Query 026225
Match_columns 241
No_of_seqs 149 out of 1815
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 08:32:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026225.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026225hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s3t_A Nucleotide-binding prot 99.9 1.6E-24 5.4E-29 168.6 13.8 138 69-218 3-146 (146)
2 1mjh_A Protein (ATP-binding do 99.9 4.8E-24 1.6E-28 169.0 15.2 139 70-220 4-160 (162)
3 2dum_A Hypothetical protein PH 99.9 5.9E-24 2E-28 170.0 15.0 149 69-232 3-166 (170)
4 3hgm_A Universal stress protei 99.9 3.6E-24 1.2E-28 166.5 11.0 136 70-217 1-147 (147)
5 1tq8_A Hypothetical protein RV 99.9 1.7E-23 5.7E-28 167.3 14.7 141 68-221 14-160 (163)
6 3fg9_A Protein of universal st 99.9 4.7E-23 1.6E-27 162.4 15.4 137 69-218 13-156 (156)
7 2z08_A Universal stress protei 99.9 1.7E-23 5.7E-28 161.6 11.3 134 70-218 1-137 (137)
8 3dlo_A Universal stress protei 99.9 2.4E-23 8.3E-28 165.0 12.0 132 68-218 21-155 (155)
9 3tnj_A Universal stress protei 99.9 5.7E-23 2E-27 160.6 13.2 136 69-220 4-148 (150)
10 2gm3_A Unknown protein; AT3G01 99.9 1.6E-22 5.6E-27 162.4 14.2 142 69-222 3-166 (175)
11 3idf_A USP-like protein; unive 99.9 1.1E-22 3.9E-27 156.8 11.9 133 71-218 1-138 (138)
12 3fdx_A Putative filament prote 99.9 1.9E-22 6.5E-27 156.2 11.1 136 72-218 2-143 (143)
13 1jmv_A USPA, universal stress 99.9 1.6E-21 5.6E-26 150.7 10.8 134 70-221 1-140 (141)
14 3loq_A Universal stress protei 99.8 2.1E-20 7.2E-25 161.8 12.8 150 69-232 20-178 (294)
15 3olq_A Universal stress protei 99.8 2.3E-20 7.9E-25 162.9 13.1 152 69-232 5-164 (319)
16 3cis_A Uncharacterized protein 99.8 6.1E-20 2.1E-24 160.1 15.5 152 69-232 17-179 (309)
17 3ab8_A Putative uncharacterize 99.8 4.9E-20 1.7E-24 157.2 11.9 147 72-232 1-162 (268)
18 1q77_A Hypothetical protein AQ 99.8 3.4E-20 1.2E-24 142.9 9.7 129 69-218 2-138 (138)
19 3mt0_A Uncharacterized protein 99.8 1.6E-19 5.4E-24 156.2 12.9 137 70-221 133-278 (290)
20 3mt0_A Uncharacterized protein 99.8 1.3E-19 4.6E-24 156.6 11.7 137 69-232 5-142 (290)
21 3loq_A Universal stress protei 99.8 6.9E-19 2.3E-23 152.3 14.5 126 69-222 168-293 (294)
22 3cis_A Uncharacterized protein 99.8 4.8E-19 1.6E-23 154.4 13.1 138 70-220 170-307 (309)
23 3olq_A Universal stress protei 99.8 1E-18 3.5E-23 152.4 12.9 138 70-222 155-308 (319)
24 3ab8_A Putative uncharacterize 99.7 1.2E-16 4E-21 136.2 10.5 116 70-218 153-268 (268)
25 3a2k_A TRNA(Ile)-lysidine synt 94.3 0.24 8.2E-06 45.1 10.1 105 70-189 17-137 (464)
26 1wy5_A TILS, hypothetical UPF0 94.3 0.69 2.4E-05 39.7 12.6 97 70-182 23-136 (317)
27 2iel_A Hypothetical protein TT 92.8 2.4 8.2E-05 32.0 13.0 128 72-217 2-133 (138)
28 3g40_A Na-K-CL cotransporter; 92.5 4.5 0.00015 34.5 14.3 124 71-222 20-149 (294)
29 4b4k_A N5-carboxyaminoimidazol 91.5 2.3 7.8E-05 33.7 10.5 64 146-226 49-115 (181)
30 1ni5_A Putative cell cycle pro 91.5 0.68 2.3E-05 41.8 8.5 104 70-190 12-127 (433)
31 4grd_A N5-CAIR mutase, phospho 90.1 1.9 6.5E-05 33.9 8.7 64 146-226 39-105 (173)
32 1xmp_A PURE, phosphoribosylami 88.7 3.9 0.00013 32.0 9.6 64 146-226 38-104 (170)
33 3trh_A Phosphoribosylaminoimid 88.5 3.2 0.00011 32.5 9.0 64 146-226 33-99 (169)
34 3kuu_A Phosphoribosylaminoimid 87.7 3.6 0.00012 32.4 8.8 64 146-226 39-105 (174)
35 2xry_A Deoxyribodipyrimidine p 87.2 3.7 0.00013 37.3 10.2 122 73-219 38-161 (482)
36 2ywx_A Phosphoribosylaminoimid 87.1 4.2 0.00014 31.5 8.8 65 136-219 18-82 (157)
37 3oow_A Phosphoribosylaminoimid 87.0 5.6 0.00019 31.0 9.6 64 146-226 32-98 (166)
38 1u11_A PURE (N5-carboxyaminoim 85.9 4.7 0.00016 31.9 8.7 64 146-226 48-114 (182)
39 3ors_A N5-carboxyaminoimidazol 85.9 5 0.00017 31.2 8.7 72 136-226 22-96 (163)
40 3g40_A Na-K-CL cotransporter; 84.8 2.3 8E-05 36.3 6.9 100 87-222 181-280 (294)
41 3rg8_A Phosphoribosylaminoimid 84.6 4.3 0.00015 31.5 7.8 69 136-223 21-93 (159)
42 1o4v_A Phosphoribosylaminoimid 83.3 6.6 0.00023 31.1 8.4 64 146-226 40-106 (183)
43 3lp6_A Phosphoribosylaminoimid 83.2 5 0.00017 31.5 7.7 61 146-223 34-97 (174)
44 3umv_A Deoxyribodipyrimidine p 82.8 5 0.00017 36.9 8.8 97 72-178 38-136 (506)
45 1zun_A Sulfate adenylyltransfe 79.3 7.8 0.00027 33.4 8.4 96 71-184 46-159 (325)
46 1k92_A Argininosuccinate synth 76.8 26 0.00087 31.7 11.3 37 70-110 9-45 (455)
47 3ih5_A Electron transfer flavo 76.4 9.2 0.00031 30.9 7.6 87 71-181 3-101 (217)
48 1o97_C Electron transferring f 75.0 21 0.0007 29.8 9.6 83 77-182 32-123 (264)
49 2wq7_A RE11660P; lyase-DNA com 73.0 17 0.00056 33.6 9.3 129 73-220 30-162 (543)
50 2j4d_A Cryptochrome 3, cryptoc 73.0 20 0.00067 33.0 9.7 129 72-220 40-175 (525)
51 1iv0_A Hypothetical protein; r 71.0 5.5 0.00019 28.1 4.3 50 160-220 40-94 (98)
52 1np7_A DNA photolyase; protein 70.9 19 0.00064 32.7 9.0 123 79-221 15-139 (489)
53 2hma_A Probable tRNA (5-methyl 69.6 32 0.0011 30.0 10.0 97 71-181 9-133 (376)
54 2nz2_A Argininosuccinate synth 69.4 28 0.00094 31.0 9.6 36 71-110 5-40 (413)
55 1sur_A PAPS reductase; assimil 69.3 35 0.0012 26.9 9.5 90 72-183 45-159 (215)
56 1efv_B Electron transfer flavo 66.9 53 0.0018 27.1 12.0 80 80-183 38-128 (255)
57 2oq2_A Phosphoadenosine phosph 66.9 44 0.0015 27.4 9.9 39 71-110 41-79 (261)
58 2der_A TRNA-specific 2-thiouri 65.5 58 0.002 28.5 10.8 100 68-181 14-142 (380)
59 1owl_A Photolyase, deoxyribodi 65.2 15 0.00053 33.2 7.2 119 79-220 12-130 (484)
60 3kcq_A Phosphoribosylglycinami 63.8 33 0.0011 27.6 8.2 96 71-192 8-103 (215)
61 2ywb_A GMP synthase [glutamine 61.8 77 0.0026 28.7 11.3 87 72-180 210-317 (503)
62 2j07_A Deoxyribodipyrimidine p 61.6 12 0.00042 33.3 5.7 82 83-180 15-96 (420)
63 4ds3_A Phosphoribosylglycinami 61.5 58 0.002 26.0 9.3 96 72-192 8-107 (209)
64 1efp_B ETF, protein (electron 61.3 67 0.0023 26.3 12.9 80 80-183 35-125 (252)
65 2wsi_A FAD synthetase; transfe 61.0 37 0.0013 28.7 8.5 93 72-182 54-168 (306)
66 3tvs_A Cryptochrome-1; circadi 59.8 10 0.00034 35.1 4.9 95 79-179 13-107 (538)
67 1kor_A Argininosuccinate synth 59.4 64 0.0022 28.5 10.0 36 72-110 1-36 (400)
68 2c5s_A THII, probable thiamine 59.3 46 0.0016 29.4 9.1 36 70-109 186-221 (413)
69 3fy4_A 6-4 photolyase; DNA rep 58.8 7.8 0.00027 35.9 4.0 100 72-180 5-112 (537)
70 3bl5_A Queuosine biosynthesis 58.7 62 0.0021 25.1 11.4 35 72-110 4-38 (219)
71 1u3d_A Cryptochrome 1 apoprote 58.4 1.1E+02 0.0037 27.8 11.9 124 73-220 13-139 (509)
72 2pg3_A Queuosine biosynthesis 57.9 68 0.0023 25.4 11.6 35 72-110 3-37 (232)
73 1vhx_A Putative holliday junct 57.3 6.1 0.00021 30.1 2.5 53 159-221 43-100 (150)
74 1nu0_A Hypothetical protein YQ 54.4 12 0.00042 28.0 3.8 53 158-220 40-97 (138)
75 3da8_A Probable 5'-phosphoribo 54.2 53 0.0018 26.4 7.9 97 70-193 11-111 (215)
76 2e0i_A 432AA long hypothetical 54.1 23 0.00077 31.8 6.2 112 85-220 16-127 (440)
77 3o1l_A Formyltetrahydrofolate 53.8 1E+02 0.0035 26.1 10.7 97 70-193 104-203 (302)
78 1vl2_A Argininosuccinate synth 52.1 1.3E+02 0.0044 26.8 10.7 38 69-110 12-49 (421)
79 3tqr_A Phosphoribosylglycinami 52.1 90 0.0031 25.0 9.5 96 71-192 5-104 (215)
80 1dnp_A DNA photolyase; DNA rep 50.5 17 0.00059 32.9 4.8 86 86-180 17-104 (471)
81 2dpl_A GMP synthetase, GMP syn 47.8 60 0.0021 27.3 7.6 36 72-110 21-56 (308)
82 3lou_A Formyltetrahydrofolate 45.3 1.4E+02 0.0047 25.1 11.4 97 70-193 94-193 (292)
83 1g63_A Epidermin modifying enz 45.3 19 0.00064 28.3 3.7 112 70-218 1-114 (181)
84 3n0v_A Formyltetrahydrofolate 44.4 1.4E+02 0.0048 25.0 11.5 97 70-193 89-188 (286)
85 2h31_A Multifunctional protein 44.3 65 0.0022 28.8 7.4 69 133-220 281-353 (425)
86 1qv9_A F420-dependent methylen 44.2 30 0.001 28.7 4.8 57 162-231 55-120 (283)
87 3qk7_A Transcriptional regulat 42.6 1.3E+02 0.0045 24.1 10.2 75 128-221 24-98 (294)
88 3tqi_A GMP synthase [glutamine 40.3 20 0.00067 33.0 3.5 36 72-110 231-266 (527)
89 3k32_A Uncharacterized protein 38.8 1.4E+02 0.0046 23.2 8.9 35 72-110 7-41 (203)
90 3qjg_A Epidermin biosynthesis 38.2 36 0.0012 26.5 4.3 115 69-218 3-117 (175)
91 2q5c_A NTRC family transcripti 37.8 1.4E+02 0.0049 23.2 9.9 82 91-218 86-167 (196)
92 3rjz_A N-type ATP pyrophosphat 35.9 1.8E+02 0.006 23.7 9.5 93 72-181 5-100 (237)
93 1xw8_A UPF0271 protein YBGL; N 35.8 1.5E+02 0.0052 24.4 7.9 135 76-232 28-175 (252)
94 2pju_A Propionate catabolism o 34.4 1.8E+02 0.0061 23.3 8.5 65 89-177 96-160 (225)
95 3nbm_A PTS system, lactose-spe 33.3 1.1E+02 0.0038 21.6 6.0 63 134-220 24-87 (108)
96 1vbk_A Hypothetical protein PH 33.3 2.1E+02 0.0073 23.9 9.0 88 70-181 178-265 (307)
97 3s40_A Diacylglycerol kinase; 33.3 1.2E+02 0.004 25.2 7.2 72 132-221 27-99 (304)
98 2q5c_A NTRC family transcripti 32.3 78 0.0027 24.7 5.5 22 200-221 59-80 (196)
99 3p9x_A Phosphoribosylglycinami 32.3 1.9E+02 0.0065 23.0 10.3 98 71-193 2-103 (211)
100 2pju_A Propionate catabolism o 31.9 1.6E+02 0.0053 23.7 7.3 53 146-221 36-92 (225)
101 2qv7_A Diacylglycerol kinase D 31.5 1.2E+02 0.004 25.6 6.9 73 132-221 43-116 (337)
102 3u1h_A 3-isopropylmalate dehyd 31.4 1.3E+02 0.0043 26.6 7.1 76 81-178 185-262 (390)
103 3obi_A Formyltetrahydrofolate 30.0 1.5E+02 0.005 24.8 7.1 98 70-193 88-188 (288)
104 2o2z_A Hypothetical protein; s 29.5 1.4E+02 0.0047 25.6 6.9 64 147-222 154-221 (323)
105 3vmk_A 3-isopropylmalate dehyd 29.4 1.6E+02 0.0053 25.9 7.3 77 81-178 178-255 (375)
106 3cg0_A Response regulator rece 29.1 1.4E+02 0.0047 20.4 7.7 47 162-220 45-91 (140)
107 2yxb_A Coenzyme B12-dependent 29.1 1.3E+02 0.0044 22.6 6.1 27 159-185 57-83 (161)
108 4f2d_A L-arabinose isomerase; 28.9 3E+02 0.01 25.0 9.4 85 116-220 18-106 (500)
109 3udu_A 3-isopropylmalate dehyd 28.6 1.4E+02 0.0049 25.9 6.9 76 82-178 167-243 (361)
110 3r8w_A 3-isopropylmalate dehyd 28.5 1.5E+02 0.0052 26.2 7.1 77 81-178 206-283 (405)
111 2ejb_A Probable aromatic acid 28.3 78 0.0027 24.8 4.8 34 72-106 2-35 (189)
112 1meo_A Phosophoribosylglycinam 27.6 2.3E+02 0.0077 22.4 9.6 94 72-190 1-98 (209)
113 3zqu_A Probable aromatic acid 27.4 81 0.0028 25.2 4.8 35 71-106 4-38 (209)
114 1ccw_A Protein (glutamate muta 27.2 1.3E+02 0.0046 21.8 5.7 47 160-217 43-91 (137)
115 3flk_A Tartrate dehydrogenase/ 26.9 1.5E+02 0.0052 25.8 6.8 78 81-178 165-244 (364)
116 2ppv_A Uncharacterized protein 26.8 1.2E+02 0.0041 26.1 6.0 63 147-221 153-219 (332)
117 3o1i_D Periplasmic protein TOR 26.1 1.8E+02 0.0062 23.1 7.0 73 129-219 20-95 (304)
118 3qi7_A Putative transcriptiona 26.0 1.6E+02 0.0056 25.7 6.8 92 73-180 14-120 (371)
119 1sbz_A Probable aromatic acid 25.9 93 0.0032 24.6 4.9 35 72-106 1-35 (197)
120 2l69_A Rossmann 2X3 fold prote 25.4 36 0.0012 23.9 2.0 32 147-178 51-82 (134)
121 3fni_A Putative diflavin flavo 25.2 1.5E+02 0.005 22.0 5.7 35 146-183 33-68 (159)
122 2bon_A Lipid kinase; DAG kinas 24.2 2.2E+02 0.0076 23.8 7.4 70 135-221 48-120 (332)
123 1y80_A Predicted cobalamin bin 23.9 1.8E+02 0.006 22.6 6.2 27 157-183 125-151 (210)
124 1w0d_A 3-isopropylmalate dehyd 23.3 1.8E+02 0.006 25.1 6.5 77 81-178 153-231 (337)
125 2l69_A Rossmann 2X3 fold prote 23.2 91 0.0031 21.8 3.7 48 131-181 13-60 (134)
126 3blx_B Isocitrate dehydrogenas 23.1 2E+02 0.0069 24.9 6.8 77 81-178 162-243 (354)
127 3nrb_A Formyltetrahydrofolate 23.1 1.5E+02 0.005 24.8 5.8 98 70-193 87-187 (287)
128 3hly_A Flavodoxin-like domain; 23.0 1.5E+02 0.0052 21.9 5.5 46 132-182 17-62 (161)
129 1gpm_A GMP synthetase, XMP ami 23.0 2.7E+02 0.0094 25.1 8.1 36 72-110 228-263 (525)
130 3m9w_A D-xylose-binding peripl 22.7 3E+02 0.01 22.0 10.6 75 131-222 19-94 (313)
131 3rot_A ABC sugar transporter, 22.5 2.9E+02 0.01 21.9 8.8 77 129-222 18-97 (297)
132 3k9c_A Transcriptional regulat 22.4 2.9E+02 0.01 21.8 11.9 83 129-231 26-108 (289)
133 1x0l_A Homoisocitrate dehydrog 22.3 2E+02 0.007 24.6 6.7 78 81-178 143-222 (333)
134 3l49_A ABC sugar (ribose) tran 22.3 2.9E+02 0.0098 21.7 8.1 76 130-222 21-97 (291)
135 3dbi_A Sugar-binding transcrip 22.2 3.2E+02 0.011 22.2 8.8 76 129-222 78-154 (338)
136 1v6t_A Hypothetical UPF0271 pr 22.2 3.3E+02 0.011 22.4 8.1 139 72-232 29-180 (255)
137 3inp_A D-ribulose-phosphate 3- 22.1 1.4E+02 0.0048 24.4 5.4 47 129-179 178-224 (246)
138 3auf_A Glycinamide ribonucleot 21.6 3.1E+02 0.011 21.9 10.3 33 160-192 90-122 (229)
139 3u7r_A NADPH-dependent FMN red 21.4 1.4E+02 0.0047 23.2 5.0 39 70-109 1-42 (190)
140 2ywr_A Phosphoribosylglycinami 21.3 3E+02 0.01 21.6 10.2 30 161-190 70-99 (216)
141 3h5i_A Response regulator/sens 21.2 2.1E+02 0.0071 19.7 7.6 48 162-221 40-88 (140)
142 1vlc_A 3-isopropylmalate dehyd 20.9 2.1E+02 0.0073 24.9 6.5 76 81-178 173-250 (366)
143 3av3_A Phosphoribosylglycinami 20.9 3.1E+02 0.01 21.5 9.6 33 160-192 71-103 (212)
144 8abp_A L-arabinose-binding pro 20.8 3.2E+02 0.011 21.6 9.7 73 129-220 17-91 (306)
No 1
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=99.92 E-value=1.6e-24 Score=168.62 Aligned_cols=138 Identities=20% Similarity=0.326 Sum_probs=118.4
Q ss_pred CCCCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCC----CchhhHhhhhHHHHHHHHHHHHHHHhhC
Q 026225 69 SSGRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQA----TGEESGKQRAPRGYEFVHSLKNMCQQKR 144 (241)
Q Consensus 69 ~~~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 144 (241)
.|+++|||++|+|+.+..|++||+.+|...+++|+++||+++...... ...+..+...+.+++.++.+.+.+...
T Consensus 3 ~~~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~- 81 (146)
T 3s3t_A 3 ARYTNILVPVDSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHTPALDPVLSELLDAEAAHAKDAMRQRQQFVATT- 81 (146)
T ss_dssp CCCCEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-
T ss_pred CccceEEEEcCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 578999999999999999999999999999999999999987543221 123344556667777888888877664
Q ss_pred CCc-cEEEEEEcCCCchHHHHH-HHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEe
Q 026225 145 PEV-QFEVAVVEGKEKGPAIVE-EARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVR 218 (241)
Q Consensus 145 ~~v-~v~~~~~~G~~~~~~I~~-~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~ 218 (241)
|+ ++++.+..|++.. .|++ +|++.++||||||+++++.+.++++ ||++++|+++++||||+||
T Consensus 82 -g~~~~~~~~~~g~~~~-~I~~~~a~~~~~dliV~G~~~~~~~~~~~~---------Gs~~~~vl~~~~~pVlvV~ 146 (146)
T 3s3t_A 82 -SAPNLKTEISYGIPKH-TIEDYAKQHPEIDLIVLGATGTNSPHRVAV---------GSTTSYVVDHAPCNVIVIR 146 (146)
T ss_dssp -SCCCCEEEEEEECHHH-HHHHHHHHSTTCCEEEEESCCSSCTTTCSS---------CHHHHHHHHHCSSEEEEEC
T ss_pred -CCcceEEEEecCChHH-HHHHHHHhhcCCCEEEECCCCCCCcceEEE---------cchHHHHhccCCCCEEEeC
Confidence 78 8999999998655 9999 9999999999999999999999888 9999999999999999996
No 2
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=99.92 E-value=4.8e-24 Score=169.02 Aligned_cols=139 Identities=20% Similarity=0.289 Sum_probs=115.9
Q ss_pred CCCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCC-----CC-CCC-------Cc-----hhhHhhhhHHHHH
Q 026225 70 SGRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPS-----NN-KQA-------TG-----EESGKQRAPRGYE 131 (241)
Q Consensus 70 ~~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~-----~~-~~~-------~~-----~~~~~~~~~~~~~ 131 (241)
|+++||||+|+|+.+..|++||+.+|...+++|+++||+++. .. ... .. .+..+...+.+++
T Consensus 4 ~~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (162)
T 1mjh_A 4 MYKKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKN 83 (162)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHH
T ss_pred ccceEEEEeCCCHHHHHHHHHHHHHHhhcCCeEEEEEEecCccccccccccccccccccccchhhhHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999998854 11 010 11 1234445566777
Q ss_pred HHHHHHHHHHhhCCCccEEEEEEcCCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCC
Q 026225 132 FVHSLKNMCQQKRPEVQFEVAVVEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNAD 211 (241)
Q Consensus 132 ~l~~~~~~~~~~~~~v~v~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~ 211 (241)
.++.+.+.+.. .|+++++.+..|++. +.|+++|++.++||||||+++++.+.++++ ||++++|+++++
T Consensus 84 ~l~~~~~~~~~--~g~~~~~~v~~G~~~-~~I~~~a~~~~~dlIV~G~~g~~~~~~~~~---------GSv~~~vl~~~~ 151 (162)
T 1mjh_A 84 KMENIKKELED--VGFKVKDIIVVGIPH-EEIVKIAEDEGVDIIIMGSHGKTNLKEILL---------GSVTENVIKKSN 151 (162)
T ss_dssp HHHHHHHHHHH--TTCEEEEEEEEECHH-HHHHHHHHHTTCSEEEEESCCSSCCTTCSS---------CHHHHHHHHHCC
T ss_pred HHHHHHHHHHH--cCCceEEEEcCCCHH-HHHHHHHHHcCCCEEEEcCCCCCCccceEe---------cchHHHHHHhCC
Confidence 78888777765 389999999999865 499999999999999999999999999888 999999999999
Q ss_pred ceEEEEeCC
Q 026225 212 CMAVAVRRK 220 (241)
Q Consensus 212 ~pVlvV~~~ 220 (241)
||||+||+.
T Consensus 152 ~pVlvv~~~ 160 (162)
T 1mjh_A 152 KPVLVVKRK 160 (162)
T ss_dssp SCEEEECCC
T ss_pred CCEEEEeCC
Confidence 999999864
No 3
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=99.91 E-value=5.9e-24 Score=169.95 Aligned_cols=149 Identities=17% Similarity=0.145 Sum_probs=116.4
Q ss_pred CCCCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCC-------------CchhhHhhhhHHHHHHHHH
Q 026225 69 SSGRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQA-------------TGEESGKQRAPRGYEFVHS 135 (241)
Q Consensus 69 ~~~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~-------------~~~~~~~~~~~~~~~~l~~ 135 (241)
.|+++||||+|+++.+..|++||+.+|...+++|++|||+++...... ..++..+...+.+++.++.
T Consensus 3 ~m~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 82 (170)
T 2dum_A 3 FMFRKVLFPTDFSEGAYRAVEVFEKRNKMEVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEEASRKLQE 82 (170)
T ss_dssp -CCSEEEEECCSSHHHHHHHHHHHHHCCSCCSEEEEEEEEETTGGGCCC------------CCTTSHHHHHHHHHHHHHH
T ss_pred cccceEEEEecCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccccccccccHHHHHHHHHHHHHHHHHH
Confidence 368999999999999999999999999999999999999875431100 1123344556667778888
Q ss_pred HHHHHHhhCCCccEEE--EEEcCCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCce
Q 026225 136 LKNMCQQKRPEVQFEV--AVVEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCM 213 (241)
Q Consensus 136 ~~~~~~~~~~~v~v~~--~~~~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~p 213 (241)
+.+.+... |+++++ .+..|++. +.|+++|+++++||||||+++++.+.++++ ||++++|+++++||
T Consensus 83 ~~~~~~~~--g~~~~~~~~~~~g~~~-~~I~~~a~~~~~DlIV~G~~g~~~~~~~~~---------Gsv~~~vl~~~~~P 150 (170)
T 2dum_A 83 KAEEVKRA--FRAKNVRTIIRFGIPW-DEIVKVAEEENVSLIILPSRGKLSLSHEFL---------GSTVMRVLRKTKKP 150 (170)
T ss_dssp HHHHHHHH--TTCSEEEEEEEEECHH-HHHHHHHHHTTCSEEEEESCCCCC--TTCC---------CHHHHHHHHHCSSC
T ss_pred HHHHHHHc--CCceeeeeEEecCChH-HHHHHHHHHcCCCEEEECCCCCCcccccee---------chHHHHHHHhCCCC
Confidence 88777664 788877 88889865 499999999999999999999999999888 99999999999999
Q ss_pred EEEEeCCCcCCCCeEEecc
Q 026225 214 AVAVRRKSKKLGGYLITTK 232 (241)
Q Consensus 214 VlvV~~~~~~~~~~li~t~ 232 (241)
||+||...... ++.|+
T Consensus 151 Vlvv~~~~~~~---~~~~~ 166 (170)
T 2dum_A 151 VLIIKEVDENE---LAKTK 166 (170)
T ss_dssp EEEECCCCCC---------
T ss_pred EEEEccCCccc---cccCC
Confidence 99999776533 55554
No 4
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=99.91 E-value=3.6e-24 Score=166.54 Aligned_cols=136 Identities=21% Similarity=0.232 Sum_probs=114.8
Q ss_pred CCCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCC----CC----CCCchhhHhhhhHHHHHHHHHHHHHHH
Q 026225 70 SGRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSN----NK----QATGEESGKQRAPRGYEFVHSLKNMCQ 141 (241)
Q Consensus 70 ~~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~----~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~ 141 (241)
|+++||||+|+|+.+..|++||+.+|...+++|+++||.++.. .. ....+...+...+.+++.++.+.+.+.
T Consensus 1 M~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 80 (147)
T 3hgm_A 1 MFNRIMVPVDGSKGAVKALEKGVGLQQLTGAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAKTRAT 80 (147)
T ss_dssp CCSEEEEECCSBHHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999998642 00 001122345556777788888888887
Q ss_pred hhCCCccE---EEEEEcCCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEE
Q 026225 142 QKRPEVQF---EVAVVEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAV 217 (241)
Q Consensus 142 ~~~~~v~v---~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV 217 (241)
.. |+++ +..+..|++. +.|++++++.++||||||+++++.+.++++ ||++++|+++++||||+|
T Consensus 81 ~~--g~~~~~~~~~~~~g~~~-~~I~~~a~~~~~dliV~G~~~~~~~~~~~~---------Gs~~~~vl~~~~~pVlvV 147 (147)
T 3hgm_A 81 EL--GVPADKVRAFVKGGRPS-RTIVRFARKRECDLVVIGAQGTNGDKSLLL---------GSVAQRVAGSAHCPVLVV 147 (147)
T ss_dssp HT--TCCGGGEEEEEEESCHH-HHHHHHHHHTTCSEEEECSSCTTCCSCCCC---------CHHHHHHHHHCSSCEEEC
T ss_pred hc--CCCccceEEEEecCCHH-HHHHHHHHHhCCCEEEEeCCCCccccceee---------ccHHHHHHhhCCCCEEEC
Confidence 64 7766 8999999865 499999999999999999999999999888 999999999999999986
No 5
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=99.91 E-value=1.7e-23 Score=167.29 Aligned_cols=141 Identities=18% Similarity=0.233 Sum_probs=111.4
Q ss_pred CCCCCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEE--EEEcCCCC-CC--CCchhhHhhhhHHHHHHHHHHHHHHHh
Q 026225 68 VSSGRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLV--YVIKPSNN-KQ--ATGEESGKQRAPRGYEFVHSLKNMCQQ 142 (241)
Q Consensus 68 ~~~~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~Ll--hV~~~~~~-~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~ 142 (241)
..++++||||+|+|+.+..|++||+.+|. .+++|++| ||+++... .. ....++.+...+.+++.++.+.+.+..
T Consensus 14 ~~~~~~ILv~vD~s~~s~~al~~A~~lA~-~~a~l~ll~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 92 (163)
T 1tq8_A 14 LSAYKTVVVGTDGSDSSMRAVDRAAQIAG-ADAKLIIASAYLPQHEDARAADILKDESYKVTGTAPIYEILHDAKERAHN 92 (163)
T ss_dssp CCCCCEEEEECCSSHHHHHHHHHHHHHHT-TTSEEEEEEECCC--------------------CCTHHHHHHHHHHHHHT
T ss_pred cccCCEEEEEcCCCHHHHHHHHHHHHHhC-CCCEEEEEEeeeccCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999 99999999 88765431 01 001223334556677788888887765
Q ss_pred hCCCcc-EEEEEEcCCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeCCC
Q 026225 143 KRPEVQ-FEVAVVEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRKS 221 (241)
Q Consensus 143 ~~~~v~-v~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~~ 221 (241)
.|++ +++.+..|++. +.|+++|++.++||||||+++++.+.++++ ||++++|+++++||||+||+..
T Consensus 93 --~gv~~v~~~v~~G~~~-~~I~~~a~~~~~DLIV~G~~g~~~~~~~~l---------GSva~~vl~~a~~PVlvV~~~~ 160 (163)
T 1tq8_A 93 --AGAKNVEERPIVGAPV-DALVNLADEEKADLLVVGNVGLSTIAGRLL---------GSVPANVSRRAKVDVLIVHTTE 160 (163)
T ss_dssp --TTCCEEEEEEECSSHH-HHHHHHHHHTTCSEEEEECCCCCSHHHHHT---------BBHHHHHHHHTTCEEEEECCC-
T ss_pred --cCCCeEEEEEecCCHH-HHHHHHHHhcCCCEEEECCCCCCcccceee---------ccHHHHHHHhCCCCEEEEeCCC
Confidence 3888 99999999864 599999999999999999999999999999 9999999999999999998653
No 6
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=99.90 E-value=4.7e-23 Score=162.44 Aligned_cols=137 Identities=18% Similarity=0.219 Sum_probs=115.9
Q ss_pred CCCCEEEEeec--CCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCC--CCchhhHhhhhHHHHHHHHHHHHHHHhhC
Q 026225 69 SSGRKIMIVVD--SSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQ--ATGEESGKQRAPRGYEFVHSLKNMCQQKR 144 (241)
Q Consensus 69 ~~~~~ILVavD--~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 144 (241)
.++++||||+| +|+.+..|++||+.+|...+++|+++||+++..... ....+..+...+.+++.++.+.+.+...
