BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026228
(241 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DHD|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
Length = 310
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 102/249 (40%), Gaps = 30/249 (12%)
Query: 5 SDAGFHCFAPDWLGFGFSDKPEKGYDDFDFTENEFHXXXXXXXXXXXXXYPFFLVVQ--- 61
+++G APD+ GFG SDKP D+ D+T EFH LVVQ
Sbjct: 71 AESGARVIAPDFFGFGKSDKP---VDEEDYT-FEFHRNFLLALIERLDLRNITLVVQXWG 126
Query: 62 GFLVGSYGLTWALKNPSRISKLAILNSPLTASSPLPGLFQQLRIPLLGEFTA-------Q 114
GFL GLT + +PSR +L I+N+ L F FTA
Sbjct: 127 GFL----GLTLPMADPSRFKRLIIMNACLMTDPVTQPAFSAFVTQPADGFTAWKYDLVTP 182
Query: 115 NAIMAERFIEAGSPYVLKLDKADVYRLPYLASSGPG----FALLEAARKVNFKDISSRIG 170
+ + ++F++ +P L +A Y P+ +S F + A R DIS+
Sbjct: 183 SDLRLDQFMKRWAP-TLTEAEASAYAAPFPDTSYQAGVRKFPKMVAQRDQACIDISTE-A 240
Query: 171 AGFSSGSWDKPVLVAWGISDKYLPQSV---AEEFQKGNPNVVKLQMIEGAGHMPQEDWPE 227
F W+ +A G+ DK L V + G P ++ I AGH QE +
Sbjct: 241 ISFWQNDWNGQTFMAIGMKDKLLGPDVMYPMKALINGCPEPLE---IADAGHFVQEFGEQ 297
Query: 228 KVVDGLRYF 236
+ L++F
Sbjct: 298 VAREALKHF 306
>pdb|1EDB|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|1EDD|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|1EDE|A Chain A, Refined X-Ray Structures Of Haloalkane Dehalogenase At Ph
6.2 And Ph 8.2 And Implications For The Reaction
Mechanism
pdb|2DHC|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
pdb|2DHE|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
pdb|2EDA|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|2EDC|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|2HAD|A Chain A, Crystal Structure Of Haloalkane Dehalogenase: An Enzyme To
Detoxify Halogenated Alkanes
pdb|2PKY|X Chain X, The Effect Of Deuteration On Protein Structure A High
Resolution Comparison Of Hydrogenous And Perdeuterated
Haloalkane Dehalogenase
pdb|2YXP|X Chain X, The Effect Of Deuteration On Protein Structure A High
Resolution Comparison Of Hydrogenous And Perdeuterated
Haloalkane Dehalogenase
Length = 310
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 102/249 (40%), Gaps = 30/249 (12%)
Query: 5 SDAGFHCFAPDWLGFGFSDKPEKGYDDFDFTENEFHXXXXXXXXXXXXXYPFFLVVQ--- 61
+++G APD+ GFG SDKP D+ D+T EFH LVVQ
Sbjct: 71 AESGARVIAPDFFGFGKSDKP---VDEEDYT-FEFHRNFLLALIERLDLRNITLVVQDWG 126
Query: 62 GFLVGSYGLTWALKNPSRISKLAILNSPLTASSPLPGLFQQLRIPLLGEFTA-------Q 114
GFL GLT + +PSR +L I+N+ L F FTA
Sbjct: 127 GFL----GLTLPMADPSRFKRLIIMNACLMTDPVTQPAFSAFVTQPADGFTAWKYDLVTP 182
Query: 115 NAIMAERFIEAGSPYVLKLDKADVYRLPYLASSGPG----FALLEAARKVNFKDISSRIG 170
