Query 026225
Match_columns 241
No_of_seqs 149 out of 1815
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 05:17:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026225.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026225hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01989 STK_N The N-terminal d 99.9 1.4E-23 3.1E-28 165.4 15.1 137 73-220 1-146 (146)
2 PRK15456 universal stress prot 99.9 1.4E-23 3E-28 165.2 14.9 135 70-218 1-142 (142)
3 PRK15005 universal stress prot 99.9 3.8E-23 8.2E-28 162.5 15.1 136 70-218 1-144 (144)
4 PRK09982 universal stress prot 99.9 1.4E-22 3.1E-27 159.8 13.9 135 70-221 2-141 (142)
5 PF00582 Usp: Universal stress 99.9 9.5E-22 2.1E-26 150.9 11.1 138 70-218 1-140 (140)
6 PRK15118 universal stress glob 99.9 4.2E-21 9.2E-26 151.1 14.0 133 70-220 2-140 (144)
7 cd01988 Na_H_Antiporter_C The 99.8 4.4E-20 9.6E-25 142.2 15.3 132 73-218 1-132 (132)
8 PRK10116 universal stress prot 99.8 4.3E-20 9.4E-25 144.8 15.1 137 70-220 2-140 (142)
9 cd01987 USP_OKCHK USP domain i 99.8 7.5E-20 1.6E-24 140.2 14.1 123 73-218 1-124 (124)
10 PRK11175 universal stress prot 99.8 2.4E-19 5.3E-24 157.7 16.2 151 70-232 2-160 (305)
11 cd00293 USP_Like Usp: Universa 99.8 1.3E-17 2.9E-22 126.4 15.1 130 73-217 1-130 (130)
12 PRK11175 universal stress prot 99.8 4.8E-18 1E-22 149.4 12.2 137 70-221 151-302 (305)
13 COG0589 UspA Universal stress 99.7 8.7E-17 1.9E-21 126.2 15.8 141 69-220 3-153 (154)
14 PRK12652 putative monovalent c 99.4 3.1E-12 6.7E-17 115.1 15.4 133 69-218 3-150 (357)
15 COG2205 KdpD Osmosensitive K+ 99.2 8.4E-10 1.8E-14 106.3 15.0 131 69-222 246-377 (890)
16 PRK10490 sensor protein KdpD; 99.1 1.3E-09 2.8E-14 109.3 15.4 127 70-221 249-376 (895)
17 cd01984 AANH_like Adenine nucl 98.3 2.3E-06 5E-11 61.2 7.0 84 74-216 1-85 (86)
18 PLN03159 cation/H(+) antiporte 97.4 0.0027 5.8E-08 63.7 12.6 147 71-221 458-617 (832)
19 TIGR02432 lysidine_TilS_N tRNA 97.0 0.017 3.7E-07 47.1 11.9 101 73-189 1-117 (189)
20 PF01171 ATP_bind_3: PP-loop f 97.0 0.0076 1.6E-07 49.2 9.5 107 73-195 1-120 (182)
21 cd01992 PP-ATPase N-terminal d 96.2 0.12 2.5E-06 41.9 11.6 101 73-189 1-114 (185)
22 PLN03159 cation/H(+) antiporte 95.8 0.27 5.8E-06 49.6 14.2 148 70-221 629-796 (832)
23 cd01993 Alpha_ANH_like_II This 94.8 0.34 7.3E-06 39.0 9.7 101 73-189 1-124 (185)
24 COG0037 MesJ tRNA(Ile)-lysidin 94.4 0.6 1.3E-05 40.7 11.0 102 71-190 21-139 (298)
25 PRK10660 tilS tRNA(Ile)-lysidi 93.6 1 2.2E-05 42.1 11.3 105 70-190 14-129 (436)
26 PRK10696 tRNA 2-thiocytidine b 93.2 1.6 3.5E-05 37.6 11.3 102 69-189 27-149 (258)
27 TIGR00591 phr2 photolyase PhrI 91.3 3.3 7.2E-05 38.7 11.7 96 74-180 25-122 (454)
28 PRK12342 hypothetical protein; 91.1 2.3 5E-05 36.8 9.6 103 80-217 33-142 (254)
29 PF01012 ETF: Electron transfe 91.0 4.4 9.6E-05 32.1 10.7 89 73-182 1-101 (164)
30 COG2086 FixA Electron transfer 89.6 2.2 4.9E-05 37.0 8.3 117 80-232 35-160 (260)
31 PF00875 DNA_photolyase: DNA p 89.5 2.7 5.9E-05 33.4 8.3 113 85-220 14-126 (165)
32 COG0041 PurE Phosphoribosylcar 88.6 4.5 9.7E-05 32.3 8.5 64 146-226 29-95 (162)
33 TIGR00268 conserved hypothetic 88.0 5.5 0.00012 34.2 9.7 89 71-181 12-117 (252)
34 PRK03359 putative electron tra 87.4 5.5 0.00012 34.5 9.2 104 80-217 34-145 (256)
35 TIGR01162 purE phosphoribosyla 87.0 8.7 0.00019 30.8 9.4 73 133-224 14-89 (156)
36 PRK05253 sulfate adenylyltrans 85.7 8.4 0.00018 34.2 9.7 96 70-183 26-139 (301)
37 PRK13820 argininosuccinate syn 85.5 11 0.00024 34.8 10.6 91 70-182 1-120 (394)
38 cd01985 ETF The electron trans 85.4 18 0.00038 29.1 11.6 79 80-182 17-102 (181)
39 PF00731 AIRC: AIR carboxylase 85.0 7.5 0.00016 30.9 8.2 73 134-225 17-92 (150)
40 PRK07313 phosphopantothenoylcy 84.1 7.3 0.00016 31.9 8.0 34 71-105 1-34 (182)
41 TIGR02765 crypto_DASH cryptoch 82.3 20 0.00043 33.1 11.2 94 79-181 10-106 (429)
42 TIGR02852 spore_dpaB dipicolin 81.5 11 0.00023 31.2 8.0 34 72-106 1-35 (187)
43 cd01995 ExsB ExsB is a transcr 81.2 19 0.00041 28.4 9.4 85 73-182 1-87 (169)
44 PLN00200 argininosuccinate syn 80.9 46 0.001 30.8 12.8 91 70-182 4-124 (404)
45 cd01713 PAPS_reductase This do 79.9 25 0.00055 27.1 10.5 99 73-190 1-124 (173)
46 TIGR03556 photolyase_8HDF deox 79.8 9 0.0002 36.1 8.1 86 83-180 14-99 (471)
47 cd01990 Alpha_ANH_like_I This 79.7 19 0.00042 29.4 9.2 88 74-182 1-106 (202)
48 TIGR02113 coaC_strep phosphopa 78.3 16 0.00036 29.7 8.2 33 72-105 1-33 (177)
49 cd01712 ThiI ThiI is required 78.3 33 0.00071 27.4 11.4 35 73-111 1-35 (177)
50 cd06533 Glyco_transf_WecG_TagA 78.2 13 0.00028 30.0 7.5 70 133-217 59-130 (171)
51 PF02601 Exonuc_VII_L: Exonucl 77.3 11 0.00024 33.3 7.5 74 135-217 30-113 (319)
52 TIGR00521 coaBC_dfp phosphopan 77.3 40 0.00086 31.1 11.2 117 71-220 3-121 (390)
53 PRK05579 bifunctional phosphop 77.3 37 0.0008 31.4 11.1 115 71-218 6-123 (399)
54 PRK13982 bifunctional SbtC-lik 77.3 29 0.00062 32.9 10.4 120 70-222 69-191 (475)
55 PF02568 ThiI: Thiamine biosyn 77.1 24 0.00051 29.4 8.9 92 72-179 4-116 (197)
56 TIGR00342 thiazole biosynthesi 76.3 61 0.0013 29.5 13.5 37 70-110 171-207 (371)
57 cd01994 Alpha_ANH_like_IV This 76.2 24 0.00053 29.0 8.8 93 73-182 1-99 (194)
58 PRK14665 mnmA tRNA-specific 2- 75.3 65 0.0014 29.3 12.0 93 70-182 4-124 (360)
59 PF12683 DUF3798: Protein of u 75.1 8.1 0.00017 33.7 5.7 93 73-182 4-97 (275)
60 KOG1650 Predicted K+/H+-antipo 74.4 18 0.00038 36.5 8.7 145 70-220 613-765 (769)
61 PF03808 Glyco_tran_WecB: Glyc 72.9 12 0.00025 30.2 6.0 70 133-217 61-132 (172)
62 cd01986 Alpha_ANH_like Adenine 72.0 34 0.00074 24.6 8.2 79 74-189 1-79 (103)
63 PRK12563 sulfate adenylyltrans 71.4 51 0.0011 29.5 10.0 94 71-182 37-148 (312)
64 TIGR00032 argG argininosuccina 70.2 87 0.0019 28.9 11.6 34 73-110 1-34 (394)
65 PRK00109 Holliday junction res 69.5 11 0.00024 29.4 4.9 51 160-220 43-98 (138)
66 TIGR00696 wecB_tagA_cpsF bacte 68.4 21 0.00045 29.1 6.5 47 132-180 60-109 (177)
67 PRK00286 xseA exodeoxyribonucl 68.3 25 0.00054 32.7 7.8 76 133-217 149-230 (438)
68 COG1606 ATP-utilizing enzymes 67.9 83 0.0018 27.4 10.6 89 72-181 18-123 (269)
69 PF00448 SRP54: SRP54-type pro 67.6 68 0.0015 26.3 10.5 96 74-190 5-102 (196)
70 TIGR00289 conserved hypothetic 67.5 76 0.0016 26.9 10.5 91 73-180 2-94 (222)
71 TIGR02039 CysD sulfate adenyly 67.0 92 0.002 27.6 11.2 94 71-182 19-130 (294)
72 COG0299 PurN Folate-dependent 66.7 75 0.0016 26.5 10.0 125 73-222 2-144 (200)
73 TIGR00250 RNAse_H_YqgF RNAse H 66.4 25 0.00053 27.1 6.2 52 159-220 36-92 (130)
74 TIGR00884 guaA_Cterm GMP synth 65.6 99 0.0022 27.5 10.8 37 72-111 17-53 (311)
75 PF02844 GARS_N: Phosphoribosy 63.2 7.3 0.00016 28.8 2.6 21 161-181 52-72 (100)
76 COG0036 Rpe Pentose-5-phosphat 62.8 94 0.002 26.4 9.4 48 128-180 152-199 (220)
77 cd01715 ETF_alpha The electron 62.7 75 0.0016 25.1 9.6 25 159-183 71-95 (168)
78 cd01714 ETF_beta The electron 61.9 56 0.0012 27.0 8.0 84 76-182 29-119 (202)
79 PRK00919 GMP synthase subunit 61.3 42 0.0009 29.9 7.5 37 72-111 22-58 (307)
80 PRK00143 mnmA tRNA-specific 2- 61.0 96 0.0021 28.0 10.0 99 72-182 1-127 (346)
81 COG1570 XseA Exonuclease VII, 60.5 43 0.00092 31.4 7.6 77 132-216 148-230 (440)
82 TIGR00930 2a30 K-Cl cotranspor 59.4 1.4E+02 0.003 31.0 11.8 124 72-220 576-710 (953)
83 TIGR00237 xseA exodeoxyribonuc 58.9 45 0.00098 31.1 7.7 75 134-217 144-225 (432)
84 TIGR00421 ubiX_pad polyprenyl 58.6 74 0.0016 25.9 8.1 32 73-105 1-32 (181)
85 PRK00074 guaA GMP synthase; Re 58.5 1.1E+02 0.0024 29.2 10.4 37 71-110 215-251 (511)
86 PLN02948 phosphoribosylaminoim 58.1 1.9E+02 0.004 28.2 13.4 60 146-222 437-499 (577)
87 cd01997 GMP_synthase_C The C-t 58.0 1.2E+02 0.0025 26.9 9.8 35 73-110 1-35 (295)
88 PF03652 UPF0081: Uncharacteri 57.6 40 0.00088 26.1 6.1 63 149-221 28-97 (135)
89 PRK00509 argininosuccinate syn 57.5 1.6E+02 0.0035 27.3 12.1 37 71-110 2-38 (399)
90 PRK10674 deoxyribodipyrimidine 57.2 94 0.002 29.3 9.6 91 79-180 11-105 (472)
91 PRK14057 epimerase; Provisiona 55.8 1.4E+02 0.003 25.9 11.6 49 128-180 175-223 (254)
92 PRK04527 argininosuccinate syn 54.6 1.8E+02 0.0039 27.0 11.3 36 71-110 2-37 (400)
93 COG1927 Mtd Coenzyme F420-depe 54.0 54 0.0012 27.7 6.5 58 160-230 49-115 (277)
94 PF13167 GTP-bdg_N: GTP-bindin 53.6 60 0.0013 23.7 6.0 51 128-180 5-66 (95)
95 PRK10550 tRNA-dihydrouridine s 53.6 1.6E+02 0.0035 26.1 11.2 77 126-217 116-200 (312)
96 PRK08745 ribulose-phosphate 3- 53.5 1.4E+02 0.003 25.3 11.1 93 70-180 109-201 (223)
97 PRK09722 allulose-6-phosphate 52.6 1.5E+02 0.0032 25.3 11.2 93 70-180 107-199 (229)
98 PRK10867 signal recognition pa 52.0 2.1E+02 0.0045 26.8 10.9 91 78-188 108-200 (433)
99 COG1066 Sms Predicted ATP-depe 50.6 1.4E+02 0.0031 27.9 9.2 86 70-181 92-178 (456)
100 TIGR00290 MJ0570_dom MJ0570-re 50.4 1.6E+02 0.0034 25.0 10.0 92 73-181 2-95 (223)
101 COG2102 Predicted ATPases of P 49.9 1.6E+02 0.0035 25.0 9.3 91 73-180 2-95 (223)
102 PF07355 GRDB: Glycine/sarcosi 48.0 77 0.0017 28.8 6.9 78 146-232 47-138 (349)
103 PRK08576 hypothetical protein; 47.3 2E+02 0.0044 27.0 9.9 87 73-181 236-340 (438)
104 PRK13010 purU formyltetrahydro 47.0 2E+02 0.0043 25.4 9.4 97 70-193 92-191 (289)
105 PF01902 ATP_bind_4: ATP-bindi 46.7 1.8E+02 0.0038 24.5 9.9 91 73-180 2-94 (218)
106 PRK12569 hypothetical protein; 46.5 1.9E+02 0.0042 24.9 9.4 126 85-232 46-184 (245)
107 COG1036 Archaeal flavoproteins 46.4 45 0.00098 27.0 4.7 128 70-231 7-143 (187)
108 PRK14664 tRNA-specific 2-thiou 46.2 2.3E+02 0.0051 25.8 11.4 87 71-182 5-119 (362)
109 cd06361 PBP1_GPC6A_like Ligand 46.0 2.4E+02 0.0051 25.8 11.1 99 70-182 171-269 (403)
110 TIGR00646 MG010 DNA primase-re 45.2 1.2E+02 0.0027 25.6 7.4 36 71-106 154-189 (218)
111 PRK11914 diacylglycerol kinase 44.9 1.1E+02 0.0025 26.6 7.7 71 133-221 28-98 (306)
112 TIGR00655 PurU formyltetrahydr 44.8 1.9E+02 0.004 25.4 8.8 94 70-190 83-179 (280)
113 COG0541 Ffh Signal recognition 43.5 2.9E+02 0.0062 26.1 10.9 96 74-190 104-201 (451)
114 cd01998 tRNA_Me_trans tRNA met 42.7 2.5E+02 0.0055 25.2 10.1 33 73-109 1-33 (349)
115 PF04459 DUF512: Protein of un 42.6 1.2E+02 0.0027 25.2 7.1 82 129-220 108-202 (204)
116 TIGR02855 spore_yabG sporulati 42.5 97 0.0021 27.2 6.5 46 134-181 118-163 (283)
117 PRK08091 ribulose-phosphate 3- 42.3 2.2E+02 0.0047 24.3 11.0 48 129-180 162-209 (228)
118 PF02887 PK_C: Pyruvate kinase 41.4 62 0.0013 24.0 4.7 43 161-221 6-49 (117)
119 cd06375 PBP1_mGluR_groupII Lig 41.3 3E+02 0.0064 25.6 10.4 21 162-182 247-267 (458)
120 PRK00994 F420-dependent methyl 40.4 1.2E+02 0.0026 26.2 6.6 56 163-231 52-116 (277)
121 cd03364 TOPRIM_DnaG_primases T 39.7 92 0.002 21.2 5.1 34 71-104 43-76 (79)
122 TIGR03573 WbuX N-acetyl sugar 39.7 2.8E+02 0.0061 24.9 9.9 34 73-109 61-94 (343)
123 PRK05406 LamB/YcsF family prot 39.6 2.5E+02 0.0054 24.2 9.0 124 85-230 43-179 (246)
124 TIGR02766 crypt_chrom_pln cryp 39.3 3.3E+02 0.0071 25.5 11.7 85 84-180 12-96 (475)
125 PF05582 Peptidase_U57: YabG p 39.2 93 0.002 27.4 5.9 45 134-180 119-163 (287)
126 COG0788 PurU Formyltetrahydrof 39.0 2.6E+02 0.0057 24.6 8.5 36 146-181 138-176 (287)
127 COG0415 PhrB Deoxyribodipyrimi 39.0 3.5E+02 0.0075 25.7 11.1 120 79-222 11-130 (461)
128 PRK06027 purU formyltetrahydro 37.8 2.8E+02 0.0061 24.3 10.6 98 69-193 87-187 (286)
129 TIGR00959 ffh signal recogniti 37.8 3.4E+02 0.0075 25.3 10.8 93 75-188 104-199 (428)
130 PRK01269 tRNA s(4)U8 sulfurtra 37.7 3.6E+02 0.0078 25.5 11.6 37 70-110 176-212 (482)
131 cd08550 GlyDH-like Glycerol_de 37.4 3E+02 0.0065 24.6 9.7 69 133-220 38-110 (349)
132 TIGR02699 archaeo_AfpA archaeo 37.4 2.2E+02 0.0049 23.1 9.5 33 73-105 1-34 (174)
133 PF03746 LamB_YcsF: LamB/YcsF 36.7 2.8E+02 0.006 23.9 10.8 138 73-232 29-179 (242)
134 PRK15424 propionate catabolism 36.4 90 0.0019 30.1 6.0 66 132-222 25-94 (538)
135 PRK05920 aromatic acid decarbo 36.3 83 0.0018 26.3 5.1 36 70-106 2-37 (204)
136 PRK08349 hypothetical protein; 36.3 2.3E+02 0.0051 23.0 12.1 34 72-109 1-34 (198)
137 PRK09590 celB cellobiose phosp 35.7 96 0.0021 22.9 4.8 69 133-222 18-86 (104)
138 PF14639 YqgF: Holliday-juncti 35.6 85 0.0018 24.8 4.8 20 162-181 54-73 (150)
139 PRK00861 putative lipid kinase 35.6 2.5E+02 0.0055 24.3 8.4 59 147-221 33-91 (300)
140 cd03557 L-arabinose_isomerase 34.8 2.6E+02 0.0057 26.6 8.7 84 117-220 13-100 (484)
141 PRK10415 tRNA-dihydrouridine s 34.7 3.3E+02 0.0071 24.2 9.4 113 90-217 81-200 (321)
142 PRK06029 3-octaprenyl-4-hydrox 34.1 85 0.0018 25.7 4.7 34 72-105 2-35 (185)
143 PRK13054 lipid kinase; Reviewe 34.0 3.2E+02 0.0068 23.8 9.3 61 146-221 31-94 (300)
144 TIGR02329 propionate_PrpR prop 33.2 1.8E+02 0.0039 27.9 7.5 35 167-222 50-84 (526)
145 COG0452 Dfp Phosphopantothenoy 33.2 2.9E+02 0.0062 25.5 8.5 120 71-222 4-124 (392)
146 KOG1014 17 beta-hydroxysteroid 33.1 2E+02 0.0042 25.8 7.0 80 73-177 50-132 (312)
147 PF02571 CbiJ: Precorrin-6x re 33.0 2.3E+02 0.005 24.3 7.4 49 162-225 185-233 (249)
148 PRK12858 tagatose 1,6-diphosph 32.8 3.7E+02 0.0081 24.3 9.5 135 73-220 85-250 (340)
149 PRK04148 hypothetical protein; 32.8 1.8E+02 0.0039 22.6 6.1 37 146-182 77-113 (134)
150 cd07044 CofD_YvcK Family of Co 32.5 1.4E+02 0.0031 26.6 6.2 64 146-221 148-216 (309)
151 PRK14561 hypothetical protein; 32.5 2.8E+02 0.006 22.6 9.6 85 73-183 2-106 (194)
152 PF13662 Toprim_4: Toprim doma 32.4 78 0.0017 21.7 3.7 33 71-103 46-78 (81)
153 TIGR00420 trmU tRNA (5-methyla 32.4 3.8E+02 0.0082 24.2 11.3 33 72-108 1-33 (352)
154 cd00578 L-fuc_L-ara-isomerases 31.9 1.4E+02 0.0031 27.7 6.5 45 162-221 54-98 (452)
155 PRK13011 formyltetrahydrofolat 31.8 3.5E+02 0.0077 23.7 10.4 126 70-222 88-230 (286)
156 PF02310 B12-binding: B12 bind 31.8 2E+02 0.0043 20.8 9.0 48 136-187 20-67 (121)
157 COG0615 TagD Cytidylyltransfer 31.7 88 0.0019 24.6 4.2 34 147-182 63-97 (140)
158 PRK09213 pur operon repressor; 31.6 2.9E+02 0.0063 24.1 7.9 81 126-223 77-165 (271)
159 COG1922 WecG Teichoic acid bio 31.6 1.5E+02 0.0033 25.6 6.0 49 131-179 119-169 (253)
160 PF02441 Flavoprotein: Flavopr 31.4 76 0.0016 23.9 3.8 113 72-220 1-119 (129)
161 cd05565 PTS_IIB_lactose PTS_II 30.8 1.3E+02 0.0027 22.1 4.7 65 133-220 17-81 (99)
162 KOG2594 Uncharacterized conser 30.8 4.3E+02 0.0093 24.3 11.0 27 66-92 57-83 (396)
163 KOG1467 Translation initiation 30.6 2.9E+02 0.0062 26.5 7.9 120 72-230 360-480 (556)
164 PLN02285 methionyl-tRNA formyl 30.5 2.4E+02 0.0053 25.3 7.5 44 146-189 68-111 (334)
165 PRK00766 hypothetical protein; 30.5 80 0.0017 26.2 4.0 59 146-217 42-104 (194)
166 PF00834 Ribul_P_3_epim: Ribul 30.4 1.1E+02 0.0024 25.3 4.9 49 127-179 147-195 (201)
167 COG1597 LCB5 Sphingosine kinas 30.0 1.8E+02 0.004 25.6 6.5 55 128-185 17-71 (301)
168 TIGR01917 gly_red_sel_B glycin 29.9 94 0.002 29.0 4.7 79 146-233 43-135 (431)
169 TIGR01917 gly_red_sel_B glycin 29.9 1E+02 0.0022 28.8 4.9 47 159-217 324-370 (431)
170 TIGR01918 various_sel_PB selen 29.8 95 0.0021 29.0 4.7 78 146-232 43-134 (431)
171 TIGR00364 exsB protein. This p 29.7 3E+02 0.0066 22.2 10.4 33 74-110 1-33 (201)
172 COG0816 Predicted endonuclease 29.7 1.5E+02 0.0032 23.3 5.2 53 159-220 41-97 (141)
173 PF02610 Arabinose_Isome: L-ar 29.3 2.8E+02 0.006 25.4 7.5 86 116-221 18-107 (359)
174 TIGR01743 purR_Bsub pur operon 29.1 3.5E+02 0.0075 23.6 7.9 81 126-223 75-163 (268)
175 cd01029 TOPRIM_primases TOPRIM 29.0 1.7E+02 0.0037 19.5 5.0 34 71-104 43-76 (79)
176 cd06295 PBP1_CelR Ligand bindi 29.0 3.3E+02 0.0072 22.5 8.7 69 132-220 28-96 (275)
177 PRK08883 ribulose-phosphate 3- 28.9 3.5E+02 0.0075 22.7 10.8 46 131-180 152-197 (220)
178 PRK05370 argininosuccinate syn 28.9 5E+02 0.011 24.5 11.2 109 70-186 10-137 (447)
179 cd07186 CofD_like LPPG:FO 2-ph 28.6 2.4E+02 0.0052 25.1 6.9 63 146-220 157-224 (303)
180 PF10087 DUF2325: Uncharacteri 28.4 2.2E+02 0.0048 20.2 7.3 72 133-221 12-85 (97)
181 PF00532 Peripla_BP_1: Peripla 28.3 3.8E+02 0.0082 22.9 9.6 76 128-222 15-90 (279)
182 COG0042 tRNA-dihydrouridine sy 28.2 4.3E+02 0.0094 23.6 9.5 103 74-182 69-176 (323)
183 COG1010 CobJ Precorrin-3B meth 27.6 2.1E+02 0.0046 24.6 6.1 56 170-234 153-210 (249)
184 cd03416 CbiX_SirB_N Sirohydroc 27.4 2.3E+02 0.0049 20.0 7.6 51 128-178 13-64 (101)
185 CHL00076 chlB photochlorophyll 27.3 83 0.0018 30.1 4.1 26 156-182 101-127 (513)
186 PF10236 DAP3: Mitochondrial r 27.3 3E+02 0.0064 24.3 7.4 129 72-221 25-165 (309)
187 TIGR00737 nifR3_yhdG putative 27.2 4.3E+02 0.0094 23.2 10.1 49 127-180 117-169 (319)
188 cd02067 B12-binding B12 bindin 27.1 2.5E+02 0.0055 20.5 8.6 38 146-185 27-64 (119)
189 PRK11070 ssDNA exonuclease Rec 27.1 6E+02 0.013 24.8 10.6 95 70-182 68-162 (575)
190 TIGR01918 various_sel_PB selen 26.9 1.2E+02 0.0026 28.3 4.9 48 159-218 324-371 (431)
191 PRK13606 LPPG:FO 2-phospho-L-l 26.7 2.2E+02 0.0047 25.4 6.3 60 146-219 159-223 (303)
192 PRK03692 putative UDP-N-acetyl 26.7 4.1E+02 0.0088 22.7 9.0 69 132-217 117-188 (243)
193 PF13362 Toprim_3: Toprim doma 26.4 1.7E+02 0.0036 20.6 4.7 39 69-107 39-79 (96)
194 PF01220 DHquinase_II: Dehydro 26.2 2E+02 0.0044 22.5 5.4 58 147-220 41-101 (140)
195 COG1162 Predicted GTPases [Gen 26.1 4.7E+02 0.01 23.3 10.0 141 71-237 81-229 (301)
196 KOG4584 Uncharacterized conser 26.0 1.2E+02 0.0026 27.1 4.4 103 68-182 196-310 (348)
197 TIGR03702 lip_kinase_YegS lipi 25.7 4.4E+02 0.0095 22.8 9.1 41 146-187 27-67 (293)
198 COG0420 SbcD DNA repair exonuc 25.5 1.5E+02 0.0033 26.9 5.3 26 127-156 23-48 (390)
199 PRK10653 D-ribose transporter 25.3 3.9E+02 0.0085 22.6 7.8 75 129-220 41-116 (295)
200 TIGR00715 precor6x_red precorr 25.3 4.2E+02 0.0092 22.8 7.8 43 164-222 190-234 (256)
201 TIGR01283 nifE nitrogenase mol 25.2 5.6E+02 0.012 23.9 11.2 104 71-227 326-430 (456)
202 PRK13337 putative lipid kinase 25.2 4.6E+02 0.0099 22.8 9.9 71 134-221 22-93 (304)
203 cd07187 YvcK_like family of mo 25.0 3E+02 0.0065 24.5 6.9 64 147-222 151-218 (308)
204 cd01972 Nitrogenase_VnfE_like 25.0 1.1E+02 0.0024 28.2 4.5 26 156-182 105-131 (426)
205 KOG1650 Predicted K+/H+-antipo 24.9 6.3E+02 0.014 25.6 9.9 144 71-221 443-601 (769)
206 cd01460 vWA_midasin VWA_Midasi 24.8 4.7E+02 0.01 22.8 11.3 159 59-220 48-244 (266)
207 PRK13015 3-dehydroquinate dehy 24.7 2.3E+02 0.005 22.4 5.4 57 149-220 44-102 (146)
208 TIGR01769 GGGP geranylgeranylg 24.6 3.3E+02 0.0073 22.7 6.8 59 162-231 15-77 (205)
209 COG2100 Predicted Fe-S oxidore 24.5 4.3E+02 0.0094 24.1 7.7 64 145-218 188-262 (414)
210 PRK02929 L-arabinose isomerase 24.4 5.6E+02 0.012 24.5 9.0 43 162-219 59-105 (499)
211 cd01967 Nitrogenase_MoFe_alpha 23.8 1.5E+02 0.0031 27.1 4.9 26 156-182 103-129 (406)
212 TIGR00169 leuB 3-isopropylmala 23.7 2.1E+02 0.0045 26.0 5.8 26 82-107 163-188 (349)
213 PHA02031 putative DnaG-like pr 23.7 2.7E+02 0.0059 24.3 6.2 37 71-107 206-242 (266)
214 PF02878 PGM_PMM_I: Phosphoglu 23.5 1.8E+02 0.0039 22.1 4.7 40 70-109 39-78 (137)
215 TIGR02089 TTC tartrate dehydro 23.4 1.7E+02 0.0038 26.6 5.2 27 82-108 164-190 (352)
216 cd01974 Nitrogenase_MoFe_beta 23.2 6E+02 0.013 23.5 8.9 85 70-180 302-386 (435)
217 COG1058 CinA Predicted nucleot 23.1 4.4E+02 0.0096 22.8 7.4 32 146-178 34-67 (255)
218 cd01996 Alpha_ANH_like_III Thi 23.0 3.4E+02 0.0075 20.6 9.2 34 73-109 3-36 (154)
219 smart00732 YqgFc Likely ribonu 22.9 2.7E+02 0.0058 19.3 5.6 47 162-220 42-93 (99)
220 cd01971 Nitrogenase_VnfN_like 22.7 1.4E+02 0.0031 27.6 4.7 26 156-182 102-127 (427)
221 PRK13055 putative lipid kinase 22.6 5.5E+02 0.012 22.8 9.5 54 131-187 20-74 (334)
222 PRK15411 rcsA colanic acid cap 22.4 3.8E+02 0.0083 21.9 6.8 44 162-220 38-86 (207)
223 PLN00118 isocitrate dehydrogen 22.4 2.3E+02 0.005 26.1 5.7 28 81-108 183-211 (372)
224 KOG0780 Signal recognition par 22.3 4.2E+02 0.0092 24.8 7.3 55 134-190 146-202 (483)
225 TIGR01862 N2-ase-Ialpha nitrog 22.3 5.8E+02 0.013 23.7 8.7 32 70-105 316-347 (443)
226 PRK08194 tartrate dehydrogenas 22.3 1.9E+02 0.0041 26.4 5.2 28 81-108 160-187 (352)
227 COG0284 PyrF Orotidine-5'-phos 22.2 2.3E+02 0.005 24.3 5.5 35 71-110 11-45 (240)
228 PF07302 AroM: AroM protein; 22.2 4.9E+02 0.011 22.1 8.6 57 146-218 149-209 (221)
229 KOG1552 Predicted alpha/beta h 22.2 2.5E+02 0.0055 24.4 5.7 93 119-220 105-201 (258)
230 COG2201 CheB Chemotaxis respon 22.2 5E+02 0.011 23.7 7.8 59 147-220 25-83 (350)
231 PF01261 AP_endonuc_2: Xylose 22.2 3.9E+02 0.0084 20.9 8.1 82 84-173 69-157 (213)
232 cd05564 PTS_IIB_chitobiose_lic 22.2 2.5E+02 0.0054 20.1 5.0 67 133-222 16-82 (96)
233 PRK10117 trehalose-6-phosphate 22.0 6.9E+02 0.015 23.8 9.9 101 71-181 254-361 (474)
234 COG0069 GltB Glutamate synthas 21.9 3.8E+02 0.0082 25.6 7.2 48 129-181 290-337 (485)
235 KOG1135 mRNA cleavage and poly 21.6 8.3E+02 0.018 24.5 11.2 40 173-212 320-371 (764)
236 PF14582 Metallophos_3: Metall 21.4 98 0.0021 26.6 3.0 51 160-232 195-245 (255)
237 COG1697 DNA topoisomerase VI, 21.4 3.5E+02 0.0075 24.7 6.5 65 151-231 186-252 (356)
238 TIGR00175 mito_nad_idh isocitr 21.2 2.4E+02 0.0053 25.4 5.6 27 82-108 145-172 (333)
239 PRK08997 isocitrate dehydrogen 21.1 2.6E+02 0.0057 25.2 5.8 27 82-108 147-174 (334)
240 COG0473 LeuB Isocitrate/isopro 20.9 1.7E+02 0.0038 26.5 4.6 29 81-109 155-184 (348)
241 PRK05395 3-dehydroquinate dehy 20.9 3.1E+02 0.0066 21.7 5.4 58 146-220 43-102 (146)
242 PF01507 PAPS_reduct: Phosphoa 20.8 3.9E+02 0.0085 20.4 9.9 33 73-109 1-33 (174)
243 TIGR01088 aroQ 3-dehydroquinat 20.7 3.4E+02 0.0074 21.3 5.6 57 149-220 42-100 (141)
244 COG0151 PurD Phosphoribosylami 20.6 90 0.002 29.1 2.8 19 161-179 53-71 (428)
245 PRK13057 putative lipid kinase 20.6 3E+02 0.0066 23.7 6.1 70 133-221 15-84 (287)
246 PRK08185 hypothetical protein; 20.6 2.7E+02 0.006 24.4 5.7 65 147-220 13-77 (283)
247 COG0301 ThiI Thiamine biosynth 20.6 6.8E+02 0.015 23.1 10.4 92 71-180 175-288 (383)
248 COG2870 RfaE ADP-heptose synth 20.5 2.2E+02 0.0047 26.7 5.1 61 160-232 130-195 (467)
249 CHL00073 chlN photochlorophyll 20.5 1.6E+02 0.0035 27.8 4.5 26 156-182 113-139 (457)
250 TIGR00619 sbcd exonuclease Sbc 20.5 2.3E+02 0.0051 24.1 5.3 24 130-157 25-48 (253)
251 PRK08384 thiamine biosynthesis 20.4 6.7E+02 0.015 23.0 13.5 35 70-108 179-213 (381)
252 PRK12737 gatY tagatose-bisphos 20.4 3.5E+02 0.0075 23.8 6.3 65 147-220 18-83 (284)
253 PRK12360 4-hydroxy-3-methylbut 20.3 2E+02 0.0043 25.3 4.8 54 135-189 174-228 (281)
254 TIGR00177 molyb_syn molybdenum 20.3 2.8E+02 0.0061 21.3 5.3 32 146-178 40-73 (144)
255 PF00180 Iso_dh: Isocitrate/is 20.2 2.3E+02 0.005 25.6 5.3 78 81-178 159-238 (348)
256 PRK01045 ispH 4-hydroxy-3-meth 20.2 1.8E+02 0.0038 25.9 4.5 55 134-189 172-229 (298)
No 1
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=99.91 E-value=1.4e-23 Score=165.38 Aligned_cols=137 Identities=23% Similarity=0.383 Sum_probs=112.6
Q ss_pred EEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCC------chhhHhhhhHHHHHHHHHHHHHHHhhCCC
Q 026225 73 KIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQAT------GEESGKQRAPRGYEFVHSLKNMCQQKRPE 146 (241)
Q Consensus 73 ~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 146 (241)
+||||+|+|+.+..|++||++++...+++|+++||+++....... .........+.+++.++++.+.+.. .+
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~ 78 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLATKGQTIVLVHVHPPITSIPSSSGKLEVASAYKQEEDKEAKELLLPYRCFCSR--KG 78 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccCCCCcEEEEEeccCcccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhh--cC
Confidence 499999999999999999999999999999999998864322211 1223344455666777777777754 38
Q ss_pred ccEEEEEEcCCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCC-CHHHHHHhcCC--ceEEEEeCC
Q 026225 147 VQFEVAVVEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGG-SFVEYCIQNAD--CMAVAVRRK 220 (241)
Q Consensus 147 v~v~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~G-sv~~~vi~~a~--~pVlvV~~~ 220 (241)
++++..++.|.+..+.|+++|++.++|+||||+++++.+.++++ | |++++|+++++ ||||+|+++
T Consensus 79 ~~~~~~~~~g~~~~~~I~~~a~~~~~dlIV~Gs~g~~~l~~~~~---------gssva~~Vi~~a~~~c~Vlvv~~~ 146 (146)
T cd01989 79 VQCEDVVLEDDDVAKAIVEYVADHGITKLVMGASSDNHFSMKFK---------KSDVASSVLKEAPDFCTVYVVSKG 146 (146)
T ss_pred CeEEEEEEeCCcHHHHHHHHHHHcCCCEEEEeccCCCceeeccc---------CCchhHHHHhcCCCCceEEEEeCc
Confidence 89999999985556699999999999999999999999988887 8 69999999999 999999863
No 2
>PRK15456 universal stress protein UspG; Provisional
Probab=99.91 E-value=1.4e-23 Score=165.23 Aligned_cols=135 Identities=17% Similarity=0.170 Sum_probs=106.9
Q ss_pred CCCEEEEeecCC--HHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCC-----CCchhhHhhhhHHHHHHHHHHHHHHHh
Q 026225 70 SGRKIMIVVDSS--NEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQ-----ATGEESGKQRAPRGYEFVHSLKNMCQQ 142 (241)
Q Consensus 70 ~~~~ILVavD~s--~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~ 142 (241)
|+++||||+|+| +.+..|+++|..+|... ++|+++||+++..... ...+.+.+...+.+++.++++.+.+..
T Consensus 1 m~~~ILv~vD~S~~~~s~~al~~A~~la~~~-~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 79 (142)
T PRK15456 1 MYKTIIMPVDVFEMELSDKAVRHAEFLAQDD-GVIHLLHVLPGSASLSLHRFAADVRRFEEHLQHEAEERLQTMVSHFTI 79 (142)
T ss_pred CCccEEEeccCCchhHHHHHHHHHHHHHhcC-CeEEEEEEecCcccccccccccchhhHHHHHHHHHHHHHHHHHHHhCC
Confidence 689999999998 48999999999999774 6999999998643111 111233344445555556665554432
Q ss_pred hCCCccEEEEEEcCCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEe
Q 026225 143 KRPEVQFEVAVVEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVR 218 (241)
Q Consensus 143 ~~~~v~v~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~ 218 (241)
.+++++..+..|++.. .|++++++.++||||||+++++ +.++++ ||++++|+++++||||+||
T Consensus 80 --~~~~v~~~v~~G~~~~-~I~~~a~~~~~DLIVmG~~g~~-~~~~ll---------GS~a~~v~~~a~~pVLvV~ 142 (142)
T PRK15456 80 --DPSRIKQHVRFGSVRD-EVNELAEELGADVVVIGSRNPS-ISTHLL---------GSNASSVIRHANLPVLVVR 142 (142)
T ss_pred --CCcceEEEEcCCChHH-HHHHHHhhcCCCEEEEcCCCCC-ccceec---------CccHHHHHHcCCCCEEEeC
Confidence 4688999999998765 9999999999999999999986 677788 9999999999999999996
No 3
>PRK15005 universal stress protein F; Provisional
Probab=99.91 E-value=3.8e-23 Score=162.47 Aligned_cols=136 Identities=17% Similarity=0.254 Sum_probs=105.6
Q ss_pred CCCEEEEeecCCHH--HHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCC-----c-hhhHhhhhHHHHHHHHHHHHHHH
Q 026225 70 SGRKIMIVVDSSNE--AKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQAT-----G-EESGKQRAPRGYEFVHSLKNMCQ 141 (241)
Q Consensus 70 ~~~~ILVavD~s~~--s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~-----~-~~~~~~~~~~~~~~l~~~~~~~~ 141 (241)
|+++||||+|+|+. +..|++||.++|...+++|+++||+++....... . ........+.+.+.++++.+.+.
T Consensus 1 m~~~ILv~~D~s~~~~~~~a~~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 80 (144)
T PRK15005 1 MNRTILVPIDISDSELTQRVISHVEAEAKIDDAEVHFLTVIPSLPYYASLGLAYSAELPAMDDLKAEAKSQLEEIIKKFK 80 (144)
T ss_pred CCccEEEecCCCchhHHHHHHHHHHHHHhccCCeEEEEEEEccCcccccccccccccchHHHHHHHHHHHHHHHHHHHhC
Confidence 68999999999987 5799999999999999999999999853311100 0 11112233444445555544443
Q ss_pred hhCCCccEEEEEEcCCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEe
Q 026225 142 QKRPEVQFEVAVVEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVR 218 (241)
Q Consensus 142 ~~~~~v~v~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~ 218 (241)
.++++++..+..|++.. .|+++++++++||||||+++ +.+.++++ ||++++|+++++||||+||
T Consensus 81 --~~~~~~~~~v~~G~p~~-~I~~~a~~~~~DLIV~Gs~~-~~~~~~ll---------GS~a~~vl~~a~cpVlvVr 144 (144)
T PRK15005 81 --LPTDRVHVHVEEGSPKD-RILELAKKIPADMIIIASHR-PDITTYLL---------GSNAAAVVRHAECSVLVVR 144 (144)
T ss_pred --CCCCceEEEEeCCCHHH-HHHHHHHHcCCCEEEEeCCC-CCchheee---------cchHHHHHHhCCCCEEEeC
Confidence 24788899999999765 99999999999999999984 56788888 9999999999999999995
No 4
>PRK09982 universal stress protein UspD; Provisional
Probab=99.89 E-value=1.4e-22 Score=159.83 Aligned_cols=135 Identities=14% Similarity=0.096 Sum_probs=105.2
Q ss_pred CCCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCC-----CCchhhHhhhhHHHHHHHHHHHHHHHhhC
Q 026225 70 SGRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQ-----ATGEESGKQRAPRGYEFVHSLKNMCQQKR 144 (241)
Q Consensus 70 ~~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 144 (241)
|+++||||+|+|+.|..|+++|+++|...+++|+++||+++..... ...+...+...+.+++.++.+...+.
T Consensus 2 ~~k~ILvavD~S~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--- 78 (142)
T PRK09982 2 AYKHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDDGLSELYPGIYFPATEDILQLLKNKSDNKLYKLTKNIQ--- 78 (142)
T ss_pred CceEEEEEecCCcchHHHHHHHHHHHHHhCCeEEEEEEccCcchhchhhhccchHHHHHHHHHHHHHHHHHHHHhcC---
Confidence 5899999999999999999999999999999999999987533111 11122333344444445555444332
Q ss_pred CCccEEEEEEcCCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeCCC
Q 026225 145 PEVQFEVAVVEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRKS 221 (241)
Q Consensus 145 ~~v~v~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~~ 221 (241)
...++..+..|++.. .|+++|++.++||||||++ ++.+.+++ | ++++++++++||||+||...
T Consensus 79 -~~~~~~~v~~G~p~~-~I~~~A~~~~aDLIVmG~~-~~~~~~~~----------~-va~~V~~~s~~pVLvv~~~~ 141 (142)
T PRK09982 79 -WPKTKLRIERGEMPE-TLLEIMQKEQCDLLVCGHH-HSFINRLM----------P-AYRGMINKMSADLLIVPFID 141 (142)
T ss_pred -CCcceEEEEecCHHH-HHHHHHHHcCCCEEEEeCC-hhHHHHHH----------H-HHHHHHhcCCCCEEEecCCC
Confidence 245778888899765 9999999999999999986 78888777 7 99999999999999998654
No 5
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=99.87 E-value=9.5e-22 Score=150.85 Aligned_cols=138 Identities=25% Similarity=0.384 Sum_probs=99.4
Q ss_pred CCCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhh--hhHHHHHHHHHHHHHHHhhCCCc
Q 026225 70 SGRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQ--RAPRGYEFVHSLKNMCQQKRPEV 147 (241)
Q Consensus 70 ~~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~v 147 (241)
|+++||||+|+++.+..+++||+.++...+++|+++||++............... ................... .+.
T Consensus 1 M~~~Ilv~~d~~~~~~~al~~a~~la~~~~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 79 (140)
T PF00582_consen 1 MYKRILVAIDGSEESRRALRFALELAKRSGAEITLLHVIPPPPQYSFSAAEDEESEEEAEEEEQARQAEAEEAEAE-GGI 79 (140)
T ss_dssp -TSEEEEEESSSHHHHHHHHHHHHHHHHHTCEEEEEEEEESCHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTS
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHhhCCeEEEEEeeccccccccccccccccccccchhhhhhhHHHHHHhhh-ccc
Confidence 6899999999999999999999999999999999999999764222111000000 0000000000000111111 245
Q ss_pred cEEEEEEcCCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEe
Q 026225 148 QFEVAVVEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVR 218 (241)
Q Consensus 148 ~v~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~ 218 (241)
.....+..|+ ..+.|++++++.++|+||||+++++.+.++++ ||++++|+++++||||+||
T Consensus 80 ~~~~~~~~~~-~~~~i~~~~~~~~~dliv~G~~~~~~~~~~~~---------gs~~~~l~~~~~~pVlvv~ 140 (140)
T PF00582_consen 80 VIEVVIESGD-VADAIIEFAEEHNADLIVMGSRGRSGLERLLF---------GSVAEKLLRHAPCPVLVVP 140 (140)
T ss_dssp EEEEEEEESS-HHHHHHHHHHHTTCSEEEEESSSTTSTTTSSS---------HHHHHHHHHHTSSEEEEEE
T ss_pred eeEEEEEeec-cchhhhhccccccceeEEEeccCCCCccCCCc---------CCHHHHHHHcCCCCEEEeC
Confidence 5555666666 56699999999999999999999999999888 9999999999999999996
No 6
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=99.87 E-value=4.2e-21 Score=151.15 Aligned_cols=133 Identities=18% Similarity=0.196 Sum_probs=95.8
Q ss_pred CCCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCC-C-C---chhhHhhhhHHHHHHHHHHHHHHHhhC
Q 026225 70 SGRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQ-A-T---GEESGKQRAPRGYEFVHSLKNMCQQKR 144 (241)
Q Consensus 70 ~~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~-~-~---~~~~~~~~~~~~~~~l~~~~~~~~~~~ 144 (241)
++++||||+|+|+.+..|+++|..+|...+++|++|||..+..... . . .+...+...+.. .+.++.....
T Consensus 2 ~~~~ILvavD~S~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~-- 76 (144)
T PRK15118 2 AYKHILIAVDLSPESKVLVEKAVSMARPYNAKVSLIHVDVNYSDLYTGLIDVNLGDMQKRISEET---HHALTELSTN-- 76 (144)
T ss_pred CceEEEEEccCChhHHHHHHHHHHHHHhhCCEEEEEEEccChhhhhhhhhhcchHHHHHHHHHHH---HHHHHHHHHh--
Confidence 5799999999999999999999999998999999999954321111 0 0 011111112222 2233333333
Q ss_pred CCccEE-EEEEcCCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeCC
Q 026225 145 PEVQFE-VAVVEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRK 220 (241)
Q Consensus 145 ~~v~v~-~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~ 220 (241)
.|+.+. ..+..|++.. .|+++|+++++||||||+++ + ..+. + ||++++|+++++||||+||.+
T Consensus 77 ~~~~~~~~~~~~G~p~~-~I~~~a~~~~~DLIV~Gs~~-~-~~~~-l---------gSva~~v~~~a~~pVLvv~~~ 140 (144)
T PRK15118 77 AGYPITETLSGSGDLGQ-VLVDAIKKYDMDLVVCGHHQ-D-FWSK-L---------MSSARQLINTVHVDMLIVPLR 140 (144)
T ss_pred CCCCceEEEEEecCHHH-HHHHHHHHhCCCEEEEeCcc-c-HHHH-H---------HHHHHHHHhhCCCCEEEecCC
Confidence 366654 4555788765 99999999999999999996 3 3344 4 999999999999999999864
No 7
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=99.85 E-value=4.4e-20 Score=142.17 Aligned_cols=132 Identities=14% Similarity=0.296 Sum_probs=107.5
Q ss_pred EEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEEE
Q 026225 73 KIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEVA 152 (241)
Q Consensus 73 ~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~ 152 (241)
+||||+|+++++..++++|..+|...+++|+++|++++...... .......+..++.++.+.+.+... |++++..
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~~~~~v~ll~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~ 75 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARAQNGEIIPLNVIEVPNHSSP---SQLEVNVQRARKLLRQAERIAASL--GVPVHTI 75 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhcCCCeEEEEEEEecCCCCCc---chhHHHHHHHHHHHHHHHHHhhhc--CCceEEE
Confidence 59999999999999999999999999999999999986442211 112233455666777777776653 8888888
Q ss_pred EEcCCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEe
Q 026225 153 VVEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVR 218 (241)
Q Consensus 153 ~~~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~ 218 (241)
+..+....+.|++.++++++|+||||+++++.+.++++ ||++++++++++|||++||
T Consensus 76 ~~~~~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~l---------Gs~~~~v~~~~~~pvlvv~ 132 (132)
T cd01988 76 IRIDHDIASGILRTAKERQADLIIMGWHGSTSLRDRLF---------GGVIDQVLESAPCDVAVVK 132 (132)
T ss_pred EEecCCHHHHHHHHHHhcCCCEEEEecCCCCCccceec---------CchHHHHHhcCCCCEEEeC
Confidence 86643355599999999999999999999998878877 9999999999999999985
No 8
>PRK10116 universal stress protein UspC; Provisional
Probab=99.85 E-value=4.3e-20 Score=144.80 Aligned_cols=137 Identities=16% Similarity=0.145 Sum_probs=100.0
Q ss_pred CCCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHH-HHHHHHHHHHhhCCCcc
Q 026225 70 SGRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYE-FVHSLKNMCQQKRPEVQ 148 (241)
Q Consensus 70 ~~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~v~ 148 (241)
++++|||++|+++.+..++++|+.+|...+++|+++|++++............+...+...+ ..+.+++.... .++.
T Consensus 2 ~~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~ 79 (142)
T PRK10116 2 SYSNILVAVAVTPESQQLLAKAVSIARPVNGKISLITLASDPEMYNQFAAPMLEDLRSVMQEETQSFLDKLIQD--ADYP 79 (142)
T ss_pred CCceEEEEccCCcchHHHHHHHHHHHHHhCCEEEEEEEccCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHh--cCCC
Confidence 57999999999999999999999999999999999999875432111111111111222221 11223233332 3665
Q ss_pred EE-EEEEcCCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeCC
Q 026225 149 FE-VAVVEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRK 220 (241)
Q Consensus 149 v~-~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~ 220 (241)
.+ ..+..|++.. .|++++++.++||||||+++++.+.++ +|++++|+++++||||+||..
T Consensus 80 ~~~~~~~~G~~~~-~I~~~a~~~~~DLiV~g~~~~~~~~~~-----------~s~a~~v~~~~~~pVLvv~~~ 140 (142)
T PRK10116 80 IEKTFIAYGELSE-HILEVCRKHHFDLVICGNHNHSFFSRA-----------SCSAKRVIASSEVDVLLVPLT 140 (142)
T ss_pred eEEEEEecCCHHH-HHHHHHHHhCCCEEEEcCCcchHHHHH-----------HHHHHHHHhcCCCCEEEEeCC
Confidence 54 5666788765 999999999999999999999888775 469999999999999999854
No 9
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=99.84 E-value=7.5e-20 Score=140.24 Aligned_cols=123 Identities=23% Similarity=0.322 Sum_probs=101.8
Q ss_pred EEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEEE
Q 026225 73 KIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEVA 152 (241)
Q Consensus 73 ~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~ 152 (241)
+||||+|+++.++.+++||..++...+++|+++||.++... ...++.++.++.+.+.+.+. ++ +..