T Consensus 13 ~~~~~ILv~vD~~~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~- 91 (156)
T 3fg9_A 13 LVYRRILLTVDEDDNTSSERAFRYATTLAHDYDVPLGICSVLESEDINIFDSLTPSKIQAKRKHVEDVVAEYVQLAEQR- 91 (156)
T ss_dssp CCCC-EEEECCSCCCHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred ccCceEEEEECCCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEeCCCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHc-
Confidence 57999999999 999999999999999999999999999998754221 1234455566777888888888888765
Q ss_pred CCc-cEEEEEEc-CCCchHHHHHH-HHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEe
Q 026225 145 PEV-QFEVAVVE-GKEKGPAIVEE-ARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVR 218 (241)
Q Consensus 145 ~~v-~v~~~~~~-G~~~~~~I~~~-a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~ 218 (241)
|+ .+++.+.. |++.. .|+++ |++.++||||||+++++.+.. ++ ||++++|+++++||||+||
T Consensus 92 -g~~~~~~~v~~~g~~~~-~I~~~~a~~~~~DlIV~G~~g~~~~~~-~~---------Gs~~~~vl~~a~~PVlvV~ 156 (156)
T 3fg9_A 92 -GVNQVEPLVYEGGDVDD-VILEQVIPEFKPDLLVTGADTEFPHSK-IA---------GAIGPRLARKAPISVIVVR 156 (156)
T ss_dssp -TCSSEEEEEEECSCHHH-HHHHTHHHHHCCSEEEEETTCCCTTSS-SC---------SCHHHHHHHHCSSEEEEEC
T ss_pred -CCCceEEEEEeCCCHHH-HHHHHHHHhcCCCEEEECCCCCCccce-ee---------cchHHHHHHhCCCCEEEeC
Confidence 78 58999999 87654 99999 999999999999999988875 66 9999999999999999996
No 7
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=99.90 E-value=1.7e-23 Score=161.59 Aligned_cols=134 Identities=22% Similarity=0.322 Sum_probs=104.8
Q ss_pred CCCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCC--CchhhHhhhhHHHHHHHHHHHHHHHhhCCCc
Q 026225 70 SGRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQA--TGEESGKQRAPRGYEFVHSLKNMCQQKRPEV 147 (241)
Q Consensus 70 ~~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v 147 (241)
|+++||||+|+|+.+..|++||+.+|...+++|+++||.++...... ..++..+...+.+++.++.+.+. .|+
T Consensus 1 m~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~ 75 (137)
T 2z08_A 1 MFKTILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYEPVPDYLGEPFFEEALRRRLERAEGVLEEARAL-----TGV 75 (137)
T ss_dssp CCSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEECC--------------CHHHHHHHHHHHHHHHH-----HCC
T ss_pred CcceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCCCccccccchHHHHHHHHHHHHHHHHHHHHH-----cCC
Confidence 68999999999999999999999999999999999999985321110 01122233344455555554443 267
Q ss_pred -cEEEEEEcCCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEe
Q 026225 148 -QFEVAVVEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVR 218 (241)
Q Consensus 148 -~v~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~ 218 (241)
++++.+..|++. +.|+++++++++||||||+++++.+.++++ ||++++|+++++||||+||
T Consensus 76 ~~~~~~~~~g~~~-~~I~~~a~~~~~dliV~G~~~~~~~~~~~~---------Gs~~~~vl~~~~~pVlvv~ 137 (137)
T 2z08_A 76 PKEDALLLEGVPA-EAILQAARAEKADLIVMGTRGLGALGSLFL---------GSQSQRVVAEAPCPVLLVR 137 (137)
T ss_dssp CGGGEEEEESSHH-HHHHHHHHHTTCSEEEEESSCTTCCSCSSS---------CHHHHHHHHHCSSCEEEEC
T ss_pred CccEEEEEecCHH-HHHHHHHHHcCCCEEEECCCCCchhhhhhh---------ccHHHHHHhcCCCCEEEeC
Confidence 777788889865 599999999999999999999999988888 9999999999999999996
No 8
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=99.90 E-value=2.4e-23 Score=164.99 Aligned_cols=132 Identities=19% Similarity=0.191 Sum_probs=110.9
Q ss_pred CCCCCEEEEeecC-CHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCC
Q 026225 68 VSSGRKIMIVVDS-SNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPE 146 (241)
Q Consensus 68 ~~~~~~ILVavD~-s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 146 (241)
+.|+++||||+|+ |+.+..|++||+.+|...+++|++|||.++... ..+...+.+++.++.+.+.+... +
T Consensus 21 ~mm~~~ILv~vD~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~--g 91 (155)
T 3dlo_A 21 GMIYMPIVVAVDKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGR-------TKDEDIIEAKETLSWAVSIIRKE--G 91 (155)
T ss_dssp -CCCCCEEEECCSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTT-------SCHHHHHHHHHHHHHHHHHHHHT--T
T ss_pred ccccCeEEEEECCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCc-------ccHHHHHHHHHHHHHHHHHHHhc--C
Confidence 4589999999999 999999999999999999999999999986431 11334556777788888877765 5
Q ss_pred ccEEEE--EEcCCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEe
Q 026225 147 VQFEVA--VVEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVR 218 (241)
Q Consensus 147 v~v~~~--~~~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~ 218 (241)
+++++. +..|++. ++|+++|++.++||||||+++++.+.++++ ||++++|+++++||||+||
T Consensus 92 ~~~~~~~~v~~G~~~-~~I~~~a~~~~~DLIV~G~~g~~~~~~~~l---------GSv~~~vl~~a~~PVLvVr 155 (155)
T 3dlo_A 92 AEGEEHLLVRGKEPP-DDIVDFADEVDAIAIVIGIRKRSPTGKLIF---------GSVARDVILKANKPVICIK 155 (155)
T ss_dssp CCEEEEEEESSSCHH-HHHHHHHHHTTCSEEEEECCEECTTSCEEC---------CHHHHHHHHHCSSCEEEEC
T ss_pred CCceEEEEecCCCHH-HHHHHHHHHcCCCEEEECCCCCCCCCCEEe---------ccHHHHHHHhCCCCEEEeC
Confidence 666544 5557765 599999999999999999999999999888 9999999999999999996
No 9
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=99.89 E-value=5.7e-23 Score=160.61 Aligned_cols=136 Identities=21% Similarity=0.232 Sum_probs=100.1
Q ss_pred CCCCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCC---C-----CCchhhHhhhhHHHHHHHHHHHHHH
Q 026225 69 SSGRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNK---Q-----ATGEESGKQRAPRGYEFVHSLKNMC 140 (241)
Q Consensus 69 ~~~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~---~-----~~~~~~~~~~~~~~~~~l~~~~~~~ 140 (241)
.++++||||+|+|+.+..|++||+.+|...+++|+++||.++.... . ...++..+...+++++.++.+.+.+
T Consensus 4 ~~~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 83 (150)
T 3tnj_A 4 SVYHHILLAVDFSSEDSQVVQKVRNLASQIGARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQKLSQIGNTL 83 (150)
T ss_dssp CCCSEEEEECCCSTTHHHHHHHHHHHHHHHTCEEEEEEEEC--------CTTCCCSSSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CccceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEEcCccccccccccccCcCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3689999999999999999999999999999999999999864321 1 0112234444555555555554433
Q ss_pred HhhCCCcc-EEEEEEcCCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeC
Q 026225 141 QQKRPEVQ-FEVAVVEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRR 219 (241)
Q Consensus 141 ~~~~~~v~-v~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~ 219 (241)
+++ ++..+..|++.. .|+++++++++||||||+++++.+. +++ ||++++|+++++||||+||+
T Consensus 84 -----~~~~~~~~~~~g~~~~-~I~~~a~~~~~dliV~G~~~~~~~~-~~~---------Gs~~~~vl~~~~~pVlvv~~ 147 (150)
T 3tnj_A 84 -----GIDPAHRWLVWGEPRE-EIIRIAEQENVDLIVVGSHGRHGLA-LLL---------GSTANSVLHYAKCDVLAVRL 147 (150)
T ss_dssp -----TCCGGGEEEEESCHHH-HHHHHHHHTTCSEEEEEEC---------C---------CCHHHHHHHHCSSEEEEEEC
T ss_pred -----CCCcceEEEecCCHHH-HHHHHHHHcCCCEEEEecCCCCCcC-eEe---------cchHHHHHHhCCCCEEEEeC
Confidence 454 467788898654 9999999999999999999999888 888 99999999999999999987
Q ss_pred C
Q 026225 220 K 220 (241)
Q Consensus 220 ~ 220 (241)
+
T Consensus 148 ~ 148 (150)
T 3tnj_A 148 R 148 (150)
T ss_dssp C
T ss_pred C
Confidence 5
No 10
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=99.89 E-value=1.6e-22 Score=162.38 Aligned_cols=142 Identities=23% Similarity=0.476 Sum_probs=103.5
Q ss_pred CCCCEEEEeecCCH---------HHHHHHHHHHHhhcc---CCCEEEEEEEEcCCCCCCC------C-chh---hHhhhh
Q 026225 69 SSGRKIMIVVDSSN---------EAKGALQWSLTHTVQ---SQDKVVLVYVIKPSNNKQA------T-GEE---SGKQRA 126 (241)
Q Consensus 69 ~~~~~ILVavD~s~---------~s~~al~~A~~~a~~---~~~~l~LlhV~~~~~~~~~------~-~~~---~~~~~~ 126 (241)
..+++|||++|+++ .+..|++||+.++.+ .+++|++|||+++...... . ... ..+...
T Consensus 3 ~~~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (175)
T 2gm3_A 3 SEPTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSNK 82 (175)
T ss_dssp --CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHHHHTTSHH
T ss_pred CCccEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecccccccccccccCCHHHHHHHHHHHH
Confidence 45799999999999 999999999998744 5789999999864321110 1 111 122233
Q ss_pred HHHHHHHHHHHHHHHhhCCCccEEEEEEcCCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHH
Q 026225 127 PRGYEFVHSLKNMCQQKRPEVQFEVAVVEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYC 206 (241)
Q Consensus 127 ~~~~~~l~~~~~~~~~~~~~v~v~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~v 206 (241)
+++++.++.+.+.+... |+++++.+..|++. +.|+++|++.++||||||+++++.+.++++ ||++++|
T Consensus 83 ~~~~~~l~~~~~~~~~~--g~~~~~~v~~G~~~-~~I~~~a~~~~~DLIVmG~~g~~~~~~~~~---------Gsva~~v 150 (175)
T 2gm3_A 83 AKGLHLLEFFVNKCHEI--GVGCEAWIKTGDPK-DVICQEVKRVRPDFLVVGSRGLGRFQKVFV---------GTVSAFC 150 (175)
T ss_dssp HHHHHHHHHHHHHHHHH--TCEEEEEEEESCHH-HHHHHHHHHHCCSEEEEEECCCC-----------------CHHHHH
T ss_pred HHHHHHHHHHHHHHHHC--CCceEEEEecCCHH-HHHHHHHHHhCCCEEEEeCCCCChhhhhhc---------CchHHHH
Confidence 45666777777776654 78999999999865 599999999999999999999999999988 9999999
Q ss_pred HhcCCceEEEEeCCCc
Q 026225 207 IQNADCMAVAVRRKSK 222 (241)
Q Consensus 207 i~~a~~pVlvV~~~~~ 222 (241)
+++++||||+||....
T Consensus 151 l~~a~~pVlvv~~~~~ 166 (175)
T 2gm3_A 151 VKHAECPVMTIKRNAD 166 (175)
T ss_dssp HHHCSSCEEEEECCGG
T ss_pred HhCCCCCEEEEcCCcC
Confidence 9999999999997654
No 11
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=99.89 E-value=1.1e-22 Score=156.77 Aligned_cols=133 Identities=17% Similarity=0.236 Sum_probs=111.4
Q ss_pred CCEEEEeecCCHHHHHHHHHHHHhh-ccCCCEEEEEEEEcCCCCCCC---CchhhHhhhh-HHHHHHHHHHHHHHHhhCC
Q 026225 71 GRKIMIVVDSSNEAKGALQWSLTHT-VQSQDKVVLVYVIKPSNNKQA---TGEESGKQRA-PRGYEFVHSLKNMCQQKRP 145 (241)
Q Consensus 71 ~~~ILVavD~s~~s~~al~~A~~~a-~~~~~~l~LlhV~~~~~~~~~---~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ 145 (241)
+++||||+|+|+.+..|++||+.+| ...+++|+++||.++...... ...+..+... +++++.++++.+.+.. .
T Consensus 1 ~~~ILv~~D~s~~s~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~ 78 (138)
T 3idf_A 1 MKKLLFAIDDTEACERAAQYILDMFGKDADCTLTLIHVKPEFMLYGEAVLAAYDEIEMKEEEKAKLLTQKFSTFFTE--K 78 (138)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHHHHTTCTTEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--T
T ss_pred CceEEEEeCCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCcccccccCcHHHHHHHHHHHHHHHHHHHHHHHHH--C
Confidence 4799999999999999999999999 999999999999987542211 1123344444 6777788888888776 4
Q ss_pred CccEEEEEEcCCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEe
Q 026225 146 EVQFEVAVVEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVR 218 (241)
Q Consensus 146 ~v~v~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~ 218 (241)
|+++++.+..|++. +.|+++++ ++||||||+++++.+.+++ ||++++|+++++||||+||
T Consensus 79 g~~~~~~v~~g~~~-~~I~~~a~--~~dliV~G~~~~~~~~~~~----------Gs~~~~vl~~~~~pVlvv~ 138 (138)
T 3idf_A 79 GINPFVVIKEGEPV-EMVLEEAK--DYNLLIIGSSENSFLNKIF----------ASHQDDFIQKAPIPVLIVK 138 (138)
T ss_dssp TCCCEEEEEESCHH-HHHHHHHT--TCSEEEEECCTTSTTSSCC----------CCTTCHHHHHCSSCEEEEC
T ss_pred CCCeEEEEecCChH-HHHHHHHh--cCCEEEEeCCCcchHHHHh----------CcHHHHHHhcCCCCEEEeC
Confidence 89999999999865 49999999 9999999999998887765 9999999999999999996
No 12
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=99.88 E-value=1.9e-22 Score=156.21 Aligned_cols=136 Identities=18% Similarity=0.247 Sum_probs=105.7
Q ss_pred CEEEEeecCCHH--HHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCc---hhhHhhhhHHHHHHHHHHHHHHHhh-CC
Q 026225 72 RKIMIVVDSSNE--AKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATG---EESGKQRAPRGYEFVHSLKNMCQQK-RP 145 (241)
Q Consensus 72 ~~ILVavD~s~~--s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~-~~ 145 (241)
++||||+|+|+. +..|++||+.+|...+++|+++||+++........ ....+...+..++.++.+.+.++.. .+
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 81 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEARIDDAEVHFLTVIPSLPYYASLGMAYTAELPGMDELREGSETQLKEIAKKFSIP 81 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHHHHHTCEEEEEEEECC----------------CHHHHHHHHHHHHHHHHTTSCCC
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHHHhcCCeEEEEEEecCCcccccccccccchhhhHHHHHHHHHHHHHHHHHHcCCC
Confidence 799999999999 99999999999999999999999998643211111 1111223344455566666666654 24
Q ss_pred CccEEEEEEcCCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEe
Q 026225 146 EVQFEVAVVEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVR 218 (241)
Q Consensus 146 ~v~v~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~ 218 (241)
++++++.+..|++. +.|+++++++++||||||+++ +.+.++++ ||++++|+++++||||+||
T Consensus 82 ~~~v~~~~~~g~~~-~~I~~~a~~~~~dliV~G~~~-~~~~~~~~---------Gs~~~~v~~~~~~pVlvv~ 143 (143)
T 3fdx_A 82 EDRMHFHVAEGSPK-DKILALAKSLPADLVIIASHR-PDITTYLL---------GSNAAAVVRHAECSVLVVR 143 (143)
T ss_dssp GGGEEEEEEESCHH-HHHHHHHHHTTCSEEEEESSC-TTCCSCSS---------CHHHHHHHHHCSSEEEEEC
T ss_pred CCceEEEEEecChH-HHHHHHHHHhCCCEEEEeCCC-CCCeeeee---------ccHHHHHHHhCCCCEEEeC
Confidence 57789999999765 599999999999999999995 77888888 9999999999999999996
No 13
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=99.86 E-value=1.6e-21 Score=150.72 Aligned_cols=134 Identities=14% Similarity=0.100 Sum_probs=102.3
Q ss_pred CCCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcC-CCCCCCCc----hhhHhhhhHHHHHHHHHHHHHHHhhC
Q 026225 70 SGRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKP-SNNKQATG----EESGKQRAPRGYEFVHSLKNMCQQKR 144 (241)
Q Consensus 70 ~~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~-~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~ 144 (241)
|+++||||+|+|+.+..|++||..+|...+++|+++||.++ ........ ++..+...+++++.++.+.+ ..
T Consensus 1 m~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~- 76 (141)
T 1jmv_A 1 MYKHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYTGLIDVNMSSMQDRISTETQKALLDLAE---SV- 76 (141)
T ss_dssp CCSEEEEEECCSTTHHHHHHHHHHHHHHHTCEEEEEEEEECCGGGCCCCEEHHHHHHTTCCCCHHHHHHHHHHH---HS-
T ss_pred CCceEEEEecCchhhHHHHHHHHHHHHhcCCEEEEEEEecCchhhhccccccchHHHHHHHHHHHHHHHHHHHH---Hc-
Confidence 68999999999999999999999999999999999999853 21111111 11222233445555554433 22
Q ss_pred CCccE-EEEEEcCCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeCCC
Q 026225 145 PEVQF-EVAVVEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRKS 221 (241)
Q Consensus 145 ~~v~v-~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~~ 221 (241)
|+++ +..+..|++.. .|+++|++.++||||||++ ++.+.+ + ||++++|+++++||||+||...
T Consensus 77 -~~~~~~~~~~~g~~~~-~I~~~a~~~~~dliV~G~~-~~~~~~--l---------gs~~~~vl~~~~~pVlvv~~~~ 140 (141)
T 1jmv_A 77 -DYPISEKLSGSGDLGQ-VLSDAIEQYDVDLLVTGHH-QDFWSK--L---------MSSTRQVMNTIKIDMLVVPLRD 140 (141)
T ss_dssp -SSCCCCEEEEEECHHH-HHHHHHHHTTCCEEEEEEC-CCCHHH--H---------HHHHHHHHTTCCSEEEEEECCC
T ss_pred -CCCceEEEEecCCHHH-HHHHHHHhcCCCEEEEeCC-Cchhhh--h---------cchHHHHHhcCCCCEEEeeCCC
Confidence 5665 56777888654 9999999999999999999 888877 3 8999999999999999998753
No 14
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.83 E-value=2.1e-20 Score=161.84 Aligned_cols=150 Identities=11% Similarity=0.165 Sum_probs=126.1
Q ss_pred CCCCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCC----CCchhhHhhhhHHHHHHHHHHHHHHHhhC
Q 026225 69 SSGRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQ----ATGEESGKQRAPRGYEFVHSLKNMCQQKR 144 (241)
Q Consensus 69 ~~~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 144 (241)
.|+++|||++|+|+.+..|++||+.+|...+++|+++||+++..... ....+..+...+.+++.++++.+.+...
T Consensus 20 ~m~~~ILv~vD~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~- 98 (294)
T 3loq_A 20 FQSNAMLLPTDLSENSFKVLEYLGDFKKVGVEEIGVLFVINLTKLSTVSGGIDIDHYIDEMSEKAEEVLPEVAQKIEAA- 98 (294)
T ss_dssp STTCEEEEECCSCTGGGGGGGGHHHHHHTTCCEEEEECCEECTTC-----CCCTTHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HhhccEEEecCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHc-
Confidence 47899999999999999999999999999999999999998654221 1234455666777888888888888764
Q ss_pred CCccEEE-EEE-cCCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeCCC-
Q 026225 145 PEVQFEV-AVV-EGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRKS- 221 (241)
Q Consensus 145 ~~v~v~~-~~~-~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~~- 221 (241)
|++++. .+. .|++.. .| ++++.++||||||+++++.+.++++ ||++++++++++||||+||...
T Consensus 99 -g~~~~~~~v~~~g~~~~-~I--~a~~~~~DliV~G~~g~~~~~~~~~---------Gs~~~~vl~~~~~PVlvv~~~~~ 165 (294)
T 3loq_A 99 -GIKAEVIKPFPAGDPVV-EI--IKASENYSFIAMGSRGASKFKKILL---------GSVSEGVLHDSKVPVYIFKHDMV 165 (294)
T ss_dssp -TCEEEECSSCCEECHHH-HH--HHHHTTSSEEEEECCCCCHHHHHHH---------CCHHHHHHHHCSSCEEEECCCTT
T ss_pred -CCCcceeEeeccCChhH-he--eeccCCCCEEEEcCCCCccccceee---------ccHHHHHHhcCCCCEEEecCccc
Confidence 899998 777 788654 77 9999999999999999999999999 9999999999999999999875
Q ss_pred --cCCCCeEEecc
Q 026225 222 --KKLGGYLITTK 232 (241)
Q Consensus 222 --~~~~~~li~t~ 232 (241)
...+.+|+.+.
T Consensus 166 ~~~~~~~Ilv~~d 178 (294)
T 3loq_A 166 VNSLFDRVLVAYD 178 (294)
T ss_dssp TTCTTSEEEEECC
T ss_pred cCccCCEEEEEEC
Confidence 44567777775
No 15
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.83 E-value=2.3e-20 Score=162.91 Aligned_cols=152 Identities=11% Similarity=0.162 Sum_probs=120.9
Q ss_pred CCCCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCC--C----chhhHhhhhHHHHHHHHHHHHHHHh
Q 026225 69 SSGRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQA--T----GEESGKQRAPRGYEFVHSLKNMCQQ 142 (241)
Q Consensus 69 ~~~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~--~----~~~~~~~~~~~~~~~l~~~~~~~~~ 142 (241)
.++++|||++|+|+.+..|++||+.+|...+++|+++||+++...... . .+...+...+++++.++.+.+.+..
T Consensus 5 ~~~k~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 84 (319)
T 3olq_A 5 EKYQNLLVVIDPNQDDQPALRRAVYIVQRNGGRIKAFLPVYDLSYDMTTLLSPDERNAMRKGVINQKTAWIKQQARYYLE 84 (319)
T ss_dssp CCSCEEEEECCTTCSCCHHHHHHHHHHHHHCCEEEEEEEECCGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccceEEEEECCCcccHHHHHHHHHHHHHcCCeEEEEEEecccchhhccccChhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 368999999999999999999999999999999999999874321111 1 1222333445566777777776654
Q ss_pred hCCCccEEEEEE-cCCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeCCC
Q 026225 143 KRPEVQFEVAVV-EGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRKS 221 (241)
Q Consensus 143 ~~~~v~v~~~~~-~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~~ 221 (241)
.|+++++.+. .|++.. .|++++++.++||||||+++++.+.++++ ||++++++++++||||+|+...
T Consensus 85 --~~v~~~~~~~~~g~~~~-~i~~~a~~~~~DLiV~G~~g~~~~~~~~~---------Gs~~~~vl~~~~~PVlvv~~~~ 152 (319)
T 3olq_A 85 --AGIQIDIKVIWHNRPYE-AIIEEVITDKHDLLIKMAHQHDKLGSLIF---------TPLDWQLLRKCPAPVWMVKDKE 152 (319)
T ss_dssp --TTCCEEEEEEECSCHHH-HHHHHHHHHTCSEEEEEEBCC--CCSCBC---------CHHHHHHHHHCSSCEEEEESSC
T ss_pred --cCCeEEEEEEecCChHH-HHHHHHHhcCCCEEEEecCcCchhhcccc---------cccHHHHHhcCCCCEEEecCcc
Confidence 4899999999 788655 99999999999999999999999989888 9999999999999999999775
Q ss_pred cC-CCCeEEecc
Q 026225 222 KK-LGGYLITTK 232 (241)
Q Consensus 222 ~~-~~~~li~t~ 232 (241)
.. .+.+|+.+.
T Consensus 153 ~~~~~~Ilva~D 164 (319)
T 3olq_A 153 WPEYGTIVVAAN 164 (319)
T ss_dssp CCTTCEEEEECC
T ss_pred cccCCeEEEEEC
Confidence 43 566777775
No 16
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.83 E-value=6.1e-20 Score=160.12 Aligned_cols=152 Identities=15% Similarity=0.216 Sum_probs=123.4
Q ss_pred CCCCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCC---CCchhhHhhhhHHHHHHHHHHHHHHHhh--
Q 026225 69 SSGRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQ---ATGEESGKQRAPRGYEFVHSLKNMCQQK-- 143 (241)
Q Consensus 69 ~~~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~-- 143 (241)
.++++|||++|+|+.+..|++||+.+|...+++|+++||+++..... ....+..+...+.+++.++++.+.+...
T Consensus 17 ~~~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 96 (309)
T 3cis_A 17 NSSLGIIVGIDDSPAAQVAVRWAARDAELRKIPLTLVHAVSPEVATWLEVPLPPGVLRWQQDHGRHLIDDALKVVEQASL 96 (309)
T ss_dssp -CTTEEEEECCSSHHHHHHHHHHHHHHHHHTCCEEEEEECCCCCCCTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred CCCCeEEEEECCCHHHHHHHHHHHHHHHhcCCcEEEEEEecCcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 47899999999999999999999999999999999999987432111 1122344445566777888888777764
Q ss_pred -CCCccEEEEEEcCCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeCCCc
Q 026225 144 -RPEVQFEVAVVEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRKSK 222 (241)
Q Consensus 144 -~~~v~v~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~~~ 222 (241)
.+++++++.+..|++.. .|+++++ ++||||||+++++.+.++++ ||++++|+++++||||+|+....
T Consensus 97 ~~~~~~~~~~~~~g~~~~-~I~~~a~--~~DliV~G~~g~~~~~~~~~---------Gs~~~~vl~~~~~PVlvv~~~~~ 164 (309)
T 3cis_A 97 RAGPPTVHSEIVPAAAVP-TLVDMSK--DAVLMVVGCLGSGRWPGRLL---------GSVSSGLLRHAHCPVVIIHDEDS 164 (309)
T ss_dssp SSCCSCEEEEEESSCHHH-HHHHHGG--GEEEEEEESSCTTCCTTCCS---------CHHHHHHHHHCSSCEEEECTTCC
T ss_pred cCCCceEEEEEecCCHHH-HHHHHhc--CCCEEEECCCCCcccccccc---------CcHHHHHHHhCCCCEEEEcCCcc
Confidence 35899999999998654 9999986 89999999999999988888 99999999999999999997752
Q ss_pred -----CCCCeEEecc
Q 026225 223 -----KLGGYLITTK 232 (241)
Q Consensus 223 -----~~~~~li~t~ 232 (241)
..+.+|+.+.
T Consensus 165 ~~~~~~~~~Ilv~~D 179 (309)
T 3cis_A 165 VMPHPQQAPVLVGVD 179 (309)
T ss_dssp CSCSSCCCCEEEECC
T ss_pred cCCCCCCCeEEEEeC
Confidence 3457777774
No 17
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.82 E-value=4.9e-20 Score=157.19 Aligned_cols=147 Identities=18% Similarity=0.220 Sum_probs=118.1
Q ss_pred CEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCC------CC-Cchhh-------HhhhhHHHHHHHHHHH
Q 026225 72 RKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNK------QA-TGEES-------GKQRAPRGYEFVHSLK 137 (241)
Q Consensus 72 ~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~------~~-~~~~~-------~~~~~~~~~~~l~~~~ 137 (241)
++|||++|+|+.+..|++||+.+|...+++|+++||+++.... .. ..++. .+...+.+++.++.+.
T Consensus 1 k~ILv~vD~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 80 (268)
T 3ab8_A 1 MRILLATDGSPQARGAEALAEWLAYKLSAPLTVLFVVDTRLARIPELLDFGALTVPVPVLRTELERALALRGEAVLERVR 80 (268)
T ss_dssp CCEEEECCSCGGGHHHHHHHHHHHHHHTCCEEEEEEEEHHHHTHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHHhCCcEEEEEEeccCCcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999999999999999998743210 00 01111 2334456667777777
Q ss_pred HHHHhhCCCccEEEEEEcCCCchHHHHHHHHHcCCcEEEEccCCCC-chhhHhhhhcCCCCCCCCHHHHHHhcCCceEEE
Q 026225 138 NMCQQKRPEVQFEVAVVEGKEKGPAIVEEARKQGVALLVLGQKKRS-TTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVA 216 (241)
Q Consensus 138 ~~~~~~~~~v~v~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~~~-~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlv 216 (241)
+.+... |+++++.+..|++.. .|+++ +.++||||||+++++ .+.++++ ||++++|+++++||||+
T Consensus 81 ~~~~~~--g~~~~~~~~~g~~~~-~I~~~--~~~~dliV~G~~g~~~~~~~~~~---------Gs~~~~v~~~a~~PVlv 146 (268)
T 3ab8_A 81 QSALAA--GVAVEAVLEEGVPHE-AILRR--ARAADLLVLGRSGEAHGDGFGGL---------GSTADRVLRASPVPVLL 146 (268)
T ss_dssp HHHHHT--TCCEEEEEEEECHHH-HHHHH--HTTCSEEEEESSCTTSCTTCCSC---------CHHHHHHHHHCSSCEEE
T ss_pred HHHHhC--CCCeEEEEecCCHHH-HHHhh--ccCCCEEEEeccCCCcccccccc---------chhHHHHHHhCCCCEEE
Confidence 777653 899999999998655 99998 889999999999998 8888888 99999999999999999
Q ss_pred EeCCCcCCCCeEEecc
Q 026225 217 VRRKSKKLGGYLITTK 232 (241)
Q Consensus 217 V~~~~~~~~~~li~t~ 232 (241)
||......+.+|+.+.
T Consensus 147 v~~~~~~~~~ilv~~d 162 (268)
T 3ab8_A 147 APGEPVELEGALLGYD 162 (268)
T ss_dssp ECSSCCCCCEEEEECC
T ss_pred ECCCCCCCCEEEEEEC
Confidence 9987665667888775
No 18
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=99.82 E-value=3.4e-20 Score=142.88 Aligned_cols=129 Identities=10% Similarity=0.113 Sum_probs=101.7
Q ss_pred CCCCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEE-cC-C-CC-----CCCCchhhHhhhhHHHHHHHHHHHHHH
Q 026225 69 SSGRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVI-KP-S-NN-----KQATGEESGKQRAPRGYEFVHSLKNMC 140 (241)
Q Consensus 69 ~~~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~-~~-~-~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~ 140 (241)
.|+++|||++|+|+.+..|++||+.+|...+++|+++||+ +. . .. ......+..+...+.+++.++.+ +.+
T Consensus 2 ~~~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~ 80 (138)
T 1q77_A 2 NAMKVLLVLTDAYSDCEKAITYAVNFSEKLGAELDILAVLEDVYNLERANVTFGLPFPPEIKEESKKRIERRLREV-WEK 80 (138)
T ss_dssp CCCEEEEEEESTTCCCHHHHHHHHHHHTTTCCEEEEEEECHHHHHHHHHHHHHCCCCCTHHHHHHHHHHHHHHHHH-HHH
T ss_pred CcccEEEEEccCCHhHHHHHHHHHHHHHHcCCeEEEEEEecccccccccccccCCCCChHHHHHHHHHHHHHHHHH-HHH
Confidence 3689999999999999999999999999999999999998 62 1 00 01111334455556677777777 664
Q ss_pred HhhCCCccEEEEEEcCCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEe
Q 026225 141 QQKRPEVQFEVAVVEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVR 218 (241)
Q Consensus 141 ~~~~~~v~v~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~ 218 (241)
....+| ++++.+..|++.. .|+++|++.++||||||++++ |++++|+++++||||+||
T Consensus 81 ~~~~~~-~~~~~~~~g~~~~-~I~~~a~~~~~dliV~G~~g~------------------sv~~~vl~~a~~PVlvv~ 138 (138)
T 1q77_A 81 LTGSTE-IPGVEYRIGPLSE-EVKKFVEGKGYELVVWACYPS------------------AYLCKVIDGLNLASLIVK 138 (138)
T ss_dssp HHSCCC-CCCEEEECSCHHH-HHHHHHTTSCCSEEEECSCCG------------------GGTHHHHHHSSSEEEECC
T ss_pred hhccCC-cceEEEEcCCHHH-HHHHHHHhcCCCEEEEeCCCC------------------chHHHHHHhCCCceEeeC
Confidence 222356 7888888898654 999999999999999999875 488999999999999985
No 19
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.81 E-value=1.6e-19 Score=156.17 Aligned_cols=137 Identities=15% Similarity=0.176 Sum_probs=104.5
Q ss_pred CCCEEEEeecCCHH-------HHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCc-hhhHhhhhHHHHHHHHHHHHHHH
Q 026225 70 SGRKIMIVVDSSNE-------AKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATG-EESGKQRAPRGYEFVHSLKNMCQ 141 (241)
Q Consensus 70 ~~~~ILVavD~s~~-------s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~ 141 (241)
.+++||||+|+|+. +..++++|..++...+++|+++||+++........ ....+...++.++.++. .++
T Consensus 133 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~ 209 (290)
T 3mt0_A 133 TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAKATLHVISAHPSPMLSSADPTFQLSETIEARYREACRT---FQA 209 (290)
T ss_dssp TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEC---------CHHHHHHHHHHHHHHHHH---HHH
T ss_pred CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHcCCeEEEEEEecCccccccCchhHHHHHHHHHHHHHHHH---HHH
Confidence 57999999999988 99999999999999999999999998654221111 12223333344444444 333
Q ss_pred hhCCCcc-EEEEEEcCCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeCC
Q 026225 142 QKRPEVQ-FEVAVVEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRK 220 (241)
Q Consensus 142 ~~~~~v~-v~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~ 220 (241)
.. |++ ++..+..|++. +.|+++++++++||||||+++++.+.++++ ||++++|+++++||||+||+.
T Consensus 210 ~~--g~~~~~~~v~~g~~~-~~I~~~a~~~~~dLiVmG~~g~~~~~~~~~---------Gsv~~~vl~~~~~pVLvv~~~ 277 (290)
T 3mt0_A 210 EY--GFSDEQLHIEEGPAD-VLIPRTAQKLDAVVTVIGTVARTGLSGALI---------GNTAEVVLDTLESDVLVLKPD 277 (290)
T ss_dssp HH--TCCTTTEEEEESCHH-HHHHHHHHHHTCSEEEEECCSSCCGGGCCS---------CHHHHHHHTTCSSEEEEECCH
T ss_pred Hc--CCCcceEEEeccCHH-HHHHHHHHhcCCCEEEECCCCCcCCcceec---------chHHHHHHhcCCCCEEEECCC
Confidence 33 553 56677889754 599999999999999999999999999998 999999999999999999865
Q ss_pred C
Q 026225 221 S 221 (241)
Q Consensus 221 ~ 221 (241)
.
T Consensus 278 ~ 278 (290)
T 3mt0_A 278 D 278 (290)
T ss_dssp H
T ss_pred C
Confidence 4
No 20
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.81 E-value=1.3e-19 Score=156.60 Aligned_cols=137 Identities=12% Similarity=0.094 Sum_probs=113.3
Q ss_pred CCCCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCcc
Q 026225 69 SSGRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQ 148 (241)
Q Consensus 69 ~~~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~ 148 (241)
.|+++|||++|+|+.+..|++||+.+|...+++|+++||.++ +.+++.++++.+.+.. .|++
T Consensus 5 ~~~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~----------------~~~~~~l~~~~~~~~~--~~~~ 66 (290)
T 3mt0_A 5 QAIRSILVVIEPDQLEGLALKRAQLIAGVTQSHLHLLVCEKR----------------RDHSAALNDLAQELRE--EGYS 66 (290)
T ss_dssp TTCCEEEEECCSSCSCCHHHHHHHHHHHHHCCEEEEEEECSS----------------SCCHHHHHHHHHHHHH--TTCC
T ss_pred hhhceEEEEeCCCccchHHHHHHHHHHHhcCCeEEEEEeeCc----------------HHHHHHHHHHHHHHhh--CCCe
Confidence 468999999999999999999999999999999999999873 1223344555555544 4899
Q ss_pred EEEEEEcCCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeCC-CcCCCCe
Q 026225 149 FEVAVVEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRK-SKKLGGY 227 (241)
Q Consensus 149 v~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~-~~~~~~~ 227 (241)
+++.+..+....+.|++++++.++||||||+++++.+.++++ ||++++++++++||||+|+.. ....+.+
T Consensus 67 ~~~~~~~~g~~~~~i~~~a~~~~~dliV~G~~~~~~~~~~~~---------gs~~~~vl~~~~~PVlvv~~~~~~~~~~I 137 (290)
T 3mt0_A 67 VSTNQAWKDSLHQTIIAEQQAEGCGLIIKQHFPDNPLKKAIL---------TPDDWKLLRFAPCPVLMTKTARPWTGGKI 137 (290)
T ss_dssp EEEEEECSSSHHHHHHHHHHHHTCSEEEEECCCSCTTSTTSC---------CHHHHHHHHHCSSCEEEECCCSCSTTCEE
T ss_pred EEEEEEeCCCHHHHHHHHHHhcCCCEEEEecccCCchhhccc---------CHHHHHHHhcCCCCEEEecCCCCCCCCeE
Confidence 999998644345599999999999999999999998999888 999999999999999999943 3355667
Q ss_pred EEecc
Q 026225 228 LITTK 232 (241)
Q Consensus 228 li~t~ 232 (241)
|+.+.
