BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026225
(241 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GPO|H Chain H, Crystal Structure Of The Rationally Designed Antibody M41
As A Fab Fragment
pdb|1GPO|I Chain I, Crystal Structure Of The Rationally Designed Antibody M41
As A Fab Fragment
Length = 221
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 17/102 (16%)
Query: 154 VEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCM 213
V+ +E GP++V+ ++ + V G S W + GNR+ FV+Y + A
Sbjct: 2 VKLQESGPSLVKPSQTLSLTCSVTGDSITSDFWSWIRQFPGNRLEYMGFVQYSGETAYNP 61
Query: 214 A----VAVRRKSKKLGGYL----ITTKR---------HKDFW 238
+ +++ R + K YL +TT+ H D+W
Sbjct: 62 SLKSRISITRDTSKNQYYLDLNSVTTEDTAVYYCANWHGDYW 103
>pdb|2DQD|H Chain H, Crystal Structure Of Hyhel-10 Fv Mutant (Hy50f) Complexed
With Hen Egg Lysozyme
Length = 114
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 154 VEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEY 205
V+ +E GP++V+ ++ + V G S W + GNR+ FV Y
Sbjct: 2 VQLQESGPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGFVSY 53
>pdb|3HFM|H Chain H, Structure Of An Antibody-Antigen Complex. Crystal
Structure Of The HyHEL-10 Fab-Lysozyme Complex
Length = 215
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 25/52 (48%)
Query: 154 VEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEY 205
V+ +E GP++V+ ++ + V G S W + GNR+ +V Y
Sbjct: 2 VQLQESGPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSY 53
>pdb|3D9A|H Chain H, High Resolution Crystal Structure Structure Of Hyhel10 Fab
Complexed To Hen Egg Lysozyme
Length = 210
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 25/52 (48%)
Query: 154 VEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEY 205
V+ +E GP++V+ ++ + V G S W + GNR+ +V Y
Sbjct: 2 VQLQESGPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSY 53
>pdb|1IC4|H Chain H, Crystal Structure Of Hyhel-10 Fv Mutant(Hd32a)-Hen
Lysozyme Complex
Length = 114
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 25/52 (48%)
Query: 154 VEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEY 205
V+ +E GP++V+ ++ + V G S W + GNR+ +V Y
Sbjct: 2 VQLQESGPSLVKPSQTLSLTCSVTGDSITSAYWSWIRKFPGNRLEYMGYVSY 53
>pdb|1IC7|H Chain H, Crystal Structure Of Hyhel-10 Fv Mutant(Hd32a99a)-Hen
Lysozyme Complex
Length = 114
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 25/52 (48%)
Query: 154 VEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEY 205
V+ +E GP++V+ ++ + V G S W + GNR+ +V Y
Sbjct: 2 VQLQESGPSLVKPSQTLSLTCSVTGDSITSAYWSWIRKFPGNRLEYMGYVSY 53
>pdb|2DQH|H Chain H, Crystal Structure Of Hyhel-10 Fv Mutant (Hy58a) Complexed
With Hen Egg Lysozyme
Length = 114
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 25/52 (48%)
Query: 154 VEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEY 205
V+ +E GP++V+ ++ + V G S W + GNR+ +V Y
Sbjct: 2 VQLQESGPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSY 53
>pdb|1C08|B Chain B, Crystal Structure Of Hyhel-10 Fv-Hen Lysozyme Complex
pdb|1J1O|H Chain H, Crystal Structure Of Hyhel-10 Fv Mutant Ly50f Complexed
With Hen Egg White Lysozyme
pdb|1J1P|H Chain H, Crystal Structure Of Hyhel-10 Fv Mutant Ls91a Complexed
With Hen Egg White Lysozyme
pdb|1J1X|H Chain H, Crystal Structure Of Hyhel-10 Fv Mutant Ls93a Complexed
With Hen Egg White Lysozyme
pdb|2DQI|H Chain H, Crystal Structure Of Hyhel-10 Fv Mutant (Ly50a) Complexed
With Hen Egg Lysozyme
pdb|2DQJ|H Chain H, Crystal Structure Of Hyhel-10 Fv (Wild-Type) Complexed
With Hen Egg Lysozyme At 1.8a Resolution
pdb|3A67|H Chain H, Crystal Structure Of Hyhel-10 Fv Mutant Ln31d Complexed
With White Lysozyme
pdb|3A6B|H Chain H, Crystal Structure Of Hyhel-10 Fv Mutant Ln32d Complexed
With White Lysozyme
pdb|3A6C|H Chain H, Crystal Structure Of Hyhel-10 Fv Mutant Ln92d Complexed
With White Lysozyme
Length = 114
