVIRMVVLTAAGVERLIF 197 (205)
T ss_dssp CHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHhCCccCCeEEEEEEcCCCEEEEEe
Confidence 999999999999999999998766 79999999987533344
No 38
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=100.00 E-value=2.3e-45 Score=301.32 Aligned_cols=195 Identities=16% Similarity=0.190 Sum_probs=180.9
Q ss_pred ceEEEEEcCCEEEEEEeccCC-CCcccCCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026223 32 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 110 (241)
Q Consensus 32 ~t~igi~~~dgVvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 110 (241)
||+|||+++||||||+|+|.+ +.++..++.+||++|+++++|+++|+.+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (199)
T 3unf_N 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAA 80 (199)
T ss_dssp CEEEEEECSSCEEEEECCCEEETTEEEESSCCCEEEEETTEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred CeEEEEEeCCeEEEEECCcccCCceeEccccCceEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 689999999999999999999 6688889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcceeee-eEEeeCCChHHHHHHHHhhccCCCCCCHHHH
Q 026223 111 KWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGH-KATSAGLKEQEAINFLEKKMKNDPAFTFQET 189 (241)
Q Consensus 111 ~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~-~~~aiG~gs~~~~~~Le~~~~~~~~~s~~ea 189 (241)
+++++.++.| +|||++++||||||++++|+||. |+|++.++ +++++|+|+++++++||+.| +++||++||
T Consensus 81 ~~l~~~l~~~-----~~p~~v~~lvaG~D~~~~p~ly~--p~G~~~~~~~~~~~Gsgs~~a~~~Le~~~--~~~ms~eea 151 (199)
T 3unf_N 81 NVVKNISYKY-----REDLLAHLIVAGWDQREGGQVYG--TMGGMLIRQPFTIGGSGSSYIYGYVDAAY--KPGMTPEEC 151 (199)
T ss_dssp HHHHHHHHHT-----TTTCCCCEEEEEEETTTEEEEEE--CGGGCCEECSEEEEEGGGGGGHHHHHHHC--CSSCCHHHH
T ss_pred HHHHHHHHhc-----CCCceEEEEEEEEeCCCCcEEEE--ECCCceecCCEEEEccCHHHHHHHHHhhc--CCCCCHHHH
Confidence 9999999754 45999999999999867899999 99997666 66678999999999999996 589999999
Q ss_pred HHHHHHHHHHhhcccCCCC-cEEEEEEEcCCCcEEEcCHHHHHHHHH
Q 026223 190 VQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSIEEIDEHLT 235 (241)
Q Consensus 190 ~~la~~~l~~~~~~d~~~~-~iei~ii~~~~~~~k~l~~~ei~~~l~ 235 (241)
++++++||..+.++|..++ +++|++|++++..++.++++||+++|+
T Consensus 152 ~~la~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~l~~~ei~~~~~ 198 (199)
T 3unf_N 152 RRFTTNAITLAMNRDGSSGGVIYLVTITAAGVDHRVILGDELPKFYD 198 (199)
T ss_dssp HHHHHHHHHHHHHHCTTCCSCEEEEEECSSCEEEEEECGGGSCCCCC
T ss_pred HHHHHHHHHHHHHhccccCCCeEEEEEcCCCEEEEEcCcccCccccc
Confidence 9999999999999998876 799999999987799999999987653
No 39
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=100.00 E-value=1.5e-44 Score=303.26 Aligned_cols=192 Identities=17% Similarity=0.273 Sum_probs=178.5
Q ss_pred ceEEEEEcCCEEEEEEeccCC-CCcccCCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026223 32 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 110 (241)
Q Consensus 32 ~t~igi~~~dgVvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 110 (241)
||+|||+++||||||+|+|.+ +.++..++.+|||+|+++++|++||+.+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 TT~vgi~~kdgVVlaaD~r~t~g~~v~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 3unf_H 1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVT 80 (234)
T ss_dssp CEEEEEECSSEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEECCCcccCCEeccCccccEEEecCCEEEEecccHHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Confidence 689999999999999999999 5556678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcceeeeeEEeeCCChHHHHHHHHhhccCCCCCCHHHHH
Q 026223 111 KWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETV 190 (241)
Q Consensus 111 ~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~~~~aiG~gs~~~~~~Le~~~~~~~~~s~~ea~ 190 (241)
+++++.++.| .+||++++||||||+ +||+||++||+|++.++++.|+|+|+++++++||+.| +++||++||+
T Consensus 81 ~~l~~~l~~~-----~~p~~v~llvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~--~~~ms~eeA~ 152 (234)
T 3unf_H 81 RILRQTLFRY-----QGHVGASLVVGGVDL-NGPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRF--QPNMTLEAAQ 152 (234)
T ss_dssp HHHHHHHHHT-----TTCSCEEEEEEEEET-TEEEEEEECTTSCEEECSEEEEETTHHHHHHHHHHHC--CSSCCHHHHH
T ss_pred HHHHHHHHhc-----CCCccEEEEEEEEeC-CCCEEEEECCCCCEEeccEEEEcCCchhhHHHHHhcc--CCCCCHHHHH
Confidence 9999999754 359999999999997 7999999999999999999999999999999999996 6799999999
Q ss_pred HHHHHHHHHhhcccCCCC-cEEEEEEEcCCCcEEEcCHHHHHHH
Q 026223 191 QTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSIEEIDEH 233 (241)
Q Consensus 191 ~la~~~l~~~~~~d~~~~-~iei~ii~~~~~~~k~l~~~ei~~~ 233 (241)
+++++||..+..+|..++ +++|++|++++ ++.+++.+++.-
T Consensus 153 ~la~~al~~~~~~D~~sg~~iev~vi~~dg--~~~l~~~~i~~~ 194 (234)
T 3unf_H 153 ELLVEAITAGILSDLGSGGNVDACVITAGG--AKLQRALSTPTE 194 (234)
T ss_dssp HHHHHHHHHHHHHBTTCCSCEEEEEEESSC--EEEEEEEECCCC
T ss_pred HHHHHHHHHHHhhcCCCCCcEEEEEEECCC--EEEeCceecccc
Confidence 999999999999998776 79999999985 999888776543
No 40
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=100.00 E-value=5.9e-44 Score=303.88 Aligned_cols=191 Identities=18% Similarity=0.225 Sum_probs=174.4
Q ss_pred EEccCCceEEEEEcCCEEEEEEeccCC-CCcccCCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCC
Q 026223 26 AVKAAGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEM 104 (241)
Q Consensus 26 a~~~~G~t~igi~~~dgVvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~ 104 (241)
|++ +|+|+|||+++||||||+|+|.+ +.++..++.+||++|+++++|++||+.+|++.+.++++.+++.|++++++++
T Consensus 25 av~-~GtTivgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~~~ 103 (261)
T 3nzj_H 25 ATS-TGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREP 103 (261)
T ss_dssp ------CCEEEEEETTEEEEEEECCEEETTEEEETTCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred ccc-cCceEEEEEECCEEEEEEcCCcccCCeeccCCcceEEEEcCCEEEEeccCHHHHHHHHHHHHHHHHHhHHhhCCCC
Confidence 888 69999999999999999999999 7888889999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcceeeeeEEeeCCChHHHHHHHHhhccCCCCC
Q 026223 105 PVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAF 184 (241)
Q Consensus 105 ~~~~la~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~~~~aiG~gs~~~~~~Le~~~~~~~~~ 184 (241)
+++.+++++++.++.| .+||++++||||||+ +||+||++||.|++.+++++|+|+|+++++++||+.| +++|
T Consensus 104 ~v~~~a~~l~~~l~~~-----~~~~gv~llvaG~D~-~Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~--~~~m 175 (261)
T 3nzj_H 104 RVVSALQMLKQHLFKY-----QGHIGAYLIVAGVDP-TGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHW--KQDL 175 (261)
T ss_dssp CHHHHHHHHHHHHHHT-----TTCSCEEEEEEEEET-TEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHC--CSSC
T ss_pred CHHHHHHHHHHHHHHh-----cCcccEEEEEEEEeC-CCCEEEEECCCccEEecCeEEeccchHHHHHHHHHHh--ccCC
Confidence 9999999999988544 369999999999997 7899999999999999999999999999999999996 6899
Q ss_pred CHHHHHHHHHHHHHHhhcccCCCC-cEEEEEEEcCCCcEEEcC
Q 026223 185 TFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLS 226 (241)
Q Consensus 185 s~~ea~~la~~~l~~~~~~d~~~~-~iei~ii~~~~~~~k~l~ 226 (241)
|+|||++++++||..+.++|..++ +++|++|+++++ ++.+.