T Consensus 138 lva~D 142 (290)
T 3mt0_A 138 LAAVD 142 (290)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 77765
No 21
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.80 E-value=6.9e-19 Score=152.29 Aligned_cols=126 Identities=13% Similarity=0.225 Sum_probs=109.1
Q ss_pred CCCCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCcc
Q 026225 69 SSGRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQ 148 (241)
Q Consensus 69 ~~~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~ 148 (241)
..+++|||++|+++.+..++++|..++...+++|+++||.++.. .++.++.+.+.+... +++
T Consensus 168 ~~~~~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~----------------~~~~l~~~~~~l~~~--~~~ 229 (294)
T 3loq_A 168 SLFDRVLVAYDFSKWADRALEYAKFVVKKTGGELHIIHVSEDGD----------------KTADLRVMEEVIGAE--GIE 229 (294)
T ss_dssp CTTSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSSC----------------CHHHHHHHHHHHHHT--TCC
T ss_pred ccCCEEEEEECCCHHHHHHHHHHHHHhhhcCCEEEEEEEccCch----------------HHHHHHHHHHHHHHc--CCc
Confidence 45789999999999999999999999999999999999987542 233455555556554 788
Q ss_pred EEEEEEcCCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeCCCc
Q 026225 149 FEVAVVEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRKSK 222 (241)
Q Consensus 149 v~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~~~ 222 (241)
++..+..|++ .++|++++++.++||||||+++++.+.++++ ||++++++++++||||+||++..
T Consensus 230 ~~~~~~~g~~-~~~I~~~a~~~~~dLlV~G~~~~~~~~~~~~---------Gs~~~~vl~~~~~pvLvv~~~~~ 293 (294)
T 3loq_A 230 VHVHIESGTP-HKAILAKREEINATTIFMGSRGAGSVMTMIL---------GSTSESVIRRSPVPVFVCKRGDD 293 (294)
T ss_dssp EEEEEECSCH-HHHHHHHHHHTTCSEEEEECCCCSCHHHHHH---------HCHHHHHHHHCSSCEEEECSCTT
T ss_pred EEEEEecCCH-HHHHHHHHHhcCcCEEEEeCCCCCCccceee---------CcHHHHHHhcCCCCEEEECCCCC
Confidence 9999999975 5599999999999999999999999999999 99999999999999999987643
No 22
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.79 E-value=4.8e-19 Score=154.44 Aligned_cols=138 Identities=16% Similarity=0.176 Sum_probs=108.4
Q ss_pred CCCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccE
Q 026225 70 SGRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQF 149 (241)
Q Consensus 70 ~~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v 149 (241)
.+++|||++|+++.+..++++|+.++...+++|+++||.++......... ......++.++.++++.+.+....+++++
T Consensus 170 ~~~~Ilv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 248 (309)
T 3cis_A 170 QQAPVLVGVDGSSASELATAIAFDEASRRNVDLVALHAWSDVDVSEWPGI-DWPATQSMAEQVLAERLAGWQERYPNVAI 248 (309)
T ss_dssp CCCCEEEECCSSHHHHHHHHHHHHHHHHTTCCEEEEEESCSSCCTTCSSC-CHHHHHHHHHHHHHHHHTTHHHHCTTSCE
T ss_pred CCCeEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEEEeecccccCCCcc-cHHHHHHHHHHHHHHHHHHHHhhCCCCcE
Confidence 36799999999999999999999999999999999999876432111111 11223344445555555444433358999
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeCC
Q 026225 150 EVAVVEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRK 220 (241)
Q Consensus 150 ~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~ 220 (241)
+..+..|++. +.|+++++ ++||||||+++++.+.++++ ||++++|+++++||||+||+.
T Consensus 249 ~~~~~~g~~~-~~I~~~a~--~adliV~G~~~~~~~~~~l~---------Gsv~~~vl~~~~~pVlvv~~~ 307 (309)
T 3cis_A 249 TRVVVRDQPA-RQLVQRSE--EAQLVVVGSRGRGGYAGMLV---------GSVGETVAQLARTPVIVARES 307 (309)
T ss_dssp EEEEESSCHH-HHHHHHHT--TCSEEEEESSCSSCCTTCSS---------CHHHHHHHHHCSSCEEEECC-
T ss_pred EEEEEcCCHH-HHHHHhhC--CCCEEEECCCCCCCcccccc---------CcHHHHHHhcCCCCEEEeCCC
Confidence 9999999764 59999997 89999999999999999998 999999999999999999853
No 23
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.78 E-value=1e-18 Score=152.45 Aligned_cols=138 Identities=16% Similarity=0.139 Sum_probs=107.7
Q ss_pred CCCEEEEeecCCH-------HHHHHHHHHHHhhccC--CCEEEEEEEEcCCCCCCC------CchhhHhhhhHHHHHHHH
Q 026225 70 SGRKIMIVVDSSN-------EAKGALQWSLTHTVQS--QDKVVLVYVIKPSNNKQA------TGEESGKQRAPRGYEFVH 134 (241)
Q Consensus 70 ~~~~ILVavD~s~-------~s~~al~~A~~~a~~~--~~~l~LlhV~~~~~~~~~------~~~~~~~~~~~~~~~~l~ 134 (241)
.+++|||++|+++ .+..++++|..++... +++|+++||+++...... ......++..+++.+.++
T Consensus 155 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 234 (319)
T 3olq_A 155 EYGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINIAIELPDFDPNLYNNALRGQHLIAMK 234 (319)
T ss_dssp TTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSCCTTCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCcchhhhccCCcccHHHHHHHHHHHHHHHHH
Confidence 5789999999998 6799999999999988 999999999986542211 112233333444444444
Q ss_pred HHHHHHHhhCCCc-cEEEEEEcCCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCce
Q 026225 135 SLKNMCQQKRPEV-QFEVAVVEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCM 213 (241)
Q Consensus 135 ~~~~~~~~~~~~v-~v~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~p 213 (241)
.+ ++.. ++ .++..+..|++ .+.|+++++++++||||||+++++.+.++++ ||++++|+++++||
T Consensus 235 ~~---~~~~--~~~~~~~~v~~g~~-~~~I~~~a~~~~~dLiV~G~~g~~~~~~~~~---------Gsv~~~vl~~~~~p 299 (319)
T 3olq_A 235 EL---RQKF--SIPEEKTHVKEGLP-EQVIPQVCEELNAGIVVLGILGRTGLSAAFL---------GNTAEQLIDHIKCD 299 (319)
T ss_dssp HH---HHHT--TCCGGGEEEEESCH-HHHHHHHHHHTTEEEEEEECCSCCSTHHHHH---------HHHHHHHHTTCCSE
T ss_pred HH---HHHh--CCCcccEEEecCCc-HHHHHHHHHHhCCCEEEEeccCccCCccccc---------cHHHHHHHhhCCCC
Confidence 43 3332 33 35667778986 5599999999999999999999999999999 99999999999999
Q ss_pred EEEEeCCCc
Q 026225 214 AVAVRRKSK 222 (241)
Q Consensus 214 VlvV~~~~~ 222 (241)
||+||+...
T Consensus 300 VLvv~~~~~ 308 (319)
T 3olq_A 300 LLAIKPDGF 308 (319)
T ss_dssp EEEECCTTC
T ss_pred EEEECCCCC
Confidence 999987653
No 24
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.68 E-value=1.2e-16 Score=136.16 Aligned_cols=116 Identities=22% Similarity=0.195 Sum_probs=97.7
Q ss_pred CCCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccE
Q 026225 70 SGRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQF 149 (241)
Q Consensus 70 ~~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v 149 (241)
.+++|||++|+++.+..++++|..++...+++|+++||.++. +..++.++.+.+.+... |+++
T Consensus 153 ~~~~ilv~~d~s~~~~~al~~a~~la~~~~a~l~ll~v~~~~---------------~~~~~~l~~~~~~l~~~--~~~~ 215 (268)
T 3ab8_A 153 ELEGALLGYDASESAVRALHALAPLARALGLGVRVVSVHEDP---------------ARAEAWALEAEAYLRDH--GVEA 215 (268)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHHHHHHTCCEEEEEECSSH---------------HHHHHHHHHHHHHHHHT--TCCE
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHhhhcCCCEEEEEEEcCcH---------------HHHHHHHHHHHHHHHHc--CCce
Confidence 468999999999999999999999998889999999997642 12344556666666653 7899
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEe
Q 026225 150 EVAVVEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVR 218 (241)
Q Consensus 150 ~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~ 218 (241)
++.+..|++. ++|++++++. ||||||+ .+.++++ ||++++++++++||||+||
T Consensus 216 ~~~~~~g~~~-~~i~~~a~~~--dliV~G~----~~~~~~~---------Gs~~~~vl~~~~~pvlvv~ 268 (268)
T 3ab8_A 216 SALVLGGDAA-DHLLRLQGPG--DLLALGA----PVRRLVF---------GSTAERVIRNAQGPVLTAR 268 (268)
T ss_dssp EEEEECSCHH-HHHHHHCCTT--EEEEEEC----CCSCCSS---------CCHHHHHHHHCSSCEEEEC
T ss_pred EEEEeCCChH-HHHHHHHHhC--CEEEECC----cccccEe---------ccHHHHHHhcCCCCEEEeC
Confidence 9888888765 5999999987 9999999 5677777 9999999999999999995
No 25
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=94.34 E-value=0.24 Score=45.13 Aligned_cols=105 Identities=15% Similarity=0.204 Sum_probs=70.8
Q ss_pred CCCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccE
Q 026225 70 SGRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQF 149 (241)
Q Consensus 70 ~~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v 149 (241)
..++|+|++.+..+|..++..+.++....+.++.++||..... + ....+..+.+++.|+.. |+++
T Consensus 17 ~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvdhglr-----g--------~~s~~~~~~v~~~~~~l--gi~~ 81 (464)
T 3a2k_A 17 EGAAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMFR-----G--------RESEEEMEFVKRFCVER--RILC 81 (464)
T ss_dssp CSSBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECTTC-----T--------HHHHHHHHHHHHHHHHT--TCEE
T ss_pred CCCEEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEECCCC-----c--------cccHHHHHHHHHHHHHc--CCcE
Confidence 4578999999999999888888877766778999999975421 0 12223345566777764 7777
Q ss_pred EEEEEc--------CCCch--------HHHHHHHHHcCCcEEEEccCCCCchhhHh
Q 026225 150 EVAVVE--------GKEKG--------PAIVEEARKQGVALLVLGQKKRSTTWRLF 189 (241)
Q Consensus 150 ~~~~~~--------G~~~~--------~~I~~~a~~~~~dllVmG~~~~~~~~~~l 189 (241)
.+.-+. |...+ ..+.++|++++++.|+.|.+.......++
T Consensus 82 ~v~~~~~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~IatgH~~dD~aEt~L 137 (464)
T 3a2k_A 82 ETAQIDVPAFQRSAGLGAQEAARICRYRFFAELMEKHQAGYVAVGHHGDDQVETIL 137 (464)
T ss_dssp EEEECCCHHHHTTTTCCSHHHHHHHHHHHHHHHHHTTTCCEEECCCCHHHHHHHHH
T ss_pred EEEEechhhhhhccCCCHHHHHHHHHHHHHHHHHHHcCcCEEEEeCChHHHHHHHH
Confidence 665543 11111 24556777889999999987654444444
No 26
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=94.32 E-value=0.69 Score=39.75 Aligned_cols=97 Identities=10% Similarity=0.031 Sum_probs=64.7
Q ss_pred CCCEEEEeecCCHHHHHHHHHHHHhhccCCCE-EEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCcc
Q 026225 70 SGRKIMIVVDSSNEAKGALQWSLTHTVQSQDK-VVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQ 148 (241)
Q Consensus 70 ~~~~ILVavD~s~~s~~al~~A~~~a~~~~~~-l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~ 148 (241)
..++|+|++.+..+|..++..+.++....+.+ |..+||..... ....+..+.+++.|+.. |++
T Consensus 23 ~~~~vlva~SGG~DS~~Ll~ll~~~~~~~g~~~v~av~vd~g~r--------------~~s~~~~~~v~~~a~~l--gi~ 86 (317)
T 1wy5_A 23 GERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHMLR--------------ESAERDEEFCKEFAKER--NMK 86 (317)
T ss_dssp SCCEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECCSS--------------THHHHHHHHHHHHHHHH--TCC
T ss_pred CCCEEEEEecchHHHHHHHHHHHHHHHHcCCCEEEEEEEECCCC--------------cccHHHHHHHHHHHHHc--CCc
Confidence 45799999999999998888877766556777 99999965421 11222334455566654 677
Q ss_pred EEEEEEc--------CCCch--------HHHHHHHHHcCCcEEEEccCCC
Q 026225 149 FEVAVVE--------GKEKG--------PAIVEEARKQGVALLVLGQKKR 182 (241)
Q Consensus 149 v~~~~~~--------G~~~~--------~~I~~~a~~~~~dllVmG~~~~ 182 (241)
+.+.-.. |.... ..+.+.+++.+++.|+.|.+..
T Consensus 87 ~~v~~~~~~~~~~~~~~~~e~~ar~~Ry~~l~~~a~~~g~~~i~~Gh~~d 136 (317)
T 1wy5_A 87 IFVGKEDVRAFAKENRMSLEEAGRFLRYKFLKEILESEGFDCIATAHHLN 136 (317)
T ss_dssp EEEEECCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTTCSEEECCCCHH
T ss_pred EEEEEEechhhhccCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeCchh
Confidence 6655432 21111 2455677888999999998754
No 27
>2iel_A Hypothetical protein TT0030; TT0030,thermus thermophilus, structural genomics, PSI, protein structure initiative; 1.60A {Thermus thermophilus} SCOP: c.26.2.4
Probab=92.80 E-value=2.4 Score=32.03 Aligned_cols=128 Identities=13% Similarity=0.013 Sum_probs=84.0
Q ss_pred CEEEEeecCCHHHHHHHHHHHHhhccCC-CEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEE
Q 026225 72 RKIMIVVDSSNEAKGALQWSLTHTVQSQ-DKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFE 150 (241)
Q Consensus 72 ~~ILVavD~s~~s~~al~~A~~~a~~~~-~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~ 150 (241)
++|||.+.-.-.+.........+..... .++.+|--..+. ....+ -..+....+++.|+...+.+... |+.++
T Consensus 2 ~~vlVlae~tl~~~dl~~vl~~l~~~~~~~~f~VLVPa~~~---~a~~~-e~~~a~~~A~~~l~~sl~aL~~~--G~~a~ 75 (138)
T 2iel_A 2 ARYLVVAHRTAKSPELAAKLKELLAQDPEARFVLLVPAVPP---PGWVY-EENEVRRRAEEEAAAAKRALEAQ--GIPVE 75 (138)
T ss_dssp CEEEEECSTTTTCHHHHHHHHHHHHHCTTCEEEEEEEEECC---CCSCC---CHHHHHHHHHHHHHHHHHHTT--TCCCS
T ss_pred ceEEEEecCccCcHhHHHHHHHhhcCCCceEEEEEecCCCC---ccccc-ChHHHHHHHHHHHHHHHHHHHHc--CCccc
Confidence 6889988875555444444344443443 555333222221 11111 12234455666777766666654 89998
Q ss_pred -EEEEcCCCchHHHHHHHHHcC--CcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEE
Q 026225 151 -VAVVEGKEKGPAIVEEARKQG--VALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAV 217 (241)
Q Consensus 151 -~~~~~G~~~~~~I~~~a~~~~--~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV 217 (241)
-.+.+.+|.. +|.+...+.+ +|=||+-+... ...++|- -..+.+.=+ ...||+=+
T Consensus 76 ~G~v~d~~Pl~-AL~~~v~~~~~~~deiIV~T~Ph-~vs~~fh---------~DwasrAr~-~gvPVlhl 133 (138)
T 2iel_A 76 EAKAGDISPLL-AIEEELLAHPGAYQGIVLSTLPP-GLSRWLR---------LDVHTQAER-FGLPVIHV 133 (138)
T ss_dssp EEEEEESSHHH-HHHHHHHHSTTSCSEEEEEECCT-TTCHHHH---------TTHHHHGGG-GSSCEEEE
T ss_pred ccccCCCChHH-HHHHHHHhcCCCCceEEEEcCCc-hHHHHHh---------ccHHHHHHh-cCCCEEEE
Confidence 9999999987 9999999999 99999988774 4667776 777777777 88998865
No 28
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=92.53 E-value=4.5 Score=34.50 Aligned_cols=124 Identities=10% Similarity=0.101 Sum_probs=78.9
Q ss_pred CCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHH-HHHHHHHHHHHHHhhCCCccE
Q 026225 71 GRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPR-GYEFVHSLKNMCQQKRPEVQF 149 (241)
Q Consensus 71 ~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~v~v 149 (241)
.-+|||++.........++.|..+. .+.+-|++++|.+.... .. .++ +..+.+.++++ ++..
T Consensus 20 rP~iLV~sg~p~~~~~li~la~~lt-~~~G~ltv~~i~p~~~~-------------~~l~~q-l~~l~~~l~~r--~v~a 82 (294)
T 3g40_A 20 KANLLVPVEDPRELMGTFDFLRDIT-YPKGSVKLLGLAGNTDK-------------ENLLSQ-LPSISEGFQEE--GVFS 82 (294)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHHH-TTTCEEEEEECC---CT-------------TCHHHH-HHHHHHHHHHT--TCEE
T ss_pred CCcEEEecCCchhhhhHHHHHHHhc-cCceeEEEEEEccCCCc-------------cHHHHH-HHHHHHHHHhC--Ccee
Confidence 3489999988778888999988776 45568999999754430 11 111 35566677765 8988
Q ss_pred EEEEEcCCCchHHHHHHHHHc-----CCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeCCCc
Q 026225 150 EVAVVEGKEKGPAIVEEARKQ-----GVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRKSK 222 (241)
Q Consensus 150 ~~~~~~G~~~~~~I~~~a~~~-----~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~~~ 222 (241)
-..++...+...++...++.+ .+..|+||......-+.-+ ..+..++ .+....|++++....
T Consensus 83 ~~~vi~a~d~~~G~~~lvq~yglg~l~PNTilLg~~~~~e~~~~y----------~~~i~~~-~~~~~nVlil~~~~~ 149 (294)
T 3g40_A 83 SWTIIDTAEFEENLVVGMEALTGSFFRPSILFLRLPENRDRDEEI----------REIIRKA-SMYRMGVLLFSKHPQ 149 (294)
T ss_dssp EEEEC-----CHHHHHHHHHHTTCSSCSCEEEEECCSSGGGHHHH----------HHHHHHH-HHTTCEEEEEECCTT
T ss_pred EEEEEecCChhHHHHHHHHHcCCCCCCCCEEEeCCCCChhhhHHH----------HHHHHHH-HHhCceEEEEecCCc
Confidence 888888766666888888865 6789999977653332222 2244443 345899999975443
No 29
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=91.55 E-value=2.3 Score=33.68 Aligned_cols=64 Identities=19% Similarity=0.300 Sum_probs=48.5
Q ss_pred CccEEEEEEcCCCchHHHHHHHHH---cCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeCCCc
Q 026225 146 EVQFEVAVVEGKEKGPAIVEEARK---QGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRKSK 222 (241)
Q Consensus 146 ~v~v~~~~~~G~~~~~~I~~~a~~---~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~~~ 222 (241)
|++++..++--+-..+.+.++++. .+++.||.|+-+-..+-.++ .-+++.||+-||....
T Consensus 49 gI~~e~~V~SAHRtp~~l~~~~~~a~~~g~~ViIa~AG~aahLpGvv-----------------Aa~T~~PVIGVPv~s~ 111 (181)
T 4b4k_A 49 NIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGMV-----------------AAKTNLPVIGVPVQSK 111 (181)
T ss_dssp TCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEECSSCCHHHHH-----------------HTTCCSCEEEEECCCT
T ss_pred CCCeeEEEEccccChHHHHHHHHHHHhcCceEEEEeccccccchhhH-----------------HhcCCCCEEEEecCCC
Confidence 899999998877655577777764 57889999877766665544 3478999999999876
Q ss_pred CCCC
Q 026225 223 KLGG 226 (241)
Q Consensus 223 ~~~~ 226 (241)
..+|
T Consensus 112 ~l~G 115 (181)
T 4b4k_A 112 ALNG 115 (181)
T ss_dssp TTTT
T ss_pred Cccc
Confidence 5554
No 30
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=91.46 E-value=0.68 Score=41.75 Aligned_cols=104 Identities=18% Similarity=0.215 Sum_probs=63.9
Q ss_pred CCCEEEEeecCCHHHHHHHHHHHHhhcc-CCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCcc
Q 026225 70 SGRKIMIVVDSSNEAKGALQWSLTHTVQ-SQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQ 148 (241)
Q Consensus 70 ~~~~ILVavD~s~~s~~al~~A~~~a~~-~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~ 148 (241)
..++|+|++.+..+|..++..+.++... .+.++.++||..... ....+..+.+++.|+.. |++
T Consensus 12 ~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~g~~v~avhvdhglr--------------~~s~~~~~~v~~~~~~l--gi~ 75 (433)
T 1ni5_A 12 TSRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLS--------------ANADAWVTHCENVCQQW--QVP 75 (433)
T ss_dssp TCSEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECCSCC--------------SSHHHHHHHHHHHHHHT--TCC
T ss_pred CCCEEEEEEcchHHHHHHHHHHHHHHHhcCCCeEEEEEEECCCC--------------cccHHHHHHHHHHHHHc--CCc
Confidence 3578999999999999888888777665 678999999965432 01112234456666664 677
Q ss_pred EEEEEEc----CCCchHHHHHHHH-----H--cCCcEEEEccCCCCchhhHhh
Q 026225 149 FEVAVVE----GKEKGPAIVEEAR-----K--QGVALLVLGQKKRSTTWRLFM 190 (241)
Q Consensus 149 v~~~~~~----G~~~~~~I~~~a~-----~--~~~dllVmG~~~~~~~~~~l~ 190 (241)
+.+.-+. |...+ .....++ + .+++.|++|.+.......+++
T Consensus 76 ~~v~~~~~~~~~~~~e-~~aR~~Ry~~l~~~a~~~~~i~tgH~~dD~aEt~L~ 127 (433)
T 1ni5_A 76 LVVERVQLAQEGLGIE-AQARQARYQAFARTLLPGEVLVTAQHLDDQCETFLL 127 (433)
T ss_dssp EEEECCCCCCSSSTTT-THHHHHHHHHHHHTCCTTEEEECCCCHHHHHHHHHH
T ss_pred EEEEEecCCCCCCCHH-HHHHHHHHHHHHHHHhhCCeEEeeccchHHHHHHHH
Confidence 6655433 22222 2222221 0 258999999876544444443
No 31
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=90.06 E-value=1.9 Score=33.90 Aligned_cols=64 Identities=20% Similarity=0.255 Sum_probs=47.1
Q ss_pred CccEEEEEEcCCCchHHHHHHHHH---cCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeCCCc
Q 026225 146 EVQFEVAVVEGKEKGPAIVEEARK---QGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRKSK 222 (241)
Q Consensus 146 ~v~v~~~~~~G~~~~~~I~~~a~~---~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~~~ 222 (241)
|++++..+.--+-..+.+.+++++ .+++.||.+.-.-..+-.+ +.-.+++||+-||-...
T Consensus 39 gi~~ev~V~saHR~p~~l~~~~~~a~~~g~~ViIa~AG~aahLpgv-----------------vA~~t~~PVIgVPv~~~ 101 (173)
T 4grd_A 39 GVPYEAKVVSAHRMPDEMFDYAEKARERGLRAIIAGAGGAAHLPGM-----------------LAAKTTVPVLGVPVASK 101 (173)
T ss_dssp TCCEEEEECCTTTSHHHHHHHHHHHTTTTCSEEEEEEESSCCHHHH-----------------HHHHCCSCEEEEEECCT
T ss_pred CCCEEEEEEccccCHHHHHHHHHHHHhcCCeEEEEeccccccchhh-----------------heecCCCCEEEEEcCCC
Confidence 899998888877655577777665 6789888887766666544 33468999999997766
Q ss_pred CCCC
Q 026225 223 KLGG 226 (241)
Q Consensus 223 ~~~~ 226 (241)
..+|
T Consensus 102 ~l~G 105 (173)
T 4grd_A 102 YLKG 105 (173)
T ss_dssp TTTT
T ss_pred CCCc
Confidence 5444
No 32
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=88.69 E-value=3.9 Score=32.04 Aligned_cols=64 Identities=19% Similarity=0.300 Sum_probs=46.9
Q ss_pred CccEEEEEEcCCCchHHHHHHHHH---cCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeCCCc
Q 026225 146 EVQFEVAVVEGKEKGPAIVEEARK---QGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRKSK 222 (241)
Q Consensus 146 ~v~v~~~~~~G~~~~~~I~~~a~~---~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~~~ 222 (241)
|++++..+.--+-..+.+.+++++ .+++.||.+.-.-..+-.++ .-.+++||+-||....
T Consensus 38 Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lpgvv-----------------A~~t~~PVIgVP~~~~ 100 (170)
T 1xmp_A 38 NIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGMV-----------------AAKTNLPVIGVPVQSK 100 (170)
T ss_dssp TCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHH-----------------HTTCCSCEEEEEECCT
T ss_pred CCCEEEEEEeccCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHHHH-----------------HhccCCCEEEeeCCCC
Confidence 899998888866656688888875 45888888877666665544 4478999999998765
Q ss_pred CCCC
Q 026225 223 KLGG 226 (241)
Q Consensus 223 ~~~~ 226 (241)
..+|
T Consensus 101 ~l~G 104 (170)
T 1xmp_A 101 ALNG 104 (170)
T ss_dssp TTTT
T ss_pred CCCc
Confidence 4444
No 33
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=88.48 E-value=3.2 Score=32.49 Aligned_cols=64 Identities=16% Similarity=0.199 Sum_probs=46.2
Q ss_pred CccEEEEEEcCCCchHHHHHHHH---HcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeCCCc
Q 026225 146 EVQFEVAVVEGKEKGPAIVEEAR---KQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRKSK 222 (241)
Q Consensus 146 ~v~v~~~~~~G~~~~~~I~~~a~---~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~~~ 222 (241)
|++++..+.--+-..+.+.++++ +.+++.||.+.-....+-.+ +.-++++||+-||....
T Consensus 33 gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpgv-----------------vA~~t~~PVIgVP~~~~ 95 (169)
T 3trh_A 33 GIPFEAHILSAHRTPKETVEFVENADNRGCAVFIAAAGLAAHLAGT-----------------IAAHTLKPVIGVPMAGG 95 (169)
T ss_dssp TCCEEEEECCTTTSHHHHHHHHHHHHHTTEEEEEEEECSSCCHHHH-----------------HHHTCSSCEEEEECCCS
T ss_pred CCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHHH-----------------HHhcCCCCEEEeecCCC
Confidence 89999888886655557777755 46889888887665555443 44578999999998765
Q ss_pred CCCC
Q 026225 223 KLGG 226 (241)
Q Consensus 223 ~~~~ 226 (241)
..+|
T Consensus 96 ~l~G 99 (169)
T 3trh_A 96 SLGG 99 (169)
T ss_dssp TTTT
T ss_pred CCCC
Confidence 4444
No 34
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=87.71 E-value=3.6 Score=32.38 Aligned_cols=64 Identities=19% Similarity=0.257 Sum_probs=47.0
Q ss_pred CccEEEEEEcCCCchHHHHHHHHH---cCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeCCCc
Q 026225 146 EVQFEVAVVEGKEKGPAIVEEARK---QGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRKSK 222 (241)
Q Consensus 146 ~v~v~~~~~~G~~~~~~I~~~a~~---~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~~~ 222 (241)
|++++..+.--+-..+.+.+++++ .+++.||.+.-....+-.+ +.-++++||+-||....
T Consensus 39 Gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpgv-----------------vA~~t~~PVIgVP~~~~ 101 (174)
T 3kuu_A 39 NVPFHVEVVSAHRTPDRLFSFAEQAEANGLHVIIAGNGGAAHLPGM-----------------LAAKTLVPVLGVPVQSA 101 (174)
T ss_dssp TCCEEEEECCTTTCHHHHHHHHHHTTTTTCSEEEEEEESSCCHHHH-----------------HHHTCSSCEEEEEECCT
T ss_pred CCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHHH-----------------HHhccCCCEEEeeCCCC
Confidence 899998888877666678888764 5788888887665555443 44578999999998765
Q ss_pred CCCC
Q 026225 223 KLGG 226 (241)
Q Consensus 223 ~~~~ 226 (241)
..+|
T Consensus 102 ~l~G 105 (174)
T 3kuu_A 102 ALSG 105 (174)
T ss_dssp TTTT
T ss_pred CCCC
Confidence 4444
No 35
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Probab=87.19 E-value=3.7 Score=37.31 Aligned_cols=122 Identities=15% Similarity=0.116 Sum_probs=75.1
Q ss_pred EEEEee--cCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEE
Q 026225 73 KIMIVV--DSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFE 150 (241)
Q Consensus 73 ~ILVav--D~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~ 150 (241)
.+|+=+ |.--....||..|.+.+...+..|..|+++++.... .......-..+-|..+.+.+.+. |+++
T Consensus 38 ~~l~WfrrDLRl~DN~aL~~A~~~a~~~~~~v~~vfi~dp~~~~------~~~~r~~Fl~~sL~~L~~~L~~~--G~~L- 108 (482)
T 2xry_A 38 PVVYWMSRDQRAEDNWALLFSRAIAKEANVPVVVVFCLTDEFLE------AGIRQYEFMLKGLQELEVSLSRK--KIPS- 108 (482)
T ss_dssp CEEEECSSCCCSSSCHHHHHHHHHHHHHTSCEEEEEEECTTGGG------SCHHHHHHHHHHHHHHHHHHHHT--TCCE-
T ss_pred cEEEEecCCCCccccHHHHHHHHHHHHcCCcEEEEEEeChhhhc------cCHHHHHHHHHHHHHHHHHHHHc--CCcE-
Confidence 344443 444444567888887776667789999999875421 12222233445566666666653 6655
Q ss_pred EEEEcCCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeC
Q 026225 151 VAVVEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRR 219 (241)
Q Consensus 151 ~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~ 219 (241)
.+..|++.+ .|.+++++.+++.|+.-... .....- ....+.+...|++..+..
T Consensus 109 -~v~~g~~~~-~l~~l~~~~~~~~V~~~~~~-~~~~~~-------------~~~~v~~~lgi~~~~~~~ 161 (482)
T 2xry_A 109 -FFLRGDPGE-KISRFVKDYNAGTLVTDFSP-LRIKNQ-------------WIEKVISGISIPFFEVDA 161 (482)
T ss_dssp -EEEESCHHH-HHHHHHHHTTCSEEEEECCC-SHHHHH-------------HHHHHHHHCCSCEEEECC
T ss_pred -EEEeCCHHH-HHHHHHHHcCCCEEEEeccc-chhHHH-------------HHHHHHHHcCCEEEEEeC
Confidence 446688665 99999999999999985433 221111 234444555888887754
No 36
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=87.12 E-value=4.2 Score=31.47 Aligned_cols=65 Identities=14% Similarity=0.085 Sum_probs=48.2
Q ss_pred HHHHHHhhCCCccEEEEEEcCCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEE
Q 026225 136 LKNMCQQKRPEVQFEVAVVEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAV 215 (241)
Q Consensus 136 ~~~~~~~~~~~v~v~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVl 215 (241)
+...++. .|++++..+.--+-..+.+.+++++...+.||.+.-....+-.++ .-.+++||+
T Consensus 18 a~~~l~~--~gi~~dv~V~saHR~p~~~~~~~~~a~~~ViIa~AG~aa~Lpgvv-----------------a~~t~~PVI 78 (157)
T 2ywx_A 18 AVNILKE--FGVEFEVRVASAHRTPELVEEIVKNSKADVFIAIAGLAAHLPGVV-----------------ASLTTKPVI 78 (157)
T ss_dssp HHHHHHH--TTCCEEEEECCTTTCHHHHHHHHHHCCCSEEEEEEESSCCHHHHH-----------------HTTCSSCEE
T ss_pred HHHHHHH--cCCCeEEEEEcccCCHHHHHHHHHhcCCCEEEEEcCchhhhHHHH-----------------HhccCCCEE
Confidence 3444443 389999998887766668999998776688888877666665544 447899999
Q ss_pred EEeC
Q 026225 216 AVRR 219 (241)
Q Consensus 216 vV~~ 219 (241)
-||.
T Consensus 79 gVP~ 82 (157)
T 2ywx_A 79 AVPV 82 (157)
T ss_dssp EEEE
T ss_pred EecC
Confidence 9987
No 37
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=87.03 E-value=5.6 Score=31.01 Aligned_cols=64 Identities=17% Similarity=0.279 Sum_probs=46.9
Q ss_pred CccEEEEEEcCCCchHHHHHHHHH---cCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeCCCc
Q 026225 146 EVQFEVAVVEGKEKGPAIVEEARK---QGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRKSK 222 (241)
Q Consensus 146 ~v~v~~~~~~G~~~~~~I~~~a~~---~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~~~ 222 (241)
|+.++..+.--+-..+.+.+++++ .+++.||.+.-....+-.+ +.-++++||+-||....
T Consensus 32 gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpgv-----------------vA~~t~~PVIgVP~~~~ 94 (166)
T 3oow_A 32 GIGYECEVVSAHRTPDKMFDYAETAKERGLKVIIAGAGGAAHLPGM-----------------VAAKTTLPVLGVPVKSS 94 (166)
T ss_dssp TCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEECSSCCHHHH-----------------HHHTCSSCEEEEECCCT
T ss_pred CCCEEEEEEcCcCCHHHHHHHHHHHHhCCCcEEEEECCcchhhHHH-----------------HHhccCCCEEEeecCcC
Confidence 899998888877655678888765 4678888887766555443 44578999999998765
Q ss_pred CCCC
Q 026225 223 KLGG 226 (241)
Q Consensus 223 ~~~~ 226 (241)
..+|
T Consensus 95 ~l~G 98 (166)
T 3oow_A 95 TLNG 98 (166)
T ss_dssp TTTT
T ss_pred CCCC
Confidence 4444
No 38
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=85.89 E-value=4.7 Score=31.92 Aligned_cols=64 Identities=19% Similarity=0.323 Sum_probs=46.8
Q ss_pred CccEEEEEEcCCCchHHHHHHHHH---cCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeCCCc
Q 026225 146 EVQFEVAVVEGKEKGPAIVEEARK---QGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRKSK 222 (241)
Q Consensus 146 ~v~v~~~~~~G~~~~~~I~~~a~~---~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~~~ 222 (241)
|++++..+.--+-..+.+.+++++ .+++.||.+.-.-..+-.+ +.-++++||+-||....