+ + ++F++ +P L +A Y P+ +S F + A R DIS+
Sbjct: 183 SDLRLDQFMKRWAP-TLTEAEASAYAAPFPDTSYQAGVRKFPKMVAQRDQACIDISTE-A 240
Query: 171 AGFSSGSWDKPVLVAWGISDKYLPQSV---AEEFQKGNPNVVKLQMIEGAGHMPQEDWPE 227
F W+ +A G+ DK L V + G P ++ I AGH QE +
Sbjct: 241 ISFWQNDWNGQTFMAIGMKDKLLGPDVMYPMKALINGCPEPLE---IADAGHFVQEFGEQ 297
Query: 228 KVVDGLRYF 236
+ L++F
Sbjct: 298 VAREALKHF 306
>pdb|1BEE|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
Tyr
pdb|1BEZ|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
Tyr At Ph 5
Length = 310
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 102/249 (40%), Gaps = 30/249 (12%)
Query: 5 SDAGFHCFAPDWLGFGFSDKPEKGYDDFDFTENEFHXXXXXXXXXXXXXYPFFLVVQ--- 61
+++G APD+ GFG SDKP D+ D+T EFH LVVQ
Sbjct: 71 AESGARVIAPDFFGFGKSDKP---VDEEDYT-FEFHRNFLLALIERLDLRNITLVVQDWG 126
Query: 62 GFLVGSYGLTWALKNPSRISKLAILNSPLTASSPLPGLFQQLRIPLLGEFTA-------Q 114
GFL GLT + +PSR +L I+N+ L F FTA
Sbjct: 127 GFL----GLTLPMADPSRFKRLIIMNACLMTDPVTQPAFSAFVTQPADGFTAYKYDLVTP 182
Query: 115 NAIMAERFIEAGSPYVLKLDKADVYRLPYLASSGPG----FALLEAARKVNFKDISSRIG 170
+ + ++F++ +P L +A Y P+ +S F + A R DIS+
Sbjct: 183 SDLRLDQFMKRWAP-TLTEAEASAYAAPFPDTSYQAGVRKFPKMVAQRDQACIDISTE-A 240
Query: 171 AGFSSGSWDKPVLVAWGISDKYLPQSV---AEEFQKGNPNVVKLQMIEGAGHMPQEDWPE 227
F W+ +A G+ DK L V + G P ++ I AGH QE +
Sbjct: 241 ISFWQNDWNGQTFMAIGMKDKLLGPDVMYPMKALINGCPEPLE---IADAGHFVQEFGEQ 297
Query: 228 KVVDGLRYF 236
+ L++F
Sbjct: 298 VAREALKHF 306
>pdb|1CIJ|A Chain A, Haloalkane Dehalogenase Soaked With High Concentration Of
Bromide
pdb|1BE0|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Acetic Acid
Length = 310
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 102/249 (40%), Gaps = 30/249 (12%)
Query: 5 SDAGFHCFAPDWLGFGFSDKPEKGYDDFDFTENEFHXXXXXXXXXXXXXYPFFLVVQ--- 61
+++G APD+ GFG SDKP D+ D+T EFH LVVQ
Sbjct: 71 AESGARVIAPDFFGFGKSDKP---VDEEDYT-FEFHRNFLLALIERLDLRNITLVVQDWG 126
Query: 62 GFLVGSYGLTWALKNPSRISKLAILNSPLTASSPLPGLFQQLRIPLLGEFTA-------Q 114
GFL GLT + +PSR +L I+N+ L F FTA
Sbjct: 127 GFL----GLTLPMADPSRFKRLIIMNACLMTDPVTQPAFSAFVTQPADGFTAWKYDLVTP 182
Query: 115 NAIMAERFIEAGSPYVLKLDKADVYRLPYLASSGPG----FALLEAARKVNFKDISSRIG 170
+ + ++F++ +P L +A Y P+ +S F + A R DIS+
Sbjct: 183 SDLRLDQFMKRWAP-TLTEAEASAYAAPFPDTSYQAGVRKFPKMVAQRDQACIDISTE-A 240
Query: 171 AGFSSGSWDKPVLVAWGISDKYLPQSV---AEEFQKGNPNVVKLQMIEGAGHMPQEDWPE 227
F W+ +A G+ DK L V + G P ++ I AGH QE +
Sbjct: 241 ISFWQNDWNGQTFMAIGMKDKLLGPDVMYPMKALINGCPEPLE---IADAGHFVQEFGEQ 297
Query: 228 KVVDGLRYF 236
+ L++F
Sbjct: 298 VAREALKHF 306
>pdb|1B6G|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Chloride