T Consensus 176 s~eEA~~la~~al~~a~~rD~~sg~~iev~vI~kdg~-~~~~~ 217 (261)
T 3nzj_H 176 TKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKD-AEYLR 217 (261)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEEETTSC-EEEEE
T ss_pred CHHHHHHHHHHHHHHHHhhCCCCCCcEEEEEEECCCc-EEEec
Confidence 999999999999999999998776 799999999974 55443
No 41
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=100.00 E-value=8.9e-44 Score=293.22 Aligned_cols=191 Identities=17% Similarity=0.286 Sum_probs=174.2
Q ss_pred CCceEEEEEcCCEEEEEEeccCC-CCcccCCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Q 026223 30 AGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDV 108 (241)
Q Consensus 30 ~G~t~igi~~~dgVvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 108 (241)
+|+|+|||+++||||||+|+|.+ +.++..++.+||++|+++++|+++|+.+|++.|.++++.+++.|+++++++++++.
T Consensus 7 ~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~ 86 (205)
T 1iru_J 7 NGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYT 86 (205)
T ss_dssp SCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSSCCCHHH
T ss_pred CCCeEEEEEeCCEEEEEECCccccCCeEeecCCccEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHhhcCCCCCHHH
Confidence 69999999999999999999999 44444568999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccCccccceeeEEEEEcC-CCCcEEEEECCCcceeee-eEEeeCCChHHHHHHHHhhccCCCCCCH
Q 026223 109 LAKWIADKSQVYTQHAYMRPLGVVAMVLSIDE-ECGPRLFKCDPAGHFFGH-KATSAGLKEQEAINFLEKKMKNDPAFTF 186 (241)
Q Consensus 109 la~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~-~~gp~Ly~iDp~G~~~~~-~~~aiG~gs~~~~~~Le~~~~~~~~~s~ 186 (241)
+++++++.+ |+++. .||++++||+|||+ +++|+||.+||.|++.++ +++|+|+|+++++++||+.| +++||+
T Consensus 87 la~~l~~~~--y~~r~--~P~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~--~~~~s~ 160 (205)
T 1iru_J 87 LMSMVANLL--YEKRF--GPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLW--EPNMDP 160 (205)
T ss_dssp HHHHHHHHH--HTTTT--SCCSCCCEEEEECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHC--CSSCCH
T ss_pred HHHHHHHHH--HHhcC--CCceEEEEEEEEeCCCCCeEEEEECCCCCccccCCeeEeeeCHHHHHHHHhccc--CCCCCH
Confidence 999999999 77653 49999999999995 478999999999999665 77999999999999999996 579999
Q ss_pred HHHHHHHHHHHHHhhcccCCCC-cEEEEEEEcCCCcEEEcC
Q 026223 187 QETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLS 226 (241)
Q Consensus 187 ~ea~~la~~~l~~~~~~d~~~~-~iei~ii~~~~~~~k~l~ 226 (241)
+||++++++||..+.++|..++ +++|++|++++..++.++
T Consensus 161 eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~~~ 201 (205)
T 1iru_J 161 DHLFETISQAMLNAVDRDAVSGMGVIVHIIEKDKITTRTLK 201 (205)
T ss_dssp HHHHHHHHHHHHHHGGGBTTSCSCEEEEEEESSBEEEEEBC
T ss_pred HHHHHHHHHHHHHHHHhCcccCCceEEEEEcCCCEEEEEee
Confidence 9999999999999999998876 899999999976555554
No 42
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=100.00 E-value=2.4e-43 Score=290.38 Aligned_cols=190 Identities=18% Similarity=0.232 Sum_probs=173.2
Q ss_pred CCceEEEEEcCCEEEEEEeccCC-CCcccCCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Q 026223 30 AGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDV 108 (241)
Q Consensus 30 ~G~t~igi~~~dgVvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 108 (241)
+|+|+|||+++||||||+|+|.+ +.++..++.+||++|+ +++|+++|+.+|++.|.++++.+++.|+++++++++++.