T Consensus 48 Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lpgv-----------------vA~~t~~PVIgVP~~~~ 110 (182)
T 1u11_A 48 EIPHETLIVSAHRTPDRLADYARTAAERGLNVIIAGAGGAAHLPGM-----------------CAAWTRLPVLGVPVESR 110 (182)
T ss_dssp TCCEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHH-----------------HHHHCSSCEEEEEECCT
T ss_pred CCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCchhhhHHH-----------------HHhccCCCEEEeeCCCC
Confidence 899998888877666688888875 4588888887665555443 34478999999998765
Q ss_pred CCCC
Q 026225 223 KLGG 226 (241)
Q Consensus 223 ~~~~ 226 (241)
..+|
T Consensus 111 ~l~G 114 (182)
T 1u11_A 111 ALKG 114 (182)
T ss_dssp TTTT
T ss_pred CCCc
Confidence 4443
No 39
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=85.85 E-value=5 Score=31.23 Aligned_cols=72 Identities=19% Similarity=0.251 Sum_probs=49.5
Q ss_pred HHHHHHhhCCCccEEEEEEcCCCchHHHHHHHHH---cCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCc
Q 026225 136 LKNMCQQKRPEVQFEVAVVEGKEKGPAIVEEARK---QGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADC 212 (241)
Q Consensus 136 ~~~~~~~~~~~v~v~~~~~~G~~~~~~I~~~a~~---~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~ 212 (241)
+...++. .|++++..+.--+-..+.+.+++++ .+++.||.+.-....+-.+ +.-++++
T Consensus 22 a~~~l~~--~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpgv-----------------vA~~t~~ 82 (163)
T 3ors_A 22 SCNMLDY--FEIPYEKQVVSAHRTPKMMVQFASEARERGINIIIAGAGGAAHLPGM-----------------VASLTTL 82 (163)
T ss_dssp HHHHHHH--TTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHH-----------------HHHHCSS
T ss_pred HHHHHHH--cCCCEEEEEECCcCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHHH-----------------HHhccCC
Confidence 3344444 3899998888876666678888764 5688888887665555443 3447899
Q ss_pred eEEEEeCCCcCCCC
Q 026225 213 MAVAVRRKSKKLGG 226 (241)
Q Consensus 213 pVlvV~~~~~~~~~ 226 (241)
||+-||......+|
T Consensus 83 PVIgVP~~~~~l~G 96 (163)
T 3ors_A 83 PVIGVPIETKSLKG 96 (163)
T ss_dssp CEEEEEECCTTTTT
T ss_pred CEEEeeCCCCCCCC
Confidence 99999977654433
No 40
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=84.83 E-value=2.3 Score=36.27 Aligned_cols=100 Identities=10% Similarity=0.045 Sum_probs=65.3
Q ss_pred HHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEEEEEcCCCchHHHHHH
Q 026225 87 ALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEVAVVEGKEKGPAIVEE 166 (241)
Q Consensus 87 al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~~~~G~~~~~~I~~~ 166 (241)
++-.|--+....+++|.|+-|++. ++..+.+++.++++.+.+. .+.... ++. .+.. .|+..
T Consensus 181 mlllAylL~~nW~A~I~L~~vV~d------------e~a~~~a~~~l~~Lv~~~R---i~a~~~--vv~-~~F~-~il~~ 241 (294)
T 3g40_A 181 ALLIAYKLKSNWKASLSFMTFAPT------------AIQAQAAENFLQSLAELAR---IPNVKM--QVL-RENP-IKSSK 241 (294)
T ss_dssp HHHHHHHHHHHHTCEEEEEEECSS------------HHHHHHHHHHHHHHHHHHT---CCSCEE--EEE-SSCT-TTSSS
T ss_pred HHHHHHHHhhCcCCeEEEEEecCC------------HHHHHHHHHHHHHHHHHhc---CCceEE--Eec-CchH-HHHhh
Confidence 344443444446999999999763 2234555556666655554 345553 223 5455 55555
Q ss_pred HHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeCCCc
Q 026225 167 ARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRKSK 222 (241)
Q Consensus 167 a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~~~ 222 (241)
+ .++||+++|-.....+. ++.+++.++...+++|+..+.
T Consensus 242 s--~~ADL~flGl~~~~df~---------------~~~~~~~~~~ssc~f~~dsg~ 280 (294)
T 3g40_A 242 L--PFASLHIFSLDPNPDLD---------------LARHLMEKAGSSCIFALDSGE 280 (294)
T ss_dssp C--CCCSEEEEECCSSCCHH---------------HHHHHHHHHTSEEEEEECCSC
T ss_pred C--cCCCEEEEcCCCCCcHH---------------HHHHHHHhcCCeEEEEecCch
Confidence 4 57999999986654443 568889999999999998875
No 41
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=84.60 E-value=4.3 Score=31.45 Aligned_cols=69 Identities=6% Similarity=0.052 Sum_probs=47.6
Q ss_pred HHHHHHhhCCCccEEEEEEcCCCchHHHHHHHHH---c-CCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCC
Q 026225 136 LKNMCQQKRPEVQFEVAVVEGKEKGPAIVEEARK---Q-GVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNAD 211 (241)
Q Consensus 136 ~~~~~~~~~~~v~v~~~~~~G~~~~~~I~~~a~~---~-~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~ 211 (241)
+...++. .|++++..+.--+-..+.+.+++++ . +++.||.+.-....+-.+ +.-+++
T Consensus 21 a~~~l~~--~gi~~ev~V~saHR~p~~~~~~~~~a~~~~~~~ViIa~AG~aa~Lpgv-----------------vA~~t~ 81 (159)
T 3rg8_A 21 IASELKT--FGIEYAIRIGSAHKTAEHVVSMLKEYEALDRPKLYITIAGRSNALSGF-----------------VDGFVK 81 (159)
T ss_dssp HHHHHHH--TTCEEEEEECCTTTCHHHHHHHHHHHHTSCSCEEEEEECCSSCCHHHH-----------------HHHHSS
T ss_pred HHHHHHH--cCCCEEEEEEcccCCHHHHHHHHHHhhhcCCCcEEEEECCchhhhHHH-----------------HHhccC
Confidence 3344443 3899998888876666677777753 2 589999887766555443 344789
Q ss_pred ceEEEEeCCCcC
Q 026225 212 CMAVAVRRKSKK 223 (241)
Q Consensus 212 ~pVlvV~~~~~~ 223 (241)
+||+-||.....
T Consensus 82 ~PVIgVP~~~~~ 93 (159)
T 3rg8_A 82 GATIACPPPSDS 93 (159)
T ss_dssp SCEEECCCCCCG
T ss_pred CCEEEeeCCCCC
Confidence 999999876543
No 42
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=83.25 E-value=6.6 Score=31.10 Aligned_cols=64 Identities=16% Similarity=0.323 Sum_probs=46.0
Q ss_pred CccEEEEEEcCCCchHHHHHHHHH---cCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeCCCc
Q 026225 146 EVQFEVAVVEGKEKGPAIVEEARK---QGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRKSK 222 (241)
Q Consensus 146 ~v~v~~~~~~G~~~~~~I~~~a~~---~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~~~ 222 (241)
|++++..+.--+-..+.+.+++++ .+++.||.++-....+-.+ +.-.+++||+-||....
T Consensus 40 Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lpgv-----------------vA~~t~~PVIgVP~~~~ 102 (183)
T 1o4v_A 40 GIDYEITIVSAHRTPDRMFEYAKNAEERGIEVIIAGAGGAAHLPGM-----------------VASITHLPVIGVPVKTS 102 (183)
T ss_dssp TCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHH-----------------HHHHCSSCEEEEEECCT
T ss_pred CCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCcccccHHH-----------------HHhccCCCEEEeeCCCC
Confidence 899998888866555577788764 4688888887665555443 34478999999998765
Q ss_pred CCCC
Q 026225 223 KLGG 226 (241)
Q Consensus 223 ~~~~ 226 (241)
..+|
T Consensus 103 ~l~G 106 (183)
T 1o4v_A 103 TLNG 106 (183)
T ss_dssp TTTT
T ss_pred CCCc
Confidence 4443
No 43
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=83.17 E-value=5 Score=31.54 Aligned_cols=61 Identities=15% Similarity=0.189 Sum_probs=43.8
Q ss_pred CccEEEEEEcCCCchHHHHHHH---HHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeCCCc
Q 026225 146 EVQFEVAVVEGKEKGPAIVEEA---RKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRKSK 222 (241)
Q Consensus 146 ~v~v~~~~~~G~~~~~~I~~~a---~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~~~ 222 (241)
|++++..+.--+-..+.+.+++ ++.+++.||.+.-....+-.+ +.-++++||+-||....
T Consensus 34 gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpgv-----------------vA~~t~~PVIgVP~~~~ 96 (174)
T 3lp6_A 34 DIPAEVRVVSAHRTPEAMFSYARGAAARGLEVIIAGAGGAAHLPGM-----------------VAAATPLPVIGVPVPLG 96 (174)
T ss_dssp TCCEEEEECCTTTCHHHHHHHHHHHHHHTCCEEEEEEESSCCHHHH-----------------HHHHCSSCEEEEEECCS
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEecCchhhhHHH-----------------HHhccCCCEEEeeCCCC
Confidence 8999988888665555677765 456889888887665555443 44478999999987754
Q ss_pred C
Q 026225 223 K 223 (241)
Q Consensus 223 ~ 223 (241)
+
T Consensus 97 ~ 97 (174)
T 3lp6_A 97 R 97 (174)
T ss_dssp S
T ss_pred C
Confidence 3
No 44
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group}
Probab=82.78 E-value=5 Score=36.90 Aligned_cols=97 Identities=10% Similarity=0.080 Sum_probs=64.6
Q ss_pred CEEEEee--cCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccE
Q 026225 72 RKIMIVV--DSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQF 149 (241)
Q Consensus 72 ~~ILVav--D~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v 149 (241)
..+|+=. |.--....||..|++.+...+..|..|+|+++..... ...........+-|..+.+.+.+. |++
T Consensus 38 ~~vlvWFRrDLRl~DN~AL~~A~~~a~~~~~pVl~vfildp~~~~~----~~~~~r~~FL~~sL~dL~~~L~~l--G~~- 110 (506)
T 3umv_A 38 GPVVYWMLRDQRLADNWALLHAAGLAAASASPLAVAFALFPRPFLL----SARRRQLGFLLRGLRRLAADAAAR--HLP- 110 (506)
T ss_dssp SCEEEEESSCCCSTTCHHHHHHHHHHHHHTCCEEEEEECCCTTCGG----GCCHHHHHHHHHHHHHHHHHHHHT--TCC-
T ss_pred CEEEEEeCCCcchhhcHHHHHHHHhhhhcCCCEEEEEeccchhhcc----CCCHHHHHHHHHHHHHHHHHHHHc--CCc-
Confidence 3455544 5555556788999988876677899999998763111 111222334455566666666653 444
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCcEEEEc
Q 026225 150 EVAVVEGKEKGPAIVEEARKQGVALLVLG 178 (241)
Q Consensus 150 ~~~~~~G~~~~~~I~~~a~~~~~dllVmG 178 (241)
..+..|++.. . .+++++.+++.|+.-
T Consensus 111 -L~v~~G~p~~-v-~~L~~~~~a~~V~~d 136 (506)
T 3umv_A 111 -FFLFTGGPAE-I-PALVQRLGASTLVAD 136 (506)
T ss_dssp -EEEESSCTTH-H-HHHHHHTTCSEEEEC
T ss_pred -eEEEecChHH-H-HHHHHhcCCCEEEec
Confidence 5667899876 6 999999999999973
No 45
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=79.25 E-value=7.8 Score=33.38 Aligned_cols=96 Identities=7% Similarity=0.046 Sum_probs=59.5
Q ss_pred CCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEE
Q 026225 71 GRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFE 150 (241)
Q Consensus 71 ~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~ 150 (241)
+.+|+|++.+..+|.-+|..+.......+..|.++|+.....+ .+ .++-..+.++.+ |+++.
T Consensus 46 ~~~ivVa~SGGkDS~vLL~Ll~~~~~~~~~~i~vv~vDtg~~~-------------~e---t~~~v~~~~~~~--gi~l~ 107 (325)
T 1zun_A 46 FDNPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTRWKF-------------QE---MYRFRDQMVEEM--GLDLI 107 (325)
T ss_dssp CSSEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEECCSCCC-------------HH---HHHHHHHHHHTT--TCCEE
T ss_pred CCCEEEEEcChHHHHHHHHHHHHhccccCCCEEEEEEECCCCC-------------HH---HHHHHHHHHHHc--CCCEE
Confidence 5689999999999998888887776544567888998544321 11 223333445443 66655
Q ss_pred EEEEc-----CCCc-------------hHHHHHHHHHcCCcEEEEccCCCCc
Q 026225 151 VAVVE-----GKEK-------------GPAIVEEARKQGVALLVLGQKKRST 184 (241)
Q Consensus 151 ~~~~~-----G~~~-------------~~~I~~~a~~~~~dllVmG~~~~~~ 184 (241)
+.... |.+. -..+.+.+++++++.++.|.+....
T Consensus 108 v~~~~~~~~~G~~~~~~~~~~cc~~~K~~pL~~~l~e~g~~~i~tG~R~Des 159 (325)
T 1zun_A 108 THINPDGVAQGINPFTHGSAKHTDIMKTEGLKQALDKHGFDAAFGGARRDEE 159 (325)
T ss_dssp EECC--------------CCHHHHHHTHHHHHHHHHHHTCSEEECCCCTTSS
T ss_pred EEeCchHHhcCCCccccChHHHHHHHHHHHHHHHHHHcCCCEEEEecccchh
Confidence 44321 2110 0146667778899999999876533
No 46
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=76.77 E-value=26 Score=31.75 Aligned_cols=37 Identities=16% Similarity=0.148 Sum_probs=31.2
Q ss_pred CCCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcC
Q 026225 70 SGRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKP 110 (241)
Q Consensus 70 ~~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~ 110 (241)
..++|+|++.+.-+|.-++.|+.+. +.+|+.+|+...
T Consensus 9 ~~~KVvVA~SGGlDSSvll~~L~e~----G~eViavtvd~G 45 (455)
T 1k92_A 9 VGQRIGIAFSGGLDTSAALLWMRQK----GAVPYAYTANLG 45 (455)
T ss_dssp TTSEEEEECCSSHHHHHHHHHHHHT----TCEEEEEEEECC
T ss_pred CCCeEEEEEcChHHHHHHHHHHHHc----CCEEEEEEEEcC
Confidence 3579999999999999999998662 789999999764
No 47
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron}
Probab=76.43 E-value=9.2 Score=30.93 Aligned_cols=87 Identities=6% Similarity=-0.021 Sum_probs=57.8
Q ss_pred CCEEEEeecC-----CHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCC
Q 026225 71 GRKIMIVVDS-----SNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRP 145 (241)
Q Consensus 71 ~~~ILVavD~-----s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 145 (241)
++.|||-++- .+.+..+|..|.+++.+.+.+++.|-+-+... ..+++ ... +
T Consensus 3 m~~ilV~~E~~~g~l~~~s~ell~~A~~La~~~g~~v~av~~G~~~~--------------~~~~~-------~~~-~-- 58 (217)
T 3ih5_A 3 ANNLFVYCEIEEGIVADVSLELLTKGRSLANELNCQLEAVVAGTGLK--------------EIEKQ-------ILP-Y-- 58 (217)
T ss_dssp CCCEEEECCEETTEECHHHHHHHHHHHHHHHHHTCCEEEEEEESCCT--------------TTHHH-------HGG-G--
T ss_pred cccEEEEEECcCCEECHHHHHHHHHHHHHHHhcCCeEEEEEECCCHH--------------HHHHH-------HHh-c--
Confidence 3568888874 47789999999999988888888887744211 11111 111 1
Q ss_pred CccEEEEEEc----C---CCchHHHHHHHHHcCCcEEEEccCC
Q 026225 146 EVQFEVAVVE----G---KEKGPAIVEEARKQGVALLVLGQKK 181 (241)
Q Consensus 146 ~v~v~~~~~~----G---~~~~~~I~~~a~~~~~dllVmG~~~ 181 (241)
|++--+.+-. + .+..+.|.+.++++++|+|++|...
T Consensus 59 Gad~v~~v~~~~~~~~~~~~~a~~l~~~i~~~~p~~Vl~g~t~ 101 (217)
T 3ih5_A 59 GVDKLHVFDAEGLYPYTSLPHTSILVNLFKEEQPQICLMGATV 101 (217)
T ss_dssp TCSEEEEEECGGGSSCCHHHHHHHHHHHHHHHCCSEEEEECSH
T ss_pred CCCEEEEecCcccccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 5554444432 1 1245578899999999999999754
No 48
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=75.02 E-value=21 Score=29.77 Aligned_cols=83 Identities=19% Similarity=0.169 Sum_probs=52.1
Q ss_pred eecCCHHHHHHHHHHHHhhccCCC--EEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEEEEE
Q 026225 77 VVDSSNEAKGALQWSLTHTVQSQD--KVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEVAVV 154 (241)
Q Consensus 77 avD~s~~s~~al~~A~~~a~~~~~--~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~~~ 154 (241)
..-.++.+..||+.|+++..+.+. +|+.|.+=++ .+++.+..+ +.. |++--+.+.
T Consensus 32 ~~~lnp~d~~ale~A~~Lke~~g~~~~V~av~~G~~-----------------~~~~~lr~a---la~---GaD~vi~v~ 88 (264)
T 1o97_C 32 MYDLNEWDDFSLEEAMKIKESSDTDVEVVVVSVGPD-----------------RVDESLRKC---LAK---GADRAVRVW 88 (264)
T ss_dssp EEEECHHHHHHHHHHHHHHHHCSSCCEEEEEEESCG-----------------GGHHHHHHH---HHT---TCSEEEEEC
T ss_pred CCccCHHHHHHHHHHHHHHHhcCCCceEEEEEeCch-----------------hHHHHHHHH---Hhc---CCCEEEEEc
Confidence 334568889999999999877666 8888877321 112222222 211 555444443
Q ss_pred c----CC---CchHHHHHHHHHcCCcEEEEccCCC
Q 026225 155 E----GK---EKGPAIVEEARKQGVALLVLGQKKR 182 (241)
Q Consensus 155 ~----G~---~~~~~I~~~a~~~~~dllVmG~~~~ 182 (241)
. +. .....|.+.+++.++|+|++|....
T Consensus 89 d~~~~~~~~~~~a~~La~~i~~~~~dlVl~G~~s~ 123 (264)
T 1o97_C 89 DDAAEGSDAIVVGRILTEVIKKEAPDMVFAGVQSS 123 (264)
T ss_dssp CGGGTTCCHHHHHHHHHHHHHHHCCSEEEEESCCT
T ss_pred CcccccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 2 11 2344677788888999999998774
No 49
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Probab=73.02 E-value=17 Score=33.61 Aligned_cols=129 Identities=12% Similarity=0.047 Sum_probs=76.9
Q ss_pred EEEEee--cCCHHHHHHHHHHHHhhcc--CCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCcc
Q 026225 73 KIMIVV--DSSNEAKGALQWSLTHTVQ--SQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQ 148 (241)
Q Consensus 73 ~ILVav--D~s~~s~~al~~A~~~a~~--~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~ 148 (241)
.||+=+ |.--....||..|++.+.. .+..|..|+++++..... .........-..+-|..+.+.+... |++
T Consensus 30 ~vl~WfrrDLRl~DN~aL~~A~~~~~~~~~~~pv~~vfi~dp~~~~~---~~~~~~r~~Fl~~sL~~L~~~L~~~--G~~ 104 (543)
T 2wq7_A 30 TLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDW---MQVGANRWRFLQQTLEDLDNQLRKL--NSR 104 (543)
T ss_dssp EEEEEESSCCCSTTCHHHHHHHHHHHHSTTTEEEEEEEEECTTGGGC---TTSCHHHHHHHHHHHHHHHHHHHHT--TCC
T ss_pred eEEEEeCCCcCcchHHHHHHHHHhCccccCCCeEEEEEEECchhhcc---cCCCHHHHHHHHHHHHHHHHHHHHC--CCe
Confidence 335444 5544555678888877644 355699999998754211 0111222234445566666666653 555
Q ss_pred EEEEEEcCCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeCC
Q 026225 149 FEVAVVEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRK 220 (241)
Q Consensus 149 v~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~ 220 (241)
+ .+..|++.+ .|.+++++.+++.|+.-.. ......-. -......+....|++..+...
T Consensus 105 L--~v~~g~~~~-~l~~l~~~~~~~~v~~~~~-~~p~~~~r----------d~~v~~~~~~~gi~~~~~~~~ 162 (543)
T 2wq7_A 105 L--FVVRGKPAE-VFPRIFKSWRVEMLTFETD-IEPYSVTR----------DAAVQKLAKAEGVRVETHCSH 162 (543)
T ss_dssp C--EEEESCHHH-HHHHHHHHTTEEEEEEECC-CSHHHHHH----------HHHHHHHHHHHTCEEEEECCS
T ss_pred E--EEEeCCHHH-HHHHHHHHcCCCEEEEecC-cCHHHHHH----------HHHHHHHHHHcCCEEEEecCC
Confidence 4 446788665 9999999999999988643 23332221 123445556668888877544
No 50
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Probab=72.99 E-value=20 Score=32.96 Aligned_cols=129 Identities=12% Similarity=0.114 Sum_probs=72.7
Q ss_pred CEEEEee--cCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCC---chhhHhhhhHHHHHHHHHHHHHHHhhCCC
Q 026225 72 RKIMIVV--DSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQAT---GEESGKQRAPRGYEFVHSLKNMCQQKRPE 146 (241)
Q Consensus 72 ~~ILVav--D~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 146 (241)
+.+|+=+ |.--....||..|++. +..|..|+++++....... .............+-|..+.+.+.+. |
T Consensus 40 ~~~l~WfrrDLRl~DN~AL~~A~~~----~~~v~~vfi~dp~~~~~~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~--G 113 (525)
T 2j4d_A 40 GVTILWFRNDLRVLDNDALYKAWSS----SDTILPVYCLDPRLFHTTHFFNFPKTGALRGGFLMECLVDLRKNLMKR--G 113 (525)
T ss_dssp CEEEEEESSCCCSTTCHHHHHHHHT----CSEEEEEEEECGGGGSBCTTTCCBSSCHHHHHHHHHHHHHHHHHHHHT--T
T ss_pred CeEEEEeCCCcCcchhHHHHHHHhc----CCcEEEEEEECchhhcccccccCCCCCHHHHHHHHHHHHHHHHHHHHc--C
Confidence 3445444 5444445577777653 4579999999875321100 01112222334445566666666653 5
Q ss_pred ccEEEEEEcCCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCC--ceEEEEeCC
Q 026225 147 VQFEVAVVEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNAD--CMAVAVRRK 220 (241)
Q Consensus 147 v~v~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~--~pVlvV~~~ 220 (241)
+++ .+..|++.+ .|.+++++.+++.|+.-..- .....-.- - .....+.... |++..+...
T Consensus 114 ~~L--~v~~g~~~~-~l~~l~~~~~~~~V~~~~~~-~p~~~~rd---------~-~v~~~l~~~gv~i~~~~~~~~ 175 (525)
T 2j4d_A 114 LNL--LIRSGKPEE-ILPSLAKDFGARTVFAHKET-CSEEVDVE---------R-LVNQGLKRVGNSTKLELIWGS 175 (525)
T ss_dssp CCC--EEEESCHHH-HHHHHHHHHTCSEEEEECCC-SHHHHHHH---------H-HHHHHHHTTCSSCEEEEECCS
T ss_pred CeE--EEEeCCHHH-HHHHHHHHcCCCEEEEeccC-CHHHHHHH---------H-HHHHHHHhcCCceEEEEecCC
Confidence 554 446788765 99999999999999986433 23322221 2 3334444455 788777544
No 51
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=70.99 E-value=5.5 Score=28.12 Aligned_cols=50 Identities=20% Similarity=0.173 Sum_probs=33.4
Q ss_pred hHHHHHHHHHcCCcEEEEccC-----CCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeCC
Q 026225 160 GPAIVEEARKQGVALLVLGQK-----KRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRK 220 (241)
Q Consensus 160 ~~~I~~~a~~~~~dllVmG~~-----~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~ 220 (241)
.+.|.+++++++++.||+|-- ..+...... -.+++.+-.. +.||..+-.+
T Consensus 40 ~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~----------~~f~~~L~~~-~lpV~~~DER 94 (98)
T 1iv0_A 40 VEALLDFVRREGLGKLVVGLPLRTDLKESAQAGKV----------LPLVEALRAR-GVEVELWDER 94 (98)
T ss_dssp HHHHHHHHHHHTCCEEEEECCCCCCSSSCCCSSTT----------HHHHHHHHHT-TCEEEEECCS
T ss_pred HHHHHHHHHHcCCCEEEEeeccCCCCCcCHHHHHH----------HHHHHHHhcC-CCCEEEECCC
Confidence 347889999999999999932 112222111 2356777777 8999988654
No 52
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=70.92 E-value=19 Score=32.69 Aligned_cols=123 Identities=15% Similarity=0.056 Sum_probs=70.4
Q ss_pred cCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCC--CchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEEEEEcC
Q 026225 79 DSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQA--TGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEVAVVEG 156 (241)
Q Consensus 79 D~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~~~~G 156 (241)
|.--....||..|++ .++.+..|+++++...... ...........-..+-|..+.+.+.+. |+++ .+..|
T Consensus 15 DLRl~DN~aL~~A~~----~~~~v~~vfi~dp~~~~~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~--G~~L--~v~~g 86 (489)
T 1np7_A 15 DLRLHDHEPLHRALK----SGLAITAVYCYDPRQFAQTHQGFAKTGPWRSNFLQQSVQNLAESLQKV--GNKL--LVTTG 86 (489)
T ss_dssp CCCSTTCHHHHHHHH----TTSEEEEEEEECGGGGSBCTTSCBSSCHHHHHHHHHHHHHHHHHHHHT--TCCE--EEEES
T ss_pred CCCcchHHHHHHHHh----cCCCEEEEEEECchhhcccccccCCCCHHHHHHHHHHHHHHHHHHHHC--CCcE--EEEEC
Confidence 444444557777765 3457889999887532110 000111222234455566666666653 5555 45678
Q ss_pred CCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeCCC
Q 026225 157 KEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRKS 221 (241)
Q Consensus 157 ~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~~ 221 (241)
++.+ .|.+++++.+++.|+.-..- .....-. -..+...+....|++..+....
T Consensus 87 ~~~~-~l~~l~~~~~~~~V~~~~~~-~~~~~~r----------d~~v~~~l~~~gi~~~~~~~~~ 139 (489)
T 1np7_A 87 LPEQ-VIPQIAKQINAKTIYYHREV-TQEELDV----------ERNLVKQLTILGIEAKGYWGST 139 (489)
T ss_dssp CHHH-HHHHHHHHTTEEEEEEECCC-SHHHHHH----------HHHHHHHHHHHTCEEEEECCSS
T ss_pred CHHH-HHHHHHHHcCCCEEEEeccc-CHHHHHH----------HHHHHHHHHhcCCeEEEecCCe
Confidence 8765 99999999999998886433 3332221 1133444455678888775543
No 53
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=69.61 E-value=32 Score=30.05 Aligned_cols=97 Identities=10% Similarity=0.105 Sum_probs=58.1
Q ss_pred CCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEE
Q 026225 71 GRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFE 150 (241)
Q Consensus 71 ~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~ 150 (241)
.++|+|++.+..+|.-++..+.+ .+-+|..+|+....... .... -...+.++.++..|+.. |++..
T Consensus 9 ~~kVlVa~SGGvDSsv~a~lL~~----~G~~V~~v~~~~~~~~~---~~~~-----c~~~~d~~~a~~va~~l--GIp~~ 74 (376)
T 2hma_A 9 KTRVVVGMSGGVDSSVTALLLKE----QGYDVIGIFMKNWDDTD---ENGV-----CTATEDYKDVVAVADQI--GIPYY 74 (376)
T ss_dssp GSEEEEECCSSHHHHHHHHHHHH----TTCEEEEEEEECCCCCC------------CHHHHHHHHHHHHHHHH--TCCEE
T ss_pred CCeEEEEEeCHHHHHHHHHHHHH----cCCcEEEEEEECCCccc---cccc-----CCCHHHHHHHHHHHHHh--CCcEE
Confidence 46899999999998877666554 36789999986532200 0000 00112234455555554 66665
Q ss_pred EEEEc-----------------CCC-----------chHHHHHHHHHcCCcEEEEccCC
Q 026225 151 VAVVE-----------------GKE-----------KGPAIVEEARKQGVALLVLGQKK 181 (241)
Q Consensus 151 ~~~~~-----------------G~~-----------~~~~I~~~a~~~~~dllVmG~~~ 181 (241)
+.-.. |.. .-..+.++|++.++|.|+.|...
T Consensus 75 vv~~~~~~~~~v~~~~l~~y~~G~tpnpc~~C~r~ik~~~l~~~A~~~G~d~IatGH~a 133 (376)
T 2hma_A 75 SVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAITLGADYVATGHYA 133 (376)
T ss_dssp EEECHHHHHHHTHHHHHHHHHTTCCCCHHHHHHHHTTTTHHHHHHHTTTCSEEECCCSE
T ss_pred EEeChHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHhCCCCEEEECcch
Confidence 54432 110 12357888889999999999753
No 54
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=69.38 E-value=28 Score=31.03 Aligned_cols=36 Identities=8% Similarity=0.109 Sum_probs=29.8
Q ss_pred CCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcC
Q 026225 71 GRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKP 110 (241)
Q Consensus 71 ~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~ 110 (241)
.++|+|++.+.-+|.-++.|+.+. +.+|..+|+...
T Consensus 5 ~~kVvvalSGGlDSsvll~lL~e~----G~eV~av~vd~g 40 (413)
T 2nz2_A 5 KGSVVLAYSGGLDTSCILVWLKEQ----GYDVIAYLANIG 40 (413)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHHT----TEEEEEEEEESS
T ss_pred CCeEEEEEcChHHHHHHHHHHHHc----CCEEEEEEEECC
Confidence 468999999999999888888663 678999999754
No 55
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=69.25 E-value=35 Score=26.86 Aligned_cols=90 Identities=6% Similarity=0.043 Sum_probs=54.8
Q ss_pred CEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEE
Q 026225 72 RKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEV 151 (241)
Q Consensus 72 ~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~ 151 (241)
.+|+|++.+..+|.-+|..+.+.. .++.++|+...... .+ ..+.+++.++.. |+++.+
T Consensus 45 ~~v~Va~SGGkDS~vLL~ll~~~~----~~v~~v~vd~g~~~-------------~e---~~~~v~~~~~~~--gi~~~v 102 (215)
T 1sur_A 45 GEYVLSSSFGIQAAVSLHLVNQIR----PDIPVILTDTGYLF-------------PE---TYRFIDELTDKL--KLNLKV 102 (215)
T ss_dssp SEEEEECCCCTTHHHHHHHHHHHS----TTCEEEEEECSCBC-------------HH---HHHHHHHHHHHT--TCEEEE
T ss_pred CCEEEEecCCHHHHHHHHHHHHhC----CCCeEEEeeCCCCC-------------HH---HHHHHHHHHHHh--CCcEEE
Confidence 589999999999987777766653 46888888654220 11 123344455543 677665
Q ss_pred EEEcCC---------C-c----h-----------HHHHHHHHHcCCcEEEEccCCCC
Q 026225 152 AVVEGK---------E-K----G-----------PAIVEEARKQGVALLVLGQKKRS 183 (241)
Q Consensus 152 ~~~~G~---------~-~----~-----------~~I~~~a~~~~~dllVmG~~~~~ 183 (241)
.-..-. . . . ..+.+.+++++++.+++|.+...
T Consensus 103 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~K~~~l~~~~~~~~~~~i~~G~r~dd 159 (215)
T 1sur_A 103 YRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQ 159 (215)
T ss_dssp EECSSCHHHHHHHHCCGGGSHHHHHHHHHHHHTHHHHHHHHHHTTEEEEECCCCTTS
T ss_pred EeCCCCHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHhcCCceEEEEeehhh
Confidence 543211 0 0 0 02445667788889999987643
No 56
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=66.95 E-value=53 Score=27.09 Aligned_cols=80 Identities=15% Similarity=0.104 Sum_probs=51.3
Q ss_pred CCHHHHHHHHHHHHhhccCCC--EEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEEEEE-c-
Q 026225 80 SSNEAKGALQWSLTHTVQSQD--KVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEVAVV-E- 155 (241)
Q Consensus 80 ~s~~s~~al~~A~~~a~~~~~--~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~~~-~- 155 (241)
.++.+..||+.|+++..+ +. +|+.+.+=++. +++.+..+..+ |.+--+.+. .
T Consensus 38 lnp~d~~Ale~A~~Lke~-g~~~~V~av~~G~~~-----------------a~~~lr~ala~------GaD~vi~v~~d~ 93 (255)
T 1efv_B 38 MNPFCEIAVEEAVRLKEK-KLVKEVIAVSCGPAQ-----------------CQETIRTALAM------GADRGIHVEVPP 93 (255)
T ss_dssp ECHHHHHHHHHHHHHHHT-TSCSEEEEEEEESTT-----------------HHHHHHHHHHH------TCSEEEEEECCH
T ss_pred CCHHHHHHHHHHHHHHhc-CCCceEEEEEeCChh-----------------HHHHHHHHHhc------CCCEEEEEecCh
Confidence 467888999999999876 65 88888775321 22223332221 555444444 2
Q ss_pred ----CC---CchHHHHHHHHHcCCcEEEEccCCCC
Q 026225 156 ----GK---EKGPAIVEEARKQGVALLVLGQKKRS 183 (241)
Q Consensus 156 ----G~---~~~~~I~~~a~~~~~dllVmG~~~~~ 183 (241)
+. ...+.|.+.+++.++|+|++|.....
T Consensus 94 ~~~~~~~~~~~A~~La~~i~~~~~dlVl~G~~s~d 128 (255)
T 1efv_B 94 AEAERLGPLQVARVLAKLAEKEKVDLVLLGKQAID 128 (255)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHTCSEEEEESCCTT
T ss_pred hhcccCCHHHHHHHHHHHHHhcCCCEEEEeCcccC
Confidence 22 23446777888889999999987753
No 57
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=66.93 E-value=44 Score=27.42 Aligned_cols=39 Identities=3% Similarity=-0.141 Sum_probs=29.6
Q ss_pred CCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcC
Q 026225 71 GRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKP 110 (241)
Q Consensus 71 ~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~ 110 (241)
+.+|+|++.+..+|.-.|..+.+.... +..+.++|+...
T Consensus 41 ~~~v~va~SGGkDS~vLL~ll~~~~~~-~~~i~vv~iDtg 79 (261)
T 2oq2_A 41 FPHLFQTTAFGLTGLVTIDMLSKLSEK-YYMPELLFIDTL 79 (261)
T ss_dssp CSSEEEECCCCHHHHHHHHHHHHHTTT-SCCCEEEEECCS
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhCcc-CCCeeEEEecCC
Confidence 457999999999998788777776543 457888888543
No 58
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=65.53 E-value=58 Score=28.48 Aligned_cols=100 Identities=13% Similarity=0.181 Sum_probs=58.6
Q ss_pred CCCCCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCc
Q 026225 68 VSSGRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEV 147 (241)
Q Consensus 68 ~~~~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v 147 (241)
....++|+|++.+.-+|.-++..+.+ .+-+|..+|+...... ....+ -...+.++.++..|+.. |+
T Consensus 14 ~~~~~kVvVa~SGGvDSsv~a~lL~~----~G~~V~~v~~~~~~~~---~~~~~-----~~s~~d~~~a~~va~~L--GI 79 (380)
T 2der_A 14 SETAKKVIVGMSGGVDSSVSAWLLQQ----QGYQVEGLFMKNWEED---DGEEY-----CTAAADLADAQAVCDKL--GI 79 (380)
T ss_dssp ---CCEEEEECCSCSTTHHHHHHHHT----TCCEEEEEEEECCCCC---SHHHH-----HHHHHHHHHHHHHHHHH--TC
T ss_pred CCCCCEEEEEEEChHHHHHHHHHHHH----cCCeEEEEEEEcCccc---cccCC-----CCCHHHHHHHHHHHHHc--CC
Confidence 34567999999998888766655543 3778999998642210 00000 01122345556666654 67
Q ss_pred cEEEEEEc-----------------CCC-----------chHHHHHHHHH-cCCcEEEEccCC
Q 026225 148 QFEVAVVE-----------------GKE-----------KGPAIVEEARK-QGVALLVLGQKK 181 (241)
Q Consensus 148 ~v~~~~~~-----------------G~~-----------~~~~I~~~a~~-~~~dllVmG~~~ 181 (241)
+..+.-.. |.. .-..+.++|.+ .++|.|+.|...
