BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026225
(241 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZB11|GALR_STRTR HTH-type transcriptional regulator GalR OS=Streptococcus
thermophilus GN=galR PE=3 SV=1
Length = 331
Score = 35.0 bits (79), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 27 PPIKSKLPNAINSATNGSDHNKCNNPGINVGEEKSNDGQKLVSSGR 72
P + + N++ SA CNN G+ +G+EK+ D +++S R
Sbjct: 150 PCVTTDFENSVQSALCYLKEQGCNNIGLLIGQEKTTDATEIISDPR 195
>sp|P95192|Y3134_MYCTU Universal stress protein Rv3134c/MT3220 OS=Mycobacterium
tuberculosis GN=Rv3134c PE=2 SV=1
Length = 268
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
Query: 71 GRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGY 130
R +++ +D S A A W++ V + LVYVI PS A E G Q A R
Sbjct: 7 ARAVVVGIDGSRAATHAALWAVDEAVNRDIPLRLVYVIDPSQLSAAG--EGGGQSAARAA 64
Query: 131 EFVHSLKNMCQQKRPEVQFEVAVVEGK 157
+H + V+ E V+ G+
Sbjct: 65 --LHDASRKVEATGQPVKIETEVLCGR 89
>sp|P87132|YFK5_SCHPO Uncharacterized protein C167.05 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC167.05 PE=1 SV=2
Length = 601
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/165 (19%), Positives = 74/165 (44%), Gaps = 13/165 (7%)
Query: 63 DGQKLVSSGRK---IMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSN-NKQATG 118
D Q SS ++ + +D S+E+ A +W++ +++ D +++V VI+ + + +A
Sbjct: 419 DFQTAASSSKRNCTYFLTLDLSSESLHAAEWAVGILLRNGDTLIIVDVIECDDPSARAVK 478
Query: 119 EESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEVAVVEGKEKGPAIVEEARKQGVALLVLG 178
+ ++ + + + + EV+ + V+ ++ I+E +L+V+G
Sbjct: 479 DRMESEQLETLEKITKYILKLLSKTVLEVEVNIEVIHHEKAKHLIIEMIDYIEPSLVVMG 538
Query: 179 QKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRKSKK 223
+ RS + + GSF Y + + + R+K KK
Sbjct: 539 SRGRSHLKGVLL---------GSFSNYLVNKSSVPVMVARKKLKK 574
>sp|Q8NUM4|MQO2_STAAW Probable malate:quinone oxidoreductase 2 OS=Staphylococcus aureus
(strain MW2) GN=mqo2 PE=3 SV=1
Length = 498
Score = 32.3 bits (72), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 27 PPIKSKLPNAINSATNGSDHNKCNNPGINVGEEKSNDGQKLVSSGRKIMIVVDSSNEAKG 86
P IK I + +H + P E N+ +L ++G+++ ++ D+ KG
Sbjct: 357 PLIKYSFDQVIMTKEGCMNHLRTFYP------EARNEDWQLYTAGKRVQVIKDTPEHGKG 410
Query: 87 ALQWSLTHTVQSQDKVVLVYV 107
+Q+ T V SQD V+ +
Sbjct: 411 FIQFG-TEVVNSQDHTVIALL 430
>sp|Q57951|Y531_METJA Universal stress protein MJ0531 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0531 PE=3 SV=1
Length = 170
Score = 32.3 bits (72), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 70/158 (44%), Gaps = 20/158 (12%)
Query: 72 RKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIK--PSNNKQATG--EESGKQRAP 127
+KI+I D S+ + A + ++ + +V +YV+ P A G E +
Sbjct: 27 KKIVIPTDGSDVSLEAAKHAINIAKEFDAEVYAIYVVDVSPFVGLPAEGSWELISELLKE 86
Query: 128 RGYEFVHSLKNMCQQKRPEVQFEVAVVEGKEKGPA--IVEEARKQGVALLVLGQKKRSTT 185
G E + +K M ++ ++ E+ E PA IVE A K+ L+V+G ++
Sbjct: 87 EGQEALKKVKKMAEEWGVKIHTEML-----EGVPANEIVEFAEKKKADLIVMGTTGKTGL 141
Query: 186 WRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRKSKK 223
R+ + GS E I+NA C + V++ K+
Sbjct: 142 ERILL---------GSVAERVIKNAHCPVLVVKKPKKE 170
>sp|Q6G669|MQO2_STAAS Probable malate:quinone oxidoreductase 2 OS=Staphylococcus aureus
(strain MSSA476) GN=mqo PE=3 SV=1
Length = 498
Score = 32.3 bits (72), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 27 PPIKSKLPNAINSATNGSDHNKCNNPGINVGEEKSNDGQKLVSSGRKIMIVVDSSNEAKG 86
P IK I + +H + P E N+ +L ++G+++ ++ D+ KG
Sbjct: 357 PLIKYSFDQVIMTKEGCMNHLRTFYP------EARNEDWQLYTAGKRVQVIKDTPEHGKG 410