T Consensus 7 ~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~ 85 (204)
T 1ryp_J 7 NGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEMFRYKTNLYKLKEERAIEPET 85 (204)
T ss_dssp SCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEET-TEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHH
T ss_pred CCCeEEEEEeCCEEEEEEcCCcccCCEEeeCCcceEEEeC-CEEEEeeEcHHHHHHHHHHHHHHHHHHhhccCCCCCHHH
Confidence 69999999999999999999999 4444456899999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccCccccceeeEEEEEcC-CCCcEEEEECCCcceeee-eEEeeCCChHHHHHHHHhhccCCCCCCH
Q 026223 109 LAKWIADKSQVYTQHAYMRPLGVVAMVLSIDE-ECGPRLFKCDPAGHFFGH-KATSAGLKEQEAINFLEKKMKNDPAFTF 186 (241)
Q Consensus 109 la~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~-~~gp~Ly~iDp~G~~~~~-~~~aiG~gs~~~~~~Le~~~~~~~~~s~ 186 (241)
+++++++.+ |+++.+ ||++++||+|||+ +++|+||.+||.|++.++ +++|+|+|+++++++||+.| +++||+
T Consensus 86 la~~l~~~~--y~~~~~--P~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~--~~~~s~ 159 (204)
T 1ryp_J 86 FTQLVSSSL--YERRFG--PYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLY--EPNLEP 159 (204)
T ss_dssp HHHHHHHHH--HTTTTS--CCCEEEEEEEECTTTCCEEEEEECTTCCEECCSSEEEEETTHHHHHHHHHHHC--CSSCCH
T ss_pred HHHHHHHHH--HHhcCC--CceEEEEEEEEeCCCCceEEEEECCCCCccccCceeEeccCHHHHHHHHhhhc--CCCcCH
Confidence 999999999 777644 9999999999996 578999999999999666 77999999999999999996 579999
Q ss_pred HHHHHHHHHHHHHhhcccCCCC-cEEEEEEEcCCCcEEEcC
Q 026223 187 QETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLS 226 (241)
Q Consensus 187 ~ea~~la~~~l~~~~~~d~~~~-~iei~ii~~~~~~~k~l~ 226 (241)
+||++++++||..+.++|..++ +++|++|++++..++.++
T Consensus 160 eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~~~ 200 (204)
T 1ryp_J 160 EDLFETISQALLNAADRDALSGWGAVVYIIKKDEVVKRYLK 200 (204)
T ss_dssp HHHHHHHHHHHHHHHTTBTTSCSCEEEEEEESSCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHhCcccCCcEEEEEEcCCCEEEEEee
Confidence 9999999999999999998765 799999999986555543
No 43
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=100.00 E-value=1.4e-43 Score=291.11 Aligned_cols=189 Identities=16% Similarity=0.261 Sum_probs=173.9
Q ss_pred ceEEEEEcCCEEEEEEeccCC-CCcccCCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026223 32 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 110 (241)
Q Consensus 32 ~t~igi~~~dgVvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 110 (241)
+|+|||+++||||||+|+|.+ ++++..++.+||++|+++++++++|+.+|++.+.++++.+++.|+++++++++++.++
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 81 (201)
T 1iru_K 2 EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAA 81 (201)
T ss_dssp CCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEccCcceEEEecCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 689999999999999999999 6898889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcceeeeeEEeeCCChHHHHHHHHhhccCCCCCCHHHHH
Q 026223 111 KWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETV 190 (241)
Q Consensus 111 ~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~~~~aiG~gs~~~~~~Le~~~~~~~~~s~~ea~ 190 (241)
+++++.+. |..+ ..|||++++||+|||++++|+||.+||.|++.+++++|+|+|+++++++||+.| +++||++||+
T Consensus 82 ~~~~~~l~-~~~~-~~~p~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~--~~~~s~eea~ 157 (201)
T 1iru_K 82 NFTRRNLA-DCLR-SRTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYY--TPTISRERAV 157 (201)
T ss_dssp HHHHHHHH-HHHT-SSSCCCEEEEEEEEETTTEEEEEEECTTCCEEECSEEEESHHHHHHHHHHHHHC--CTTCCHHHHH
T ss_pred HHHHHHHH-HHHh-cCCCccEEEEEEEEeCCCCeEEEEECCCcCeEECCEEEECCcHHHHHHHHHhcc--cCCCCHHHHH
Confidence 99987652 2212 337999999999999767899999999999999999999999999999999996 5799999999
Q ss_pred HHHHHHHHHhhcccCCCC-cEEEEEEEcCCCcEEEcC
Q 026223 191 QTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLS 226 (241)
Q Consensus 191 ~la~~~l~~~~~~d~~~~-~iei~ii~~~~~~~k~l~ 226 (241)
+++++||..+.+||..++ +++|++|++++ ++.++
T Consensus 158 ~l~~~al~~a~~rd~~sg~~i~v~vi~~~g--~~~~~ 192 (201)
T 1iru_K 158 ELLRKCLEELQKRFILNLPTFSVRIIDKNG--IHDLD 192 (201)
T ss_dssp HHHHHHHHHHHHTBCBCCCCEEEEEEETTE--EECCC
T ss_pred HHHHHHHHHHHhhccccCCceEEEEEcCCC--eEEee
Confidence 999999999999998776 79999999985 77665
No 44
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=100.00 E-value=5.2e-43 Score=292.05 Aligned_cols=186 Identities=18% Similarity=0.213 Sum_probs=173.0
Q ss_pred ceEEEEEcCCEEEEEEeccCC-CCcccCCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026223 32 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 110 (241)
Q Consensus 32 ~t~igi~~~dgVvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 110 (241)
+|+|||+++||||||+|+|.+ +.++..++.+||++|+++++|++||+.+|++.|.++++.+++.|+++++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~t~g~~~~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (222)
T 1ryp_I 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSAL 80 (222)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEEcCCcccCCeeecCCcccEEEecCCEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 589999999999999999999 5666678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcceeeeeEEeeCCChHHHHHHHHhhccCCCCCCHHHHH
Q 026223 111 KWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETV 190 (241)
Q Consensus 111 ~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~~~~aiG~gs~~~~~~Le~~~~~~~~~s~~ea~ 190 (241)
+++++.++.| .|||++++||||||+ +||+||.+||+|++.+++++|+|+|+++++++||+.| +++||++||+
T Consensus 81 ~~l~~~l~~~-----~~p~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~--~~~ms~eeA~ 152 (222)
T 1ryp_I 81 QMLKQHLFKY-----QGHIGAYLIVAGVDP-TGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHW--KQDLTKEEAI 152 (222)
T ss_dssp HHHHHHHHHT-----TTCSCEEEEEEEEET-TEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHC--CSSCCHHHHH
T ss_pred HHHHHHHhhc-----CCCCCeeEEEEEEeC-CCCEEEEECCCCCEEecCEEEECCCHHHHHHHHHhhC--CCCcCHHHHH
Confidence 9999998654 469999999999997 7899999999999999999999999999999999996 5799999999
Q ss_pred HHHHHHHHHhhcccCCCC-cEEEEEEEcCCCcEEEcC
Q 026223 191 QTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLS 226 (241)
Q Consensus 191 ~la~~~l~~~~~~d~~~~-~iei~ii~~~~~~~k~l~ 226 (241)
+++++||..+.++|..++ +++|++|+++++ ++.+.