T Consensus 80 p~~vvd~~~~f~~~v~~~~~~ey~~G~tpnpc~~Cnr~ik~~~l~~~A~~~~Gad~IatGH~a 142 (380)
T 2der_A 80 ELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIATGHYV 142 (380)
T ss_dssp CEEEEECHHHHHHHTHHHHHHHHHTTCCCCHHHHHHHHTTTTHHHHHHHHTTCCSEEECCCSC
T ss_pred cEEEEeCcHHHHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHHHHHHHhhcCCCEEEEcccc
Confidence 76655432 210 12356778888 999999999644
No 59
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Probab=65.17 E-value=15 Score=33.24 Aligned_cols=119 Identities=13% Similarity=0.118 Sum_probs=68.3
Q ss_pred cCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEEEEEcCCC
Q 026225 79 DSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEVAVVEGKE 158 (241)
Q Consensus 79 D~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~~~~G~~ 158 (241)
|.--....||..|++.. ..|..|+++++..... .........-..+-|..+.+.+... |+++ .+..|++
T Consensus 12 DLRl~Dn~aL~~A~~~~----~~v~~vfi~dp~~~~~---~~~~~~r~~fl~~sL~~L~~~L~~~--G~~L--~v~~g~~ 80 (484)
T 1owl_A 12 DLRLSDNIGLAAARAQS----AQLIGLFCLDPQILQS---ADMAPARVAYLQGCLQELQQRYQQA--GSRL--LLLQGDP 80 (484)
T ss_dssp CCCSSSCHHHHHHHHHC----SCEEEEEEECHHHHTC---TTCCHHHHHHHHHHHHHHHHHHHHH--TSCE--EEEESCH
T ss_pred CCCcchhHHHHHHHhcC----CCEEEEEEEcchhhcC---CCCCHHHHHHHHHHHHHHHHHHHHC--CCeE--EEEeCCH
Confidence 33333345677776532 3688999988643111 0111122233445556666666654 5655 4456887
Q ss_pred chHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeCC
Q 026225 159 KGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRK 220 (241)
Q Consensus 159 ~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~ 220 (241)
.+ .|.+++++.+++.|+.-..- .....-. -..+...+....|++..+...
T Consensus 81 ~~-~l~~l~~~~~~~~v~~~~~~-~p~~~~r----------d~~v~~~l~~~gi~~~~~~~~ 130 (484)
T 1owl_A 81 QH-LIPQLAQQLQAEAVYWNQDI-EPYGRDR----------DGQVAAALKTAGIRAVQLWDQ 130 (484)
T ss_dssp HH-HHHHHHHHTTCSEEEEECCC-SHHHHHH----------HHHHHHHHHHTTCEEEEECCS
T ss_pred HH-HHHHHHHHcCCCEEEEeccC-ChhHHHH----------HHHHHHHHHHcCcEEEEecCC
Confidence 65 99999999999999985433 2222221 113344455568888887544
No 60
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=63.78 E-value=33 Score=27.62 Aligned_cols=96 Identities=15% Similarity=0.110 Sum_probs=53.6
Q ss_pred CCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEE
Q 026225 71 GRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFE 150 (241)
Q Consensus 71 ~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~ 150 (241)
..||.|-+.++.....++-.+..- ...+.+|.+|-...+.. .. .+.+++. |+++.
T Consensus 8 ~~ri~vl~SG~gsnl~all~~~~~-~~~~~~I~~Vis~~~~a---------------~~-------l~~A~~~--gIp~~ 62 (215)
T 3kcq_A 8 ELRVGVLISGRGSNLEALAKAFST-EESSVVISCVISNNAEA---------------RG-------LLIAQSY--GIPTF 62 (215)
T ss_dssp CEEEEEEESSCCHHHHHHHHHTCC-C-CSEEEEEEEESCTTC---------------TH-------HHHHHHT--TCCEE
T ss_pred CCEEEEEEECCcHHHHHHHHHHHc-CCCCcEEEEEEeCCcch---------------HH-------HHHHHHc--CCCEE
Confidence 468888888876666666555421 11234555554433221 00 1222322 67765
Q ss_pred EEEEcCCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhh
Q 026225 151 VAVVEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMW 192 (241)
Q Consensus 151 ~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~ 192 (241)
..-...- ..+.+++..+++++|++|+..-.+=--..++-.|
T Consensus 63 ~~~~~~~-~~~~~~~~L~~~~~Dlivlagy~~IL~~~~l~~~ 103 (215)
T 3kcq_A 63 VVKRKPL-DIEHISTVLREHDVDLVCLAGFMSILPEKFVTDW 103 (215)
T ss_dssp ECCBTTB-CHHHHHHHHHHTTCSEEEESSCCSCCCHHHHHHT
T ss_pred EeCcccC-ChHHHHHHHHHhCCCEEEEeCCceEeCHHHHhhc
Confidence 4322111 2358999999999999999877654444454444
No 61
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=61.80 E-value=77 Score=28.70 Aligned_cols=87 Identities=14% Similarity=0.127 Sum_probs=54.1
Q ss_pred CEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEE
Q 026225 72 RKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEV 151 (241)
Q Consensus 72 ~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~ 151 (241)
++|+|++.+..+|.-++..+.+. +.++..+|+...... . .+ .+.+++.++.. |+++.+
T Consensus 210 ~kvvvalSGGvDSsvla~ll~~~----g~~v~av~vd~g~~~-~-----------~e----~~~v~~~~~~l--gi~~~v 267 (503)
T 2ywb_A 210 DRVLLAVSGGVDSSTLALLLAKA----GVDHLAVFVDHGLLR-L-----------GE----REEVEGALRAL--GVNLLV 267 (503)
T ss_dssp SEEEEEECSSHHHHHHHHHHHHH----TCEEEEEEEECSCSC-T-----------TH----HHHHHHHHHHT--TCCEEE
T ss_pred ccEEEEecCCcchHHHHHHHHHc----CCeEEEEEEeCCCCC-h-----------HH----HHHHHHHHHHh--CCCEEE
Confidence 79999999999998777766554 689999998654220 0 01 12333444442 666655
Q ss_pred EEEc--------CCCch------------HHHHHHHHHc-CCcEEEEccC
Q 026225 152 AVVE--------GKEKG------------PAIVEEARKQ-GVALLVLGQK 180 (241)
Q Consensus 152 ~~~~--------G~~~~------------~~I~~~a~~~-~~dllVmG~~ 180 (241)
.-.. |.... ..+.++|++. +++.|+.|++
T Consensus 268 v~~~~~f~~~l~g~~~pe~~r~~~~~~~~~~l~~~A~~~~g~~~la~G~~ 317 (503)
T 2ywb_A 268 VDAKERFLKALKGVEDPEEKRKIIGREFVAAFSQVARERGPFRFLAQGTL 317 (503)
T ss_dssp EECHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHCCCSEEECCCC
T ss_pred EECcHHHHHhhcCCCChHHHhhhhhHHHHHHHHHHHHhcCCCCEEEECCc
Confidence 5432 21111 1344567777 8999999985
No 62
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Probab=61.60 E-value=12 Score=33.26 Aligned_cols=82 Identities=23% Similarity=0.196 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEEEEEcCCCchHH
Q 026225 83 EAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEVAVVEGKEKGPA 162 (241)
Q Consensus 83 ~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~~~~G~~~~~~ 162 (241)
....||..|.+. + .|..|+++++.... . ......-..+-|..+.+.+.+. |+++ .+..|++.+ .
T Consensus 15 ~Dn~aL~~A~~~----~-~v~~vfi~d~~~~~-----~-~~~r~~fl~~sL~~l~~~L~~~--g~~l--~~~~g~~~~-~ 78 (420)
T 2j07_A 15 HDHPALLEALAR----G-PVVGLVVLDPNNLK-----T-TPRRRAWFLENVRALREAYRAR--GGAL--WVLEGLPWE-K 78 (420)
T ss_dssp TTCHHHHHHHTT----S-CEEEEEEECHHHHS-----S-CHHHHHHHHHHHHHHHHHHHHT--TCCE--EEEESCHHH-H
T ss_pred cccHHHHHHHhC----C-CEEEEEEECCcccc-----C-CHHHHHHHHHHHHHHHHHHHHC--CCeE--EEEeCCHHH-H
Confidence 334566666542 3 68889998864311 1 1122233445556666666653 5655 446688765 9
Q ss_pred HHHHHHHcCCcEEEEccC
Q 026225 163 IVEEARKQGVALLVLGQK 180 (241)
Q Consensus 163 I~~~a~~~~~dllVmG~~ 180 (241)
|.+++++.+++.|+.-..
T Consensus 79 l~~l~~~~~~~~v~~~~~ 96 (420)
T 2j07_A 79 VPEAARRLKAKAVYALTS 96 (420)
T ss_dssp HHHHHHHTTCSEEEEECC
T ss_pred HHHHHHHcCCCEEEEecc
Confidence 999999999999998543
No 63
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=61.49 E-value=58 Score=26.01 Aligned_cols=96 Identities=14% Similarity=0.140 Sum_probs=54.5
Q ss_pred CEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEE
Q 026225 72 RKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEV 151 (241)
Q Consensus 72 ~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~ 151 (241)
.||.|-+.++.....++-.+... ...+.+|.+|-...+.. .. .+.+++. |+++..
T Consensus 8 ~ri~vl~SG~gsnl~all~~~~~-~~l~~~I~~Visn~~~a---------------~~-------l~~A~~~--gIp~~~ 62 (209)
T 4ds3_A 8 NRVVIFISGGGSNMEALIRAAQA-PGFPAEIVAVFSDKAEA---------------GG-------LAKAEAA--GIATQV 62 (209)
T ss_dssp EEEEEEESSCCHHHHHHHHHHTS-TTCSEEEEEEEESCTTC---------------TH-------HHHHHHT--TCCEEE
T ss_pred ccEEEEEECCcHHHHHHHHHHHc-CCCCcEEEEEEECCccc---------------HH-------HHHHHHc--CCCEEE
Confidence 47988888876666666665432 12234666555433322 00 1223332 677654
Q ss_pred EEEcC-CC---chHHHHHHHHHcCCcEEEEccCCCCchhhHhhhh
Q 026225 152 AVVEG-KE---KGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMW 192 (241)
Q Consensus 152 ~~~~G-~~---~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~ 192 (241)
.-... .. .++.+++..++.++|++|+..-++=--..++-.|
T Consensus 63 ~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~agy~~il~~~~l~~~ 107 (209)
T 4ds3_A 63 FKRKDFASKEAHEDAILAALDVLKPDIICLAGYMRLLSGRFIAPY 107 (209)
T ss_dssp CCGGGSSSHHHHHHHHHHHHHHHCCSEEEESSCCSCCCHHHHGGG
T ss_pred eCccccCCHHHHHHHHHHHHHhcCCCEEEEeccccCcCHHHHhhc
Confidence 32211 11 1358999999999999999877654444444444
No 64
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=61.27 E-value=67 Score=26.35 Aligned_cols=80 Identities=14% Similarity=0.156 Sum_probs=51.1
Q ss_pred CCHHHHHHHHHHHHhhccCCC--EEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEEEEE-c-
Q 026225 80 SSNEAKGALQWSLTHTVQSQD--KVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEVAVV-E- 155 (241)
Q Consensus 80 ~s~~s~~al~~A~~~a~~~~~--~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~~~-~- 155 (241)
.++.+..||+.|+++..+ +. +|+.+.+=++ .+++.+..+..+ |.+--+.+. .
T Consensus 35 lnp~d~~Ale~A~~Lke~-g~~~~V~av~~G~~-----------------~a~~~lr~ala~------GaD~vi~v~~d~ 90 (252)
T 1efp_B 35 MNPFDEIAVEEAIRLKEK-GQAEEIIAVSIGVK-----------------QAAETLRTALAM------GADRAILVVAAD 90 (252)
T ss_dssp ECHHHHHHHHHHHHHHTT-TSCSEEEEEEEESG-----------------GGHHHHHHHHHH------TCSEEEEEECCS
T ss_pred CCHHHHHHHHHHHHHHhc-CCCceEEEEEeCCh-----------------hHHHHHHHHHhc------CCCEEEEEecCh
Confidence 467889999999999876 65 8888877532 112222222221 555444444 2
Q ss_pred ----CC---CchHHHHHHHHHcCCcEEEEccCCCC
Q 026225 156 ----GK---EKGPAIVEEARKQGVALLVLGQKKRS 183 (241)
Q Consensus 156 ----G~---~~~~~I~~~a~~~~~dllVmG~~~~~ 183 (241)
+. .....|.+.+++.++|+|++|.....
T Consensus 91 ~~~~~~~~~~~a~~La~~i~~~~~dlVl~G~~s~d 125 (252)
T 1efp_B 91 DVQQDIEPLAVAKILAAVARAEGTELIIAGKQAID 125 (252)
T ss_dssp STTCCCCHHHHHHHHHHHHHHHTCSEEEEESCCTT
T ss_pred hhcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccC
Confidence 21 23446777888888999999987753
No 65
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=60.98 E-value=37 Score=28.70 Aligned_cols=93 Identities=11% Similarity=0.123 Sum_probs=53.4
Q ss_pred CEEEEeecCCHHHHHHHHHHHHhhcc------------------CCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHH
Q 026225 72 RKIMIVVDSSNEAKGALQWSLTHTVQ------------------SQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFV 133 (241)
Q Consensus 72 ~~ILVavD~s~~s~~al~~A~~~a~~------------------~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l 133 (241)
.+|+|++.+..+|.-+|..+...+.. .+..+.++|+..... -.+..+..
T Consensus 54 ~~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vv~iDtg~~-------------fpet~~fv 120 (306)
T 2wsi_A 54 GEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRLPTVFIDQEET-------------FPTLENFV 120 (306)
T ss_dssp SSEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCEEEEECCCTTC-------------CHHHHHHH
T ss_pred CCEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCeeEEEEeCCCC-------------CHHHHHHH
Confidence 57999999999998777766654311 245688888854322 12222332
Q ss_pred HHHHHHHHhhCCCccEEEEEEc---CCCchHHHHHHHHHc-CCcEEEEccCCC
Q 026225 134 HSLKNMCQQKRPEVQFEVAVVE---GKEKGPAIVEEARKQ-GVALLVLGQKKR 182 (241)
Q Consensus 134 ~~~~~~~~~~~~~v~v~~~~~~---G~~~~~~I~~~a~~~-~~dllVmG~~~~ 182 (241)
++ .++.+ ++++.+.... +......+.++++.. ..+.|++|.+..
T Consensus 121 ~~---~~~~y--gl~l~v~~~~~~~~~~l~~~~~~~~k~~p~~~aii~G~Rrd 168 (306)
T 2wsi_A 121 LE---TSERY--CLSLYESQRQSGASVNMADAFRDFIKIYPETEAIVIGIRHT 168 (306)
T ss_dssp HH---HHHHT--TEEEEECCC-----CCHHHHHHHHHHHCTTCCEEECCCCCC
T ss_pred HH---HHHHc--CCCEEEEeCCccccccHHHHHHHHHhhCCCCcEEEEEEecc
Confidence 32 23332 5554332211 123444667777663 678999998765
No 66
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag, phosphorylation, gene regulation, signaling protein; HET: TPO FAD; 2.30A {Drosophila melanogaster} PDB: 4gu5_A*
Probab=59.84 E-value=10 Score=35.14 Aligned_cols=95 Identities=12% Similarity=0.084 Sum_probs=55.8
Q ss_pred cCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEEEEEcCCC
Q 026225 79 DSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEVAVVEGKE 158 (241)
Q Consensus 79 D~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~~~~G~~ 158 (241)
|.--....||..|++.+. .+..|..|+|.++....... ..........+-|..+.+.+... .+......+..|++
T Consensus 13 DLRl~DN~AL~~A~~~~~-~g~~vl~vfi~dp~~~~~~~---~~~~r~~Fl~~sL~~L~~~L~~~-~~~G~~L~v~~G~~ 87 (538)
T 3tvs_A 13 GLRLHDNPALLAALADKD-QGIALIPVFIFDGESAGTKN---VGYNRMRFLLDSLQDIDDQLQAA-TDGRGRLLVFEGEP 87 (538)
T ss_dssp CCCSSSCHHHHTTTGGGT-TTCBCCEEEEECSSSSCSTT---CCHHHHHHHHHHHHHHHHHGGGS-CSSSSCCEEEESCH
T ss_pred CcchhhhHHHHHHHHhCC-CCCCEEEEEecChhhhccCC---CCHHHHHHHHHHHHHHHHHHHHh-hcCCCeEEEEeCCH
Confidence 433333456766665543 34479999999876432211 11122234445556666666542 00034456677987
Q ss_pred chHHHHHHHHHcCCcEEEEcc
Q 026225 159 KGPAIVEEARKQGVALLVLGQ 179 (241)
Q Consensus 159 ~~~~I~~~a~~~~~dllVmG~ 179 (241)
.. .|.+++++.+++.|+.-.
T Consensus 88 ~~-vl~~L~~~~~a~~V~~n~ 107 (538)
T 3tvs_A 88 AY-IFRRLHEQVRLHRICIEQ 107 (538)
T ss_dssp HH-HHHHHHHHHCEEEECEEC
T ss_pred HH-HHHHHHHHcCCCEEEEcc
Confidence 65 999999999999998743
No 67
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=59.37 E-value=64 Score=28.46 Aligned_cols=36 Identities=14% Similarity=0.159 Sum_probs=29.2
Q ss_pred CEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcC
Q 026225 72 RKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKP 110 (241)
Q Consensus 72 ~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~ 110 (241)
++|+|++.+..+|.-++.|+.+. .+.+|..+|+...
T Consensus 1 ~kVvva~SGG~DSsvll~ll~~~---~g~~V~av~vd~g 36 (400)
T 1kor_A 1 MKIVLAYSGGLDTSIILKWLKET---YRAEVIAFTADIG 36 (400)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHH---HTCEEEEEEEESS
T ss_pred CcEEEEEeChHHHHHHHHHHHHh---hCCcEEEEEEeCC
Confidence 47999999999999888888654 2578999999654
No 68
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=59.26 E-value=46 Score=29.40 Aligned_cols=36 Identities=17% Similarity=0.178 Sum_probs=28.9
Q ss_pred CCCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEc
Q 026225 70 SGRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIK 109 (241)
Q Consensus 70 ~~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~ 109 (241)
...+|+|++.+..+|.-++..+.. .+.++..+|+..
T Consensus 186 ~~~kvlvalSGGvDS~vll~ll~~----~G~~v~av~v~~ 221 (413)
T 2c5s_A 186 VGGKVMVLLSGGIDSPVAAYLTMK----RGVSVEAVHFHS 221 (413)
T ss_dssp TTEEEEEECCSSSHHHHHHHHHHH----BTEEEEEEEEEC
T ss_pred CCCeEEEEeCCCChHHHHHHHHHH----cCCcEEEEEEeC
Confidence 357899999999898877776654 378899999964
No 69
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=58.78 E-value=7.8 Score=35.89 Aligned_cols=100 Identities=17% Similarity=0.198 Sum_probs=58.5
Q ss_pred CEEEEee--cCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCC-----Cc-hhhHhhhhHHHHHHHHHHHHHHHhh
Q 026225 72 RKIMIVV--DSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQA-----TG-EESGKQRAPRGYEFVHSLKNMCQQK 143 (241)
Q Consensus 72 ~~ILVav--D~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~-----~~-~~~~~~~~~~~~~~l~~~~~~~~~~ 143 (241)
+.+||=. |.--....||..|++ .+..|..|+|.++...... .+ ............+-|..+.+.+.+.
T Consensus 5 ~~~lvWFRrDLRl~DN~AL~~A~~----~~~~vlpvfi~dp~~~~~~~~~~~~g~~~~g~~r~~Fl~~sL~~L~~~L~~~ 80 (537)
T 3fy4_A 5 SGSLIWFRKGLRVHDNPALEYASK----GSEFMYPVFVIDPHYMESDPSAFSPGSSRAGVNRIRFLLESLKDLDSSLKKL 80 (537)
T ss_dssp CEEEEEESSCCCSTTCHHHHHHHT----TCSCEEEEEEECHHHHSCCTTSSSSBCSSCBHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcEEEEeCCCcccchhHHHHHHHh----cCCCEEEEEEeChhhhcccccccccccccCCHHHHHHHHHHHHHHHHHHHHc
Confidence 3344443 544444456776654 4567999999986431110 00 0111222334455566666666653
Q ss_pred CCCccEEEEEEcCCCchHHHHHHHHHcCCcEEEEccC
Q 026225 144 RPEVQFEVAVVEGKEKGPAIVEEARKQGVALLVLGQK 180 (241)
Q Consensus 144 ~~~v~v~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~ 180 (241)
|. ...+..|++.. .|.+++++.+++.|+.-..
T Consensus 81 --G~--~L~v~~G~~~~-vl~~L~~~~~~~~V~~n~~ 112 (537)
T 3fy4_A 81 --GS--RLLVFKGEPGE-VLVRCLQEWKVKRLCFEYD 112 (537)
T ss_dssp --TC--CCEEEESCHHH-HHHHHHTTSCEEEEEECCC
T ss_pred --CC--ceEEEECCHHH-HHHHHHHHcCCCEEEEecc
Confidence 44 44556788765 9999999999999988643
No 70
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=58.74 E-value=62 Score=25.11 Aligned_cols=35 Identities=20% Similarity=0.357 Sum_probs=28.1
Q ss_pred CEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcC
Q 026225 72 RKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKP 110 (241)
Q Consensus 72 ~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~ 110 (241)
++|+|++.+.-+|.-++.++.+. +.+|..+|+...
T Consensus 4 ~~v~v~lSGG~DS~~ll~ll~~~----~~~v~~~~~~~~ 38 (219)
T 3bl5_A 4 EKAIVVFSGGQDSTTCLLWALKE----FEEVETVTFHYN 38 (219)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHH----CSEEEEEEEESS
T ss_pred CCEEEEccCcHHHHHHHHHHHHc----CCceEEEEEeCC
Confidence 58999999999998787777654 368889999764
No 71
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Probab=58.36 E-value=1.1e+02 Score=27.75 Aligned_cols=124 Identities=7% Similarity=0.025 Sum_probs=70.5
Q ss_pred EEEEee--cCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEE
Q 026225 73 KIMIVV--DSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFE 150 (241)
Q Consensus 73 ~ILVav--D~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~ 150 (241)
.+|+=+ |.--....||..|++. + .+..|+|+++........... ......+-|..+.+.+... |+++
T Consensus 13 ~~l~WfrrDLRl~DN~aL~~A~~~----~-~v~pvfi~dp~~~~~~~~~~~---~~~fl~~sL~~L~~~L~~~--G~~L- 81 (509)
T 1u3d_A 13 CSIVWFRRDLRVEDNPALAAAVRA----G-PVIALFVWAPEEEGHYHPGRV---SRWWLKNSLAQLDSSLRSL--GTCL- 81 (509)
T ss_dssp CEEEEESSCCCSTTCHHHHHHHHH----S-CEEEEEEECGGGGTTCCCCHH---HHHHHHHHHHHHHHHHHHT--TCCE-
T ss_pred cEEEEECCCCccchhHHHHHHHhC----C-CEEEEEEECchhcccCCcchH---HHHHHHHHHHHHHHHHHHC--CCeE-
Confidence 344444 5544455678888764 2 577888888653211111111 1113455566666666653 6665
Q ss_pred EEEEc-CCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeCC
Q 026225 151 VAVVE-GKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRK 220 (241)
Q Consensus 151 ~~~~~-G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~ 220 (241)
.+.. |++ .+.|.+++++.+++.|+.... ......-. -......+....|++..+...
T Consensus 82 -~v~~~g~~-~~~l~~l~~~~~~~~V~~~~~-~~p~~~~r----------d~~v~~~l~~~gi~~~~~~~~ 139 (509)
T 1u3d_A 82 -ITKRSTDS-VASLLDVVKSTGASQIFFNHL-YDPLSLVR----------DHRAKDVLTAQGIAVRSFNAD 139 (509)
T ss_dssp -EEEECSCH-HHHHHHHHHHHTCCEEEEECC-CSHHHHHH----------HHHHHHHHHTTTCEEEEECCS
T ss_pred -EEEeCCCH-HHHHHHHHHHcCCCEEEEecc-cCHHHHHH----------HHHHHHHHHHcCcEEEEECCC
Confidence 4454 454 449999999999999988643 22322221 113344556678888887543
No 72
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=57.94 E-value=68 Score=25.38 Aligned_cols=35 Identities=14% Similarity=0.194 Sum_probs=28.4
Q ss_pred CEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcC
Q 026225 72 RKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKP 110 (241)
Q Consensus 72 ~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~ 110 (241)
++++|++.+.-+|..++.++.+. +.+|..+|+...
T Consensus 3 ~kvvv~lSGG~DS~~~l~ll~~~----~~~v~av~~~~g 37 (232)
T 2pg3_A 3 KRAVVVFSGGQDSTTCLIQALQD----YDDVHCITFDYG 37 (232)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHH----CSEEEEEEEESS
T ss_pred CCEEEEecCcHHHHHHHHHHHHc----CCCEEEEEEECC
Confidence 68999999999999888887664 258888888654
No 73
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=57.26 E-value=6.1 Score=30.12 Aligned_cols=53 Identities=11% Similarity=0.022 Sum_probs=35.0
Q ss_pred chHHHHHHHHHcCCcEEEEcc-----CCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeCCC
Q 026225 159 KGPAIVEEARKQGVALLVLGQ-----KKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRKS 221 (241)
Q Consensus 159 ~~~~I~~~a~~~~~dllVmG~-----~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~~ 221 (241)
..+.|.+++++++++.||+|- -..+...... -.++..+....++||..|..+.
T Consensus 43 ~~~~l~~li~~~~~~~ivVGlP~~~nGt~~~~~~~a----------r~f~~~L~~~~~lpV~~vDEr~ 100 (150)
T 1vhx_A 43 GLSRLSELIKDYTIDKIVLGFPKNMNGTVGPRGEAS----------QTFAKVLETTYNVPVVLWDERL 100 (150)
T ss_dssp CHHHHHHHHTTSEEEEEEEECCCCBTTBCCHHHHHH----------HHHHHHHHHHHCSCEEEECCSS
T ss_pred HHHHHHHHHHHcCCCEEEEeeeecCCcchhHHHHHH----------HHHHHHHHHhhCCCEEEecCCC
Confidence 445899999999999999992 2222222111 1255666666689999986553
No 74
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=54.37 E-value=12 Score=28.04 Aligned_cols=53 Identities=6% Similarity=-0.091 Sum_probs=35.8
Q ss_pred CchHHHHHHHHHcCCcEEEEccC----C-CCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeCC
Q 026225 158 EKGPAIVEEARKQGVALLVLGQK----K-RSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRK 220 (241)
Q Consensus 158 ~~~~~I~~~a~~~~~dllVmG~~----~-~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~ 220 (241)
...+.|.+++++++++.||+|-- + .+...... -.+++.+-...++||..+-.+
T Consensus 40 ~~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~----------~~f~~~L~~~~~lpV~~~DER 97 (138)
T 1nu0_A 40 PDWNIIERLLKEWQPDEIIVGLPLNMDGTEQPLTARA----------RKFANRIHGRFGVEVKLHDER 97 (138)
T ss_dssp ECHHHHHHHHHHHCCSEEEEEEEECTTSCBCHHHHHH----------HHHHHHHHHHHCCCEEEEEEE
T ss_pred hHHHHHHHHHHHcCCCEEEEecccCCCcCcCHHHHHH----------HHHHHHHHHHhCCCEEEEcCC
Confidence 33458999999999999999931 2 22222221 236667766678999999654
No 75
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=54.21 E-value=53 Score=26.40 Aligned_cols=97 Identities=12% Similarity=0.066 Sum_probs=56.0
Q ss_pred CCCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccE
Q 026225 70 SGRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQF 149 (241)
Q Consensus 70 ~~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v 149 (241)
+..||.|-+.++.....+|-.+.. ...+.+|.+|-..++ . . ..+.+++. |+++
T Consensus 11 ~~~ri~vl~SG~gsnl~all~~~~--~~~~~eI~~Vis~~~-a---------------~-------~~~~A~~~--gIp~ 63 (215)
T 3da8_A 11 APARLVVLASGTGSLLRSLLDAAV--GDYPARVVAVGVDRE-C---------------R-------AAEIAAEA--SVPV 63 (215)
T ss_dssp SSEEEEEEESSCCHHHHHHHHHSS--TTCSEEEEEEEESSC-C---------------H-------HHHHHHHT--TCCE
T ss_pred CCcEEEEEEeCChHHHHHHHHHHh--ccCCCeEEEEEeCCc-h---------------H-------HHHHHHHc--CCCE
Confidence 456899999887666666665542 133456665533221 1 0 12233332 7776
Q ss_pred EEEEEcC-CC---chHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhc
Q 026225 150 EVAVVEG-KE---KGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWA 193 (241)
Q Consensus 150 ~~~~~~G-~~---~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~ 193 (241)
...-... .. .++.+++..++.++|++|+..-++=--..++-.|.
T Consensus 64 ~~~~~~~~~~r~~~d~~~~~~l~~~~~Dlivlagy~~iL~~~~l~~~~ 111 (215)
T 3da8_A 64 FTVRLADHPSRDAWDVAITAATAAHEPDLVVSAGFMRILGPQFLSRFY 111 (215)
T ss_dssp EECCGGGSSSHHHHHHHHHHHHHTTCCSEEEEEECCSCCCHHHHHHHT
T ss_pred EEeCcccccchhhhhHHHHHHHHhhCCCEEEEcCchhhCCHHHHhhcc
Confidence 5542211 11 13578999999999999998876644444554444
No 76
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Probab=54.11 E-value=23 Score=31.80 Aligned_cols=112 Identities=11% Similarity=0.083 Sum_probs=63.0
Q ss_pred HHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEEEEEcCCCchHHHH
Q 026225 85 KGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEVAVVEGKEKGPAIV 164 (241)
Q Consensus 85 ~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~~~~G~~~~~~I~ 164 (241)
..||..|++ .+..|..|+|.++....... ........-..+-|..+.+.+.+. |+++ .+..|++.+ .|.
T Consensus 16 N~aL~~A~~----~~~~v~~vfi~dp~~~~~~~--~~~~~r~~Fl~~sL~~L~~~L~~~--G~~L--~v~~g~~~~-~l~ 84 (440)
T 2e0i_A 16 NTGLNYALS----ECDRVIPVFIADPRQLINNP--YKSEFAVSFMINSLLELDDELRKK--GSRL--NVFFGEAEK-VVS 84 (440)
T ss_dssp CHHHHHHHH----HSSEEEEEEEECHHHHSSCT--TCCHHHHHHHHHHHHHHHHHHHTT--TCCC--EEEESCHHH-HHH
T ss_pred hHHHHHHHh----cCCCEEEEEEeChhhhccCC--cCCHHHHHHHHHHHHHHHHHHHHc--CCeE--EEEECCHHH-HHH
Confidence 356666665 35689999999864311100 011122233445556666666553 5554 445788655 888
Q ss_pred HHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeCC
Q 026225 165 EEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRK 220 (241)
Q Consensus 165 ~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~ 220 (241)
++++ +++.|+.-..- .....-. -..+...+....|++..+...
T Consensus 85 ~l~~--~~~~v~~~~~~-~~~~~~r----------d~~v~~~l~~~gi~~~~~~~~ 127 (440)
T 2e0i_A 85 RFFN--KVDAIYVNEDY-TPFSISR----------DEKIRKVCEENGIEFKAYEDY 127 (440)
T ss_dssp HHCT--TCSEEEEECCC-SHHHHHH----------HHHHHHHHHTTTCEEEEECCS
T ss_pred HHHc--CCCEEEEeccc-ChHHHHH----------HHHHHHHHHHcCceEEEecCC
Confidence 8877 99998885433 2222221 123344555668888877544
No 77
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=53.81 E-value=1e+02 Score=26.10 Aligned_cols=97 Identities=9% Similarity=0.099 Sum_probs=58.3
Q ss_pred CCCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccE
Q 026225 70 SGRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQF 149 (241)
Q Consensus 70 ~~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v 149 (241)
...||+|-+.++.....+|-++... ...+.+|.+|-...+.. + ..++. .|+++
T Consensus 104 ~~~ri~vl~Sg~g~nl~~ll~~~~~-g~l~~~I~~Visn~~~~-----------------~-------~~A~~--~gIp~ 156 (302)
T 3o1l_A 104 QKKRVVLMASRESHCLADLLHRWHS-DELDCDIACVISNHQDL-----------------R-------SMVEW--HDIPY 156 (302)
T ss_dssp SCCEEEEEECSCCHHHHHHHHHHHT-TCSCSEEEEEEESSSTT-----------------H-------HHHHT--TTCCE
T ss_pred CCcEEEEEEeCCchhHHHHHHHHHC-CCCCcEEEEEEECcHHH-----------------H-------HHHHH--cCCCE
Confidence 3578999988877777777766442 23456776665543321 1 11222 27777
Q ss_pred EEEEEcCCC---chHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhc
Q 026225 150 EVAVVEGKE---KGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWA 193 (241)
Q Consensus 150 ~~~~~~G~~---~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~ 193 (241)
...-..... .++.+++..++.++|+||+..-.+=--..++-.|.
T Consensus 157 ~~~~~~~~~r~~~~~~~~~~l~~~~~DliVlagym~IL~~~~l~~~~ 203 (302)
T 3o1l_A 157 YHVPVDPKDKEPAFAEVSRLVGHHQADVVVLARYMQILPPQLCREYA 203 (302)
T ss_dssp EECCCCSSCCHHHHHHHHHHHHHTTCSEEEESSCCSCCCTTHHHHTT
T ss_pred EEcCCCcCCHHHHHHHHHHHHHHhCCCEEEHhHhhhhcCHHHHhhhh
Confidence 654222222 23579999999999999998776543344444443
No 78
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=52.12 E-value=1.3e+02 Score=26.82 Aligned_cols=38 Identities=11% Similarity=0.118 Sum_probs=29.7
Q ss_pred CCCCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcC
Q 026225 69 SSGRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKP 110 (241)
Q Consensus 69 ~~~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~ 110 (241)
-|.++|+|++.+.-+|.-++.|+.+ .+.+|+.+++.-.