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~----------~~~~~~~~~l~~~~~~~~~~--~~--~~~ 66 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADRLKAPWYVVYVETPRLN----------RLSEAERRRLAEALRLAEEL--GA--EVV 66 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHhCCCEEEEEEecCccc----------cCCHHHHHHHHHHHHHHHHc--CC--EEE
Confidence 59999999999999999999999999999999999886432 12234456667777666643 44 344
Q ss_pred EEcCCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcC-CceEEEEe
Q 026225 153 VVEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNA-DCMAVAVR 218 (241)
Q Consensus 153 ~~~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a-~~pVlvV~ 218 (241)
++.+.+..++|+++++++++|+||||+++++.+.++++ ||++++|++++ +|||+|++
T Consensus 67 ~~~~~~~~~~I~~~~~~~~~dllviG~~~~~~~~~~~~---------Gs~~~~v~~~a~~~~v~v~~ 124 (124)
T cd01987 67 TLPGDDVAEAIVEFAREHNVTQIVVGKSRRSRWRELFR---------GSLVDRLLRRAGNIDVHIVA 124 (124)
T ss_pred EEeCCcHHHHHHHHHHHcCCCEEEeCCCCCchHHHHhc---------ccHHHHHHHhCCCCeEEEeC
Confidence 55555566799999999999999999999999999999 99999999999 99999984
No 10
>PRK11175 universal stress protein UspE; Provisional
Probab=99.82 E-value=2.4e-19 Score=157.68 Aligned_cols=151 Identities=14% Similarity=0.185 Sum_probs=115.3
Q ss_pred CCCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCC---Cchh---hHhhhhHHHHHHHHHHHHHHHhh
Q 026225 70 SGRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQA---TGEE---SGKQRAPRGYEFVHSLKNMCQQK 143 (241)
Q Consensus 70 ~~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~---~~~~---~~~~~~~~~~~~l~~~~~~~~~~ 143 (241)
|+++|||++|+|+.+..|+++|+.+|...+++|+++|+++....... .... ..+...+...+.++.+...+..
T Consensus 2 ~~~~ILv~~D~s~~~~~al~~a~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 80 (305)
T PRK11175 2 KYQNILVVIDPNQDDQPALRRAVYLAQRNGGKITAFLPIYDFSYEMTTLLSPDEREAMRQGVISQRTAWIREQAKPYLD- 80 (305)
T ss_pred CcceEEEEcCCCccccHHHHHHHHHHHhcCCCEEEEEeccCchhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHhh-
Confidence 57999999999999999999999999999999999999864321110 1111 1111222334445555544433
Q ss_pred CCCccEEEEEEc-CCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeCCCc
Q 026225 144 RPEVQFEVAVVE-GKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRKSK 222 (241)
Q Consensus 144 ~~~v~v~~~~~~-G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~~~ 222 (241)
.+++++..+.. |.+. +.|+++++++++||||||+++.+.+.++++ ||++++|+++++||||+|+....
T Consensus 81 -~~~~~~~~v~~~g~~~-~~i~~~a~~~~~DLiV~G~~~~~~~~~~~~---------gs~~~~l~~~~~~pvlvv~~~~~ 149 (305)
T PRK11175 81 -AGIPIEIKVVWHNRPF-EAIIQEVIAGGHDLVVKMTHQHDKLESVIF---------TPTDWHLLRKCPCPVLMVKDQDW 149 (305)
T ss_pred -cCCceEEEEecCCCcH-HHHHHHHHhcCCCEEEEeCCCCcHHHhhcc---------ChhHHHHHhcCCCCEEEeccccc
Confidence 47889888775 6655 499999999999999999999999999998 99999999999999999998643
Q ss_pred -CCCCeEEecc
Q 026225 223 -KLGGYLITTK 232 (241)
Q Consensus 223 -~~~~~li~t~ 232 (241)
....+|+.+.
T Consensus 150 ~~~~~Ilva~D 160 (305)
T PRK11175 150 PEGGKILVAVN 160 (305)
T ss_pred CCCCeEEEEeC
Confidence 3456777664
No 11
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=99.77 E-value=1.3e-17 Score=126.44 Aligned_cols=130 Identities=29% Similarity=0.508 Sum_probs=109.0
Q ss_pred EEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEEE
Q 026225 73 KIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEVA 152 (241)
Q Consensus 73 ~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~ 152 (241)
+|||++|+++.+..++++|..+|...+++|+++||.++...... ...+....+.++.++++...+.. .++++...
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~~~~i~~l~v~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~ 75 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRLGAELVLLHVVDPPPSSAA---ELAELLEEEARALLEALREALAE--AGVKVETV 75 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCCCCcch---hHHHHHHHHHHHHHHHHHHHHhc--CCCceEEE
Confidence 59999999999999999999999999999999999886542221 33344455666777777766633 48999999
Q ss_pred EEcCCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEE
Q 026225 153 VVEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAV 217 (241)
Q Consensus 153 ~~~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV 217 (241)
+..|.+ .++|.++++++++|+||||+++++.+.++++ |+++++++++++||||+|
T Consensus 76 ~~~~~~-~~~i~~~~~~~~~dlvvig~~~~~~~~~~~~---------~~~~~~ll~~~~~pvliv 130 (130)
T cd00293 76 VLEGDP-AEAILEAAEELGADLIVMGSRGRSGLRRLLL---------GSVAERVLRHAPCPVLVV 130 (130)
T ss_pred EecCCC-HHHHHHHHHHcCCCEEEEcCCCCCccceeee---------ccHHHHHHhCCCCCEEeC
Confidence 999987 5699999999999999999999988877777 999999999999999985
No 12
>PRK11175 universal stress protein UspE; Provisional
Probab=99.76 E-value=4.8e-18 Score=149.45 Aligned_cols=137 Identities=19% Similarity=0.228 Sum_probs=101.0
Q ss_pred CCCEEEEeecCCHH-------HHHHHHHHHHhhccC-CCEEEEEEEEcCCCCCC------CCchhhHhhhhHHHHHHHHH
Q 026225 70 SGRKIMIVVDSSNE-------AKGALQWSLTHTVQS-QDKVVLVYVIKPSNNKQ------ATGEESGKQRAPRGYEFVHS 135 (241)
Q Consensus 70 ~~~~ILVavD~s~~-------s~~al~~A~~~a~~~-~~~l~LlhV~~~~~~~~------~~~~~~~~~~~~~~~~~l~~ 135 (241)
.+++||||+|+++. +..++++|..+|... +++|+++||++...... .......+...+...+.
T Consensus 151 ~~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 227 (305)
T PRK11175 151 EGGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQLNHAEVHLVNAYPVTPINIAIELPEFDPSVYNDAIRGQHLLA--- 227 (305)
T ss_pred CCCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhCcCCceEEEEEecCcchhccccccccchhhHHHHHHHHHHHH---
Confidence 46899999999864 367999999999888 99999999987433111 01111222222222223
Q ss_pred HHHHHHhhCCCccE-EEEEEcCCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceE
Q 026225 136 LKNMCQQKRPEVQF-EVAVVEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMA 214 (241)
Q Consensus 136 ~~~~~~~~~~~v~v-~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pV 214 (241)
+++..+.. ++.. ...+..|++. +.|.+++++.++||||||+++++.+.++|+ ||++++|+++++|||
T Consensus 228 l~~~~~~~--~~~~~~~~v~~G~~~-~~I~~~a~~~~~DLIVmG~~~~~~~~~~ll---------GS~a~~v~~~~~~pV 295 (305)
T PRK11175 228 MKALRQKF--GIDEEQTHVEEGLPE-EVIPDLAEHLDAELVILGTVGRTGLSAAFL---------GNTAEHVIDHLNCDL 295 (305)
T ss_pred HHHHHHHh--CCChhheeeccCCHH-HHHHHHHHHhCCCEEEECCCccCCCcceee---------cchHHHHHhcCCCCE
Confidence 33333332 4543 4566778865 499999999999999999999999999999 999999999999999
Q ss_pred EEEeCCC
Q 026225 215 VAVRRKS 221 (241)
Q Consensus 215 lvV~~~~ 221 (241)
|+||+.+
T Consensus 296 Lvv~~~~ 302 (305)
T PRK11175 296 LAIKPDG 302 (305)
T ss_pred EEEcCCC
Confidence 9998654
No 13
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=99.75 E-value=8.7e-17 Score=126.15 Aligned_cols=141 Identities=27% Similarity=0.396 Sum_probs=115.1
Q ss_pred CCCCEEEEeec-CCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCc--------hhhHhhhhHHHHHHHHHHHHH
Q 026225 69 SSGRKIMIVVD-SSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATG--------EESGKQRAPRGYEFVHSLKNM 139 (241)
Q Consensus 69 ~~~~~ILVavD-~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~ 139 (241)
.++++|++++| +++.+..++++|..++...+..+.+++|.+......... ............+.++.+.+.
T Consensus 3 ~~~~~il~~~d~~s~~~~~a~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (154)
T COG0589 3 AMYKKILVAVDVGSEAAEKALEEAVALAKRLGAPLILLVVIDPLEPTALVSVALADAPIPLSEEELEEEAEELLAEAKAL 82 (154)
T ss_pred cccceEEEEeCCCCHHHHHHHHHHHHHHHhcCCeEEEEEEecccccccccccccccchhhhhHHHHHHHHHHHHHHHHHH
Confidence 46899999999 999999999999999999999999999988654211111 011233345556677777776
Q ss_pred HHhhCCCcc-EEEEEEcCCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEe
Q 026225 140 CQQKRPEVQ-FEVAVVEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVR 218 (241)
Q Consensus 140 ~~~~~~~v~-v~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~ 218 (241)
.... ++. ++..+..|++....|++++.+.++|+||||+++++.+.++++ ||++++++++++|||++++
T Consensus 83 ~~~~--~~~~~~~~~~~g~~~~~~i~~~a~~~~adliV~G~~g~~~l~~~ll---------Gsvs~~v~~~~~~pVlvv~ 151 (154)
T COG0589 83 AEAA--GVPVVETEVVEGSPSAEEILELAEEEDADLIVVGSRGRSGLSRLLL---------GSVAEKVLRHAPCPVLVVR 151 (154)
T ss_pred HHHc--CCCeeEEEEecCCCcHHHHHHHHHHhCCCEEEECCCCCccccceee---------ehhHHHHHhcCCCCEEEEc
Confidence 6654 677 589999999966699999999999999999999999999888 9999999999999999998
Q ss_pred CC
Q 026225 219 RK 220 (241)
Q Consensus 219 ~~ 220 (241)
..
T Consensus 152 ~~ 153 (154)
T COG0589 152 SE 153 (154)
T ss_pred cC
Confidence 65
No 14
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=99.44 E-value=3.1e-12 Score=115.14 Aligned_cols=133 Identities=14% Similarity=0.204 Sum_probs=94.4
Q ss_pred CCCCEEEEeecCCHHHHHHHHHHHHhhccC--CCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHh----
Q 026225 69 SSGRKIMIVVDSSNEAKGALQWSLTHTVQS--QDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQ---- 142 (241)
Q Consensus 69 ~~~~~ILVavD~s~~s~~al~~A~~~a~~~--~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---- 142 (241)
.+++|||||+|+|+.|+.|+++|+++|... +++|++|||++....... .....+.+++.++++.+.++.
T Consensus 3 ~~ykkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~~~-----~~~~~~~~eelle~~~~~~~~~l~~ 77 (357)
T PRK12652 3 MAANRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVDPE-----GQDELAAAEELLERVEVWATEDLGD 77 (357)
T ss_pred cccCeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCcccccc-----hhHHHHHHHHHHHHHHHHHHHhhhc
Confidence 578999999999999999999999999884 599999999986432111 112234455566666665543
Q ss_pred hCCCccEEEEEEc--------CCCchHHHHHHHHHcCCcEEEEccCCC-CchhhHhhhhcCCCCCCCCHHHHHHhcCCce
Q 026225 143 KRPEVQFEVAVVE--------GKEKGPAIVEEARKQGVALLVLGQKKR-STTWRLFMMWAGNRVPGGSFVEYCIQNADCM 213 (241)
Q Consensus 143 ~~~~v~v~~~~~~--------G~~~~~~I~~~a~~~~~dllVmG~~~~-~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~p 213 (241)
...|+++++.++. |++. +.|+++|+++++||||||..=. +..-.++ - --+.-+.++.|.
T Consensus 78 ~~~gV~ve~~vv~~~~~~~~~G~pa-e~Iv~~Aee~~aDLIVm~~~~~~~~~~~~~----------~-~~~~~~~~~~~~ 145 (357)
T PRK12652 78 DASSVTIETALLGTDEYLFGPGDYA-EVLIAYAEEHGIDRVVLDPEYNPGGTAPML----------Q-PLERELARAGIT 145 (357)
T ss_pred ccCCCceEEEEEeccccccCCCCHH-HHHHHHHHHcCCCEEEECCCCCCCCCCccc----------c-hHHHHHHhcCCc
Confidence 1248999988877 6765 5999999999999999997643 3333333 2 335556667766
Q ss_pred EEEEe
Q 026225 214 AVAVR 218 (241)
Q Consensus 214 VlvV~ 218 (241)
+=.-+
T Consensus 146 ~~~~~ 150 (357)
T PRK12652 146 YEEAP 150 (357)
T ss_pred eecCC
Confidence 65554
No 15
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=99.16 E-value=8.4e-10 Score=106.28 Aligned_cols=131 Identities=19% Similarity=0.290 Sum_probs=110.2
Q ss_pred CCCCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCcc
Q 026225 69 SSGRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQ 148 (241)
Q Consensus 69 ~~~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~ 148 (241)
....+||||++.++.++..+++|.++|.+.+++++.|||..+..... .+.....++....++++ +-
T Consensus 246 ~~~e~ilvcI~~~~~~e~liR~a~RlA~~~~a~~~av~v~~~~~~~~----------~~~~~~~l~~~~~Lae~----lG 311 (890)
T COG2205 246 AARERILVCISGSPGSEKLIRRAARLASRLHAKWTAVYVETPELHRL----------SEKEARRLHENLRLAEE----LG 311 (890)
T ss_pred cccceEEEEECCCCchHHHHHHHHHHHHHhCCCeEEEEEeccccccc----------cHHHHHHHHHHHHHHHH----hC
Confidence 34579999999999999999999999999999999999988765222 23444456666666665 55
Q ss_pred EEEEEEcCCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcC-CceEEEEeCCCc
Q 026225 149 FEVAVVEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNA-DCMAVAVRRKSK 222 (241)
Q Consensus 149 v~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a-~~pVlvV~~~~~ 222 (241)
-+++.+.|.++.++|.++|+.+++.-||||...++.++.++. |+.++++++.. .+.|.+|+...+
T Consensus 312 ae~~~l~~~dv~~~i~~ya~~~~~TkiViG~~~~~rw~~~~~---------~~l~~~L~~~~~~idv~ii~~~~~ 377 (890)
T COG2205 312 AEIVTLYGGDVAKAIARYAREHNATKIVIGRSRRSRWRRLFK---------GSLADRLAREAPGIDVHIVALDAP 377 (890)
T ss_pred CeEEEEeCCcHHHHHHHHHHHcCCeeEEeCCCcchHHHHHhc---------ccHHHHHHhcCCCceEEEeeCCCC
Confidence 677788888899999999999999999999999999988888 99999999999 588889987655
No 16
>PRK10490 sensor protein KdpD; Provisional
Probab=99.12 E-value=1.3e-09 Score=109.28 Aligned_cols=127 Identities=13% Similarity=0.174 Sum_probs=98.0
Q ss_pred CCCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccE
Q 026225 70 SGRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQF 149 (241)
Q Consensus 70 ~~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v 149 (241)
...+|||||++++.++.++++|.++|.+.++++++|||..+..... . .+...++.+.+ +++++. |.+
T Consensus 249 ~~eriLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~~------~---~~~~~~l~~~~-~lA~~l--Ga~- 315 (895)
T PRK10490 249 TRDAILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRLHRL------P---EKKRRAILSAL-RLAQEL--GAE- 315 (895)
T ss_pred cCCeEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCcCcC------C---HHHHHHHHHHH-HHHHHc--CCE-
Confidence 5678999999999999999999999999999999999987532111 0 11222222333 455542 555
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCC-ceEEEEeCCC
Q 026225 150 EVAVVEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNAD-CMAVAVRRKS 221 (241)
Q Consensus 150 ~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~-~pVlvV~~~~ 221 (241)
++.+.|+++.++|+++|++++++.||||...++.+ ++. ||+++++++.++ +.|.||+...
T Consensus 316 -~~~~~~~dva~~i~~~A~~~~vt~IViG~s~~~~~--~~~---------~s~~~~l~r~~~~idi~iv~~~~ 376 (895)
T PRK10490 316 -TATLSDPAEEKAVLRYAREHNLGKIIIGRRASRRW--WRR---------ESFADRLARLGPDLDLVIVALDE 376 (895)
T ss_pred -EEEEeCCCHHHHHHHHHHHhCCCEEEECCCCCCCC--ccC---------CCHHHHHHHhCCCCCEEEEeCCc
Confidence 56778888888999999999999999999888754 444 899999999995 9999997543
No 17
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=98.32 E-value=2.3e-06 Score=61.22 Aligned_cols=84 Identities=15% Similarity=0.194 Sum_probs=71.8
Q ss_pred EEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEEEE
Q 026225 74 IMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEVAV 153 (241)
Q Consensus 74 ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~~ 153 (241)
|+++++++.+|..++.||.+++ ..+.++..+|+.
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~~-~~~~~~~~~~~~--------------------------------------------- 34 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLK-SGGPEVVALVVV--------------------------------------------- 34 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHHH-hcCCCEEEEEeH---------------------------------------------
Confidence 6899999999999999999987 456688888884
Q ss_pred EcCCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCC-CHHHHHHhcCCceEEE
Q 026225 154 VEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGG-SFVEYCIQNADCMAVA 216 (241)
Q Consensus 154 ~~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~G-sv~~~vi~~a~~pVlv 216 (241)
.....+.+.+++.++|+|++|++........+. | +++.+++..++|||+.
T Consensus 35 ----~~~~~~~~~a~~~~~~~Iv~G~~~~d~~~~~~~---------~~~~~~~~~~~~~~~vl~ 85 (86)
T cd01984 35 ----AFVRILKRLAAEEGADVIILGHNADDVAGRRLG---------ASANVLVVIKGAGIPVLT 85 (86)
T ss_pred ----HHHHHHHHHHHHcCCCEEEEcCCchhhhhhccC---------chhhhhhcccccCCceeC
Confidence 334478888999999999999999888887775 6 8999999999999974
No 18
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=97.36 E-value=0.0027 Score=63.72 Aligned_cols=147 Identities=10% Similarity=0.121 Sum_probs=88.9
Q ss_pred CCEEEEeecCCHHHHHHHHHHHHh--hccCCCEEEEEEEEcCCCCCCC----Cc--hhhH---hhhhHHHHHHHHHHHHH
Q 026225 71 GRKIMIVVDSSNEAKGALQWSLTH--TVQSQDKVVLVYVIKPSNNKQA----TG--EESG---KQRAPRGYEFVHSLKNM 139 (241)
Q Consensus 71 ~~~ILVavD~s~~s~~al~~A~~~--a~~~~~~l~LlhV~~~~~~~~~----~~--~~~~---~~~~~~~~~~l~~~~~~ 139 (241)
.-|||+|+...++....+..+--. ..+..-.+.++|.++-...... .. +... .+.....++.++.++..
T Consensus 458 elriL~cv~~~~~v~~li~Lle~s~~t~~sp~~vy~lhLveL~~r~~~~l~~h~~~~~~~~~~~~~~~~~~~i~~af~~~ 537 (832)
T PLN03159 458 ELRMLVCVHTPRNVPTIINLLEASHPTKRSPICIYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENY 537 (832)
T ss_pred ceeEEEEeccCCcHHHHHHHHHhcCCCCCCCceEEEEEEEeecCCCccceeeeecccccccccccccccccHHHHHHHHH
Confidence 468999999888887777664332 2223357999999884421111 00 0000 00111233444444433
Q ss_pred HHhhCCCccEEEEEE--cCCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEE
Q 026225 140 CQQKRPEVQFEVAVV--EGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAV 217 (241)
Q Consensus 140 ~~~~~~~v~v~~~~~--~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV 217 (241)
-+.. .++.++.... .-+...+.|+..|++..+++||++.+++....+-+ -+....++.+..+|++++||+|-|.
T Consensus 538 ~~~~-~~v~v~~~t~vs~~~~mh~dIc~~A~d~~~slIilpfhk~~~~dg~~---~~~~~~~r~~n~~VL~~ApCsVgIl 613 (832)
T PLN03159 538 EQHA-GCVSVQPLTAISPYSTMHEDVCNLAEDKRVSLIIIPFHKQQTVDGGM---EATNPAFRGVNQNVLANAPCSVGIL 613 (832)
T ss_pred Hhhc-CceEEEEEEEEeCcccHHHHHHHHHHhcCCCEEEECCCCccCCCCCc---cccCchHHHHHHHHHccCCCCEEEE
Confidence 3221 2477765444 44478889999999999999999998753322210 0111223678899999999999998
Q ss_pred eCCC
Q 026225 218 RRKS 221 (241)
Q Consensus 218 ~~~~ 221 (241)
=+++
T Consensus 614 VDRg 617 (832)
T PLN03159 614 VDRG 617 (832)
T ss_pred EeCC
Confidence 7765
No 19
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=96.99 E-value=0.017 Score=47.14 Aligned_cols=101 Identities=15% Similarity=0.241 Sum_probs=69.2
Q ss_pred EEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEEE
Q 026225 73 KIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEVA 152 (241)
Q Consensus 73 ~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~ 152 (241)
+|+|++++..+|.-++..+.+.+...+.++.++||..... ....+..+.++..++.. |++....
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~~~~v~~v~vd~g~~--------------~~~~~~~~~~~~~~~~~--gi~~~~~ 64 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKLKIRLIAAHVDHGLR--------------PESDEEAEFVQQFCKKL--NIPLEIK 64 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCC--------------hhHHHHHHHHHHHHHHc--CCCEEEE
Confidence 5899999999999999988887766677899999865432 01122334455566553 6766554
Q ss_pred EEcCC--------Cch--------HHHHHHHHHcCCcEEEEccCCCCchhhHh
Q 026225 153 VVEGK--------EKG--------PAIVEEARKQGVALLVLGQKKRSTTWRLF 189 (241)
Q Consensus 153 ~~~G~--------~~~--------~~I~~~a~~~~~dllVmG~~~~~~~~~~l 189 (241)
-.... ... ..+.+.|++++++.|+.|.+.......++
T Consensus 65 ~~~~~~~~~~~~~~~~~~~r~~R~~~l~~~a~~~g~~~i~~Gh~~~D~~e~~l 117 (189)
T TIGR02432 65 KVDVKALAKGKKKNLEEAAREARYDFFEEIAKKHGADYILTAHHADDQAETIL 117 (189)
T ss_pred EecchhhccccCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCccHHHHHHHH
Confidence 44311 122 47888999999999999998765555544
No 20
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=96.95 E-value=0.0076 Score=49.19 Aligned_cols=107 Identities=16% Similarity=0.225 Sum_probs=67.5
Q ss_pred EEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEEE
Q 026225 73 KIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEVA 152 (241)
Q Consensus 73 ~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~ 152 (241)
+|+|++.+..+|..++..+..+....+.++.++||..... ....+....+++.|+.. +++..+.
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~~~~~~~~~vdh~~~--------------~~s~~~~~~v~~~~~~~--~i~~~~~ 64 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRNGIKLIAVHVDHGLR--------------EESDEEAEFVEEICEQL--GIPLYIV 64 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTTTTEEEEEEEE-STS--------------CCHHHHHHHHHHHHHHT--T-EEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCC--------------cccchhHHHHHHHHHhc--CCceEEE
Confidence 6999999999999888888888888888999999987533 11112234456666664 6777665
Q ss_pred EEc-----CCCch--------HHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCC
Q 026225 153 VVE-----GKEKG--------PAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGN 195 (241)
Q Consensus 153 ~~~-----G~~~~--------~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~ 195 (241)
-.. +...+ ..+.+.|.+++++.|++|.+..-....+|+....+
T Consensus 65 ~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh~dD~~ET~l~~l~rg 120 (182)
T PF01171_consen 65 RIDEDRKKGSNIEECARELRYQFLREIAKEEGCNKIALGHHLDDQAETFLMNLLRG 120 (182)
T ss_dssp E--CHCCTTSTCHHHHHHHHHHHHHHHHHTTT-CEEE---BHHHHHHHHHHHHHHT
T ss_pred EeeeeecccCCHHHHHHHHHHHHHHHhhhcccccceeecCcCCccHHHHHHHHHHh
Confidence 555 22221 35667888999999999998776676666644433
No 21
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=96.18 E-value=0.12 Score=41.91 Aligned_cols=101 Identities=14% Similarity=0.167 Sum_probs=66.2
Q ss_pred EEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEEE
Q 026225 73 KIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEVA 152 (241)
Q Consensus 73 ~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~ 152 (241)
+|+|++++..+|.-++..+.......+.++.++|+..... ....+..+.+.+.+... |++..+.
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~~~~v~~v~id~~~~--------------~~~~~~~~~~~~~~~~~--~i~~~~~ 64 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRLGLRLVAVHVDHGLR--------------PESDEEAAFVADLCAKL--GIPLYIL 64 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCCC--------------chHHHHHHHHHHHHHHc--CCcEEEE
Confidence 5899999999999888888777655567899999965422 01123334455555543 6666654
Q ss_pred --E-EcCCCc----------hHHHHHHHHHcCCcEEEEccCCCCchhhHh
Q 026225 153 --V-VEGKEK----------GPAIVEEARKQGVALLVLGQKKRSTTWRLF 189 (241)
Q Consensus 153 --~-~~G~~~----------~~~I~~~a~~~~~dllVmG~~~~~~~~~~l 189 (241)
. ..+... -..+.++|++++++.|+.|.+.......++
T Consensus 65 ~~~~~~~~~~~~~~~~r~~r~~~l~~~a~~~~~~~i~~Gh~~dD~~e~~l 114 (185)
T cd01992 65 VVALAPKPGGNLEAAAREARYDFFAEIAKEHGADVLLTAHHADDQAETVL 114 (185)
T ss_pred eeccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcHHHHHHHH
Confidence 1 111111 135778899999999999998765544444
No 22
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=95.76 E-value=0.27 Score=49.62 Aligned_cols=148 Identities=14% Similarity=0.214 Sum_probs=85.2
Q ss_pred CCCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCC--------C------chhhHhhhhHHHHHHHHH
Q 026225 70 SGRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQA--------T------GEESGKQRAPRGYEFVHS 135 (241)
Q Consensus 70 ~~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~--------~------~~~~~~~~~~~~~~~l~~ 135 (241)
...+|.+..=+.++.+.||.+|.+++.+++-.++++|.......... . ..+..+.+++.-++.+++
T Consensus 629 ~~~~v~~~F~GG~DDREALa~a~rma~~p~v~lTVirf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~D~~~~~e 708 (832)
T PLN03159 629 VSHHVAVLFFGGPDDREALAYAWRMSEHPGITLTVMRFIPGEDAAPTASQPASSPSDPRIPTVETDGKKERQLDEEYINE 708 (832)
T ss_pred cceeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEEcccccccccccccccccccccccccccchhHHHHHHHHHHH
Confidence 45699999988899999999999999999999999999875321110 0 001112223334445555
Q ss_pred HHHHHHhhCCCccEEEEEE-cCCCchHHHHHHHHHcCCcEEEEccCCC--CchhhHhhhhcCCCCCCCCHHHHHHhc---
Q 026225 136 LKNMCQQKRPEVQFEVAVV-EGKEKGPAIVEEARKQGVALLVLGQKKR--STTWRLFMMWAGNRVPGGSFVEYCIQN--- 209 (241)
Q Consensus 136 ~~~~~~~~~~~v~v~~~~~-~G~~~~~~I~~~a~~~~~dllVmG~~~~--~~~~~~l~~~~~~~~~~Gsv~~~vi~~--- 209 (241)
+++..... ..+.+.-+++ +|.+.-..|.+. ..++||+|+|.... +.+-.-+..|. +---.|.+-+.+...
T Consensus 709 f~~~~~~~-~~v~y~E~~V~~~~e~~~~l~~~--~~~ydL~iVGr~~~~~~~~~~gL~~w~-e~pELG~iGD~LaS~d~~ 784 (832)
T PLN03159 709 FRARNAGN-ESIVYTEKVVSNGEETVAAIRSM--DSAHDLFIVGRGQGMISPLTAGLTDWS-ECPELGAIGDLLASSDFA 784 (832)
T ss_pred HHHhcCCC-CceEEEEEecCCHHHHHHHHHHh--hccCcEEEEecCCCCCcchhccccccc-cCCccchhhhHHhcCCCC
Confidence 55544321 2344433333 344333233222 22599999997543 22222233565 223356666666654
Q ss_pred CCceEEEEeCCC
Q 026225 210 ADCMAVAVRRKS 221 (241)
Q Consensus 210 a~~pVlvV~~~~ 221 (241)
+...||||-...
T Consensus 785 ~~~SVLVvQQ~~ 796 (832)
T PLN03159 785 ATVSVLVVQQYV 796 (832)
T ss_pred CceeEEEEEeec
Confidence 357899996543
No 23
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=94.83 E-value=0.34 Score=39.00 Aligned_cols=101 Identities=11% Similarity=0.134 Sum_probs=61.9
Q ss_pred EEEEeecCCHHHHHHHHHHHHhhccC--CCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEE
Q 026225 73 KIMIVVDSSNEAKGALQWSLTHTVQS--QDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFE 150 (241)
Q Consensus 73 ~ILVavD~s~~s~~al~~A~~~a~~~--~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~ 150 (241)
+|+|++.+..+|..++..+.+..... +-++..+|+...... . .. +..+.++..+... |+++.
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~d~~~~~-~----------~~---~~~~~~~~~~~~~--~i~~~ 64 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVDEGIPG-Y----------RD---ESLEVVERLAEEL--GIELE 64 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEEECCCCC-C----------cH---HHHHHHHHHHHHc--CCceE
Confidence 58999999999998888877766443 568899998754321 0 01 1122233444433 45544
Q ss_pred EEEEc-------------C--------CCchHHHHHHHHHcCCcEEEEccCCCCchhhHh
Q 026225 151 VAVVE-------------G--------KEKGPAIVEEARKQGVALLVLGQKKRSTTWRLF 189 (241)
Q Consensus 151 ~~~~~-------------G--------~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l 189 (241)
..-.. + ...-..+.+.|++++++.|+.|.+..-....++
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~r~~~l~~~a~~~g~~~l~~Gh~~dD~~et~l 124 (185)
T cd01993 65 IVSFKEEYTDDIEVKKRGGKSPCSLCGVLRRGLLNKIAKELGADKLATGHNLDDEAETLL 124 (185)
T ss_pred EEehhhhcchhhhhhccCCCCCCCccHHHHHHHHHHHHHHcCCCEEEEcCChHHHHHHHH
Confidence 43331 0 111236778899999999999988754444433
No 24
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=94.41 E-value=0.6 Score=40.73 Aligned_cols=102 Identities=15% Similarity=0.179 Sum_probs=63.2
Q ss_pred CCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEE
Q 026225 71 GRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFE 150 (241)
Q Consensus 71 ~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~ 150 (241)
..+|+|++.+..+|..+|..+.++... -++.++||...... .... ..+..+.+|... ++...
T Consensus 21 ~~~ilVavSGGkDS~~ll~~L~~l~~~--~~~~a~~Vd~~~~~-----------~~~~---~~~~~~~~~~~~--~~~~~ 82 (298)
T COG0037 21 EYKILVAVSGGKDSLALLHLLKELGRR--IEVEAVHVDHGLRG-----------YSDQ---EAELVEKLCEKL--GIPLI 82 (298)
T ss_pred CCeEEEEeCCChHHHHHHHHHHHhccC--ceEEEEEecCCCCC-----------ccch---HHHHHHHHHHHh--CCceE
Confidence 479999999999999888887776654 78999999775431 0111 222233344432 33221
Q ss_pred EEEE---cCC--------------CchHHHHHHHHHcCCcEEEEccCCCCchhhHhh
Q 026225 151 VAVV---EGK--------------EKGPAIVEEARKQGVALLVLGQKKRSTTWRLFM 190 (241)
Q Consensus 151 ~~~~---~G~--------------~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~ 190 (241)
+.-. .+. ..-..+.+.|.+.++|.|+.|.+.......+++
T Consensus 83 v~~~~~~~~~~~~~~~~~c~~c~~~R~~~l~~~a~~~g~~~i~tgH~~dD~~et~lm 139 (298)
T COG0037 83 VERVTDDLGRETLDGKSICAACRRLRRGLLYKIAKELGADKIATGHHLDDQAETFLM 139 (298)
T ss_pred EEEEEeeccccccCCCChhHHHHHHHHHHHHHHHHHcCCCeEEeccCcHHHHHHHHH
Confidence 1111 111 112246677889999999999988766665554
No 25
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=93.58 E-value=1 Score=42.12 Aligned_cols=105 Identities=18% Similarity=0.237 Sum_probs=62.7
Q ss_pred CCCEEEEeecCCHHHHHHHHHHHHhh-ccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCcc
Q 026225 70 SGRKIMIVVDSSNEAKGALQWSLTHT-VQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQ 148 (241)
Q Consensus 70 ~~~~ILVavD~s~~s~~al~~A~~~a-~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~ 148 (241)
...+|+|++.+..+|...+..+..+. ...+-+|.++||...-. ....+..+..++.|+.. |++
T Consensus 14 ~~~~ilvavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvnhglr--------------~~s~~~~~~~~~~~~~l--~i~ 77 (436)
T PRK10660 14 TSRQILVAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVHHGLS--------------PNADSWVKHCEQVCQQW--QVP 77 (436)
T ss_pred CCCeEEEEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEeCCCC--------------cchHHHHHHHHHHHHHc--CCc
Confidence 35789999999999997777666554 23467899999976432 12223334466677765 677
Q ss_pred EEEEEEcCCCchHHHHHHHHH----------cCCcEEEEccCCCCchhhHhh
Q 026225 149 FEVAVVEGKEKGPAIVEEARK----------QGVALLVLGQKKRSTTWRLFM 190 (241)
Q Consensus 149 v~~~~~~G~~~~~~I~~~a~~----------~~~dllVmG~~~~~~~~~~l~ 190 (241)
..+.-+.-......+...|++ ...+.|++|.+.......+|+
T Consensus 78 ~~~~~~~~~~~~~~~e~~AR~~Ry~~~~~~~~~~~~l~~aHh~DDq~ET~L~ 129 (436)
T PRK10660 78 LVVERVQLDQRGLGIEAAARQARYQAFARTLLPGEVLVTAQHLDDQCETFLL 129 (436)
T ss_pred EEEEEEeccCCCCCHHHHHHHHHHHHHHHHHHhCCEEEEcCchHHHHHHHHH
Confidence 665544321111112222211 123788888887766666665
No 26
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=93.20 E-value=1.6 Score=37.60 Aligned_cols=102 Identities=17% Similarity=0.275 Sum_probs=64.5
Q ss_pred CCCCEEEEeecCCHHHHHHHHHHHHhhccC--CCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCC
Q 026225 69 SSGRKIMIVVDSSNEAKGALQWSLTHTVQS--QDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPE 146 (241)
Q Consensus 69 ~~~~~ILVavD~s~~s~~al~~A~~~a~~~--~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 146 (241)
....+|+|++.+..+|..++.++..+..+. +-+|..+|+..... . . .+ + .+++.|+.. |
T Consensus 27 ~~~~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd~g~~--~-~--------~~---~---~~~~~~~~l--g 87 (258)
T PRK10696 27 EEGDRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLDQKQP--G-F--------PE---H---VLPEYLESL--G 87 (258)
T ss_pred CCCCEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEecCCCC--C-C--------CH---H---HHHHHHHHh--C
Confidence 456799999999999998887776765443 34788888754321 0 0 00 1 124556554 6
Q ss_pred ccEEEEEEc-----------CCC--------chHHHHHHHHHcCCcEEEEccCCCCchhhHh
Q 026225 147 VQFEVAVVE-----------GKE--------KGPAIVEEARKQGVALLVLGQKKRSTTWRLF 189 (241)
Q Consensus 147 v~v~~~~~~-----------G~~--------~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l 189 (241)
+++.+.-.+ +.. .-..+.++|++++++.|++|.+..-....+|
T Consensus 88 I~~~v~~~~~~~~~~~~~~~~~~~c~~c~~~R~~~l~~~a~~~g~~~Ia~GH~~dD~~Et~l 149 (258)
T PRK10696 88 VPYHIEEQDTYSIVKEKIPEGKTTCSLCSRLRRGILYRTARELGATKIALGHHRDDILETLF 149 (258)
T ss_pred CCEEEEEecchhhhhhhhccCCChhHHHHHHHHHHHHHHHHHcCCCEEEEcCchHHHHHHHH
Confidence 665543322 111 1136678889999999999998765555444
No 27
>TIGR00591 phr2 photolyase PhrII. All proteins in this family for which functions are known are DNA-photolyases used for the direct repair of UV irradiation induced DNA damage. Some repair 6-4 photoproducts while others repair cyclobutane pyrimidine dimers. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.27 E-value=3.3 Score=38.67 Aligned_cols=96 Identities=10% Similarity=0.056 Sum_probs=65.0
Q ss_pred EEEee--cCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEE
Q 026225 74 IMIVV--DSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEV 151 (241)
Q Consensus 74 ILVav--D~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~ 151 (241)
||+=. |.--....||..|++.|...+..|..|++.++..... ......-..+-|..+.+.++.. |+. .
T Consensus 25 vL~WFRrDLRl~DN~aL~~A~~~a~~~~~~vl~vyi~dp~~~~~------~~~r~~Fl~esL~~L~~~L~~~--g~~--L 94 (454)
T TIGR00591 25 VVYWMSRDQRVQDNWALIAAQTLALKKKLPLHVCFCLVDFFLAA------TRRHYFFMLGGLDEVANECERL--IIP--F 94 (454)
T ss_pred EEEEecCchhccCCHHHHHHHHHHHHcCCCEEEEEEeCCCcccc------cHHHHHHHHHHHHHHHHHHHHc--CCc--e
Confidence 44443 5555556788888877666677899999998754221 2223444555666666666652 444 4
Q ss_pred EEEcCCCchHHHHHHHHHcCCcEEEEccC
Q 026225 152 AVVEGKEKGPAIVEEARKQGVALLVLGQK 180 (241)
Q Consensus 152 ~~~~G~~~~~~I~~~a~~~~~dllVmG~~ 180 (241)
.+..|++.. .|.+++++++++.|+....
T Consensus 95 ~v~~g~~~~-~l~~l~~~~~i~~V~~~~~ 122 (454)
T TIGR00591 95 HLLDGPPKE-LLPYFVDLHAAAAVVTDFS 122 (454)
T ss_pred EEeecChHH-HHHHHHHHcCCCEEEEecc
Confidence 567888766 9999999999999999764
No 28
>PRK12342 hypothetical protein; Provisional
Probab=91.10 E-value=2.3 Score=36.79 Aligned_cols=103 Identities=12% Similarity=-0.011 Sum_probs=63.6
Q ss_pred CCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEEEEE----c
Q 026225 80 SSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEVAVV----E 155 (241)
Q Consensus 80 ~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~~~----~ 155 (241)
.++..++||+-|+++. +.+.+|+++++=++.. ...+++.++..+ |.+--+.+. .
T Consensus 33 iNp~D~~AlE~AlrLk-~~g~~Vtvls~Gp~~a---------------~~~~l~r~alam------GaD~avli~d~~~~ 90 (254)
T PRK12342 33 ISQFDLNAIEAASQLA-TDGDEIAALTVGGSLL---------------QNSKVRKDVLSR------GPHSLYLVQDAQLE 90 (254)
T ss_pred CChhhHHHHHHHHHHh-hcCCEEEEEEeCCChH---------------hHHHHHHHHHHc------CCCEEEEEecCccC
Confidence 4678899999999998 6788999999865421 111122222222 444333333 2
Q ss_pred CCCc---hHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEE
Q 026225 156 GKEK---GPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAV 217 (241)
Q Consensus 156 G~~~---~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV 217 (241)
|.+. +..|...+++.++|||+.|...--.-. |-+.-.+......|.+..
T Consensus 91 g~D~~ata~~La~~i~~~~~DLVl~G~~s~D~~t-------------gqvg~~lA~~Lg~P~vt~ 142 (254)
T PRK12342 91 HALPLDTAKALAAAIEKIGFDLLLFGEGSGDLYA-------------QQVGLLLGELLQLPVINA 142 (254)
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCC-------------CCHHHHHHHHhCCCcEee
Confidence 3333 568888888889999999976532211 445555556666665544
No 29
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=90.99 E-value=4.4 Score=32.10 Aligned_cols=89 Identities=12% Similarity=0.140 Sum_probs=56.8
Q ss_pred EEEEeecC-----CHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCc
Q 026225 73 KIMIVVDS-----SNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEV 147 (241)
Q Consensus 73 ~ILVavD~-----s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v 147 (241)
+|||-++. ++.+..+|..|.+++...+.+++++.+-+... .. +.+++.+..+ |+
T Consensus 1 ~ilv~~e~~~~~l~~~~~e~l~~A~~La~~~g~~v~av~~G~~~~----------------~~---~~l~~~l~~~--G~ 59 (164)
T PF01012_consen 1 NILVFAEHRDGRLNPVSLEALEAARRLAEALGGEVTAVVLGPAEE----------------AA---EALRKALAKY--GA 59 (164)
T ss_dssp EEEEEE-EETCEE-HHHHHHHHHHHHHHHCTTSEEEEEEEETCCC----------------HH---HHHHHHHHST--TE
T ss_pred CEEEEEECCCCccCHHHHHHHHHHHHHHhhcCCeEEEEEEecchh----------------hH---HHHhhhhhhc--CC
Confidence 46666664 48899999999999999999999998763121 11 2233333322 55
Q ss_pred cEEEEEEcC-------CCchHHHHHHHHHcCCcEEEEccCCC
Q 026225 148 QFEVAVVEG-------KEKGPAIVEEARKQGVALLVLGQKKR 182 (241)
Q Consensus 148 ~v~~~~~~G-------~~~~~~I~~~a~~~~~dllVmG~~~~ 182 (241)
+--+.+-.. ....+.|.+.+++.++|+|++|....
T Consensus 60 d~v~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~lVl~~~t~~ 101 (164)
T PF01012_consen 60 DKVYHIDDPALAEYDPEAYADALAELIKEEGPDLVLFGSTSF 101 (164)
T ss_dssp SEEEEEE-GGGTTC-HHHHHHHHHHHHHHHT-SEEEEESSHH
T ss_pred cEEEEecCccccccCHHHHHHHHHHHHHhcCCCEEEEcCcCC
Confidence 444343331 12455889999999999999997653
No 30
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=89.64 E-value=2.2 Score=37.02 Aligned_cols=117 Identities=14% Similarity=0.106 Sum_probs=74.4
Q ss_pred CCHHHHHHHHHHHHhhc-cCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEEEEEc---
Q 026225 80 SSNEAKGALQWSLTHTV-QSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEVAVVE--- 155 (241)
Q Consensus 80 ~s~~s~~al~~A~~~a~-~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~~~~--- 155 (241)
.++..+.|++.|+++.. ..+.+|+.+++=++ ++++.+..+..+ |++--+.+..
T Consensus 35 in~~D~~AvEeAlrLke~~~~~eV~vlt~Gp~-----------------~a~~~lr~aLAm------GaDraili~d~~~ 91 (260)
T COG2086 35 INPFDLNAVEEALRLKEKGYGGEVTVLTMGPP-----------------QAEEALREALAM------GADRAILITDRAF 91 (260)
T ss_pred cChhhHHHHHHHHHhhccCCCceEEEEEecch-----------------hhHHHHHHHHhc------CCCeEEEEecccc
Confidence 35778899999999998 58899999999654 233333332222 4544444331
Q ss_pred ----CCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeCCCcC-CCCeEEe
Q 026225 156 ----GKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRKSKK-LGGYLIT 230 (241)
Q Consensus 156 ----G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~~~~-~~~~li~ 230 (241)
....+..|...+++.++|||++|...-..-- |-+.-.+......|.+..=.+-.. .+|.++-
T Consensus 92 ~~~d~~~ta~~Laa~~~~~~~~LVl~G~qa~D~~t-------------~qvg~~lAe~Lg~P~~t~v~~i~~~dg~~v~v 158 (260)
T COG2086 92 AGADPLATAKALAAAVKKIGPDLVLTGKQAIDGDT-------------GQVGPLLAELLGWPQVTYVSKIEIVDGGKVTV 158 (260)
T ss_pred cCccHHHHHHHHHHHHHhcCCCEEEEecccccCCc-------------cchHHHHHHHhCCceeeeEEEEEEcCCCeEEE
Confidence 2235667888889999999999976542111 445555566667777766555543 3446665
Q ss_pred cc
Q 026225 231 TK 232 (241)
Q Consensus 231 t~ 232 (241)
|+
T Consensus 159 ~R 160 (260)
T COG2086 159 ER 160 (260)
T ss_pred EE
Confidence 54
No 31
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=89.48 E-value=2.7 Score=33.35 Aligned_cols=113 Identities=17% Similarity=0.201 Sum_probs=64.3
Q ss_pred HHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEEEEEcCCCchHHHH
Q 026225 85 KGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEVAVVEGKEKGPAIV 164 (241)
Q Consensus 85 ~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~~~~G~~~~~~I~ 164 (241)
..||..| .+.+..|..|+|.++...... ........-..+.|..+.+.+.+ ..+...+..|++.. .|.
T Consensus 14 N~aL~~A----~~~~~~v~~vfv~d~~~~~~~---~~~~~r~~Fl~~sL~~L~~~L~~----~g~~L~v~~g~~~~-~l~ 81 (165)
T PF00875_consen 14 NPALHAA----AQNGDPVLPVFVFDPEEFHPY---RIGPRRRRFLLESLADLQESLRK----LGIPLLVLRGDPEE-VLP 81 (165)
T ss_dssp -HHHHHH----HHTTSEEEEEEEE-HHGGTTC---SSCHHHHHHHHHHHHHHHHHHHH----TTS-EEEEESSHHH-HHH
T ss_pred hHHHHHH----HHcCCCeEEEEEecccccccc---cCcchHHHHHHHHHHHHHHHHHh----cCcceEEEecchHH-HHH
Confidence 3455555 456788999999987621110 11222233455556666666655 44567888898655 899
Q ss_pred HHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeCC
Q 026225 165 EEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRK 220 (241)
Q Consensus 165 ~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~ 220 (241)
+++++.+++.|+....- +....-. -.-....+.+..+.+..+...
T Consensus 82 ~l~~~~~~~~V~~~~~~-~~~~~~r----------d~~v~~~l~~~~i~~~~~~~~ 126 (165)
T PF00875_consen 82 ELAKEYGATAVYFNEEY-TPYERRR----------DERVRKALKKHGIKVHTFDDH 126 (165)
T ss_dssp HHHHHHTESEEEEE----SHHHHHH----------HHHHHHHHHHTTSEEEEE--S
T ss_pred HHHHhcCcCeeEecccc-CHHHHHH----------HHHHHHHHHhcceEEEEECCc
Confidence 99999999999987543 3322211 113344455567888777543
No 32
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=88.64 E-value=4.5 Score=32.27 Aligned_cols=64 Identities=23% Similarity=0.327 Sum_probs=48.0
Q ss_pred CccEEEEEEcCCCchHHHHHHH---HHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeCCCc
Q 026225 146 EVQFEVAVVEGKEKGPAIVEEA---RKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRKSK 222 (241)
Q Consensus 146 ~v~v~~~~~~G~~~~~~I~~~a---~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~~~ 222 (241)
|++++..++..+...+.+.+|| ++.++..||-|.-+-..+-++ +...++.||+=||-+++
T Consensus 29 gi~ye~~VvSAHRTPe~m~~ya~~a~~~g~~viIAgAGgAAHLPGm-----------------vAa~T~lPViGVPv~s~ 91 (162)
T COG0041 29 GVPYEVRVVSAHRTPEKMFEYAEEAEERGVKVIIAGAGGAAHLPGM-----------------VAAKTPLPVIGVPVQSK 91 (162)
T ss_pred CCCeEEEEEeccCCHHHHHHHHHHHHHCCCeEEEecCcchhhcchh-----------------hhhcCCCCeEeccCccc
Confidence 8999999998776555777776 467888899988765555433 33467999999999887
Q ss_pred CCCC
Q 026225 223 KLGG 226 (241)
Q Consensus 223 ~~~~ 226 (241)
+.+|
T Consensus 92 ~L~G 95 (162)
T COG0041 92 ALSG 95 (162)
T ss_pred cccc
Confidence 7765
No 33
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=88.00 E-value=5.5 Score=34.16 Aligned_cols=89 Identities=18% Similarity=0.210 Sum_probs=54.6
Q ss_pred CCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEE
Q 026225 71 GRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFE 150 (241)
Q Consensus 71 ~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~ 150 (241)
+++|+|++.+.-+|.-++.++.+. +.++..+|+..+.. . .. -.+.+++.++.. |++..
T Consensus 12 ~~~vlVa~SGGvDSs~ll~la~~~----g~~v~av~~~~~~~--~-------~~-------e~~~a~~~a~~l--gi~~~ 69 (252)
T TIGR00268 12 FKKVLIAYSGGVDSSLLAAVCSDA----GTEVLAITVVSPSI--S-------PR-------ELEDAIIIAKEI--GVNHE 69 (252)
T ss_pred cCCEEEEecCcHHHHHHHHHHHHh----CCCEEEEEecCCCC--C-------HH-------HHHHHHHHHHHc--CCCEE
Confidence 578999999999998788777654 66788999864321 0 00 112223334332 45444
Q ss_pred EEEEc-----------------CCCchHHHHHHHHHcCCcEEEEccCC
Q 026225 151 VAVVE-----------------GKEKGPAIVEEARKQGVALLVLGQKK 181 (241)
Q Consensus 151 ~~~~~-----------------G~~~~~~I~~~a~~~~~dllVmG~~~ 181 (241)
++-.. +...-..+.+.|++.+++.|+-|++.
T Consensus 70 ii~~~~~~~~~~~n~~~~c~~ck~~~~~~l~~~A~~~g~~~I~~G~n~ 117 (252)
T TIGR00268 70 FVKIDKMINPFRANVEERCYFCKKMVLSILVKEAEKRGYDVVVDGTNA 117 (252)
T ss_pred EEEcHHHHHHHHhCCCcccchhhHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 33221 11122356678889999999999754
No 34
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=87.37 E-value=5.5 Score=34.52 Aligned_cols=104 Identities=13% Similarity=0.023 Sum_probs=63.9
Q ss_pred CCHHHHHHHHHHHHhhccCC-CEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEEEEEc---
Q 026225 80 SSNEAKGALQWSLTHTVQSQ-DKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEVAVVE--- 155 (241)
Q Consensus 80 ~s~~s~~al~~A~~~a~~~~-~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~~~~--- 155 (241)
.++..++||+.|+++..+.+ .+|++|.+=++.. ...+.+.++..+ |.+--+.+..
T Consensus 34 iN~~D~~AlE~Alrlke~~~g~~Vtvvs~Gp~~a---------------~~~~~lr~aLAm------GaD~avli~d~~~ 92 (256)
T PRK03359 34 ISQYDLNAIEAACQLKQQAAEAQVTALSVGGKAL---------------TNAKGRKDVLSR------GPDELIVVIDDQF 92 (256)
T ss_pred cChhhHHHHHHHHHHhhhcCCCEEEEEEECCcch---------------hhHHHHHHHHHc------CCCEEEEEecCcc
Confidence 46788999999999998764 7999999966532 111223332222 4433333322
Q ss_pred -C-C--CchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEE
Q 026225 156 -G-K--EKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAV 217 (241)
Q Consensus 156 -G-~--~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV 217 (241)
| + ..+..|-..+++.++|||+.|...-..-. |-+.-.+......|.+-.
T Consensus 93 ~g~D~~~tA~~La~ai~~~~~DLVl~G~~s~D~~t-------------gqvg~~lAe~Lg~P~vt~ 145 (256)
T PRK03359 93 EQALPQQTASALAAAAQKAGFDLILCGDGSSDLYA-------------QQVGLLVGEILNIPAING 145 (256)
T ss_pred cCcCHHHHHHHHHHHHHHhCCCEEEEcCccccCCC-------------CcHHHHHHHHhCCCceee
Confidence 2 1 24557888888889999999976542211 445555555666665443
No 35
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=86.95 E-value=8.7 Score=30.76 Aligned_cols=73 Identities=15% Similarity=0.235 Sum_probs=47.3
Q ss_pred HHHHHHHHHhhCCCccEEEEEEcCCCchHHHHHHHH---HcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhc
Q 026225 133 VHSLKNMCQQKRPEVQFEVAVVEGKEKGPAIVEEAR---KQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQN 209 (241)
Q Consensus 133 l~~~~~~~~~~~~~v~v~~~~~~G~~~~~~I~~~a~---~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~ 209 (241)
++++...++. .|++++..+.--+-..+.+.++++ +.+++.+|.+.-....+-. -+..+
T Consensus 14 ~~~a~~~L~~--~gi~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa~Lpg-----------------vva~~ 74 (156)
T TIGR01162 14 MKKAADILEE--FGIPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAGAGGAAHLPG-----------------MVAAL 74 (156)
T ss_pred HHHHHHHHHH--cCCCeEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeCCccchhHH-----------------HHHhc
Confidence 3344444444 388888888886655446666664 4678888887665444433 34457
Q ss_pred CCceEEEEeCCCcCC
Q 026225 210 ADCMAVAVRRKSKKL 224 (241)
Q Consensus 210 a~~pVlvV~~~~~~~ 224 (241)
++.||+-||......