T Consensus 153 ~la~~al~~~~~~d~~sg~~i~v~vi~~~g~-~~~~~ 188 (222)
T 1ryp_I 153 KLASDAIQAGIWNDLGSGSNVDVCVMEIGKD-AEYLR 188 (222)
T ss_dssp HHHHHHHHHHHHHCTTCCSCEEEEEEETTSC-EEEEE
T ss_pred HHHHHHHHHHHhccccCCCcEEEEEEECCCC-EEEEe
Confidence 999999999999998776 799999999863 66554
No 45
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=100.00 E-value=5.9e-42 Score=287.75 Aligned_cols=186 Identities=17% Similarity=0.215 Sum_probs=172.4
Q ss_pred ceEEEEEcCCEEEEEEeccCC-CCcccCCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026223 32 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 110 (241)
Q Consensus 32 ~t~igi~~~dgVvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 110 (241)
+|+|||+++||||||+|+|.+ +.++..++.+||++|+++++|++||+.+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 TTivgi~~~dgVVlaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 1iru_I 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTAN 80 (234)
T ss_dssp CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCceeccCcccceEEecCCEEEEecCcHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 589999999999999999999 4555567899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcceeeeeEEeeCCChHHHHHHHHhhccCCCCCCHHHHH
Q 026223 111 KWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETV 190 (241)
Q Consensus 111 ~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~~~~aiG~gs~~~~~~Le~~~~~~~~~s~~ea~ 190 (241)
+++++.++.| .+||++++||||||+ +||+||.+||.|++.+++++|+|+|++.++++||+.| +++||++||+
T Consensus 81 ~~l~~~l~~~-----~~~~~v~llvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~--~~~ms~eeA~ 152 (234)
T 1iru_I 81 RMLKQMLFRY-----RGYIGAALVLGGVDV-TGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKF--RPDMEEEEAK 152 (234)
T ss_dssp HHHHHHHHHT-----TTCSCEEEEEEEECS-SCEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHSC--CTTCCHHHHH
T ss_pred HHHHHHHHhc-----CCCCceeEEEEEEcC-CCCEEEEECCCCCEEecCEEEECCchHHHHHHHHHhc--cCCCCHHHHH
Confidence 9999998755 249999999999997 7899999999999999999999999999999999996 6799999999
Q ss_pred HHHHHHHHHhhcccCCCC-cEEEEEEEcCCCcEEEcCH
Q 026223 191 QTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSI 227 (241)
Q Consensus 191 ~la~~~l~~~~~~d~~~~-~iei~ii~~~~~~~k~l~~ 227 (241)
+++++||..+.++|..++ +++|++|++++ ++.+.+
T Consensus 153 ~la~~al~~a~~~d~~sg~~i~v~vi~k~g--~~~~~~ 188 (234)
T 1iru_I 153 NLVSEAIAAGIFNDLGSGSNIDLCVISKNK--LDFLRP 188 (234)
T ss_dssp THHHHHHHHHHHHCTTCCSCEEEEEEETTE--EECCSE
T ss_pred HHHHHHHHHHHHhcccCCCCEEEEEEECCc--EEEEcc
Confidence 999999999999998876 79999999985 776654
No 46
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=100.00 E-value=3.8e-36 Score=242.85 Aligned_cols=169 Identities=15% Similarity=0.147 Sum_probs=148.4
Q ss_pred CCceEEEEEcCCEEEEEEeccCC-CCc-ccCCCcceeEEe-cCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCH
Q 026223 30 AGVTSIGVRGKDSVCVVTQKKVP-DKL-LDHTSVTHLFPI-TKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPV 106 (241)
Q Consensus 30 ~G~t~igi~~~dgVvla~d~~~~-~~l-~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 106 (241)
+|+|+|||+++||||||+|+|.+ +.+ +.+++.+||++| +++++++++|..+|++.|.++++.+++.|+ +
T Consensus 4 ~GtTivgi~~~dgVvlaaD~r~t~g~~~i~~~~~~KI~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~y~---g----- 75 (180)
T 2z3b_A 4 HATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYN---G----- 75 (180)
T ss_dssp CCCCEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTT---T-----
T ss_pred CCeEEEEEEECCEEEEEECCCccCCCceEecCCCCcEEEECCCCEEEEeCchHHHHHHHHHHHHHHHHHhc---C-----
Confidence 69999999999999999999999 678 889999999999 999999999999999999999999999987 3
Q ss_pred HHHHHHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcceee--eeEEeeCCChHHHHHHHHhhccCCC-C
Q 026223 107 DVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFG--HKATSAGLKEQEAINFLEKKMKNDP-A 183 (241)
Q Consensus 107 ~~la~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~--~~~~aiG~gs~~~~~~Le~~~~~~~-~ 183 (241)
.+.+.++.+.+.+++.+.+|||++++||+ | +|+||.+||.|++.+ +++.|+|+|+++++++||+.|++.+ +
T Consensus 76 -~~~~~~~~l~~~~~~~~~~rp~~~~~lva--d---~p~ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~~~ 149 (180)
T 2z3b_A 76 -NLKRAAVELAKEWRSDKVLRKLEAMLIVM--N---QDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKHAGES 149 (180)
T ss_dssp -CHHHHHHHHHHHHHHCTTGGGCCCCEEEE--C---SSCEEEECTTCCEECCSSSEEEESTTHHHHHHHHHHHHHHHGGG
T ss_pred -ChHHHHHHHHHHHHhhhCcCcceEEEEEE--c---CCeEEEECCCCcEEEeCCCEEEECCCHHHHHHHHHHhhhccCCC
Confidence 23333444455566778899999999998 3 699999999999997 4999999999999999999974211 8
Q ss_pred CCHHHHHHHHHHHHHHhhcccCCCC-cEEEEEE
Q 026223 184 FTFQETVQTAISTLQSVLQEDFKAS-EIEVGVV 215 (241)
Q Consensus 184 ~s~~ea~~la~~~l~~~~~~d~~~~-~iei~ii 215 (241)
||.|| ++.+||+.+.+||+.++ +++|.+|
T Consensus 150 mt~ee---l~~~al~~a~~rd~~sg~~i~v~~i 179 (180)
T 2z3b_A 150 MSASE---IARAALETAGEICVYTNDQIILEEL 179 (180)
T ss_dssp CCHHH---HHHHHHHHHHHHCTTCCSCCEEEEE
T ss_pred CCHHH---HHHHHHHHHHHhcCccCCeEEEEEE
Confidence 99999 46799999999999887 7999887
No 47
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=100.00 E-value=1.6e-35 Score=237.35 Aligned_cols=166 Identities=14% Similarity=0.114 Sum_probs=144.8
Q ss_pred ceEEEEEcCCEEEEEEeccCC-CCcccCCCcceeEEe-cCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 026223 32 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPI-TKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVL 109 (241)
Q Consensus 32 ~t~igi~~~dgVvla~d~~~~-~~l~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 109 (241)
+|+|||+++||||||+|+|.+ +.++.+++.+||++| +++++++++|+.+|++.|.++++.+++.|+.+ .++.+
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~-----~~~~~ 75 (171)
T 1m4y_A 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGN-----LTKAA 75 (171)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTC-----HHHHH
T ss_pred CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEEEeCCCCEEEEeCccHHHHHHHHHHHHHHHHHhccc-----HHHHH
Confidence 589999999999999999999 788888999999999 99999999999999999999999999988743 24444
Q ss_pred HHHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcceeeee--EEeeCCChHHHHHHHHhhccCCCCCCHH
Q 026223 110 AKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHK--ATSAGLKEQEAINFLEKKMKNDPAFTFQ 187 (241)
Q Consensus 110 a~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~~--~~aiG~gs~~~~~~Le~~~~~~~~~s~~ 187 (241)
++. .+.+++++..|||++++|++ | +|+||.+||.|++.+++ +.|+|+|+++++++||+.|++ ++||.