Length = 310
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 102/249 (40%), Gaps = 30/249 (12%)
Query: 5 SDAGFHCFAPDWLGFGFSDKPEKGYDDFDFTENEFHXXXXXXXXXXXXXYPFFLVVQ--- 61
+++G APD+ GFG SDKP D+ D+T EFH LVVQ
Sbjct: 71 AESGARVIAPDFFGFGKSDKP---VDEEDYT-FEFHRNFLLALIERLDLRNITLVVQDWG 126
Query: 62 GFLVGSYGLTWALKNPSRISKLAILNSPLTASSPLPGLFQQLRIPLLGEFTA-------Q 114
GFL GLT + +PSR +L I+N+ L F FTA
Sbjct: 127 GFL----GLTLPMADPSRFKRLIIMNAXLMTDPVTQPAFSAFVTQPADGFTAWKYDLVTP 182
Query: 115 NAIMAERFIEAGSPYVLKLDKADVYRLPYLASSGPG----FALLEAARKVNFKDISSRIG 170
+ + ++F++ +P L +A Y P+ +S F + A R DIS+
Sbjct: 183 SDLRLDQFMKRWAP-TLTEAEASAYAAPFPDTSYQAGVRKFPKMVAQRDQAXIDISTE-A 240
Query: 171 AGFSSGSWDKPVLVAWGISDKYLPQSV---AEEFQKGNPNVVKLQMIEGAGHMPQEDWPE 227
F W+ +A G+ DK L V + G P ++ I AGH QE +
Sbjct: 241 ISFWQNDWNGQTFMAIGMKDKLLGPDVMYPMKALINGCPEPLE---IADAGHFVQEFGEQ 297
Query: 228 KVVDGLRYF 236
+ L++F
Sbjct: 298 VAREALKHF 306
>pdb|1HDE|A Chain A, Haloalkane Dehalogenase Mutant With Phe 172 Replaced With
Trp
pdb|1HDE|B Chain B, Haloalkane Dehalogenase Mutant With Phe 172 Replaced With
Trp
Length = 310
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 104/249 (41%), Gaps = 30/249 (12%)
Query: 5 SDAGFHCFAPDWLGFGFSDKPEKGYDDFDFTENEFHXXXXXXXXXXXXXYPFFLVVQ--- 61
+++G APD+ GFG SDKP D+ D+T EFH LVVQ
Sbjct: 71 AESGARVIAPDFFGFGKSDKP---VDEEDYT-FEFHRNFLLALIERLDLRNITLVVQDWG 126
Query: 62 GFLVGSYGLTWALKNPSRISKLAILNSPL-TASSPLPGLFQQLRIPLLG------EFTAQ 114
GFL GLT + +PSR +L I+N+ L T P + P G +
Sbjct: 127 GFL----GLTLPMADPSRFKRLIIMNACLMTDPVTQPAFSAFVTQPADGWTAWKYDLVTP 182
Query: 115 NAIMAERFIEAGSPYVLKLDKADVYRLPYLASSGPG----FALLEAARKVNFKDISSRIG 170
+ + ++F++ +P L +A Y P+ +S F + A R DIS+
Sbjct: 183 SDLRLDQFMKRWAP-TLTEAEASAYAAPFPDTSYQAGVRKFPKMVAQRDQACIDISTE-A 240
Query: 171 AGFSSGSWDKPVLVAWGISDKYLPQSV---AEEFQKGNPNVVKLQMIEGAGHMPQEDWPE 227
F W+ +A G+ DK L V + G P ++ I AGH QE +
Sbjct: 241 ISFWQNDWNGQTFMAIGMKDKLLGPDVMYPMKALINGCPEPLE---IADAGHFVQEFGEQ 297
Query: 228 KVVDGLRYF 236
+ L++F
Sbjct: 298 VAREALKHF 306
>pdb|2XT0|A Chain A, Dehalogenase Dppa From Plesiocystis Pacifica Sir-I
Length = 297
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 83/232 (35%), Gaps = 36/232 (15%)
Query: 7 AGFHCFAPDWLGFGFSDKPEKGYDDFDFTENEFHXXXXXXXXXXXXXYPFFLVVQGFLVG 66
AG APD GFG SDKP DD +T FH LV Q + G
Sbjct: 72 AGGRVVAPDLFGFGRSDKPT---DDAVYTFG-FHRRSLLAFLDALQLERVTLVCQDW-GG 126
Query: 67 SYGLTWALKNPSRISKLAILNSPLTAS-SPLPGLFQQLRIPLLGEFTAQNAIM-AERFIE 124
GLT + P + +L ++N+ L SP G F+ R +F A + + + ++
Sbjct: 127 ILGLTLPVDRPQLVDRLIVMNTALAVGLSPGKG-FESWR-----DFVANSPDLDVGKLMQ 180