T Consensus 12 ~~~~KVVVA~SGGlDSSv~a~~Lke----~G~eViavt~d~G 49 (421)
T 1vl2_A 12 HMKEKVVLAYSGGLDTSVILKWLCE----KGFDVIAYVANVG 49 (421)
T ss_dssp --CCEEEEECCSSHHHHHHHHHHHH----TTCEEEEEEEESS
T ss_pred cccCCEEEEeCCcHHHHHHHHHHHH----CCCeEEEEEEEcC
Confidence 3678999999999999988888754 3778988888643
No 79
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=52.11 E-value=90 Score=24.99 Aligned_cols=96 Identities=11% Similarity=0.091 Sum_probs=55.1
Q ss_pred CCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEE
Q 026225 71 GRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFE 150 (241)
Q Consensus 71 ~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~ 150 (241)
..||.|-+.++.....+|-.+...- .+.+|.+|-...+.. .. .+.+++. |+++.
T Consensus 5 ~~riavl~SG~Gsnl~all~~~~~~--~~~eI~~Vis~~~~a---------------~~-------~~~A~~~--gIp~~ 58 (215)
T 3tqr_A 5 PLPIVVLISGNGTNLQAIIGAIQKG--LAIEIRAVISNRADA---------------YG-------LKRAQQA--DIPTH 58 (215)
T ss_dssp CEEEEEEESSCCHHHHHHHHHHHTT--CSEEEEEEEESCTTC---------------HH-------HHHHHHT--TCCEE
T ss_pred CcEEEEEEeCCcHHHHHHHHHHHcC--CCCEEEEEEeCCcch---------------HH-------HHHHHHc--CCCEE
Confidence 3579888888766666666665432 345666555433321 11 1222222 67765
Q ss_pred EEEEcC-CC---chHHHHHHHHHcCCcEEEEccCCCCchhhHhhhh
Q 026225 151 VAVVEG-KE---KGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMW 192 (241)
Q Consensus 151 ~~~~~G-~~---~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~ 192 (241)
..-... .. .++.+++..++.++|++|+..-++=--..++-.|
T Consensus 59 ~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~agy~~il~~~~l~~~ 104 (215)
T 3tqr_A 59 IIPHEEFPSRTDFESTLQKTIDHYDPKLIVLAGFMRKLGKAFVSHY 104 (215)
T ss_dssp ECCGGGSSSHHHHHHHHHHHHHTTCCSEEEESSCCSCCCHHHHHHT
T ss_pred EeCccccCchhHhHHHHHHHHHhcCCCEEEEccchhhCCHHHHhhc
Confidence 432221 11 1457999999999999999877654444454444
No 80
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1
Probab=50.55 E-value=17 Score=32.85 Aligned_cols=86 Identities=14% Similarity=0.105 Sum_probs=51.0
Q ss_pred HHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEEEEE--cCCCchHHH
Q 026225 86 GALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEVAVV--EGKEKGPAI 163 (241)
Q Consensus 86 ~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~~~--~G~~~~~~I 163 (241)
.||..|++. .. +.|..|+|+++...... ........-..+-|..+.+.+.+. |+++.+..+ .|++.+ .|
T Consensus 17 ~aL~~A~~~--~~-~~v~~vfi~dp~~~~~~---~~~~~r~~fl~~sL~~L~~~L~~~--G~~L~v~~~~~~g~~~~-~l 87 (471)
T 1dnp_A 17 LALAAACRN--SS-ARVLALYIATPRQWATH---NMSPRQAELINAQLNGLQIALAEK--GIPLLFREVDDFVASVE-IV 87 (471)
T ss_dssp HHHHHHSSS--TT-SEEEEEEEECHHHHHHT---TCCHHHHHHHHHHHHHHHHHHHHT--TCCEEEEECSSHHHHHH-HH
T ss_pred HHHHHHHhC--CC-CCEEEEEEECchhhccC---CCCHHHHHHHHHHHHHHHHHHHHC--CCeEEEEEccCCCCHHH-HH
Confidence 466666542 13 38999999886421000 011112233445556666666653 666654333 677655 99
Q ss_pred HHHHHHcCCcEEEEccC
Q 026225 164 VEEARKQGVALLVLGQK 180 (241)
Q Consensus 164 ~~~a~~~~~dllVmG~~ 180 (241)
.+++++.+++.|+.-..
T Consensus 88 ~~l~~~~~~~~v~~~~~ 104 (471)
T 1dnp_A 88 KQVCAENSVTHLFYNYQ 104 (471)
T ss_dssp HHHHHHHTCCEEEEECC
T ss_pred HHHHHHcCCCEEEEecc
Confidence 99999999999988543
No 81
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=47.81 E-value=60 Score=27.34 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=28.1
Q ss_pred CEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcC
Q 026225 72 RKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKP 110 (241)
Q Consensus 72 ~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~ 110 (241)
++|+|++.+.-+|.-++..+.+. .+.++..+|+...
T Consensus 21 ~kvlvalSGGvDSsvla~ll~~~---~g~~v~av~vd~g 56 (308)
T 2dpl_A 21 SKAIIALSGGVDSSTAAVLAHKA---IGDRLHAVFVNTG 56 (308)
T ss_dssp SCEEEECCSSHHHHHHHHHHHHH---HGGGEEEEEEECS
T ss_pred CCEEEEEeChHHHHHHHHHHHHh---hCCCEEEEEEcCC
Confidence 68999999999998777776554 2467889998654
No 82
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=45.27 E-value=1.4e+02 Score=25.11 Aligned_cols=97 Identities=13% Similarity=0.145 Sum_probs=59.3
Q ss_pred CCCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccE
Q 026225 70 SGRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQF 149 (241)
Q Consensus 70 ~~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v 149 (241)
..+||+|-+.++.....+|-++... .....+|.+|-...+.. +. .++.. |+++
T Consensus 94 ~~~ri~vl~Sg~g~~l~~ll~~~~~-g~l~~~i~~Visn~~~~-----------------~~-------~A~~~--gIp~ 146 (292)
T 3lou_A 94 ARPKVLIMVSKLEHCLADLLFRWKM-GELKMDIVGIVSNHPDF-----------------AP-------LAAQH--GLPF 146 (292)
T ss_dssp SCCEEEEEECSCCHHHHHHHHHHHH-TSSCCEEEEEEESSSTT-----------------HH-------HHHHT--TCCE
T ss_pred CCCEEEEEEcCCCcCHHHHHHHHHc-CCCCcEEEEEEeCcHHH-----------------HH-------HHHHc--CCCE
Confidence 4578999998877777777776543 33456776655533321 11 12222 7777
Q ss_pred EEEEEcCCCc---hHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhc
Q 026225 150 EVAVVEGKEK---GPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWA 193 (241)
Q Consensus 150 ~~~~~~G~~~---~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~ 193 (241)
...-...... ++.+++..+++++|++|+....+=--..++-.|.
T Consensus 147 ~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivla~y~~il~~~~l~~~~ 193 (292)
T 3lou_A 147 RHFPITADTKAQQEAQWLDVFETSGAELVILARYMQVLSPEASARLA 193 (292)
T ss_dssp EECCCCSSCHHHHHHHHHHHHHHHTCSEEEESSCCSCCCHHHHHHTT
T ss_pred EEeCCCcCCHHHHHHHHHHHHHHhCCCEEEecCchhhCCHHHHhhhc
Confidence 6533222222 3478999999999999998776644444554443
No 83
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=45.26 E-value=19 Score=28.29 Aligned_cols=112 Identities=9% Similarity=-0.006 Sum_probs=62.2
Q ss_pred CCCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccE
Q 026225 70 SGRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQF 149 (241)
Q Consensus 70 ~~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v 149 (241)
|.++|++++-++..+.++++....+. +.+.+|.++-.-....+.. ... ++.. .+. +
T Consensus 1 ~~k~IllgvTGs~aa~k~~~l~~~L~-~~g~~V~vv~T~~A~~fi~--------~~~-------------l~~l-~~~-~ 56 (181)
T 1g63_A 1 MYGKLLICATASINVININHYIVELK-QHFDEVNILFSPSSKNFIN--------TDV-------------LKLF-CDN-L 56 (181)
T ss_dssp CCCCEEEEECSCGGGGGHHHHHHHHT-TTSSCEEEEECGGGGGTSC--------GGG-------------GGGT-SSC-E
T ss_pred CCCEEEEEEECHHHHHHHHHHHHHHH-HCCCEEEEEEchhHHHHHH--------HHH-------------HHHH-hCC-c
Confidence 56899999999998888988876664 4477776654322111111 000 1110 122 1
Q ss_pred EEEEEcCC--CchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEe
Q 026225 150 EVAVVEGK--EKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVR 218 (241)
Q Consensus 150 ~~~~~~G~--~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~ 218 (241)
.-... +.+ =++.+ ..+|++|+..-....+.++-. .-. .+....++....+|++++|
T Consensus 57 ---~d~~~~~~~~--hi~l~--~~aD~~vIaPaTantlAKiA~----Gia--Dnllt~~~la~~~pvvlaP 114 (181)
T 1g63_A 57 ---YDEIKDPLLN--HINIV--ENHEYILVLPASANTINKIAN----GIC--DNLLTTVCLTGYQKLFIFP 114 (181)
T ss_dssp ---ECTTTCTTCC--HHHHH--HTCSEEEEEEECHHHHHHHHT----TCC--CSHHHHHHHHTGGGEEEEE
T ss_pred ---ccccCCCCCc--ccccc--ccCCEEEEecCCHHHHHHHHc----ccc--CcHHHHHHHHcCCCEEEEe
Confidence 11111 222 22333 368999998665555555443 111 3455555566799999998
No 84
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=44.43 E-value=1.4e+02 Score=24.96 Aligned_cols=97 Identities=15% Similarity=0.180 Sum_probs=59.1
Q ss_pred CCCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccE
Q 026225 70 SGRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQF 149 (241)
Q Consensus 70 ~~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v 149 (241)
...||.|-+.++.....+|-++... .....+|.+|-...+.. ++ .++. .|+++
T Consensus 89 ~~~ri~vl~Sg~g~~l~~ll~~~~~-g~l~~~i~~Visn~~~~-----------------~~-------~A~~--~gIp~ 141 (286)
T 3n0v_A 89 HRPKVVIMVSKADHCLNDLLYRQRI-GQLGMDVVAVVSNHPDL-----------------EP-------LAHW--HKIPY 141 (286)
T ss_dssp CCCEEEEEESSCCHHHHHHHHHHHT-TSSCCEEEEEEESSSTT-----------------HH-------HHHH--TTCCE
T ss_pred CCcEEEEEEeCCCCCHHHHHHHHHC-CCCCcEEEEEEeCcHHH-----------------HH-------HHHH--cCCCE
Confidence 4568999998887777777776442 23456776665543321 11 1222 27777
Q ss_pred EEEEEcCCCc---hHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhc
Q 026225 150 EVAVVEGKEK---GPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWA 193 (241)
Q Consensus 150 ~~~~~~G~~~---~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~ 193 (241)
...-...... +..+++..+++++|++|+....+=--..++-.|.
T Consensus 142 ~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivla~y~~il~~~~l~~~~ 188 (286)
T 3n0v_A 142 YHFALDPKDKPGQERKVLQVIEETGAELVILARYMQVLSPELCRRLD 188 (286)
T ss_dssp EECCCBTTBHHHHHHHHHHHHHHHTCSEEEESSCCSCCCHHHHHHTT
T ss_pred EEeCCCcCCHHHHHHHHHHHHHhcCCCEEEecccccccCHHHHhhhc
Confidence 6543222222 3478999999999999998776544444554443
No 85
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=44.27 E-value=65 Score=28.80 Aligned_cols=69 Identities=10% Similarity=0.139 Sum_probs=43.3
Q ss_pred HHHHHHHHHhhCCCccEEEEEEcCCCchHHHHHHHH---HcCC-cEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHh
Q 026225 133 VHSLKNMCQQKRPEVQFEVAVVEGKEKGPAIVEEAR---KQGV-ALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQ 208 (241)
Q Consensus 133 l~~~~~~~~~~~~~v~v~~~~~~G~~~~~~I~~~a~---~~~~-dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~ 208 (241)
++++...++.. |++++..+.--+-..+.+.++++ ..++ +.||.++-....+-.+ +..
T Consensus 281 ~~~a~~~l~~~--gi~~~v~V~saHR~p~~~~~~~~~~~~~g~~~viIa~AG~~a~Lpgv-----------------va~ 341 (425)
T 2h31_A 281 CEKIKKACGNF--GIPCELRVTSAHKGPDETLRIKAEYEGDGIPTVFVAVAGRSNGLGPV-----------------MSG 341 (425)
T ss_dssp HHHHHHHHHHT--TCCEEEEECCTTTCHHHHHHHHHHHHTTCCCEEEEEECCSSCCHHHH-----------------HHH
T ss_pred HHHHHHHHHHc--CCceEEeeeeccCCHHHHHHHHHHHHHCCCCeEEEEEcCcccchHhH-----------------Hhc
Confidence 34444445443 78888887776544446666655 4556 5677766555555433 445
Q ss_pred cCCceEEEEeCC
Q 026225 209 NADCMAVAVRRK 220 (241)
Q Consensus 209 ~a~~pVlvV~~~ 220 (241)
.+++||+-||..
T Consensus 342 ~t~~PVIgvP~~ 353 (425)
T 2h31_A 342 NTAYPVISCPPL 353 (425)
T ss_dssp HCSSCEEECCCC
T ss_pred cCCCCEEEeeCc
Confidence 789999999874
No 86
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=44.20 E-value=30 Score=28.67 Aligned_cols=57 Identities=14% Similarity=0.193 Sum_probs=40.0
Q ss_pred HHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeCCC---------cCCCCeEEec
Q 026225 162 AIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRKS---------KKLGGYLITT 231 (241)
Q Consensus 162 ~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~~---------~~~~~~li~t 231 (241)
.+++.+++.++|++|+.+-....- + ..-+..++....+|++|+.+.. ....||.|-.
T Consensus 55 ~~~~~~~~~~pDfvI~isPN~a~P-G------------P~~ARE~l~~~~iP~IvI~D~p~~K~kd~l~~~g~GYIivk 120 (283)
T 1qv9_A 55 MALDIAEDFEPDFIVYGGPNPAAP-G------------PSKAREMLADSEYPAVIIGDAPGLKVKDEMEEQGLGYILVK 120 (283)
T ss_dssp HHHHHHHHHCCSEEEEECSCTTSH-H------------HHHHHHHHHTSSSCEEEEEEGGGGGGHHHHHHTTCEEEEET
T ss_pred HhhhhhhhcCCCEEEEECCCCCCC-C------------chHHHHHHHhCCCCEEEEcCCcchhhHHHHHhcCCcEEEEe
Confidence 344555788999999987654322 1 2356778889999999997554 2567888765
No 87
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=42.60 E-value=1.3e+02 Score=24.12 Aligned_cols=75 Identities=13% Similarity=0.137 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHhhCCCccEEEEEEcCCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHH
Q 026225 128 RGYEFVHSLKNMCQQKRPEVQFEVAVVEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCI 207 (241)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~~v~v~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi 207 (241)
...+++..+.+.+.+. |..+.............+++.....++|-||+....... ..-..+
T Consensus 24 ~~~~~~~gi~~~a~~~--g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~-----------------~~~~~l 84 (294)
T 3qk7_A 24 TFLEMISWIGIELGKR--GLDLLLIPDEPGEKYQSLIHLVETRRVDALIVAHTQPED-----------------FRLQYL 84 (294)
T ss_dssp HHHHHHHHHHHHHHHT--TCEEEEEEECTTCCCHHHHHHHHHTCCSEEEECSCCSSC-----------------HHHHHH
T ss_pred hHHHHHHHHHHHHHHC--CCEEEEEeCCChhhHHHHHHHHHcCCCCEEEEeCCCCCh-----------------HHHHHH
Confidence 4445566666666664 777776665544444578888888899999986544221 112234
Q ss_pred hcCCceEEEEeCCC
Q 026225 208 QNADCMAVAVRRKS 221 (241)
Q Consensus 208 ~~a~~pVlvV~~~~ 221 (241)
....+||+++-...
T Consensus 85 ~~~~iPvV~~~~~~ 98 (294)
T 3qk7_A 85 QKQNFPFLALGRSH 98 (294)
T ss_dssp HHTTCCEEEESCCC
T ss_pred HhCCCCEEEECCCC
Confidence 56789999997653
No 88
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=40.27 E-value=20 Score=32.96 Aligned_cols=36 Identities=11% Similarity=0.113 Sum_probs=28.3
Q ss_pred CEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcC
Q 026225 72 RKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKP 110 (241)
Q Consensus 72 ~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~ 110 (241)
++|+|++.+.-+|.-++..+.+. .+.++.++|+...
T Consensus 231 ~kvlvalSGGvDSsvla~ll~~~---~G~~v~av~vd~g 266 (527)
T 3tqi_A 231 EQVIVGLSGGVDSAVTATLVHKA---IGDQLVCVLVDTG 266 (527)
T ss_dssp SCEEEECTTTHHHHHHHHHHHHH---HGGGEEEEEECCS
T ss_pred CeEEEEEecCcCHHHHHHHHHHH---hCCeEEEEEeccC
Confidence 78999999999998777766553 3568999999653
No 89
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=38.81 E-value=1.4e+02 Score=23.23 Aligned_cols=35 Identities=3% Similarity=-0.079 Sum_probs=27.4
Q ss_pred CEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcC
Q 026225 72 RKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKP 110 (241)
Q Consensus 72 ~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~ 110 (241)
++|+|++.+..+|..++.++.+ .+.++..+|+...
T Consensus 7 ~kv~v~~SGG~DS~~ll~ll~~----~g~~v~~~~v~~~ 41 (203)
T 3k32_A 7 MDVHVLFSGGKDSSLSAVILKK----LGYNPHLITINFG 41 (203)
T ss_dssp EEEEEECCCSHHHHHHHHHHHH----TTEEEEEEEEECS
T ss_pred CeEEEEEECcHHHHHHHHHHHH----cCCCeEEEEEeCC
Confidence 6899999999999877765543 4668999998764
No 90
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=38.22 E-value=36 Score=26.48 Aligned_cols=115 Identities=10% Similarity=0.070 Sum_probs=63.0
Q ss_pred CCCCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCcc
Q 026225 69 SSGRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQ 148 (241)
Q Consensus 69 ~~~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~ 148 (241)
.|.++|++++-++..+.++++.+..+ .+.+.+|.++-.-.. ..+.. . +.++. +. + +
T Consensus 3 ~m~k~IllgvTGs~aa~k~~~ll~~L-~~~g~~V~vv~T~~A--------~~fi~---~---~~l~~---l~-----~-~ 58 (175)
T 3qjg_A 3 AMGENVLICLCGSVNSINISHYIIEL-KSKFDEVNVIASTNG--------RKFIN---G---EILKQ---FC-----D-N 58 (175)
T ss_dssp --CCEEEEEECSSGGGGGHHHHHHHH-TTTCSEEEEEECTGG--------GGGSC---H---HHHHH---HC-----S-C
T ss_pred CCCCEEEEEEeCHHHHHHHHHHHHHH-HHCCCEEEEEECcCH--------HHHhh---H---HHHHH---hc-----C-C
Confidence 46689999999999888888876555 455777665542111 11111 1 11121 11 2 2
Q ss_pred EEEEEEcCCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEe
Q 026225 149 FEVAVVEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVR 218 (241)
Q Consensus 149 v~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~ 218 (241)
+.... + ++.. ..++.++ .+|++|+..-....+.++-. .-. .+....++....+|+++++
T Consensus 59 v~~~~-~-~~~~-~hi~l~~--~aD~~vVaPaTanTlakiA~----Gia--DnLlt~~~la~~~pvvl~P 117 (175)
T 3qjg_A 59 YYDEF-E-DPFL-NHVDIAN--KHDKIIILPATSNTINKIAN----GIC--DNLLLTICHTAFEKLSIFP 117 (175)
T ss_dssp EECTT-T-CTTC-CHHHHHH--TCSEEEEEEECHHHHHHHHT----TCC--CSHHHHHHHTCGGGEEEEE
T ss_pred EEecC-C-CCcc-ccccccc--hhCEEEEeeCCHHHHHHHHc----ccc--CCHHHHHHHHcCCCEEEEe
Confidence 21111 1 1111 3555554 67999988655544554442 111 3455566677799999998
No 91
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=37.81 E-value=1.4e+02 Score=23.17 Aligned_cols=82 Identities=9% Similarity=0.180 Sum_probs=51.1
Q ss_pred HHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEEEEEcCCCchHHHHHHHHHc
Q 026225 91 SLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEVAVVEGKEKGPAIVEEARKQ 170 (241)
Q Consensus 91 A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~~~~G~~~~~~I~~~a~~~ 170 (241)
|+..|.+.+.++.++.--.... . ++.+.+++ +++++........-...+++.+++.
T Consensus 86 al~~a~~~~~kIavvg~~~~~~---------------~----~~~~~~ll-----~~~i~~~~~~~~~e~~~~i~~l~~~ 141 (196)
T 2q5c_A 86 AVYNAKRFGNELALIAYKHSIV---------------D----KHEIEAML-----GVKIKEFLFSSEDEITTLISKVKTE 141 (196)
T ss_dssp HHHHHGGGCSEEEEEEESSCSS---------------C----HHHHHHHH-----TCEEEEEEECSGGGHHHHHHHHHHT
T ss_pred HHHHHHhhCCcEEEEeCcchhh---------------H----HHHHHHHh-----CCceEEEEeCCHHHHHHHHHHHHHC
Confidence 4555566667888876633221 1 12233333 5778877777665455888888899
Q ss_pred CCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEe
Q 026225 171 GVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVR 218 (241)
Q Consensus 171 ~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~ 218 (241)
+++.|| | |.++..+.++..+|.+.+.
T Consensus 142 G~~vvV-G---------------------~~~~~~~A~~~Gl~~vli~ 167 (196)
T 2q5c_A 142 NIKIVV-S---------------------GKTVTDEAIKQGLYGETIN 167 (196)
T ss_dssp TCCEEE-E---------------------CHHHHHHHHHTTCEEEECC
T ss_pred CCeEEE-C---------------------CHHHHHHHHHcCCcEEEEe
Confidence 999855 3 4455666667777766553
No 92
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=35.90 E-value=1.8e+02 Score=23.66 Aligned_cols=93 Identities=11% Similarity=0.158 Sum_probs=50.5
Q ss_pred CEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEE
Q 026225 72 RKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEV 151 (241)
Q Consensus 72 ~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~ 151 (241)
.+++|.+.+..+|..++.++. +.+-+|..|+...+...... .+..... +.++..++.. |++...
T Consensus 5 MKvvvl~SGGkDSs~al~~l~----~~G~eV~~L~~~~~~~~~s~---~~h~~~~-------e~a~~~A~~L--GIpl~~ 68 (237)
T 3rjz_A 5 ADVAVLYSGGKDSNYALYWAI----KNRFSVKFLVTMVSENEESY---MYHTINA-------NLTDLQARAL--GIPLVK 68 (237)
T ss_dssp SEEEEECCSSHHHHHHHHHHH----HTTCEEEEEEEEECC-----------CCSS-------SHHHHHHHHH--TCCEEE
T ss_pred CEEEEEecCcHHHHHHHHHHH----HcCCeEEEEEEEcCCCCCcc---ccCCccH-------HHHHHHHHHc--CCCEEE
Confidence 489999999999987777664 35667776665443221000 0000001 1122233332 677766
Q ss_pred EEEcCC---CchHHHHHHHHHcCCcEEEEccCC
Q 026225 152 AVVEGK---EKGPAIVEEARKQGVALLVLGQKK 181 (241)
Q Consensus 152 ~~~~G~---~~~~~I~~~a~~~~~dllVmG~~~ 181 (241)
.-..|. ..+ .+.+..++.+++.+|.|.--
T Consensus 69 v~~~g~~~~e~e-~l~~~l~~~~i~~vv~Gdi~ 100 (237)
T 3rjz_A 69 GFTQGEKEKEVE-DLKRVLSGLKIQGIVAGALA 100 (237)
T ss_dssp EEC------CHH-HHHHHHTTSCCSEEECC---
T ss_pred EECCCCchHHHH-HHHHHHHhcCCcEEEECCcc
Confidence 666554 333 67777777799999999743
No 93
>1xw8_A UPF0271 protein YBGL; NESG, northeast structural genomics consortium, structural genomics, protein structure initiative, PSI, X-RAY; 2.00A {Escherichia coli} SCOP: c.6.2.5
Probab=35.85 E-value=1.5e+02 Score=24.43 Aligned_cols=135 Identities=10% Similarity=0.051 Sum_probs=78.4
Q ss_pred EeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCC--CCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEEEE
Q 026225 76 IVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNN--KQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEVAV 153 (241)
Q Consensus 76 VavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~~ 153 (241)
|+..+--.....++..+.+|.+.+-.|- -|.-.|+.. ......-..++........+..++.++... |.++..+=
T Consensus 28 IACGfHAGDp~~M~~Tv~lA~~~gV~IG-AHPgypDl~GFGRR~m~~s~~el~~~v~YQiGAL~a~a~~~--G~~l~hVK 104 (252)
T 1xw8_A 28 IACGFHAGDAQIMQACVREAIKNGVAIG-AHPSFPDRENFGRSAMQLPPETVYAQTLYQIGALATIARAQ--GGVMRHVK 104 (252)
T ss_dssp EECSSSSCCHHHHHHHHHHHHHHTCEEE-EECCCC-------CCCCCCHHHHHHHHHHHHHHHHHHHHHT--TCCEEEEC
T ss_pred HhhcccCCCHHHHHHHHHHHHHcCCeee-cCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHc--CCEeEEeC
Confidence 4444433334456666667666664443 233333321 111112223333344444557778888875 77776553
Q ss_pred Ec---------CCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEE--EeCCCc
Q 026225 154 VE---------GKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVA--VRRKSK 222 (241)
Q Consensus 154 ~~---------G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlv--V~~~~~ 222 (241)
-. ......+|++.+...+++|+++|.. ||......+....+++. +-++..
T Consensus 105 PHGALYN~~a~d~~~A~av~~av~~~d~~L~l~~l~-------------------gs~~~~~A~~~Gl~~~~E~FADR~Y 165 (252)
T 1xw8_A 105 PHGMLYNQAAKEAQLADAIARAVYACDPALILVGLA-------------------GSELIRAGKQYGLTTREEVFADRGY 165 (252)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHHHHHCTTCEEEEET-------------------TSHHHHHHHHTTCCEEEEECTTSCB
T ss_pred cCHHHHHHHhhCHHHHHHHHHHHHHhCCCcEEEecC-------------------ChHHHHHHHHcCCcEEEEEeecccc
Confidence 33 2345668999999999999999944 56667777788888774 355666
Q ss_pred CCCCeEEecc
Q 026225 223 KLGGYLITTK 232 (241)
Q Consensus 223 ~~~~~li~t~ 232 (241)
..+|.|+..+
T Consensus 166 ~~dG~LvpR~ 175 (252)
T 1xw8_A 166 QADGSLVPRS 175 (252)
T ss_dssp CTTSSBCCTT
T ss_pred CCCCCEeccC
Confidence 6677766654
No 94
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=34.35 E-value=1.8e+02 Score=23.32 Aligned_cols=65 Identities=9% Similarity=0.091 Sum_probs=35.2
Q ss_pred HHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEEEEEcCCCchHHHHHHHH
Q 026225 89 QWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEVAVVEGKEKGPAIVEEAR 168 (241)
Q Consensus 89 ~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~~~~G~~~~~~I~~~a~ 168 (241)
-.|+..|.+.+.+|.++.--.... . ++.+.+++ +++++........-...+++.++
T Consensus 96 l~aL~~a~~~~~kIavVg~~~~~~---------------~----~~~i~~ll-----~~~i~~~~~~~~ee~~~~i~~l~ 151 (225)
T 2pju_A 96 LQFLAKAGKLTSSIGVVTYQETIP---------------A----LVAFQKTF-----NLRLDQRSYITEEDARGQINELK 151 (225)
T ss_dssp HHHHHHTTCTTSCEEEEEESSCCH---------------H----HHHHHHHH-----TCCEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCcEEEEeCchhhh---------------H----HHHHHHHh-----CCceEEEEeCCHHHHHHHHHHHH
Confidence 345666777777888776533211 1 12222222 45666666655433346666666
Q ss_pred HcCCcEEEE
Q 026225 169 KQGVALLVL 177 (241)
Q Consensus 169 ~~~~dllVm 177 (241)
+.+++.||=
T Consensus 152 ~~G~~vVVG 160 (225)
T 2pju_A 152 ANGTEAVVG 160 (225)
T ss_dssp HTTCCEEEE
T ss_pred HCCCCEEEC
Confidence 677776543
No 95
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=33.35 E-value=1.1e+02 Score=21.56 Aligned_cols=63 Identities=16% Similarity=0.081 Sum_probs=36.0
Q ss_pred HHHHHHHHhhCCCccEEEEEE-cCCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCc
Q 026225 134 HSLKNMCQQKRPEVQFEVAVV-EGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADC 212 (241)
Q Consensus 134 ~~~~~~~~~~~~~v~v~~~~~-~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~ 212 (241)
..+++.++.+ |+++++.-. .+. .. . .+ .++|+|++|.+=+..... .........+
T Consensus 24 ~km~~~a~~~--gi~v~i~a~~~~~-~~-~---~~--~~~DvvLLgPQV~y~~~~---------------ik~~~~~~~i 79 (108)
T 3nbm_A 24 NAINEGANLT--EVRVIANSGAYGA-HY-D---IM--GVYDLIILAPQVRSYYRE---------------MKVDAERLGI 79 (108)
T ss_dssp HHHHHHHHHH--TCSEEEEEEETTS-CT-T---TG--GGCSEEEECGGGGGGHHH---------------HHHHHTTTTC
T ss_pred HHHHHHHHHC--CCceEEEEcchHH-HH-h---hc--cCCCEEEEChHHHHHHHH---------------HHHHhhhcCC
Confidence 3444445544 677776543 333 22 1 21 358999999775443332 2444555679
Q ss_pred eEEEEeCC
Q 026225 213 MAVAVRRK 220 (241)
Q Consensus 213 pVlvV~~~ 220 (241)
||.+++..
T Consensus 80 pV~vI~~~ 87 (108)
T 3nbm_A 80 QIVATRGM 87 (108)
T ss_dssp EEEECCHH
T ss_pred cEEEeCHH
Confidence 99998654
No 96
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=33.32 E-value=2.1e+02 Score=23.90 Aligned_cols=88 Identities=14% Similarity=0.148 Sum_probs=50.8
Q ss_pred CCCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccE
Q 026225 70 SGRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQF 149 (241)
Q Consensus 70 ~~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v 149 (241)
...++||++.+ -+|.-|+..+ .+.|.++..+|+.. . . ...+.+.+..+.+ ..+..+..+
T Consensus 178 ~~~kvlvllSG-vDS~vaa~ll----~~~G~~v~~v~~~~--~--~--------~~~~~a~~~a~~l----~~~~~~~~i 236 (307)
T 1vbk_A 178 TEGRMIGILHD-ELSALAIFLM----MKRGVEVIPVYIGK--D--D--------KNLEKVRSLWNLL----KRYSYGSKG 236 (307)
T ss_dssp TTCEEEEECSS-HHHHHHHHHH----HHBTCEEEEEEESC--S--S--------HHHHHHHHHHHHH----HTTCTTSCC
T ss_pred CCCcEEEEEeC-CcHHHHHHHH----HhCCCeEEEEEEEE--C--H--------HHHHHHHHHHHHH----hhhccCCCC
Confidence 34689999999 8887555444 34688999999961 1 1 0122222222222 211011233
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCcEEEEccCC
Q 026225 150 EVAVVEGKEKGPAIVEEARKQGVALLVLGQKK 181 (241)
Q Consensus 150 ~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~ 181 (241)
...++.. .. .+.++|++.++|.|+.|.+.
T Consensus 237 ~~~vv~~--~~-~~~~~A~~~ga~~I~tG~~~ 265 (307)
T 1vbk_A 237 FLVVAES--FD-RVLKLIRDFGVKGVIKGLRP 265 (307)
T ss_dssp CCEEESS--HH-HHHHHHHHHTCCEEECCCCG
T ss_pred cEEEeCC--CH-HHHHHHHHcCCCEEEECccc
Confidence 3344431 23 34489999999999999763
No 97
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=33.32 E-value=1.2e+02 Score=25.23 Aligned_cols=72 Identities=6% Similarity=-0.010 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhhCCCccEEEEEEcCCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHh-cC
Q 026225 132 FVHSLKNMCQQKRPEVQFEVAVVEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQ-NA 210 (241)
Q Consensus 132 ~l~~~~~~~~~~~~~v~v~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~-~a 210 (241)
.++++...+... +++++....+.......+.+.+.+ ++|.||.. -+.+.+.. ++..++. ..
T Consensus 27 ~~~~i~~~l~~~--~~~~~~~~t~~~~~a~~~~~~~~~-~~d~vv~~-GGDGTl~~--------------v~~~l~~~~~ 88 (304)
T 3s40_A 27 NLTKIVPPLAAA--FPDLHILHTKEQGDATKYCQEFAS-KVDLIIVF-GGDGTVFE--------------CTNGLAPLEI 88 (304)
T ss_dssp HHHHHHHHHHHH--CSEEEEEECCSTTHHHHHHHHHTT-TCSEEEEE-ECHHHHHH--------------HHHHHTTCSS
T ss_pred HHHHHHHHHHHc--CCeEEEEEccCcchHHHHHHHhhc-CCCEEEEE-ccchHHHH--------------HHHHHhhCCC
Confidence 334455555554 677777666655444456555543 77776653 23233332 3333433 25
Q ss_pred CceEEEEeCCC
Q 026225 211 DCMAVAVRRKS 221 (241)
Q Consensus 211 ~~pVlvV~~~~ 221 (241)
.+|+.++|-..
T Consensus 89 ~~~l~iiP~Gt 99 (304)
T 3s40_A 89 RPTLAIIPGGT 99 (304)
T ss_dssp CCEEEEEECSS
T ss_pred CCcEEEecCCc
Confidence 78888888664
No 98
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=32.35 E-value=78 Score=24.75 Aligned_cols=22 Identities=9% Similarity=0.309 Sum_probs=18.9
Q ss_pred CCHHHHHHhcCCceEEEEeCCC
Q 026225 200 GSFVEYCIQNADCMAVAVRRKS 221 (241)
Q Consensus 200 Gsv~~~vi~~a~~pVlvV~~~~ 221 (241)
|+++.++-++.+.||+-++-..
T Consensus 59 Ggta~~lr~~~~iPVV~I~~s~ 80 (196)
T 2q5c_A 59 GATSDYIKKSVSIPSISIKVTR 80 (196)
T ss_dssp HHHHHHHHTTCSSCEEEECCCH
T ss_pred ChHHHHHHHhCCCCEEEEcCCH
Confidence 7789999999999999997654
No 99
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=32.29 E-value=1.9e+02 Score=22.99 Aligned_cols=98 Identities=15% Similarity=0.135 Sum_probs=56.9
Q ss_pred CCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEE
Q 026225 71 GRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFE 150 (241)
Q Consensus 71 ~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~ 150 (241)
+.||.|-+.++-....+|-.+... .....+|.+|-...+.. ..++.+++. |+++.