T Consensus 75 t~~PVIgvP~~~~~l 89 (156)
T TIGR01162 75 TPLPVIGVPVPSKAL 89 (156)
T ss_pred cCCCEEEecCCccCC
Confidence 899999999876533
No 36
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=85.68 E-value=8.4 Score=34.18 Aligned_cols=96 Identities=13% Similarity=0.090 Sum_probs=60.2
Q ss_pred CCCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccE
Q 026225 70 SGRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQF 149 (241)
Q Consensus 70 ~~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v 149 (241)
.+.+++|++.+..+|.-.|..|.......+..+.+||+.....+ .+..+. ....++.+ |+++
T Consensus 26 ~f~~~vv~~SGGKDS~VLL~La~ka~~~~~~~~~vl~iDTG~~F-------------pEt~ef---~d~~a~~~--gl~l 87 (301)
T PRK05253 26 EFENPVMLYSIGKDSSVMLHLARKAFYPGKLPFPLLHVDTGWKF-------------PEMIEF---RDRRAKEL--GLEL 87 (301)
T ss_pred hCCCEEEEecCCHHHHHHHHHHHHhhcccCCCeeEEEEeCCCCC-------------HHHHHH---HHHHHHHh--CCCE
Confidence 35789999999999998888876655443557889999654321 111222 22233333 5666
Q ss_pred EEEEEc-----CCC-------------chHHHHHHHHHcCCcEEEEccCCCC
Q 026225 150 EVAVVE-----GKE-------------KGPAIVEEARKQGVALLVLGQKKRS 183 (241)
Q Consensus 150 ~~~~~~-----G~~-------------~~~~I~~~a~~~~~dllVmG~~~~~ 183 (241)
.+.... |.. ....+.++++++++|.++.|.+...
T Consensus 88 ~v~~~~~~i~~g~~~~~~~~~~cC~~lK~~pL~~al~e~g~da~~~G~RrDE 139 (301)
T PRK05253 88 IVHSNPEGIARGINPFRHGSAKHTNAMKTEGLKQALEKYGFDAAFGGARRDE 139 (301)
T ss_pred EEEeChHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEEeccccch
Confidence 554221 210 1135778888999999999987653
No 37
>PRK13820 argininosuccinate synthase; Provisional
Probab=85.48 E-value=11 Score=34.80 Aligned_cols=91 Identities=15% Similarity=0.116 Sum_probs=57.6
Q ss_pred CCCEEEEeecCCHHHHHHHHHHHHhhccCCC-EEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCcc
Q 026225 70 SGRKIMIVVDSSNEAKGALQWSLTHTVQSQD-KVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQ 148 (241)
Q Consensus 70 ~~~~ILVavD~s~~s~~al~~A~~~a~~~~~-~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~ 148 (241)
|+++|+|++.+.-+|.-++.|+.+. .+. +|..+|+..... . +-++.+++.|... |++
T Consensus 1 ~~~kVvvA~SGGvDSsvll~lL~e~---~g~~~Viav~vd~g~~-----~------------~e~~~a~~~a~~l--Gi~ 58 (394)
T PRK13820 1 MMKKVVLAYSGGLDTSVCVPLLKEK---YGYDEVITVTVDVGQP-----E------------EEIKEAEEKAKKL--GDK 58 (394)
T ss_pred CCCeEEEEEeCcHHHHHHHHHHHHh---cCCCEEEEEEEECCCC-----h------------HHHHHHHHHHHHc--CCC
Confidence 4679999999999999888887542 353 899999965311 0 0122233444432 444
Q ss_pred EEEEEE-------------------cC---------CCchHHHHHHHHHcCCcEEEEccCCC
Q 026225 149 FEVAVV-------------------EG---------KEKGPAIVEEARKQGVALLVLGQKKR 182 (241)
Q Consensus 149 v~~~~~-------------------~G---------~~~~~~I~~~a~~~~~dllVmG~~~~ 182 (241)
+.++-+ +| ......+++.|++.+++.|+-|+.++
T Consensus 59 ~~vvd~~eef~~~~i~~~i~~n~~~~gYpl~~~~cR~~i~~~l~e~A~e~G~~~IA~G~t~~ 120 (394)
T PRK13820 59 HYTIDAKEEFAKDYIFPAIKANALYEGYPLGTALARPLIAEKIVEVAEKEGASAIAHGCTGK 120 (394)
T ss_pred EEEEeCHHHHHHHHHHHHHHhCccccCCcCcHHHHHHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 332211 11 11234688899999999999999665
No 38
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=85.42 E-value=18 Score=29.14 Aligned_cols=79 Identities=14% Similarity=0.114 Sum_probs=45.8
Q ss_pred CCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEEEEEc----
Q 026225 80 SSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEVAVVE---- 155 (241)
Q Consensus 80 ~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~~~~---- 155 (241)
..+.+..++..|.+++. .+.++..+.+-.+. .+.+ +..+ .. .|++--..+-.
T Consensus 17 l~~~~~e~l~~A~~l~~-~~~~v~~v~~G~~~--------------~~~~---~~~~---~~---~Gad~v~~~~~~~~~ 72 (181)
T cd01985 17 LNPLDLEAVEAALRLKE-YGGEVTALVIGPPA--------------AEVA---LREA---LA---MGADKVLLVEDPALA 72 (181)
T ss_pred cCHhhHHHHHHHHHHhh-cCCeEEEEEECChH--------------HHHH---HHHH---HH---hCCCEEEEEecCccc
Confidence 46677889998888876 45676666552211 1111 1111 11 15544333322
Q ss_pred C---CCchHHHHHHHHHcCCcEEEEccCCC
Q 026225 156 G---KEKGPAIVEEARKQGVALLVLGQKKR 182 (241)
Q Consensus 156 G---~~~~~~I~~~a~~~~~dllVmG~~~~ 182 (241)
. ....+.|.+.+++.++|+|++|....
T Consensus 73 ~~~~~~~a~~l~~~i~~~~p~~Vl~g~t~~ 102 (181)
T cd01985 73 GYDPEATAKALAALIKKEKPDLILAGATSI 102 (181)
T ss_pred CCChHHHHHHHHHHHHHhCCCEEEECCccc
Confidence 1 12245788888998999999998876
No 39
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=84.98 E-value=7.5 Score=30.91 Aligned_cols=73 Identities=12% Similarity=0.129 Sum_probs=43.1
Q ss_pred HHHHHHHHhhCCCccEEEEEEcCCCchHHHHHHHHHc---CCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcC
Q 026225 134 HSLKNMCQQKRPEVQFEVAVVEGKEKGPAIVEEARKQ---GVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNA 210 (241)
Q Consensus 134 ~~~~~~~~~~~~~v~v~~~~~~G~~~~~~I~~~a~~~---~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a 210 (241)
+++...+++. |+.++..+.-.+-..+.+.+++++. +++.+|.++-....+- --+..++
T Consensus 17 ~~a~~~L~~~--gi~~~~~V~saHR~p~~l~~~~~~~~~~~~~viIa~AG~~a~Lp-----------------gvva~~t 77 (150)
T PF00731_consen 17 EEAAKTLEEF--GIPYEVRVASAHRTPERLLEFVKEYEARGADVIIAVAGMSAALP-----------------GVVASLT 77 (150)
T ss_dssp HHHHHHHHHT--T-EEEEEE--TTTSHHHHHHHHHHTTTTTESEEEEEEESS--HH-----------------HHHHHHS
T ss_pred HHHHHHHHHc--CCCEEEEEEeccCCHHHHHHHHHHhccCCCEEEEEECCCcccch-----------------hhheecc
Confidence 3444445443 7888888888776556788887764 5687777655444443 3344578
Q ss_pred CceEEEEeCCCcCCC
Q 026225 211 DCMAVAVRRKSKKLG 225 (241)
Q Consensus 211 ~~pVlvV~~~~~~~~ 225 (241)
+.||+-||....+..
T Consensus 78 ~~PVIgvP~~~~~~~ 92 (150)
T PF00731_consen 78 TLPVIGVPVSSGYLG 92 (150)
T ss_dssp SS-EEEEEE-STTTT
T ss_pred CCCEEEeecCccccc
Confidence 999999987765443
No 40
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=84.07 E-value=7.3 Score=31.88 Aligned_cols=34 Identities=21% Similarity=0.198 Sum_probs=26.4
Q ss_pred CCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEE
Q 026225 71 GRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLV 105 (241)
Q Consensus 71 ~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~Ll 105 (241)
.+||++++-++..+.++.++...+. +.+.+|.++
T Consensus 1 ~k~Ill~vtGsiaa~~~~~li~~L~-~~g~~V~vv 34 (182)
T PRK07313 1 MKNILLAVSGSIAAYKAADLTSQLT-KRGYQVTVL 34 (182)
T ss_pred CCEEEEEEeChHHHHHHHHHHHHHH-HCCCEEEEE
Confidence 3789999999999999888876664 456666544
No 41
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=82.32 E-value=20 Score=33.14 Aligned_cols=94 Identities=20% Similarity=0.227 Sum_probs=57.4
Q ss_pred cCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCC-C--chhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEEEEEc
Q 026225 79 DSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQA-T--GEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEVAVVE 155 (241)
Q Consensus 79 D~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~-~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~~~~ 155 (241)
|.--....||..|+.. +.+|..|+|.++...... . ..........-..+-|.++.+.+... |+. ..+..
T Consensus 10 DLRl~DN~aL~~A~~~----~~~vl~vfi~dp~~~~~~~~~~~~~~~~~r~~Fl~esL~~L~~~L~~~--g~~--L~v~~ 81 (429)
T TIGR02765 10 DLRVHDNPALYKASSS----SDTLIPLYCFDPRQFKLTHFFGFPKTGPARGKFLLESLKDLRTSLRKL--GSD--LLVRS 81 (429)
T ss_pred CCccccHHHHHHHHhc----CCeEEEEEEECchHhccccccccCCCCHHHHHHHHHHHHHHHHHHHHc--CCC--eEEEe
Confidence 4433445577777654 357999999987542210 0 00112223344455566666666653 444 46678
Q ss_pred CCCchHHHHHHHHHcCCcEEEEccCC
Q 026225 156 GKEKGPAIVEEARKQGVALLVLGQKK 181 (241)
Q Consensus 156 G~~~~~~I~~~a~~~~~dllVmG~~~ 181 (241)
|++.. .|.+++++.+++.|+.-..-
T Consensus 82 G~~~~-vl~~L~~~~~~~~V~~~~~~ 106 (429)
T TIGR02765 82 GKPED-VLPELIKELGVRTVFLHQEV 106 (429)
T ss_pred CCHHH-HHHHHHHHhCCCEEEEeccC
Confidence 98765 99999999999999997544
No 42
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=81.47 E-value=11 Score=31.18 Aligned_cols=34 Identities=15% Similarity=0.098 Sum_probs=25.2
Q ss_pred CEEEEeecCCHHHHHHH-HHHHHhhccCCCEEEEEE
Q 026225 72 RKIMIVVDSSNEAKGAL-QWSLTHTVQSQDKVVLVY 106 (241)
Q Consensus 72 ~~ILVavD~s~~s~~al-~~A~~~a~~~~~~l~Llh 106 (241)
++|++++-++..+.+++ +.. +...+.+.+|.++-
T Consensus 1 ~~I~lgITGs~~a~~a~~~ll-~~L~~~g~~V~vI~ 35 (187)
T TIGR02852 1 KRIGFGLTGSHCTLEAVMPQL-EKLVDEGAEVTPIV 35 (187)
T ss_pred CEEEEEEecHHHHHHHHHHHH-HHHHhCcCEEEEEE
Confidence 57999999999999997 554 44456677765544
No 43
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=81.24 E-value=19 Score=28.45 Aligned_cols=85 Identities=11% Similarity=0.166 Sum_probs=49.8
Q ss_pred EEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEEE
Q 026225 73 KIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEVA 152 (241)
Q Consensus 73 ~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~ 152 (241)
+|+|++.+..+|.-++.++.+ .+.++..+|+..... . . ... +.++..++.. + +. .
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~----~~~~v~~~~~~~~~~--~------~-~~~-------~~~~~~~~~~--g-~~--~ 55 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKK----EGYEVHALSFDYGQR--H------A-KEE-------EAAKLIAEKL--G-PS--T 55 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHH----cCCcEEEEEEECCCC--C------h-hHH-------HHHHHHHHHH--C-CC--E
Confidence 588999999999888777655 245788888864321 0 0 001 1122222222 2 11 1
Q ss_pred EEcCCCc--hHHHHHHHHHcCCcEEEEccCCC
Q 026225 153 VVEGKEK--GPAIVEEARKQGVALLVLGQKKR 182 (241)
Q Consensus 153 ~~~G~~~--~~~I~~~a~~~~~dllVmG~~~~ 182 (241)
.+.+... ...+.++|++.+++.|++|.+..
T Consensus 56 ~~~~~~~~~~~~l~~~a~~~g~~~i~~G~~~~ 87 (169)
T cd01995 56 YVPARNLIFLSIAAAYAEALGAEAIIIGVNAE 87 (169)
T ss_pred EEeCcCHHHHHHHHHHHHHCCCCEEEEeeccC
Confidence 1222322 22567778899999999998874
No 44
>PLN00200 argininosuccinate synthase; Provisional
Probab=80.88 E-value=46 Score=30.84 Aligned_cols=91 Identities=15% Similarity=0.164 Sum_probs=58.1
Q ss_pred CCCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccE
Q 026225 70 SGRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQF 149 (241)
Q Consensus 70 ~~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v 149 (241)
|.++|+|++.+.-+|.-++.|+.+. .+.+|+.+++..... .+-++.++..|... |++.
T Consensus 4 ~~~kVvva~SGGlDSsvla~~L~e~---~G~eViav~id~Gq~-----------------~~el~~a~~~A~~l--Gi~~ 61 (404)
T PLN00200 4 KLNKVVLAYSGGLDTSVILKWLREN---YGCEVVCFTADVGQG-----------------IEELEGLEAKAKAS--GAKQ 61 (404)
T ss_pred CCCeEEEEEeCCHHHHHHHHHHHHh---hCCeEEEEEEECCCC-----------------hHHHHHHHHHHHHc--CCCE
Confidence 4579999999999999888888652 366899999865421 01123333344332 3321
Q ss_pred -EEE------------------------EEcCC-----CchHHHHHHHHHcCCcEEEEccCCC
Q 026225 150 -EVA------------------------VVEGK-----EKGPAIVEEARKQGVALLVLGQKKR 182 (241)
Q Consensus 150 -~~~------------------------~~~G~-----~~~~~I~~~a~~~~~dllVmG~~~~ 182 (241)
.+. ...+. .....+++.|++.+++.|+=|+.++
T Consensus 62 ~~v~dl~~ef~~~~i~p~i~~Na~ye~~Y~~~tsl~Rp~i~~~lv~~A~~~G~~~VahG~tgk 124 (404)
T PLN00200 62 LVVKDLREEFVRDYIFPCLRANAIYEGKYLLGTSMARPLIAKAMVDIAKEVGADAVAHGATGK 124 (404)
T ss_pred EEEEeCHHHHHHhhcCHHHHcCCcccceeccccchhhHHHHHHHHHHHHHcCCCEEEeCCcCC
Confidence 111 11111 1245789999999999999998875
No 45
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=79.91 E-value=25 Score=27.05 Aligned_cols=99 Identities=13% Similarity=0.267 Sum_probs=56.4
Q ss_pred EEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEEE
Q 026225 73 KIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEVA 152 (241)
Q Consensus 73 ~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~ 152 (241)
+|+|++.+..+|.-++..+.+..... .++.++|+..... ..+..+. ++..++.. |+++...
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~~-~~~~~v~~dtg~~-------------~~~~~~~---~~~~~~~~--g~~~~~~ 61 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPEL-KPVPVIFLDTGYE-------------FPETYEF---VDRVAERY--GLPLVVV 61 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcccc-cCceEEEeCCCCC-------------CHHHHHH---HHHHHHHh--CCCeEEE
Confidence 48899999999987777776654332 3677888754321 0111122 22233322 4444333
Q ss_pred EEcCC-------------------------CchHHHHHHHHHcCCcEEEEccCCCCchhhHhh
Q 026225 153 VVEGK-------------------------EKGPAIVEEARKQGVALLVLGQKKRSTTWRLFM 190 (241)
Q Consensus 153 ~~~G~-------------------------~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~ 190 (241)
..... -....+.+++++.+.+.+++|.+..-...+..+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~K~~~~~~~~~~~~~~~~~~G~r~de~~~r~~~ 124 (173)
T cd01713 62 RPPDSPAEGLALGLKGFPLPSPDRRWCCRILKVEPLRRALKELGVVAWITGIRRDESARRALL 124 (173)
T ss_pred CCCccHHHHHHHhhhccCCccccHHHhhccccchHHHHHHHhcCCeEEEEEeccccchhhhhC
Confidence 22111 112356677777889999999988755555543
No 46
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type. This model describes a narrow clade of cyanobacterial deoxyribodipyrimidine photo-lyase. This group, in contrast to several closely related proteins, uses a chromophore that, in other lineages is modified further to become coenzyme F420. This chromophore is called 8-HDF in most articles on the DNA photolyase and FO in most literature on coenzyme F420.
Probab=79.85 E-value=9 Score=36.09 Aligned_cols=86 Identities=16% Similarity=0.167 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEEEEEcCCCchHH
Q 026225 83 EAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEVAVVEGKEKGPA 162 (241)
Q Consensus 83 ~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~~~~G~~~~~~ 162 (241)
....||..|+. .+..|..|+++++....... ..........+-|..+.+.+... |++ ..+..|++.. .
T Consensus 14 ~DN~AL~~A~~----~~~~vl~vfi~dp~~~~~~~---~~~~r~~Fl~esL~~L~~~L~~~--G~~--L~v~~G~p~~-v 81 (471)
T TIGR03556 14 SDNIGLAAARQ----QSAKVVGLFCLDPNILQADD---MAPARVAYLIGCLQELQQRYQQA--GSQ--LLILQGDPVQ-L 81 (471)
T ss_pred chHHHHHHHHh----cCCCEEEEEEEchhhhcccc---CCHHHHHHHHHHHHHHHHHHHHC--CCC--eEEEECCHHH-H
Confidence 44457776664 34579999999875321111 11111234455566666666553 444 4667898766 9
Q ss_pred HHHHHHHcCCcEEEEccC
Q 026225 163 IVEEARKQGVALLVLGQK 180 (241)
Q Consensus 163 I~~~a~~~~~dllVmG~~ 180 (241)
|.+++++.+++.|+.-..
T Consensus 82 l~~l~~~~~~~~V~~~~~ 99 (471)
T TIGR03556 82 IPQLAQQLGAKAVYWNLD 99 (471)
T ss_pred HHHHHHHcCCCEEEEecc
Confidence 999999999999998654
No 47
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=79.70 E-value=19 Score=29.35 Aligned_cols=88 Identities=16% Similarity=0.195 Sum_probs=52.5
Q ss_pred EEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEEEE
Q 026225 74 IMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEVAV 153 (241)
Q Consensus 74 ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~~ 153 (241)
|+|++.+..+|..++.++.+.. +.++..+|+..... . .+..+.++..|+.. |++..+.-
T Consensus 1 vvva~SGG~DS~~ll~ll~~~~---~~~v~~v~vd~g~~---------~-------~~~~~~~~~~a~~l--gi~~~~~~ 59 (202)
T cd01990 1 VAVAFSGGVDSTLLLKAAVDAL---GDRVLAVTATSPLF---------P-------RRELEEAKRLAKEI--GIRHEVIE 59 (202)
T ss_pred CEEEccCCHHHHHHHHHHHHHh---CCcEEEEEeCCCCC---------C-------HHHHHHHHHHHHHc--CCcEEEEe
Confidence 6889999999988887776643 22788888864421 0 01123334444442 45444332
Q ss_pred Ec------------------CCCchHHHHHHHHHcCCcEEEEccCCC
Q 026225 154 VE------------------GKEKGPAIVEEARKQGVALLVLGQKKR 182 (241)
Q Consensus 154 ~~------------------G~~~~~~I~~~a~~~~~dllVmG~~~~ 182 (241)
.. ....-..+.++|++.+++.|+.|.+..
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~a~~~g~~~I~~G~~~d 106 (202)
T cd01990 60 TDELDDPEFAKNPPDRCYLCKKALYEALKEIAEELGLDVVLDGTNAD 106 (202)
T ss_pred CCccccHHHhcCCCCccchhHHHHHHHHHHHHHHCCCCEEEEcCccc
Confidence 22 011122556788899999999997653
No 48
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=78.33 E-value=16 Score=29.68 Aligned_cols=33 Identities=21% Similarity=0.204 Sum_probs=24.7
Q ss_pred CEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEE
Q 026225 72 RKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLV 105 (241)
Q Consensus 72 ~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~Ll 105 (241)
++|+|++-++..+.+++++...+ .+.+.+|.++
T Consensus 1 k~I~lgvtGs~~a~~~~~ll~~L-~~~g~~V~vi 33 (177)
T TIGR02113 1 KKILLAVTGSIAAYKAADLTSQL-TKLGYDVTVL 33 (177)
T ss_pred CEEEEEEcCHHHHHHHHHHHHHH-HHCCCEEEEE
Confidence 58999999999998888776555 4556665544
No 49
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=78.32 E-value=33 Score=27.39 Aligned_cols=35 Identities=9% Similarity=-0.033 Sum_probs=28.6
Q ss_pred EEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCC
Q 026225 73 KIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPS 111 (241)
Q Consensus 73 ~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~ 111 (241)
+|+|++.+.-+|.-++.++.+ .+.+++.+|+....
T Consensus 1 ~vlv~~SGG~DS~~la~ll~~----~g~~v~av~~d~g~ 35 (177)
T cd01712 1 KALALLSGGIDSPVAAWLLMK----RGIEVDALHFNSGP 35 (177)
T ss_pred CEEEEecCChhHHHHHHHHHH----cCCeEEEEEEeCCC
Confidence 489999999999988888766 37889999997654
No 50
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=78.25 E-value=13 Score=29.97 Aligned_cols=70 Identities=13% Similarity=0.149 Sum_probs=44.2
Q ss_pred HHHHHHHHHhhCCCccEEEE--EEcCCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcC
Q 026225 133 VHSLKNMCQQKRPEVQFEVA--VVEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNA 210 (241)
Q Consensus 133 l~~~~~~~~~~~~~v~v~~~--~~~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a 210 (241)
++++.+.+...+|++++.-. -..+......|++.+++.++|+|++|--. +.++.+ +.+..++.
T Consensus 59 ~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~~pdiv~vglG~--PkQE~~-------------~~~~~~~l 123 (171)
T cd06533 59 LEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINASGADILFVGLGA--PKQELW-------------IARHKDRL 123 (171)
T ss_pred HHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEECCC--CHHHHH-------------HHHHHHHC
Confidence 34444555555688887642 22244444568999999999999998543 333433 25566666
Q ss_pred CceEEEE
Q 026225 211 DCMAVAV 217 (241)
Q Consensus 211 ~~pVlvV 217 (241)
+.+|++.
T Consensus 124 ~~~v~~~ 130 (171)
T cd06533 124 PVPVAIG 130 (171)
T ss_pred CCCEEEE
Confidence 7776665
No 51
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=77.33 E-value=11 Score=33.34 Aligned_cols=74 Identities=18% Similarity=0.265 Sum_probs=43.0
Q ss_pred HHHHHHHhhCCCccEE--EEEEcCCCchHHHHHHHHHc-------CCcEEEEccCCCCchhhHh-hhhcCCCCCCCCHHH
Q 026225 135 SLKNMCQQKRPEVQFE--VAVVEGKEKGPAIVEEARKQ-------GVALLVLGQKKRSTTWRLF-MMWAGNRVPGGSFVE 204 (241)
Q Consensus 135 ~~~~~~~~~~~~v~v~--~~~~~G~~~~~~I~~~a~~~-------~~dllVmG~~~~~~~~~~l-~~~~~~~~~~Gsv~~ 204 (241)
.+...+....|.+++. ...+.|......|++.++.- ++|.||++.-| |....+. | | --..-
T Consensus 30 D~~~~~~~r~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGG-Gs~eDL~~F----N----~e~va 100 (319)
T PF02601_consen 30 DFLRTLKRRNPIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGG-GSIEDLWAF----N----DEEVA 100 (319)
T ss_pred HHHHHHHHhCCCcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCC-CChHHhccc----C----hHHHH
Confidence 3334344344455554 45666888777888877654 48999998555 4333321 1 0 22333
Q ss_pred HHHhcCCceEEEE
Q 026225 205 YCIQNADCMAVAV 217 (241)
Q Consensus 205 ~vi~~a~~pVlvV 217 (241)
.-+..+++||+.=
T Consensus 101 rai~~~~~Pvisa 113 (319)
T PF02601_consen 101 RAIAASPIPVISA 113 (319)
T ss_pred HHHHhCCCCEEEe
Confidence 4556788998753
No 52
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=77.27 E-value=40 Score=31.08 Aligned_cols=117 Identities=11% Similarity=0.118 Sum_probs=63.3
Q ss_pred CCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHH--HHHHHHhhCCCcc
Q 026225 71 GRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHS--LKNMCQQKRPEVQ 148 (241)
Q Consensus 71 ~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~v~ 148 (241)
+++|++++-+|..+.++++++..+. +.+.+|.++-- . .+.+.+.. +...+ +.+
T Consensus 3 ~k~IllgiTGSiaa~~~~~ll~~L~-~~g~~V~vv~T---~----------------~A~~fv~~~~l~~~~-----~~~ 57 (390)
T TIGR00521 3 NKKILLGVTGGIAAYKTVELVRELV-RQGAEVKVIMT---E----------------AAKKFITPLTLEALS-----GHK 57 (390)
T ss_pred CCEEEEEEeCHHHHHHHHHHHHHHH-hCCCEEEEEEC---H----------------hHHHHHHHHHHHHhh-----CCc
Confidence 5799999999999999999887664 45767654431 1 12222221 11111 222
Q ss_pred EEEEEEcCCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeCC
Q 026225 149 FEVAVVEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRK 220 (241)
Q Consensus 149 v~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~ 220 (241)
+...+....... .+ ...-...+|++|+-.-....+.++-. .-. .+....++..+.+|++++|.-
T Consensus 58 v~~~~~~~~~~~-~~-hi~l~~~aD~~vVaPaTanTlaKiA~----Gia--DnLlt~~~~~~~~plviaPam 121 (390)
T TIGR00521 58 VVTELWGPIEHN-AL-HIDLAKWADLILIAPATANTISKIAH----GIA--DDLVSTTALAASAPIILAPAM 121 (390)
T ss_pred eeehhccccccc-cc-hhhcccccCEEEEecCCHHHHHHHHc----ccC--CcHHHHHHHHhCCCEEEEeCC
Confidence 322222111111 11 22222367889888766655655543 111 244444555566999999873
No 53
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=77.26 E-value=37 Score=31.37 Aligned_cols=115 Identities=13% Similarity=0.153 Sum_probs=63.7
Q ss_pred CCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHH--HHHHHHhhCCCcc
Q 026225 71 GRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHS--LKNMCQQKRPEVQ 148 (241)
Q Consensus 71 ~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~v~ 148 (241)
.++|++++-++..+.+++++...+ .+.+.+|.++-- . .+.+.+.. +..+. +.+
T Consensus 6 ~k~IllgvTGsiaa~k~~~lv~~L-~~~g~~V~vv~T---~----------------~A~~fi~~~~l~~l~-----~~~ 60 (399)
T PRK05579 6 GKRIVLGVSGGIAAYKALELVRRL-RKAGADVRVVMT---E----------------AAKKFVTPLTFQALS-----GNP 60 (399)
T ss_pred CCeEEEEEeCHHHHHHHHHHHHHH-HhCCCEEEEEEC---H----------------hHHHHHhHHHHHHhh-----CCc
Confidence 579999999999998898887666 456777654432 1 11111111 11221 223
Q ss_pred EEEEEEcCC-CchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEe
Q 026225 149 FEVAVVEGK-EKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVR 218 (241)
Q Consensus 149 v~~~~~~G~-~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~ 218 (241)
+........ .....=++.++ .+|++|+..-....+.++-. .-. .+....++..+.+|++++|
T Consensus 61 V~~~~~~~~~~~~~~hi~l~~--~aD~~vVaPaTaNtlaKiA~----Gia--Dnllt~~~la~~~pvvi~P 123 (399)
T PRK05579 61 VSTDLWDPAAEAAMGHIELAK--WADLVLIAPATADLIAKLAH----GIA--DDLLTTTLLATTAPVLVAP 123 (399)
T ss_pred eEccccccccCCCcchhhccc--ccCEEEEeeCCHHHHHHHHc----ccC--CcHHHHHHHhcCCCEEEEe
Confidence 322222111 10001223333 58999998766655555543 111 3455556666799999998
No 54
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=77.26 E-value=29 Score=32.92 Aligned_cols=120 Identities=10% Similarity=0.113 Sum_probs=68.0
Q ss_pred CCCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHH--HHHHHHhhCCCc
Q 026225 70 SGRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHS--LKNMCQQKRPEV 147 (241)
Q Consensus 70 ~~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~v 147 (241)
..++|+++|-+|-.+.++++++..+. +.+.+|.++-. . .+.+.+.. +..+ .+.
T Consensus 69 ~~k~IllgVtGsIAayka~~lvr~L~-k~G~~V~VvmT---~----------------sA~~fv~p~~~~~l-----s~~ 123 (475)
T PRK13982 69 ASKRVTLIIGGGIAAYKALDLIRRLK-ERGAHVRCVLT---K----------------AAQQFVTPLTASAL-----SGQ 123 (475)
T ss_pred CCCEEEEEEccHHHHHHHHHHHHHHH-hCcCEEEEEEC---c----------------CHHHHhhHHHHHHh-----cCC
Confidence 46899999999999999999987774 55777655442 1 11111111 1111 133
Q ss_pred cEEEEEEcCCC-chHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeCCCc
Q 026225 148 QFEVAVVEGKE-KGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRKSK 222 (241)
Q Consensus 148 ~v~~~~~~G~~-~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~~~ 222 (241)
++...+..... ..-.=+++++ .+|++|+..-.-..+.++-. .-. .+....++....+|++++|.-..
T Consensus 124 ~V~~d~~~~~~~~~~~Hi~la~--~aD~~vVAPATANTIAKiA~----GiA--DnLlt~v~La~~~PvliaPaMN~ 191 (475)
T PRK13982 124 RVYTDLFDPESEFDAGHIRLAR--DCDLIVVAPATADLMAKMAN----GLA--DDLASAILLAANRPILLAPAMNP 191 (475)
T ss_pred ceEecCCCcccccCccchhhhh--hcCEEEEeeCCHHHHHHHHc----ccc--CcHHHHHHHhcCCCEEEEEcCCH
Confidence 34333322111 0001234444 47999998766665655543 111 23445566667999999986543
No 55
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=77.13 E-value=24 Score=29.37 Aligned_cols=92 Identities=17% Similarity=0.179 Sum_probs=48.0
Q ss_pred CEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEE
Q 026225 72 RKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEV 151 (241)
Q Consensus 72 ~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~ 151 (241)
.++|+.+.+.-+|.-| ..+..+.|.+|..||+..+..... ...+....+...+..+.++.++..
T Consensus 4 gk~l~LlSGGiDSpVA----a~lm~krG~~V~~l~f~~~~~~~~------------~~~~k~~~l~~~l~~~~~~~~~~l 67 (197)
T PF02568_consen 4 GKALALLSGGIDSPVA----AWLMMKRGCEVIALHFDSPPFTGE------------KAREKVEELAEKLSEYSPGHKIRL 67 (197)
T ss_dssp -EEEEE-SSCCHHHHH----HHHHHCBT-EEEEEEEE-TTTSSC------------CCHHHHHHHHHHHHCCSTTS-EEE
T ss_pred ceEEEEecCCccHHHH----HHHHHHCCCEEEEEEEECCCCCCH------------HHHHHHHHHHHHHHHhCCCcceeE
Confidence 5789999888777744 445556799999999985432111 112233444455555444567777
Q ss_pred EEEcCCCchHH---------------------HHHHHHHcCCcEEEEcc
Q 026225 152 AVVEGKEKGPA---------------------IVEEARKQGVALLVLGQ 179 (241)
Q Consensus 152 ~~~~G~~~~~~---------------------I~~~a~~~~~dllVmG~ 179 (241)
.+++-.+.... -.++|++.+++.||-|-
T Consensus 68 ~~v~~~~~~~~i~~~~~~~~~ci~ckr~M~r~A~~ia~~~ga~~IvTGE 116 (197)
T PF02568_consen 68 YVVDFTEVQKEILRGVKERNPCIDCKRFMYRIAEEIAEEEGADAIVTGE 116 (197)
T ss_dssp EEECHHHHHHHHHHHS-GGGHHHHHHHHHHHHHHHHHHHTT--EEE---
T ss_pred EEECcHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHCCCCEEEeCc
Confidence 66652111111 12567789999999884
No 56
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=76.34 E-value=61 Score=29.52 Aligned_cols=37 Identities=14% Similarity=0.141 Sum_probs=29.8
Q ss_pred CCCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcC
Q 026225 70 SGRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKP 110 (241)
Q Consensus 70 ~~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~ 110 (241)
...++||++.+.-+|.-|+.++.. .|.++..+|+...
T Consensus 171 ~~~kvlvllSGGiDS~vaa~ll~k----rG~~V~av~~~~~ 207 (371)
T TIGR00342 171 TQGKVLALLSGGIDSPVAAFMMMK----RGCRVVAVHFFNE 207 (371)
T ss_pred cCCeEEEEecCCchHHHHHHHHHH----cCCeEEEEEEeCC
Confidence 578999999999999877766644 3789999999743
No 57
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=76.24 E-value=24 Score=29.03 Aligned_cols=93 Identities=14% Similarity=0.169 Sum_probs=50.6
Q ss_pred EEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEEE
Q 026225 73 KIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEVA 152 (241)
Q Consensus 73 ~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~ 152 (241)
+++|++.+..+|..++.+|.+ .+.++..|++..+..... .+... .-++.++.+++. .|++....
T Consensus 1 kv~v~~SGGkDS~~al~~a~~----~G~~v~~l~~~~~~~~~~----~~~h~------~~~e~~~~~A~~--lgipl~~i 64 (194)
T cd01994 1 KVVALISGGKDSCYALYRALE----EGHEVVALLNLTPEEGSS----MMYHT------VNHELLELQAEA--MGIPLIRI 64 (194)
T ss_pred CEEEEecCCHHHHHHHHHHHH----cCCEEEEEEEEecCCCCc----ccccc------cCHHHHHHHHHH--cCCcEEEE
Confidence 478999999999988888877 356777777665432111 00000 011223333443 26776554
Q ss_pred EEcCC------CchHHHHHHHHHcCCcEEEEccCCC
Q 026225 153 VVEGK------EKGPAIVEEARKQGVALLVLGQKKR 182 (241)
Q Consensus 153 ~~~G~------~~~~~I~~~a~~~~~dllVmG~~~~ 182 (241)
-..+. .....|.+.+++ +++.||-|..-.
T Consensus 65 ~~~~~~e~~~~~l~~~l~~~~~~-g~~~vv~G~i~s 99 (194)
T cd01994 65 EISGEEEDEVEDLKELLRKLKEE-GVDAVVFGAILS 99 (194)
T ss_pred eCCCCchHHHHHHHHHHHHHHHc-CCCEEEECcccc
Confidence 43331 112123333333 699999998653
No 58
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=75.28 E-value=65 Score=29.33 Aligned_cols=93 Identities=15% Similarity=0.187 Sum_probs=56.9
Q ss_pred CCCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccE
Q 026225 70 SGRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQF 149 (241)
Q Consensus 70 ~~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v 149 (241)
+.++|+|++.+.-+|.-++..+.+ .+.++..+|+...... . ..+.++.+++.|+.. |++.
T Consensus 4 ~~~kVlValSGGVDSsvaa~LL~~----~G~~V~~v~~~~~~~~-~-------------~~~d~~~a~~va~~L--gIp~ 63 (360)
T PRK14665 4 KNKRVLLGMSGGTDSSVAAMLLLE----AGYEVTGVTFRFYEFN-G-------------STEYLEDARALAERL--GIGH 63 (360)
T ss_pred CCCEEEEEEcCCHHHHHHHHHHHH----cCCeEEEEEEecCCCC-C-------------ChHHHHHHHHHHHHh--CCCE
Confidence 357899999999888877666654 3678888888642210 0 011233445555553 5554
Q ss_pred EEEEEc-----------------CCC-----------chHHHHHHHHHcCCcEEEEccCCC
Q 026225 150 EVAVVE-----------------GKE-----------KGPAIVEEARKQGVALLVLGQKKR 182 (241)
Q Consensus 150 ~~~~~~-----------------G~~-----------~~~~I~~~a~~~~~dllVmG~~~~ 182 (241)
.+.-.. |.. .-..+.++|++.+++.|+.|...+
T Consensus 64 ~vvd~~~~f~~~v~~~f~~~y~~g~tpnpC~~Cnr~ikf~~l~~~A~~~G~~~IATGHya~ 124 (360)
T PRK14665 64 ITYDARKVFRKQIIDYFIDEYMSGHTPVPCTLCNNYLKWPLLAKIADEMGIFYLATGHYVR 124 (360)
T ss_pred EEEecHHHHHHHHHhhhhhHHhccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCccc
Confidence 433221 221 112567888899999999997653
No 59
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=75.11 E-value=8.1 Score=33.71 Aligned_cols=93 Identities=12% Similarity=0.157 Sum_probs=54.9
Q ss_pred EEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEEE
Q 026225 73 KIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEVA 152 (241)
Q Consensus 73 ~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~ 152 (241)
+|-|.+.-...++.-++-|-++....++. .++|+..|+.+ ..+.+...+++.++... -.+..+
T Consensus 4 kIGivTgtvSq~ed~~r~Ae~l~~~Yg~~-~I~h~tyPdnf------------~~e~EttIskI~~lAdD----p~mKaI 66 (275)
T PF12683_consen 4 KIGIVTGTVSQSEDEYRGAEELIKKYGDV-MIKHVTYPDNF------------MSEQETTISKIVSLADD----PDMKAI 66 (275)
T ss_dssp EEEEEE--TTT-HHHHHHHHHHHHHHHHH-EEEEEE--TTG------------GGCHHHHHHHHHGGGG-----TTEEEE
T ss_pred EEEEEeCCcccChHHHHHHHHHHHHhCcc-eEEEEeCCCcc------------cchHHHHHHHHHHhccC----CCccEE
Confidence 56677776666666777777777777655 88999888764 33566677777777664 344444
Q ss_pred EEc-CCCchHHHHHHHHHcCCcEEEEccCCC
Q 026225 153 VVE-GKEKGPAIVEEARKQGVALLVLGQKKR 182 (241)
Q Consensus 153 ~~~-G~~~~~~I~~~a~~~~~dllVmG~~~~ 182 (241)
++. +.+---.-.+-+++.++|+|.+.....
T Consensus 67 Vv~q~vpGt~~af~kIkekRpDIl~ia~~~~ 97 (275)
T PF12683_consen 67 VVSQAVPGTAEAFRKIKEKRPDILLIAGEPH 97 (275)
T ss_dssp EEE-SS---HHHHHHHHHH-TTSEEEESS--
T ss_pred EEeCCCcchHHHHHHHHhcCCCeEEEcCCCc
Confidence 444 333223556777888999999986643
No 60
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=74.42 E-value=18 Score=36.46 Aligned_cols=145 Identities=14% Similarity=0.215 Sum_probs=79.8
Q ss_pred CCCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCC-CCchhhHhhhhHHHHHHHHHHHHHHHhhCCCcc
Q 026225 70 SGRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQ-ATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQ 148 (241)
Q Consensus 70 ~~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~ 148 (241)
...+|.+-.=+..+.+.|+.++..++.++...+++++.+....... .......+...+.....+- +...+.. .++.
T Consensus 613 ~~~~v~~lF~GG~DDrEALa~~~rm~~~~~v~lTVirf~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~-~~i~ 689 (769)
T KOG1650|consen 613 SSYKVVVLFLGGKDDREALALAKRMAENPRVTLTVIRFFPDESKYNRKVLVEVGKMLDQEGLEDFV--KSTRESN-LDII 689 (769)
T ss_pred ceeEEEEEecCChhhHHHHHHHHHHhhCCceEEEEEEeeccchhhcccccchhhhhhhhhHHHHHH--HHhhhch-hhhh
Confidence 3456666666777888899999999999999999999988553111 1111122222221111110 1111100 0111
Q ss_pred E--EEEEEcCCCchHHHHHHHHHcCCcEEEEccCCC--CchhhHhhhhcCCCC--CCCCH-HHHHHhcCCceEEEEeCC
Q 026225 149 F--EVAVVEGKEKGPAIVEEARKQGVALLVLGQKKR--STTWRLFMMWAGNRV--PGGSF-VEYCIQNADCMAVAVRRK 220 (241)
Q Consensus 149 v--~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~~--~~~~~~l~~~~~~~~--~~Gsv-~~~vi~~a~~pVlvV~~~ 220 (241)
. |..+..|.+.. .+++...+ ++|++++|.... +..-..+.+|-.-.. ..|.. +..-. ++...|+++...
T Consensus 690 ~~~ek~v~~~~et~-~~~~~~~~-~ydL~ivGr~~~~~~~~t~gl~~W~e~pELg~IGd~las~~~-~~~~svlvvqq~ 765 (769)
T KOG1650|consen 690 YAEEKIVLNGAETT-ALLRSITE-DYDLFIVGRSHGMLSEATGGLSEWSECPELGVIGDLLASSDF-SSKVSVLVVQQQ 765 (769)
T ss_pred hhhHHHHhcchhHH-HHHHHhcc-ccceEEEecccccccchhcCchhcccCccccccCcccccccc-CccceEEEEEee
Confidence 1 35556677666 56666655 899999997643 223344556665432 23543 22222 566777777543
No 61
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=72.92 E-value=12 Score=30.18 Aligned_cols=70 Identities=10% Similarity=0.112 Sum_probs=43.3
Q ss_pred HHHHHHHHHhhCCCccEEEEEEc--CCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcC
Q 026225 133 VHSLKNMCQQKRPEVQFEVAVVE--GKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNA 210 (241)
Q Consensus 133 l~~~~~~~~~~~~~v~v~~~~~~--G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a 210 (241)
++++.+.+...+|++++.-...- ...-.+.|++.+++.++|+|++|--. +.+..+ ..+..++.
T Consensus 61 ~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~vglG~--PkQE~~-------------~~~~~~~l 125 (172)
T PF03808_consen 61 LEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINASGPDIVFVGLGA--PKQERW-------------IARHRQRL 125 (172)
T ss_pred HHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEECCC--CHHHHH-------------HHHHHHHC
Confidence 34455555556678877643321 23345699999999999999998543 233333 25556666
Q ss_pred CceEEEE
Q 026225 211 DCMAVAV 217 (241)
Q Consensus 211 ~~pVlvV 217 (241)
+.+|++.
T Consensus 126 ~~~v~i~ 132 (172)
T PF03808_consen 126 PAGVIIG 132 (172)
T ss_pred CCCEEEE
Confidence 6665443
No 62
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=72.02 E-value=34 Score=24.63 Aligned_cols=79 Identities=14% Similarity=0.193 Sum_probs=50.7
Q ss_pred EEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEEEE
Q 026225 74 IMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEVAV 153 (241)
Q Consensus 74 ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~~ 153 (241)
|+|++.+..+|.-++.++.+.. .++..+|+...... ......+. ++.
T Consensus 1 v~v~~SGG~DS~~ll~~l~~~~----~~~~~~~~~~~~~~-----------~~~~~~~~-------~~~----------- 47 (103)
T cd01986 1 VLVAFSGGKDSSVAAALLKKLG----YQVIAVTVDHGISP-----------RLEDAKEI-------AKE----------- 47 (103)
T ss_pred CEEEEeCcHHHHHHHHHHHHhC----CCEEEEEEcCCCcc-----------cHHHHHHH-------HHH-----------
Confidence 5889999999987777776642 37888888665331 01111111 111
Q ss_pred EcCCCchHHHHHHHHHcCCcEEEEccCCCCchhhHh
Q 026225 154 VEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLF 189 (241)
Q Consensus 154 ~~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l 189 (241)
..-..+.+.+++.+++.|+.|.+........+
T Consensus 48 ----~r~~~~~~~a~~~g~~~i~~g~~~~D~~~~~~ 79 (103)
T cd01986 48 ----AREEAAKRIAKEKGAETIATGTRRDDVANRAL 79 (103)
T ss_pred ----HHHHHHHHHHHHcCCCEEEEcCCcchHHHHHH
Confidence 33447888888899999999987754444433
No 63
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=71.36 E-value=51 Score=29.45 Aligned_cols=94 Identities=10% Similarity=0.083 Sum_probs=57.0
Q ss_pred CCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEE
Q 026225 71 GRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFE 150 (241)
Q Consensus 71 ~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~ 150 (241)
+.+++++..+..+|.-.|..|...+...+..+-+|||-....+ .+..+..+.+ ++.+ |+++.
T Consensus 37 f~~~~v~~SgGKDS~VlLhLa~kaf~~~~~~~pvl~VDTG~~F-------------pEt~efrD~~---a~~~--gl~Li 98 (312)
T PRK12563 37 CSKPVMLYSIGKDSVVMLHLAMKAFRPTRPPFPLLHVDTTWKF-------------REMIDFRDRR---AKEL--GLDLV 98 (312)
T ss_pred cCCcEEEecCChHHHHHHHHHHHhhcccCCCeeEEEeCCCCCC-------------HHHHHHHHHH---HHHh--CCcEE
Confidence 5678899999999998888887766544567889998554331 1222222222 2222 44443
Q ss_pred EEEEc------------------CCCchHHHHHHHHHcCCcEEEEccCCC
Q 026225 151 VAVVE------------------GKEKGPAIVEEARKQGVALLVLGQKKR 182 (241)
Q Consensus 151 ~~~~~------------------G~~~~~~I~~~a~~~~~dllVmG~~~~ 182 (241)
+.... +--+-..+.+.++++++|.+|.|.+..
T Consensus 99 v~~~~~~~~~G~~~~~~~~~~~c~~~Kv~pL~raL~~~g~da~itG~RRd 148 (312)
T PRK12563 99 VHHNPDGIARGIVPFRHGSALHTDVAKTQGLKQALDHHGFDAAIGGARRD 148 (312)
T ss_pred EecChHHHHhCCCcccCCHHHHhhHHhHHHHHHHHHhcCCCEEEEecCHH
Confidence 32100 111223677777888999999998754
No 64
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=70.21 E-value=87 Score=28.94 Aligned_cols=34 Identities=12% Similarity=0.171 Sum_probs=28.3
Q ss_pred EEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcC
Q 026225 73 KIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKP 110 (241)
Q Consensus 73 ~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~ 110 (241)
+|+|++.+.-+|.-++.|+.+. +.+|+.+|+...
T Consensus 1 kVvla~SGGlDSsvll~~l~e~----g~~V~av~id~G 34 (394)
T TIGR00032 1 KVVLAYSGGLDTSVCLKWLREK----GYEVIAYTADVG 34 (394)
T ss_pred CEEEEEcCCHHHHHHHHHHHHc----CCEEEEEEEecC
Confidence 5899999999999889888653 778999999654
No 65
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=69.47 E-value=11 Score=29.38 Aligned_cols=51 Identities=12% Similarity=-0.024 Sum_probs=35.6
Q ss_pred hHHHHHHHHHcCCcEEEEcc-----CCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeCC
Q 026225 160 GPAIVEEARKQGVALLVLGQ-----KKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRK 220 (241)
Q Consensus 160 ~~~I~~~a~~~~~dllVmG~-----~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~ 220 (241)
...|.+++++++++.||+|- ...+...... -.+++.+-.+.++||..+-.+
T Consensus 43 ~~~l~~~i~~~~i~~iVvGlP~~~~G~~~~~~~~v----------~~f~~~L~~~~~~~v~~~DEr 98 (138)
T PRK00109 43 WDRLEKLIKEWQPDGLVVGLPLNMDGTEGPRTERA----------RKFANRLEGRFGLPVVLVDER 98 (138)
T ss_pred HHHHHHHHHHhCCCEEEEeccCCCCCCcCHHHHHH----------HHHHHHHHHHhCCCEEEEcCC
Confidence 45899999999999999993 2222222222 346777777778999998655
No 66
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=68.44 E-value=21 Score=29.09 Aligned_cols=47 Identities=19% Similarity=0.311 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhhCCCccEEEEEEcCC---CchHHHHHHHHHcCCcEEEEccC
Q 026225 132 FVHSLKNMCQQKRPEVQFEVAVVEGK---EKGPAIVEEARKQGVALLVLGQK 180 (241)
Q Consensus 132 ~l~~~~~~~~~~~~~v~v~~~~~~G~---~~~~~I~~~a~~~~~dllVmG~~ 180 (241)
.++++.+.+.+.+|++++... .|. .-.+.|++.+++.++|+|++|--
T Consensus 60 v~~~~~~~l~~~yP~l~i~g~--~g~f~~~~~~~i~~~I~~s~~dil~VglG 109 (177)
T TIGR00696 60 VLQQLKVKLIKEYPKLKIVGA--FGPLEPEERKAALAKIARSGAGIVFVGLG 109 (177)
T ss_pred HHHHHHHHHHHHCCCCEEEEE--CCCCChHHHHHHHHHHHHcCCCEEEEEcC
Confidence 344455555555688887754 443 22357999999999999999844
No 67
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=68.28 E-value=25 Score=32.70 Aligned_cols=76 Identities=14% Similarity=0.267 Sum_probs=43.9
Q ss_pred HHHHHHHHHhhCCCccEE--EEEEcCCCchHHHHHHHHHcC---CcEEEEccCCCCchhhHh-hhhcCCCCCCCCHHHHH
Q 026225 133 VHSLKNMCQQKRPEVQFE--VAVVEGKEKGPAIVEEARKQG---VALLVLGQKKRSTTWRLF-MMWAGNRVPGGSFVEYC 206 (241)
Q Consensus 133 l~~~~~~~~~~~~~v~v~--~~~~~G~~~~~~I~~~a~~~~---~dllVmG~~~~~~~~~~l-~~~~~~~~~~Gsv~~~v 206 (241)
+.++...+....|.+++. ...+.|......|++.++..+ +|.||++.-|. ....+. | | --.....
T Consensus 149 ~~D~~~~~~~r~p~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGG-S~eDL~~F----n----~e~v~~a 219 (438)
T PRK00286 149 IRDILTVLRRRFPLVEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGG-SLEDLWAF----N----DEAVARA 219 (438)
T ss_pred HHHHHHHHHhcCCCCeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCC-CHHHhhcc----C----cHHHHHH
Confidence 344444444444554444 345568877778888776544 59999985554 433331 1 0 2233445
Q ss_pred HhcCCceEEEE
Q 026225 207 IQNADCMAVAV 217 (241)
Q Consensus 207 i~~a~~pVlvV 217 (241)
+.++++||+.-
T Consensus 220 i~~~~~Pvis~ 230 (438)
T PRK00286 220 IAASRIPVISA 230 (438)
T ss_pred HHcCCCCEEEe
Confidence 66789998753
No 68
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=67.91 E-value=83 Score=27.41 Aligned_cols=89 Identities=19% Similarity=0.253 Sum_probs=53.2
Q ss_pred CEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEE
Q 026225 72 RKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEV 151 (241)
Q Consensus 72 ~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~ 151 (241)
.+++||..+.-+|.-.+.-|.+- .|+++..+.|..|.... ...+. +.....+. |++.+.