Query: 125 AGSPYVLKLD-------------KADVYRLPYLASSGPGFALLEAARKVNFKDISSRIGA 171
P + + KA V R P + P E R+
Sbjct: 181 RAIPGITDAEVAAYDAPFPGPEFKAGVRRFPAIVPITPDMEGAEIGRQA----------M 230
Query: 172 GFSSGSWDKPVLVAWGISDKYLPQSVAEEFQKGNPNVVKLQMIEGAGHMPQE 223
F S W P +A G D L V ++ + ++E GH QE
Sbjct: 231 SFWSTQWSGPTFMAVGAQDPVLGPEVMGMLRQAIRGCPEPMIVEAGGHFVQE 282
>pdb|4F60|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (t148l, G171q, A172v, C176f)
Length = 299
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 91/246 (36%), Gaps = 51/246 (20%)
Query: 11 CFAPDWLGFGFSDKPEKGY--DDFDFTENEFHXXXXXXXXXXXXXYPFFLVVQGFLVGSY 68
C APD +G G SDKP+ Y DD H LV+ + +
Sbjct: 61 CIAPDLIGMGKSDKPDLDYFFDD--------HVRYLDAFIEALGLEEVVLVIHDW-GSAL 111
Query: 69 GLTWALKNPSRISKLAILN--SPLTASSPLP----GLFQQLRIPLLGE--FTAQNAIMAE 120
G WA +NP R+ +A + P+ P LFQ R +G QNA + +
Sbjct: 112 GFHWAKRNPERVKGIACMEFIRPIPTWDEWPEFARELFQAFRTADVGRELIIDQNAFIEQ 171
Query: 121 ---RFI----------EAGSPYVLKLDKADVYR----LPYLASSGPGFALLEAARKVNFK 163
+F+ P++ +D+ ++R LP AL+EA +N+
Sbjct: 172 VLPKFVVRPLTEVEMDHYREPFLKPVDREPLWRFPNELPIAGEPANIVALVEA--YMNWL 229
Query: 164 DISSRIGAGFSSGSWDKPVLVAWGISDKYLPQSVAEEFQKGNPNVVKLQMIEGAGHMPQE 223
S P L+ WG +P + A + PN + + G H QE
Sbjct: 230 HQSP------------VPKLLFWGTPGVLIPPAEAARLAESLPNCKTVDIGPGL-HYLQE 276
Query: 224 DWPEKV 229
D P+ +
Sbjct: 277 DNPDLI 282
>pdb|3FBW|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant C176y
Length = 299
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 89/238 (37%), Gaps = 35/238 (14%)
Query: 11 CFAPDWLGFGFSDKPEKGY--DDFDFTENEFHXXXXXXXXXXXXXYPFFLVVQGFLVGSY 68
C APD +G G SDKP+ Y DD H LV+ + +
Sbjct: 61 CIAPDLIGMGKSDKPDLDYFFDD--------HVRYLDAFIEALGLEEVVLVIHDW-GSAL 111
Query: 69 GLTWALKNPSRISKLAILN--SPLTASSPLPGL----FQQLRIPLLGE--FTAQNAIMAE 120
G WA +NP R+ +A + P+ P FQ R +G QNA
Sbjct: 112 GFHWAKRNPERVKGIACMEFIRPIPTWDEWPEFARETFQAFRTADVGRELIIDQNA---- 167
Query: 121 RFIEAGSP-YVLK---LDKADVYRLPYLASSGPGFALLEAARKVNFKDISSRIGAGFSS- 175
FIE P YV++ + D YR P+L L ++ + I A +
Sbjct: 168 -FIEGALPKYVVRPLTEVEMDHYREPFLKPVD-REPLWRFPNELPIAGEPANIVALVEAY 225
Query: 176 GSW----DKPVLVAWGISDKYLPQSVAEEFQKGNPNVVKLQMIEGAGHMPQEDWPEKV 229
+W P L+ WG +P + A + PN + + G H QED P+ +
Sbjct: 226 MNWLHQSPVPKLLFWGTPGVLIPPAEAARLAESLPNCKTVDIGPGL-HYLQEDNPDLI 282
>pdb|1BN6|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
pdb|1BN7|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
Length = 294
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 86/238 (36%), Gaps = 35/238 (14%)
Query: 11 CFAPDWLGFGFSDKPEKGY--DDFDFTENEFHXXXXXXXXXXXXXYPFFLVVQGFLVGSY 68