Query: 87 ALQWSLTHTVQSQDKVVLVYV 107
+Q+ T V SQD V+ +
Sbjct: 411 FIQFG-TEVVNSQDHTVIALL 430
>sp|Q6GDJ6|MQO2_STAAR Probable malate:quinone oxidoreductase 2 OS=Staphylococcus aureus
(strain MRSA252) GN=mqo2 PE=3 SV=1
Length = 498
Score = 32.3 bits (72), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 27 PPIKSKLPNAINSATNGSDHNKCNNPGINVGEEKSNDGQKLVSSGRKIMIVVDSSNEAKG 86
P IK I + +H + P E N+ +L ++G+++ ++ D+ KG
Sbjct: 357 PLIKYSFDQVIMTKEGCMNHLRTFYP------EARNEDWQLYTAGKRVQVIKDTPEHGKG 410
Query: 87 ALQWSLTHTVQSQDKVVLVYV 107
+Q+ T V SQD V+ +
Sbjct: 411 FIQFG-TEVVNSQDHTVIALL 430
>sp|P99115|MQO2_STAAN Probable malate:quinone oxidoreductase 2 OS=Staphylococcus aureus
(strain N315) GN=mqo2 PE=1 SV=1
Length = 498
Score = 32.3 bits (72), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 27 PPIKSKLPNAINSATNGSDHNKCNNPGINVGEEKSNDGQKLVSSGRKIMIVVDSSNEAKG 86
P IK I + +H + P E N+ +L ++G+++ ++ D+ KG
Sbjct: 357 PLIKYSFDQVIMTKEGCMNHLRTFYP------EARNEDWQLYTAGKRVQVIKDTPEHGKG 410
Query: 87 ALQWSLTHTVQSQDKVVLVYV 107
+Q+ T V SQD V+ +
Sbjct: 411 FIQFG-TEVVNSQDHTVIALL 430
>sp|P65424|MQO2_STAAM Probable malate:quinone oxidoreductase 2 OS=Staphylococcus aureus
(strain Mu50 / ATCC 700699) GN=mqo2 PE=1 SV=1
Length = 498
Score = 32.3 bits (72), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 27 PPIKSKLPNAINSATNGSDHNKCNNPGINVGEEKSNDGQKLVSSGRKIMIVVDSSNEAKG 86
P IK I + +H + P E N+ +L ++G+++ ++ D+ KG
Sbjct: 357 PLIKYSFDQVIMTKEGCMNHLRTFYP------EARNEDWQLYTAGKRVQVIKDTPEHGKG 410
Query: 87 ALQWSLTHTVQSQDKVVLVYV 107
+Q+ T V SQD V+ +
Sbjct: 411 FIQFG-TEVVNSQDHTVIALL 430
>sp|Q5HCU5|MQO2_STAAC Probable malate:quinone oxidoreductase 2 OS=Staphylococcus aureus
(strain COL) GN=mqo2 PE=3 SV=1
Length = 498
Score = 32.3 bits (72), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 27 PPIKSKLPNAINSATNGSDHNKCNNPGINVGEEKSNDGQKLVSSGRKIMIVVDSSNEAKG 86
P IK I + +H + P E N+ +L ++G+++ ++ D+ KG
Sbjct: 357 PLIKYSFDQVIMTKEGCMNHLRTFYP------EARNEDWQLYTAGKRVQVIKDTPEHGKG 410
Query: 87 ALQWSLTHTVQSQDKVVLVYV 107
+Q+ T V SQD V+ +
Sbjct: 411 FIQFG-TEVVNSQDHTVIALL 430
>sp|P19318|NARY_ECOLI Respiratory nitrate reductase 2 beta chain OS=Escherichia coli
(strain K12) GN=narY PE=1 SV=2
Length = 514
Score = 31.2 bits (69), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 161 PAIVEEARKQGVALLVLGQKKRSTTWRLFMMW 192
P+++EEA KQG+ V+ +RS +++ M W
Sbjct: 305 PSVIEEALKQGIPQNVIDAAQRSPVYKMAMDW 336
>sp|Q86V15|CASZ1_HUMAN Zinc finger protein castor homolog 1 OS=Homo sapiens GN=CASZ1 PE=1
SV=4
Length = 1759
Score = 30.8 bits (68), Expect = 9.5, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 8/99 (8%)
Query: 98 SQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEVAVVEGK 157
SQD+ + + V +PSN ES P + SL N Q P + + +
Sbjct: 926 SQDRSLDLTVKEPSN-------ESNGHAVPANSSLLSSLMNKMSQGNPGLGSLLNIKAEA 978
Query: 158 EKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNR 196
E PA E + G A+ L Q+K + W++++ G +
Sbjct: 979 EGSPA-AEPSPFLGKAVKALVQEKLAEPWKVYLRRFGTK 1016
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,252,062
Number of Sequences: 539616
Number of extensions: 3644027
Number of successful extensions: 9153
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 9149
Number of HSP's gapped (non-prelim): 26
length of query: 241
length of database: 191,569,459
effective HSP length: 114
effective length of query: 127
effective length of database: 130,053,235
effective search space: 16516760845
effective search space used: 16516760845
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)