T Consensus 18 ~kv~vAfSGGvDSslLa~la~~~---lG~~v~AvTv~sP~~p~---------~e~e~-------A~~~A~~i--Gi~H~~ 76 (269)
T COG1606 18 KKVVVAFSGGVDSSLLAKLAKEA---LGDNVVAVTVDSPYIPR---------REIEE-------AKNIAKEI--GIRHEF 76 (269)
T ss_pred CeEEEEecCCccHHHHHHHHHHH---hccceEEEEEecCCCCh---------hhhhH-------HHHHHHHh--CCccee
Confidence 49999999988877555554443 46888888887764410 01111 12222221 333222
Q ss_pred EEE-----------------cCCCchHHHHHHHHHcCCcEEEEccCC
Q 026225 152 AVV-----------------EGKEKGPAIVEEARKQGVALLVLGQKK 181 (241)
Q Consensus 152 ~~~-----------------~G~~~~~~I~~~a~~~~~dllVmG~~~ 181 (241)
.-. ....+-..|++.|.++++|.|+=|++.
T Consensus 77 i~~~~~~~~~~~n~~~rCY~CK~~v~~~l~~~a~~~Gyd~V~dGtNa 123 (269)
T COG1606 77 IKMNRMDPEFKENPENRCYLCKRAVYSTLVEEAEKRGYDVVADGTNA 123 (269)
T ss_pred eehhhcchhhccCCCCcchHHHHHHHHHHHHHHHHcCCCEEEeCCcH
Confidence 111 123345689999999999999999753
No 69
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=67.59 E-value=68 Score=26.35 Aligned_cols=96 Identities=18% Similarity=0.184 Sum_probs=52.3
Q ss_pred EEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEEEE
Q 026225 74 IMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEVAV 153 (241)
Q Consensus 74 ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~~ 153 (241)
++|.-.+.-..-.+...|..+..+ +.+|.|+..-. .. --+. ++++..++.. ++++....
T Consensus 5 ~lvGptGvGKTTt~aKLAa~~~~~-~~~v~lis~D~-~R--------------~ga~---eQL~~~a~~l--~vp~~~~~ 63 (196)
T PF00448_consen 5 ALVGPTGVGKTTTIAKLAARLKLK-GKKVALISADT-YR--------------IGAV---EQLKTYAEIL--GVPFYVAR 63 (196)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEEST-SS--------------THHH---HHHHHHHHHH--TEEEEESS
T ss_pred EEECCCCCchHhHHHHHHHHHhhc-cccceeecCCC-CC--------------ccHH---HHHHHHHHHh--ccccchhh
Confidence 344555666677788888888777 88888888622 11 1233 3334444431 44443322
Q ss_pred EcCCCch--HHHHHHHHHcCCcEEEEccCCCCchhhHhh
Q 026225 154 VEGKEKG--PAIVEEARKQGVALLVLGQKKRSTTWRLFM 190 (241)
Q Consensus 154 ~~G~~~~--~~I~~~a~~~~~dllVmG~~~~~~~~~~l~ 190 (241)
...++.. ...++..+..++|+|++-+-|++....-.+
T Consensus 64 ~~~~~~~~~~~~l~~~~~~~~D~vlIDT~Gr~~~d~~~~ 102 (196)
T PF00448_consen 64 TESDPAEIAREALEKFRKKGYDLVLIDTAGRSPRDEELL 102 (196)
T ss_dssp TTSCHHHHHHHHHHHHHHTTSSEEEEEE-SSSSTHHHHH
T ss_pred cchhhHHHHHHHHHHHhhcCCCEEEEecCCcchhhHHHH
Confidence 2222222 123344556789999999999987665443
No 70
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=67.53 E-value=76 Score=26.86 Aligned_cols=91 Identities=13% Similarity=0.163 Sum_probs=52.0
Q ss_pred EEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEEE
Q 026225 73 KIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEVA 152 (241)
Q Consensus 73 ~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~ 152 (241)
++++.+.+..+|..|+.+|.+. .+-+.|+.+.+...... +.... . ++.++.+++. .|+++...
T Consensus 2 kv~vl~SGGKDS~lAl~~~~~~----~~V~~L~~~~~~~~~s~-----~~h~~---~---~~~~~~qA~a--lgiPl~~~ 64 (222)
T TIGR00289 2 KVAVLYSGGKDSILALYKALEE----HEVISLVGVFSENEESY-----MFHSP---N---LHLTDLVAEA--VGIPLIKL 64 (222)
T ss_pred eEEEEecCcHHHHHHHHHHHHc----CeeEEEEEEcCCCCCcc-----ccccC---C---HHHHHHHHHH--cCCCeEEE
Confidence 5788889999999999998773 34455555554322111 00000 0 1112222332 26777655
Q ss_pred EEcCC--CchHHHHHHHHHcCCcEEEEccC
Q 026225 153 VVEGK--EKGPAIVEEARKQGVALLVLGQK 180 (241)
Q Consensus 153 ~~~G~--~~~~~I~~~a~~~~~dllVmG~~ 180 (241)
...|. .--+.+.+.+++.+++-||-|.=
T Consensus 65 ~~~~~~e~~~~~l~~~l~~~gv~~vv~GdI 94 (222)
T TIGR00289 65 YTSGEEEKEVEDLAGQLGELDVEALCIGAI 94 (222)
T ss_pred EcCCchhHHHHHHHHHHHHcCCCEEEECcc
Confidence 55552 22235666677779999999964
No 71
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=66.95 E-value=92 Score=27.59 Aligned_cols=94 Identities=12% Similarity=0.041 Sum_probs=57.4
Q ss_pred CCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEE
Q 026225 71 GRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFE 150 (241)
Q Consensus 71 ~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~ 150 (241)
+.++++++.+..+|.-+|..|.+.+...+..+.+||+-....+ .+..+..+.+ ++.+ |+++.
T Consensus 19 f~~~vv~~SGGKDS~VlLhLa~kaf~~~~~p~~vl~IDTG~~F-------------~Et~efrd~~---a~~~--gl~l~ 80 (294)
T TIGR02039 19 FERPVMLYSIGKDSSVLLHLARKAFYPGPLPFPLLHVDTGWKF-------------REMIAFRDHM---VAKY--GLRLI 80 (294)
T ss_pred cCCcEEEEecChHHHHHHHHHHHHhcccCCCeEEEEEecCCCC-------------HHHHHHHHHH---HHHh--CCCEE
Confidence 4456788999999998887776665443567899999654331 1222333333 2222 45555
Q ss_pred EEEEc-----CC-------------CchHHHHHHHHHcCCcEEEEccCCC
Q 026225 151 VAVVE-----GK-------------EKGPAIVEEARKQGVALLVLGQKKR 182 (241)
Q Consensus 151 ~~~~~-----G~-------------~~~~~I~~~a~~~~~dllVmG~~~~ 182 (241)
+...+ |. -....+.+.++++++|.++.|.+..
T Consensus 81 v~~~~~~~~~g~~~~~~~~~~~c~vlK~~pL~~al~e~g~da~itG~RRD 130 (294)
T TIGR02039 81 VHSNEEGIADGINPFTEGSALHTDIMKTEALRQALDKNQFDAAFGGARRD 130 (294)
T ss_pred EEechhhhhcCccccccChHHHhhHHHHHHHHHHHHHcCCCEEEecCChh
Confidence 43322 21 0113577788889999999998754
No 72
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=66.66 E-value=75 Score=26.48 Aligned_cols=125 Identities=16% Similarity=0.117 Sum_probs=70.2
Q ss_pred EEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEEE
Q 026225 73 KIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEVA 152 (241)
Q Consensus 73 ~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~ 152 (241)
+|.|-+.++-....||-.|+. ....+++|.+|-...+.- .+ ++.++ . .|++....
T Consensus 2 ki~VlaSG~GSNlqaiida~~-~~~~~a~i~~Visd~~~A---------------~~---lerA~----~--~gIpt~~~ 56 (200)
T COG0299 2 KIAVLASGNGSNLQAIIDAIK-GGKLDAEIVAVISDKADA---------------YA---LERAA----K--AGIPTVVL 56 (200)
T ss_pred eEEEEEeCCcccHHHHHHHHh-cCCCCcEEEEEEeCCCCC---------------HH---HHHHH----H--cCCCEEEe
Confidence 677778877666777777776 333466777776654432 11 11111 1 26665443
Q ss_pred EEcCCC----chHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCC---CC------CCC-CHHHHH----HhcCCceE
Q 026225 153 VVEGKE----KGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGN---RV------PGG-SFVEYC----IQNADCMA 214 (241)
Q Consensus 153 ~~~G~~----~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~---~~------~~G-sv~~~v----i~~a~~pV 214 (241)
-....+ .+..|++..+++++|+||+..--+=-...++-.|.++ -+ |.| .+-++. ...+.|.|
T Consensus 57 ~~k~~~~r~~~d~~l~~~l~~~~~dlvvLAGyMrIL~~~fl~~~~grIlNIHPSLLP~f~G~h~~~~A~~aG~k~sG~TV 136 (200)
T COG0299 57 DRKEFPSREAFDRALVEALDEYGPDLVVLAGYMRILGPEFLSRFEGRILNIHPSLLPAFPGLHAHEQALEAGVKVSGCTV 136 (200)
T ss_pred ccccCCCHHHHHHHHHHHHHhcCCCEEEEcchHHHcCHHHHHHhhcceEecCcccccCCCCchHHHHHHHcCCCccCcEE
Confidence 333332 5678999999999999999865442223344444431 11 123 222333 23356888
Q ss_pred EEEeCCCc
Q 026225 215 VAVRRKSK 222 (241)
Q Consensus 215 lvV~~~~~ 222 (241)
-+|-..-.
T Consensus 137 H~V~e~vD 144 (200)
T COG0299 137 HFVTEGVD 144 (200)
T ss_pred EEEccCCC
Confidence 88865544
No 73
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=66.37 E-value=25 Score=27.10 Aligned_cols=52 Identities=12% Similarity=-0.006 Sum_probs=36.6
Q ss_pred chHHHHHHHHHcCCcEEEEc-----cCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeCC
Q 026225 159 KGPAIVEEARKQGVALLVLG-----QKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRK 220 (241)
Q Consensus 159 ~~~~I~~~a~~~~~dllVmG-----~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~ 220 (241)
..+.|.+.+++++++.||+| .-..+..-... -.+++.+-+..++||..+..+
T Consensus 36 ~~~~l~~~i~~~~~~~iVvGlP~~~dG~~~~~a~~v----------~~f~~~L~~~~~~~v~~~DEr 92 (130)
T TIGR00250 36 DWSRIEELLKEWTPDKIVVGLPLNMDGTEGPLTERA----------QKFANRLEGRFGVPVVLWDER 92 (130)
T ss_pred HHHHHHHHHHHcCCCEEEEeccCCCCcCcCHHHHHH----------HHHHHHHHHHhCCCEEEEcCC
Confidence 34589999999999999999 22223222222 346777777779999999655
No 74
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=65.63 E-value=99 Score=27.51 Aligned_cols=37 Identities=16% Similarity=0.190 Sum_probs=28.7
Q ss_pred CEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCC
Q 026225 72 RKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPS 111 (241)
Q Consensus 72 ~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~ 111 (241)
++|+|++.+.-+|.-++.++.+. .+.++..+|+....
T Consensus 17 ~kVvValSGGVDSsvla~ll~~~---~G~~v~av~vd~G~ 53 (311)
T TIGR00884 17 AKVIIALSGGVDSSVAAVLAHRA---IGDRLTCVFVDHGL 53 (311)
T ss_pred CcEEEEecCChHHHHHHHHHHHH---hCCCEEEEEEeCCC
Confidence 78999999998888777666443 35789999997653
No 75
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=63.21 E-value=7.3 Score=28.77 Aligned_cols=21 Identities=19% Similarity=0.447 Sum_probs=18.9
Q ss_pred HHHHHHHHHcCCcEEEEccCC
Q 026225 161 PAIVEEARKQGVALLVLGQKK 181 (241)
Q Consensus 161 ~~I~~~a~~~~~dllVmG~~~ 181 (241)
+.|+++|+++++||+|+|...
T Consensus 52 ~~l~~~a~~~~idlvvvGPE~ 72 (100)
T PF02844_consen 52 EELADFAKENKIDLVVVGPEA 72 (100)
T ss_dssp HHHHHHHHHTTESEEEESSHH
T ss_pred HHHHHHHHHcCCCEEEECChH
Confidence 499999999999999999754
No 76
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=62.80 E-value=94 Score=26.36 Aligned_cols=48 Identities=17% Similarity=0.266 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHhhCCCccEEEEEEcCCCchHHHHHHHHHcCCcEEEEccC
Q 026225 128 RGYEFVHSLKNMCQQKRPEVQFEVAVVEGKEKGPAIVEEARKQGVALLVLGQK 180 (241)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~~v~v~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~ 180 (241)
...+.+.+++++..+. + ++.+.+--|-. . .-...+.+.++|.+|+|+-
T Consensus 152 ~~l~Ki~~lr~~~~~~--~-~~~IeVDGGI~-~-~t~~~~~~AGad~~VaGSa 199 (220)
T COG0036 152 EVLEKIRELRAMIDER--L-DILIEVDGGIN-L-ETIKQLAAAGADVFVAGSA 199 (220)
T ss_pred HHHHHHHHHHHHhccc--C-CeEEEEeCCcC-H-HHHHHHHHcCCCEEEEEEE
Confidence 3444455566666542 4 55555544544 3 4555666779999999983
No 77
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=62.74 E-value=75 Score=25.13 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=20.5
Q ss_pred chHHHHHHHHHcCCcEEEEccCCCC
Q 026225 159 KGPAIVEEARKQGVALLVLGQKKRS 183 (241)
Q Consensus 159 ~~~~I~~~a~~~~~dllVmG~~~~~ 183 (241)
..+.|.+.++++++|+|++|....+
T Consensus 71 ~a~al~~~i~~~~p~~Vl~~~t~~g 95 (168)
T cd01715 71 YAPALVALAKKEKPSHILAGATSFG 95 (168)
T ss_pred HHHHHHHHHHhcCCCEEEECCCccc
Confidence 4557888889989999999988653
No 78
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=61.91 E-value=56 Score=27.00 Aligned_cols=84 Identities=15% Similarity=0.151 Sum_probs=49.7
Q ss_pred EeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEEEEEc
Q 026225 76 IVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEVAVVE 155 (241)
Q Consensus 76 VavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~~~~ 155 (241)
++.-.++.+..+|..+..++.+.++++..+.+-.. ...+..+.+ ..+ |+.-.+.+-.
T Consensus 29 ~~~vi~e~~~~~l~ea~~la~~~g~~v~av~~G~~-----------------~~~~~~~~l----~~~--G~d~V~~~~~ 85 (202)
T cd01714 29 VPLIINPYDEYAVEEALRLKEKYGGEVTVVSMGPP-----------------QAEEALREA----LAM--GADRAILVSD 85 (202)
T ss_pred CCccCChHhHHHHHHHHHhhhhcCCEEEEEEECCH-----------------HHHHHHHHH----HHc--CCCEEEEEec
Confidence 33445677788888999988777778777666321 011111222 111 5533333222
Q ss_pred -------CCCchHHHHHHHHHcCCcEEEEccCCC
Q 026225 156 -------GKEKGPAIVEEARKQGVALLVLGQKKR 182 (241)
Q Consensus 156 -------G~~~~~~I~~~a~~~~~dllVmG~~~~ 182 (241)
.+...+.|.+.+++.++|+|++|+...
T Consensus 86 ~~~~~~~~e~~a~al~~~i~~~~p~lVL~~~t~~ 119 (202)
T cd01714 86 RAFAGADTLATAKALAAAIKKIGVDLILTGKQSI 119 (202)
T ss_pred ccccCCChHHHHHHHHHHHHHhCCCEEEEcCCcc
Confidence 122344688888888999999998775
No 79
>PRK00919 GMP synthase subunit B; Validated
Probab=61.27 E-value=42 Score=29.92 Aligned_cols=37 Identities=16% Similarity=0.140 Sum_probs=30.0
Q ss_pred CEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCC
Q 026225 72 RKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPS 111 (241)
Q Consensus 72 ~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~ 111 (241)
++|+|++.+.-+|.-++.++.+. .+.++..+|+....
T Consensus 22 ~kVlVa~SGGVDSsvla~la~~~---lG~~v~aV~vD~G~ 58 (307)
T PRK00919 22 GKAIIALSGGVDSSVAAVLAHRA---IGDRLTPVFVDTGL 58 (307)
T ss_pred CCEEEEecCCHHHHHHHHHHHHH---hCCeEEEEEEECCC
Confidence 78999999999998787776552 46789999997654
No 80
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=60.98 E-value=96 Score=27.97 Aligned_cols=99 Identities=16% Similarity=0.178 Sum_probs=54.9
Q ss_pred CEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEE
Q 026225 72 RKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEV 151 (241)
Q Consensus 72 ~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~ 151 (241)
++|+|++.+.-+|.-++..+.+ .+-++..+|+.............. ...+..+.++..|+.. +++..+
T Consensus 1 ~kVlValSGGvDSsvla~lL~~----~G~~V~~v~~~~~~~~~~~~~~~~------~s~~d~~~a~~~a~~L--gIp~~v 68 (346)
T PRK00143 1 KRVVVGMSGGVDSSVAAALLKE----QGYEVIGVFMKLWDDDDETGKGGC------CAEEDIADARRVADKL--GIPHYV 68 (346)
T ss_pred CeEEEEecCCHHHHHHHHHHHH----cCCcEEEEEEeCCCcccccccCCc------CcHHHHHHHHHHHHHc--CCcEEE
Confidence 3799999999888866655543 356788888865321000000000 0011223344445442 555443
Q ss_pred EEEc-----------------C----------C-CchHHHHHHHHHcCCcEEEEccCCC
Q 026225 152 AVVE-----------------G----------K-EKGPAIVEEARKQGVALLVLGQKKR 182 (241)
Q Consensus 152 ~~~~-----------------G----------~-~~~~~I~~~a~~~~~dllVmG~~~~ 182 (241)
.-.. | . -.-..+.+.|++.++|.|+.|.+.+
T Consensus 69 vd~~~~f~~~vi~~~~~~~~~g~tpnpc~~C~r~ik~~~l~~~A~~~g~~~IATGH~a~ 127 (346)
T PRK00143 69 VDFEKEFWDRVIDYFLDEYKAGRTPNPCVLCNKEIKFKAFLEYARELGADYIATGHYAR 127 (346)
T ss_pred EeCHHHHHHHHHHHHHHHHHcCCCCCcChhhhHHHHHHHHHHHHHHCCCCEEEeeeecc
Confidence 3211 1 1 1123677889999999999998664
No 81
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=60.53 E-value=43 Score=31.40 Aligned_cols=77 Identities=17% Similarity=0.279 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhhCCCccEEE--EEEcCCCchHHHHHHHHH----cCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHH
Q 026225 132 FVHSLKNMCQQKRPEVQFEV--AVVEGKEKGPAIVEEARK----QGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEY 205 (241)
Q Consensus 132 ~l~~~~~~~~~~~~~v~v~~--~~~~G~~~~~~I~~~a~~----~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~ 205 (241)
.+.++...+....|.+++.+ ..+.|+.....|++.++. .++|.||+|.-| |.+..+.. |=--...+
T Consensus 148 airDIl~~~~rR~P~~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGG-GSiEDLW~-------FNdE~vaR 219 (440)
T COG1570 148 ALRDILHTLSRRFPSVEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGG-GSIEDLWA-------FNDEIVAR 219 (440)
T ss_pred HHHHHHHHHHhhCCCCeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCc-chHHHHhc-------cChHHHHH
Confidence 34445555555556665543 355688888888887763 359999998554 44444321 00233445
Q ss_pred HHhcCCceEEE
Q 026225 206 CIQNADCMAVA 216 (241)
Q Consensus 206 vi~~a~~pVlv 216 (241)
-+.++.+||+-
T Consensus 220 Ai~~s~iPvIS 230 (440)
T COG1570 220 AIAASRIPVIS 230 (440)
T ss_pred HHHhCCCCeEe
Confidence 66778888874
No 82
>TIGR00930 2a30 K-Cl cotransporter.
Probab=59.41 E-value=1.4e+02 Score=31.00 Aligned_cols=124 Identities=15% Similarity=0.140 Sum_probs=75.7
Q ss_pred CEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEE
Q 026225 72 RKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEV 151 (241)
Q Consensus 72 ~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~ 151 (241)
-+|||.+........+++.|-.+. +...-+.+.||++.+.. +..+++++..+++....+.. .++.=.
T Consensus 576 PqiLvl~~~p~~~~~Ll~f~~~l~-~~~gl~i~~~v~~~~~~----------~~~~~~~~~~~~~~~~~~~~--~~~~f~ 642 (953)
T TIGR00930 576 PQCLVLTGPPVCRPALLDFASQFT-KGKGLMICGSVIQGPRL----------ECVKEAQAAEAKIQTWLEKN--KVKAFY 642 (953)
T ss_pred CeEEEEeCCCcCcHHHHHHHHHhc-cCCcEEEEEEEecCchh----------hhHHHHHHHHHHHHHHHHHh--CCCeEE
Confidence 478999987777778899988877 44457778888875321 01112222223333334433 466666
Q ss_pred EEEcCCCchHHHHHHHHH-----cCCcEEEEccCCC----C--chhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeCC
Q 026225 152 AVVEGKEKGPAIVEEARK-----QGVALLVLGQKKR----S--TTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRK 220 (241)
Q Consensus 152 ~~~~G~~~~~~I~~~a~~-----~~~dllVmG~~~~----~--~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~ 220 (241)
.++.+.+..+++...++. .++..|+||.... . ....++ + +...+ .....-|++.|..
T Consensus 643 ~~~~~~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~~w~~~~~~~~~~y~----------~-~i~~a-~~~~~~v~i~r~~ 710 (953)
T TIGR00930 643 AVVVADDLREGVRHLIQASGLGRMKPNTLVMGYKKDWRQAEPRAWETYI----------G-IIHDA-FDAHLAVVVVRNS 710 (953)
T ss_pred EEecCCCHHHHHHHHHHhcCCCCCCCCEEEecCccchhhccchhHHHHH----------H-HHHHH-HHcCCcEEEEccc
Confidence 677777777788888875 4789999997653 1 122222 1 33333 3567888888753
No 83
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=58.92 E-value=45 Score=31.09 Aligned_cols=75 Identities=15% Similarity=0.248 Sum_probs=42.9
Q ss_pred HHHHHHHHhhCCCccEE--EEEEcCCCchHHHHHHHHH----cCCcEEEEccCCCCchhhHh-hhhcCCCCCCCCHHHHH
Q 026225 134 HSLKNMCQQKRPEVQFE--VAVVEGKEKGPAIVEEARK----QGVALLVLGQKKRSTTWRLF-MMWAGNRVPGGSFVEYC 206 (241)
Q Consensus 134 ~~~~~~~~~~~~~v~v~--~~~~~G~~~~~~I~~~a~~----~~~dllVmG~~~~~~~~~~l-~~~~~~~~~~Gsv~~~v 206 (241)
.++...+....|.+++. ...+.|......|++.++. .++|.||++.-|. ....+. | =--.....
T Consensus 144 ~D~~~~~~~r~p~~~~~~~~~~vQG~~a~~~i~~al~~~~~~~~~dviii~RGGG-s~eDL~~F--------n~e~~~ra 214 (432)
T TIGR00237 144 ADILHILKRRDPSLKVVIYPTLVQGEGAVQSIVESIELANTKNECDVLIVGRGGG-SLEDLWSF--------NDEKVARA 214 (432)
T ss_pred HHHHHHHHhhCCCceEEEecccccCccHHHHHHHHHHHhhcCCCCCEEEEecCCC-CHHHhhhc--------CcHHHHHH
Confidence 33444444444444444 4456688877788877653 3479999985553 333321 1 02233445
Q ss_pred HhcCCceEEEE
Q 026225 207 IQNADCMAVAV 217 (241)
Q Consensus 207 i~~a~~pVlvV 217 (241)
+.++++||+.-
T Consensus 215 i~~~~~Pvis~ 225 (432)
T TIGR00237 215 IFLSKIPIISA 225 (432)
T ss_pred HHcCCCCEEEe
Confidence 66788998754
No 84
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=58.61 E-value=74 Score=25.93 Aligned_cols=32 Identities=13% Similarity=0.158 Sum_probs=24.6
Q ss_pred EEEEeecCCHHHHHHHHHHHHhhccCCCEEEEE
Q 026225 73 KIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLV 105 (241)
Q Consensus 73 ~ILVavD~s~~s~~al~~A~~~a~~~~~~l~Ll 105 (241)
||++++-++..+.++++.+..+. +.+.+|.++
T Consensus 1 ~illgvtGsiaa~ka~~lir~L~-~~g~~V~vv 32 (181)
T TIGR00421 1 RIVVAMTGASGVIYGIRLLEVLK-EAGVEVHLV 32 (181)
T ss_pred CEEEEEECHHHHHHHHHHHHHHH-HCCCEEEEE
Confidence 58999999999999999877764 446665444
No 85
>PRK00074 guaA GMP synthase; Reviewed
Probab=58.51 E-value=1.1e+02 Score=29.20 Aligned_cols=37 Identities=14% Similarity=0.162 Sum_probs=28.3
Q ss_pred CCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcC
Q 026225 71 GRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKP 110 (241)
Q Consensus 71 ~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~ 110 (241)
.++|+|++.+.-+|.-++..+.+. .+.++..+|+...
T Consensus 215 ~~~vlva~SGGvDS~vll~ll~~~---lg~~v~av~vd~g 251 (511)
T PRK00074 215 DKKVILGLSGGVDSSVAAVLLHKA---IGDQLTCVFVDHG 251 (511)
T ss_pred CCcEEEEeCCCccHHHHHHHHHHH---hCCceEEEEEeCC
Confidence 489999999998888666666543 2678999999654
No 86
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=58.11 E-value=1.9e+02 Score=28.17 Aligned_cols=60 Identities=15% Similarity=0.236 Sum_probs=40.4
Q ss_pred CccEEEEEEcCCCchHHHHHH---HHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeCCCc
Q 026225 146 EVQFEVAVVEGKEKGPAIVEE---ARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRKSK 222 (241)
Q Consensus 146 ~v~v~~~~~~G~~~~~~I~~~---a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~~~ 222 (241)
|++++..+.--+-..+.+.++ ++..+++.+|.++-....+-.. +..++++||+-||....
T Consensus 437 g~~~~~~v~sahr~~~~~~~~~~~~~~~~~~v~i~~ag~~~~l~~~-----------------~a~~t~~pvi~vp~~~~ 499 (577)
T PLN02948 437 GVPYEVTIVSAHRTPERMFSYARSAHSRGLQVIIAGAGGAAHLPGM-----------------VASMTPLPVIGVPVKTS 499 (577)
T ss_pred CCCeEEEEECCccCHHHHHHHHHHHHHCCCCEEEEEcCccccchHH-----------------HhhccCCCEEEcCCCCC
Confidence 888888877765444455554 4567889877776554544433 34478999999998654
No 87
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=58.02 E-value=1.2e+02 Score=26.87 Aligned_cols=35 Identities=14% Similarity=0.190 Sum_probs=26.5
Q ss_pred EEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcC
Q 026225 73 KIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKP 110 (241)
Q Consensus 73 ~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~ 110 (241)
+|+|++.+.-+|.-++..+.+. .+.++..+|+...
T Consensus 1 kVlVa~SGGVDSsvla~ll~~~---lG~~v~aV~vd~g 35 (295)
T cd01997 1 KVILALSGGVDSTVAAVLLHKA---IGDRLTCVFVDNG 35 (295)
T ss_pred CEEEEEcCChHHHHHHHHHHHH---hCCcEEEEEecCC
Confidence 5899999998888676666542 4568999999654
No 88
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=57.56 E-value=40 Score=26.06 Aligned_cols=63 Identities=13% Similarity=0.067 Sum_probs=41.7
Q ss_pred EEEEEEc-CCCchHHHHHHHHHcCCcEEEEccC----CC-CchhhHhhhhcCCCCCCCCHHHHHHhcC-CceEEEEeCCC
Q 026225 149 FEVAVVE-GKEKGPAIVEEARKQGVALLVLGQK----KR-STTWRLFMMWAGNRVPGGSFVEYCIQNA-DCMAVAVRRKS 221 (241)
Q Consensus 149 v~~~~~~-G~~~~~~I~~~a~~~~~dllVmG~~----~~-~~~~~~l~~~~~~~~~~Gsv~~~vi~~a-~~pVlvV~~~~ 221 (241)
+.+.... .....+.|.+++++++++.||+|-- +. +...... -.+++.+-... ++||..+-.+.
T Consensus 28 l~~i~~~~~~~~~~~l~~li~~~~i~~iVvGlP~~~~G~~~~~~~~v----------~~f~~~L~~~~~~ipV~~~DEr~ 97 (135)
T PF03652_consen 28 LETIPRRNREKDIEELKKLIEEYQIDGIVVGLPLNMDGSESEQARRV----------RKFAEELKKRFPGIPVILVDERL 97 (135)
T ss_dssp EEEEEECCCCCCHHHHHHHHHHCCECEEEEEEEBBCTSSC-CCHHHH----------HHHHHHHHHHH-TSEEEEEECSC
T ss_pred eEEEECCCCchHHHHHHHHHHHhCCCEEEEeCCcccCCCccHHHHHH----------HHHHHHHHHhcCCCcEEEECCCh
Confidence 3444433 2344559999999999999999952 22 2222222 34778888887 99999997653
No 89
>PRK00509 argininosuccinate synthase; Provisional
Probab=57.50 E-value=1.6e+02 Score=27.27 Aligned_cols=37 Identities=8% Similarity=0.132 Sum_probs=30.1
Q ss_pred CCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcC
Q 026225 71 GRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKP 110 (241)
Q Consensus 71 ~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~ 110 (241)
..+|+|++.+.-+|.-++.|+.+. .+.+|+.+++...
T Consensus 2 ~~kVvva~SGGlDSsvla~~l~e~---lG~eViavt~d~G 38 (399)
T PRK00509 2 KKKVVLAYSGGLDTSVIIKWLKET---YGCEVIAFTADVG 38 (399)
T ss_pred CCeEEEEEcCCHHHHHHHHHHHHh---hCCeEEEEEEecC
Confidence 468999999999999888887663 3678999999654
No 90
>PRK10674 deoxyribodipyrimidine photolyase; Provisional
Probab=57.20 E-value=94 Score=29.27 Aligned_cols=91 Identities=12% Similarity=0.106 Sum_probs=55.4
Q ss_pred cCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEEEEEc---
Q 026225 79 DSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEVAVVE--- 155 (241)
Q Consensus 79 D~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~~~~--- 155 (241)
|.--....||..|++.+ +..|..|+|.++....... .......-..+-|.++.+.+... |+++ .+..
T Consensus 11 DLRl~DN~aL~~A~~~~---~~~vlpvyv~dp~~~~~~~---~~~~r~~Fl~esL~~L~~~L~~~--g~~L--~v~~g~~ 80 (472)
T PRK10674 11 DLRLHDNLALAAACRDP---SARVLALFIATPAQWAAHD---MAPRQAAFINAQLNALQIALAEK--GIPL--LFHEVDD 80 (472)
T ss_pred CCCcchHHHHHHHHhCC---CCCEEEEEEECchhhccCC---CCHHHHHHHHHHHHHHHHHHHHc--CCce--EEEecCC
Confidence 44444456777776543 2469999999875321111 12222344555666666666653 5555 5554
Q ss_pred -CCCchHHHHHHHHHcCCcEEEEccC
Q 026225 156 -GKEKGPAIVEEARKQGVALLVLGQK 180 (241)
Q Consensus 156 -G~~~~~~I~~~a~~~~~dllVmG~~ 180 (241)
|++.. .|.+++++.+++-|+.-..
T Consensus 81 ~g~~~~-vl~~l~~~~~i~~v~~~~~ 105 (472)
T PRK10674 81 FAASVE-WLKQFCQQHQVTHLFYNYQ 105 (472)
T ss_pred cCCHHH-HHHHHHHHcCCCEEEEecc
Confidence 45554 8999999999999998643
No 91
>PRK14057 epimerase; Provisional
Probab=55.78 E-value=1.4e+02 Score=25.93 Aligned_cols=49 Identities=18% Similarity=0.138 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHhhCCCccEEEEEEcCCCchHHHHHHHHHcCCcEEEEccC
Q 026225 128 RGYEFVHSLKNMCQQKRPEVQFEVAVVEGKEKGPAIVEEARKQGVALLVLGQK 180 (241)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~~v~v~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~ 180 (241)
...+.+.+++++..+. +..+.+. ++|.-..+.|. .+.+.++|.+|+|+-
T Consensus 175 ~~l~KI~~lr~~~~~~--~~~~~Ie-VDGGI~~~ti~-~l~~aGad~~V~GSa 223 (254)
T PRK14057 175 DLHERVAQLLCLLGDK--REGKIIV-IDGSLTQDQLP-SLIAQGIDRVVSGSA 223 (254)
T ss_pred HHHHHHHHHHHHHHhc--CCCceEE-EECCCCHHHHH-HHHHCCCCEEEEChH
Confidence 3344445555555543 4444444 45554443554 556679999999953
No 92
>PRK04527 argininosuccinate synthase; Provisional
Probab=54.64 E-value=1.8e+02 Score=26.97 Aligned_cols=36 Identities=8% Similarity=0.105 Sum_probs=29.2
Q ss_pred CCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcC
Q 026225 71 GRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKP 110 (241)
Q Consensus 71 ~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~ 110 (241)
.++|+|++.+.-+|.-++.|+.+ .+.+++.+++...
T Consensus 2 ~~kVvVA~SGGvDSSvla~~l~e----~G~~Viavt~d~g 37 (400)
T PRK04527 2 SKDIVLAFSGGLDTSFCIPYLQE----RGYAVHTVFADTG 37 (400)
T ss_pred CCcEEEEEcCChHHHHHHHHHHH----cCCcEEEEEEEeC
Confidence 46899999999999888888766 3678888888654
No 93
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=54.05 E-value=54 Score=27.71 Aligned_cols=58 Identities=14% Similarity=0.190 Sum_probs=42.0
Q ss_pred hHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeCCCc---------CCCCeEEe
Q 026225 160 GPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRKSK---------KLGGYLIT 230 (241)
Q Consensus 160 ~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~~~---------~~~~~li~ 230 (241)
+...-+..++.++|++|+++-....- +..-+..++..+..|++|+.+... ...||.|.
T Consensus 49 eaav~~~~e~~~pDfvi~isPNpaaP-------------GP~kARE~l~~s~~PaiiigDaPg~~vkdeleeqGlGYIiv 115 (277)
T COG1927 49 EAAVTEMLEEFNPDFVIYISPNPAAP-------------GPKKAREILSDSDVPAIIIGDAPGLKVKDELEEQGLGYIIV 115 (277)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCC-------------CchHHHHHHhhcCCCEEEecCCccchhHHHHHhcCCeEEEe
Confidence 44566777889999999997654332 145678899999999999965431 45677664
No 94
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=53.63 E-value=60 Score=23.69 Aligned_cols=51 Identities=18% Similarity=0.141 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHhhCCCccEEEEE-----------EcCCCchHHHHHHHHHcCCcEEEEccC
Q 026225 128 RGYEFVHSLKNMCQQKRPEVQFEVAV-----------VEGKEKGPAIVEEARKQGVALLVLGQK 180 (241)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~~v~v~~~~-----------~~G~~~~~~I~~~a~~~~~dllVmG~~ 180 (241)
..++.++++..++... |+.+.-.+ ..|.-..+.|.+.++..++|+||.-..
T Consensus 5 ~~~~~l~El~~L~~t~--g~~vv~~~~q~~~~~~p~~~iG~GK~eei~~~~~~~~~d~vvfd~~ 66 (95)
T PF13167_consen 5 DFEESLEELEELAETA--GYEVVGTVVQKRRKPDPKTYIGSGKVEEIKELIEELDADLVVFDNE 66 (95)
T ss_pred cHHHHHHHHHHHHHHC--CCeEEEEEEecCCCCCcceeechhHHHHHHHHHhhcCCCEEEECCC
Confidence 3455667777777763 55543222 224545568999999999999999753
No 95
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=53.55 E-value=1.6e+02 Score=26.11 Aligned_cols=77 Identities=13% Similarity=0.129 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHHHHHhhCCCccEEEEEEcCCCc---hHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCC-
Q 026225 126 APRGYEFVHSLKNMCQQKRPEVQFEVAVVEGKEK---GPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGS- 201 (241)
Q Consensus 126 ~~~~~~~l~~~~~~~~~~~~~v~v~~~~~~G~~~---~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gs- 201 (241)
.+...++++.+++.+.. ++++.+.+.-|.+. ...+.+.+++.++|+|.+..+.+.. .. . |.
T Consensus 116 ~~~~~eiv~avr~~~~~---~~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~--~y-~---------g~~ 180 (312)
T PRK10550 116 PELIYQGAKAMREAVPA---HLPVTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRTKED--GY-R---------AEH 180 (312)
T ss_pred HHHHHHHHHHHHHhcCC---CcceEEEEECCCCCchHHHHHHHHHHhcCCCEEEECCCCCcc--CC-C---------CCc
Confidence 34556666666554421 47787777766422 2366777788899999996654321 11 0 22
Q ss_pred ----HHHHHHhcCCceEEEE
Q 026225 202 ----FVEYCIQNADCMAVAV 217 (241)
Q Consensus 202 ----v~~~vi~~a~~pVlvV 217 (241)
.+..+-++.++||+..
T Consensus 181 ~~~~~i~~ik~~~~iPVi~n 200 (312)
T PRK10550 181 INWQAIGEIRQRLTIPVIAN 200 (312)
T ss_pred ccHHHHHHHHhhcCCcEEEe
Confidence 3455666667787765
No 96
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=53.51 E-value=1.4e+02 Score=25.26 Aligned_cols=93 Identities=17% Similarity=0.283 Sum_probs=46.2
Q ss_pred CCCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccE
Q 026225 70 SGRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQF 149 (241)
Q Consensus 70 ~~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v 149 (241)
.+.+.=+++.....- ..+.+.+... +.|.++.|.+... +.. ......+.+.++++...+. +.++
T Consensus 109 ~g~k~GlalnP~T~~-~~i~~~l~~v----D~VlvMtV~PGf~-----GQ~----fi~~~l~KI~~l~~~~~~~--~~~~ 172 (223)
T PRK08745 109 HGCQAGLVLNPATPV-DILDWVLPEL----DLVLVMSVNPGFG-----GQA----FIPSALDKLRAIRKKIDAL--GKPI 172 (223)
T ss_pred CCCceeEEeCCCCCH-HHHHHHHhhc----CEEEEEEECCCCC-----Ccc----ccHHHHHHHHHHHHHHHhc--CCCe
Confidence 344556666654222 2333333322 4555555544322 111 2233334445555555543 4444
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCcEEEEccC
Q 026225 150 EVAVVEGKEKGPAIVEEARKQGVALLVLGQK 180 (241)
Q Consensus 150 ~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~ 180 (241)
.+.+--|- ..+.|. .+.+.++|.+|+|+.
T Consensus 173 ~IeVDGGI-~~eti~-~l~~aGaDi~V~GSa 201 (223)
T PRK08745 173 RLEIDGGV-KADNIG-AIAAAGADTFVAGSA 201 (223)
T ss_pred eEEEECCC-CHHHHH-HHHHcCCCEEEEChh
Confidence 44444444 343554 556678999999953
No 97
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=52.56 E-value=1.5e+02 Score=25.27 Aligned_cols=93 Identities=15% Similarity=0.326 Sum_probs=48.2
Q ss_pred CCCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccE
Q 026225 70 SGRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQF 149 (241)
Q Consensus 70 ~~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v 149 (241)
.+.+.=+++.....- ..+...+..+ +.|.++.|.+... +.. ......+.+.+++++..+. +.++
T Consensus 107 ~G~kaGlalnP~T~~-~~l~~~l~~v----D~VLvMsV~PGf~-----GQ~----fi~~~l~KI~~lr~~~~~~--~~~~ 170 (229)
T PRK09722 107 AGMKVGLVLNPETPV-ESIKYYIHLL----DKITVMTVDPGFA-----GQP----FIPEMLDKIAELKALRERN--GLEY 170 (229)
T ss_pred cCCCEEEEeCCCCCH-HHHHHHHHhc----CEEEEEEEcCCCc-----chh----ccHHHHHHHHHHHHHHHhc--CCCe
Confidence 445666677664322 2333333332 4566666644322 122 2333444455555655543 4555
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCcEEEEccC
Q 026225 150 EVAVVEGKEKGPAIVEEARKQGVALLVLGQK 180 (241)
Q Consensus 150 ~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~ 180 (241)
.+.+ +|.-..+.|. .+.+.++|.+|+|+.
T Consensus 171 ~IeV-DGGI~~~~i~-~~~~aGad~~V~Gss 199 (229)
T PRK09722 171 LIEV-DGSCNQKTYE-KLMEAGADVFIVGTS 199 (229)
T ss_pred EEEE-ECCCCHHHHH-HHHHcCCCEEEEChH
Confidence 5444 4543443555 455679999999953
No 98
>PRK10867 signal recognition particle protein; Provisional
Probab=52.00 E-value=2.1e+02 Score=26.85 Aligned_cols=91 Identities=18% Similarity=0.131 Sum_probs=50.3
Q ss_pred ecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEEEEEcCC
Q 026225 78 VDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEVAVVEGK 157 (241)
Q Consensus 78 vD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~~~~G~ 157 (241)
.-++-.+..+...|..+..+.+.++.++..-.. ...+. ++++..++. .++++...-...+
T Consensus 108 ~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~---------------R~aa~---eQL~~~a~~--~gv~v~~~~~~~d 167 (433)
T PRK10867 108 LQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVY---------------RPAAI---EQLKTLGEQ--IGVPVFPSGDGQD 167 (433)
T ss_pred CCCCcHHHHHHHHHHHHHHhcCCcEEEEEcccc---------------chHHH---HHHHHHHhh--cCCeEEecCCCCC
Confidence 445667777888888777655677877765321 11111 223333333 2555543322223
Q ss_pred Cch--HHHHHHHHHcCCcEEEEccCCCCchhhH
Q 026225 158 EKG--PAIVEEARKQGVALLVLGQKKRSTTWRL 188 (241)
Q Consensus 158 ~~~--~~I~~~a~~~~~dllVmG~~~~~~~~~~ 188 (241)
+.. ...+++++..++|+||+-+-++.....-
T Consensus 168 p~~i~~~a~~~a~~~~~DvVIIDTaGrl~~d~~ 200 (433)
T PRK10867 168 PVDIAKAALEEAKENGYDVVIVDTAGRLHIDEE 200 (433)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcccCHH
Confidence 221 1233455667899999999998665443
No 99
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=50.58 E-value=1.4e+02 Score=27.91 Aligned_cols=86 Identities=16% Similarity=0.132 Sum_probs=54.2
Q ss_pred CCCEEEEeecCC-HHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCcc
Q 026225 70 SGRKIMIVVDSS-NEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQ 148 (241)
Q Consensus 70 ~~~~ILVavD~s-~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~ 148 (241)
.+.-||+.-|.. -.|.-+|+.+..+|.+. .+|||....+ ..+.+-+++. .++.
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~----~vLYVsGEES---------~~QiklRA~R-------------L~~~ 145 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAARLAKRG----KVLYVSGEES---------LQQIKLRADR-------------LGLP 145 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHHHHHhcC----cEEEEeCCcC---------HHHHHHHHHH-------------hCCC
Confidence 456788888875 45666888888888554 7788865432 2222222221 1443
Q ss_pred EEEEEEcCCCchHHHHHHHHHcCCcEEEEccCC
Q 026225 149 FEVAVVEGKEKGPAIVEEARKQGVALLVLGQKK 181 (241)
Q Consensus 149 v~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~ 181 (241)
.+-..+-....-+.|++.+++.++|++|+-+-.
T Consensus 146 ~~~l~l~aEt~~e~I~~~l~~~~p~lvVIDSIQ 178 (456)
T COG1066 146 TNNLYLLAETNLEDIIAELEQEKPDLVVIDSIQ 178 (456)
T ss_pred ccceEEehhcCHHHHHHHHHhcCCCEEEEeccc
Confidence 333333333334499999999999999998643
No 100
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=50.45 E-value=1.6e+02 Score=24.99 Aligned_cols=92 Identities=12% Similarity=0.145 Sum_probs=50.7
Q ss_pred EEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEEE
Q 026225 73 KIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEVA 152 (241)
Q Consensus 73 ~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~ 152 (241)
++++.+.+..+|..|+.+|... ..-+.|+++.+.......... . ..++++. +.+. .|+++...
T Consensus 2 k~~~l~SGGKDS~~al~~a~~~----~~v~~L~t~~~~~~~s~~~H~-----~---~~~~~~~---qA~a--lgipl~~~ 64 (223)
T TIGR00290 2 KVAALISGGKDSCLALYHALKE----HEVISLVNIMPENEESYMFHG-----V---NAHLTDL---QAES--IGIPLIKL 64 (223)
T ss_pred cEEEEecCcHHHHHHHHHHHHh----CeeEEEEEEecCCCCcccccc-----c---CHHHHHH---HHHH--cCCCeEEe
Confidence 4678889999999999998776 345677777764321110000 0 1112111 1111 25665332
Q ss_pred EEcCC--CchHHHHHHHHHcCCcEEEEccCC
Q 026225 153 VVEGK--EKGPAIVEEARKQGVALLVLGQKK 181 (241)
Q Consensus 153 ~~~G~--~~~~~I~~~a~~~~~dllVmG~~~ 181 (241)
...+. .-.+.+.+..++.+++.||-|.--
T Consensus 65 ~~~~~~e~~~e~l~~~l~~~gv~~vv~GdI~ 95 (223)
T TIGR00290 65 YTEGTEEDEVEELKGILHTLDVEAVVFGAIY 95 (223)
T ss_pred ecCCCccHHHHHHHHHHHHcCCCEEEECCcc
Confidence 22221 122366666777799999999643
No 101
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=49.95 E-value=1.6e+02 Score=25.00 Aligned_cols=91 Identities=19% Similarity=0.223 Sum_probs=50.4
Q ss_pred EEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEEE
Q 026225 73 KIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEVA 152 (241)
Q Consensus 73 ~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~ 152 (241)
++++-+.+..+|..|+-+|++ .|-+|..+-.+.|....+.. .....-+ +..+...+ .|+++...
T Consensus 2 k~~aL~SGGKDS~~Al~~a~~----~G~eV~~Ll~~~p~~~dS~m----~H~~n~~----~~~~~Ae~----~gi~l~~~ 65 (223)
T COG2102 2 KVIALYSGGKDSFYALYLALE----EGHEVVYLLTVKPENGDSYM----FHTPNLE----LAELQAEA----MGIPLVTF 65 (223)
T ss_pred cEEEEEecCcHHHHHHHHHHH----cCCeeEEEEEEecCCCCeee----eeccchH----HHHHHHHh----cCCceEEE
Confidence 466777888888877777755 55565444444433311110 0001111 11111222 26777666
Q ss_pred EEcC---CCchHHHHHHHHHcCCcEEEEccC
Q 026225 153 VVEG---KEKGPAIVEEARKQGVALLVLGQK 180 (241)
Q Consensus 153 ~~~G---~~~~~~I~~~a~~~~~dllVmG~~ 180 (241)
...| ...+ .+.+..+..++|-||.|.-
T Consensus 66 ~~~g~~e~eve-~L~~~l~~l~~d~iv~GaI 95 (223)
T COG2102 66 DTSGEEEREVE-ELKEALRRLKVDGIVAGAI 95 (223)
T ss_pred ecCccchhhHH-HHHHHHHhCcccEEEEchh
Confidence 6666 2333 6777778889999999963
No 102
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=47.97 E-value=77 Score=28.79 Aligned_cols=78 Identities=15% Similarity=0.217 Sum_probs=53.5
Q ss_pred CccEEEEEEcCC--------CchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEE
Q 026225 146 EVQFEVAVVEGK--------EKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAV 217 (241)
Q Consensus 146 ~v~v~~~~~~G~--------~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV 217 (241)
+.+|.--++.|+ .+.+.|++.+++.++|++|-|.-=.-+.=.... |.++..|-.+..+|++.-
T Consensus 47 ~~eIv~TiiCGDnyf~en~eea~~~i~~mv~~~~pD~viaGPaFnagrYG~ac---------g~v~~aV~e~~~IP~vta 117 (349)
T PF07355_consen 47 DAEIVATIICGDNYFNENKEEALKKILEMVKKLKPDVVIAGPAFNAGRYGVAC---------GEVAKAVQEKLGIPVVTA 117 (349)
T ss_pred CCEEEEEEEECcchhhhCHHHHHHHHHHHHHhcCCCEEEEcCCcCCchHHHHH---------HHHHHHHHHhhCCCEEEE
Confidence 456666666653 345578899999999999999653322223333 888888999999999976
Q ss_pred eCCC------cCCCCeEEecc
Q 026225 218 RRKS------KKLGGYLITTK 232 (241)
Q Consensus 218 ~~~~------~~~~~~li~t~ 232 (241)
=... .+..-|+|.|+
T Consensus 118 M~~ENpgv~~yk~~~~Ivkt~ 138 (349)
T PF07355_consen 118 MYEENPGVEMYKKDVYIVKTK 138 (349)
T ss_pred ecccChhHHHHhhccEEEECC
Confidence 3222 34556777774
No 103
>PRK08576 hypothetical protein; Provisional
Probab=47.26 E-value=2e+02 Score=26.97 Aligned_cols=87 Identities=22% Similarity=0.225 Sum_probs=50.7
Q ss_pred EEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEEE
Q 026225 73 KIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEVA 152 (241)
Q Consensus 73 ~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~ 152 (241)
+|+|++.+..+|..++..+.+... .+.++++.....+ .+ ..+.+.+.++.. |+++...
T Consensus 236 rVvVafSGGKDStvLL~La~k~~~----~V~aV~iDTG~e~-------------pe---t~e~~~~lae~L--GI~lii~ 293 (438)
T PRK08576 236 TVIVPWSGGKDSTAALLLAKKAFG----DVTAVYVDTGYEM-------------PL---TDEYVEKVAEKL--GVDLIRA 293 (438)
T ss_pred CEEEEEcChHHHHHHHHHHHHhCC----CCEEEEeCCCCCC-------------hH---HHHHHHHHHHHc--CCCEEEc
Confidence 899999999999988877766542 3777776433210 01 122233333332 5554431
Q ss_pred EE--------cCCC----------chHHHHHHHHHcCCcEEEEccCC
Q 026225 153 VV--------EGKE----------KGPAIVEEARKQGVALLVLGQKK 181 (241)
Q Consensus 153 ~~--------~G~~----------~~~~I~~~a~~~~~dllVmG~~~ 181 (241)
-. .|.+ .-..+.+.+++.+++.++.|.+.
T Consensus 294 ~v~~~~~~~~~g~p~~~~rcCt~lK~~pL~raake~g~~~iatG~R~ 340 (438)
T PRK08576 294 GVDVPMPIEKYGMPTHSNRWCTKLKVEALEEAIRELEDGLLVVGDRD 340 (438)
T ss_pred ccCHHHHhhhcCCCCcccchhhHHHHHHHHHHHHhCCCCEEEEEeeH
Confidence 00 0111 12367778888999999999753
No 104
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=46.98 E-value=2e+02 Score=25.36 Aligned_cols=97 Identities=15% Similarity=0.172 Sum_probs=58.3
Q ss_pred CCCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccE
Q 026225 70 SGRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQF 149 (241)
Q Consensus 70 ~~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v 149 (241)
...||.|-+.++.....+|-++... ...+++|.+|-...+ .+. +.+++. |+++
T Consensus 92 ~~~kiavl~Sg~g~nl~al~~~~~~-~~l~~~i~~visn~~-----------------~~~-------~~A~~~--gIp~ 144 (289)
T PRK13010 92 QRPKVVIMVSKFDHCLNDLLYRWRM-GELDMDIVGIISNHP-----------------DLQ-------PLAVQH--DIPF 144 (289)
T ss_pred CCeEEEEEEeCCCccHHHHHHHHHC-CCCCcEEEEEEECCh-----------------hHH-------HHHHHc--CCCE
Confidence 3468999999988878788877543 234556665544322 111 222322 6776
Q ss_pred EEEEEc---CCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhc
Q 026225 150 EVAVVE---GKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWA 193 (241)
Q Consensus 150 ~~~~~~---G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~ 193 (241)
...-.. -...+..+.+..+++++|++|+..-.+---..++-.|.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~l~~~~~Dlivlagym~il~~~~l~~~~ 191 (289)
T PRK13010 145 HHLPVTPDTKAQQEAQILDLIETSGAELVVLARYMQVLSDDLSRKLS 191 (289)
T ss_pred EEeCCCcccccchHHHHHHHHHHhCCCEEEEehhhhhCCHHHHhhcc
Confidence 643221 11234478999999999999998766544444554443
No 105
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=46.71 E-value=1.8e+02 Score=24.53 Aligned_cols=91 Identities=13% Similarity=0.127 Sum_probs=41.5
Q ss_pred EEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEEE
Q 026225 73 KIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEVA 152 (241)
Q Consensus 73 ~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~ 152 (241)
++++-..+..+|-.||..|.+. ..-..|+++.+...........-.+-...+++. .|++....