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 25/52 (48%)
Query: 154 VEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEY 205
V+ +E GP++V+ ++ + V G S W + GNR+ +V Y
Sbjct: 2 VQLQESGPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSY 53
>pdb|1IC5|H Chain H, Crystal Structure Of Hyhel-10 Fv Mutant(Hd99a)-Hen
Lysozyme Complex
Length = 114
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 25/52 (48%)
Query: 154 VEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEY 205
V+ +E GP++V+ ++ + V G S W + GNR+ +V Y
Sbjct: 2 VQLQESGPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSY 53
>pdb|2ZNW|A Chain A, Crystal Structure Of Scfv10 In Complex With Hen Egg
Lysozyme
pdb|2ZNW|B Chain B, Crystal Structure Of Scfv10 In Complex With Hen Egg
Lysozyme
Length = 242
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 25/52 (48%)
Query: 154 VEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEY 205
++ +E GP++V+ ++ + V G S W + GNR+ +V Y
Sbjct: 124 IQLQESGPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSY 175
>pdb|2DQC|H Chain H, Crystal Structure Of Hyhel-10 Fv Mutant(Hy33f) Complexed
With Hen Egg Lysozyme
Length = 114
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 25/52 (48%)
Query: 154 VEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEY 205
V+ +E GP++V+ ++ + V G S W + GNR+ +V Y
Sbjct: 2 VQLQESGPSLVKPSQTLSLTCSVTGDSITSDFWSWIRKFPGNRLEYMGYVSY 53
>pdb|3LRM|A Chain A, Structure Of Alfa-Galactosidase From Saccharomyces
Cerevisiae With Raffinose
pdb|3LRM|B Chain B, Structure Of Alfa-Galactosidase From Saccharomyces
Cerevisiae With Raffinose
pdb|3LRM|C Chain C, Structure Of Alfa-Galactosidase From Saccharomyces
Cerevisiae With Raffinose
pdb|3LRM|D Chain D, Structure Of Alfa-Galactosidase From Saccharomyces
Cerevisiae With Raffinose
Length = 479
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 11/60 (18%)
Query: 177 LGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRKSKKLGGYLITTKRHKD 236
LG KK ++TW ++ +WA NRV N+ A+ R K+ Y T + +KD
Sbjct: 382 LGSKKLTSTWDIYDLWA-NRV----------DNSTASAILGRNKTATGILYNATEQSYKD 430
>pdb|3LRK|A Chain A, Structure Of Alfa-Galactosidase (Mel1) From Saccharomyces
Cerevisiae
pdb|3LRL|A Chain A, Structure Of Alfa-Galactosidase (Mel1) From Saccharomyces
Cerevisiae With Melibiose
Length = 479
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 11/60 (18%)
Query: 177 LGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRKSKKLGGYLITTKRHKD 236
LG KK ++TW ++ +WA NRV N+ A+ R K+ Y T + +KD
Sbjct: 382 LGSKKLTSTWDIYDLWA-NRV----------DNSTASAILGRNKTATGILYNATEQSYKD 430
>pdb|1Q16|B Chain B, Crystal Structure Of Nitrate Reductase A, Narghi, From
Escherichia Coli
pdb|1R27|B Chain B, Crystal Structure Of Nargh Complex
pdb|1R27|D Chain D, Crystal Structure Of Nargh Complex
pdb|1SIW|B Chain B, Crystal Structure Of The Apomolybdo-Narghi
pdb|1Y5I|B Chain B, The Crystal Structure Of The Narghi Mutant Nari-K86a
pdb|1Y5L|B Chain B, The Crystal Structure Of The Narghi Mutant Nari-H66y
pdb|1Y5N|B Chain B, The Crystal Structure Of The Narghi Mutant Nari-K86a In
Complex With Pentachlorophenol
pdb|3IR5|B Chain B, Crystal Structure Of Narghi Mutant Narg-H49c
pdb|3IR6|B Chain B, Crystal Structure Of Narghi Mutant Narg-H49s
pdb|3IR7|B Chain B, Crystal Structure Of Narghi Mutant Narg-R94s
Length = 512
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 161 PAIVEEARKQGVALLVLGQKKRSTTWRLFMMW 192
P ++E+A K G+ L V+ ++S +++ M W
Sbjct: 306 PKVIEQAIKDGIPLSVIEAAQQSPVYKMAMEW 337
>pdb|1Y4Z|B Chain B, The Crystal Structure Of Nitrate Reductase A, Narghi, In
Complex With The Q-Site Inhibitor Pentachlorophenol
Length = 512
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 161 PAIVEEARKQGVALLVLGQKKRSTTWRLFMMW 192
P ++E+A K G+ L V+ ++S +++ M W
Sbjct: 306 PKVIEQAIKDGIPLSVIEAAQQSPVYKMAMEW 337