C APD +G G SDKP+ Y DD H LV+ + +
Sbjct: 61 CIAPDLIGMGKSDKPDLDYFFDD--------HVRYLDAFIEALGLEEVVLVIHDW-GSAL 111
Query: 69 GLTWALKNPSRISKLAILN--SPLTASSPLPGL----FQQLRIPLLGE--FTAQNAIMAE 120
G WA +NP R+ +A + P+ P FQ R +G QNA
Sbjct: 112 GFHWAKRNPERVKGIACMEFIRPIPTWDEWPEFARETFQAFRTADVGRELIIDQNA---- 167
Query: 121 RFIEAGSPYV----LKLDKADVYRLPYLASSGPGFALLEAARKVNFKDISSRIGAGFSS- 175
FIE P L + D YR P+L L ++ + I A +
Sbjct: 168 -FIEGVLPKCVVRPLTEVEMDHYREPFLKPVD-REPLWRFPNEIPIAGEPANIVALVEAY 225
Query: 176 GSW----DKPVLVAWGISDKYLPQSVAEEFQKGNPNVVKLQMIEGAGHMPQEDWPEKV 229
+W P L+ WG +P + A + PN + + G H QED P+ +
Sbjct: 226 MNWLHQSPVPKLLFWGTPGVLIPPAEAARLAESLPNCKTVDIGPGL-HYLQEDNPDLI 282
>pdb|3FWH|A Chain A, Structure Of Haloalkane Dehalogenase Mutant Dha15
(I135fC176Y) FROM Rhodococcus Rhodochrous
Length = 299
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 88/238 (36%), Gaps = 35/238 (14%)
Query: 11 CFAPDWLGFGFSDKPEKGY--DDFDFTENEFHXXXXXXXXXXXXXYPFFLVVQGFLVGSY 68
C APD +G G SDKP+ Y DD H LV+ + +
Sbjct: 61 CIAPDLIGMGKSDKPDLDYFFDD--------HVRYLDAFIEALGLEEVVLVIHDW-GSAL 111
Query: 69 GLTWALKNPSRISKLAILN--SPLTASSPLPGL----FQQLRIPLLGE--FTAQNAIMAE 120
G WA +NP R+ +A + P P FQ R +G QNA
Sbjct: 112 GFHWAKRNPERVKGIACMEFIRPFPTWDEWPEFARETFQAFRTADVGRELIIDQNA---- 167
Query: 121 RFIEAGSP-YVLK---LDKADVYRLPYLASSGPGFALLEAARKVNFKDISSRIGAGFSS- 175
FIE P YV++ + D YR P+L L ++ + I A +
Sbjct: 168 -FIEGALPKYVVRPLTEVEMDHYREPFLKPVD-REPLWRFPNELPIAGEPANIVALVEAY 225
Query: 176 GSW----DKPVLVAWGISDKYLPQSVAEEFQKGNPNVVKLQMIEGAGHMPQEDWPEKV 229
+W P L+ WG +P + A + PN + + G H QED P+ +
Sbjct: 226 MNWLHQSPVPKLLFWGTPGVLIPPAEAARLAESLPNCKTVDIGPGL-HYLQEDNPDLI 282
>pdb|1CQW|A Chain A, Nai Cocrystallised With Haloalkane Dehalogenase From A
Rhodococcus Species
Length = 295
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 86/238 (36%), Gaps = 35/238 (14%)
Query: 11 CFAPDWLGFGFSDKPEKGY--DDFDFTENEFHXXXXXXXXXXXXXYPFFLVVQGFLVGSY 68
C APD +G G SDKP+ Y DD H LV+ + +
Sbjct: 58 CIAPDLIGMGKSDKPDLDYFFDD--------HVRYLDAFIEALGLEEVVLVIHDW-GSAL 108
Query: 69 GLTWALKNPSRISKLAILN--SPLTASSPLPGL----FQQLRIPLLGE--FTAQNAIMAE 120
G WA +NP R+ +A + P+ P FQ R +G QNA
Sbjct: 109 GFHWAKRNPERVKGIACMEFIRPIPTWDEWPEFARETFQAFRTADVGRELIIDQNA---- 164
Query: 121 RFIEAGSPYV----LKLDKADVYRLPYLASSGPGFALLEAARKVNFKDISSRIGAGFSS- 175
FIE P L + D YR P+L L ++ + I A +
Sbjct: 165 -FIEGVLPKCVVRPLTEVEMDHYREPFLKPVD-REPLWRFPNEIPIAGEPANIVALVEAY 222
Query: 176 GSW----DKPVLVAWGISDKYLPQSVAEEFQKGNPNVVKLQMIEGAGHMPQEDWPEKV 229
+W P L+ WG +P + A + PN + + G H QED P+ +
Sbjct: 223 MNWLHQSPVPKLLFWGTPGVLIPPAEAARLAESLPNCKTVDIGPGL-HYLQEDNPDLI 279