T Consensus 2 k~v~l~SGGKDS~lAl~~a~~~----~~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~a-------------lgipl~~~ 64 (218)
T PF01902_consen 2 KVVALWSGGKDSCLALYRALRQ----HEVVCLLTMVPEEEDSYMFHGVNIELIEAQAEA-------------LGIPLIEI 64 (218)
T ss_dssp EEEEE--SSHHHHHHHHHHHHT-----EEEEEEEEEESTTT-SSS-STTGTCHHHHHHH-------------HT--EEEE
T ss_pred cEEEEEcCcHHHHHHHHHHHHh----CCccEEEEeccCCCCcccccccCHHHHHHHHHH-------------CCCCEEEE
Confidence 5677788899999999888765 224466666654331111111001111111111 15666555
Q ss_pred EEcCCC--chHHHHHHHHHcCCcEEEEccC
Q 026225 153 VVEGKE--KGPAIVEEARKQGVALLVLGQK 180 (241)
Q Consensus 153 ~~~G~~--~~~~I~~~a~~~~~dllVmG~~ 180 (241)
...|.. -.+.+.+..++.+++.+|-|.=
T Consensus 65 ~~~g~~~~~~~~l~~~l~~~~v~~vv~GdI 94 (218)
T PF01902_consen 65 PTSGDEEDYVEDLKEALKELKVEAVVFGDI 94 (218)
T ss_dssp EE---CCCHHHHHHHHHCTC--SEEE--TT
T ss_pred EccCccchhhHHHHHHHHHcCCCEEEECcC
Confidence 555332 1236666677788999998863
No 106
>PRK12569 hypothetical protein; Provisional
Probab=46.50 E-value=1.9e+02 Score=24.91 Aligned_cols=126 Identities=10% Similarity=0.018 Sum_probs=75.4
Q ss_pred HHHHHHHHHhhccCCCEEEEEEEEcCCC--CCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEEEEEc-------
Q 026225 85 KGALQWSLTHTVQSQDKVVLVYVIKPSN--NKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEVAVVE------- 155 (241)
Q Consensus 85 ~~al~~A~~~a~~~~~~l~LlhV~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~~~~------- 155 (241)
...++.++++|.+.+..|-. |.-.|+. +......-..++........+..++.+|... |.++..+=-+
T Consensus 46 p~~M~~tv~lA~~~~V~IGA-HPsyPD~~gFGRr~m~~s~~el~~~v~yQigaL~~~~~~~--g~~l~hVKPHGALYN~~ 122 (245)
T PRK12569 46 PNIMRRTVELAKAHGVGIGA-HPGFRDLVGFGRRHINASPQELVNDVLYQLGALREFARAH--GVRLQHVKPHGALYMHA 122 (245)
T ss_pred HHHHHHHHHHHHHcCCEecc-CCCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHc--CCeeEEecCCHHHHHHH
Confidence 45667777777777654432 3333332 1111222233344444555567777888764 6776644222
Q ss_pred --CCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEE--EEeCCCcCCCCeEEec
Q 026225 156 --GKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAV--AVRRKSKKLGGYLITT 231 (241)
Q Consensus 156 --G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVl--vV~~~~~~~~~~li~t 231 (241)
.......|++.++..+.+|++++.. ||..+...+....+++ ++-++....+|.|+.-
T Consensus 123 ~~d~~la~av~~ai~~~~~~l~l~~~~-------------------~s~~~~~A~~~Gl~~~~E~FADR~Y~~dG~Lv~R 183 (245)
T PRK12569 123 ARDEALARLLVEALARLDPLLILYCMD-------------------GSATERAARELGQPVVREFYADRDYDDSGSIVFT 183 (245)
T ss_pred hcCHHHHHHHHHHHHHhCCCcEEEecC-------------------CcHHHHHHHHcCCCeEEEEEecCccCCCCCEecC
Confidence 2446668999999999999998854 4455666666666665 4566666677777754
Q ss_pred c
Q 026225 232 K 232 (241)
Q Consensus 232 ~ 232 (241)
+
T Consensus 184 ~ 184 (245)
T PRK12569 184 R 184 (245)
T ss_pred C
Confidence 3
No 107
>COG1036 Archaeal flavoproteins [Energy production and conversion]
Probab=46.36 E-value=45 Score=27.03 Aligned_cols=128 Identities=17% Similarity=0.200 Sum_probs=71.2
Q ss_pred CCCEEEEeecCC-HHHHHHHHHHHHhhccCCC-EEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCc
Q 026225 70 SGRKIMIVVDSS-NEAKGALQWSLTHTVQSQD-KVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEV 147 (241)
Q Consensus 70 ~~~~ILVavD~s-~~s~~al~~A~~~a~~~~~-~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v 147 (241)
+.++|.=++-++ +.-....+...++-...++ ++.++ +.. .++ +--+.+.+.+.+++.+. ++
T Consensus 7 ~~~rIaWgITGaG~~L~Et~~imk~lk~~~~~~~v~v~-lSk-------age-----eVvk~YgL~~~l~~~~~----~~ 69 (187)
T COG1036 7 KKKRIAWGITGAGHLLPETYQIMKELKKEYGDVEVDVF-LSK-------AGE-----EVVKMYGLWDKLEKIFG----GL 69 (187)
T ss_pred ccceEEEEEeccccccHHHHHHHHHHHhhcCCceEEEe-ehh-------hHH-----HHHHHHHHHHHHHHHcC----Ce
Confidence 456788888775 2233344444555555554 33322 111 111 22345556666666553 54
Q ss_pred cEEEEEEcCCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhc-------CCceEEEEeCC
Q 026225 148 QFEVAVVEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQN-------ADCMAVAVRRK 220 (241)
Q Consensus 148 ~v~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~-------a~~pVlvV~~~ 220 (241)
+ +-.|-. .+-|.=-.+-.++|+|++..-.......+.. | +++.++.| ...||.++|..
T Consensus 70 ~----~e~~an-sPfi~GrlqlGkYD~llvaPaTsNTvAKIa~---------G-IADtLVTNAVaqa~Kg~VPvyivP~D 134 (187)
T COG1036 70 E----VEIGAN-SPFIAGRLQLGKYDFLLVAPATSNTVAKIAY---------G-IADTLVTNAVAQAGKGKVPVYIVPVD 134 (187)
T ss_pred E----eecCCC-CCceecceecccccEEEEcccccchHHHHHh---------h-hHHHHHHHHHHHhcCCCCcEEEeccc
Confidence 2 222322 2234444456689999998776666666654 4 55555543 37999999887
Q ss_pred CcCCCCeEEec
Q 026225 221 SKKLGGYLITT 231 (241)
Q Consensus 221 ~~~~~~~li~t 231 (241)
.+ .|.+.|+
T Consensus 135 ~k--~G~V~t~ 143 (187)
T COG1036 135 YK--EGTVETT 143 (187)
T ss_pred cc--CCeEEEc
Confidence 66 5666664
No 108
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=46.22 E-value=2.3e+02 Score=25.80 Aligned_cols=87 Identities=16% Similarity=0.188 Sum_probs=52.9
Q ss_pred CCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEE
Q 026225 71 GRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFE 150 (241)
Q Consensus 71 ~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~ 150 (241)
.++|+|++.+.-+|.-++.++. ..+.++..+|+.... ++ .+.++..|+.. |++..
T Consensus 5 ~~kVlVa~SGGvDSsv~a~lL~----~~G~eV~av~~~~~~-------~e------------~~~a~~va~~L--GI~~~ 59 (362)
T PRK14664 5 KKRVLVGMSGGIDSTATCLMLQ----EQGYEIVGVTMRVWG-------DE------------PQDARELAARM--GIEHY 59 (362)
T ss_pred CCEEEEEEeCCHHHHHHHHHHH----HcCCcEEEEEecCcc-------hh------------HHHHHHHHHHh--CCCEE
Confidence 4699999999888876665433 246678888883210 00 01234444442 45443
Q ss_pred EEEEc-----------------CC-----------CchHHHHHHHHHcCCcEEEEccCCC
Q 026225 151 VAVVE-----------------GK-----------EKGPAIVEEARKQGVALLVLGQKKR 182 (241)
Q Consensus 151 ~~~~~-----------------G~-----------~~~~~I~~~a~~~~~dllVmG~~~~ 182 (241)
+.-.. |. -.-..+.++|++.++|.|+-|...+
T Consensus 60 vvd~~~~f~~~v~~~~~~~~~~G~tpnpC~~Cn~~iKf~~L~~~A~~~G~~~IATGHyar 119 (362)
T PRK14664 60 VADERVPFKDTIVKNFIDEYRQGRTPNPCVMCNPLFKFRMLIEWADKLGCAWIATGHYSR 119 (362)
T ss_pred EEeChHHHHHHHHHHhHHHHHcCCCCCCchhhhHHHHHHHHHHHHHHcCCCEEEECCccc
Confidence 32211 22 1223688899999999999998764
No 109
>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor. This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.
Probab=45.96 E-value=2.4e+02 Score=25.77 Aligned_cols=99 Identities=7% Similarity=0.091 Sum_probs=54.7
Q ss_pred CCCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccE
Q 026225 70 SGRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQF 149 (241)
Q Consensus 70 ~~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v 149 (241)
..++|.+..+.++..+..++...+.+.+.|-.|.....++.... . .....+....+.+++.. .+.++
T Consensus 171 ~w~~Vaii~~~d~yG~~~~~~f~~~~~~~GicIa~~e~~~~~~~-~----------~~~~~~~~~~~~~~ik~--~~a~v 237 (403)
T cd06361 171 GWNWVGIIITDDDYGRSALETFIIQAEANGVCIAFKEILPASLS-D----------NTKLNRIIRTTEKIIEE--NKVNV 237 (403)
T ss_pred CCcEEEEEEecCchHHHHHHHHHHHHHHCCeEEEEEEEecCccC-c----------chhHHHHHHHHHHHHhc--CCCeE
Confidence 45778777777777877777777777666644443333332110 0 00001112222222222 24445
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCcEEEEccCCC
Q 026225 150 EVAVVEGKEKGPAIVEEARKQGVALLVLGQKKR 182 (241)
Q Consensus 150 ~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~~ 182 (241)
-+......... .|++.+++.+.+.+.+|+.+-
T Consensus 238 Vvv~~~~~~~~-~l~~~a~~~g~~~~wigs~~w 269 (403)
T cd06361 238 IVVFARQFHVF-LLFNKAIERNINKVWIASDNW 269 (403)
T ss_pred EEEEeChHHHH-HHHHHHHHhCCCeEEEEECcc
Confidence 44444444444 788888888999999987653
No 110
>TIGR00646 MG010 DNA primase-related protein. The DNA primase DnaG of E. coli and its apparent orthologs in other eubacterial species are approximately 600 residues in length. Within this set, a conspicuous outlier in percent identity, as seen in a UPGMA difference tree, is the branch containing the Mycoplasmas. This lineage is also unique in containing the small, DNA primase-related protein modelled by this alignment, which is homologous to the central third of DNA primase. Several small regions of sequence similarity specifically to Mycoplasma sequences rather than to all DnaG homologs suggests that the divergence of this protein from DnaG post-dated the separation of bacterial lineages. The function of this DNA primase-related protein is unknown.
Probab=45.22 E-value=1.2e+02 Score=25.62 Aligned_cols=36 Identities=17% Similarity=-0.010 Sum_probs=29.9
Q ss_pred CCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEE
Q 026225 71 GRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVY 106 (241)
Q Consensus 71 ~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~Llh 106 (241)
.++|.+|.|++...+.|...+.+.+...+-.+.++.
T Consensus 154 ~~~Iil~~D~D~AG~~Aa~r~~~~L~~~G~~v~vv~ 189 (218)
T TIGR00646 154 IEKIFICFDNDFAGKNAAANLEEILKKAGFITKVIE 189 (218)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 478999999999999999999999887776655543
No 111
>PRK11914 diacylglycerol kinase; Reviewed
Probab=44.94 E-value=1.1e+02 Score=26.61 Aligned_cols=71 Identities=11% Similarity=0.039 Sum_probs=38.2
Q ss_pred HHHHHHHHHhhCCCccEEEEEEcCCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCc
Q 026225 133 VHSLKNMCQQKRPEVQFEVAVVEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADC 212 (241)
Q Consensus 133 l~~~~~~~~~~~~~v~v~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~ 212 (241)
.+++.+.++.. +.++.....+.......+.+.+.+.++|+||+. -|.+.+...+ ..+. ..+.
T Consensus 28 ~~~~~~~l~~~--g~~~~~~~t~~~~~~~~~a~~~~~~~~d~vvv~-GGDGTi~evv--------------~~l~-~~~~ 89 (306)
T PRK11914 28 AERAIARLHHR--GVDVVEIVGTDAHDARHLVAAALAKGTDALVVV-GGDGVISNAL--------------QVLA-GTDI 89 (306)
T ss_pred HHHHHHHHHHc--CCeEEEEEeCCHHHHHHHHHHHHhcCCCEEEEE-CCchHHHHHh--------------HHhc-cCCC
Confidence 33444444443 566665555443334467766667788877653 3444444432 2232 3567
Q ss_pred eEEEEeCCC
Q 026225 213 MAVAVRRKS 221 (241)
Q Consensus 213 pVlvV~~~~ 221 (241)
|+-++|-..
T Consensus 90 ~lgiiP~GT 98 (306)
T PRK11914 90 PLGIIPAGT 98 (306)
T ss_pred cEEEEeCCC
Confidence 777777554
No 112
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=44.80 E-value=1.9e+02 Score=25.38 Aligned_cols=94 Identities=15% Similarity=0.185 Sum_probs=56.0
Q ss_pred CCCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccE
Q 026225 70 SGRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQF 149 (241)
Q Consensus 70 ~~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v 149 (241)
...||.|-+.++.....+|-.+... ....++|.++-...+. +.. .+++ .|+++
T Consensus 83 ~~~ki~vl~Sg~g~nl~~l~~~~~~-g~l~~~i~~visn~~~-----------------~~~-------~A~~--~gIp~ 135 (280)
T TIGR00655 83 KLKRVAILVSKEDHCLGDLLWRWYS-GELDAEIALVISNHED-----------------LRS-------LVER--FGIPF 135 (280)
T ss_pred CCcEEEEEEcCCChhHHHHHHHHHc-CCCCcEEEEEEEcChh-----------------HHH-------HHHH--hCCCE
Confidence 4578999999987777777776443 2345666665553321 111 1222 26776
Q ss_pred EEEEEcC---CCchHHHHHHHHHcCCcEEEEccCCCCchhhHhh
Q 026225 150 EVAVVEG---KEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFM 190 (241)
Q Consensus 150 ~~~~~~G---~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~ 190 (241)
...-... ...+..+.+..+++++|++|+..-.+---..++-
T Consensus 136 ~~~~~~~~~~~~~e~~~~~~l~~~~~Dlivlagym~il~~~~l~ 179 (280)
T TIGR00655 136 HYIPATKDNRVEHEKRQLELLKQYQVDLVVLAKYMQILSPDFVK 179 (280)
T ss_pred EEcCCCCcchhhhHHHHHHHHHHhCCCEEEEeCchhhCCHHHHh
Confidence 5433211 2234578899999999999998765433333443
No 113
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=43.53 E-value=2.9e+02 Score=26.07 Aligned_cols=96 Identities=21% Similarity=0.232 Sum_probs=59.4
Q ss_pred EEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEEEE
Q 026225 74 IMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEVAV 153 (241)
Q Consensus 74 ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~~ 153 (241)
.||.+-+|-..-.+-..|..+-. .+-++.|+..--. ..-+ .++++.+.++. ++++--.-
T Consensus 104 mmvGLQGsGKTTt~~KLA~~lkk-~~~kvllVaaD~~---------------RpAA---~eQL~~La~q~--~v~~f~~~ 162 (451)
T COG0541 104 LMVGLQGSGKTTTAGKLAKYLKK-KGKKVLLVAADTY---------------RPAA---IEQLKQLAEQV--GVPFFGSG 162 (451)
T ss_pred EEEeccCCChHhHHHHHHHHHHH-cCCceEEEecccC---------------ChHH---HHHHHHHHHHc--CCceecCC
Confidence 44557788777777777777665 6666666655211 1222 34455555542 55555441
Q ss_pred EcCCCc--hHHHHHHHHHcCCcEEEEccCCCCchhhHhh
Q 026225 154 VEGKEK--GPAIVEEARKQGVALLVLGQKKRSTTWRLFM 190 (241)
Q Consensus 154 ~~G~~~--~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~ 190 (241)
.+-+|+ .+.=++.+++..+|+||+-+.||.....-++
T Consensus 163 ~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm 201 (451)
T COG0541 163 TEKDPVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELM 201 (451)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccccHHHH
Confidence 122333 2344677788899999999999988887776
No 114
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=42.74 E-value=2.5e+02 Score=25.23 Aligned_cols=33 Identities=12% Similarity=0.173 Sum_probs=24.1
Q ss_pred EEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEc
Q 026225 73 KIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIK 109 (241)
Q Consensus 73 ~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~ 109 (241)
+|+|++.+.-+|.-++..+.+ .+.++..+|+..
T Consensus 1 kVlValSGGvDSsvla~lL~~----~g~~v~~v~i~~ 33 (349)
T cd01998 1 KVVVAMSGGVDSSVAAALLKE----QGYEVIGVFMKN 33 (349)
T ss_pred CEEEEecCCHHHHHHHHHHHH----cCCcEEEEEEec
Confidence 589999998888866655543 356788888754
No 115
>PF04459 DUF512: Protein of unknown function (DUF512); InterPro: IPR007549 This is a domain of uncharacterised prokaryotic proteins. It is often found C-terminal to the radical SAM domain (IPR007197 from INTERPRO).
Probab=42.58 E-value=1.2e+02 Score=25.23 Aligned_cols=82 Identities=21% Similarity=0.276 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHhhCCCccEEEEEEc-----------CCCchHHHHHHHHHcCC-cEEEEccCCCCc-hhhHhhhhcCC
Q 026225 129 GYEFVHSLKNMCQQKRPEVQFEVAVVE-----------GKEKGPAIVEEARKQGV-ALLVLGQKKRST-TWRLFMMWAGN 195 (241)
Q Consensus 129 ~~~~l~~~~~~~~~~~~~v~v~~~~~~-----------G~~~~~~I~~~a~~~~~-dllVmG~~~~~~-~~~~l~~~~~~ 195 (241)
+...++.+.+.+ +..+++++++..+. |--.+..|++..+..+. |.|++-..--.. -..+|-
T Consensus 108 a~~~l~~~~~~l-~~~~~~~v~V~~V~N~fFG~~ItVaGLLTg~Dii~~L~~~~~~d~lllP~~ml~~~~~~fLD----- 181 (204)
T PF04459_consen 108 AYPFLKPLVEKL-NRIPGLEVEVVPVKNRFFGGTITVAGLLTGQDIIEQLKGKELGDLLLLPDVMLRHGEGVFLD----- 181 (204)
T ss_pred HHHHHHHHHHHH-hccCCCeEEEEEeecCCCCCCeEEeeCccHHHHHHHhCcCCCCCEEEECHHHhcCCCCccCC-----
Confidence 344555555555 23356777766555 33345567777765444 888887654322 334454
Q ss_pred CCCCCCHHHHHHhcCCceEEEEeCC
Q 026225 196 RVPGGSFVEYCIQNADCMAVAVRRK 220 (241)
Q Consensus 196 ~~~~Gsv~~~vi~~a~~pVlvV~~~ 220 (241)
+-+.+.+.+...++|.+|+..
T Consensus 182 ----D~t~~el~~~lg~~v~vv~~~ 202 (204)
T PF04459_consen 182 ----DMTLEELEERLGVPVIVVRGP 202 (204)
T ss_pred ----CCcHHHHHHHhCCcEEEeCCC
Confidence 778888999999999999754
No 116
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=42.53 E-value=97 Score=27.22 Aligned_cols=46 Identities=11% Similarity=0.085 Sum_probs=32.2
Q ss_pred HHHHHHHHhhCCCccEEEEEEcCCCchHHHHHHHHHcCCcEEEEccCC
Q 026225 134 HSLKNMCQQKRPEVQFEVAVVEGKEKGPAIVEEARKQGVALLVLGQKK 181 (241)
Q Consensus 134 ~~~~~~~~~~~~~v~v~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~ 181 (241)
+...+..++ .++++.-..+.-+...+.|.++.+++++|+||+-.+.
T Consensus 118 ~~Cl~~Ykq--l~i~a~G~~~~E~eqp~~i~~Ll~~~~PDIlViTGHD 163 (283)
T TIGR02855 118 RKCLKLYKK--IGVPVVGIHCKEKEMPEKVLDLIEEVRPDILVITGHD 163 (283)
T ss_pred HHHHHHHHH--hCCceEEEEecchhchHHHHHHHHHhCCCEEEEeCch
Confidence 333344443 3788876666655555699999999999999996543
No 117
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=42.30 E-value=2.2e+02 Score=24.26 Aligned_cols=48 Identities=13% Similarity=0.132 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHhhCCCccEEEEEEcCCCchHHHHHHHHHcCCcEEEEccC
Q 026225 129 GYEFVHSLKNMCQQKRPEVQFEVAVVEGKEKGPAIVEEARKQGVALLVLGQK 180 (241)
Q Consensus 129 ~~~~l~~~~~~~~~~~~~v~v~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~ 180 (241)
..+.+.++++..+++ +.++.+ -++|.-..+.+. .+.+.++|.+|+|+-
T Consensus 162 ~l~KI~~lr~~~~~~--~~~~~I-eVDGGI~~~ti~-~l~~aGaD~~V~GSa 209 (228)
T PRK08091 162 ILDRVIQVENRLGNR--RVEKLI-SIDGSMTLELAS-YLKQHQIDWVVSGSA 209 (228)
T ss_pred HHHHHHHHHHHHHhc--CCCceE-EEECCCCHHHHH-HHHHCCCCEEEEChh
Confidence 334445555555543 455443 345554443444 556679999999953
No 118
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=41.44 E-value=62 Score=23.99 Aligned_cols=43 Identities=19% Similarity=0.134 Sum_probs=32.3
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcC-CceEEEEeCCC
Q 026225 161 PAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNA-DCMAVAVRRKS 221 (241)
Q Consensus 161 ~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a-~~pVlvV~~~~ 221 (241)
...++.|++.++..||+-+.. |.++..+.+.- +||++++-+..
T Consensus 6 ~aa~~~A~~~~ak~Ivv~T~s------------------G~ta~~isk~RP~~pIiavt~~~ 49 (117)
T PF02887_consen 6 RAAVELAEDLNAKAIVVFTES------------------GRTARLISKYRPKVPIIAVTPNE 49 (117)
T ss_dssp HHHHHHHHHHTESEEEEE-SS------------------SHHHHHHHHT-TSSEEEEEESSH
T ss_pred HHHHHHHHhcCCCEEEEECCC------------------chHHHHHHhhCCCCeEEEEcCcH
Confidence 467888899999999988776 66777777664 69999997654
No 119
>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor. Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes
Probab=41.32 E-value=3e+02 Score=25.60 Aligned_cols=21 Identities=5% Similarity=0.174 Sum_probs=15.5
Q ss_pred HHHHHHHHcCCcEEEEccCCC
Q 026225 162 AIVEEARKQGVALLVLGQKKR 182 (241)
Q Consensus 162 ~I~~~a~~~~~dllVmG~~~~ 182 (241)
.|++.+.+.+.+...+|+.+-
T Consensus 247 ~ll~~a~~~g~~~~wigs~~~ 267 (458)
T cd06375 247 ELLAAAKRLNASFTWVASDGW 267 (458)
T ss_pred HHHHHHHHcCCcEEEEEeccc
Confidence 677778888888777776653
No 120
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=40.35 E-value=1.2e+02 Score=26.15 Aligned_cols=56 Identities=9% Similarity=0.124 Sum_probs=39.0
Q ss_pred HHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeCCCc---------CCCCeEEec
Q 026225 163 IVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRKSK---------KLGGYLITT 231 (241)
Q Consensus 163 I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~~~---------~~~~~li~t 231 (241)
..+..++.++|++|+.+-....- +..-+..++..+.+|++|+.+..- ...||.|-.
T Consensus 52 ~~~~~~~~~pDf~i~isPN~a~P-------------GP~~ARE~l~~~~iP~IvI~D~p~~K~~d~l~~~g~GYIivk 116 (277)
T PRK00994 52 VKKMLEEWKPDFVIVISPNPAAP-------------GPKKAREILKAAGIPCIVIGDAPGKKVKDAMEEQGLGYIIVK 116 (277)
T ss_pred HHHHHHhhCCCEEEEECCCCCCC-------------CchHHHHHHHhcCCCEEEEcCCCccchHHHHHhcCCcEEEEe
Confidence 33455788999999986553222 134577899999999999976542 467887764
No 121
>cd03364 TOPRIM_DnaG_primases TOPRIM_DnaG_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of proteins similar to Escherichia coli DnaG. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. E. coli DnaG is a single subunit enzyme.
Probab=39.70 E-value=92 Score=21.19 Aligned_cols=34 Identities=12% Similarity=0.202 Sum_probs=27.1
Q ss_pred CCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEE
Q 026225 71 GRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVL 104 (241)
Q Consensus 71 ~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~L 104 (241)
.++|+++.|.+.....+.+.+.+.+...+-++.+
T Consensus 43 ~~~vii~~D~D~aG~~a~~~~~~~l~~~g~~~~~ 76 (79)
T cd03364 43 AKEVILAFDGDEAGQKAALRALELLLKLGLNVRV 76 (79)
T ss_pred CCeEEEEECCCHHHHHHHHHHHHHHHHCCCeEEE
Confidence 4899999999998888887777777776655544
No 122
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=39.66 E-value=2.8e+02 Score=24.86 Aligned_cols=34 Identities=15% Similarity=0.010 Sum_probs=23.8
Q ss_pred EEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEc
Q 026225 73 KIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIK 109 (241)
Q Consensus 73 ~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~ 109 (241)
.++|++.+..+|..++..+.. ..+..+.++|+..
T Consensus 61 D~iV~lSGGkDSs~la~ll~~---~~gl~~l~vt~~~ 94 (343)
T TIGR03573 61 DCIIGVSGGKDSTYQAHVLKK---KLGLNPLLVTVDP 94 (343)
T ss_pred CEEEECCCCHHHHHHHHHHHH---HhCCceEEEEECC
Confidence 599999999888877655533 2355666677743
No 123
>PRK05406 LamB/YcsF family protein; Provisional
Probab=39.59 E-value=2.5e+02 Score=24.24 Aligned_cols=124 Identities=10% Similarity=0.065 Sum_probs=74.7
Q ss_pred HHHHHHHHHhhccCCCEEEEEEEEcCCC--CCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEEEEEcC------
Q 026225 85 KGALQWSLTHTVQSQDKVVLVYVIKPSN--NKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEVAVVEG------ 156 (241)
Q Consensus 85 ~~al~~A~~~a~~~~~~l~LlhV~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~~~~G------ 156 (241)
...++.++.+|.+.+..|-. |.-.|+. +......-..++........+..+..+|... |.++..+=-+|
T Consensus 43 p~~M~~tv~lA~~~gV~IGA-HPgypD~~gFGRR~m~~s~~el~~~v~yQigAL~~~a~~~--g~~l~hVKPHGALYN~~ 119 (246)
T PRK05406 43 PAVMRRTVRLAKENGVAIGA-HPGYPDLEGFGRRNMDLSPEELYALVLYQIGALQAIARAA--GGRVSHVKPHGALYNMA 119 (246)
T ss_pred HHHHHHHHHHHHHcCCeEcc-CCCCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHc--CCeeEEeCccHHHHHHH
Confidence 45677777777777754432 3333332 1111222233444445555567788888764 67666543332
Q ss_pred ---CCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEE--EeCCCcCCCCeEEe
Q 026225 157 ---KEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVA--VRRKSKKLGGYLIT 230 (241)
Q Consensus 157 ---~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlv--V~~~~~~~~~~li~ 230 (241)
......|++.++..+.+|++++.. |+..++..+....+++. +-++....+|.|+.
T Consensus 120 ~~d~~~a~av~~ai~~~~~~l~l~~~~-------------------~s~~~~~A~~~Gl~~~~E~FADR~Y~~dG~Lv~ 179 (246)
T PRK05406 120 AKDPALADAVAEAVAAVDPSLILVGLA-------------------GSELIRAAEEAGLRTASEVFADRAYTADGTLVP 179 (246)
T ss_pred hcCHHHHHHHHHHHHHhCCCcEEEecC-------------------ChHHHHHHHHcCCcEEEEEEecCCcCCCCCCcC
Confidence 446668899999999999999854 44556666777777663 44555556666664
No 124
>TIGR02766 crypt_chrom_pln cryptochrome, plant family. At least five major families of cryptochomes and photolyases share FAD cofactor binding, sequence homology, and the ability to react to short wavelengths of visible light. Photolysases are responsible for light-dependent DNA repair by removal of two types of uv-induced DNA dimerizations. Cryptochromes have other functions, often regulatory and often largely unknown, which may include circadian clock entrainment and control of development. Members of this subfamily are known so far only in plants; they may show some photolyase activity in vitro but appear mostly to be regulatory proteins that respond to blue light.
Probab=39.33 E-value=3.3e+02 Score=25.53 Aligned_cols=85 Identities=14% Similarity=0.092 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEEEEEcCCCchHHH
Q 026225 84 AKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEVAVVEGKEKGPAI 163 (241)
Q Consensus 84 s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~~~~G~~~~~~I 163 (241)
...||..|++ .+ .|..|+|.++......... ........+-|..+.+.+... |.++.+.. .|++.+ .|
T Consensus 12 DN~aL~~A~~----~~-~vlpvyi~dp~~~~~~~~~---~~~~~fl~~sL~~L~~~L~~~--G~~L~v~~-~g~~~~-~l 79 (475)
T TIGR02766 12 DNPALAAAAR----AG-PVIPVFVWAPEEEGQYYPG---RVSRWWLKQSLAHLDQSLRSL--GTCLVTIR-STDTVA-AL 79 (475)
T ss_pred hHHHHHHHHh----CC-CEEEEEEechHHhcccccc---HHHHHHHHHHHHHHHHHHHHc--CCceEEEe-CCCHHH-HH
Confidence 3456766653 23 6999999987532111111 111223445566666666653 55554322 466655 99
Q ss_pred HHHHHHcCCcEEEEccC
Q 026225 164 VEEARKQGVALLVLGQK 180 (241)
Q Consensus 164 ~~~a~~~~~dllVmG~~ 180 (241)
.+.+++.+++-|.....
T Consensus 80 ~~l~~~~~i~~v~~~~~ 96 (475)
T TIGR02766 80 LDCVRSTGATRLFFNHL 96 (475)
T ss_pred HHHHHHcCCCEEEEecc
Confidence 99999999999988765
No 125
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=39.23 E-value=93 Score=27.43 Aligned_cols=45 Identities=16% Similarity=0.067 Sum_probs=32.7
Q ss_pred HHHHHHHHhhCCCccEEEEEEcCCCchHHHHHHHHHcCCcEEEEccC
Q 026225 134 HSLKNMCQQKRPEVQFEVAVVEGKEKGPAIVEEARKQGVALLVLGQK 180 (241)
Q Consensus 134 ~~~~~~~~~~~~~v~v~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~ 180 (241)
+...+..++ .++++.-..+.-....+.|.++.+++++|+||+-.+
T Consensus 119 ~~Cl~~Ykq--l~i~a~G~~~~E~eqp~~i~~Ll~~~~PDIlViTGH 163 (287)
T PF05582_consen 119 NKCLKVYKQ--LGIPAVGIHVPEKEQPEKIYRLLEEYRPDILVITGH 163 (287)
T ss_pred HHHHHHHHH--cCCceEEEEechHHhhHHHHHHHHHcCCCEEEEeCc
Confidence 333444444 378888777765555669999999999999999654
No 126
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=38.97 E-value=2.6e+02 Score=24.57 Aligned_cols=36 Identities=22% Similarity=0.336 Sum_probs=27.8
Q ss_pred CccEEEEEEcCC---CchHHHHHHHHHcCCcEEEEccCC
Q 026225 146 EVQFEVAVVEGK---EKGPAIVEEARKQGVALLVLGQKK 181 (241)
Q Consensus 146 ~v~v~~~~~~G~---~~~~~I~~~a~~~~~dllVmG~~~ 181 (241)
|+++...-+... +.+..+.+..+++++|+||+...-
T Consensus 138 ~IPfhhip~~~~~k~e~E~~~~~ll~~~~~DlvVLARYM 176 (287)
T COG0788 138 DIPFHHIPVTKENKAEAEARLLELLEEYGADLVVLARYM 176 (287)
T ss_pred CCCeeeccCCCCcchHHHHHHHHHHHHhCCCEEeehhhH
Confidence 788877766544 456689999999999999997543
No 127
>COG0415 PhrB Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair]
Probab=38.96 E-value=3.5e+02 Score=25.68 Aligned_cols=120 Identities=11% Similarity=0.095 Sum_probs=67.1
Q ss_pred cCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEEEEEcCCC
Q 026225 79 DSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEVAVVEGKE 158 (241)
Q Consensus 79 D~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~~~~G~~ 158 (241)
|.--+...||.+|+..... .+.+|++.++.... ........-..+-|..+.+.+.+ ..+...+..|++
T Consensus 11 DLR~~DN~aL~~A~~~~~~---~~~~vfi~~~~~~~-----~~~~~~~~Fl~~sL~~L~~~L~~----~gi~L~v~~~~~ 78 (461)
T COG0415 11 DLRLTDNAALAAACQSGQP---VIIAVFILDPEQLG-----HASPRHAAFLLQSLQALQQSLAE----LGIPLLVREGDP 78 (461)
T ss_pred ccccCChHHHHHHHhcCCC---ceEEEEEechhhcc-----ccCHHHHHHHHHHHHHHHHHHHH----cCCceEEEeCCH
Confidence 3333445577777665432 23667777765422 11112223334445555555554 446667888997
Q ss_pred chHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeCCCc
Q 026225 159 KGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRKSK 222 (241)
Q Consensus 159 ~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~~~ 222 (241)
.. .|.+++++.+++-|+....- ....+.- -.....-+....+-+..+....-
T Consensus 79 ~~-~l~~~~~~~~~~~v~~n~~~-~~~~~~r----------D~al~~~l~~~gi~~~~~~d~~l 130 (461)
T COG0415 79 EQ-VLPELAKQLAATTVFWNRDY-EEWERQR----------DAALAQPLTEVGIAVHSFWDALL 130 (461)
T ss_pred HH-HHHHHHHHhCcceEEeeeee-chhHHHH----------HHHHHHHHHhcCceEEEeccccc
Confidence 66 99999999998888776543 3222221 12334445555666666555443
No 128
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=37.85 E-value=2.8e+02 Score=24.29 Aligned_cols=98 Identities=13% Similarity=0.191 Sum_probs=58.0
Q ss_pred CCCCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCcc
Q 026225 69 SSGRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQ 148 (241)
Q Consensus 69 ~~~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~ 148 (241)
....||.|-+.++-....||-.+... ...+.+|.+|-...+ .+. ..+++. |++
T Consensus 87 ~~~~ri~vl~Sg~gsnl~al~~~~~~-~~~~~~i~~visn~~-----------------~~~-------~lA~~~--gIp 139 (286)
T PRK06027 87 AERKRVVILVSKEDHCLGDLLWRWRS-GELPVEIAAVISNHD-----------------DLR-------SLVERF--GIP 139 (286)
T ss_pred ccCcEEEEEEcCCCCCHHHHHHHHHc-CCCCcEEEEEEEcCh-----------------hHH-------HHHHHh--CCC
Confidence 34568888888876666676665443 234567666655332 111 113332 677
Q ss_pred EEEEEEc---CCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhc
Q 026225 149 FEVAVVE---GKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWA 193 (241)
Q Consensus 149 v~~~~~~---G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~ 193 (241)
+...-.. ..+.+..+.+..+++++|++|+..-.+---..++-.|.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~l~~~~~Dlivlagy~~il~~~~l~~~~ 187 (286)
T PRK06027 140 FHHVPVTKETKAEAEARLLELIDEYQPDLVVLARYMQILSPDFVARFP 187 (286)
T ss_pred EEEeccCccccchhHHHHHHHHHHhCCCEEEEecchhhcCHHHHhhcc
Confidence 6553221 12234478999999999999998776644444554444
No 129
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=37.83 E-value=3.4e+02 Score=25.33 Aligned_cols=93 Identities=18% Similarity=0.136 Sum_probs=51.4
Q ss_pred EEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEEEEE
Q 026225 75 MIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEVAVV 154 (241)
Q Consensus 75 LVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~~~ 154 (241)
++..-++-.+..+...|..+..+.+.++.++..-.. ...+. ++++..+.. .++++.....
T Consensus 104 ~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~---------------R~~a~---~QL~~~a~~--~gvp~~~~~~ 163 (428)
T TIGR00959 104 MVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLY---------------RPAAI---EQLKVLGQQ--VGVPVFALGK 163 (428)
T ss_pred EECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecccc---------------chHHH---HHHHHHHHh--cCCceEecCC
Confidence 333455667777888887766456777777765321 11122 223333332 2555543222
Q ss_pred cCCCch---HHHHHHHHHcCCcEEEEccCCCCchhhH
Q 026225 155 EGKEKG---PAIVEEARKQGVALLVLGQKKRSTTWRL 188 (241)
Q Consensus 155 ~G~~~~---~~I~~~a~~~~~dllVmG~~~~~~~~~~ 188 (241)
+.... ...++.+...++|+||+-+.++......
T Consensus 164 -~~~P~~i~~~al~~~~~~~~DvVIIDTaGr~~~d~~ 199 (428)
T TIGR00959 164 -GQSPVEIARRALEYAKENGFDVVIVDTAGRLQIDEE 199 (428)
T ss_pred -CCCHHHHHHHHHHHHHhcCCCEEEEeCCCccccCHH
Confidence 22222 1234556677899999999998665443
No 130
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=37.68 E-value=3.6e+02 Score=25.49 Aligned_cols=37 Identities=5% Similarity=0.083 Sum_probs=29.7
Q ss_pred CCCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcC
Q 026225 70 SGRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKP 110 (241)
Q Consensus 70 ~~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~ 110 (241)
...++|+.+.+.-+|.-|+-++... |.+|.+||+...
T Consensus 176 ~~gk~lvllSGGiDS~va~~~~~kr----G~~v~~l~f~~g 212 (482)
T PRK01269 176 TQEDVLSLISGGFDSGVASYMLMRR----GSRVHYCFFNLG 212 (482)
T ss_pred ccCeEEEEEcCCchHHHHHHHHHHc----CCEEEEEEEecC
Confidence 4578999999999998777666553 779999999754
No 131
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=37.41 E-value=3e+02 Score=24.55 Aligned_cols=69 Identities=16% Similarity=0.123 Sum_probs=39.1
Q ss_pred HHHHHHHHHhhCCCccEEEEEEcCCCchH---HHHHHHHHcCCcEEE-EccCCCCchhhHhhhhcCCCCCCCCHHHHHHh
Q 026225 133 VHSLKNMCQQKRPEVQFEVAVVEGKEKGP---AIVEEARKQGVALLV-LGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQ 208 (241)
Q Consensus 133 l~~~~~~~~~~~~~v~v~~~~~~G~~~~~---~I~~~a~~~~~dllV-mG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~ 208 (241)
.+++.+.++.. ++.++..+..|++..+ .+.+.+++.++|.|| +|.-. . ..++..+..
T Consensus 38 ~~~v~~~l~~~--~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGs--~---------------~D~aK~ia~ 98 (349)
T cd08550 38 RPRFEAALAKS--IIVVDVIVFGGECSTEEVVKALCGAEEQEADVIIGVGGGK--T---------------LDTAKAVAD 98 (349)
T ss_pred HHHHHHHHHhc--CCeeEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEecCcH--H---------------HHHHHHHHH
Confidence 34555555543 5666555556664333 456666778999877 65221 1 123333333
Q ss_pred cCCceEEEEeCC
Q 026225 209 NADCMAVAVRRK 220 (241)
Q Consensus 209 ~a~~pVlvV~~~ 220 (241)
....|++.||--
T Consensus 99 ~~~~p~i~VPTt 110 (349)
T cd08550 99 RLDKPIVIVPTI 110 (349)
T ss_pred HcCCCEEEeCCc
Confidence 447899999854
No 132
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=37.40 E-value=2.2e+02 Score=23.06 Aligned_cols=33 Identities=9% Similarity=0.057 Sum_probs=23.0
Q ss_pred EEEEeecCC-HHHHHHHHHHHHhhccCCCEEEEE
Q 026225 73 KIMIVVDSS-NEAKGALQWSLTHTVQSQDKVVLV 105 (241)
Q Consensus 73 ~ILVavD~s-~~s~~al~~A~~~a~~~~~~l~Ll 105 (241)
||++++-+| ......++.+..+..+.+.+|.++
T Consensus 1 ~i~~gitGsg~~l~e~v~~l~~L~~~~g~eV~vv 34 (174)
T TIGR02699 1 RIAWGITGSGDKLPETYSIMKDVKNRYGDEIDVF 34 (174)
T ss_pred CEEEEEEccHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 588888888 444557777777776677776544
No 133
>PF03746 LamB_YcsF: LamB/YcsF family; InterPro: IPR005501 This entry represents the uncharacterised protein family UPF0271, including LamB. The lam locus of Emericella nidulans (Aspergillus nidulans) consists of two divergently transcribed genes, lamA and lamB, involved in the utilization of lactams such as 2-pyrrolidinone. Both genes are under the control of the positive regulatory gene amdR and are subject to carbon and nitrogen metabolite repression []. The exact molecular function of the proteins in this family is unknown.; PDB: 1V6T_A 1XW8_A 2XU2_A 2DFA_A.
Probab=36.65 E-value=2.8e+02 Score=23.90 Aligned_cols=138 Identities=13% Similarity=0.084 Sum_probs=73.0
Q ss_pred EEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCC--CCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEE
Q 026225 73 KIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQ--ATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFE 150 (241)
Q Consensus 73 ~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~ 150 (241)
-.=||..+.-.....++.++.+|.+.+..|- -|.-.|+.... ....-..++........+..+..++... |.++.
T Consensus 29 saNIACG~HAGDp~~M~~tv~lA~~~gV~iG-AHPsyPD~~gFGRr~m~~s~~el~~~v~yQigaL~~~a~~~--g~~l~ 105 (242)
T PF03746_consen 29 SANIACGFHAGDPETMRRTVRLAKEHGVAIG-AHPSYPDREGFGRRSMDISPEELRDSVLYQIGALQAIAAAE--GVPLH 105 (242)
T ss_dssp EEEEE-SSSS--HHHHHHHHHHHHHTT-EEE-EE---S-TTTTT-S-----HHHHHHHHHHHHHHHHHHHHHT--T--EE
T ss_pred hHHHhhcccccCHHHHHHHHHHHHHcCCEec-cCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHc--CCeeE
Confidence 4456666655556677788888888875543 34444443211 1222233444444555566777777764 77776
Q ss_pred EEEEcC---------CCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEE--EeC
Q 026225 151 VAVVEG---------KEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVA--VRR 219 (241)
Q Consensus 151 ~~~~~G---------~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlv--V~~ 219 (241)
.+=-.| ......|++.++..+++|.++|.. ||..++..+....+++. +-+
T Consensus 106 hVKPHGALYn~~~~d~~lA~~i~~ai~~~~~~l~l~~~a-------------------gs~~~~~A~~~Gl~~~~E~FAD 166 (242)
T PF03746_consen 106 HVKPHGALYNMAAKDEELARAIAEAIKAFDPDLPLYGLA-------------------GSELEKAAKELGLPVVFEAFAD 166 (242)
T ss_dssp EE---HHHHHHHHH-HHHHHHHHHHHHHH-TT-EEEEET-------------------TSHHHHHHHHCT--EEEEEETT
T ss_pred EecccHHHHHHHhcCHHHHHHHHHHHHHhCCCcEEEEcC-------------------CcHHHHHHHHCCCcEEEEEEEc
Confidence 553333 345668999999999999999865 45566677777777663 345
Q ss_pred CCcCCCCeEEecc
Q 026225 220 KSKKLGGYLITTK 232 (241)
Q Consensus 220 ~~~~~~~~li~t~ 232 (241)
+....+|.|+..+
T Consensus 167 R~Y~~dG~Lv~R~ 179 (242)
T PF03746_consen 167 RAYDDDGSLVPRS 179 (242)
T ss_dssp BEB-TTSSBEETT
T ss_pred ccCcCCCCEeecC
Confidence 5555666666543
No 134
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=36.41 E-value=90 Score=30.12 Aligned_cols=66 Identities=6% Similarity=0.058 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhhCCCccEEEEEEcCCCchHHHHHH----HHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHH
Q 026225 132 FVHSLKNMCQQKRPEVQFEVAVVEGKEKGPAIVEE----ARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCI 207 (241)
Q Consensus 132 ~l~~~~~~~~~~~~~v~v~~~~~~G~~~~~~I~~~----a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi 207 (241)
+.+.+.+.+.++ +..+++.++.+.- + .-++. ....++|.||=. |+++.+|-
T Consensus 25 l~~~~~~i~~~~--~~~~~~~~~~~~~-~-~~v~~~~~~~~~~~~dviIsr---------------------G~ta~~i~ 79 (538)
T PRK15424 25 LFELFRDISLEF--DHLANITPIQLGF-E-KAVTYIRKRLATERCDAIIAA---------------------GSNGAYLK 79 (538)
T ss_pred HHHHHHHHHHhc--CCCceEEehhhhH-H-HHHHHHHHHHhhCCCcEEEEC---------------------chHHHHHH
Confidence 444455556554 4455555555442 2 22333 334578888742 88999999
Q ss_pred hcCCceEEEEeCCCc
Q 026225 208 QNADCMAVAVRRKSK 222 (241)
Q Consensus 208 ~~a~~pVlvV~~~~~ 222 (241)
++.++||+.++-...
T Consensus 80 ~~~~iPVv~i~~s~~ 94 (538)
T PRK15424 80 SRLSVPVILIKPSGF 94 (538)
T ss_pred hhCCCCEEEecCCHh
Confidence 999999999986653
No 135
>PRK05920 aromatic acid decarboxylase; Validated
Probab=36.29 E-value=83 Score=26.26 Aligned_cols=36 Identities=14% Similarity=0.137 Sum_probs=27.3
Q ss_pred CCCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEE
Q 026225 70 SGRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVY 106 (241)
Q Consensus 70 ~~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~Llh 106 (241)
|.++|+++|-++..+.++++....+.. .+.+|.++-
T Consensus 2 ~~krIllgITGsiaa~ka~~lvr~L~~-~g~~V~vi~ 37 (204)
T PRK05920 2 KMKRIVLAITGASGAIYGVRLLECLLA-ADYEVHLVI 37 (204)
T ss_pred CCCEEEEEEeCHHHHHHHHHHHHHHHH-CCCEEEEEE
Confidence 568999999999999888888776654 466654443
No 136
>PRK08349 hypothetical protein; Validated
Probab=36.28 E-value=2.3e+02 Score=22.95 Aligned_cols=34 Identities=18% Similarity=0.081 Sum_probs=26.7
Q ss_pred CEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEc
Q 026225 72 RKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIK 109 (241)
Q Consensus 72 ~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~ 109 (241)
.++++++.+..+|.-++.++.. .+.+|..+|+..
T Consensus 1 ~~~vvllSGG~DS~v~~~~l~~----~g~~v~av~~d~ 34 (198)
T PRK08349 1 MKAVALLSSGIDSPVAIYLMLR----RGVEVYPVHFRQ 34 (198)
T ss_pred CcEEEEccCChhHHHHHHHHHH----cCCeEEEEEEeC
Confidence 3689999999999877765543 467999999964
No 137
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=35.67 E-value=96 Score=22.88 Aligned_cols=69 Identities=7% Similarity=0.004 Sum_probs=39.5
Q ss_pred HHHHHHHHHhhCCCccEEEEEEcCCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCc
Q 026225 133 VHSLKNMCQQKRPEVQFEVAVVEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADC 212 (241)
Q Consensus 133 l~~~~~~~~~~~~~v~v~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~ 212 (241)
+..+++.++.+ |+++++.-. . .. .+.++....++|+|++|.+-+-... -...+.....+
T Consensus 18 a~k~k~~~~e~--gi~~~i~a~--~-~~-e~~~~~~~~~~DvIll~PQi~~~~~---------------~i~~~~~~~~i 76 (104)
T PRK09590 18 AKKTTEYLKEQ--GKDIEVDAI--T-AT-EGEKAIAAAEYDLYLVSPQTKMYFK---------------QFEEAGAKVGK 76 (104)
T ss_pred HHHHHHHHHHC--CCceEEEEe--c-HH-HHHHhhccCCCCEEEEChHHHHHHH---------------HHHHHhhhcCC
Confidence 34455556654 666553322 2 22 4555555567999999865432221 33445555688
Q ss_pred eEEEEeCCCc
Q 026225 213 MAVAVRRKSK 222 (241)
Q Consensus 213 pVlvV~~~~~ 222 (241)
||.+++....
T Consensus 77 pv~~I~~~~Y 86 (104)
T PRK09590 77 PVVQIPPQAY 86 (104)
T ss_pred CEEEeCHHHc
Confidence 9999876543
No 138
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=35.65 E-value=85 Score=24.80 Aligned_cols=20 Identities=10% Similarity=0.195 Sum_probs=10.6
Q ss_pred HHHHHHHHcCCcEEEEccCC
Q 026225 162 AIVEEARKQGVALLVLGQKK 181 (241)
Q Consensus 162 ~I~~~a~~~~~dllVmG~~~ 181 (241)
.|.++++++++++|++|..+
T Consensus 54 ~l~~~i~~~kP~vI~v~g~~ 73 (150)
T PF14639_consen 54 RLKKFIEKHKPDVIAVGGNS 73 (150)
T ss_dssp HHHHHHHHH--SEEEE--SS
T ss_pred HHHHHHHHcCCeEEEEcCCC
Confidence 45566667777777775543
No 139
>PRK00861 putative lipid kinase; Reviewed
Probab=35.60 E-value=2.5e+02 Score=24.32 Aligned_cols=59 Identities=14% Similarity=0.177 Sum_probs=35.3
Q ss_pred ccEEEEEEcCCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeCCC
Q 026225 147 VQFEVAVVEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRKS 221 (241)
Q Consensus 147 v~v~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~~ 221 (241)
.+++............+.+.+...++|+||+. -|.+.+.. ++..++ ...+|+-++|-+.