>pdb|3EGW|B Chain B, The Crystal Structure Of The Narghi Mutant Narh - C16a
Length = 509
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 161 PAIVEEARKQGVALLVLGQKKRSTTWRLFMMW 192
P ++E+A K G+ L V+ ++S +++ M W
Sbjct: 306 PKVIEQAIKDGIPLSVIEAAQQSPVYKMAMEW 337
>pdb|1XGP|B Chain B, Structure For Antibody Hyhel-63 Y33a Mutant Complexed With
Hen Egg Lysozyme
Length = 210
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 25/52 (48%)
Query: 154 VEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEY 205
V+ +E GP++V+ ++ + V G S W + GN++ ++ Y
Sbjct: 2 VQLQESGPSLVKPSQTLSLTCSVTGDSVTSDAWSWIRKFPGNKLEYMGYISY 53
>pdb|1XGQ|B Chain B, Structure For Antibody Hyhel-63 Y33v Mutant Complexed With
Hen Egg Lysozyme
Length = 210
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 25/52 (48%)
Query: 154 VEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEY 205
V+ +E GP++V+ ++ + V G S W + GN++ ++ Y
Sbjct: 2 VQLQESGPSLVKPSQTLSLTCSVTGDSVTSDVWSWIRKFPGNKLEYMGYISY 53
>pdb|1XGR|B Chain B, Structure For Antibody Hyhel-63 Y33i Mutant Complexed With
Hen Egg Lysozyme
Length = 210
Score = 27.3 bits (59), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 25/52 (48%)
Query: 154 VEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEY 205
V+ +E GP++V+ ++ + V G S W + GN++ ++ Y
Sbjct: 2 VQLQESGPSLVKPSQTLSLTCSVTGDSVTSDIWSWIRKFPGNKLEYMGYISY 53
>pdb|1DQJ|B Chain B, Crystal Structure Of The Anti-Lysozyme Antibody Hyhel-63
Complexed With Hen Egg White Lysozyme
pdb|1DQM|H Chain H, Crystal Structure Of Anti-Lysozyme Antibody
pdb|1DQQ|B Chain B, Crystal Structure Of Anti-Lysozyme Antibody Hyhel-63
pdb|1DQQ|D Chain D, Crystal Structure Of Anti-Lysozyme Antibody Hyhel-63
pdb|1NBY|B Chain B, Crystal Structure Of Hyhel-63 Complexed With Hel Mutant
K96a
pdb|1NBZ|B Chain B, Crystal Structure Of Hyhel-63 Complexed With Hel Mutant
K97a
Length = 210
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 25/52 (48%)
Query: 154 VEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEY 205
V+ +E GP++V+ ++ + V G S W + GN++ ++ Y
Sbjct: 2 VQLQESGPSLVKPSQTLSLTCSVTGDSVTSDYWSWIRKFPGNKLEYMGYISY 53
>pdb|1XGT|B Chain B, Structure For Antibody Hyhel-63 Y33l Mutant Complexed With
Hen Egg Lysozyme
Length = 210
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 25/52 (48%)
Query: 154 VEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEY 205
V+ +E GP++V+ ++ + V G S W + GN++ ++ Y
Sbjct: 2 VQLQESGPSLVKPSQTLSLTCSVTGDSVTSDLWSWIRKFPGNKLEYMGYISY 53
>pdb|3GKZ|A Chain A, Crystal Structures Of A Therapeutic Single Chain Antibody
In Complex Methamphetamine
pdb|3GM0|A Chain A, Anti-Methamphetamine Single Chain Fv In Complex With Mdma
Length = 257
Score = 26.9 bits (58), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 25/52 (48%)
Query: 154 VEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEY 205
V+ +E GP++V+ ++ + V G S W + GN++ ++ Y
Sbjct: 10 VQLQESGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISY 61
>pdb|1XGU|B Chain B, Structure For Antibody Hyhel-63 Y33f Mutant Complexed With
Hen Egg Lysozyme
Length = 210
Score = 26.9 bits (58), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 25/52 (48%)
Query: 154 VEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEY 205
V+ +E GP++V+ ++ + V G S W + GN++ ++ Y
Sbjct: 2 VQLQESGPSLVKPSQTLSLTCSVTGDSVTSDFWSWIRKFPGNKLEYMGYISY 53
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,128,601
Number of Sequences: 62578
Number of extensions: 277569
Number of successful extensions: 628
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 604
Number of HSP's gapped (non-prelim): 26
length of query: 241
length of database: 14,973,337
effective HSP length: 96
effective length of query: 145
effective length of database: 8,965,849
effective search space: 1300048105
effective search space used: 1300048105
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)