T Consensus 2 m~riavl~Sg~Gsnl~ali~~~~~-~~l~~eI~~Visn~~~a----------------------~v~~~A~~~--gIp~~ 56 (211)
T 3p9x_A 2 MKRVAIFASGSGTNAEAIIQSQKA-GQLPCEVALLITDKPGA----------------------KVVERVKVH--EIPVC 56 (211)
T ss_dssp -CEEEEECCTTCHHHHHHHHHHHT-TCCSSEEEEEEESCSSS----------------------HHHHHHHTT--TCCEE
T ss_pred CCEEEEEEeCCchHHHHHHHHHHc-CCCCcEEEEEEECCCCc----------------------HHHHHHHHc--CCCEE
Confidence 367888888876666677666542 23446777665533211 122333332 67764
Q ss_pred EEEEcC-CC---chHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhc
Q 026225 151 VAVVEG-KE---KGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWA 193 (241)
Q Consensus 151 ~~~~~G-~~---~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~ 193 (241)
..-... .. .++.+++..++.++|+||+..-++=--..++-.|.
T Consensus 57 ~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~agy~~Il~~~~l~~~~ 103 (211)
T 3p9x_A 57 ALDPKTYPSKEAYEIEVVQQLKEKQIDFVVLAGYMRLVGPTLLGAYE 103 (211)
T ss_dssp ECCGGGSSSHHHHHHHHHHHHHHTTCCEEEESSCCSCCCHHHHHHHT
T ss_pred EeChhhcCchhhhHHHHHHHHHhcCCCEEEEeCchhhcCHHHHhhcc
Confidence 332211 11 13578999999999999998776544444554443
No 100
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=31.90 E-value=1.6e+02 Score=23.70 Aligned_cols=53 Identities=11% Similarity=0.104 Sum_probs=34.9
Q ss_pred CccEEEEEEcCCCchHHHHHHHHH----cCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeCCC
Q 026225 146 EVQFEVAVVEGKEKGPAIVEEARK----QGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRKS 221 (241)
Q Consensus 146 ~v~v~~~~~~G~~~~~~I~~~a~~----~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~~ 221 (241)
+.+.++.++++. .+ .-+..|++ .++|.||= + |+++.++-++.+.||+-++-..
T Consensus 36 ~~~~~I~vi~~~-le-~av~~a~~~~~~~~~dVIIS--R-------------------Ggta~~Lr~~~~iPVV~I~vs~ 92 (225)
T 2pju_A 36 DHLANITPIQLG-FE-KAVTYIRKKLANERCDAIIA--A-------------------GSNGAYLKSRLSVPVILIKPSG 92 (225)
T ss_dssp TTTCEEEEECCC-HH-HHHHHHHHHTTTSCCSEEEE--E-------------------HHHHHHHHTTCSSCEEEECCCH
T ss_pred CCCceEEEecCc-HH-HHHHHHHHHHhcCCCeEEEe--C-------------------ChHHHHHHhhCCCCEEEecCCH
Confidence 445666777766 33 33444433 35785553 2 7799999999999999997654
No 101
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=31.47 E-value=1.2e+02 Score=25.61 Aligned_cols=73 Identities=8% Similarity=-0.068 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhhCCCccEEEEEEcCCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHH-hcC
Q 026225 132 FVHSLKNMCQQKRPEVQFEVAVVEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCI-QNA 210 (241)
Q Consensus 132 ~l~~~~~~~~~~~~~v~v~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi-~~a 210 (241)
..+++...+... +++++............+.+.+...++|+||.. -|.+.+.. ++..++ ...
T Consensus 43 ~~~~i~~~L~~~--g~~~~~~~t~~~~~a~~~~~~~~~~~~d~vvv~-GGDGTv~~--------------v~~~l~~~~~ 105 (337)
T 2qv7_A 43 ELPDALIKLEKA--GYETSAYATEKIGDATLEAERAMHENYDVLIAA-GGDGTLNE--------------VVNGIAEKPN 105 (337)
T ss_dssp HHHHHHHHHHHT--TEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEE-ECHHHHHH--------------HHHHHTTCSS
T ss_pred HHHHHHHHHHHc--CCeEEEEEecCcchHHHHHHHHhhcCCCEEEEE-cCchHHHH--------------HHHHHHhCCC
Confidence 344555555543 566665554443223244444445577876653 22233322 334443 245
Q ss_pred CceEEEEeCCC
Q 026225 211 DCMAVAVRRKS 221 (241)
Q Consensus 211 ~~pVlvV~~~~ 221 (241)
.+|+.++|-+.
T Consensus 106 ~~pl~iIP~GT 116 (337)
T 2qv7_A 106 RPKLGVIPMGT 116 (337)
T ss_dssp CCEEEEEECSS
T ss_pred CCcEEEecCCc
Confidence 78888887653
No 102
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A
Probab=31.39 E-value=1.3e+02 Score=26.61 Aligned_cols=76 Identities=12% Similarity=0.189 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHH-HHHHHHHHHhhCCCccEEEEEEcCCCc
Q 026225 81 SNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEF-VHSLKNMCQQKRPEVQFEVAVVEGKEK 159 (241)
Q Consensus 81 s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~v~v~~~~~~G~~~ 159 (241)
...+++.+++|.++|.+...+|+++|=.. . . ....+ .+...+..+ .+|+|+++..+++.-
T Consensus 185 r~~~eRIar~AFe~A~~rrkkVT~v~KaN--V-------------l-~t~glfr~~~~eva~-eYPdV~~~~~~VD~~-- 245 (390)
T 3u1h_A 185 REEIERIIRKAFELALTRKKKVTSVDKAN--V-------------L-ESSRLWREVAEEVAK-EYPDVELEHMLVDNA-- 245 (390)
T ss_dssp HHHHHHHHHHHHHHHHTTTSEEEEEECTT--T-------------C-HHHHHHHHHHHHHHT-TCTTSEEEEEEHHHH--
T ss_pred HHHHhHHHHHHHHHHHHcCCceEEEECCc--c-------------c-ccchHHHHHHHHHHh-HCCCCeEEeeeHHHH--
Confidence 36788999999999988877888877421 1 0 11112 222323333 458999987776533
Q ss_pred hHHHHHHH-HHcCCcEEEEc
Q 026225 160 GPAIVEEA-RKQGVALLVLG 178 (241)
Q Consensus 160 ~~~I~~~a-~~~~~dllVmG 178 (241)
..+++ +-.++|.||+.
T Consensus 246 ---amqLV~~P~~FDViVt~ 262 (390)
T 3u1h_A 246 ---AMQLIRNPRQFDVIVTE 262 (390)
T ss_dssp ---HHHHHHCGGGCSEEEEC
T ss_pred ---HHHHHhCcccCcEEEec
Confidence 23333 24578888775
No 103
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=30.02 E-value=1.5e+02 Score=24.83 Aligned_cols=98 Identities=14% Similarity=0.115 Sum_probs=56.5
Q ss_pred CCCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccE
Q 026225 70 SGRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQF 149 (241)
Q Consensus 70 ~~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v 149 (241)
..+||.|-+.++.....+|-++... .....+|.+|-...+.. .. ..++. .|+++
T Consensus 88 ~~~ri~vl~Sg~g~nl~~ll~~~~~-g~l~~~i~~Visn~p~~------------~~-----------~~A~~--~gIp~ 141 (288)
T 3obi_A 88 TRRKVMLLVSQSDHCLADILYRWRV-GDLHMIPTAIVSNHPRE------------TF-----------SGFDF--GDIPF 141 (288)
T ss_dssp SCEEEEEEECSCCHHHHHHHHHHHT-TSSCEEEEEEEESSCGG------------GS-----------CCTTT--TTCCE
T ss_pred CCcEEEEEEcCCCCCHHHHHHHHHC-CCCCeEEEEEEcCCChh------------HH-----------HHHHH--cCCCE
Confidence 4568999998887777777776542 23344555544432111 00 11222 26776
Q ss_pred EEEEEcCCC---chHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhc
Q 026225 150 EVAVVEGKE---KGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWA 193 (241)
Q Consensus 150 ~~~~~~G~~---~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~ 193 (241)
...-..... .+..+++..+++++|+||+....+=--..++-.|.
T Consensus 142 ~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivlagy~~il~~~~l~~~~ 188 (288)
T 3obi_A 142 YHFPVNKDTRRQQEAAITALIAQTHTDLVVLARYMQILSDEMSARLA 188 (288)
T ss_dssp EECCCCTTTHHHHHHHHHHHHHHHTCCEEEESSCCSCCCHHHHHHTT
T ss_pred EEeCCCcccHHHHHHHHHHHHHhcCCCEEEhhhhhhhCCHHHHhhhc
Confidence 543222211 23478899999999999998776544444554443
No 104
>2o2z_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, NAD-binding protein; HET: NAD; 2.60A {Bacillus halodurans} PDB: 2hzb_A
Probab=29.47 E-value=1.4e+02 Score=25.64 Aligned_cols=64 Identities=16% Similarity=0.140 Sum_probs=43.1
Q ss_pred ccEEEEEEcCC--CchHHHHHHHHHcCCcEEEEccCCC--CchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeCCCc
Q 026225 147 VQFEVAVVEGK--EKGPAIVEEARKQGVALLVLGQKKR--STTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRKSK 222 (241)
Q Consensus 147 v~v~~~~~~G~--~~~~~I~~~a~~~~~dllVmG~~~~--~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~~~ 222 (241)
.+++-+...+. ...+..++.++ ++|+||+|.-.- |-.-.++. ..+.+. +.++++|++.|.+-..
T Consensus 154 ~~i~~v~~~p~~~~~~p~~l~AI~--~AD~IvlgPGS~~TSI~P~Llv---------~gi~~A-i~~s~A~kV~v~Nl~t 221 (323)
T 2o2z_A 154 KKIKRVFLTPKDTKPLREGLEAIR--KADVIVIGPGSLYTSVLPNLLV---------PGICEA-IKQSTARKVYICNVMT 221 (323)
T ss_dssp SCEEEEEEESTTCCCCHHHHHHHH--HCSEEEECSSCTTTTHHHHHTS---------TTHHHH-HHHCCSEEEEECCSBC
T ss_pred CCceEEEEeCCCCCCCHHHHHHHH--hCCEEEECCCCCHHHhcccccC---------chHHHH-HHhCCCCEEEEcCCCC
Confidence 45555555543 23347777776 579999997654 44555565 667776 6778999999977643
No 105
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vml_A* 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A*
Probab=29.40 E-value=1.6e+02 Score=25.86 Aligned_cols=77 Identities=10% Similarity=0.167 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEEEEEcCCCch
Q 026225 81 SNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEVAVVEGKEKG 160 (241)
Q Consensus 81 s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~~~~G~~~~ 160 (241)
...+++.+++|.++|.+...+|+++|=... . +...-+.+...+..+ .+|+|+++..+++.-
T Consensus 178 r~~~eRIar~AFe~A~~rrkkVT~v~KaNv----l-----------~~~glf~~~~~eva~-eypdV~~~~~~VD~~--- 238 (375)
T 3vmk_A 178 RKEIRRIAKIAFESAQGRRKKVTSVDKANV----L-----------ACSVLWREVVEEVAK-DYPDVELEHIYIDNA--- 238 (375)
T ss_dssp HHHHHHHHHHHHHHHHTTTSEEEEEECTTT----C-----------HHHHHHHHHHHHHHT-TCTTSEEEEEEHHHH---
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEECchh----h-----------hhhhHHHHHHHHHHH-HCCCceEeeeeHHHH---
Confidence 367889999999999888778888774221 1 111122222333333 468999987776533
Q ss_pred HHHHHHHH-HcCCcEEEEc
Q 026225 161 PAIVEEAR-KQGVALLVLG 178 (241)
Q Consensus 161 ~~I~~~a~-~~~~dllVmG 178 (241)
..++++ -.++|.||+.
T Consensus 239 --am~lv~~P~~FDViVt~ 255 (375)
T 3vmk_A 239 --TMQLLRRPNEFDVMLCS 255 (375)
T ss_dssp --HHHHHHCGGGCSEEEEC
T ss_pred --HHHHHhCcccCcEEEEC
Confidence 233332 3478888875
No 106
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=29.11 E-value=1.4e+02 Score=20.41 Aligned_cols=47 Identities=4% Similarity=-0.096 Sum_probs=28.5
Q ss_pred HHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeCC
Q 026225 162 AIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRK 220 (241)
Q Consensus 162 ~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~ 220 (241)
..++.+++..+|+||+...-.+....+ .+...+-+...+|++++-..
T Consensus 45 ~a~~~~~~~~~dlii~d~~~~~~~~g~------------~~~~~l~~~~~~~ii~ls~~ 91 (140)
T 3cg0_A 45 EAVRCAPDLRPDIALVDIMLCGALDGV------------ETAARLAAGCNLPIIFITSS 91 (140)
T ss_dssp HHHHHHHHHCCSEEEEESSCCSSSCHH------------HHHHHHHHHSCCCEEEEECC
T ss_pred HHHHHHHhCCCCEEEEecCCCCCCCHH------------HHHHHHHhCCCCCEEEEecC
Confidence 566777778899999987643111111 12334433367899888654
No 107
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=29.09 E-value=1.3e+02 Score=22.58 Aligned_cols=27 Identities=7% Similarity=0.059 Sum_probs=21.6
Q ss_pred chHHHHHHHHHcCCcEEEEccCCCCch
Q 026225 159 KGPAIVEEARKQGVALLVLGQKKRSTT 185 (241)
Q Consensus 159 ~~~~I~~~a~~~~~dllVmG~~~~~~~ 185 (241)
..+.|++.+.+.++|+|.+........
T Consensus 57 p~e~lv~aa~~~~~diV~lS~~~~~~~ 83 (161)
T 2yxb_A 57 TPEQVAMAAVQEDVDVIGVSILNGAHL 83 (161)
T ss_dssp CHHHHHHHHHHTTCSEEEEEESSSCHH
T ss_pred CHHHHHHHHHhcCCCEEEEEeechhhH
Confidence 345899999999999999988755444
No 108
>4f2d_A L-arabinose isomerase; structural genomics, PSI-1, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: MSE RB0; 2.30A {Escherichia coli} PDB: 2ajt_A 2hxg_A
Probab=28.88 E-value=3e+02 Score=24.97 Aligned_cols=85 Identities=14% Similarity=0.072 Sum_probs=50.9
Q ss_pred CCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEEEEEc---CCCchHHHHHHH-HHcCCcEEEEccCCCCchhhHhhh
Q 026225 116 ATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEVAVVE---GKEKGPAIVEEA-RKQGVALLVLGQKKRSTTWRLFMM 191 (241)
Q Consensus 116 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~~~~---G~~~~~~I~~~a-~~~~~dllVmG~~~~~~~~~~l~~ 191 (241)
.++++..++..++++++++.+.+.. .++++++... .......+.+.+ +..++|.||+=...-+.-+.+
T Consensus 18 lyg~~~~~~v~~~~~~~~~~l~~~~-----~l~~~vv~~g~v~t~~~~~~~~~~~n~~~~vdgvi~~~~TFs~a~~~--- 89 (500)
T 4f2d_A 18 LYGPETLRQVTQHAEHVVNALNTEA-----KLPCKLVLKPLGTTPDEITAICRDANYDDRCAGLVVWLHTFSPAKMW--- 89 (500)
T ss_dssp SSCTTHHHHHHHHHHHHHHHHHHHT-----CCSSEEEECCCBCSHHHHHHHHHHHHHCTTEEEEEEECCSCCCTHHH---
T ss_pred ccCHHHHHHHHHHHHHHHHHhcccc-----CCCeEEEecCcCCCHHHHHHHHHHhccccCCcEEEEeCCcCccHHHH---
Confidence 3456667777777777766665541 2344433322 121222455555 456899999977766554333
Q ss_pred hcCCCCCCCCHHHHHHhcCCceEEEEeCC
Q 026225 192 WAGNRVPGGSFVEYCIQNADCMAVAVRRK 220 (241)
Q Consensus 192 ~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~ 220 (241)
-.+++..++|||+....
T Consensus 90 ------------i~~l~~l~~PvL~~~~q 106 (500)
T 4f2d_A 90 ------------INGLTMLNKPLLQFHTQ 106 (500)
T ss_dssp ------------HHHHHHCCSCEEEEECC
T ss_pred ------------HHHHHhcCCCEEEEeCC
Confidence 34667789999998643
No 109
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.85A {Campylobacter jejuni} SCOP: c.77.1.1 PDB: 3udo_A
Probab=28.63 E-value=1.4e+02 Score=25.93 Aligned_cols=76 Identities=9% Similarity=0.132 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEEEEEcCCCchH
Q 026225 82 NEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEVAVVEGKEKGP 161 (241)
Q Consensus 82 ~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~~~~G~~~~~ 161 (241)
..+++..++|.++|.+...+|+++|=.. . . .-..-+.+...+..+ .+|+|+++..+++.-
T Consensus 167 ~~~eRIar~AFe~A~~rrkkVT~v~KaN--v--l-----------~t~glf~~~~~eva~-eypdV~~~~~~VD~~---- 226 (361)
T 3udu_A 167 KEIERIARIAFESARIRKKKVHLIDKAN--V--L-----------ASSILWREVVANVAK-DYQDINLEYMYVDNA---- 226 (361)
T ss_dssp HHHHHHHHHHHHHHHHTTSEEEEEECTT--T--C-----------HHHHHHHHHHHHHGG-GCTTSEEEEEEHHHH----
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEECch--h--h-----------ccchHHHHHHHHHHH-HCCCCeEEeeeHHHH----
Confidence 6788999999999988777888877421 1 1 111122223333333 458999987776433
Q ss_pred HHHHHHH-HcCCcEEEEc
Q 026225 162 AIVEEAR-KQGVALLVLG 178 (241)
Q Consensus 162 ~I~~~a~-~~~~dllVmG 178 (241)
..++++ -.++|.||+.
T Consensus 227 -am~lv~~P~~FDViVt~ 243 (361)
T 3udu_A 227 -AMQIVKNPSIFDVMLCS 243 (361)
T ss_dssp -HHHHHHCGGGCSEEEEC
T ss_pred -HHHHHhCcccCcEEEec
Confidence 333332 4578888875
No 110
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate and isopropylmalate dehydrogenases family, biosynthesis; 2.25A {Arabidopsis thaliana}
Probab=28.49 E-value=1.5e+02 Score=26.24 Aligned_cols=77 Identities=10% Similarity=0.148 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEEEEEcCCCch
Q 026225 81 SNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEVAVVEGKEKG 160 (241)
Q Consensus 81 s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~~~~G~~~~ 160 (241)
...+++..++|.++|.+...+|+++|=... . +...-+.+...+. .+.+|+|+++..+++.-
T Consensus 206 r~~~eRIar~AFe~A~~rrkkVT~v~KaNV----l-----------k~sglf~~~~~ev-a~eYPdV~~~~~~VD~~--- 266 (405)
T 3r8w_A 206 AHEIDRIARVAFETARKRRGKLCSVDKANV----L-----------EASILWRKRVTAL-ASEYPDVELSHMYVDNA--- 266 (405)
T ss_dssp HHHHHHHHHHHHHHHHTTTSEEEEEECTTT----C-----------HHHHHHHHHHHHH-GGGSTTSEEEEEEHHHH---
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEEECchh----h-----------ccccHHHHHHHHH-HhHCCCCeEEeeeHHHH---
Confidence 367889999999999877778888774211 1 1111222223333 33468999987776533
Q ss_pred HHHHHHHH-HcCCcEEEEc
Q 026225 161 PAIVEEAR-KQGVALLVLG 178 (241)
Q Consensus 161 ~~I~~~a~-~~~~dllVmG 178 (241)
..++++ -.++|.||..
T Consensus 267 --amqLV~~P~~FDViVt~ 283 (405)
T 3r8w_A 267 --AMQLVRDPKQFDTIVTN 283 (405)
T ss_dssp --HHHHHHCGGGCSEEEEC
T ss_pred --HHHHHhChhhCcEEeec
Confidence 233332 4577878765
No 111
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=28.29 E-value=78 Score=24.77 Aligned_cols=34 Identities=15% Similarity=0.077 Sum_probs=26.5
Q ss_pred CEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEE
Q 026225 72 RKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVY 106 (241)
Q Consensus 72 ~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~Llh 106 (241)
++|++++-++..+.++++.+..+.. .+.++.++-
T Consensus 2 k~IllgvTGs~aa~k~~~l~~~L~~-~g~~V~vv~ 35 (189)
T 2ejb_A 2 QKIALCITGASGVIYGIKLLQVLEE-LDFSVDLVI 35 (189)
T ss_dssp CEEEEEECSSTTHHHHHHHHHHHHH-TTCEEEEEE
T ss_pred CEEEEEEECHHHHHHHHHHHHHHHH-CCCEEEEEE
Confidence 6899999999888888888766644 477776654
No 112
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=27.57 E-value=2.3e+02 Score=22.37 Aligned_cols=94 Identities=14% Similarity=0.097 Sum_probs=51.9
Q ss_pred CEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEE
Q 026225 72 RKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEV 151 (241)
Q Consensus 72 ~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~ 151 (241)
+||.|-+.++-....+|-.+... ...+.+|.+|-..++.. .. .+.+++. |+++..
T Consensus 1 ~riaVl~SG~Gs~L~aLi~~~~~-~~~~~~I~~Vvs~~~~~---------------~~-------~~~A~~~--gIp~~~ 55 (209)
T 1meo_A 1 ARVAVLISGTGSNLQALIDSTRE-PNSSAQIDIVISNKAAV---------------AG-------LDKAERA--GIPTRV 55 (209)
T ss_dssp CEEEEEESSSCTTHHHHHHHHHS-TTCSCEEEEEEESSTTC---------------HH-------HHHHHHT--TCCEEE
T ss_pred CeEEEEEECCchHHHHHHHHHhc-CCCCcEEEEEEeCCCCh---------------HH-------HHHHHHc--CCCEEE
Confidence 36888888876666666554332 12345666665543321 11 1223332 677653
Q ss_pred EEEcC-CC---chHHHHHHHHHcCCcEEEEccCCCCchhhHhh
Q 026225 152 AVVEG-KE---KGPAIVEEARKQGVALLVLGQKKRSTTWRLFM 190 (241)
Q Consensus 152 ~~~~G-~~---~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~ 190 (241)
.-... .. .++.+.+..++.++|+||+..-++=--..++-
T Consensus 56 ~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~a~y~~il~~~~l~ 98 (209)
T 1meo_A 56 INHKLYKNRVEFDSAIDLVLEEFSIDIVCLAGFMRILSGPFVQ 98 (209)
T ss_dssp CCGGGSSSHHHHHHHHHHHHHHTTCCEEEEESCCSCCCHHHHH
T ss_pred ECccccCchhhhhHHHHHHHHhcCCCEEEEcchhhhCCHHHHh
Confidence 22111 11 12478899999999999998766533333443
No 113
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=27.44 E-value=81 Score=25.18 Aligned_cols=35 Identities=14% Similarity=0.171 Sum_probs=27.5
Q ss_pred CCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEE
Q 026225 71 GRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVY 106 (241)
Q Consensus 71 ~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~Llh 106 (241)
.++|+++|-++..+.++++.+..+. +.+.+|.++-
T Consensus 4 ~k~IllgvTGaiaa~k~~~ll~~L~-~~g~eV~vv~ 38 (209)
T 3zqu_A 4 PERITLAMTGASGAQYGLRLLDCLV-QEEREVHFLI 38 (209)
T ss_dssp CSEEEEEECSSSCHHHHHHHHHHHH-HTTCEEEEEE
T ss_pred CCEEEEEEECHHHHHHHHHHHHHHH-HCCCEEEEEE
Confidence 3799999999999998888876664 4577876654
No 114
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=27.19 E-value=1.3e+02 Score=21.76 Aligned_cols=47 Identities=4% Similarity=0.030 Sum_probs=31.8
Q ss_pred hHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcC--CceEEEE
Q 026225 160 GPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNA--DCMAVAV 217 (241)
Q Consensus 160 ~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a--~~pVlvV 217 (241)
.+.|++.+.+.++|+|++.+........ + -.+.+.+-... +++|++=
T Consensus 43 ~e~~v~~a~~~~~d~v~lS~~~~~~~~~--~---------~~~i~~l~~~g~~~i~v~vG 91 (137)
T 1ccw_A 43 QELFIKAAIETKADAILVSSLYGQGEID--C---------KGLRQKCDEAGLEGILLYVG 91 (137)
T ss_dssp HHHHHHHHHHHTCSEEEEEECSSTHHHH--H---------TTHHHHHHHTTCTTCEEEEE
T ss_pred HHHHHHHHHhcCCCEEEEEecCcCcHHH--H---------HHHHHHHHhcCCCCCEEEEE
Confidence 4499999999999999998876443332 2 45666664432 3666554
No 115
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X*
Probab=26.94 E-value=1.5e+02 Score=25.81 Aligned_cols=78 Identities=9% Similarity=0.106 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHhhccCCC-EEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEEEEEcCCCc
Q 026225 81 SNEAKGALQWSLTHTVQSQD-KVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEVAVVEGKEK 159 (241)
Q Consensus 81 s~~s~~al~~A~~~a~~~~~-~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~~~~G~~~ 159 (241)
...+++..++|.++|.+.+- +|+++|=...-. . .... +.+.+.+..+ .+|+++++..+++.-
T Consensus 165 ~~~~eRIar~AFe~A~~r~~kkVt~v~KaNvlk--~---------s~gl---f~~~~~eva~-eypdv~~~~~~vD~~-- 227 (364)
T 3flk_A 165 RRGVDRILKYAFDLAEKRERKHVTSATKSNGMA--I---------SMPY---WDKRTEAMAA-HYPHVSWDKQHIDIL-- 227 (364)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCEEEEEECTTTST--T---------HHHH---HHHHHHHHHT-TCTTCEEEEEEHHHH--
T ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEEECcchhh--h---------HHHH---HHHHHHHHHH-HCCCceEEeeEHHHH--
Confidence 36788999999999988765 688887432111 0 0111 1222223333 358999887776533
Q ss_pred hHHHHHHHH-HcCCcEEEEc
Q 026225 160 GPAIVEEAR-KQGVALLVLG 178 (241)
Q Consensus 160 ~~~I~~~a~-~~~~dllVmG 178 (241)
..++++ -.++|.||..
T Consensus 228 ---am~lv~~P~~FDVivt~ 244 (364)
T 3flk_A 228 ---CARFVLQPERFDVVVAS 244 (364)
T ss_dssp ---HHHHHHCGGGCSEEEEC
T ss_pred ---HHHHHhCcccCcEEEec
Confidence 233332 3578877775
No 116
>2ppv_A Uncharacterized protein; putative phosphotransferase, structural genomics, joint CENT structural genomics, JCSG; 2.00A {Staphylococcus epidermidis}
Probab=26.80 E-value=1.2e+02 Score=26.12 Aligned_cols=63 Identities=17% Similarity=0.160 Sum_probs=41.6
Q ss_pred ccEEEEEEcCC--CchHHHHHHHHHcCCcEEEEccCCC--CchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeCCC
Q 026225 147 VQFEVAVVEGK--EKGPAIVEEARKQGVALLVLGQKKR--STTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRKS 221 (241)
Q Consensus 147 v~v~~~~~~G~--~~~~~I~~~a~~~~~dllVmG~~~~--~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~~ 221 (241)
.+++-+...+. ...+..++.++ ++|+||+|.-.- |-.-.++. ..+.+. +.++++|++.|.+-.
T Consensus 153 ~~i~~v~l~p~~~~~~p~~l~AI~--~AD~IvlgPGS~~TSI~P~Llv---------~gi~~A-i~~s~A~kV~v~N~~ 219 (332)
T 2ppv_A 153 KKIDRVFLEPSDVEPMNEAIEALE--QADLIVLGPGSLYTSVISNLCV---------KGISEA-LLRTSAPKLYVSNVM 219 (332)
T ss_dssp SCEEEEEEESCCCCCCHHHHHHHH--HCSEEEECSSCCCCCCHHHHTS---------HHHHHH-HHHCCSCEEEECCSB
T ss_pred CCceEEEEeCCCCCCCHHHHHHHH--hCCEEEECCCCCHHHhcccccC---------chHHHH-HHhCCCCEEEEcCCC
Confidence 45655555543 23347777776 579999997654 44444554 555555 677999999997754
No 117
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=26.12 E-value=1.8e+02 Score=23.09 Aligned_cols=73 Identities=10% Similarity=0.086 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHhhCCCccEEEEEEcC--CC-chHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHH
Q 026225 129 GYEFVHSLKNMCQQKRPEVQFEVAVVEG--KE-KGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEY 205 (241)
Q Consensus 129 ~~~~l~~~~~~~~~~~~~v~v~~~~~~G--~~-~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~ 205 (241)
..+++..+.+.+.+. |.++.+....+ +. ....+++.+...++|-||+.......... ..+.
T Consensus 20 ~~~~~~g~~~~a~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~--------------~~~~ 83 (304)
T 3o1i_D 20 WLSVNYGMVSEAEKQ--GVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPHAYEH--------------NLKS 83 (304)
T ss_dssp HHHHHHHHHHHHHHH--TCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTTSSTT--------------THHH
T ss_pred HHHHHHHHHHHHHHc--CCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHH--------------HHHH
Confidence 344555566666654 67766655554 31 22245565666789999987654432222 2233
Q ss_pred HHhcCCceEEEEeC
Q 026225 206 CIQNADCMAVAVRR 219 (241)
Q Consensus 206 vi~~a~~pVlvV~~ 219 (241)
+. ..+||+++-.
T Consensus 84 -~~-~~iPvV~~~~ 95 (304)
T 3o1i_D 84 -WV-GNTPVFATVN 95 (304)
T ss_dssp -HT-TTSCEEECSS
T ss_pred -Hc-CCCCEEEecC
Confidence 34 7999999943
No 118
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=25.98 E-value=1.6e+02 Score=25.65 Aligned_cols=92 Identities=12% Similarity=0.176 Sum_probs=49.8
Q ss_pred EEEEeecCCHHHHHHHHHHHHhhccCCC---------E-----EEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHH
Q 026225 73 KIMIVVDSSNEAKGALQWSLTHTVQSQD---------K-----VVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKN 138 (241)
Q Consensus 73 ~ILVavD~s~~s~~al~~A~~~a~~~~~---------~-----l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 138 (241)
+|-|++.--..++.-++-|.++....+. . =.++|+.-+..+. .+....++.+.+
T Consensus 14 ~igi~t~t~s~se~t~~~a~~~i~~yg~~pn~~~l~~~~s~~iG~I~~~~~pd~F~------------se~~ttI~~I~~ 81 (371)
T 3qi7_A 14 KVAVVTQPLSENKVQYNMVEEMAKEYEEENKIDKDKDGQTKVKQTIKHVVLPENFT------------SNIDSAINKIVK 81 (371)
T ss_dssp EEEEEECCTTTCHHHHHHHHHHHHHHHHHTTCCC-----CCCCEEEEEEECCTTGG------------GGHHHHHHHHHG
T ss_pred EEEEEcCCcCCCHHHHHHHHHHHHHhCCCcccchhcccccccceEEEEeccCCCch------------HHHHHHHHHHHH
Confidence 7888877644444444444444433221 1 2577876554422 233334555555
Q ss_pred HHHhhCCCccEEEEEEc-CCCchHHHHHHHHHcCCcEEEEccC
Q 026225 139 MCQQKRPEVQFEVAVVE-GKEKGPAIVEEARKQGVALLVLGQK 180 (241)
Q Consensus 139 ~~~~~~~~v~v~~~~~~-G~~~~~~I~~~a~~~~~dllVmG~~ 180 (241)
.+.. +++ ...+.. ..+.....++.+++.++|.|+++..
T Consensus 82 ~a~~--~gy--k~II~n~~~~~~~~~i~~lkekrvDgIIi~~~ 120 (371)
T 3qi7_A 82 LADD--KEV--QAIVVSTDQAGLLPALQKVKEKRPEIITISAP 120 (371)
T ss_dssp GGGC--TTE--EEEEEECSSCCCHHHHHHHHHHCTTSEEEESS
T ss_pred Hhhc--CCC--eEEEEECCCcchHHHHHHHHhcCCCEEEEecc
Confidence 5554 244 444433 2222346788889889998887654
No 119
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1
Probab=25.89 E-value=93 Score=24.57 Aligned_cols=35 Identities=11% Similarity=0.047 Sum_probs=27.0
Q ss_pred CEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEE
Q 026225 72 RKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVY 106 (241)
Q Consensus 72 ~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~Llh 106 (241)
.+|++++-++..+.++++.+..+....+.+|.++-
T Consensus 1 ~~IllgvTGsiaa~k~~~ll~~L~~~~g~~V~vv~ 35 (197)
T 1sbz_A 1 MKLIVGMTGATGAPLGVALLQALREMPNVETHLVM 35 (197)
T ss_dssp CEEEEEECSSSCHHHHHHHHHHHHTCTTCEEEEEE
T ss_pred CEEEEEEeChHHHHHHHHHHHHHHhccCCEEEEEE
Confidence 37999999998888888887776544377776654
No 120
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=25.40 E-value=36 Score=23.86 Aligned_cols=32 Identities=22% Similarity=0.304 Sum_probs=14.6
Q ss_pred ccEEEEEEcCCCchHHHHHHHHHcCCcEEEEc
Q 026225 147 VQFEVAVVEGKEKGPAIVEEARKQGVALLVLG 178 (241)
Q Consensus 147 v~v~~~~~~G~~~~~~I~~~a~~~~~dllVmG 178 (241)
..+..++++.+..++.-+.+.+..++..+++-
T Consensus 51 ativvvvvddkewaekairfvkslgaqvliii 82 (134)
T 2l69_A 51 ATIVVVVVDDKEWAEKAIRFVKSLGAQVLIII 82 (134)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHCCCCEEEE
T ss_pred CeEEEEEEccHHHHHHHHHHHHhcCCeEEEEE
Confidence 33444444444444444455555555444443
No 121
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=25.16 E-value=1.5e+02 Score=22.02 Aligned_cols=35 Identities=17% Similarity=0.168 Sum_probs=22.0
Q ss_pred CccEEEEEEcCC-CchHHHHHHHHHcCCcEEEEccCCCC
Q 026225 146 EVQFEVAVVEGK-EKGPAIVEEARKQGVALLVLGQKKRS 183 (241)
Q Consensus 146 ~v~v~~~~~~G~-~~~~~I~~~a~~~~~dllVmG~~~~~ 183 (241)
|++++..-+... +.. .+.+.+. ++|.||+|+-...
T Consensus 33 g~~v~~~~~~~~~~~~-~~~~~~~--~~d~ii~Gspty~ 68 (159)
T 3fni_A 33 GVGVDVVDLGAAVDLQ-ELRELVG--RCTGLVIGMSPAA 68 (159)
T ss_dssp TCEEEEEESSSCCCHH-HHHHHHH--TEEEEEEECCBTT
T ss_pred CCeEEEEECcCcCCHH-HHHHHHH--hCCEEEEEcCcCC
Confidence 677665544443 333 5555444 5799999987653
No 122
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=24.19 E-value=2.2e+02 Score=23.81 Aligned_cols=70 Identities=23% Similarity=0.157 Sum_probs=35.7
Q ss_pred HHHHHHHhhCCCccEEEEEEcCCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHh---cCC
Q 026225 135 SLKNMCQQKRPEVQFEVAVVEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQ---NAD 211 (241)
Q Consensus 135 ~~~~~~~~~~~~v~v~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~---~a~ 211 (241)
++...+... ++++.............+.+.+...++|+||.. -|.+.+.. ++..++. ...