T Consensus 33 ~~~~~~~t~~~~~a~~~a~~~~~~~~d~vv~~-GGDGTl~e--------------vv~~l~-~~~~~lgviP~GT 91 (300)
T PRK00861 33 MDLDIYLTTPEIGADQLAQEAIERGAELIIAS-GGDGTLSA--------------VAGALI-GTDIPLGIIPRGT 91 (300)
T ss_pred CceEEEEccCCCCHHHHHHHHHhcCCCEEEEE-CChHHHHH--------------HHHHHh-cCCCcEEEEcCCc
Confidence 55666555555445578877777788877653 34445544 333343 3467777877653
No 140
>cd03557 L-arabinose_isomerase L-Arabinose isomerase (AI) catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion into D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=34.75 E-value=2.6e+02 Score=26.60 Aligned_cols=84 Identities=15% Similarity=0.071 Sum_probs=48.4
Q ss_pred CchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEEEEEcCCCchHHHHHHHHHc----CCcEEEEccCCCCchhhHhhhh
Q 026225 117 TGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEVAVVEGKEKGPAIVEEARKQ----GVALLVLGQKKRSTTWRLFMMW 192 (241)
Q Consensus 117 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~~~~G~~~~~~I~~~a~~~----~~dllVmG~~~~~~~~~~l~~~ 192 (241)
++++..++..+.++++.+.+... ..++++++...=-.-.+.|.+..++. ++|.||+-....+.-+.+
T Consensus 13 yg~~~l~~~~~~~~~i~~~l~~~-----~~~~~~v~~~~~v~~~~~i~~~~~~~~~~~~~dgvi~~m~TFs~a~~~---- 83 (484)
T cd03557 13 YGEEALKQVAAHSREIVDGLNAS-----GKLPVKIVFKPVLTTPDEILAVCREANADDNCAGVITWMHTFSPAKMW---- 83 (484)
T ss_pred CChHHHHHHHHHHHHHHHHhccc-----CCCCeEEEEccccCCHHHHHHHHHHccccCCccEEEEccCCCchHHHH----
Confidence 34554544444444443333221 12444444433222233677777764 599999988776665433
Q ss_pred cCCCCCCCCHHHHHHhcCCceEEEEeCC
Q 026225 193 AGNRVPGGSFVEYCIQNADCMAVAVRRK 220 (241)
Q Consensus 193 ~~~~~~~Gsv~~~vi~~a~~pVlvV~~~ 220 (241)
-.+++...+|||+...+
T Consensus 84 -----------i~~~~~l~~PvL~~~~q 100 (484)
T cd03557 84 -----------IAGLTALQKPLLHLHTQ 100 (484)
T ss_pred -----------HHHHHHcCCCEEEEccC
Confidence 34578889999999766
No 141
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=34.68 E-value=3.3e+02 Score=24.18 Aligned_cols=113 Identities=12% Similarity=0.079 Sum_probs=57.2
Q ss_pred HHHHhhccCCCEEEEEEEEcCCCC--CCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEEEEEcCCCc----hHHH
Q 026225 90 WSLTHTVQSQDKVVLVYVIKPSNN--KQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEVAVVEGKEK----GPAI 163 (241)
Q Consensus 90 ~A~~~a~~~~~~l~LlhV~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~~~~G~~~----~~~I 163 (241)
.|+..+...+....=++.--|... ....+....+ ..+...+.++.+.+.+ ++++.+.+..|-.. ...+
T Consensus 81 ~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~-~p~~~~eiv~av~~a~-----d~pv~vKiR~G~~~~~~~~~~~ 154 (321)
T PRK10415 81 DAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQ-YPDLVKSILTEVVNAV-----DVPVTLKIRTGWAPEHRNCVEI 154 (321)
T ss_pred HHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhc-CHHHHHHHHHHHHHhc-----CCceEEEEEccccCCcchHHHH
Confidence 344444455655555555444321 1122222222 2344555555554433 46677777666432 1256
Q ss_pred HHHHHHcCCcEEEEccCCCCch-hhHhhhhcCCCCCCCCHHHHHHhcCCceEEEE
Q 026225 164 VEEARKQGVALLVLGQKKRSTT-WRLFMMWAGNRVPGGSFVEYCIQNADCMAVAV 217 (241)
Q Consensus 164 ~~~a~~~~~dllVmG~~~~~~~-~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV 217 (241)
.+.+++.++|.|.+-.+.+... .+... =....++.++.++||+..
T Consensus 155 a~~le~~G~d~i~vh~rt~~~~~~G~a~---------~~~i~~ik~~~~iPVI~n 200 (321)
T PRK10415 155 AQLAEDCGIQALTIHGRTRACLFNGEAE---------YDSIRAVKQKVSIPVIAN 200 (321)
T ss_pred HHHHHHhCCCEEEEecCccccccCCCcC---------hHHHHHHHHhcCCcEEEe
Confidence 6667788999998865543211 11000 124455666677887765
No 142
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=34.13 E-value=85 Score=25.75 Aligned_cols=34 Identities=9% Similarity=0.098 Sum_probs=27.0
Q ss_pred CEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEE
Q 026225 72 RKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLV 105 (241)
Q Consensus 72 ~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~Ll 105 (241)
++|+++|-+|..+.++++.+..+.+..+.+|.++
T Consensus 2 k~IllgVTGsiaa~ka~~l~~~L~k~~g~~V~vv 35 (185)
T PRK06029 2 KRLIVGISGASGAIYGVRLLQVLRDVGEIETHLV 35 (185)
T ss_pred CEEEEEEECHHHHHHHHHHHHHHHhhcCCeEEEE
Confidence 6899999999999999999888765456665444
No 143
>PRK13054 lipid kinase; Reviewed
Probab=34.00 E-value=3.2e+02 Score=23.77 Aligned_cols=61 Identities=23% Similarity=0.097 Sum_probs=35.2
Q ss_pred CccEEEEEEcCCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhc---CCceEEEEeCCC
Q 026225 146 EVQFEVAVVEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQN---ADCMAVAVRRKS 221 (241)
Q Consensus 146 ~v~v~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~---a~~pVlvV~~~~ 221 (241)
+++++............+.+.+...++|.||+. -|.+.+.. ++..++.. ..+|+-++|-+.
T Consensus 31 g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vvv~-GGDGTl~e--------------vv~~l~~~~~~~~~~lgiiP~GT 94 (300)
T PRK13054 31 GHTLHVRVTWEKGDAARYVEEALALGVATVIAG-GGDGTINE--------------VATALAQLEGDARPALGILPLGT 94 (300)
T ss_pred CCEEEEEEecCCCcHHHHHHHHHHcCCCEEEEE-CCccHHHH--------------HHHHHHhhccCCCCcEEEEeCCc
Confidence 667666555433334467777666678877654 34445544 33444432 257888887654
No 144
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=33.24 E-value=1.8e+02 Score=27.95 Aligned_cols=35 Identities=14% Similarity=0.174 Sum_probs=27.7
Q ss_pred HHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeCCCc
Q 026225 167 ARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRKSK 222 (241)
Q Consensus 167 a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~~~ 222 (241)
....++|.||=. |++++.|-++.++||+-++-...
T Consensus 50 ~~~~~~dviIsr---------------------G~ta~~i~~~~~iPVv~i~~s~~ 84 (526)
T TIGR02329 50 LGAERCDVVVAG---------------------GSNGAYLKSRLSLPVIVIKPTGF 84 (526)
T ss_pred HHhCCCcEEEEC---------------------chHHHHHHHhCCCCEEEecCChh
Confidence 445688888742 77999999999999999976653
No 145
>COG0452 Dfp Phosphopantothenoylcysteine synthetase/decarboxylase [Coenzyme metabolism]
Probab=33.21 E-value=2.9e+02 Score=25.49 Aligned_cols=120 Identities=15% Similarity=0.119 Sum_probs=64.1
Q ss_pred CCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEE
Q 026225 71 GRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFE 150 (241)
Q Consensus 71 ~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~ 150 (241)
.++|+|+|.++-.+.+++..+..+ .+.|+++..+-.-....+.. ... +.... +-.+.
T Consensus 4 ~k~ill~v~gsiaayk~~~l~r~L-~~~ga~v~vvmt~~a~~fv~-----------p~~------~~~~s-----~~~v~ 60 (392)
T COG0452 4 GKRILLGVTGSIAAYKSVELVRLL-RRSGAEVRVVMTESARKFIT-----------PLT------FQALS-----GNPVY 60 (392)
T ss_pred CceEEEEecCchhhhhHHHHHHHH-hhCCCeeEEEcchhhhhhcC-----------ccc------HHHhh-----CCCcc
Confidence 359999999999999898876444 67777776665422111111 010 11111 11222
Q ss_pred EEEEcCC-CchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeCCCc
Q 026225 151 VAVVEGK-EKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRKSK 222 (241)
Q Consensus 151 ~~~~~G~-~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~~~ 222 (241)
. ..+.. ...-.=+++++ .+|++++.......+.++-. .+.-+.+...+-.+.+|+++.+--..
T Consensus 61 t-~~~~~~~~~~~HI~l~~--~adl~lvaPaTan~i~Kla~------g~aD~~~t~~~~a~~~p~~~aPamn~ 124 (392)
T COG0452 61 T-LLDEELTGSVEHIELAR--WADLLLVAPATANTIAKLAV------GIADNLSTTTLLAAKAPLVLAPAMNV 124 (392)
T ss_pred c-cccccccccccHhhhhh--ccCEEEecCCChhHHHHHHH------hhhccHHHHHHHHhcCcEEEecCcCH
Confidence 2 22211 11112344444 78999988766655555432 01123444555666779999876543
No 146
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=33.13 E-value=2e+02 Score=25.80 Aligned_cols=80 Identities=16% Similarity=0.206 Sum_probs=46.4
Q ss_pred EEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEEE
Q 026225 73 KIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEVA 152 (241)
Q Consensus 73 ~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~ 152 (241)
...|.+..++.-= =.+|.++|+ .|-+|.|+.= .++.|++.+..+++.. ++++.++
T Consensus 50 ~WAVVTGaTDGIG--KayA~eLAk-rG~nvvLIsR---------------------t~~KL~~v~kEI~~~~-~vev~~i 104 (312)
T KOG1014|consen 50 SWAVVTGATDGIG--KAYARELAK-RGFNVVLISR---------------------TQEKLEAVAKEIEEKY-KVEVRII 104 (312)
T ss_pred CEEEEECCCCcch--HHHHHHHHH-cCCEEEEEeC---------------------CHHHHHHHHHHHHHHh-CcEEEEE
Confidence 5666655543321 135677775 5566665532 2234455555444432 4777777
Q ss_pred EEc---CCCchHHHHHHHHHcCCcEEEE
Q 026225 153 VVE---GKEKGPAIVEEARKQGVALLVL 177 (241)
Q Consensus 153 ~~~---G~~~~~~I~~~a~~~~~dllVm 177 (241)
.++ ++..-+.|.+.....++.+||=
T Consensus 105 ~~Dft~~~~~ye~i~~~l~~~~VgILVN 132 (312)
T KOG1014|consen 105 AIDFTKGDEVYEKLLEKLAGLDVGILVN 132 (312)
T ss_pred EEecCCCchhHHHHHHHhcCCceEEEEe
Confidence 776 3333457888888888888873
No 147
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=33.00 E-value=2.3e+02 Score=24.32 Aligned_cols=49 Identities=14% Similarity=0.124 Sum_probs=32.7
Q ss_pred HHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeCCCcCCC
Q 026225 162 AIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRKSKKLG 225 (241)
Q Consensus 162 ~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~~~~~~ 225 (241)
.=....+++++|.||.=..|..+....+ ...+...+||++++++.-..+
T Consensus 185 ~n~al~~~~~i~~lVtK~SG~~g~~eKi---------------~AA~~lgi~vivI~RP~~~~~ 233 (249)
T PF02571_consen 185 LNRALFRQYGIDVLVTKESGGSGFDEKI---------------EAARELGIPVIVIKRPPEPYG 233 (249)
T ss_pred HHHHHHHHcCCCEEEEcCCCchhhHHHH---------------HHHHHcCCeEEEEeCCCCCCC
Confidence 3455668889999998555544333322 256678999999998876433
No 148
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=32.85 E-value=3.7e+02 Score=24.27 Aligned_cols=135 Identities=10% Similarity=0.098 Sum_probs=72.8
Q ss_pred EEEEeecC-----CH---HHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhC
Q 026225 73 KIMIVVDS-----SN---EAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKR 144 (241)
Q Consensus 73 ~ILVavD~-----s~---~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 144 (241)
-+++.++. +. .....+.|..+.+.+.|+.-+-++|...+. ...+.+.+..+.+.++...|..+
T Consensus 85 GLil~~e~tg~d~t~~gr~~~~~~~~sve~a~~~GAdAVk~lv~~~~d--------~~~~~~~~~~~~l~rv~~ec~~~- 155 (340)
T PRK12858 85 GLLLSYEKTGYDATAPGRLPDLLDNWSVRRIKEAGADAVKLLLYYRPD--------EDDAINDRKHAFVERVGAECRAN- 155 (340)
T ss_pred CeEEEecccccccCCCCCCccccccccHHHHHHcCCCEEEEEEEeCCC--------cchHHHHHHHHHHHHHHHHHHHc-
Confidence 37777662 11 234567787888888888776666654321 01122455666788888889886
Q ss_pred CCccEEEEE--Ec-CC----------CchHHHHHHHH-----HcCCcEEEEccCCCC-chhhHhh-hhcCCCCCCC---C
Q 026225 145 PEVQFEVAV--VE-GK----------EKGPAIVEEAR-----KQGVALLVLGQKKRS-TTWRLFM-MWAGNRVPGG---S 201 (241)
Q Consensus 145 ~~v~v~~~~--~~-G~----------~~~~~I~~~a~-----~~~~dllVmG~~~~~-~~~~~l~-~~~~~~~~~G---s 201 (241)
|+++-..+ .. |. ...+.|...++ +.++|++=+-..... ..+++-- ..++ +.. .
T Consensus 156 -giPlllE~l~y~~~~~~~~~~~~a~~~p~~V~~a~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~---~~~~~~~ 231 (340)
T PRK12858 156 -DIPFFLEPLTYDGKGSDKKAEEFAKVKPEKVIKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAY---TQEEAFK 231 (340)
T ss_pred -CCceEEEEeccCCCccccccccccccCHHHHHHHHHHHhhhccCCeEEEeeCCCCcccccccccccccc---cHHHHHH
Confidence 77765542 21 11 11123433333 488998877554331 1111000 0000 000 1
Q ss_pred HHHHHHhcCCceEEEEeCC
Q 026225 202 FVEYCIQNADCMAVAVRRK 220 (241)
Q Consensus 202 v~~~vi~~a~~pVlvV~~~ 220 (241)
.-..+...++.|+++..-+
T Consensus 232 ~f~~~~~a~~~P~vvlsgG 250 (340)
T PRK12858 232 LFREQSDATDLPFIFLSAG 250 (340)
T ss_pred HHHHHHhhCCCCEEEECCC
Confidence 3355677789999998544
No 149
>PRK04148 hypothetical protein; Provisional
Probab=32.76 E-value=1.8e+02 Score=22.58 Aligned_cols=37 Identities=19% Similarity=0.267 Sum_probs=27.2
Q ss_pred CccEEEEEEcCCCchHHHHHHHHHcCCcEEEEccCCC
Q 026225 146 EVQFEVAVVEGKEKGPAIVEEARKQGVALLVLGQKKR 182 (241)
Q Consensus 146 ~v~v~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~~ 182 (241)
+.++-..+.-..+..+-|++.|++.++|++|.--.+.
T Consensus 77 ~a~liysirpp~el~~~~~~la~~~~~~~~i~~l~~e 113 (134)
T PRK04148 77 NAKLIYSIRPPRDLQPFILELAKKINVPLIIKPLSGE 113 (134)
T ss_pred cCCEEEEeCCCHHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 4556666666777777889999999999998754443
No 150
>cd07044 CofD_YvcK Family of CofD-like proteins and proteins related to YvcK. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis. YvcK from Bacillus subtilis is a member of a family of mostly uncharacterized proteins and has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and pentose phosphate pathway. Both families appear to have a conserved phosphate binding site, but ha
Probab=32.51 E-value=1.4e+02 Score=26.58 Aligned_cols=64 Identities=13% Similarity=0.138 Sum_probs=40.9
Q ss_pred CccEEEEEEcCC---CchHHHHHHHHHcCCcEEEEccCCC--CchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeCC
Q 026225 146 EVQFEVAVVEGK---EKGPAIVEEARKQGVALLVLGQKKR--STTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRK 220 (241)
Q Consensus 146 ~v~v~~~~~~G~---~~~~~I~~~a~~~~~dllVmG~~~~--~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~ 220 (241)
+.+++-+..++. ...+..++.++ ++|+||+|.-.- |-+-.++. ..+.+ .+++++||++.|.+-
T Consensus 148 ~~~I~~v~l~~~~~~~~~~~~l~AI~--~ADlIvlgPGSlyTSI~P~Llv---------~gi~e-Ai~~s~a~kV~V~ni 215 (309)
T cd07044 148 EKKIDRVFLTPVDEASPSREVLEAIE--KADNIVIGPGSLYTSILPNISV---------PGIRE-ALKKTXAKKVYVSNI 215 (309)
T ss_pred CCCceEEEEcCCCCCCCCHHHHHHHH--hCCEEEECCCcCHHHhhhhcCc---------HhHHH-HHHhcCCCeEEECCC
Confidence 345665666652 23446777777 579999997653 33334444 44544 556689999999776
Q ss_pred C
Q 026225 221 S 221 (241)
Q Consensus 221 ~ 221 (241)
-
T Consensus 216 ~ 216 (309)
T cd07044 216 X 216 (309)
T ss_pred C
Confidence 4
No 151
>PRK14561 hypothetical protein; Provisional
Probab=32.48 E-value=2.8e+02 Score=22.64 Aligned_cols=85 Identities=11% Similarity=0.016 Sum_probs=48.7
Q ss_pred EEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEEE
Q 026225 73 KIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEVA 152 (241)
Q Consensus 73 ~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~ 152 (241)
+|+|++.+..+|.-++.++..+ .++.++++..... . -.+.++..++.. |++....
T Consensus 2 kV~ValSGG~DSslll~~l~~~-----~~v~a~t~~~g~~--------------~----e~~~a~~~a~~l--Gi~~~~v 56 (194)
T PRK14561 2 KAGVLFSGGKDSSLAAILLERF-----YDVELVTVNFGVL--------------D----SWKHAREAAKAL--GFPHRVL 56 (194)
T ss_pred EEEEEEechHHHHHHHHHHHhc-----CCeEEEEEecCch--------------h----HHHHHHHHHHHh--CCCEEEE
Confidence 6999999998888776655432 3466777654311 0 023344445543 5655544
Q ss_pred EEcCC--------------------CchHHHHHHHHHcCCcEEEEccCCCC
Q 026225 153 VVEGK--------------------EKGPAIVEEARKQGVALLVLGQKKRS 183 (241)
Q Consensus 153 ~~~G~--------------------~~~~~I~~~a~~~~~dllVmG~~~~~ 183 (241)
-.... .....++..+. ++++.|+.|.+..-
T Consensus 57 ~~~~~~~~~~~~~~~~~~~P~~~~~~l~~~~l~~~a-~g~~~Ia~G~n~DD 106 (194)
T PRK14561 57 ELDREILEKAVDMIIEDGYPNNAIQYVHEHALEALA-EEYDVIADGTRRDD 106 (194)
T ss_pred ECCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHH-cCCCEEEEEecCCC
Confidence 33211 11113444444 89999999998764
No 152
>PF13662 Toprim_4: Toprim domain; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A.
Probab=32.43 E-value=78 Score=21.69 Aligned_cols=33 Identities=15% Similarity=0.159 Sum_probs=21.7
Q ss_pred CCEEEEeecCCHHHHHHHHHHHHhhccCCCEEE
Q 026225 71 GRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVV 103 (241)
Q Consensus 71 ~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~ 103 (241)
.++|++++|.+...+.+.....+.+...+-++.
T Consensus 46 ~~~Vii~~D~D~~G~~~a~~i~~~l~~~gi~v~ 78 (81)
T PF13662_consen 46 VKEVIIAFDNDKAGEKAAQKIAKKLLPLGIRVT 78 (81)
T ss_dssp -SEEEEEEESSHHHHHHHHHHHHHHG-------
T ss_pred CceEEEEeCcCHHHHHHHHHHHHHHHhhccccc
Confidence 589999999999888888888776655554443
No 153
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=32.41 E-value=3.8e+02 Score=24.22 Aligned_cols=33 Identities=12% Similarity=0.144 Sum_probs=25.8
Q ss_pred CEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEE
Q 026225 72 RKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVI 108 (241)
Q Consensus 72 ~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~ 108 (241)
++|+|++.+.-+|.-++..+.+ .+.+|..+|+.
T Consensus 1 ~kVlValSGGvDSsv~a~lL~~----~G~~V~~v~~~ 33 (352)
T TIGR00420 1 KKVIVGLSGGVDSSVSAYLLKQ----QGYEVVGVFMK 33 (352)
T ss_pred CeEEEEEeCCHHHHHHHHHHHH----cCCeEEEEEEE
Confidence 4799999999888877766655 35688888884
No 154
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=31.94 E-value=1.4e+02 Score=27.70 Aligned_cols=45 Identities=7% Similarity=-0.075 Sum_probs=30.5
Q ss_pred HHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeCCC
Q 026225 162 AIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRKS 221 (241)
Q Consensus 162 ~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~~ 221 (241)
.+.+.++..++|.||+-...-+.-. ..-..++..++|||++....
T Consensus 54 ~~~~~~~~~~~d~ii~~~~tf~~~~---------------~~~~~~~~~~~Pvll~a~~~ 98 (452)
T cd00578 54 KAAEEFNEANCDGLIVWMHTFGPAK---------------MWIAGLSELRKPVLLLATQF 98 (452)
T ss_pred HHHHHHhhcCCcEEEEcccccccHH---------------HHHHHHHhcCCCEEEEeCCC
Confidence 5567777789999998765543322 22334567899999997654
No 155
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=31.82 E-value=3.5e+02 Score=23.68 Aligned_cols=126 Identities=14% Similarity=0.128 Sum_probs=70.3
Q ss_pred CCCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccE
Q 026225 70 SGRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQF 149 (241)
Q Consensus 70 ~~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v 149 (241)
...||.|.+.++.....+|-.+...- ..+.+|.+|-...+. +. ..+++. |+++
T Consensus 88 ~~~ri~vl~Sg~g~nl~al~~~~~~~-~~~~~i~~visn~~~-----------------~~-------~lA~~~--gIp~ 140 (286)
T PRK13011 88 ARPKVLIMVSKFDHCLNDLLYRWRIG-ELPMDIVGVVSNHPD-----------------LE-------PLAAWH--GIPF 140 (286)
T ss_pred cCceEEEEEcCCcccHHHHHHHHHcC-CCCcEEEEEEECCcc-----------------HH-------HHHHHh--CCCE
Confidence 34689999988777777777765432 345676666553321 11 112322 6776
Q ss_pred EEEEEcC---CCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCC---------CCCCC-CHHHHHHhc----CCc
Q 026225 150 EVAVVEG---KEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGN---------RVPGG-SFVEYCIQN----ADC 212 (241)
Q Consensus 150 ~~~~~~G---~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~---------~~~~G-sv~~~vi~~----a~~ 212 (241)
....... .+.+..+.+..+++++|++|+..-.+---..++-.|..+ -.++| ......+.+ +.|
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~l~~~~~Dlivlagy~~il~~~~l~~~~~~iiNiHpSLLP~~rG~~~~~~ai~~G~~~tG~ 220 (286)
T PRK13011 141 HHFPITPDTKPQQEAQVLDVVEESGAELVVLARYMQVLSPELCRKLAGRAINIHHSFLPGFKGAKPYHQAYERGVKLIGA 220 (286)
T ss_pred EEeCCCcCchhhhHHHHHHHHHHhCcCEEEEeChhhhCCHHHHhhccCCeEEeccccCCCCCCCcHHHHHHHCCCCeEEE
Confidence 5432111 112346888899999999999876654444444444331 11123 334444444 457
Q ss_pred eEEEEeCCCc
Q 026225 213 MAVAVRRKSK 222 (241)
Q Consensus 213 pVlvV~~~~~ 222 (241)
.|..|-..-.
T Consensus 221 TvH~v~~~~D 230 (286)
T PRK13011 221 TAHYVTDDLD 230 (286)
T ss_pred EEEEEcCCCc
Confidence 7777755433
No 156
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=31.79 E-value=2e+02 Score=20.80 Aligned_cols=48 Identities=8% Similarity=0.122 Sum_probs=30.3
Q ss_pred HHHHHHhhCCCccEEEEEEcCCCchHHHHHHHHHcCCcEEEEccCCCCchhh
Q 026225 136 LKNMCQQKRPEVQFEVAVVEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWR 187 (241)
Q Consensus 136 ~~~~~~~~~~~v~v~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~ 187 (241)
+...+++. |.++. +.......+.+.+.+.+.++|+|.++..-......
T Consensus 20 la~~l~~~--G~~v~--~~d~~~~~~~l~~~~~~~~pd~V~iS~~~~~~~~~ 67 (121)
T PF02310_consen 20 LAAYLRKA--GHEVD--ILDANVPPEELVEALRAERPDVVGISVSMTPNLPE 67 (121)
T ss_dssp HHHHHHHT--TBEEE--EEESSB-HHHHHHHHHHTTCSEEEEEESSSTHHHH
T ss_pred HHHHHHHC--CCeEE--EECCCCCHHHHHHHHhcCCCcEEEEEccCcCcHHH
Confidence 44444442 56554 44544434689999999999999998744334433
No 157
>COG0615 TagD Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism]
Probab=31.71 E-value=88 Score=24.56 Aligned_cols=34 Identities=21% Similarity=0.394 Sum_probs=27.6
Q ss_pred ccEEEEEEcCCCchHHH-HHHHHHcCCcEEEEccCCC
Q 026225 147 VQFEVAVVEGKEKGPAI-VEEARKQGVALLVLGQKKR 182 (241)
Q Consensus 147 v~v~~~~~~G~~~~~~I-~~~a~~~~~dllVmG~~~~ 182 (241)
++..-.++.|.+.. + .+.++++++|.+++|.-..
T Consensus 63 ~ryVD~vi~~~p~~--~~~~~i~~~k~Div~lG~D~~ 97 (140)
T COG0615 63 LRYVDEVILGAPWD--IKFEDIEEYKPDIVVLGDDQK 97 (140)
T ss_pred CcchheeeeCCccc--cChHHHHHhCCCEEEECCCCc
Confidence 55666778888764 6 8899999999999998765
No 158
>PRK09213 pur operon repressor; Provisional
Probab=31.64 E-value=2.9e+02 Score=24.14 Aligned_cols=81 Identities=19% Similarity=0.183 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHHHHHhh---CCCccEEEEEEcCCC--c---hHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCC
Q 026225 126 APRGYEFVHSLKNMCQQK---RPEVQFEVAVVEGKE--K---GPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRV 197 (241)
Q Consensus 126 ~~~~~~~l~~~~~~~~~~---~~~v~v~~~~~~G~~--~---~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~ 197 (241)
.+++++.++.+.+.+.+. .||-=+...-+-++| . ++.+.+.....++|. |+|...++..
T Consensus 77 ~~~a~~~~~~L~~~L~~~~rilpGgf~y~sdll~~P~~l~~i~~~la~~~~~~~iD~-Vvtvet~GIp------------ 143 (271)
T PRK09213 77 EEEAREFVEELCERLSEPDRILPGGYLYLSDLLGNPSILRKIGRIIASAFADKKIDA-VMTVETKGIP------------ 143 (271)
T ss_pred HHHHHHHHHHHHHHHHhCCccCCCCeEEeCcccCCHHHHHHHHHHHHHHhcccCCCE-EEEEccccHH------------
Confidence 445666777766665543 122112222222333 1 122222333446785 5565544322
Q ss_pred CCCCHHHHHHhcCCceEEEEeCCCcC
Q 026225 198 PGGSFVEYCIQNADCMAVAVRRKSKK 223 (241)
Q Consensus 198 ~~Gsv~~~vi~~a~~pVlvV~~~~~~ 223 (241)
.+..+......|++++|+..+-
T Consensus 144 ----lA~~vA~~L~vp~vivRK~~K~ 165 (271)
T PRK09213 144 ----LAYAVANYLNVPFVIVRRDSKV 165 (271)
T ss_pred ----HHHHHHHHHCCCEEEEEECCCC
Confidence 4455566679999999987764
No 159
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=31.59 E-value=1.5e+02 Score=25.64 Aligned_cols=49 Identities=20% Similarity=0.218 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhhCCCccEEEEEE--cCCCchHHHHHHHHHcCCcEEEEcc
Q 026225 131 EFVHSLKNMCQQKRPEVQFEVAVV--EGKEKGPAIVEEARKQGVALLVLGQ 179 (241)
Q Consensus 131 ~~l~~~~~~~~~~~~~v~v~~~~~--~G~~~~~~I~~~a~~~~~dllVmG~ 179 (241)
+.++++.+.+....|++++....- ....-+++|++.+...++|+|.+|-
T Consensus 119 ~V~~~a~~~l~~~~p~l~ivg~h~GYf~~~e~~~i~~~I~~s~pdil~Vgm 169 (253)
T COG1922 119 GVAEQAAAKLRAKYPGLKIVGSHDGYFDPEEEEAIVERIAASGPDILLVGM 169 (253)
T ss_pred HHHHHHHHHHHHHCCCceEEEecCCCCChhhHHHHHHHHHhcCCCEEEEeC
Confidence 345555555555556676654431 1122224899999999999999984
No 160
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=31.38 E-value=76 Score=23.94 Aligned_cols=113 Identities=15% Similarity=0.065 Sum_probs=62.8
Q ss_pred CEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEE
Q 026225 72 RKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEV 151 (241)
Q Consensus 72 ~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~ 151 (241)
+||++++-++..+..+.++...+... +.+|.++-- +.+.+.+.... .. +-++..
T Consensus 1 k~i~l~vtGs~~~~~~~~~l~~L~~~-g~~v~vv~S-------------------~~A~~~~~~~~-~~-----~~~v~~ 54 (129)
T PF02441_consen 1 KRILLGVTGSIAAYKAPDLLRRLKRA-GWEVRVVLS-------------------PSAERFVTPEG-LT-----GEPVYT 54 (129)
T ss_dssp -EEEEEE-SSGGGGGHHHHHHHHHTT-TSEEEEEES-------------------HHHHHHSHHHG-HC-----CSCEEC
T ss_pred CEEEEEEECHHHHHHHHHHHHHHhhC-CCEEEEEEC-------------------CcHHHHhhhhc-cc-----cchhhh
Confidence 58999999998888888887666644 667544422 23333333222 11 122221
Q ss_pred E---EEcCCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcC---CceEEEEeCC
Q 026225 152 A---VVEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNA---DCMAVAVRRK 220 (241)
Q Consensus 152 ~---~~~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a---~~pVlvV~~~ 220 (241)
. ...+... .-++..+ .+|++|+..-....+.++-. +- -.+....++..+ ..||++++.-
T Consensus 55 ~~~~~~~~~~~--~~~~~~~--~~D~~vVaPaT~NtlaKiA~----Gi--aD~l~~~~~~~~l~~~~pvvi~P~m 119 (129)
T PF02441_consen 55 DWDTWDRGDPA--EHIELSR--WADAMVVAPATANTLAKIAN----GI--ADNLLTRVALAALKEGKPVVIAPAM 119 (129)
T ss_dssp THCTCSTTTTT--CHHHHHH--TESEEEEEEEEHHHHHHHHT----T----SSHHHHHHHHHHHTTCGEEEEEEE
T ss_pred ccccCCCCCCc--Ccccccc--cCCEEEEcccCHHHHHHHHh----CC--cchHHHHHHHHHccCCCCeEEEEeC
Confidence 1 1223332 2344433 58999998755545555443 10 035666667777 9999999864
No 161
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=30.80 E-value=1.3e+02 Score=22.06 Aligned_cols=65 Identities=17% Similarity=0.151 Sum_probs=38.2
Q ss_pred HHHHHHHHHhhCCCccEEEEEEcCCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCc
Q 026225 133 VHSLKNMCQQKRPEVQFEVAVVEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADC 212 (241)
Q Consensus 133 l~~~~~~~~~~~~~v~v~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~ 212 (241)
.+++++.++++ |+++++. ... .. .+.+.+. ++|+|++|..-+-.+. -....+....+
T Consensus 17 a~km~~~a~~~--gi~~~i~--a~~-~~-e~~~~~~--~~Dvill~PQv~~~~~---------------~i~~~~~~~~i 73 (99)
T cd05565 17 ANALNKGAKER--GVPLEAA--AGA-YG-SHYDMIP--DYDLVILAPQMASYYD---------------ELKKDTDRLGI 73 (99)
T ss_pred HHHHHHHHHHC--CCcEEEE--Eee-HH-HHHHhcc--CCCEEEEcChHHHHHH---------------HHHHHhhhcCC
Confidence 34455666654 7776633 222 22 4555544 6899999876543332 33445556678
Q ss_pred eEEEEeCC
Q 026225 213 MAVAVRRK 220 (241)
Q Consensus 213 pVlvV~~~ 220 (241)
||.+++..
T Consensus 74 pv~~I~~~ 81 (99)
T cd05565 74 KLVTTTGK 81 (99)
T ss_pred CEEEeCHH
Confidence 99888644
No 162
>KOG2594 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.77 E-value=4.3e+02 Score=24.29 Aligned_cols=27 Identities=15% Similarity=0.340 Sum_probs=21.6
Q ss_pred ccCCCCCEEEEeecCCHHHHHHHHHHH
Q 026225 66 KLVSSGRKIMIVVDSSNEAKGALQWSL 92 (241)
Q Consensus 66 ~~~~~~~~ILVavD~s~~s~~al~~A~ 92 (241)
+.+...+++|+++|++..+.-.|+.+-
T Consensus 57 ~~~~~sk~vLlv~~G~ssSlvlLd~vh 83 (396)
T KOG2594|consen 57 KMGTPSKNVLLVFDGGSSSLVLLDFVH 83 (396)
T ss_pred hcCCcccceEEEecCCcchHhHHHHHH
Confidence 346678999999999988887777664
No 163
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=30.58 E-value=2.9e+02 Score=26.48 Aligned_cols=120 Identities=13% Similarity=0.091 Sum_probs=70.1
Q ss_pred CEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEE
Q 026225 72 RKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEV 151 (241)
Q Consensus 72 ~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~ 151 (241)
..+++.++.|.--...|..|.+ .+..+.++-|-..+. -+.+.++..+.+ .|+++.+
T Consensus 360 gdviltyg~s~vV~~ill~A~~----~~k~frVvVVDSRP~--------------~EG~~~lr~Lv~------~GinctY 415 (556)
T KOG1467|consen 360 GDVLLTYGSSSVVNMILLEAKE----LGKKFRVVVVDSRPN--------------LEGRKLLRRLVD------RGINCTY 415 (556)
T ss_pred CCEEEEecchHHHHHHHHHHHH----hCcceEEEEEeCCCC--------------cchHHHHHHHHH------cCCCeEE
Confidence 3478888887766666666544 445555555533222 244455444433 2899999
Q ss_pred EEEcCCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCC-CHHHHHHhcCCceEEEEeCCCcCCCCeEEe
Q 026225 152 AVVEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGG-SFVEYCIQNADCMAVAVRRKSKKLGGYLIT 230 (241)
Q Consensus 152 ~~~~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~G-sv~~~vi~~a~~pVlvV~~~~~~~~~~li~ 230 (241)
.++.+-. -|. ..++-|++|.+.--. .+.++ .-.| +-..-|.++..+||||+=..-|...++.++
T Consensus 416 v~I~a~s---yim-----~evtkvfLGahails-NG~vy------sR~GTa~valvAna~nVPVlVCCE~yKF~eRvQlD 480 (556)
T KOG1467|consen 416 VLINAAS---YIM-----LEVTKVFLGAHAILS-NGAVY------SRVGTACVALVANAFNVPVLVCCEAYKFHERVQLD 480 (556)
T ss_pred EEehhHH---HHH-----Hhcceeeechhhhhc-Ccchh------hhcchHHHHHHhcccCCCEEEEechhhhhhhhhhh
Confidence 9887753 222 357899999876310 11111 0014 333345566689999997777766655554
No 164
>PLN02285 methionyl-tRNA formyltransferase
Probab=30.55 E-value=2.4e+02 Score=25.26 Aligned_cols=44 Identities=7% Similarity=0.033 Sum_probs=26.6
Q ss_pred CccEEEEEEcCCCchHHHHHHHHHcCCcEEEEccCCCCchhhHh
Q 026225 146 EVQFEVAVVEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLF 189 (241)
Q Consensus 146 ~v~v~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l 189 (241)
|++...++.......+.+++..++.++|++|+..-++---..++
T Consensus 68 gIp~~~v~~~~~~~~~~~~~~l~~~~~Dliv~~~~~~ilp~~~l 111 (334)
T PLN02285 68 GFPPDLIFTPEKAGEEDFLSALRELQPDLCITAAYGNILPQKFL 111 (334)
T ss_pred CCCcceecCccccCCHHHHHHHHhhCCCEEEhhHhhhhcCHHHH
Confidence 56643222222333346788888999999999876653333343
No 165
>PRK00766 hypothetical protein; Provisional
Probab=30.51 E-value=80 Score=26.19 Aligned_cols=59 Identities=15% Similarity=0.111 Sum_probs=37.5
Q ss_pred CccEEEEEEcCCCchHHHHHHHHH----cCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEE
Q 026225 146 EVQFEVAVVEGKEKGPAIVEEARK----QGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAV 217 (241)
Q Consensus 146 ~v~v~~~~~~G~~~~~~I~~~a~~----~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV 217 (241)
|+-.....+.|.+..+.|++.++. .++.+|.+..-..+++.=. -.+.+-+.+..||++|
T Consensus 42 Gv~~~~itvdG~DaT~~i~~mv~~~~~r~~i~~V~L~Git~agFNvv-------------D~~~l~~~tg~PVI~V 104 (194)
T PRK00766 42 GVLSRWITVDGLDATEAIIEMVNSSRHKGQLRVIMLDGITYGGFNVV-------------DIEELYRETGLPVIVV 104 (194)
T ss_pred eEEEEEEEECCccHHHHHHHHHHhcccccceEEEEECCEeeeeeEEe-------------cHHHHHHHHCCCEEEE
Confidence 455667777788777788888765 3455666654444443221 2356667778888888
No 166
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=30.43 E-value=1.1e+02 Score=25.33 Aligned_cols=49 Identities=22% Similarity=0.470 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHhhCCCccEEEEEEcCCCchHHHHHHHHHcCCcEEEEcc
Q 026225 127 PRGYEFVHSLKNMCQQKRPEVQFEVAVVEGKEKGPAIVEEARKQGVALLVLGQ 179 (241)
Q Consensus 127 ~~~~~~l~~~~~~~~~~~~~v~v~~~~~~G~~~~~~I~~~a~~~~~dllVmG~ 179 (241)
+...+.+.++++...++ +..+++. ++|.-..+.+ ..+.+.++|.+|+|+
T Consensus 147 ~~~~~KI~~l~~~~~~~--~~~~~I~-vDGGI~~~~~-~~~~~aGad~~V~Gs 195 (201)
T PF00834_consen 147 PEVLEKIRELRKLIPEN--GLDFEIE-VDGGINEENI-KQLVEAGADIFVAGS 195 (201)
T ss_dssp GGHHHHHHHHHHHHHHH--TCGSEEE-EESSESTTTH-HHHHHHT--EEEESH
T ss_pred HHHHHHHHHHHHHHHhc--CCceEEE-EECCCCHHHH-HHHHHcCCCEEEECH
Confidence 34445566677776665 4445544 4455344244 444566999999995
No 167
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=29.99 E-value=1.8e+02 Score=25.59 Aligned_cols=55 Identities=15% Similarity=0.250 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHhhCCCccEEEEEEcCCCchHHHHHHHHHcCCcEEEEccCCCCch
Q 026225 128 RGYEFVHSLKNMCQQKRPEVQFEVAVVEGKEKGPAIVEEARKQGVALLVLGQKKRSTT 185 (241)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~~v~v~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~ 185 (241)
.+.+.+.++...++.. +..+.....+.......+++.+...++|.||.+. +.+.+
T Consensus 17 ~~~~~~~~~~~~l~~~--g~~~~~~~t~~~g~a~~~a~~a~~~~~D~via~G-GDGTv 71 (301)
T COG1597 17 KAKKLLREVEELLEEA--GHELSVRVTEEAGDAIEIAREAAVEGYDTVIAAG-GDGTV 71 (301)
T ss_pred chhhHHHHHHHHHHhc--CCeEEEEEeecCccHHHHHHHHHhcCCCEEEEec-CcchH
Confidence 4455556666666654 7777777777663344788888888999998863 33444
No 168
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=29.93 E-value=94 Score=29.02 Aligned_cols=79 Identities=14% Similarity=0.196 Sum_probs=52.9
Q ss_pred CccEEEEEEcCCC--------chHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEE
Q 026225 146 EVQFEVAVVEGKE--------KGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAV 217 (241)
Q Consensus 146 ~v~v~~~~~~G~~--------~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV 217 (241)
+.++.--++.|+. ..+.|++.+++.++|++|-|.-=.-..=+..- |.++..|-.+..+|++.-
T Consensus 43 ~~eVvaTiiCGDnYf~en~eea~~~i~~mv~k~~pDv~iaGPaFNagrYG~ac---------g~va~aV~e~~~IP~vta 113 (431)
T TIGR01917 43 DAEIVATVVCGDSFFGENLEEAKAKVLEMIKGANPDIFIAGPAFNAGRYGMAA---------GAITKAVQDELGIKAFTA 113 (431)
T ss_pred CCEEEEEEEECchhhhhCHHHHHHHHHHHHHhcCCCEEEEcCccCCccHHHHH---------HHHHHHHHHhhCCCeEEE
Confidence 4556555666532 22468999999999999999653322222333 788888889999999986
Q ss_pred eCCC------cCCCCeEEeccc
Q 026225 218 RRKS------KKLGGYLITTKR 233 (241)
Q Consensus 218 ~~~~------~~~~~~li~t~~ 233 (241)
=... .|.+-|+|.|..
T Consensus 114 My~ENpgvd~yk~~vyIv~t~~ 135 (431)
T TIGR01917 114 MYEENPGADMFKKEVYVIPTAD 135 (431)
T ss_pred ecccChHHHHHhhCcEEEECCC
Confidence 4222 355677777753
No 169
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=29.87 E-value=1e+02 Score=28.80 Aligned_cols=47 Identities=19% Similarity=0.150 Sum_probs=32.4
Q ss_pred chHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEE
Q 026225 159 KGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAV 217 (241)
Q Consensus 159 ~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV 217 (241)
.+++|.+..++.++|.+||-+.-..-.+. |++..+-|.++.+||+.+
T Consensus 324 ~g~eIa~~Lk~dgVDAvILtstCgtCtrc------------ga~m~keiE~~GIPvV~i 370 (431)
T TIGR01917 324 FAKEFSKELLAAGVDAVILTSTUGTCTRC------------GATMVKEIERAGIPVVHI 370 (431)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCcchhH------------HHHHHHHHHHcCCCEEEE
Confidence 34567777777788888887664444444 666777777788887766
No 170
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=29.75 E-value=95 Score=28.99 Aligned_cols=78 Identities=14% Similarity=0.177 Sum_probs=52.4
Q ss_pred CccEEEEEEcCCC--------chHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEE
Q 026225 146 EVQFEVAVVEGKE--------KGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAV 217 (241)
Q Consensus 146 ~v~v~~~~~~G~~--------~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV 217 (241)
+.++.--++.|+. ..+.|++.+++.++|++|-|.-=.-+.=+..- |.++..|-.+..+|++.-
T Consensus 43 ~~eVvaTiiCGDnYf~en~eea~~~i~~mv~k~~pDv~iaGPaFNagrYG~ac---------g~va~aV~e~~~IP~vt~ 113 (431)
T TIGR01918 43 DAEVVHTVVCGDSFFGENLEEAVARVLEMLKDKEPDIFIAGPAFNAGRYGVAC---------GEICKVVQDKLNVPAVTS 113 (431)
T ss_pred CCEEEEEEEECchhhhhCHHHHHHHHHHHHHhcCCCEEEEcCccCCccHHHHH---------HHHHHHHHHhhCCCeEEE
Confidence 4566655666542 22468999999999999999653322222333 788888889999999986
Q ss_pred eCCC------cCCCCeEEecc
Q 026225 218 RRKS------KKLGGYLITTK 232 (241)
Q Consensus 218 ~~~~------~~~~~~li~t~ 232 (241)
=... .|.+-|++.|.
T Consensus 114 My~ENpgvd~yk~~vyIv~t~ 134 (431)
T TIGR01918 114 MYVENPGVDMFKKDVYVMITG 134 (431)
T ss_pred ecccChHHHHHhhCcEEEECC
Confidence 4222 35566777774
No 171
>TIGR00364 exsB protein. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.
Probab=29.75 E-value=3e+02 Score=22.24 Aligned_cols=33 Identities=9% Similarity=0.073 Sum_probs=22.8
Q ss_pred EEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcC
Q 026225 74 IMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKP 110 (241)
Q Consensus 74 ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~ 110 (241)
++|++.+.-+|.-++.++.+ .+.+|..+|+...
T Consensus 1 ~vv~lSGG~DSs~~~~~~~~----~g~~v~~~~~~~~ 33 (201)
T TIGR00364 1 AVVVLSGGQDSTTCLAIAKD----EGYEVHAITFDYG 33 (201)
T ss_pred CEEEeccHHHHHHHHHHHHH----cCCcEEEEEEECC
Confidence 36788888888767666544 2567888888643
No 172
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=29.73 E-value=1.5e+02 Score=23.28 Aligned_cols=53 Identities=13% Similarity=0.079 Sum_probs=36.7
Q ss_pred chHHHHHHHHHcCCcEEEEccCC----CCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeCC
Q 026225 159 KGPAIVEEARKQGVALLVLGQKK----RSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRK 220 (241)
Q Consensus 159 ~~~~I~~~a~~~~~dllVmG~~~----~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~ 220 (241)
..+.|.+.+++++++.||+|--. ......-.. -.+++.+-.+.+.||..+-.+
T Consensus 41 ~~~~l~~li~~~~~~~vVVGlP~~m~g~~~~~~~~~---------~~f~~~L~~r~~lpv~l~DER 97 (141)
T COG0816 41 DFNALLKLVKEYQVDTVVVGLPLNMDGTEGPRAELA---------RKFAERLKKRFNLPVVLWDER 97 (141)
T ss_pred hHHHHHHHHHHhCCCEEEEecCcCCCCCcchhHHHH---------HHHHHHHHHhcCCCEEEEcCc
Confidence 34589999999999999999533 111122111 346777888888999998655
No 173
>PF02610 Arabinose_Isome: L-arabinose isomerase; InterPro: IPR003762 The Escherichia coli araBAD operon consists of three genes encoding three enzymes that convert L-arabinose to D-xylulose-5 phosphate. L-arabinose isomerase (AraA) 5.3.1.4 from EC catalyses the conversion of L-arabinose to L-ribulose as the first step in the pathway of L-arabinose utilization as a carbon source [].; GO: 0008733 L-arabinose isomerase activity, 0008152 metabolic process; PDB: 4F2D_A 2AJT_C 2HXG_C.
Probab=29.28 E-value=2.8e+02 Score=25.40 Aligned_cols=86 Identities=19% Similarity=0.096 Sum_probs=44.4
Q ss_pred CCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEEEEEcCCCchHHHH---HHHH-HcCCcEEEEccCCCCchhhHhhh
Q 026225 116 ATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEVAVVEGKEKGPAIV---EEAR-KQGVALLVLGQKKRSTTWRLFMM 191 (241)
Q Consensus 116 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~~~~G~~~~~~I~---~~a~-~~~~dllVmG~~~~~~~~~~l~~ 191 (241)
.++++..++..+++++..+.+.+.... .+++...-+-..+ +.|. ..|+ ..+++.||.=-+..++.+.++-
T Consensus 18 LYg~e~L~~v~~~s~~i~~~l~~~~~~---p~~vv~k~~~~t~--~~i~~~~~~an~~~~c~gvi~wMhTfSpakmwI~- 91 (359)
T PF02610_consen 18 LYGEETLKQVAEHSREIVDGLNASGSL---PVKVVFKPVVTTP--EEITRVCKEANADEDCDGVITWMHTFSPAKMWIP- 91 (359)
T ss_dssp TS-HHHHHHHHHHHHHHHHHHHHHS-----SSEEEE---B-SH--HHHHHHHHHHHH-TTEEEEEEEESS---THHHHH-
T ss_pred ccCHHHHHHHHHHHHHHHHHHhhcCCC---ceEEEecCccCCH--HHHHHHHHHhhccCCccEEeehhhhhccHHHHHH-
Confidence 456666777777777776666554321 2444444333332 2444 4443 3578888887777777666553
Q ss_pred hcCCCCCCCCHHHHHHhcCCceEEEEeCCC
Q 026225 192 WAGNRVPGGSFVEYCIQNADCMAVAVRRKS 221 (241)
Q Consensus 192 ~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~~ 221 (241)
.++...+|+|.+.-..
T Consensus 92 --------------gl~~l~kPllhl~tQ~ 107 (359)
T PF02610_consen 92 --------------GLQRLQKPLLHLHTQP 107 (359)
T ss_dssp --------------HHHH--S-EEEEE--S
T ss_pred --------------HHHHhCCCeEEeeccc
Confidence 6788999999997553
No 174
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=29.14 E-value=3.5e+02 Score=23.64 Aligned_cols=81 Identities=17% Similarity=0.172 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHHHHHHhh---CCCccEEEEEEcCCC-c----hHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCC
Q 026225 126 APRGYEFVHSLKNMCQQK---RPEVQFEVAVVEGKE-K----GPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRV 197 (241)
Q Consensus 126 ~~~~~~~l~~~~~~~~~~---~~~v~v~~~~~~G~~-~----~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~ 197 (241)
.+++++.++.+.+.+.+. .||--+...-+-++| . ++.+.+.....++|. |+|...++..
T Consensus 75 ~~~~~~~~~~l~~~l~~~~rilpgg~~~~s~ll~~P~~l~~ig~~la~~~~~~~iD~-VvgvetkGIp------------ 141 (268)
T TIGR01743 75 QAEAEEFVEELCQSLSEPERILPGGYLYLTDILGKPSILSKIGKILASVFAEREIDA-VMTVATKGIP------------ 141 (268)
T ss_pred HHHHHHHHHHHHHHHHHCCCcccCCeEEechhhcCHHHHHHHHHHHHHHhcCCCCCE-EEEEccchHH------------
Confidence 345666667666666643 222222222222443 1 112222233347885 5565544322
Q ss_pred CCCCHHHHHHhcCCceEEEEeCCCcC
Q 026225 198 PGGSFVEYCIQNADCMAVAVRRKSKK 223 (241)
Q Consensus 198 ~~Gsv~~~vi~~a~~pVlvV~~~~~~ 223 (241)
.+..+.....+|++++|+..+-
T Consensus 142 ----LA~avA~~L~vp~vivRK~~K~ 163 (268)
T TIGR01743 142 ----LAYAVASVLNVPLVIVRKDSKV 163 (268)
T ss_pred ----HHHHHHHHHCCCEEEEEECCCC
Confidence 4455666778999999988764
No 175
>cd01029 TOPRIM_primases TOPRIM_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of bacterial DnaG-type primases and their homologs. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. The prototypical bacterial primase. Escherichia coli DnaG is a single subunit enzyme.
Probab=28.96 E-value=1.7e+02 Score=19.52 Aligned_cols=34 Identities=18% Similarity=0.288 Sum_probs=24.6
Q ss_pred CCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEE
Q 026225 71 GRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVL 104 (241)
Q Consensus 71 ~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~L 104 (241)
.++|.++.|.+...+.+...+.+.+...+..+.+
T Consensus 43 ~~~vii~~D~D~~G~~~~~~~~~~~~~~~~~~~i 76 (79)
T cd01029 43 ARTVILAFDNDEAGKKAAARALELLLALGGRVRV 76 (79)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 4899999999888777777776666555444433
No 176
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=28.95 E-value=3.3e+02 Score=22.48 Aligned_cols=69 Identities=6% Similarity=-0.000 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhhCCCccEEEEEEcCCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCC
Q 026225 132 FVHSLKNMCQQKRPEVQFEVAVVEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNAD 211 (241)
Q Consensus 132 ~l~~~~~~~~~~~~~v~v~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~ 211 (241)
+++.+.+.+++. |.++.+...... ..+.+.+.+...++|-||+-..... .. . -+-+....
T Consensus 28 ~~~gi~~~~~~~--g~~~~v~~~~~~-~~~~~~~~l~~~~~dgiii~~~~~~--~~--------------~-~~~~~~~~ 87 (275)
T cd06295 28 LLGGIADALAER--GYDLLLSFVSSP-DRDWLARYLASGRADGVILIGQHDQ--DP--------------L-PERLAETG 87 (275)
T ss_pred HHHHHHHHHHHc--CCEEEEEeCCch-hHHHHHHHHHhCCCCEEEEeCCCCC--hH--------------H-HHHHHhCC
Confidence 444455555543 666665544433 3446777777788997766322111 01 1 12345678
Q ss_pred ceEEEEeCC
Q 026225 212 CMAVAVRRK 220 (241)
Q Consensus 212 ~pVlvV~~~ 220 (241)
+||+++-..