T Consensus 76 ~~l----~~~~~~~~~~~~~~~~~lv~--D---~p~Ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~-~~ms~- 144 (171)
T 1m4y_A 76 VEL----AKDWRTDRVLRRLEALLLVA--D---KENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAKALLRN-TDLSA- 144 (171)
T ss_dssp HHH----HHHHHHCTTGGGCCCEEEEE--C---SSCEEEECTTSCEECCSSSEEEESTTHHHHHHHHHHHHHH-CCCCH-
T ss_pred HHH----HHHHHHhCCCCceEEEEEEE--c---CCEEEEECCCCCEEecCCCEEEECCcHHHHHHHHHHhccc-CCCCH-
Confidence 443 33455566788999999988 5 79999999999999988 999999999999999999742 78997
Q ss_pred HHHHHHHHHHHHhhcccCCCC-cEEEEEE
Q 026223 188 ETVQTAISTLQSVLQEDFKAS-EIEVGVV 215 (241)
Q Consensus 188 ea~~la~~~l~~~~~~d~~~~-~iei~ii 215 (241)
++++++||+.+.+||..++ +++|.++
T Consensus 145 --~~l~~~al~~a~~rd~~sg~~i~v~~~ 171 (171)
T 1m4y_A 145 --REIVEKAMTIAGEICIYTNQNIVIEEV 171 (171)
T ss_dssp --HHHHHHHHHHHHHHCTTCCSCCEEEEC
T ss_pred --HHHHHHHHHHHHHhCcccCCeEEEEEC
Confidence 6789999999999998876 7888753
No 48
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=100.00 E-value=2.9e-35 Score=236.44 Aligned_cols=167 Identities=14% Similarity=0.094 Sum_probs=145.7
Q ss_pred ceEEEEEcCCEEEEEEeccCC-CCcccCCCcceeEEe-cCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 026223 32 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPI-TKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVL 109 (241)
Q Consensus 32 ~t~igi~~~dgVvla~d~~~~-~~l~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 109 (241)
+|+|||+++||||||+|+|.+ +.++.+++.+||++| +++++++++|+.+|++.|.++++.+++.|+. +.
T Consensus 1 tT~vgi~~~dgVvlaaD~r~t~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~------~~--- 71 (174)
T 1g3k_A 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQG------HL--- 71 (174)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTT------CH---
T ss_pred CeEEEEEECCEEEEEECCCCccCCeeEeCCCCcEEEECCCCEEEEeCccHHHHHHHHHHHHHHHHHhcC------cH---
Confidence 589999999999999999999 678888999999999 9999999999999999999999999999874 33
Q ss_pred HHHHHHHHHHhhhccCccccceeeEEEEEcCCCCcEEEEECCCcceeeee---EEeeCCChHHHHHHHHhhccCCCCCCH
Q 026223 110 AKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHK---ATSAGLKEQEAINFLEKKMKNDPAFTF 186 (241)
Q Consensus 110 a~~ls~~~~~~t~~~~~rP~~v~~iv~G~d~~~gp~Ly~iDp~G~~~~~~---~~aiG~gs~~~~~~Le~~~~~~~~~s~ 186 (241)
.+.++.+.+.+++++.+||++ ++++|+| +|+||.+||+|++.+++ +.|+|+|+++++++||+.|++ ++||.
T Consensus 72 ~~~~~~l~~~~~~~~~~r~~~--~~l~g~d---~p~Ly~~d~~G~~~~~~~~~~~a~Gsgs~~a~~~le~~~~~-~~mt~ 145 (174)
T 1g3k_A 72 LKSAVELAKDWRTDRALRKLE--AMLIVAD---EKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVEN-TELSA 145 (174)
T ss_dssp HHHHHHHHHHHHHSTTGGGCC--CEEEEEC---SSCEEEEETTTEEECCCTTCEEEESTTHHHHHHHHHHHHHH-CCCCH
T ss_pred HHHHHHHHHHHHhccCcCcce--EEEEEEC---CCEEEEEcCCCcEEecCCCcEEEEcccHHHHHHHHHHhccc-CCCCH
Confidence 344444555566777788865 6777887 69999999999999988 999999999999999999742 78995
Q ss_pred HHHHHHHHHHHHHhhcccCCCC-cEEEEEEE
Q 026223 187 QETVQTAISTLQSVLQEDFKAS-EIEVGVVS 216 (241)
Q Consensus 187 ~ea~~la~~~l~~~~~~d~~~~-~iei~ii~ 216 (241)
+ +++++||+.+.+||..++ +++|++|+
T Consensus 146 ~---~l~~~al~~a~~rd~~sg~~i~v~~i~ 173 (174)
T 1g3k_A 146 H---EIVEKSLRIAGDICVFTNTNFTIEELP 173 (174)
T ss_dssp H---HHHHHHHHHHHHHCTTCCSCCEEEEEC
T ss_pred H---HHHHHHHHHHHHhccccCCceEEEEec
Confidence 5 799999999999998876 79999985
No 49
>1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA complex, double helix, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.4.5.21
Probab=66.47 E-value=8.9 Score=26.73 Aligned_cols=27 Identities=11% Similarity=0.154 Sum_probs=22.5
Q ss_pred EEEEEcCCCcEEEcCHHHHHHHHHhhh
Q 026223 212 VGVVSKENPEFRVLSIEEIDEHLTAIS 238 (241)
Q Consensus 212 i~ii~~~~~~~k~l~~~ei~~~l~~i~ 238 (241)
|.+.+++.+.|+.+++++|..+|..--
T Consensus 31 I~W~~~~~g~Fkl~d~~~VArlWG~rK 57 (97)
T 1yo5_C 31 IRWLNKEKGIFKIEDSAQVARLWGIRK 57 (97)