T Consensus 48 ~i~~~l~~~--g~~~~~~~t~~~~~~~~~~~~~~~~~~d~vvv~-GGDGTl~~--------------v~~~l~~~~~~~~ 110 (332)
T 2bon_A 48 EAIMLLREE--GMTIHVRVTWEKGDAARYVEEARKFGVATVIAG-GGDGTINE--------------VSTALIQCEGDDI 110 (332)
T ss_dssp HHHHHHHTT--TCCEEEEECCSTTHHHHHHHHHHHHTCSEEEEE-ESHHHHHH--------------HHHHHHHCCSSCC
T ss_pred HHHHHHHHc--CCcEEEEEecCcchHHHHHHHHHhcCCCEEEEE-ccchHHHH--------------HHHHHhhcccCCC
Confidence 344444443 677766554433222244444444567866553 12233322 4455553 457
Q ss_pred ceEEEEeCCC
Q 026225 212 CMAVAVRRKS 221 (241)
Q Consensus 212 ~pVlvV~~~~ 221 (241)
+|+.++|-..
T Consensus 111 ~plgiiP~Gt 120 (332)
T 2bon_A 111 PALGILPLGT 120 (332)
T ss_dssp CEEEEEECSS
T ss_pred CeEEEecCcC
Confidence 7888887653
No 123
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=23.94 E-value=1.8e+02 Score=22.59 Aligned_cols=27 Identities=11% Similarity=0.076 Sum_probs=21.1
Q ss_pred CCchHHHHHHHHHcCCcEEEEccCCCC
Q 026225 157 KEKGPAIVEEARKQGVALLVLGQKKRS 183 (241)
Q Consensus 157 ~~~~~~I~~~a~~~~~dllVmG~~~~~ 183 (241)
+...+.|++.+++.++|+|.+......
T Consensus 125 ~vp~~~l~~~~~~~~~d~v~lS~~~~~ 151 (210)
T 1y80_A 125 DIEPGKFVEAVKKYQPDIVGMSALLTT 151 (210)
T ss_dssp SBCHHHHHHHHHHHCCSEEEEECCSGG
T ss_pred CCCHHHHHHHHHHcCCCEEEEeccccc
Confidence 334459999999999999999876433
No 124
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A
Probab=23.31 E-value=1.8e+02 Score=25.08 Aligned_cols=77 Identities=9% Similarity=0.129 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHH-HHHHHHHHHHhhCCCccEEEEEEcCCCc
Q 026225 81 SNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYE-FVHSLKNMCQQKRPEVQFEVAVVEGKEK 159 (241)
Q Consensus 81 s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~v~v~~~~~~G~~~ 159 (241)
.+.+++..++|.++|.+...+|+++|=... .+...- +.+.+.+..+ .+|++.++..+++.
T Consensus 153 ~~~~eRiar~AFe~A~~rrkkVt~v~KaNv---------------lk~s~glf~~~~~eva~-eyp~i~~~~~~vD~--- 213 (337)
T 1w0d_A 153 AFGVRRVVADAFERARRRRKHLTLVHKTNV---------------LTFAGGLWLRTVDEVGE-CYPDVEVAYQHVDA--- 213 (337)
T ss_dssp HHHHHHHHHHHHHHHHHTTSEEEEEECTTT---------------SHHHHHHHHHHHHHHHT-TCTTSEEEEEEHHH---
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEEECCcc---------------chhhhHHHHHHHHHHHH-HCCceEEEEEEHHH---
Confidence 467889999999999888778888874221 111221 2222333333 45899988777643
Q ss_pred hHHHHHHHH-HcCCcEEEEc
Q 026225 160 GPAIVEEAR-KQGVALLVLG 178 (241)
Q Consensus 160 ~~~I~~~a~-~~~~dllVmG 178 (241)
...++++ -.++|.||..
T Consensus 214 --~~mqlv~~P~~FDVivt~ 231 (337)
T 1w0d_A 214 --ATIHMITDPGRFDVIVTD 231 (337)
T ss_dssp --HHHHHHHCGGGCSEEEEC
T ss_pred --HHHHHhhCcccccEEEEC
Confidence 3333333 3577888775
No 125
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=23.23 E-value=91 Score=21.81 Aligned_cols=48 Identities=13% Similarity=0.183 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhhCCCccEEEEEEcCCCchHHHHHHHHHcCCcEEEEccCC
Q 026225 131 EFVHSLKNMCQQKRPEVQFEVAVVEGKEKGPAIVEEARKQGVALLVLGQKK 181 (241)
Q Consensus 131 ~~l~~~~~~~~~~~~~v~v~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~ 181 (241)
+.+..++.++... |.++.++-..-. ..+.|.++.+++++.++|+--..
T Consensus 13 etlrkfkdiikkn--gfkvrtvrspqe-lkdsieelvkkynativvvvvdd 60 (134)
T 2l69_A 13 ETLRKFKDIIKKN--GFKVRTVRSPQE-LKDSIEELVKKYNATIVVVVVDD 60 (134)
T ss_dssp HHHHHHHHHHHHT--TCEEEEECSHHH-HHHHHHHHTTCCCCEEEEEECSS
T ss_pred HHHHHHHHHHHhc--CceEEEecCHHH-HHHHHHHHHHHhCCeEEEEEEcc
Confidence 3455566666654 666655433222 23367777777777777765443
No 126
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B
Probab=23.10 E-value=2e+02 Score=24.89 Aligned_cols=77 Identities=10% Similarity=0.240 Sum_probs=46.6
Q ss_pred CHHHHHHHHHHHHhhccC-CCEEEEEEEEcCCCCCCCCchhhHhhhhHHHH-HHHHHHHHHHHhhCCCccEEEEEEcCCC
Q 026225 81 SNEAKGALQWSLTHTVQS-QDKVVLVYVIKPSNNKQATGEESGKQRAPRGY-EFVHSLKNMCQQKRPEVQFEVAVVEGKE 158 (241)
Q Consensus 81 s~~s~~al~~A~~~a~~~-~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~v~v~~~~~~G~~ 158 (241)
.+.+++.+++|.++|.+. ..+|+++|=...- +... -+.+.+.+..+ .+|+|.++..+++.-
T Consensus 162 ~~~~eRiar~AFe~A~~r~rkkVt~v~KaNvl---------------k~sdglf~~~~~eva~-eypdI~~~~~~vD~~- 224 (354)
T 3blx_B 162 RDASERVIRYAFEYARAIGRPRVIVVHKSTIQ---------------RLADGLFVNVAKELSK-EYPDLTLETELIDNS- 224 (354)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEEEEESCTTT---------------CHHHHHHHHHHHHHGG-GCTTSEEEEEEHHHH-
T ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEEECCcch---------------HhHHHHHHHHHHHHHH-HCCCceEEEEEHHHH-
Confidence 467889999999999887 5678888753321 1111 12223333333 458998887776533
Q ss_pred chHHHHHHHH-HcCCc--EEEEc
Q 026225 159 KGPAIVEEAR-KQGVA--LLVLG 178 (241)
Q Consensus 159 ~~~~I~~~a~-~~~~d--llVmG 178 (241)
..++++ -.++| .||..
T Consensus 225 ----~m~lv~~P~~FD~~Vivt~ 243 (354)
T 3blx_B 225 ----VLKVVTNPSAYTDAVSVCP 243 (354)
T ss_dssp ----HHHHHHCGGGGTTEEEEEC
T ss_pred ----HHHHhhChhhCCceEEEec
Confidence 333333 34678 77775
No 127
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=23.09 E-value=1.5e+02 Score=24.83 Aligned_cols=98 Identities=15% Similarity=0.165 Sum_probs=56.5
Q ss_pred CCCEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccE
Q 026225 70 SGRKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQF 149 (241)
Q Consensus 70 ~~~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v 149 (241)
..+||.|-+.++.....+|-++... .....+|.+|-...+.. +...++. .|+++
T Consensus 87 ~~~ri~vl~Sg~g~nl~~ll~~~~~-g~l~~~i~~Visn~~~a-----------------------~~~~A~~--~gIp~ 140 (287)
T 3nrb_A 87 DRKKVVIMVSKFDHCLGDLLYRHRL-GELDMEVVGIISNHPRE-----------------------ALSVSLV--GDIPF 140 (287)
T ss_dssp CCCEEEEEECSCCHHHHHHHHHHHH-TSSCCEEEEEEESSCGG-----------------------GCCCCCC--TTSCE
T ss_pred CCcEEEEEEeCCCcCHHHHHHHHHC-CCCCeEEEEEEeCChHH-----------------------HHHHHHH--cCCCE
Confidence 4578999988877777777776543 33456776655533320 0011222 26766
Q ss_pred EEEEEcCC---CchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhc
Q 026225 150 EVAVVEGK---EKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWA 193 (241)
Q Consensus 150 ~~~~~~G~---~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~ 193 (241)
...-.... ..+..+++..+++++|++|+....+=--..++-.|.
T Consensus 141 ~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivlagym~il~~~~l~~~~ 187 (287)
T 3nrb_A 141 HYLPVTPATKAAQESQIKNIVTQSQADLIVLARYMQILSDDLSAFLS 187 (287)
T ss_dssp EECCCCGGGHHHHHHHHHHHHHHHTCSEEEESSCCSCCCHHHHHHHT
T ss_pred EEEeccCcchhhHHHHHHHHHHHhCCCEEEhhhhhhhcCHHHHhhcc
Confidence 54322211 123468888889999999998776544444444443
No 128
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=23.05 E-value=1.5e+02 Score=21.86 Aligned_cols=46 Identities=13% Similarity=0.203 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhhCCCccEEEEEEcCCCchHHHHHHHHHcCCcEEEEccCCC
Q 026225 132 FVHSLKNMCQQKRPEVQFEVAVVEGKEKGPAIVEEARKQGVALLVLGQKKR 182 (241)
Q Consensus 132 ~l~~~~~~~~~~~~~v~v~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~~ 182 (241)
+.+.+.+.+... |++++..-+...+.. .+...+. ++|.||+|+-..
T Consensus 17 ~A~~ia~~l~~~--g~~v~~~~~~~~~~~-~~~~~~~--~~d~ii~Gspty 62 (161)
T 3hly_A 17 LSQAIGRGLVKT--GVAVEMVDLRAVDPQ-ELIEAVS--SARGIVLGTPPS 62 (161)
T ss_dssp HHHHHHHHHHHT--TCCEEEEETTTCCHH-HHHHHHH--HCSEEEEECCBS
T ss_pred HHHHHHHHHHhC--CCeEEEEECCCCCHH-HHHHHHH--hCCEEEEEcCCc
Confidence 333344444432 677665555444433 5554444 479999998765
No 129
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=22.96 E-value=2.7e+02 Score=25.14 Aligned_cols=36 Identities=8% Similarity=0.090 Sum_probs=28.3
Q ss_pred CEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcC
Q 026225 72 RKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKP 110 (241)
Q Consensus 72 ~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~ 110 (241)
+++++++.+.-+|.-++.++.+.. +.++..+|+...
T Consensus 228 ~~vvvalSGGvDSsv~a~ll~~a~---G~~v~av~v~~g 263 (525)
T 1gpm_A 228 DKVILGLSGGVDSSVTAMLLHRAI---GKNLTCVFVDNG 263 (525)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHH---GGGEEEEEEECS
T ss_pred cceEEEecCCCCHHHHHHHHHHHh---CCCEEEEEEeCC
Confidence 799999999988887777765532 568999999754
No 130
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=22.67 E-value=3e+02 Score=22.02 Aligned_cols=75 Identities=13% Similarity=0.077 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhhCCCccEEEEEEcCCC-chHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhc
Q 026225 131 EFVHSLKNMCQQKRPEVQFEVAVVEGKE-KGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQN 209 (241)
Q Consensus 131 ~~l~~~~~~~~~~~~~v~v~~~~~~G~~-~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~ 209 (241)
+++..+.+.+.+. |..+......++. ....+++.+...++|-||+........... -.-+..
T Consensus 19 ~~~~gi~~~a~~~--g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~---------------~~~~~~ 81 (313)
T 3m9w_A 19 KDRDIFVKKAESL--GAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNV---------------VKEAKQ 81 (313)
T ss_dssp HHHHHHHHHHHHT--SCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSSTTSCHHH---------------HHHHHT
T ss_pred HHHHHHHHHHHHc--CCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHH---------------HHHHHH
Confidence 3444455555553 6766655554442 122456666678999999876543332221 223456
Q ss_pred CCceEEEEeCCCc
Q 026225 210 ADCMAVAVRRKSK 222 (241)
Q Consensus 210 a~~pVlvV~~~~~ 222 (241)
..+||+++-....
T Consensus 82 ~~iPvV~~~~~~~ 94 (313)
T 3m9w_A 82 EGIKVLAYDRMIN 94 (313)
T ss_dssp TTCEEEEESSCCT
T ss_pred CCCeEEEECCcCC
Confidence 7999999976554
No 131
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=22.53 E-value=2.9e+02 Score=21.90 Aligned_cols=77 Identities=10% Similarity=0.069 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHhhCCCccEEEEEEcC-CCch--HHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHH
Q 026225 129 GYEFVHSLKNMCQQKRPEVQFEVAVVEG-KEKG--PAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEY 205 (241)
Q Consensus 129 ~~~~l~~~~~~~~~~~~~v~v~~~~~~G-~~~~--~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~ 205 (241)
..+++..+++.+++. |+++.+..... .+.. ...++.+...++|-||+........... -.
T Consensus 18 ~~~~~~gi~~~a~~~--g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~---------------~~ 80 (297)
T 3rot_A 18 WTSLFQGAKKAAEEL--KVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIPSDTAFSKS---------------LQ 80 (297)
T ss_dssp HHHHHHHHHHHHHHH--TCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCCCSSTTHHH---------------HH
T ss_pred HHHHHHHHHHHHHHh--CcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHH---------------HH
Confidence 334455555555554 66665444331 1222 2445555667899999875543322221 22
Q ss_pred HHhcCCceEEEEeCCCc
Q 026225 206 CIQNADCMAVAVRRKSK 222 (241)
Q Consensus 206 vi~~a~~pVlvV~~~~~ 222 (241)
-+....+||+.+-....
T Consensus 81 ~~~~~giPvV~~~~~~~ 97 (297)
T 3rot_A 81 RANKLNIPVIAVDTRPK 97 (297)
T ss_dssp HHHHHTCCEEEESCCCS
T ss_pred HHHHCCCCEEEEcCCCc
Confidence 34556899999965544
No 132
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=22.38 E-value=2.9e+02 Score=21.84 Aligned_cols=83 Identities=12% Similarity=0.082 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHhhCCCccEEEEEEcCCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHh
Q 026225 129 GYEFVHSLKNMCQQKRPEVQFEVAVVEGKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQ 208 (241)
Q Consensus 129 ~~~~l~~~~~~~~~~~~~v~v~~~~~~G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~ 208 (241)
..++++.+.+.+.+. |..+.......+......++.....++|-||+....... . ..+. +.
T Consensus 26 ~~~~~~gi~~~a~~~--g~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~--~--------------~~~~-~~ 86 (289)
T 3k9c_A 26 HGDLVEQIYAAATRR--GYDVMLSAVAPSRAEKVAVQALMRERCEAAILLGTRFDT--D--------------ELGA-LA 86 (289)
T ss_dssp HHHHHHHHHHHHHHT--TCEEEEEEEBTTBCHHHHHHHHTTTTEEEEEEETCCCCH--H--------------HHHH-HH
T ss_pred HHHHHHHHHHHHHHC--CCEEEEEeCCCCHHHHHHHHHHHhCCCCEEEEECCCCCH--H--------------HHHH-HH
Confidence 444556666666654 777776666655434466666667789988886544321 1 1223 33
Q ss_pred cCCceEEEEeCCCcCCCCeEEec
Q 026225 209 NADCMAVAVRRKSKKLGGYLITT 231 (241)
Q Consensus 209 ~a~~pVlvV~~~~~~~~~~li~t 231 (241)
. .+||+++-......+-.-|.+
T Consensus 87 ~-~iPvV~i~~~~~~~~~~~V~~ 108 (289)
T 3k9c_A 87 D-RVPALVVARASGLPGVGAVRG 108 (289)
T ss_dssp T-TSCEEEESSCCSSTTSEEEEE
T ss_pred c-CCCEEEEcCCCCCCCCCEEEe
Confidence 4 899999976543333333443
No 133
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A
Probab=22.30 E-value=2e+02 Score=24.62 Aligned_cols=78 Identities=9% Similarity=0.089 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHHhhccC-CCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccEEEEEEcCCCc
Q 026225 81 SNEAKGALQWSLTHTVQS-QDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQFEVAVVEGKEK 159 (241)
Q Consensus 81 s~~s~~al~~A~~~a~~~-~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~~~~G~~~ 159 (241)
.+.+++.+++|.++|.+. ..+|+++|=...-. . .... +.+.+.+..+ .+|+|.++..+++.-
T Consensus 143 ~~~~eRiar~AF~~A~~r~rkkvt~v~KaNvlk--~---------t~gl---f~~~~~eva~-eyp~I~~~~~~vD~~-- 205 (333)
T 1x0l_A 143 KKASERIGRAALRIAEGRPRKTLHIAHKANVLP--L---------TQGL---FLDTVKEVAK-DFPLVNVQDIIVDNC-- 205 (333)
T ss_dssp HHHHHHHHHHHHHHHHTSTTCEEEEEECTTTCT--T---------HHHH---HHHHHHHHHT-TCTTSEEEEEEHHHH--
T ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEEecCccch--h---------hhHH---HHHHHHHHHH-HCCCceEEEEEHHHH--
Confidence 467899999999999887 56788887432211 0 0111 1222333333 458899887776543
Q ss_pred hHHHHHHHH-HcCCcEEEEc
Q 026225 160 GPAIVEEAR-KQGVALLVLG 178 (241)
Q Consensus 160 ~~~I~~~a~-~~~~dllVmG 178 (241)
..++++ -.++|.||..
T Consensus 206 ---~m~lv~~P~~FDVivt~ 222 (333)
T 1x0l_A 206 ---AMQLVMRPERFDVIVTT 222 (333)
T ss_dssp ---HHHHHHCGGGCSEEEEC
T ss_pred ---HHHHhhCcccceEEEEc
Confidence 333333 3467877765
No 134
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=22.26 E-value=2.9e+02 Score=21.70 Aligned_cols=76 Identities=5% Similarity=-0.102 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhhCCCccEEEEEEcCCC-chHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHh
Q 026225 130 YEFVHSLKNMCQQKRPEVQFEVAVVEGKE-KGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQ 208 (241)
Q Consensus 130 ~~~l~~~~~~~~~~~~~v~v~~~~~~G~~-~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~ 208 (241)
.+.++.+.+.+.+. |..+.+....+++ ....+++.+...++|-||+.......... . -..+.
T Consensus 21 ~~~~~gi~~~a~~~--g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~--------------~-~~~~~ 83 (291)
T 3l49_A 21 LKAYQAQIAEIERL--GGTAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLGNLDVLNP--------------W-LQKIN 83 (291)
T ss_dssp HHHHHHHHHHHHHT--TCEEEEEECTTCHHHHHHHHHHHHHHCCSEEEEESSCHHHHHH--------------H-HHHHH
T ss_pred HHHHHHHHHHHHHc--CCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHH--------------H-HHHHH
Confidence 34555666666654 6666655444442 12345566666789999986443111111 1 22345
Q ss_pred cCCceEEEEeCCCc
Q 026225 209 NADCMAVAVRRKSK 222 (241)
Q Consensus 209 ~a~~pVlvV~~~~~ 222 (241)
...+||+++-....
T Consensus 84 ~~~iPvV~~~~~~~ 97 (291)
T 3l49_A 84 DAGIPLFTVDTATP 97 (291)
T ss_dssp HTTCCEEEESCCCT
T ss_pred HCCCcEEEecCCCC
Confidence 67899999966543
No 135
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=22.24 E-value=3.2e+02 Score=22.22 Aligned_cols=76 Identities=11% Similarity=0.031 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHhhCCCccEEEEEEcCCC-chHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHH
Q 026225 129 GYEFVHSLKNMCQQKRPEVQFEVAVVEGKE-KGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCI 207 (241)
Q Consensus 129 ~~~~l~~~~~~~~~~~~~v~v~~~~~~G~~-~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi 207 (241)
..+++..+.+.+.+. |..+.......++ ....+++.....++|-||+....... . .....+
T Consensus 78 ~~~~~~gi~~~a~~~--g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-~---------------~~~~~~ 139 (338)
T 3dbi_A 78 FSELLFHAARMAEEK--GRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRFLSV-D---------------EIDDII 139 (338)
T ss_dssp HHHHHHHHHHHHHHT--TCEEEEEECTTSHHHHHHHHHHHHHTTCSEEEECCSSSCH-H---------------HHHHHH
T ss_pred HHHHHHHHHHHHHHC--CCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCCCh-H---------------HHHHHH
Confidence 344556666666654 6666555444332 12235666677899999986543221 1 223456
Q ss_pred hcCCceEEEEeCCCc
Q 026225 208 QNADCMAVAVRRKSK 222 (241)
Q Consensus 208 ~~a~~pVlvV~~~~~ 222 (241)
....+||+++-....
T Consensus 140 ~~~~iPvV~~~~~~~ 154 (338)
T 3dbi_A 140 DAHSQPIMVLNRRLR 154 (338)
T ss_dssp HHCSSCEEEESSCCS
T ss_pred HcCCCCEEEEcCCCC
Confidence 677899999965543
No 136
>1v6t_A Hypothetical UPF0271 protein PH0986; TIM-barrel, lactam utilization protein, structural genomics; 1.70A {Pyrococcus horikoshii} SCOP: c.6.2.5
Probab=22.19 E-value=3.3e+02 Score=22.42 Aligned_cols=139 Identities=8% Similarity=-0.012 Sum_probs=83.3
Q ss_pred CEEEEeecCCHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCC--CCchhhHhhhhHHHHHHHHHHHHHHHhhCCCccE
Q 026225 72 RKIMIVVDSSNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQ--ATGEESGKQRAPRGYEFVHSLKNMCQQKRPEVQF 149 (241)
Q Consensus 72 ~~ILVavD~s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v 149 (241)
..-=|+..+.-.....++..+.+|.+.+-.|- -|.-.|+.... ....-..++........+..+..++... |.++
T Consensus 29 tSANIACGfHAGDp~~M~~tv~lA~~~gV~IG-AHPgypDl~GFGRR~m~~s~~el~~~v~YQiGAL~a~a~~~--G~~l 105 (255)
T 1v6t_A 29 TSANVACGWHAGDPLVMRKTVRLAKENDVQVG-AHPGYPDLMGFGRRYMKLTPEEARNYILYQVGALYAFAKAE--GLEL 105 (255)
T ss_dssp SEEEEECSSSSCCHHHHHHHHHHHHHTTCEEE-EECCCSCTTTTTCSCCCCCHHHHHHHHHHHHHHHHHHHHHT--TCCE
T ss_pred hhhhhhccccCCCHHHHHHHHHHHHHcCCeEe-cCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHc--CCEe
Confidence 34445555544445567777778877775554 24444443111 1122223333444444557778888875 7777
Q ss_pred EEEEEc---------CCCchHHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEE--Ee
Q 026225 150 EVAVVE---------GKEKGPAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVA--VR 218 (241)
Q Consensus 150 ~~~~~~---------G~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlv--V~ 218 (241)
..+=-+ ......+|++.+...+++|+++|.. ||..+...+....+++. +-
T Consensus 106 ~hVKPHGALYN~~~~d~~~A~av~~av~~~d~~L~l~~l~-------------------gs~~~~~A~~~Gl~~~~E~FA 166 (255)
T 1v6t_A 106 QHVKPHGALYNAMVKEEDLARAVIEGILDFDKDLILVTLS-------------------NSRVADIAEEMGLKVAHEVFA 166 (255)
T ss_dssp EEECCCHHHHHHHHHCHHHHHHHHHHHHHHCTTCEEEEET-------------------TCHHHHHHHHHTCCEEEEECT
T ss_pred EEeccCHHHHHHHhhCHHHHHHHHHHHHHhCCCcEEEecC-------------------ChHHHHHHHHcCCcEEEEEee
Confidence 655333 2345678999999999999999944 55666677777777764 34
Q ss_pred CCCcCCCCeEEecc
Q 026225 219 RKSKKLGGYLITTK 232 (241)
Q Consensus 219 ~~~~~~~~~li~t~ 232 (241)
++....+|.|+..+
T Consensus 167 DR~Y~~dG~LvpR~ 180 (255)
T 1v6t_A 167 DRAYNPDGTLVPRG 180 (255)
T ss_dssp TBCBCTTSCBCC--
T ss_pred ccccCCCCCEecCC
Confidence 55566677766554
No 137
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=22.08 E-value=1.4e+02 Score=24.37 Aligned_cols=47 Identities=15% Similarity=0.162 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHhhCCCccEEEEEEcCCCchHHHHHHHHHcCCcEEEEcc
Q 026225 129 GYEFVHSLKNMCQQKRPEVQFEVAVVEGKEKGPAIVEEARKQGVALLVLGQ 179 (241)
Q Consensus 129 ~~~~l~~~~~~~~~~~~~v~v~~~~~~G~~~~~~I~~~a~~~~~dllVmG~ 179 (241)
..+.+.++++++.+. +.++.+.+--|-..+ .+. .+.+.++|.+|+|+
T Consensus 178 ~l~KI~~lr~~~~~~--~~~~~I~VDGGI~~~-ti~-~~~~aGAD~~V~GS 224 (246)
T 3inp_A 178 MLDKAKEISKWISST--DRDILLEIDGGVNPY-NIA-EIAVCGVNAFVAGS 224 (246)
T ss_dssp HHHHHHHHHHHHHHH--TSCCEEEEESSCCTT-THH-HHHTTTCCEEEESH
T ss_pred HHHHHHHHHHHHHhc--CCCeeEEEECCcCHH-HHH-HHHHcCCCEEEEeh
Confidence 344456666666654 455666666666543 554 45677999999995
No 138
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=21.62 E-value=3.1e+02 Score=21.89 Aligned_cols=33 Identities=21% Similarity=0.284 Sum_probs=23.5
Q ss_pred hHHHHHHHHHcCCcEEEEccCCCCchhhHhhhh
Q 026225 160 GPAIVEEARKQGVALLVLGQKKRSTTWRLFMMW 192 (241)
Q Consensus 160 ~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~ 192 (241)
++.+++..++.++|+||+..-++=--..++-.|
T Consensus 90 ~~~~~~~l~~~~~Dliv~agy~~IL~~~~l~~~ 122 (229)
T 3auf_A 90 DAALAERLQAYGVDLVCLAGYMRLVRGPMLTAF 122 (229)
T ss_dssp HHHHHHHHHHTTCSEEEESSCCSCCCHHHHHHS
T ss_pred cHHHHHHHHhcCCCEEEEcChhHhCCHHHHhhc
Confidence 357899999999999999877653334444433
No 139
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=21.37 E-value=1.4e+02 Score=23.21 Aligned_cols=39 Identities=8% Similarity=0.022 Sum_probs=25.7
Q ss_pred CCCEEEEeecC---CHHHHHHHHHHHHhhccCCCEEEEEEEEc
Q 026225 70 SGRKIMIVVDS---SNEAKGALQWSLTHTVQSQDKVVLVYVIK 109 (241)
Q Consensus 70 ~~~~ILVavD~---s~~s~~al~~A~~~a~~~~~~l~LlhV~~ 109 (241)
|.++|+|-+.. ...+..+++|+.+++. .+.++.++.+.+
T Consensus 1 M~k~I~vi~GS~R~~S~~~~la~~~~~~~~-~~~~~~~idl~d 42 (190)
T 3u7r_A 1 MVKTVAVMVGSLRKDSLNHKLMKVLQKLAE-GRLEFHLLHIGD 42 (190)
T ss_dssp -CEEEEEEESCCSTTCHHHHHHHHHHHHHT-TTEEEEECCGGG
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHhcc-CCCEEEEEeccc
Confidence 56788876654 2346778888888774 466777776543
No 140
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=21.32 E-value=3e+02 Score=21.62 Aligned_cols=30 Identities=27% Similarity=0.353 Sum_probs=22.1
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCchhhHhh
Q 026225 161 PAIVEEARKQGVALLVLGQKKRSTTWRLFM 190 (241)
Q Consensus 161 ~~I~~~a~~~~~dllVmG~~~~~~~~~~l~ 190 (241)
+.+++..++.++|++|+..-++=--..++-
T Consensus 70 ~~~~~~l~~~~~Dliv~a~y~~il~~~~l~ 99 (216)
T 2ywr_A 70 ERMALELKKKGVELVVLAGFMRILSHNFLK 99 (216)
T ss_dssp HHHHHHHHHTTCCEEEESSCCSCCCHHHHT
T ss_pred HHHHHHHHhcCCCEEEEeCchhhCCHHHHh
Confidence 578999999999999998766533333443
No 141
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=21.16 E-value=2.1e+02 Score=19.67 Aligned_cols=48 Identities=13% Similarity=-0.026 Sum_probs=29.1
Q ss_pred HHHHHHHH-cCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHHHhcCCceEEEEeCCC
Q 026225 162 AIVEEARK-QGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYCIQNADCMAVAVRRKS 221 (241)
Q Consensus 162 ~I~~~a~~-~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~vi~~a~~pVlvV~~~~ 221 (241)
..++.+.+ ..+|+|++...-.....++ .+...+-++..+|++++....
T Consensus 40 ~a~~~l~~~~~~dlvi~D~~l~~~~~g~------------~~~~~l~~~~~~~ii~ls~~~ 88 (140)
T 3h5i_A 40 AAVEKVSGGWYPDLILMDIELGEGMDGV------------QTALAIQQISELPVVFLTAHT 88 (140)
T ss_dssp HHHHHHHTTCCCSEEEEESSCSSSCCHH------------HHHHHHHHHCCCCEEEEESSS
T ss_pred HHHHHHhcCCCCCEEEEeccCCCCCCHH------------HHHHHHHhCCCCCEEEEECCC
Confidence 45555655 7899999987642112221 133444445678999986554
No 142
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI, protein structure initiative, joint center for structu genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1
Probab=20.95 E-value=2.1e+02 Score=24.89 Aligned_cols=76 Identities=9% Similarity=0.091 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHHhhccCCCEEEEEEEEcCCCCCCCCchhhHhhhhHHHHHH-HHHHHHHHHhhCCCccEEEEEEcCCCc
Q 026225 81 SNEAKGALQWSLTHTVQSQDKVVLVYVIKPSNNKQATGEESGKQRAPRGYEF-VHSLKNMCQQKRPEVQFEVAVVEGKEK 159 (241)
Q Consensus 81 s~~s~~al~~A~~~a~~~~~~l~LlhV~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~v~v~~~~~~G~~~ 159 (241)
.+.+++.+++|.++|.+...+|+++|=... .+ ...+ .+.+.+..+ .+|+++++..+++.
T Consensus 173 r~~~eRIar~AFe~A~~rrkkVt~v~KaNv---------------lk-t~glf~~~~~eva~-eypdV~~~~~~VD~--- 232 (366)
T 1vlc_A 173 RKTVERIARTAFEIAKNRRKKVTSVDKANV---------------LY-SSMLWRKVVNEVAR-EYPDVELTHIYVDN--- 232 (366)
T ss_dssp HHHHHHHHHHHHHHHHTTTSEEEEEECTTT---------------CH-HHHHHHHHHHHHHT-TCTTSEEEEEEHHH---
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEEECCcc---------------cc-cchHHHHHHHHHHH-HCCCceEEeeeHHH---
Confidence 367899999999999888777888775321 11 1112 222333333 46899988777643
Q ss_pred hHHHHHHHH-HcCCcEEEEc
Q 026225 160 GPAIVEEAR-KQGVALLVLG 178 (241)
Q Consensus 160 ~~~I~~~a~-~~~~dllVmG 178 (241)
...++++ -.++|.||..
T Consensus 233 --~~mqlv~~P~~FDVivt~ 250 (366)
T 1vlc_A 233 --AAMQLILKPSQFDVILTT 250 (366)
T ss_dssp --HHHHHHHCGGGCSEEEEC
T ss_pred --HHHHHhhCcccceEEEEc
Confidence 3333333 3477888775
No 143
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=20.93 E-value=3.1e+02 Score=21.54 Aligned_cols=33 Identities=15% Similarity=0.194 Sum_probs=23.2
Q ss_pred hHHHHHHHHHcCCcEEEEccCCCCchhhHhhhh
Q 026225 160 GPAIVEEARKQGVALLVLGQKKRSTTWRLFMMW 192 (241)
Q Consensus 160 ~~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~ 192 (241)
++.+++..++.++|++|+..-++=--..++-.|
T Consensus 71 ~~~~~~~l~~~~~Dliv~a~y~~il~~~~l~~~ 103 (212)
T 3av3_A 71 ESEILRELKGRQIDWIALAGYMRLIGPTLLSAY 103 (212)
T ss_dssp HHHHHHHHHHTTCCEEEESSCCSCCCHHHHHHT
T ss_pred HHHHHHHHHhcCCCEEEEchhhhhCCHHHHhhh
Confidence 347889999999999999876653333444433
No 144
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=20.79 E-value=3.2e+02 Score=21.63 Aligned_cols=73 Identities=7% Similarity=-0.063 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHhhCCCccEEEEEEcCCCch--HHHHHHHHHcCCcEEEEccCCCCchhhHhhhhcCCCCCCCCHHHHH
Q 026225 129 GYEFVHSLKNMCQQKRPEVQFEVAVVEGKEKG--PAIVEEARKQGVALLVLGQKKRSTTWRLFMMWAGNRVPGGSFVEYC 206 (241)
Q Consensus 129 ~~~~l~~~~~~~~~~~~~v~v~~~~~~G~~~~--~~I~~~a~~~~~dllVmG~~~~~~~~~~l~~~~~~~~~~Gsv~~~v 206 (241)
..+.++.+.+.+.+. |.++. +....+.. ...++.+...++|-||+.......... . -..
T Consensus 17 ~~~~~~gi~~~a~~~--g~~~~--~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~--------------~-~~~ 77 (306)
T 8abp_A 17 FQTEWKFADKAGKDL--GFEVI--KIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSA--------------I-VAK 77 (306)
T ss_dssp HHHHHHHHHHHHHHH--TEEEE--EEECCSHHHHHHHHHHHHHTTCCEEEEECSCGGGHHH--------------H-HHH
T ss_pred HHHHHHHHHHHHHHc--CCEEE--EeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCchhhHH--------------H-HHH
Confidence 334455555666654 55554 33333322 234555556789999987643222211 1 223
Q ss_pred HhcCCceEEEEeCC
Q 026225 207 IQNADCMAVAVRRK 220 (241)
Q Consensus 207 i~~a~~pVlvV~~~ 220 (241)
+....+||+++-..
T Consensus 78 ~~~~~iPvV~~~~~ 91 (306)
T 8abp_A 78 ARGYDMKVIAVDDQ 91 (306)
T ss_dssp HHHTTCEEEEESSC
T ss_pred HHHCCCcEEEeCCC
Confidence 55679999999744
Done!