T Consensus 88 ipvV~~~~~ 96 (275)
T cd06295 88 LPFVVWGRP 96 (275)
T ss_pred CCEEEECCc
Confidence 899888554
No 177
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=28.94 E-value=3.5e+02 Score=22.68 Aligned_cols=46 Identities=15% Similarity=0.303 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhhCCCccEEEEEEcCCCchHHHHHHHHHcCCcEEEEccC
Q 026225 131 EFVHSLKNMCQQKRPEVQFEVAVVEGKEKGPAIVEEARKQGVALLVLGQK 180 (241)
Q Consensus 131 ~~l~~~~~~~~~~~~~v~v~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~ 180 (241)
+.+.++++...+. +..+.+.+.-|-. .+.|. .+.+.++|.+|+|+-
T Consensus 152 ekI~~l~~~~~~~--~~~~~I~vdGGI~-~eni~-~l~~aGAd~vVvGSa 197 (220)
T PRK08883 152 DKLRAVRKMIDES--GRDIRLEIDGGVK-VDNIR-EIAEAGADMFVAGSA 197 (220)
T ss_pred HHHHHHHHHHHhc--CCCeeEEEECCCC-HHHHH-HHHHcCCCEEEEeHH
Confidence 3455555555543 4455555544444 43555 445679999999953
No 178
>PRK05370 argininosuccinate synthase; Validated
Probab=28.90 E-value=5e+02 Score=24.51 Aligned_cols=109 Identities=12% Similarity=0.098 Sum_probs=61.3
Q ss_pred CCCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhh----------hHHHHHHHHHHHHH
Q 026225 70 SGRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQR----------APRGYEFVHSLKNM 139 (241)
Q Consensus 70 ~~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~ 139 (241)
.+++|++|+.+.-++.-++.|..+. +.+|+.+++.-...... +.+...+.. ..-.++..+.+...
T Consensus 10 ~~~KVvLAYSGGLDTSv~l~wL~e~----~~eVia~~aDvGQ~~~e-d~~~i~~kA~~~GA~~~~viDlr~eF~e~~i~a 84 (447)
T PRK05370 10 VGQRVGIAFSGGLDTSAALLWMRQK----GAVPYAYTANLGQPDED-DYDAIPRRAMEYGAENARLIDCRAQLVAEGIAA 84 (447)
T ss_pred CCCEEEEEecCCchHHHHHHHHHhc----CCeEEEEEEECCCCCcc-chHHHHHHHHHhCCCEEEEeccHHHHHHHHHHH
Confidence 4679999999998888899997664 77898888865321000 000000000 01111222222222
Q ss_pred HHhhCCCccE----EEEEE-----cCCCchHHHHHHHHHcCCcEEEEccCCCCchh
Q 026225 140 CQQKRPEVQF----EVAVV-----EGKEKGPAIVEEARKQGVALLVLGQKKRSTTW 186 (241)
Q Consensus 140 ~~~~~~~v~v----~~~~~-----~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~ 186 (241)
++. +.-. +-... .-.-.++.|++.|++.+++.|.=|+.+++.-+
T Consensus 85 I~a---nA~Y~~~~e~~Y~l~t~LaRplia~~lv~~A~~~ga~aIAHG~TGKGNDQ 137 (447)
T PRK05370 85 IQC---GAFHISTGGVTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDGSTYKGNDI 137 (447)
T ss_pred HHc---CCccccccCccccCCCcchHHHHHHHHHHHHHHhCCcEEEEcCCCCCCch
Confidence 221 2211 10000 11235678999999999999999998775543
No 179
>cd07186 CofD_like LPPG:FO 2-phospho-L-lactate transferase; important in F420 biosynthesis. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis.
Probab=28.62 E-value=2.4e+02 Score=25.12 Aligned_cols=63 Identities=17% Similarity=0.235 Sum_probs=39.3
Q ss_pred CccEEEEEEcC---CCchHHHHHHHHHcCCcEEEEccCCC--CchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeCC
Q 026225 146 EVQFEVAVVEG---KEKGPAIVEEARKQGVALLVLGQKKR--STTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRK 220 (241)
Q Consensus 146 ~v~v~~~~~~G---~~~~~~I~~~a~~~~~dllVmG~~~~--~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~ 220 (241)
+.+++-+...+ -...+..++.++ ++|+||+|.... |-.-.+++ ..+ ...+++++.|++.|.+-
T Consensus 157 ~~~i~~V~~~~~e~a~~~p~vl~AI~--~AD~IVlGPgsp~TSI~P~LlV---------pgI-~eAL~~s~A~vV~Vspi 224 (303)
T cd07186 157 EPEVRDVRFVGAEEARPAPEVLEAIE--DADLVIIGPSNPVTSIGPILAL---------PGI-REALRDKKAPVVAVSPI 224 (303)
T ss_pred CCCeEEEEeCCcccCCCCHHHHHHHH--hCCEEEECCCccHHHhhhhccc---------hhH-HHHHHhCCCCEEEEcCC
Confidence 35566566555 123447777777 579999997653 33333343 334 45667789999998653
No 180
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=28.44 E-value=2.2e+02 Score=20.22 Aligned_cols=72 Identities=10% Similarity=0.039 Sum_probs=40.7
Q ss_pred HHHHHHHHHhhCCCccEEEEEEcCCCchHH--HHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcC
Q 026225 133 VHSLKNMCQQKRPEVQFEVAVVEGKEKGPA--IVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNA 210 (241)
Q Consensus 133 l~~~~~~~~~~~~~v~v~~~~~~G~~~~~~--I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a 210 (241)
...+++.++++ |.+...+-..+...... |-..+ .++|+||+=+.--+.--.. .+.......
T Consensus 12 ~~~~~~~~~~~--G~~~~~hg~~~~~~~~~~~l~~~i--~~aD~VIv~t~~vsH~~~~-------------~vk~~akk~ 74 (97)
T PF10087_consen 12 ERRYKRILEKY--GGKLIHHGRDGGDEKKASRLPSKI--KKADLVIVFTDYVSHNAMW-------------KVKKAAKKY 74 (97)
T ss_pred HHHHHHHHHHc--CCEEEEEecCCCCccchhHHHHhc--CCCCEEEEEeCCcChHHHH-------------HHHHHHHHc
Confidence 34566666653 66665552233322223 44443 3789999976654332111 445667777
Q ss_pred CceEEEEeCCC
Q 026225 211 DCMAVAVRRKS 221 (241)
Q Consensus 211 ~~pVlvV~~~~ 221 (241)
.+|++.++..+
T Consensus 75 ~ip~~~~~~~~ 85 (97)
T PF10087_consen 75 GIPIIYSRSRG 85 (97)
T ss_pred CCcEEEECCCC
Confidence 89999997554
No 181
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=28.28 E-value=3.8e+02 Score=22.91 Aligned_cols=76 Identities=12% Similarity=0.097 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHhhCCCccEEEEEEcCCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHH
Q 026225 128 RGYEFVHSLKNMCQQKRPEVQFEVAVVEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCI 207 (241)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~~v~v~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi 207 (241)
-..+++..+.+.+.+. |..+-......++..+..++...++++|=||+.+.... .. ....+.
T Consensus 15 ff~~ii~gIe~~a~~~--Gy~l~l~~t~~~~~~e~~i~~l~~~~vDGiI~~s~~~~-~~---------------~l~~~~ 76 (279)
T PF00532_consen 15 FFAEIIRGIEQEAREH--GYQLLLCNTGDDEEKEEYIELLLQRRVDGIILASSEND-DE---------------ELRRLI 76 (279)
T ss_dssp HHHHHHHHHHHHHHHT--TCEEEEEEETTTHHHHHHHHHHHHTTSSEEEEESSSCT-CH---------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHc--CCEEEEecCCCchHHHHHHHHHHhcCCCEEEEecccCC-hH---------------HHHHHH
Confidence 3556667777777764 77776655555554446777778899999999855433 11 223344
Q ss_pred hcCCceEEEEeCCCc
Q 026225 208 QNADCMAVAVRRKSK 222 (241)
Q Consensus 208 ~~a~~pVlvV~~~~~ 222 (241)
.. .+|++++-+...
T Consensus 77 ~~-~iPvV~~~~~~~ 90 (279)
T PF00532_consen 77 KS-GIPVVLIDRYID 90 (279)
T ss_dssp HT-TSEEEEESS-SC
T ss_pred Hc-CCCEEEEEeccC
Confidence 44 899999977744
No 182
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=28.22 E-value=4.3e+02 Score=23.55 Aligned_cols=103 Identities=12% Similarity=0.098 Sum_probs=58.4
Q ss_pred EEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCC-CCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEEE
Q 026225 74 IMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQ-ATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEVA 152 (241)
Q Consensus 74 ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~ 152 (241)
+.|=+-+++- ..+..|...+...+..+.=|.+--|..... .......-...+...+.++.+.+... +++|++.
T Consensus 69 ~~vQl~gsdp--~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~----~iPVTVK 142 (323)
T COG0042 69 VAVQLGGSDP--ELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVG----DIPVTVK 142 (323)
T ss_pred EEEEecCCCH--HHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhC----CCCeEEE
Confidence 4444444433 456666677766663333333333332111 11122222234555666666666553 3788888
Q ss_pred EEcCCCch----HHHHHHHHHcCCcEEEEccCCC
Q 026225 153 VVEGKEKG----PAIVEEARKQGVALLVLGQKKR 182 (241)
Q Consensus 153 ~~~G~~~~----~~I~~~a~~~~~dllVmG~~~~ 182 (241)
+.-|-+.. ..|.+.+++.+++.|.+-.+.+
T Consensus 143 iRlG~d~~~~~~~~ia~~~~~~g~~~ltVHgRtr 176 (323)
T COG0042 143 IRLGWDDDDILALEIARILEDAGADALTVHGRTR 176 (323)
T ss_pred EecccCcccccHHHHHHHHHhcCCCEEEEecccH
Confidence 88887544 2588899999999999966553
No 183
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=27.57 E-value=2.1e+02 Score=24.62 Aligned_cols=56 Identities=16% Similarity=0.037 Sum_probs=41.4
Q ss_pred cCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcC--CceEEEEeCCCcCCCCeEEecccc
Q 026225 170 QGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNA--DCMAVAVRRKSKKLGGYLITTKRH 234 (241)
Q Consensus 170 ~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a--~~pVlvV~~~~~~~~~~li~t~~~ 234 (241)
..+|+++.=.+..+.-+...+ +-..+-+.++- ..||.+|++-.+....+.|||-..
T Consensus 153 A~adfVi~~YNP~s~~R~~~~---------~~a~eil~~~r~~~tpVgivrnagR~~e~v~ittL~~ 210 (249)
T COG1010 153 AEADFVIALYNPISKRRPEQL---------GRAFEILREHRSPDTPVGIVRNAGREGEEVRITTLGD 210 (249)
T ss_pred hhCCEEEEEECCccccchHHH---------HHHHHHHHHhcCCCCcEEEEecCCCCCceEEEEEhHH
Confidence 467888887777665544444 65666666665 699999999998888999998643
No 184
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=27.43 E-value=2.3e+02 Score=20.04 Aligned_cols=51 Identities=22% Similarity=0.273 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHhhCCCccEEEEEEcC-CCchHHHHHHHHHcCCcEEEEc
Q 026225 128 RGYEFVHSLKNMCQQKRPEVQFEVAVVEG-KEKGPAIVEEARKQGVALLVLG 178 (241)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~~v~v~~~~~~G-~~~~~~I~~~a~~~~~dllVmG 178 (241)
.+++.+..+.+.+.+..++..+...+.++ .+.-+..++...+.+++-|++-
T Consensus 13 ~~~~~~~~l~~~l~~~~~~~~v~~afle~~~p~~~~~l~~l~~~g~~~v~vv 64 (101)
T cd03416 13 RAAEALEALAERLRERLPGDEVELAFLELAEPSLAEALDELAAQGATRIVVV 64 (101)
T ss_pred HHHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCCHHHHHHHHHHcCCCEEEEE
Confidence 34445566666665554567788777776 5544466666666677766553
No 185
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=27.33 E-value=83 Score=30.08 Aligned_cols=26 Identities=8% Similarity=0.166 Sum_probs=13.3
Q ss_pred CCCchHHHHHHHH-HcCCcEEEEccCCC
Q 026225 156 GKEKGPAIVEEAR-KQGVALLVLGQKKR 182 (241)
Q Consensus 156 G~~~~~~I~~~a~-~~~~dllVmG~~~~ 182 (241)
|++.. .+++.++ +.++.+|.+.+.+.
T Consensus 101 GDDi~-~v~~~~~~~~~~pVi~v~t~~f 127 (513)
T CHL00076 101 QEDLQ-NFVDRASIESDSDVILADVNHY 127 (513)
T ss_pred hcCHH-HHHHHhhcccCCCEEEeCCCCC
Confidence 55555 5555544 34555555555443
No 186
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=27.32 E-value=3e+02 Score=24.32 Aligned_cols=129 Identities=8% Similarity=0.124 Sum_probs=64.0
Q ss_pred CEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCC------CCc-hhhHhhhhHHHHHHHHHHHHHHHhhC
Q 026225 72 RKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQ------ATG-EESGKQRAPRGYEFVHSLKNMCQQKR 144 (241)
Q Consensus 72 ~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~------~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~ 144 (241)
+-||..-.++-.|- +|.++..+|... ...++||-....... ... ..-.-.....+.++|+.+....+...
T Consensus 25 r~vL~G~~GsGKS~-~L~q~~~~A~~~--~wiVl~vp~a~~~~~~~~~~~~~~~~~~~~~qP~~a~~~L~~~~~~N~~~L 101 (309)
T PF10236_consen 25 RYVLTGERGSGKSV-LLAQAVHYAREN--GWIVLYVPSAQDWVNGTTDYAPSPYNPGLYDQPMYAAKWLKKFLKANEELL 101 (309)
T ss_pred EEEEECCCCCCHHH-HHHHHHHHHHhC--CEEEEEcCCHHHHhhCCeeEeeCCCCCCeeecHHHHHHHHHHHHHHhHHHH
Confidence 33443334444444 667777777544 688888866432111 010 11111223345555555555543322
Q ss_pred CCccEEEEEEc----CCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCC-ceEEEEeC
Q 026225 145 PEVQFEVAVVE----GKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNAD-CMAVAVRR 219 (241)
Q Consensus 145 ~~v~v~~~~~~----G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~-~pVlvV~~ 219 (241)
..+++...+.. ..+.+..|.++++. |.......+..+ +-+-+.+..++. +|||+.=+
T Consensus 102 ~~i~~s~~~~~~~~~~~~~g~tL~dLv~~--------g~~~~~~a~~~~----------~~l~~EL~~~~~~~PVL~avD 163 (309)
T PF10236_consen 102 KKIKLSKDYKWSKRESTPKGSTLLDLVEQ--------GINDPKYAWDVF----------QALIRELKAQSKRPPVLVAVD 163 (309)
T ss_pred HhccccccccccccccCCCCCCHHHHHHh--------hcccchhHHHHH----------HHHHHHHHhcccCCceEEEeh
Confidence 22443322222 23333356666652 333322222222 557789999998 99999865
Q ss_pred CC
Q 026225 220 KS 221 (241)
Q Consensus 220 ~~ 221 (241)
.-
T Consensus 164 ~~ 165 (309)
T PF10236_consen 164 GF 165 (309)
T ss_pred hh
Confidence 53
No 187
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=27.19 E-value=4.3e+02 Score=23.22 Aligned_cols=49 Identities=12% Similarity=0.147 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHhhCCCccEEEEEEcCCC----chHHHHHHHHHcCCcEEEEccC
Q 026225 127 PRGYEFVHSLKNMCQQKRPEVQFEVAVVEGKE----KGPAIVEEARKQGVALLVLGQK 180 (241)
Q Consensus 127 ~~~~~~l~~~~~~~~~~~~~v~v~~~~~~G~~----~~~~I~~~a~~~~~dllVmG~~ 180 (241)
+...+.++.+++.+ ++++.+.+.-|.. ....+++.+++.++|.|++..+
T Consensus 117 ~~~~ei~~~vr~~~-----~~pv~vKir~g~~~~~~~~~~~a~~l~~~G~d~i~vh~r 169 (319)
T TIGR00737 117 DLIGKIVKAVVDAV-----DIPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTLHGR 169 (319)
T ss_pred HHHHHHHHHHHhhc-----CCCEEEEEEcccCCCcchHHHHHHHHHHhCCCEEEEEcc
Confidence 44555555554433 4566666654321 1225666677889999998644
No 188
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=27.10 E-value=2.5e+02 Score=20.46 Aligned_cols=38 Identities=13% Similarity=0.071 Sum_probs=26.3
Q ss_pred CccEEEEEEcCCCchHHHHHHHHHcCCcEEEEccCCCCch
Q 026225 146 EVQFEVAVVEGKEKGPAIVEEARKQGVALLVLGQKKRSTT 185 (241)
Q Consensus 146 ~v~v~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~ 185 (241)
|.++ .........+.+++.+.+.++|+|++........
T Consensus 27 G~~V--~~lg~~~~~~~l~~~~~~~~pdvV~iS~~~~~~~ 64 (119)
T cd02067 27 GFEV--IDLGVDVPPEEIVEAAKEEDADAIGLSGLLTTHM 64 (119)
T ss_pred CCEE--EECCCCCCHHHHHHHHHHcCCCEEEEeccccccH
Confidence 6665 3333333445999999999999999987744444
No 189
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=27.07 E-value=6e+02 Score=24.80 Aligned_cols=95 Identities=23% Similarity=0.247 Sum_probs=51.8
Q ss_pred CCCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccE
Q 026225 70 SGRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQF 149 (241)
Q Consensus 70 ~~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v 149 (241)
..++|+|.-|.+-+.-.+-......+.+.+..-+..++ |.....+++-. . +.++.+. +. +.++
T Consensus 68 ~~e~I~I~gDyD~DGitstail~~~L~~~g~~~~~~~I--P~R~~eGYGl~------~---~~i~~~~---~~---~~~L 130 (575)
T PRK11070 68 EGTRIIVVGDFDADGATSTALSVLALRSLGCSNVDYLV--PNRFEDGYGLS------P---EVVDQAH---AR---GAQL 130 (575)
T ss_pred CCCEEEEEEecCccHHHHHHHHHHHHHHcCCCceEEEe--CCCCcCCCCCC------H---HHHHHHH---hc---CCCE
Confidence 56799999888644333333333444455542222233 22222222211 0 1112221 11 5666
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCcEEEEccCCC
Q 026225 150 EVAVVEGKEKGPAIVEEARKQGVALLVLGQKKR 182 (241)
Q Consensus 150 ~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~~ 182 (241)
-+-+-.|.... .-+++|++.++|.||...|..
T Consensus 131 iItvD~Gi~~~-e~i~~a~~~gidvIVtDHH~~ 162 (575)
T PRK11070 131 IVTVDNGISSH-AGVAHAHALGIPVLVTDHHLP 162 (575)
T ss_pred EEEEcCCcCCH-HHHHHHHHCCCCEEEECCCCC
Confidence 66666677654 788899999999999998753
No 190
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=26.87 E-value=1.2e+02 Score=28.30 Aligned_cols=48 Identities=21% Similarity=0.171 Sum_probs=31.9
Q ss_pred chHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEe
Q 026225 159 KGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVR 218 (241)
Q Consensus 159 ~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~ 218 (241)
.+++|.+..++.++|.+||-+.-..-.+. |.+..+-|.++.+||+.+-
T Consensus 324 ~g~eIa~~Lk~dgVDAVILTstCgtC~r~------------~a~m~keiE~~GiPvv~~~ 371 (431)
T TIGR01918 324 FAKEFVVELKQGGVDAVILTSTUGTCTRC------------GATMVKEIERAGIPVVHMC 371 (431)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCcchhH------------HHHHHHHHHHcCCCEEEEe
Confidence 34567777777778888777654444444 5566777777777777663
No 191
>PRK13606 LPPG:FO 2-phospho-L-lactate transferase; Provisional
Probab=26.71 E-value=2.2e+02 Score=25.42 Aligned_cols=60 Identities=20% Similarity=0.206 Sum_probs=39.1
Q ss_pred CccEEEEEEcCC---CchHHHHHHHHHcCCcEEEEccCCC--CchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeC
Q 026225 146 EVQFEVAVVEGK---EKGPAIVEEARKQGVALLVLGQKKR--STTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRR 219 (241)
Q Consensus 146 ~v~v~~~~~~G~---~~~~~I~~~a~~~~~dllVmG~~~~--~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~ 219 (241)
+.+++-+...|. ...+..++.++ ++|+||+|.... |-.--+++ ..+.+.+ ++.||+.|.+
T Consensus 159 ~~~v~~v~~~~~~~a~a~p~vl~AI~--~AD~IiiGPgnp~TSI~P~L~v---------~gi~eAL---~~a~vV~Vsp 223 (303)
T PRK13606 159 EPPVLDVVFVGAEKAKPAPGVLEAIE--EADAVIIGPSNPVTSIGPILAV---------PGIREAL---TEAPVVAVSP 223 (303)
T ss_pred CCCeEEEEEeCcccCCCCHHHHHHHH--hCCEEEECCCccHHhhchhccc---------hhHHHHH---hCCCEEEEcC
Confidence 456666666652 23447777776 579999997654 33334444 6677777 7889997644
No 192
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=26.67 E-value=4.1e+02 Score=22.73 Aligned_cols=69 Identities=12% Similarity=0.133 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhhCCCccEEEEEEcCCC---chHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHh
Q 026225 132 FVHSLKNMCQQKRPEVQFEVAVVEGKE---KGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQ 208 (241)
Q Consensus 132 ~l~~~~~~~~~~~~~v~v~~~~~~G~~---~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~ 208 (241)
.++++.+.++..+ ++++. -...|-- -.+.|++.+...++|+|++|--. +.++.++ .+..+
T Consensus 117 v~~~a~~~l~~~y-~l~i~-g~~~Gyf~~~e~~~i~~~I~~s~~dil~VglG~--PkQE~~~-------------~~~~~ 179 (243)
T PRK03692 117 VLAQTEAKLRTQW-NVNIV-GSQDGYFTPEQRQALFERIHASGAKIVTVAMGS--PKQEIFM-------------RDCRL 179 (243)
T ss_pred HHHHHHHHHHHHh-CCEEE-EEeCCCCCHHHHHHHHHHHHhcCCCEEEEECCC--cHHHHHH-------------HHHHH
Confidence 4445555554443 56553 1234432 23579999999999999998543 2344432 45566
Q ss_pred cCCceEEEE
Q 026225 209 NADCMAVAV 217 (241)
Q Consensus 209 ~a~~pVlvV 217 (241)
..+.+|++-
T Consensus 180 ~~~~~v~~g 188 (243)
T PRK03692 180 VYPDALYMG 188 (243)
T ss_pred hCCCCEEEE
Confidence 667777553
No 193
>PF13362 Toprim_3: Toprim domain
Probab=26.40 E-value=1.7e+02 Score=20.61 Aligned_cols=39 Identities=18% Similarity=0.246 Sum_probs=28.7
Q ss_pred CCCCEEEEeecCCHH--HHHHHHHHHHhhccCCCEEEEEEE
Q 026225 69 SSGRKIMIVVDSSNE--AKGALQWSLTHTVQSQDKVVLVYV 107 (241)
Q Consensus 69 ~~~~~ILVavD~s~~--s~~al~~A~~~a~~~~~~l~LlhV 107 (241)
..+++|+|+.|.... ...+...+.+.+...+-.+.++..
T Consensus 39 ~~~~~vii~~D~D~~~~G~~~a~~~~~~~~~~g~~~~~~~p 79 (96)
T PF13362_consen 39 EPGRRVIIAADNDKANEGQKAAEKAAERLEAAGIAVSIVEP 79 (96)
T ss_pred CCCCeEEEEECCCCchhhHHHHHHHHHHHHhCCCeEEEECC
Confidence 367899999999777 777777777777666666655544
No 194
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=26.25 E-value=2e+02 Score=22.54 Aligned_cols=58 Identities=12% Similarity=0.207 Sum_probs=35.3
Q ss_pred ccEEEEEEcCCCchHHHHHHHHHc--CCcEEEEccCCCCchhhHhhhhcCCCCCCCCHH-HHHHhcCCceEEEEeCC
Q 026225 147 VQFEVAVVEGKEKGPAIVEEARKQ--GVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFV-EYCIQNADCMAVAVRRK 220 (241)
Q Consensus 147 v~v~~~~~~G~~~~~~I~~~a~~~--~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~-~~vi~~a~~pVlvV~~~ 220 (241)
..++..+...+.-+ +|++.+.+. ++|-||+-.-+.+. .|++ ...+....+|++=|+-.
T Consensus 41 ~g~~v~~~QSN~EG-elid~I~~a~~~~dgiIINpga~th---------------tS~Ai~DAl~~~~~P~vEVHiS 101 (140)
T PF01220_consen 41 LGVEVEFFQSNHEG-ELIDWIHEARDDVDGIIINPGAYTH---------------TSIAIRDALKAISIPVVEVHIS 101 (140)
T ss_dssp TTEEEEEEE-SSHH-HHHHHHHHHTCTTSEEEEE-GGGGH---------------T-HHHHHHHHCCTS-EEEEESS
T ss_pred CCCeEEEEecCCHH-HHHHHHHHHHhhCCEEEEccchhcc---------------ccHHHHHHHHcCCCCEEEEEcC
Confidence 34555555555334 888888754 68999997654333 3333 33777789999999654
No 195
>COG1162 Predicted GTPases [General function prediction only]
Probab=26.11 E-value=4.7e+02 Score=23.29 Aligned_cols=141 Identities=13% Similarity=0.121 Sum_probs=66.7
Q ss_pred CCEEEEe-ecCCHHHHHHHHHHHHhhccCCCE-EEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCcc
Q 026225 71 GRKIMIV-VDSSNEAKGALQWSLTHTVQSQDK-VVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQ 148 (241)
Q Consensus 71 ~~~ILVa-vD~s~~s~~al~~A~~~a~~~~~~-l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~ 148 (241)
.+.|+|. .-.-+-+...|+..+-.|...+-+ |.+|.=++-.. .+.... +++....... |++
T Consensus 81 d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~-------------~~~~~~--~~~~~~y~~~--gy~ 143 (301)
T COG1162 81 DQAIIVVSLVDPDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLD-------------DEEAAV--KELLREYEDI--GYP 143 (301)
T ss_pred ceEEEEEeccCCCCCHHHHHHHHHHHHHcCCcEEEEEEccccCc-------------chHHHH--HHHHHHHHhC--Cee
Confidence 3444443 333455667888888888777754 44444333211 011111 2222333321 444
Q ss_pred EEEEEEc-CCCchHHHHHHHHHcCCcEEEEccCCCCc--hhhHhhhhcCC-CCCCCCHHHHH--HhcCCceEEEEeCCCc
Q 026225 149 FEVAVVE-GKEKGPAIVEEARKQGVALLVLGQKKRST--TWRLFMMWAGN-RVPGGSFVEYC--IQNADCMAVAVRRKSK 222 (241)
Q Consensus 149 v~~~~~~-G~~~~~~I~~~a~~~~~dllVmG~~~~~~--~~~~l~~~~~~-~~~~Gsv~~~v--i~~a~~pVlvV~~~~~ 222 (241)
+-..-.. +...+ .|.++.+.+ -.+++|+.|-+. +-..+. .+ ..--|.+++.. =+|+..-+-+++-+
T Consensus 144 v~~~s~~~~~~~~-~l~~~l~~~--~svl~GqSGVGKSSLiN~L~---p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~-- 215 (301)
T COG1162 144 VLFVSAKNGDGLE-ELAELLAGK--ITVLLGQSGVGKSTLINALL---PELNQKTGEISEKLGRGRHTTTHVELFPLP-- 215 (301)
T ss_pred EEEecCcCcccHH-HHHHHhcCC--eEEEECCCCCcHHHHHHhhC---chhhhhhhhhcccCCCCCCccceEEEEEcC--
Confidence 4333322 33333 566655533 778888876532 222221 11 00013333332 24455555555433
Q ss_pred CCCCeEEeccccccc
Q 026225 223 KLGGYLITTKRHKDF 237 (241)
Q Consensus 223 ~~~~~li~t~~~~~~ 237 (241)
.+|++|+|=..+.|
T Consensus 216 -~gG~iiDTPGf~~~ 229 (301)
T COG1162 216 -GGGWIIDTPGFRSL 229 (301)
T ss_pred -CCCEEEeCCCCCcc
Confidence 68999999765543
No 196
>KOG4584 consensus Uncharacterized conserved protein [General function prediction only]
Probab=26.03 E-value=1.2e+02 Score=27.09 Aligned_cols=103 Identities=18% Similarity=0.187 Sum_probs=56.4
Q ss_pred CCCCCEEEEeecCC--HHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCC
Q 026225 68 VSSGRKIMIVVDSS--NEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRP 145 (241)
Q Consensus 68 ~~~~~~ILVavD~s--~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 145 (241)
++.++.+|+.+|.| +.-...+-+|.+++. .|.++.|+.-..|..+. ....+...+++.+...|.....
T Consensus 196 ~~p~K~~lif~DNSG~DvILGilPf~Rellr-~gt~vil~ans~palNd---------vt~~el~~l~~~~~~~~~~l~~ 265 (348)
T KOG4584|consen 196 GKPHKCALIFVDNSGFDVILGILPFARELLR-RGTEVILCANSSPALND---------VTYSELKELAAELANDCNVLLK 265 (348)
T ss_pred CCCcceEEEEecCCCcceeeeecHHHHHHHh-CCCeEEEEecCcchhcc---------ccHHHHHHHHHhhccCChHHHH
Confidence 46789999999976 445677888888874 45566666554443211 1123333444444443332211
Q ss_pred CccEEE--EEEcCC--------CchHHHHHHHHHcCCcEEEEccCCC
Q 026225 146 EVQFEV--AVVEGK--------EKGPAIVEEARKQGVALLVLGQKKR 182 (241)
Q Consensus 146 ~v~v~~--~~~~G~--------~~~~~I~~~a~~~~~dllVmG~~~~ 182 (241)
.++... .+..|. .+.+++...++ ++||+|+-.-+|
T Consensus 266 ~~~~~~ll~~~~G~~~pciDlrrvsqeLa~l~~--daDLVViEGMGR 310 (348)
T KOG4584|consen 266 AIDTGQLLVVQNGQDSPCIDLRRVSQELAYLSS--DADLVVIEGMGR 310 (348)
T ss_pred HhhhcceEEeecCCCCceeeHHhhhHHHHHHhc--CCCEEEEeccch
Confidence 222221 222232 23445666655 899999976555
No 197
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=25.71 E-value=4.4e+02 Score=22.77 Aligned_cols=41 Identities=27% Similarity=0.275 Sum_probs=24.2
Q ss_pred CccEEEEEEcCCCchHHHHHHHHHcCCcEEEEccCCCCchhh
Q 026225 146 EVQFEVAVVEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWR 187 (241)
Q Consensus 146 ~v~v~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~ 187 (241)
+++++............+.+.+.+.++|.||.. -|.+.+..
T Consensus 27 g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vv~~-GGDGTi~e 67 (293)
T TIGR03702 27 GIQLHVRVTWEKGDAQRYVAEALALGVSTVIAG-GGDGTLRE 67 (293)
T ss_pred CCeEEEEEecCCCCHHHHHHHHHHcCCCEEEEE-cCChHHHH
Confidence 677766655543334477777766777876643 34455544
No 198
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=25.53 E-value=1.5e+02 Score=26.88 Aligned_cols=26 Identities=8% Similarity=0.243 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHhhCCCccEEEEEEcC
Q 026225 127 PRGYEFVHSLKNMCQQKRPEVQFEVAVVEG 156 (241)
Q Consensus 127 ~~~~~~l~~~~~~~~~~~~~v~v~~~~~~G 156 (241)
+...+.+.++...+.+ .+++.+++-|
T Consensus 23 ~d~~~~f~~~l~~a~~----~~vD~vliAG 48 (390)
T COG0420 23 EDQKKAFDELLEIAKE----EKVDFVLIAG 48 (390)
T ss_pred HHHHHHHHHHHHHHHH----ccCCEEEEcc
Confidence 3444445555555554 3345555554
No 199
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=25.34 E-value=3.9e+02 Score=22.56 Aligned_cols=75 Identities=11% Similarity=0.084 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHhhCCCccEEEEEEcCCC-chHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHH
Q 026225 129 GYEFVHSLKNMCQQKRPEVQFEVAVVEGKE-KGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCI 207 (241)
Q Consensus 129 ~~~~l~~~~~~~~~~~~~v~v~~~~~~G~~-~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi 207 (241)
..+.++.+.+.+++. |+++.......++ ....+++....+++|-||++........ ..-..+
T Consensus 41 ~~~~~~~i~~~~~~~--G~~~~~~~~~~d~~~~~~~~~~l~~~~~dgiii~~~~~~~~~---------------~~l~~~ 103 (295)
T PRK10653 41 FVSLKDGAQKEADKL--GYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVG---------------NAVKMA 103 (295)
T ss_pred HHHHHHHHHHHHHHc--CCeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCChHHHH---------------HHHHHH
Confidence 345556666666664 7666554333332 2234455556678997887754322111 112355
Q ss_pred hcCCceEEEEeCC
Q 026225 208 QNADCMAVAVRRK 220 (241)
Q Consensus 208 ~~a~~pVlvV~~~ 220 (241)
+...+|++++...
T Consensus 104 ~~~~ipvV~~~~~ 116 (295)
T PRK10653 104 NQANIPVITLDRG 116 (295)
T ss_pred HHCCCCEEEEccC
Confidence 5678999999654
No 200
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=25.31 E-value=4.2e+02 Score=22.78 Aligned_cols=43 Identities=12% Similarity=0.110 Sum_probs=27.7
Q ss_pred HHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHH--HHhcCCceEEEEeCCCc
Q 026225 164 VEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEY--CIQNADCMAVAVRRKSK 222 (241)
Q Consensus 164 ~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~--vi~~a~~pVlvV~~~~~ 222 (241)
....+++++|.||-=..|.. |.+.++ ..+...+||++|+++.-
T Consensus 190 ~al~~~~~i~~lVtK~SG~~----------------Gg~~eKi~AA~~lgi~vivI~RP~~ 234 (256)
T TIGR00715 190 KALLREYRIDAVVTKASGEQ----------------GGELEKVKAAEALGINVIRIARPQT 234 (256)
T ss_pred HHHHHHcCCCEEEEcCCCCc----------------cchHHHHHHHHHcCCcEEEEeCCCC
Confidence 34456677777775333321 445555 45677999999988864
No 201
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=25.21 E-value=5.6e+02 Score=23.86 Aligned_cols=104 Identities=13% Similarity=0.142 Sum_probs=0.0
Q ss_pred CCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEE
Q 026225 71 GRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFE 150 (241)
Q Consensus 71 ~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~ 150 (241)
++++.|..+. ..++.++. ++...|.++..+.+..... ...+.+... ..-+
T Consensus 326 Gkrv~i~~g~----~~~~~l~~-~l~elGmevv~~~t~~~~~---------------~d~~~l~~~----------~~~~ 375 (456)
T TIGR01283 326 GKKAAIYTGG----VKSWSLVS-ALQDLGMEVVATGTQKGTE---------------EDYARIREL----------MGEG 375 (456)
T ss_pred CCEEEEEcCC----chHHHHHH-HHHHCCCEEEEEeeecCCH---------------HHHHHHHHH----------cCCC
Q ss_pred EEEEcCCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeCCCcCCC-Ce
Q 026225 151 VAVVEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRKSKKLG-GY 227 (241)
Q Consensus 151 ~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~~~~~~-~~ 227 (241)
..+....+.. .+.+.+++.++|+++ | ++...++..+..+|.+.+......+. ||
T Consensus 376 ~~v~~~~d~~-e~~~~i~~~~pDl~i-g---------------------~~~~~~~a~k~giP~i~~~~~~~~p~~Gy 430 (456)
T TIGR01283 376 TVMLDDANPR-ELLKLLLEYKADLLI-A---------------------GGKERYTALKLGIPFCDINHEREHPYAGY 430 (456)
T ss_pred eEEEeCCCHH-HHHHHHhhcCCCEEE-E---------------------ccchHHHHHhcCCCEEEcccccCCCCcch
No 202
>PRK13337 putative lipid kinase; Reviewed
Probab=25.16 E-value=4.6e+02 Score=22.80 Aligned_cols=71 Identities=10% Similarity=0.019 Sum_probs=38.4
Q ss_pred HHHHHHHHhhCCCccEEEEEEcCCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhc-CCc
Q 026225 134 HSLKNMCQQKRPEVQFEVAVVEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQN-ADC 212 (241)
Q Consensus 134 ~~~~~~~~~~~~~v~v~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~-a~~ 212 (241)
.++...+.+. +.+++....+.......+.+.+.+.++|+||+. -|.+.+.. +++.++.. ...
T Consensus 22 ~~~~~~l~~~--~~~~~~~~t~~~~~a~~~a~~~~~~~~d~vvv~-GGDGTl~~--------------vv~gl~~~~~~~ 84 (304)
T PRK13337 22 PDVLQKLEQA--GYETSAHATTGPGDATLAAERAVERKFDLVIAA-GGDGTLNE--------------VVNGIAEKENRP 84 (304)
T ss_pred HHHHHHHHHc--CCEEEEEEecCCCCHHHHHHHHHhcCCCEEEEE-cCCCHHHH--------------HHHHHhhCCCCC
Confidence 3444444443 677776666644444467776666677876653 34444433 33333322 245
Q ss_pred eEEEEeCCC
Q 026225 213 MAVAVRRKS 221 (241)
Q Consensus 213 pVlvV~~~~ 221 (241)
|+-++|-+.
T Consensus 85 ~lgiiP~GT 93 (304)
T PRK13337 85 KLGIIPVGT 93 (304)
T ss_pred cEEEECCcC
Confidence 777776553
No 203
>cd07187 YvcK_like family of mostly uncharacterized proteins similar to B.subtilis YvcK. One member of this protein family, YvcK from Bacillus subtilis, has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and the pentose phosphate pathway. In general, this family of mostly uncharacterized proteins is related to the CofD-like protein family. CofD has been characterized as a 2-phospho-L-lactate transferase involved in F420 biosynthesis. This family appears to have the same conserved phosphate binding site as the other family in this hierarchy, but a different substrate binding site.
Probab=25.01 E-value=3e+02 Score=24.52 Aligned_cols=64 Identities=17% Similarity=0.205 Sum_probs=41.4
Q ss_pred ccEEEEEEcCC--CchHHHHHHHHHcCCcEEEEccCCC--CchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeCCCc
Q 026225 147 VQFEVAVVEGK--EKGPAIVEEARKQGVALLVLGQKKR--STTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRKSK 222 (241)
Q Consensus 147 v~v~~~~~~G~--~~~~~I~~~a~~~~~dllVmG~~~~--~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~~~ 222 (241)
-+++-+..++. ...+..++.++ ++|+||+|--.- |-+-.++. ..+.+ .+++++|+++.|.+-..
T Consensus 151 ~~I~~v~l~~~~~~~~~~a~~AI~--~AD~Iv~gPGSlyTSI~P~Llv---------~gI~e-Ai~~s~a~kV~v~N~~~ 218 (308)
T cd07187 151 SPIKRVFLEPPDPKANPEALEAIE--EADLIVYGPGSLYTSILPNLLV---------KGIAE-AIRASKAPKVYICNLMT 218 (308)
T ss_pred CCceEEEEECCCCCCCHHHHHHHH--hCCEEEECCCccHHHhhhhcCc---------hhHHH-HHHhCCCCEEEEecCCC
Confidence 45555555543 34457788776 679999997653 33444444 54555 45778899999976643
No 204
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=24.96 E-value=1.1e+02 Score=28.22 Aligned_cols=26 Identities=23% Similarity=0.404 Sum_probs=16.8
Q ss_pred CCCchHHHHHHHH-HcCCcEEEEccCCC
Q 026225 156 GKEKGPAIVEEAR-KQGVALLVLGQKKR 182 (241)
Q Consensus 156 G~~~~~~I~~~a~-~~~~dllVmG~~~~ 182 (241)
|++.. .|++.++ +.++.+|.+-+.+.
T Consensus 105 GdDi~-~v~~~~~~~~~~pvi~v~t~gf 131 (426)
T cd01972 105 GDDVE-SVVEELEDEIGIPVVALHCEGF 131 (426)
T ss_pred ccCHH-HHHHHHHHhhCCCEEEEeCCcc
Confidence 77776 6666654 45677777766554
No 205
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=24.90 E-value=6.3e+02 Score=25.62 Aligned_cols=144 Identities=12% Similarity=0.099 Sum_probs=76.6
Q ss_pred CCEEEEeecCCHHHHHHHHHHHHhhccC---CCEEEEEEEEcCCCCCCCCchhhHhh----------hhHHHHHHHHHHH
Q 026225 71 GRKIMIVVDSSNEAKGALQWSLTHTVQS---QDKVVLVYVIKPSNNKQATGEESGKQ----------RAPRGYEFVHSLK 137 (241)
Q Consensus 71 ~~~ILVavD~s~~s~~al~~A~~~a~~~---~~~l~LlhV~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~~ 137 (241)
.=+||.++...++...++.. ++..... --.+.++|.++-.....+..-..... ..+.....++.++
T Consensus 443 ~Lril~cl~~~~~is~~i~~-le~~~~~~~~p~~v~~lhlveL~~~~~~~li~h~~~~~~~~~~~s~~~~~i~~aF~~f~ 521 (769)
T KOG1650|consen 443 ELRILTCLHGPENISGIINL-LELSSGSLESPLSVYALHLVELVGRATPLLISHKLRKNGRVESRSSSSDQINVAFEAFE 521 (769)
T ss_pred ceEEEEEecCCCcchHHHHH-HHHcCCCCCCCcceeeeeeeecccccchhhhhhhhccccccccccccchhhHHHHHHHH
Confidence 46899999887776655554 4444332 33578888887432111100000000 0112222223332
Q ss_pred HHHHhhCCCccEEEEEEc--CCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEE
Q 026225 138 NMCQQKRPEVQFEVAVVE--GKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAV 215 (241)
Q Consensus 138 ~~~~~~~~~v~v~~~~~~--G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVl 215 (241)
+.- ..++-++..... -+...+.|+..|...+.+++++.-+++-....-+ -+.....-.+...++.++||.|-
T Consensus 522 ~~~---~~~v~v~~~Ta~s~~~~m~edic~la~~~~~~liilpfhk~~~~~~~~---e~~~~~~r~in~~vl~~aPCSVg 595 (769)
T KOG1650|consen 522 KLS---QEGVMVRTFTALSPEKLMHEDICTLALDKGVSLIILPFHKHWSDGGTL---ESDDPAIRELNRNVLKNAPCSVG 595 (769)
T ss_pred Hhc---CCcEEEEeehhhCChhhchhhhhHHHHhhCCcEEEeehhhhccCCCce---ecCcHHHHHHHHHHHhcCCCeEE
Confidence 211 113544443333 3344558999999999999999977651111000 00001113577889999999998
Q ss_pred EEeCCC
Q 026225 216 AVRRKS 221 (241)
Q Consensus 216 vV~~~~ 221 (241)
+.=+++
T Consensus 596 IlvdRg 601 (769)
T KOG1650|consen 596 ILVDRG 601 (769)
T ss_pred EEEecC
Confidence 886654
No 206
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=24.81 E-value=4.7e+02 Score=22.77 Aligned_cols=159 Identities=11% Similarity=0.063 Sum_probs=76.1
Q ss_pred cccccccccCCCCCEEEEeecCCHH------------HHHHHHHHHHhhccCCCEEEEEEEEcCCCCC----C-CCchhh
Q 026225 59 EKSNDGQKLVSSGRKIMIVVDSSNE------------AKGALQWSLTHTVQSQDKVVLVYVIKPSNNK----Q-ATGEES 121 (241)
Q Consensus 59 ~~~~~~~~~~~~~~~ILVavD~s~~------------s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~----~-~~~~~~ 121 (241)
..|....++....-.||+++|.|.. ++..+..++.. ...+++-++-.-...... . ...+..
T Consensus 48 kIwlRRtkpskr~~qIvlaID~S~SM~~~~~~~~aleak~lIs~al~~--Le~g~vgVv~Fg~~~~~v~Plt~d~~~~a~ 125 (266)
T cd01460 48 KIWLRRTKPAKRDYQILIAIDDSKSMSENNSKKLALESLCLVSKALTL--LEVGQLGVCSFGEDVQILHPFDEQFSSQSG 125 (266)
T ss_pred ceEEEeccCCccCceEEEEEecchhcccccccccHHHHHHHHHHHHHh--CcCCcEEEEEeCCCceEeCCCCCCchhhHH
Confidence 4455556666677789999998643 22223333322 245677666554432100 0 000000
Q ss_pred --------HhhhhHHHHHHHHHHHHHHHhhC----CC--ccEEEEEEcCC--C---chHHHHHHHHHcCCcEEEEccCCC
Q 026225 122 --------GKQRAPRGYEFVHSLKNMCQQKR----PE--VQFEVAVVEGK--E---KGPAIVEEARKQGVALLVLGQKKR 182 (241)
Q Consensus 122 --------~~~~~~~~~~~l~~~~~~~~~~~----~~--v~v~~~~~~G~--~---~~~~I~~~a~~~~~dllVmG~~~~ 182 (241)
...........+....+.++..+ .+ -++...+.+|. . ....+++.+.+.++-+++++-...
T Consensus 126 ~~~l~~~~f~~~~Tni~~aL~~a~~~f~~~~~~~~s~~~~qlilLISDG~~~~~e~~~~~~~r~a~e~~i~l~~I~ld~~ 205 (266)
T cd01460 126 PRILNQFTFQQDKTDIANLLKFTAQIFEDARTQSSSGSLWQLLLIISDGRGEFSEGAQKVRLREAREQNVFVVFIIIDNP 205 (266)
T ss_pred HHHhCcccCCCCCCcHHHHHHHHHHHHHhhhccccccccccEEEEEECCCcccCccHHHHHHHHHHHcCCeEEEEEEcCC
Confidence 00011123333444444443321 11 16777888887 3 233557788888999999987654
Q ss_pred CchhhHhhh-hcCCCCCCCC-HHHHHHhcCCceEEEEeCC
Q 026225 183 STTWRLFMM-WAGNRVPGGS-FVEYCIQNADCMAVAVRRK 220 (241)
Q Consensus 183 ~~~~~~l~~-~~~~~~~~Gs-v~~~vi~~a~~pVlvV~~~ 220 (241)
..-..++-| -+. ..+.+. ..+.=++..|.|--+|=+.
T Consensus 206 ~~~~SI~d~~~~~-~~~~~~~~l~~Yl~~fpfpYy~~~~~ 244 (266)
T cd01460 206 DNKQSILDIKVVS-FKNDKSGVITPYLDEFPFPYYVIVRD 244 (266)
T ss_pred CCCCCcccccccc-cCCCCccHHHHHHhcCCCCeEEEecC
Confidence 111112210 000 000112 4455566667776666444
No 207
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=24.65 E-value=2.3e+02 Score=22.41 Aligned_cols=57 Identities=14% Similarity=0.194 Sum_probs=33.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHc--CCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeCC
Q 026225 149 FEVAVVEGKEKGPAIVEEARKQ--GVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRK 220 (241)
Q Consensus 149 v~~~~~~G~~~~~~I~~~a~~~--~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~ 220 (241)
+++.+...+.-+ +|++.+.+. ++|-||+-.-..+...- .....+....+|++=|+-.
T Consensus 44 ~~~~~~QSN~EG-elId~i~~a~~~~dgiIINpga~THtSi--------------Al~DAl~~~~~P~VEVHiS 102 (146)
T PRK13015 44 LEVEFRQSNHEG-ELIDWIHEARGDVAGIVINPGAYTHTSV--------------AIRDALAALELPVIEVHIS 102 (146)
T ss_pred CEEEEEeeCcHH-HHHHHHHHhhhcCCEEEEcchHHhhhHH--------------HHHHHHHcCCCCEEEEEcC
Confidence 344444444323 677777653 57899997554433221 2234667789999998643
No 208
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=24.64 E-value=3.3e+02 Score=22.66 Aligned_cols=59 Identities=10% Similarity=0.126 Sum_probs=37.0
Q ss_pred HHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeCCC----cCCCCeEEec
Q 026225 162 AIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRKS----KKLGGYLITT 231 (241)
Q Consensus 162 ~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~~----~~~~~~li~t 231 (241)
.|.+.+.+.+.|.|.+|.+..-....+ ..+...+=++.++||++.+... +.-+.|++.+
T Consensus 15 ~ia~~v~~~gtDaI~VGGS~gvt~~~~-----------~~~v~~ik~~~~lPvilfp~~~~~i~~~aD~~~~~s 77 (205)
T TIGR01769 15 KIAKNAKDAGTDAIMVGGSLGIVESNL-----------DQTVKKIKKITNLPVILFPGNVNGLSRYADAVFFMS 77 (205)
T ss_pred HHHHHHHhcCCCEEEEcCcCCCCHHHH-----------HHHHHHHHhhcCCCEEEECCCccccCcCCCEEEEEE
Confidence 355566778899999986531111222 2344555555789999986543 3566777776
No 209
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=24.55 E-value=4.3e+02 Score=24.11 Aligned_cols=64 Identities=16% Similarity=0.196 Sum_probs=47.8
Q ss_pred CCccEEEEEEcCCCchHHHHHHHHHcCCcEEEEccCCC-CchhhHhhhhcCCCCCCC----------CHHHHHHhcCCce
Q 026225 145 PEVQFEVAVVEGKEKGPAIVEEARKQGVALLVLGQKKR-STTWRLFMMWAGNRVPGG----------SFVEYCIQNADCM 213 (241)
Q Consensus 145 ~~v~v~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~~-~~~~~~l~~~~~~~~~~G----------sv~~~vi~~a~~p 213 (241)
+++.+...-.+|-...+.++++.++.+.|-+=+.-+.- ....+.|. | .+++++++ +.+.
T Consensus 188 ~~v~vVSmQTng~~L~~~lv~eLeeAGLdRiNlSv~aLDpk~Ak~L~---------G~~dYdv~kvle~aE~i~~-a~id 257 (414)
T COG2100 188 KGVEVVSMQTNGVLLSKKLVDELEEAGLDRINLSVDALDPKLAKMLA---------GRKDYDVKKVLEVAEYIAN-AGID 257 (414)
T ss_pred CCceEEEEeeCceeccHHHHHHHHHhCCceEEeecccCCHHHHHHhc---------CccccCHHHHHHHHHHHHh-CCCC
Confidence 57888877788888888999999999888887775543 22333443 3 37888888 9999
Q ss_pred EEEEe
Q 026225 214 AVAVR 218 (241)
Q Consensus 214 VlvV~ 218 (241)
||+-|
T Consensus 258 vlIaP 262 (414)
T COG2100 258 VLIAP 262 (414)
T ss_pred EEEee
Confidence 98875
No 210
>PRK02929 L-arabinose isomerase; Provisional
Probab=24.44 E-value=5.6e+02 Score=24.50 Aligned_cols=43 Identities=9% Similarity=-0.055 Sum_probs=32.4
Q ss_pred HHHHHHHHcC----CcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeC
Q 026225 162 AIVEEARKQG----VALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRR 219 (241)
Q Consensus 162 ~I~~~a~~~~----~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~ 219 (241)
.|.+.+++.+ +|.||+-....+.-+.+ -.+++...+|||+...
T Consensus 59 ~i~~~~~~~~~~~~~dgvi~~m~TFs~a~~~---------------i~~~~~l~~PvL~~~~ 105 (499)
T PRK02929 59 EITAVCREANYDDNCAGVITWMHTFSPAKMW---------------IRGLSALQKPLLHLHT 105 (499)
T ss_pred HHHHHHHHccccCCCcEEEEccCCCchHHHH---------------HHHHHHcCCCEEEEec
Confidence 6667776666 99999988877665433 3457888999999976
No 211
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=23.79 E-value=1.5e+02 Score=27.07 Aligned_cols=26 Identities=19% Similarity=0.368 Sum_probs=18.1
Q ss_pred CCCchHHHHHHHH-HcCCcEEEEccCCC
Q 026225 156 GKEKGPAIVEEAR-KQGVALLVLGQKKR 182 (241)
Q Consensus 156 G~~~~~~I~~~a~-~~~~dllVmG~~~~ 182 (241)
|++.. .+++.++ +.++.+|.+-+.+.