T ss_dssp EEEEETTTTEEEESCHHHHHHHHHHHH
T ss_pred eEeecCCCCEEEecCHHHHHHHHHhcC
Confidence 678887767899999999999987543
No 50
>2dao_A Transcription factor ETV6; ETS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.58 E-value=11 Score=27.15 Aligned_cols=28 Identities=14% Similarity=0.121 Sum_probs=23.4
Q ss_pred EEEEEEcCCCcEEEcCHHHHHHHHHhhh
Q 026223 211 EVGVVSKENPEFRVLSIEEIDEHLTAIS 238 (241)
Q Consensus 211 ei~ii~~~~~~~k~l~~~ei~~~l~~i~ 238 (241)
-|.+.+++++.|+.++|++|..+|..--
T Consensus 27 ~I~W~~~~~g~Fklvdp~~VArlWG~rK 54 (118)
T 2dao_A 27 FIRWEDKESKIFRIVDPNGLARLWGNHK 54 (118)
T ss_dssp TEEEEEGGGTEEEESCHHHHHHHHHHHT
T ss_pred ceEeeCCCCCeEEEeCHHHHHHHHHhcc
Confidence 3788888877899999999999998543
No 51
>3jtg_A ETS-related transcription factor ELF-3; ELF3, protein-DNA complex, type II TGF-beta receptor, activa alternative splicing, cytoplasm; HET: DNA; 2.20A {Mus musculus} SCOP: a.4.5.21
Probab=55.72 E-value=17 Score=25.52 Aligned_cols=27 Identities=11% Similarity=0.143 Sum_probs=22.8
Q ss_pred EEEEEcCCCcEEEcCHHHHHHHHHhhh
Q 026223 212 VGVVSKENPEFRVLSIEEIDEHLTAIS 238 (241)
Q Consensus 212 i~ii~~~~~~~k~l~~~ei~~~l~~i~ 238 (241)
|.+++++.++|+.++|++|..+|..--
T Consensus 25 I~W~~~~~g~Fkl~dp~~VArlWG~rK 51 (103)
T 3jtg_A 25 MKWENRHEGVFKFLRSEAVAQLWGQKK 51 (103)
T ss_dssp EEEEETTTTEEEESSHHHHHHHHHHHT
T ss_pred cccccCCCceEEecCHHHHHHHHHhcc
Confidence 788888766899999999999987643
No 52
>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1
Probab=55.14 E-value=26 Score=25.20 Aligned_cols=32 Identities=19% Similarity=0.237 Sum_probs=25.8
Q ss_pred CCcEEEEEEEcCCCc-EEEcCHHHHHHHHHhhh
Q 026223 207 ASEIEVGVVSKENPE-FRVLSIEEIDEHLTAIS 238 (241)
Q Consensus 207 ~~~iei~ii~~~~~~-~k~l~~~ei~~~l~~i~ 238 (241)
++.+-|.+++++.++ +|.+|++++-++..+|.
T Consensus 66 ~~~~vVkVvD~~TgEVIRqIPpEe~L~l~~~l~ 98 (117)
T 2hc5_A 66 LNEYYVKVIEDSTNEVIREIPPKRWLDFYAAMT 98 (117)
T ss_dssp TTEEEEEEEETTTTEEEEEECHHHHHHHHHHHH
T ss_pred CCcEEEEEEECCCCcEEEeCChHHHHHHHHHHH
Confidence 445889999988665 59999999988887765
No 53
>1wwx_A E74-like factor 5 ESE-2B; DNA binding, transcriptional activation and repression, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.21
Probab=50.43 E-value=15 Score=25.98 Aligned_cols=26 Identities=19% Similarity=0.213 Sum_probs=21.8
Q ss_pred EEEEEcCCCcEEEcCHHHHHHHHHhh
Q 026223 212 VGVVSKENPEFRVLSIEEIDEHLTAI 237 (241)
Q Consensus 212 i~ii~~~~~~~k~l~~~ei~~~l~~i 237 (241)
|.+.+++.+.|+.+++++|..+|..-
T Consensus 29 I~W~~~~~g~Fkl~d~e~VArlWG~r 54 (107)
T 1wwx_A 29 LEWEDREQGIFRVVKSEALAKMWGQR 54 (107)
T ss_dssp CEEEETTTTEEECSCHHHHHHHHHHH
T ss_pred EEeecCCCCEEEecCHHHHHHHHHhc
Confidence 67888766689999999999998753
No 54
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=49.52 E-value=32 Score=23.44 Aligned_cols=52 Identities=13% Similarity=0.168 Sum_probs=40.0
Q ss_pred CCCCCHHHHHHHHHHHHHHhhcccCCCCcEEEEEEEcCCCcEEEcCHHHHHHHHHhh
Q 026223 181 DPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAI 237 (241)
Q Consensus 181 ~~~~s~~ea~~la~~~l~~~~~~d~~~~~iei~ii~~~~~~~k~l~~~ei~~~l~~i 237 (241)
.++++.++..+.+++.++.. ....+.+.+++.+|..+...+.+|++..++-+
T Consensus 23 ~~~i~~~~L~~kv~~~~~~~-----~~~~f~lky~DEeGD~itisSd~EL~eAl~l~ 74 (89)
T 1vd2_A 23 EPSISFEGLCNEVRDMCSFD-----NEQLFTMKWIDEEGDPCTVSSQLELEEAFRLY 74 (89)
T ss_dssp CTTCCHHHHHHHHHHHTTCC-----SSCCEEEEECCSSSCCEECCSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhCCC-----CCCeEEEEEECCCCCcccccCHHHHHHHHHHH
Confidence 45789999888877755421 12359999999987778999999999998744
No 55
>3rj2_X ORF158L protein, putative uncharacterized protein; histone 3, protein binding; 2.20A {Singapore grouper iridovirus}
Probab=31.13 E-value=27 Score=25.13 Aligned_cols=19 Identities=21% Similarity=0.300 Sum_probs=16.1
Q ss_pred CCCCCccceecCCCceeEE
Q 026223 7 GGYDRHITIFSPEGRLFQV 25 (241)
Q Consensus 7 ~~yd~~~t~fsp~G~l~Q~ 25 (241)
.+.|...|.|+|+||+.-.
T Consensus 53 ~gm~h~vTfF~~~Grl~~h 71 (138)
T 3rj2_X 53 MFMRHRVTFFNATGRYITH 71 (138)
T ss_dssp TTCEEEEEEECTTSCEEEE
T ss_pred CcceeEEEEEcCCCcEEEE
Confidence 4668889999999998766
No 56
>1bc8_C SAP-1, protein (SAP-1 ETS domain); DNA-binding domain, winged helix-turn-helix, DNA-binding specificity, transcription/DNA complex; HET: DNA; 1.93A {Homo sapiens} SCOP: a.4.5.21 PDB: 1bc7_C* 1k6o_A 1dux_C*
Probab=29.58 E-value=26 Score=24.10 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=20.1
Q ss_pred EEEEEcCCCcEEEcCHHHHHHHHHhh
Q 026223 212 VGVVSKENPEFRVLSIEEIDEHLTAI 237 (241)
Q Consensus 212 i~ii~~~~~~~k~l~~~ei~~~l~~i 237 (241)
|.+.++++ .|+.+++++|..+|..-
T Consensus 24 I~W~~~~g-~Fkl~d~~~VArlWG~r 48 (93)
T 1bc8_C 24 ICWTSNDG-QFKLLQAEEVARLWGIR 48 (93)
T ss_dssp SEECSSSS-EEECTTHHHHHHHHHHH
T ss_pred eEEeCCCC-EEEecCHHHHHHHHHhc
Confidence 55666664 79999999999998853
No 57
>1pue_E Protein (transcription factor PU.1 (TF PU.1)); complex (transcription regulating/DNA), oncogene, transforming protein, DNA- binding, activator; HET: DNA; 2.10A {Mus musculus} SCOP: a.4.5.21
Probab=29.35 E-value=85 Score=21.29 Aligned_cols=26 Identities=15% Similarity=0.158 Sum_probs=21.4
Q ss_pred EEEEEcCCCcEEEc--CHHHHHHHHHhh
Q 026223 212 VGVVSKENPEFRVL--SIEEIDEHLTAI 237 (241)
Q Consensus 212 i~ii~~~~~~~k~l--~~~ei~~~l~~i 237 (241)
|.+.+++.+.|+.+ ++++|..+|..-
T Consensus 21 I~W~~~~~g~Fk~~~~~~e~VArlWG~r 48 (89)
T 1pue_E 21 IWWVDKDKGTFQFSSKHKEALAHRWGIQ 48 (89)
T ss_dssp EEEEETTTTEEEECTTTHHHHHHHHHHH
T ss_pred eEeecCCCcEEEEecCChHHHHHHhhcc
Confidence 78888776679986 799999999864
No 58
>1hbx_G ETS-domain protein ELK-4; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: a.4.5.21
Probab=28.34 E-value=53 Score=24.75 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=21.4
Q ss_pred EEEEEcCCCcEEEcCHHHHHHHHHhhhc
Q 026223 212 VGVVSKENPEFRVLSIEEIDEHLTAISE 239 (241)
Q Consensus 212 i~ii~~~~~~~k~l~~~ei~~~l~~i~~ 239 (241)
|.|.++++ .||.+++++|..+|..--+
T Consensus 25 I~Wt~~~g-eFklvdpe~VArLWG~rKn 51 (157)
T 1hbx_G 25 ICWTSNDG-QFKLLQAEEVARLWGIRKN 51 (157)
T ss_dssp EEECSSSS-CEEETTHHHHHHHHHHGGG
T ss_pred eEEeCCCC-EEEecCcHHHHHHHHhccC
Confidence 56777765 7999999999999986433
No 59
>1fli_A FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: a.4.5.21
Probab=26.38 E-value=32 Score=23.93 Aligned_cols=26 Identities=15% Similarity=0.229 Sum_probs=19.7
Q ss_pred EEEEEcCCCcEEEcCHHHHHHHHHhhh
Q 026223 212 VGVVSKENPEFRVLSIEEIDEHLTAIS 238 (241)
Q Consensus 212 i~ii~~~~~~~k~l~~~ei~~~l~~i~ 238 (241)
|.+.++ ++.|+.+++++|..+|..--
T Consensus 25 I~W~~~-~g~Fklvd~e~VArlWG~rK 50 (98)
T 1fli_A 25 ITWEGT-NGEFKMTDPDEVARRWGERK 50 (98)
T ss_dssp EECTTS-SSSCEECCHHHHHHHHHHHT
T ss_pred eEEeCC-CCEEEEcCHHHHHHHHHhcc
Confidence 555554 45799999999999998543
No 60
>3fpw_A HBPS, extracellular HAEM-binding protein; heme binding protein; 1.60A {Streptomyces reticuli} PDB: 3fpv_A
Probab=24.78 E-value=1.2e+02 Score=23.69 Aligned_cols=37 Identities=14% Similarity=0.302 Sum_probs=31.0
Q ss_pred CCCCCHHHHHHHHHHHHHHhhcccCCCCcEEEEEEEcCCC
Q 026223 181 DPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENP 220 (241)
Q Consensus 181 ~~~~s~~ea~~la~~~l~~~~~~d~~~~~iei~ii~~~~~ 220 (241)
.+.+|+++|.+++..++..+.++.. .+.|.|++..+.
T Consensus 62 ~~~ltl~~A~~l~~aA~~~A~~~g~---pV~IaVvD~~G~ 98 (192)
T 3fpw_A 62 STHLTLEAATKAARAAVEAAEKDGR---HVSVAVVDRNGN 98 (192)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHTTC---CCEEEEEETTSC
T ss_pred cCCCCHHHHHHHHHHHHHHHHhcCC---CEEEEEEeCCCC
Confidence 4679999999999999999997655 488888887664
No 61
>4avp_A ETS translocation variant 1; transcription, transcriptional activation and repression, DN binding protein, E twenty-SIX, erwing sarcoma; 1.82A {Homo sapiens} PDB: 4b06_A
Probab=24.60 E-value=63 Score=22.73 Aligned_cols=26 Identities=15% Similarity=0.299 Sum_probs=20.5
Q ss_pred EEEEEcCCCcEEEcCHHHHHHHHHhhh
Q 026223 212 VGVVSKENPEFRVLSIEEIDEHLTAIS 238 (241)
Q Consensus 212 i~ii~~~~~~~k~l~~~ei~~~l~~i~ 238 (241)
|.++++++ +|+.+++++|..+|..--
T Consensus 31 I~W~~~~~-~Fkl~dp~~VA~lWG~rK 56 (106)
T 4avp_A 31 IAWTGRGM-EFKLIEPEEVARRWGIQK 56 (106)
T ss_dssp EEECSSTT-EEEESSHHHHHHHHHHHT
T ss_pred CcccCCCc-eEEecCHHHHHHHHHhcc
Confidence 45667654 799999999999988643
No 62
>3kol_A Oxidoreductase, glyoxalase/bleomycin resistance protein/dioxygenase; metal ION binding, NYSGXRC, PSI2, structural genomics; 1.90A {Nostoc punctiforme pcc 73102}
Probab=23.32 E-value=1e+02 Score=21.42 Aligned_cols=21 Identities=19% Similarity=0.461 Sum_probs=15.7
Q ss_pred CCcEEEEECCCcceeeeeEEe
Q 026223 142 CGPRLFKCDPAGHFFGHKATS 162 (241)
Q Consensus 142 ~gp~Ly~iDp~G~~~~~~~~a 162 (241)
.+-.+|..||.|+..+.....