T Consensus 103 GdDi~-~v~~~~~~~~~~~vi~v~t~gf 129 (406)
T cd01967 103 GDDIE-AVAKEASKELGIPVIPVNCEGF 129 (406)
T ss_pred ccCHH-HHHHHHHHhhCCCEEEEeCCCe
Confidence 88887 6666654 56788888876653
No 212
>TIGR00169 leuB 3-isopropylmalate dehydrogenase. This model will not find all isopropylmalate dehydrogenases; the enzyme from Sulfolobus sp. strain 7 is more similar to mitochondrial NAD-dependent isocitrate dehydrogenases than to other known isopropylmalate dehydrogenases and was omitted to improve the specificity of the model. It scores below the cutoff and below some enzymes known not to be isopropylmalate dehydrogenase.
Probab=23.74 E-value=2.1e+02 Score=26.03 Aligned_cols=26 Identities=15% Similarity=0.079 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhhccCCCEEEEEEE
Q 026225 82 NEAKGALQWSLTHTVQSQDKVVLVYV 107 (241)
Q Consensus 82 ~~s~~al~~A~~~a~~~~~~l~LlhV 107 (241)
..+++.+++|.++|.+.+.+|+++|=
T Consensus 163 ~~~eRI~r~AF~~A~~r~~~Vt~v~K 188 (349)
T TIGR00169 163 PEIERIARVAFEMARKRRKKVTSVDK 188 (349)
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEEC
Confidence 57889999999999887667777764
No 213
>PHA02031 putative DnaG-like primase
Probab=23.68 E-value=2.7e+02 Score=24.33 Aligned_cols=37 Identities=5% Similarity=0.032 Sum_probs=30.3
Q ss_pred CCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEE
Q 026225 71 GRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYV 107 (241)
Q Consensus 71 ~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV 107 (241)
.++|+++.|++.....|...|++++...+.++.++.+
T Consensus 206 ~~~Vil~fDgD~AG~~Aa~ra~~~l~~~~~~v~vv~l 242 (266)
T PHA02031 206 CPRVLIFLDGDPAGVDGSAGAMRRLRPLLIEGQVIIT 242 (266)
T ss_pred CCCEEEEeCCCHHHHHHHHHHHHHHHHcCCceEEEEC
Confidence 4899999999999999988899988777766655544
No 214
>PF02878 PGM_PMM_I: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; InterPro: IPR005844 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain I found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 3I3W_B 1WQA_C 1KFQ_B 1KFI_A 2Z0F_A 2FKM_X 3C04_A 1K2Y_X 1P5G_X 2H4L_X ....
Probab=23.45 E-value=1.8e+02 Score=22.09 Aligned_cols=40 Identities=8% Similarity=0.053 Sum_probs=33.2
Q ss_pred CCCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEc
Q 026225 70 SGRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIK 109 (241)
Q Consensus 70 ~~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~ 109 (241)
...+|+|+-|....++...+.++.-+...|.+|..+...+
T Consensus 39 ~~~~VvVg~D~R~~s~~~~~~~~~~l~~~G~~V~~~g~~~ 78 (137)
T PF02878_consen 39 NGSRVVVGRDTRPSSPMLAKALAAGLRANGVDVIDIGLVP 78 (137)
T ss_dssp TSSEEEEEE-SSTTHHHHHHHHHHHHHHTTEEEEEEEEB-
T ss_pred CCCeEEEEEcccCCHHHHHHHHHHHHhhcccccccccccC
Confidence 3579999999999999999999998888999998888544
No 215
>TIGR02089 TTC tartrate dehydrogenase. Tartrate dehydrogenase catalyzes the oxidation of both meso- and (+)-tartrate as well as a D-malate. These enzymes are closely related to the 3-isopropylmalate and isohomocitrate dehydrogenases found in TIGR00169 and TIGR02088, respectively.
Probab=23.44 E-value=1.7e+02 Score=26.58 Aligned_cols=27 Identities=0% Similarity=0.075 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhhccCCCEEEEEEEE
Q 026225 82 NEAKGALQWSLTHTVQSQDKVVLVYVI 108 (241)
Q Consensus 82 ~~s~~al~~A~~~a~~~~~~l~LlhV~ 108 (241)
..+++.+++|.++|.+...+|+++|=.
T Consensus 164 ~~~eRi~r~Af~~A~~rr~kVt~v~Ka 190 (352)
T TIGR02089 164 KGVERIMRFAFELAQKRRKHLTSATKS 190 (352)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 678899999999998776668888753
No 216
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=23.21 E-value=6e+02 Score=23.51 Aligned_cols=85 Identities=14% Similarity=0.038 Sum_probs=44.6
Q ss_pred CCCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccE
Q 026225 70 SGRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQF 149 (241)
Q Consensus 70 ~~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v 149 (241)
.++++.|..|. ..++-++..+. ..|.++..+.+..... .. .+++.+.+....++..
T Consensus 302 ~gkrv~i~g~~----~~~~~la~~L~-elGm~v~~~~~~~~~~---------------~~---~~~~~~~l~~~~~~~~- 357 (435)
T cd01974 302 HGKKFALYGDP----DFLIGLTSFLL-ELGMEPVHVLTGNGGK---------------RF---EKEMQALLDASPYGAG- 357 (435)
T ss_pred CCCEEEEEcCh----HHHHHHHHHHH-HCCCEEEEEEeCCCCH---------------HH---HHHHHHHHhhcCCCCC-
Confidence 46788887654 33555554444 6788886655422111 11 1122233332101122
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCcEEEEccC
Q 026225 150 EVAVVEGKEKGPAIVEEARKQGVALLVLGQK 180 (241)
Q Consensus 150 ~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~ 180 (241)
..+..+.+.. .+.+.++..++|+++=+++
T Consensus 358 -~~v~~~~d~~-e~~~~i~~~~pDliiG~s~ 386 (435)
T cd01974 358 -AKVYPGKDLW-HLRSLLFTEPVDLLIGNTY 386 (435)
T ss_pred -cEEEECCCHH-HHHHHHhhcCCCEEEECcc
Confidence 3333344444 8999999999999665443
No 217
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=23.05 E-value=4.4e+02 Score=22.84 Aligned_cols=32 Identities=19% Similarity=0.295 Sum_probs=25.3
Q ss_pred CccEEEEEEcCCCchHHHHHHHHH--cCCcEEEEc
Q 026225 146 EVQFEVAVVEGKEKGPAIVEEARK--QGVALLVLG 178 (241)
Q Consensus 146 ~v~v~~~~~~G~~~~~~I~~~a~~--~~~dllVmG 178 (241)
|+++..+.+.|++.. .|.+..+. .++|+||+.
T Consensus 34 G~~v~~~~~VgD~~~-~I~~~l~~a~~r~D~vI~t 67 (255)
T COG1058 34 GVDLARITTVGDNPD-RIVEALREASERADVVITT 67 (255)
T ss_pred CceEEEEEecCCCHH-HHHHHHHHHHhCCCEEEEC
Confidence 999999999999876 77766542 349999984
No 218
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=22.99 E-value=3.4e+02 Score=20.60 Aligned_cols=34 Identities=18% Similarity=0.031 Sum_probs=24.0
Q ss_pred EEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEc
Q 026225 73 KIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIK 109 (241)
Q Consensus 73 ~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~ 109 (241)
.++|++.+.-+|..++.++.+.. +.++..+|+..
T Consensus 3 d~~v~lSGG~DSs~ll~l~~~~~---~~~v~~v~~~~ 36 (154)
T cd01996 3 DCIIGVSGGKDSSYALYLLKEKY---GLNPLAVTVDN 36 (154)
T ss_pred CEEEECCCchhHHHHHHHHHHHh---CCceEEEEeCC
Confidence 48899999888888887775532 22667777743
No 219
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=22.89 E-value=2.7e+02 Score=19.29 Aligned_cols=47 Identities=19% Similarity=0.175 Sum_probs=27.4
Q ss_pred HHHHHHHHcCCcEEEEccCCC-----CchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeCC
Q 026225 162 AIVEEARKQGVALLVLGQKKR-----STTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRK 220 (241)
Q Consensus 162 ~I~~~a~~~~~dllVmG~~~~-----~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~ 220 (241)
.|.+.+++++++.|++|.-+. ...+. + .+.+.+-++.++||.++.+.
T Consensus 42 ~l~~~i~~~~~~~i~Ig~pg~v~g~~~~~~~-~-----------~l~~~l~~~~~~pv~~~nDa 93 (99)
T smart00732 42 RLKKLIKKYQPDLIVIGLPLNMNGTASRETE-E-----------AFAELLKERFNLPVVLVDER 93 (99)
T ss_pred HHHHHHHHhCCCEEEEeCCcCCCCCcCHHHH-H-----------HHHHHHHHhhCCcEEEEeCC
Confidence 555555556677777775432 11111 1 24455556778999998654
No 220
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=22.69 E-value=1.4e+02 Score=27.55 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=20.0
Q ss_pred CCCchHHHHHHHHHcCCcEEEEccCCC
Q 026225 156 GKEKGPAIVEEARKQGVALLVLGQKKR 182 (241)
Q Consensus 156 G~~~~~~I~~~a~~~~~dllVmG~~~~ 182 (241)
|++.. .+++.+++.++.++.+.+.+.
T Consensus 102 GdDi~-~v~~~~~~~~~~vi~v~t~gf 127 (427)
T cd01971 102 GDDVG-AVVSEFQEGGAPIVYLETGGF 127 (427)
T ss_pred hcCHH-HHHHHhhhcCCCEEEEECCCc
Confidence 88877 777777777888888877654
No 221
>PRK13055 putative lipid kinase; Reviewed
Probab=22.60 E-value=5.5e+02 Score=22.77 Aligned_cols=54 Identities=11% Similarity=0.109 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhhCCCccEEEEEEcCC-CchHHHHHHHHHcCCcEEEEccCCCCchhh
Q 026225 131 EFVHSLKNMCQQKRPEVQFEVAVVEGK-EKGPAIVEEARKQGVALLVLGQKKRSTTWR 187 (241)
Q Consensus 131 ~~l~~~~~~~~~~~~~v~v~~~~~~G~-~~~~~I~~~a~~~~~dllVmG~~~~~~~~~ 187 (241)
+.++++...+... +++++....... .....+.+.+...++|.||+. -|.+.+..
T Consensus 20 ~~~~~i~~~l~~~--g~~~~i~~t~~~~~~a~~~~~~~~~~~~d~vvv~-GGDGTl~e 74 (334)
T PRK13055 20 KNVADILDILEQA--GYETSAFQTTPEPNSAKNEAKRAAEAGFDLIIAA-GGDGTINE 74 (334)
T ss_pred HHHHHHHHHHHHc--CCeEEEEEeecCCccHHHHHHHHhhcCCCEEEEE-CCCCHHHH
Confidence 3445555656553 677776555432 233367776766778877764 34444444
No 222
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=22.40 E-value=3.8e+02 Score=21.87 Aligned_cols=44 Identities=5% Similarity=0.053 Sum_probs=29.1
Q ss_pred HHHHHHHHcCCcEEEEc----cCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCC-ceEEEEeCC
Q 026225 162 AIVEEARKQGVALLVLG----QKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNAD-CMAVAVRRK 220 (241)
Q Consensus 162 ~I~~~a~~~~~dllVmG----~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~-~pVlvV~~~ 220 (241)
..++.+.+..+|+++|. -...++. + ..+++..+.| ++++++-..
T Consensus 38 ~~~~~~~~~~pDlvLlDl~~~l~~~~g~--------------~-~i~~i~~~~p~~~iivlt~~ 86 (207)
T PRK15411 38 DLAIACDSLRPSVVFINEDCFIHDASNS--------------Q-RIKQIINQHPNTLFIVFMAI 86 (207)
T ss_pred HHHHHHhccCCCEEEEeCcccCCCCChH--------------H-HHHHHHHHCCCCeEEEEECC
Confidence 56677788889999999 3332222 2 5566666554 888888543
No 223
>PLN00118 isocitrate dehydrogenase (NAD+)
Probab=22.36 E-value=2.3e+02 Score=26.05 Aligned_cols=28 Identities=4% Similarity=0.054 Sum_probs=21.9
Q ss_pred CHHHHHHHHHHHHhhccCC-CEEEEEEEE
Q 026225 81 SNEAKGALQWSLTHTVQSQ-DKVVLVYVI 108 (241)
Q Consensus 81 s~~s~~al~~A~~~a~~~~-~~l~LlhV~ 108 (241)
...+++.+++|.++|.+.+ .+|+++|=.
T Consensus 183 r~~~eRIar~AF~~A~~r~~k~Vt~v~Ka 211 (372)
T PLN00118 183 RQASLRVAEYAFHYAKTHGRKRVSAIHKA 211 (372)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEEEECC
Confidence 3678899999999998875 458887753
No 224
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.35 E-value=4.2e+02 Score=24.83 Aligned_cols=55 Identities=15% Similarity=0.197 Sum_probs=36.8
Q ss_pred HHHHHHHHhhCCCccEEEEEEcCCCch--HHHHHHHHHcCCcEEEEccCCCCchhhHhh
Q 026225 134 HSLKNMCQQKRPEVQFEVAVVEGKEKG--PAIVEEARKQGVALLVLGQKKRSTTWRLFM 190 (241)
Q Consensus 134 ~~~~~~~~~~~~~v~v~~~~~~G~~~~--~~I~~~a~~~~~dllVmG~~~~~~~~~~l~ 190 (241)
+++++...+ .++++.....+-+|+. ..=++..++.++|+||+-+.+|.....-||
T Consensus 146 DQLkqnA~k--~~iP~ygsyte~dpv~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLf 202 (483)
T KOG0780|consen 146 DQLKQNATK--ARVPFYGSYTEADPVKIASEGVDRFKKENFDVIIVDTSGRHKQEASLF 202 (483)
T ss_pred HHHHHHhHh--hCCeeEecccccchHHHHHHHHHHHHhcCCcEEEEeCCCchhhhHHHH
Confidence 444444443 2688887777777643 122445567899999999999977776655
No 225
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=22.30 E-value=5.8e+02 Score=23.71 Aligned_cols=32 Identities=19% Similarity=0.334 Sum_probs=22.4
Q ss_pred CCCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEE
Q 026225 70 SGRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLV 105 (241)
Q Consensus 70 ~~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~Ll 105 (241)
.+++|+|.++.+ .++.++..++...|.++..+
T Consensus 316 ~gkrvai~~~~~----~~~~~~~~ll~elGm~v~~~ 347 (443)
T TIGR01862 316 QGKRVCLYIGGS----RLWHWIGSAEEDLGMEVVAV 347 (443)
T ss_pred cCCeEEEECCch----hHHHHHHHHHHHCCCEEEEe
Confidence 578899887764 34456655777788887766
No 226
>PRK08194 tartrate dehydrogenase; Provisional
Probab=22.29 E-value=1.9e+02 Score=26.36 Aligned_cols=28 Identities=7% Similarity=0.158 Sum_probs=22.3
Q ss_pred CHHHHHHHHHHHHhhccCCCEEEEEEEE
Q 026225 81 SNEAKGALQWSLTHTVQSQDKVVLVYVI 108 (241)
Q Consensus 81 s~~s~~al~~A~~~a~~~~~~l~LlhV~ 108 (241)
...+++.+++|.++|.+.+.+|+++|=.
T Consensus 160 r~~~eRI~r~Af~~A~~r~~~Vt~v~Ka 187 (352)
T PRK08194 160 RKGTERAMRYAFELAAKRRKHVTSATKS 187 (352)
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEeCc
Confidence 3678899999999998876668887753
No 227
>COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]
Probab=22.24 E-value=2.3e+02 Score=24.28 Aligned_cols=35 Identities=29% Similarity=0.436 Sum_probs=22.4
Q ss_pred CCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcC
Q 026225 71 GRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKP 110 (241)
Q Consensus 71 ~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~ 110 (241)
.+++.|++|..+..+ ++++ +...++.+..+-|..+
T Consensus 11 ~~~livaLD~~~~~~-~~~~----~~~~~~~~~~~Kvg~~ 45 (240)
T COG0284 11 SRRLIVALDVPTEEE-ALAF----VDKLGPTVDFVKVGKP 45 (240)
T ss_pred ccCeEEEECCCCHHH-HHHH----HHHhhccccEEEEchH
Confidence 455999999976554 4444 4444556677777554
No 228
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=22.24 E-value=4.9e+02 Score=22.07 Aligned_cols=57 Identities=19% Similarity=0.168 Sum_probs=35.2
Q ss_pred CccEEEEEEcCC-CchHHHHHHHH---HcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEe
Q 026225 146 EVQFEVAVVEGK-EKGPAIVEEAR---KQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVR 218 (241)
Q Consensus 146 ~v~v~~~~~~G~-~~~~~I~~~a~---~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~ 218 (241)
+.++.+....-. ...+.+.+.|+ ++++|+|||-+-|++..-+ +.+-+.+.+|||.-+
T Consensus 149 ~~~~~~a~asPy~~~~~~l~~Aa~~L~~~gadlIvLDCmGYt~~~r----------------~~~~~~~g~PVlLsr 209 (221)
T PF07302_consen 149 GNPVVVAAASPYEGDEEELAAAARELAEQGADLIVLDCMGYTQEMR----------------DIVQRALGKPVLLSR 209 (221)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCHHHH----------------HHHHHHhCCCEEeHH
Confidence 344555544411 11336777665 4689999999888765433 335556789988753
No 229
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=22.23 E-value=2.5e+02 Score=24.40 Aligned_cols=93 Identities=15% Similarity=0.037 Sum_probs=49.0
Q ss_pred hhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEEEEEcCCCchHHH-HHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCC
Q 026225 119 EESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEVAVVEGKEKGPAI-VEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRV 197 (241)
Q Consensus 119 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~~~~G~~~~~~I-~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~ 197 (241)
+...+...+..+...+.+++.+ | +.+.+++.|...+.+- +++|.+...+.||+-+-=.+.++ .++.- .++-
T Consensus 105 ~psE~n~y~Di~avye~Lr~~~-----g-~~~~Iil~G~SiGt~~tv~Lasr~~~~alVL~SPf~S~~r-v~~~~-~~~~ 176 (258)
T KOG1552|consen 105 KPSERNLYADIKAVYEWLRNRY-----G-SPERIILYGQSIGTVPTVDLASRYPLAAVVLHSPFTSGMR-VAFPD-TKTT 176 (258)
T ss_pred CcccccchhhHHHHHHHHHhhc-----C-CCceEEEEEecCCchhhhhHhhcCCcceEEEeccchhhhh-hhccC-cceE
Confidence 3333344444444434343332 5 7788888888776333 58888888899998653333332 22200 0000
Q ss_pred C-CC--CHHHHHHhcCCceEEEEeCC
Q 026225 198 P-GG--SFVEYCIQNADCMAVAVRRK 220 (241)
Q Consensus 198 ~-~G--sv~~~vi~~a~~pVlvV~~~ 220 (241)
+ +- ++ ..=+.+.+||||++.-.
T Consensus 177 ~~~d~f~~-i~kI~~i~~PVLiiHgt 201 (258)
T KOG1552|consen 177 YCFDAFPN-IEKISKITCPVLIIHGT 201 (258)
T ss_pred Eeeccccc-cCcceeccCCEEEEecc
Confidence 0 00 01 22245678999999744
No 230
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=22.22 E-value=5e+02 Score=23.67 Aligned_cols=59 Identities=10% Similarity=0.052 Sum_probs=41.1
Q ss_pred ccEEEEEEcCCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeCC
Q 026225 147 VQFEVAVVEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRK 220 (241)
Q Consensus 147 v~v~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~ 220 (241)
-+++.+-...+. ..-++.+++..+|.|.|.-.-. ....+ .+.+.+++..++||+++..-
T Consensus 25 ~~i~vv~~a~ng--~~a~~~~~~~~PDVi~ld~emp-~mdgl------------~~l~~im~~~p~pVimvssl 83 (350)
T COG2201 25 PDIEVVGTARNG--REAIDKVKKLKPDVITLDVEMP-VMDGL------------EALRKIMRLRPLPVIMVSSL 83 (350)
T ss_pred CCeEEEEecCCH--HHHHHHHHhcCCCEEEEecccc-cccHH------------HHHHHHhcCCCCcEEEEecc
Confidence 345544444443 2678888999999999986643 22322 25688999999999999753
No 231
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=22.20 E-value=3.9e+02 Score=20.93 Aligned_cols=82 Identities=13% Similarity=0.068 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhhccCCCEEEEEEEE--cCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEEEEEcCCCc--
Q 026225 84 AKGALQWSLTHTVQSQDKVVLVYVI--KPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEVAVVEGKEK-- 159 (241)
Q Consensus 84 s~~al~~A~~~a~~~~~~l~LlhV~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~~~~G~~~-- 159 (241)
+..-+..+++.|...+++...+|.- .... ....++..+...+.+..+.+.++++ |+.+-.+...+...
T Consensus 69 ~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~------~~~~~~~~~~~~~~l~~l~~~a~~~--gv~i~lE~~~~~~~~~ 140 (213)
T PF01261_consen 69 ALEYLKKAIDLAKRLGAKYIVVHSGRYPSGP------EDDTEENWERLAENLRELAEIAEEY--GVRIALENHPGPFSET 140 (213)
T ss_dssp HHHHHHHHHHHHHHHTBSEEEEECTTESSST------TSSHHHHHHHHHHHHHHHHHHHHHH--TSEEEEE-SSSSSSSE
T ss_pred HHHHHHHHHHHHHHhCCCceeecCccccccc------CCCHHHHHHHHHHHHHHHHhhhhhh--cceEEEecccCccccc
Confidence 3566778888888889988888854 1111 1123344555556677777777765 78877776665532
Q ss_pred h---HHHHHHHHHcCCc
Q 026225 160 G---PAIVEEARKQGVA 173 (241)
Q Consensus 160 ~---~~I~~~a~~~~~d 173 (241)
. +.+.+++++.+.+
T Consensus 141 ~~~~~~~~~~l~~~~~~ 157 (213)
T PF01261_consen 141 PFSVEEIYRLLEEVDSP 157 (213)
T ss_dssp ESSHHHHHHHHHHHTTT
T ss_pred hhhHHHHHHHHhhcCCC
Confidence 2 4788888876643
No 232
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=22.20 E-value=2.5e+02 Score=20.08 Aligned_cols=67 Identities=13% Similarity=0.175 Sum_probs=38.3
Q ss_pred HHHHHHHHHhhCCCccEEEEEEcCCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCc
Q 026225 133 VHSLKNMCQQKRPEVQFEVAVVEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADC 212 (241)
Q Consensus 133 l~~~~~~~~~~~~~v~v~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~ 212 (241)
++.+++.++++ |+++++.-.. .. .+.+.. .++|+|+++.+-+..... .+..+....+
T Consensus 16 ~~ki~~~~~~~--~~~~~v~~~~---~~-~~~~~~--~~~Diil~~Pqv~~~~~~---------------i~~~~~~~~~ 72 (96)
T cd05564 16 VKKMKKAAEKR--GIDAEIEAVP---ES-ELEEYI--DDADVVLLGPQVRYMLDE---------------VKKKAAEYGI 72 (96)
T ss_pred HHHHHHHHHHC--CCceEEEEec---HH-HHHHhc--CCCCEEEEChhHHHHHHH---------------HHHHhccCCC
Confidence 44566666654 6665443332 22 343433 478999998664433322 2333445689
Q ss_pred eEEEEeCCCc
Q 026225 213 MAVAVRRKSK 222 (241)
Q Consensus 213 pVlvV~~~~~ 222 (241)
||.+++....
T Consensus 73 pv~~I~~~~Y 82 (96)
T cd05564 73 PVAVIDMMDY 82 (96)
T ss_pred cEEEcChHhc
Confidence 9999987643
No 233
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=22.04 E-value=6.9e+02 Score=23.76 Aligned_cols=101 Identities=10% Similarity=0.025 Sum_probs=52.2
Q ss_pred CCEEEEeecCCHHHHH------HHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhC
Q 026225 71 GRKIMIVVDSSNEAKG------ALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKR 144 (241)
Q Consensus 71 ~~~ILVavD~s~~s~~------al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 144 (241)
.+++++.||--++++. |++..++.--....+++|+.|..|+.... ...++...+.+++..++...+..
T Consensus 254 ~~~lilgVDRLDytKGi~~rl~Afe~fL~~~Pe~~gkvvlvQia~psR~~v----~~Y~~l~~~v~~~vg~INg~fg~-- 327 (474)
T PRK10117 254 NVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDV----QAYQDIRHQLETEAGRINGKYGQ-- 327 (474)
T ss_pred CCeEEEEecccccccCHHHHHHHHHHHHHhChhhcCCEEEEEEcCCCCCcc----HHHHHHHHHHHHHHHHHHhccCC--
Confidence 5789999998766653 44444444444567899999987764211 12233334444444444333322
Q ss_pred CC-ccEEEEEEcCCCchHHHHHHHHHcCCcEEEEccCC
Q 026225 145 PE-VQFEVAVVEGKEKGPAIVEEARKQGVALLVLGQKK 181 (241)
Q Consensus 145 ~~-v~v~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~ 181 (241)
++ .++. .+-..-+.+ .++.+=+ -+|..++-+-.
T Consensus 328 ~~w~Pv~-y~~~~~~~~-~l~alyr--~ADv~lVTplR 361 (474)
T PRK10117 328 LGWTPLY-YLNQHFDRK-LLMKIFR--YSDVGLVTPLR 361 (474)
T ss_pred CCceeEE-EecCCCCHH-HHHHHHH--hccEEEecccc
Confidence 12 2222 222233444 4444433 46777775443
No 234
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=21.94 E-value=3.8e+02 Score=25.61 Aligned_cols=48 Identities=19% Similarity=0.311 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHhhCCCccEEEEEEcCCCchHHHHHHHHHcCCcEEEEccCC
Q 026225 129 GYEFVHSLKNMCQQKRPEVQFEVAVVEGKEKGPAIVEEARKQGVALLVLGQKK 181 (241)
Q Consensus 129 ~~~~l~~~~~~~~~~~~~v~v~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~ 181 (241)
..+++.++++.. +.-.|.+.++-+..++ .|.--+.+-++|+|++.-..
T Consensus 290 LaqlI~dLk~~~----~~~~I~VKlva~~~v~-~iaagvakA~AD~I~IdG~~ 337 (485)
T COG0069 290 LAQLIKDLKEAN----PWAKISVKLVAEHGVG-TIAAGVAKAGADVITIDGAD 337 (485)
T ss_pred HHHHHHHHHhcC----CCCeEEEEEecccchH-HHHhhhhhccCCEEEEcCCC
Confidence 334444454443 3345888888888776 66665778899999997544
No 235
>KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification]
Probab=21.56 E-value=8.3e+02 Score=24.53 Aligned_cols=40 Identities=23% Similarity=0.366 Sum_probs=25.7
Q ss_pred cEEEEccCCC---CchhhHhhhhcCC---------CCCCCCHHHHHHhcCCc
Q 026225 173 ALLVLGQKKR---STTWRLFMMWAGN---------RVPGGSFVEYCIQNADC 212 (241)
Q Consensus 173 dllVmG~~~~---~~~~~~l~~~~~~---------~~~~Gsv~~~vi~~a~~ 212 (241)
--+|+.+... +....+|+.|+++ +...|..+..++....-
T Consensus 320 pkVVlas~~~lE~Gfsrd~fl~w~~d~~N~illt~r~~~~tLa~el~~~~e~ 371 (764)
T KOG1135|consen 320 PKVVLASVPDLECGFSRDLFLEWASDPRNLILLTERGSPGTLARELISMPER 371 (764)
T ss_pred CeEEEeeccchhcchhHHHHHHHhcCCcceEEEecCCCchhHHHHHhhcccc
Confidence 3566555443 6667778888884 33347788888877643
No 236
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=21.45 E-value=98 Score=26.64 Aligned_cols=51 Identities=16% Similarity=0.220 Sum_probs=31.3
Q ss_pred hHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeCCCcCCCCeEEecc
Q 026225 160 GPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRKSKKLGGYLITTK 232 (241)
Q Consensus 160 ~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~~~~~~~~li~t~ 232 (241)
.+++.++++.+++++++.|..+.+.....+ |+ .+||.+++-+.|+|-+-+-
T Consensus 195 S~~V~dlIk~~~P~ivl~Ghihe~~~~e~l----------G~------------TlVVNPGsL~~G~yAvI~l 245 (255)
T PF14582_consen 195 SAAVRDLIKTYNPDIVLCGHIHESHGKESL----------GK------------TLVVNPGSLAEGDYAVIDL 245 (255)
T ss_dssp BHHHHHHHHHH--SEEEE-SSS-EE--EEE----------TT------------EEEEE--BGGGTEEEEEET
T ss_pred HHHHHHHHHhcCCcEEEecccccchhhHHh----------CC------------EEEecCcccccCceeEEEe
Confidence 458999999999999999987765544444 43 4777788766677765543
No 237
>COG1697 DNA topoisomerase VI, subunit A [DNA replication, recombination, and repair]
Probab=21.42 E-value=3.5e+02 Score=24.67 Aligned_cols=65 Identities=20% Similarity=0.165 Sum_probs=44.0
Q ss_pred EEEEcCCCchHHHHHHHHHcCCcEEEEccCCCC--chhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeCCCcCCCCeE
Q 026225 151 VAVVEGKEKGPAIVEEARKQGVALLVLGQKKRS--TTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRKSKKLGGYL 228 (241)
Q Consensus 151 ~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~~~--~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~~~~~~~~l 228 (241)
+.+++.+.+-..|++..-..+.+.|+++.+|.. ..++|+ ..+-+.+..||.++-+..+ .||-
T Consensus 186 VlvVEk~avf~rLv~e~~~~k~nailVt~KGqP~raTRrfl--------------krL~eel~lpv~vftDgDP--yG~~ 249 (356)
T COG1697 186 VLVVEKDAVFQRLVEEGFWEKENAILVTLKGQPDRATRRFL--------------KRLNEELDLPVYVFTDGDP--YGWY 249 (356)
T ss_pred EEEEechHHHHHHHHhhhhhhcCeEEEecCCCccHHHHHHH--------------HHHHHHhCCCEEEEecCCC--CEEE
Confidence 345555656667787777778889999988873 333333 4455555889999977755 6777
Q ss_pred Eec
Q 026225 229 ITT 231 (241)
Q Consensus 229 i~t 231 (241)
|..
T Consensus 250 Iy~ 252 (356)
T COG1697 250 IYS 252 (356)
T ss_pred EEE
Confidence 764
No 238
>TIGR00175 mito_nad_idh isocitrate dehydrogenase, NAD-dependent, mitochondrial type. The NADP-dependent IDH of Thermus aquaticus thermophilus strain HB8 resembles these NAD-dependent IDH, except for the residues involved in cofactor specificity, much more closely than it resembles other prokaryotic NADP-dependent IDH, including that of Thermus aquaticus strain YT1.
Probab=21.16 E-value=2.4e+02 Score=25.41 Aligned_cols=27 Identities=11% Similarity=0.161 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhhccCCC-EEEEEEEE
Q 026225 82 NEAKGALQWSLTHTVQSQD-KVVLVYVI 108 (241)
Q Consensus 82 ~~s~~al~~A~~~a~~~~~-~l~LlhV~ 108 (241)
..+++.+++|.++|.+.+. +|+++|=.
T Consensus 145 ~~~eRi~r~Af~~A~~r~~k~Vt~v~Ka 172 (333)
T TIGR00175 145 DKSERIARYAFEYARKNGRKKVTAVHKA 172 (333)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 6788999999999988754 58887753
No 239
>PRK08997 isocitrate dehydrogenase; Provisional
Probab=21.12 E-value=2.6e+02 Score=25.24 Aligned_cols=27 Identities=15% Similarity=0.147 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhhccCC-CEEEEEEEE
Q 026225 82 NEAKGALQWSLTHTVQSQ-DKVVLVYVI 108 (241)
Q Consensus 82 ~~s~~al~~A~~~a~~~~-~~l~LlhV~ 108 (241)
..+++.+++|.++|.+.+ .+|+++|=.
T Consensus 147 ~~~eRi~r~Af~~A~~r~~~~Vt~v~Ka 174 (334)
T PRK08997 147 KGAERIVRFAYELARKEGRKKVTAVHKA 174 (334)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence 678899999999998875 458887753
No 240
>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism]
Probab=20.94 E-value=1.7e+02 Score=26.51 Aligned_cols=29 Identities=10% Similarity=0.131 Sum_probs=24.4
Q ss_pred CHHHHHHHHHHHHhhccC-CCEEEEEEEEc
Q 026225 81 SNEAKGALQWSLTHTVQS-QDKVVLVYVIK 109 (241)
Q Consensus 81 s~~s~~al~~A~~~a~~~-~~~l~LlhV~~ 109 (241)
...+++.+++|.++|.+. ..+|+.+|=..
T Consensus 155 r~~~eRI~r~AFe~A~~R~~kkvTsv~KaN 184 (348)
T COG0473 155 RKGSERIARFAFELARKRGRKKVTSVHKAN 184 (348)
T ss_pred HHHHHHHHHHHHHHHHhhCCCceEEEehhh
Confidence 367899999999999998 68899998644
No 241
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=20.90 E-value=3.1e+02 Score=21.73 Aligned_cols=58 Identities=10% Similarity=0.226 Sum_probs=34.9
Q ss_pred CccEEEEEEcCCCchHHHHHHHHHc--CCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeCC
Q 026225 146 EVQFEVAVVEGKEKGPAIVEEARKQ--GVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRK 220 (241)
Q Consensus 146 ~v~v~~~~~~G~~~~~~I~~~a~~~--~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~ 220 (241)
|++++ +...+.-+ +|++.+.+. ++|-||+-.-..+...- .....+....+|++=|+-.
T Consensus 43 g~~v~--~~QSN~EG-elId~I~~a~~~~dgiiINpga~THtSi--------------Al~DAl~~~~~P~VEVHiS 102 (146)
T PRK05395 43 GVELE--FFQSNHEG-ELIDRIHEARDGADGIIINPGAYTHTSV--------------ALRDALAAVSIPVIEVHLS 102 (146)
T ss_pred CCEEE--EEeeCcHH-HHHHHHHhcccCCcEEEECchHHHHHHH--------------HHHHHHHcCCCCEEEEecC
Confidence 55544 44444223 788877654 68999997654433221 2234666779999988643
No 242
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=20.84 E-value=3.9e+02 Score=20.45 Aligned_cols=33 Identities=9% Similarity=0.188 Sum_probs=22.7
Q ss_pred EEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEc
Q 026225 73 KIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIK 109 (241)
Q Consensus 73 ~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~ 109 (241)
||+|.+.+..+|...|..+++..... .++|+..
T Consensus 1 ~i~vs~SGGKDS~v~l~l~~~~~~~~----~vv~~dt 33 (174)
T PF01507_consen 1 NIVVSFSGGKDSTVMLHLAREAGRKV----PVVFIDT 33 (174)
T ss_dssp SEEEE--SSHHHHHHHHHHHHHHTTC----EEEEEE-
T ss_pred CeEEEecCCHHHHHHHHHHHHhcCCC----cEEEEec
Confidence 57888999999998888888877553 4666643
No 243
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=20.69 E-value=3.4e+02 Score=21.32 Aligned_cols=57 Identities=9% Similarity=0.153 Sum_probs=33.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHc--CCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeCC
Q 026225 149 FEVAVVEGKEKGPAIVEEARKQ--GVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRK 220 (241)
Q Consensus 149 v~~~~~~G~~~~~~I~~~a~~~--~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~ 220 (241)
++..+...+.-+ +|++.+.+. ++|-||+-.-+.+...- .....+....+|++=|+-.
T Consensus 42 ~~v~~~QSN~EG-elId~i~~a~~~~dgiIINpga~THtSi--------------Al~DAl~~~~~P~vEVHiS 100 (141)
T TIGR01088 42 VELEFFQSNSEG-QLIDKIHEAEGQYDGIIINPGALTHTSV--------------ALRDALAAVSLPVVEVHLS 100 (141)
T ss_pred CEEEEEeeCcHH-HHHHHHHhccccCCEEEEcChHHhhhHH--------------HHHHHHHcCCCCEEEEEcC
Confidence 344444444323 788777654 57899997655433221 1233667779999988643
No 244
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=20.60 E-value=90 Score=29.11 Aligned_cols=19 Identities=37% Similarity=0.578 Sum_probs=17.8
Q ss_pred HHHHHHHHHcCCcEEEEcc
Q 026225 161 PAIVEEARKQGVALLVLGQ 179 (241)
Q Consensus 161 ~~I~~~a~~~~~dllVmG~ 179 (241)
+.|+++|++.++||+|+|.
T Consensus 53 ~~lv~fA~~~~idl~vVGP 71 (428)
T COG0151 53 EALVAFAKEKNVDLVVVGP 71 (428)
T ss_pred HHHHHHHHHcCCCEEEECC
Confidence 3999999999999999996
No 245
>PRK13057 putative lipid kinase; Reviewed
Probab=20.57 E-value=3e+02 Score=23.68 Aligned_cols=70 Identities=10% Similarity=0.108 Sum_probs=37.3
Q ss_pred HHHHHHHHHhhCCCccEEEEEEcCCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCc
Q 026225 133 VHSLKNMCQQKRPEVQFEVAVVEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADC 212 (241)
Q Consensus 133 l~~~~~~~~~~~~~v~v~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~ 212 (241)
++++.+.+... +++++....+.......+++.+ ..++|+||+. -|.+.+.. +++.++ ..+.
T Consensus 15 ~~~i~~~l~~~--g~~~~~~~t~~~~~a~~~~~~~-~~~~d~iiv~-GGDGTv~~--------------v~~~l~-~~~~ 75 (287)
T PRK13057 15 LAAARAALEAA--GLELVEPPAEDPDDLSEVIEAY-ADGVDLVIVG-GGDGTLNA--------------AAPALV-ETGL 75 (287)
T ss_pred HHHHHHHHHHc--CCeEEEEecCCHHHHHHHHHHH-HcCCCEEEEE-CchHHHHH--------------HHHHHh-cCCC
Confidence 34455555543 6766666555333333455543 3567777653 34344433 444443 3578
Q ss_pred eEEEEeCCC
Q 026225 213 MAVAVRRKS 221 (241)
Q Consensus 213 pVlvV~~~~ 221 (241)
|+-++|-..
T Consensus 76 ~lgiiP~GT 84 (287)
T PRK13057 76 PLGILPLGT 84 (287)
T ss_pred cEEEECCCC
Confidence 888887554
No 246
>PRK08185 hypothetical protein; Provisional
Probab=20.57 E-value=2.7e+02 Score=24.43 Aligned_cols=65 Identities=12% Similarity=-0.041 Sum_probs=43.6
Q ss_pred ccEEEEEEcCCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeCC
Q 026225 147 VQFEVAVVEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRK 220 (241)
Q Consensus 147 v~v~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~ 220 (241)
.-|-..-+.......++++.|++.+..+|+..+.+.-.....-+ ......+..++.+||.+==+.
T Consensus 13 yaV~AfN~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~---------~~~~~~~a~~~~vPV~lHLDH 77 (283)
T PRK08185 13 FAVGAFNVADSCFLRAVVEEAEANNAPAIIAIHPNELDFLGDNF---------FAYVRERAKRSPVPFVIHLDH 77 (283)
T ss_pred ceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEeCcchhhhccHHH---------HHHHHHHHHHCCCCEEEECCC
Confidence 33444444455555699999999999999998776422111223 667888899999997664333
No 247
>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism]
Probab=20.55 E-value=6.8e+02 Score=23.11 Aligned_cols=92 Identities=17% Similarity=0.147 Sum_probs=52.6
Q ss_pred CCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHH-HHHHhhCCCccE
Q 026225 71 GRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLK-NMCQQKRPEVQF 149 (241)
Q Consensus 71 ~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~v~v 149 (241)
-.++|+-+.+.-+|- .|..++-+.|.++..||...++.. .+.+.+....+. ..+. ..+.++
T Consensus 175 ~Gk~l~LlSGGIDSP----VA~~l~mkRG~~v~~v~f~~~p~~------------~~~a~~k~~~l~~~~~~--~~~~~~ 236 (383)
T COG0301 175 QGKVLLLLSGGIDSP----VAAWLMMKRGVEVIPVHFGNPPYT------------SEKAREKVVALALLRLT--SYGGKV 236 (383)
T ss_pred CCcEEEEEeCCCChH----HHHHHHHhcCCEEEEEEEcCCCCc------------hHHHHHHHHHHHhhhhc--ccCCce
Confidence 345666666655555 345566778999999999654431 223333333333 2222 236677
Q ss_pred EEEEEcCCCchHHHHH---------------------HHHHcCCcEEEEccC
Q 026225 150 EVAVVEGKEKGPAIVE---------------------EARKQGVALLVLGQK 180 (241)
Q Consensus 150 ~~~~~~G~~~~~~I~~---------------------~a~~~~~dllVmG~~ 180 (241)
...++.-.+..+.|.+ .|++.++..||-|-.
T Consensus 237 ~~~~v~f~~v~~~i~~~~~~~y~~v~~rR~M~riA~~iae~~g~~aIvtGEs 288 (383)
T COG0301 237 RLYVVPFTEVQEEILEKVPESYRCVLLKRMMYRIAEKLAEEFGAKAIVTGES 288 (383)
T ss_pred EEEEEchHHHHHHHHhhcCccceehHHHHHHHHHHHHHHHHhCCeEEEecCc
Confidence 7777775444434433 456677888887743
No 248
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=20.50 E-value=2.2e+02 Score=26.72 Aligned_cols=61 Identities=16% Similarity=0.149 Sum_probs=43.2
Q ss_pred hHHHHHHHHH--cCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeCCC---cCCCCeEEecc
Q 026225 160 GPAIVEEARK--QGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRKS---KKLGGYLITTK 232 (241)
Q Consensus 160 ~~~I~~~a~~--~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~~---~~~~~~li~t~ 232 (241)
.+.|++..+. .++|.||+.-.+.+.+.. . ...-.+.+++..|||+=|++. ++.|-+|||--
T Consensus 130 ~~~ll~~~~~~l~~~~~vVLSDY~KG~L~~-~-----------q~~I~~ar~~~~pVLvDPKg~Df~~Y~GAtLiTPN 195 (467)
T COG2870 130 ENKLLEKIKNALKSFDALVLSDYAKGVLTN-V-----------QKMIDLAREAGIPVLVDPKGKDFEKYRGATLITPN 195 (467)
T ss_pred HHHHHHHHHHHhhcCCEEEEeccccccchh-H-----------HHHHHHHHHcCCcEEECCCCcchhhhCCCeecCCC
Confidence 4467777666 689999999888776643 1 134457778899999987664 46677777753
No 249
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=20.49 E-value=1.6e+02 Score=27.77 Aligned_cols=26 Identities=8% Similarity=0.165 Sum_probs=19.6
Q ss_pred CCCchHHHHHHHH-HcCCcEEEEccCCC
Q 026225 156 GKEKGPAIVEEAR-KQGVALLVLGQKKR 182 (241)
Q Consensus 156 G~~~~~~I~~~a~-~~~~dllVmG~~~~ 182 (241)
|++.+ ++++.++ +.++.+|++-+.|-
T Consensus 113 GdDle-~va~~~~~~~gipVV~v~~~Gf 139 (457)
T CHL00073 113 KMDLE-GMAPKLEAEIGIPIVVARANGL 139 (457)
T ss_pred ccCHH-HHHHHHHHhhCCCEEEEeCCCc
Confidence 78877 7766655 77899998887664
No 250
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.48 E-value=2.3e+02 Score=24.08 Aligned_cols=24 Identities=21% Similarity=0.454 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHhhCCCccEEEEEEcCC
Q 026225 130 YEFVHSLKNMCQQKRPEVQFEVAVVEGK 157 (241)
Q Consensus 130 ~~~l~~~~~~~~~~~~~v~v~~~~~~G~ 157 (241)
.+.++++.+.+.+. +++..++-|+
T Consensus 25 ~~~l~~l~~~~~~~----~~D~lli~GD 48 (253)
T TIGR00619 25 KAFLDDLLEFAKAE----QIDALLVAGD 48 (253)
T ss_pred HHHHHHHHHHHHHc----CCCEEEECCc
Confidence 44566666666542 3555666554
No 251
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=20.45 E-value=6.7e+02 Score=23.01 Aligned_cols=35 Identities=11% Similarity=0.138 Sum_probs=27.1
Q ss_pred CCCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEE
Q 026225 70 SGRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVI 108 (241)
Q Consensus 70 ~~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~ 108 (241)
...+||+++.+.-+|.-|+-.+. +.|.+|..||+.
T Consensus 179 s~gkvlvllSGGiDSpVAa~ll~----krG~~V~~v~f~ 213 (381)
T PRK08384 179 TQGKVVALLSGGIDSPVAAFLMM----KRGVEVIPVHIY 213 (381)
T ss_pred CCCcEEEEEeCChHHHHHHHHHH----HcCCeEEEEEEE
Confidence 56899999999988885544433 358899999995
No 252
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=20.39 E-value=3.5e+02 Score=23.81 Aligned_cols=65 Identities=9% Similarity=0.038 Sum_probs=43.4
Q ss_pred ccEEEEEEcCCCchHHHHHHHHHcCCcEEEEccCCCCc-hhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeCC
Q 026225 147 VQFEVAVVEGKEKGPAIVEEARKQGVALLVLGQKKRST-TWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRK 220 (241)
Q Consensus 147 v~v~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~~~~-~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~ 220 (241)
.-+-..-+.......++++.|++.+..+|+.-+.+.-. ...-++ ...+..+.+++++||.+==+.
T Consensus 18 yaV~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~---------~~~~~~~a~~~~VPValHLDH 83 (284)
T PRK12737 18 YAVPAFNIHNLETLQVVVETAAELRSPVILAGTPGTFSYAGTDYI---------VAIAEVAARKYNIPLALHLDH 83 (284)
T ss_pred ceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCccHHhhCCHHHH---------HHHHHHHHHHCCCCEEEECCC
Confidence 44444555555566699999999999999987664311 111112 557888999999998765333
No 253
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=20.30 E-value=2e+02 Score=25.33 Aligned_cols=54 Identities=22% Similarity=0.345 Sum_probs=33.5
Q ss_pred HHHHHHHhhCCCccE-EEEEEcCCCchHHHHHHHHHcCCcEEEEccCCCCchhhHh
Q 026225 135 SLKNMCQQKRPEVQF-EVAVVEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLF 189 (241)
Q Consensus 135 ~~~~~~~~~~~~v~v-~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l 189 (241)
.+.+.+..+++++.+ ++....-..+.+++.++|++-+ -|||+|.+..+...+++
T Consensus 174 ~iv~~l~~~~~~~~v~~TIC~aT~~RQ~a~~~La~~vD-~miVVGg~~SsNT~rL~ 228 (281)
T PRK12360 174 DILNVIKLKSKELVFFNTICSATKKRQESAKELSKEVD-VMIVIGGKHSSNTQKLV 228 (281)
T ss_pred HHHHHHHHhCcccccCCCcchhhhhHHHHHHHHHHhCC-EEEEecCCCCccHHHHH
Confidence 333444444455544 3444445567778888887543 46788888878887765
No 254
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=20.29 E-value=2.8e+02 Score=21.30 Aligned_cols=32 Identities=13% Similarity=0.083 Sum_probs=23.6
Q ss_pred CccEEEEEEcCCCchHHHHHHHHH--cCCcEEEEc
Q 026225 146 EVQFEVAVVEGKEKGPAIVEEARK--QGVALLVLG 178 (241)
Q Consensus 146 ~v~v~~~~~~G~~~~~~I~~~a~~--~~~dllVmG 178 (241)
|+++....+.+++.+ .|.+..++ .++|+||..
T Consensus 40 G~~v~~~~~v~Dd~~-~i~~~l~~~~~~~DliItt 73 (144)
T TIGR00177 40 GFNVSRLGIVPDDPE-EIREILRKAVDEADVVLTT 73 (144)
T ss_pred CCeEEEEeecCCCHH-HHHHHHHHHHhCCCEEEEC
Confidence 788887777777765 67766554 378999985
No 255
>PF00180 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; InterPro: IPR024084 Isocitrate dehydrogenase (IDH) [, ] is an important enzyme of carbohydrate metabolism which catalyses the oxidative decarboxylation of isocitrate into alpha-ketoglutarate. IDH is either dependent on NAD+ (1.1.1.41 from EC) or on NADP+ (1.1.1.42 from EC). In eukaryotes there are at least three isozymes of IDH: two are located in the mitochondrial matrix (one NAD+-dependent, the other NADP+-dependent), while the third one (also NADP+-dependent) is cytoplasmic. In Escherichia coli the activity of a NADP+-dependent form of the enzyme is controlled by the phosphorylation of a serine residue; the phosphorylated form of IDH is completely inactivated. 3-isopropylmalate dehydrogenase (1.1.1.85 from EC) (IMDH) [, ] catalyses the third step in the biosynthesis of leucine in bacteria and fungi, the oxidative decarboxylation of 3-isopropylmalate into 2-oxo-4-methylvalerate. Tartrate dehydrogenase (1.1.1.93 from EC) [] catalyses the reduction of tartrate to oxaloglycolate. These enzymes are evolutionary related. To this family also belongs the enzyme tartrate dehydrogenase, which shows strong homology to prokaryotic isopropylmalate dehydrogenases and, to a lesser extent, isocitrate dehydrogenase []. This entry represents a structural domain found in all types of isocitrate dehydrogenase, and in isopropylmalate dehydrogenase and tartrate dehydrogenase. The crystal structure of Escherichia coli isopropylmalate dehydrogenase has been described []. ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1WAL_A 1CNZ_B 2D4V_C 1CM7_A 4AOY_D 3FMX_X 3FLK_C 1A05_A 1X0L_B 4F7I_D ....
Probab=20.20 E-value=2.3e+02 Score=25.64 Aligned_cols=78 Identities=13% Similarity=0.224 Sum_probs=48.1
Q ss_pred CHHHHHHHHHHHHhhccC-CCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEEEEEcCCCc
Q 026225 81 SNEAKGALQWSLTHTVQS-QDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEVAVVEGKEK 159 (241)
Q Consensus 81 s~~s~~al~~A~~~a~~~-~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~~~~G~~~ 159 (241)
.+.+++.+++|.++|.+. ..+|+++|=...-. ...-+.+.+.+..++.+|+++++..+++.
T Consensus 159 ~~~~eRi~r~AF~~A~~r~~k~Vt~v~KaNvl~---------------~~~lf~~~~~eva~~~yp~I~~~~~~vD~--- 220 (348)
T PF00180_consen 159 REGIERIARFAFEYARKRGRKKVTVVHKANVLK---------------STDLFREVFQEVAKQEYPDIEVEHMLVDA--- 220 (348)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSEEEEEESTTTST---------------THHHHHHHHHHHHHHTHTTSEEEEEEHHH---
T ss_pred cchhhHHHHHHHHHHHHhCCceEEEEeccchhH---------------HHHHHHHHHHHHHHhhcceeEeeeeechh---
Confidence 367899999999999997 67898888533211 11122333333444234799999888743
Q ss_pred hHHHHHHHH-HcCCcEEEEc
Q 026225 160 GPAIVEEAR-KQGVALLVLG 178 (241)
Q Consensus 160 ~~~I~~~a~-~~~~dllVmG 178 (241)
...+++. -.++|.||..
T Consensus 221 --~~~~Lv~~P~~fdViv~~ 238 (348)
T PF00180_consen 221 --AAMQLVKNPEQFDVIVTP 238 (348)
T ss_dssp --HHHHHHHSGGGESEEEEE
T ss_pred --hhheeecCCcceeEEeec
Confidence 3333333 3477877775
No 256
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=20.16 E-value=1.8e+02 Score=25.87 Aligned_cols=55 Identities=22% Similarity=0.276 Sum_probs=34.0
Q ss_pred HHHHHHHHhhCCCccE---EEEEEcCCCchHHHHHHHHHcCCcEEEEccCCCCchhhHh
Q 026225 134 HSLKNMCQQKRPEVQF---EVAVVEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLF 189 (241)
Q Consensus 134 ~~~~~~~~~~~~~v~v---~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l 189 (241)
+.+.+.+..+++++.+ ++....-..+.+++.++|++-+ -|||+|.+..+...+++
T Consensus 172 ~~i~~~l~~~~~~~~v~~~nTIC~aT~~RQ~a~~~La~~vD-~miVVGg~~SsNT~kL~ 229 (298)
T PRK01045 172 AEIIAALKERFPEIQGPPKDDICYATQNRQEAVKELAPQAD-LVIVVGSKNSSNSNRLR 229 (298)
T ss_pred HHHHHHHHHhCcCcccCCCCCcchhhHHHHHHHHHHHhhCC-EEEEECCCCCccHHHHH
Confidence 3344444444455554 2344445556778888888543 46788888878877765
Done!