T Consensus 132 ~g~~~~~~DPdG~~iel~~~~ 152 (156)
T 3kol_A 132 TGRGVYFYDPDGFMIEIRCDP 152 (156)
T ss_dssp CCEEEEEECTTSCEEEEEECC
T ss_pred CccEEEEECCCCCEEEEEecC
Confidence 455788999999988765433
No 63
>1awc_A Protein (GA binding protein alpha); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: a.4.5.21
Probab=22.80 E-value=41 Score=23.90 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=20.3
Q ss_pred EEEEEcCCCcEEEcCHHHHHHHHHhh
Q 026223 212 VGVVSKENPEFRVLSIEEIDEHLTAI 237 (241)
Q Consensus 212 i~ii~~~~~~~k~l~~~ei~~~l~~i 237 (241)
|.+.+++ +.|+.+++++|..+|..-
T Consensus 20 I~W~~~~-geFkl~d~e~VArlWG~r 44 (110)
T 1awc_A 20 ISWVGDE-GEFKLNQPELVAQKWGQR 44 (110)
T ss_dssp SEECSSS-SEEECSSHHHHHHHHHHH
T ss_pred eEEeCCC-CEEEecCHHHHHHHHHHc
Confidence 5677765 579999999999998754
No 64
>2lpd_A Uncharacterized protein; infectious disease, melioidosis, seattle structural genomics for infectious disease, ssgcid, drug target; NMR {Burkholderia pseudomallei}
Probab=22.71 E-value=1.3e+02 Score=20.63 Aligned_cols=49 Identities=6% Similarity=0.015 Sum_probs=28.2
Q ss_pred cCCCCcEEEEECCCcceeeee--------EEe-eCCC-hHHHHHHHHhhccCCCCCCHH
Q 026223 139 DEECGPRLFKCDPAGHFFGHK--------ATS-AGLK-EQEAINFLEKKMKNDPAFTFQ 187 (241)
Q Consensus 139 d~~~gp~Ly~iDp~G~~~~~~--------~~a-iG~g-s~~~~~~Le~~~~~~~~~s~~ 187 (241)
|++.+.++..++..|.+.-++ ..+ -|.+ .+.|..++|..|.+-...|+.
T Consensus 21 Dd~~~~f~VLvN~E~QYSLWP~~~~VPaGW~~v~~~~sr~~CL~yIe~~WTDMRP~SLr 79 (95)
T 2lpd_A 21 SMDDELYFVVRNNEGQYSVWMDGRSLPAGWETVGEPATKQQCLQRIEQLWTDMVPASVR 79 (95)
T ss_dssp SSCCCCEEEEECSSCSCEEEETTSCCCTTCEEEEEEECHHHHHHHHHTTTTTCCCTHHH
T ss_pred cCCCCcEEEEEcCCCccccCcCCCCCCCCcccCCCCCCHHHHHHHHHHHccCCCchhhh
Confidence 444556666666666655332 112 2323 678999999998653334443
No 65
>2lf8_A Transcription factor ETV6; auto-inhibition; NMR {Mus musculus}
Probab=28.19 E-value=18 Score=26.41 Aligned_cols=26 Identities=15% Similarity=0.157 Sum_probs=20.7
Q ss_pred EEEEEEcCCCcEEEcCHHHHHHHHHh
Q 026223 211 EVGVVSKENPEFRVLSIEEIDEHLTA 236 (241)
Q Consensus 211 ei~ii~~~~~~~k~l~~~ei~~~l~~ 236 (241)
-|.+.+++++.||.+++++|..+|..
T Consensus 23 ~I~Wt~k~~geFklvdpe~VArlWG~ 48 (128)
T 2lf8_A 23 FIRWEDKESKIFRIVDPNGLARLWGN 48 (128)
Confidence 46677776667999999999998875
No 66
>2ypr_A Protein FEV; transcription; 2.64A {Homo sapiens} PDB: 1fli_A
Probab=21.24 E-value=69 Score=22.36 Aligned_cols=26 Identities=12% Similarity=0.188 Sum_probs=19.3
Q ss_pred EEEEEcCCCcEEEcCHHHHHHHHHhhh
Q 026223 212 VGVVSKENPEFRVLSIEEIDEHLTAIS 238 (241)
Q Consensus 212 i~ii~~~~~~~k~l~~~ei~~~l~~i~ 238 (241)
|.+. .++++|+.+++++|..+|..--
T Consensus 27 I~W~-~~~g~Fkl~dp~~VArlWG~rK 52 (102)
T 2ypr_A 27 IAWE-GGHGEFKLTDPDEVARRWGERK 52 (102)
T ss_dssp CEEC-SSTTEEECSSHHHHHHHHHHHT
T ss_pred cccc-CCCceEEecChHHHHHHHHHhc
Confidence 3453 3455799999999999988643
No 67
>2a2l_A Unknown; structural genomics, PSI, protein structure initiat YORK SGX research center for structural genomics, NYSGXRC, function; 2.20A {Klebsiella pneumoniae} SCOP: d.110.9.1
Probab=20.48 E-value=86 Score=23.10 Aligned_cols=36 Identities=14% Similarity=0.177 Sum_probs=29.4
Q ss_pred CCCCHHHHHHHHHHHHHHhhcccCCCCcEEEEEEEcCCC
Q 026223 182 PAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENP 220 (241)
Q Consensus 182 ~~~s~~ea~~la~~~l~~~~~~d~~~~~iei~ii~~~~~ 220 (241)
+.+|+++|.+++..+...+.++.. .+.|.|++..+.
T Consensus 10 ~~lt~~~A~~l~~aa~~~A~~~g~---~v~IaVvD~~G~ 45 (145)
T 2a2l_A 10 QTITLAAAQQMAAAVEKKATEINV---AVVFSVVDRGGN 45 (145)
T ss_dssp EEECHHHHHHHHHHHHHHHHHTTC---CCEEEEEETTSC
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCC---CEEEEEEECCCC
Confidence 458999999999999999887643 488999987653
Done!