>pdb|3RK4|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31
pdb|3RLT|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 299
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 88/238 (36%), Gaps = 35/238 (14%)
Query: 11 CFAPDWLGFGFSDKPEKGY--DDFDFTENEFHXXXXXXXXXXXXXYPFFLVVQGFLVGSY 68
C APD +G G SDKP+ Y DD H LV+ + +
Sbjct: 61 CIAPDLIGMGKSDKPDLDYFFDD--------HVRYLDAFIEALGLEEVVLVIHDW-GSAL 111
Query: 69 GLTWALKNPSRISKLAILN--SPLTASSPLPGL----FQQLRIPLLGE--FTAQNAIMAE 120
G WA +NP R+ +A + P P FQ R +G QNA
Sbjct: 112 GFHWAKRNPERVKGIACMEFIRPFPTWDEWPEFARETFQAFRTADVGRELIIDQNA---- 167
Query: 121 RFIEAGSP-YVLK---LDKADVYRLPYLASSGPGFALLEAARKVNFKDISSRIGAGFSS- 175
FIE P YV++ + D YR P+L L ++ + I A +
Sbjct: 168 -FIEGALPKYVVRPLTEVEMDHYREPFLKPVD-REPLWRFPNELPIAGEPANIVALVEAY 225
Query: 176 GSW----DKPVLVAWGISDKYLPQSVAEEFQKGNPNVVKLQMIEGAGHMPQEDWPEKV 229
+W P L+ WG +P + A + PN + + G H QED P+ +
Sbjct: 226 MNWLHQSPVPKLLFWGTPGFIIPPAEAARLAESLPNCKTVDIGPGL-HFLQEDNPDLI 282
>pdb|4FWB|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 292
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 88/238 (36%), Gaps = 35/238 (14%)
Query: 11 CFAPDWLGFGFSDKPEKGY--DDFDFTENEFHXXXXXXXXXXXXXYPFFLVVQGFLVGSY 68
C APD +G G SDKP+ Y DD H LV+ + +
Sbjct: 58 CIAPDLIGMGKSDKPDLDYFFDD--------HVRYLDAFIEALGLEEVVLVIHDW-GSAL 108
Query: 69 GLTWALKNPSRISKLAILN--SPLTASSPLPGL----FQQLRIPLLGE--FTAQNAIMAE 120
G WA +NP R+ +A + P P FQ R +G QNA
Sbjct: 109 GFHWAKRNPERVKGIACMEFIRPFPTWDEWPEFARETFQAFRTADVGRELIIDQNA---- 164
Query: 121 RFIEAGSP-YVLK---LDKADVYRLPYLASSGPGFALLEAARKVNFKDISSRIGAGFSS- 175
FIE P YV++ + D YR P+L L ++ + I A +
Sbjct: 165 -FIEGALPKYVVRPLTEVEMDHYREPFLKPVD-REPLWRFPNELPIAGEPANIVALVEAY 222
Query: 176 GSW----DKPVLVAWGISDKYLPQSVAEEFQKGNPNVVKLQMIEGAGHMPQEDWPEKV 229
+W P L+ WG +P + A + PN + + G H QED P+ +
Sbjct: 223 MNWLHQSPVPKLLFWGTPGFIIPPAEAARLAESLPNCKTVDIGPGL-HFLQEDNPDLI 279
>pdb|3G9X|A Chain A, Structure Of Haloalkane Dehalogenase Dhaa14 Mutant I135f
From Rhodococcus Rhodochrous
Length = 299
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 85/238 (35%), Gaps = 35/238 (14%)
Query: 11 CFAPDWLGFGFSDKPEKGY--DDFDFTENEFHXXXXXXXXXXXXXYPFFLVVQGFLVGSY 68
C APD +G G SDKP+ Y DD H LV+ + +
Sbjct: 61 CIAPDLIGMGKSDKPDLDYFFDD--------HVRYLDAFIEALGLEEVVLVIHDW-GSAL 111
Query: 69 GLTWALKNPSRISKLAILN--SPLTASSPLPGL----FQQLRIPLLGE--FTAQNAIMAE 120
G WA +NP R+ +A + P P FQ R +G QNA
Sbjct: 112 GFHWAKRNPERVKGIACMEFIRPFPTWDEWPEFARETFQAFRTADVGRELIIDQNA---- 167
Query: 121 RFIEAGSPYV----LKLDKADVYRLPYLASSGPGFALLEAARKVNFKDISSRIGAGFSS- 175
FIE P L + D YR P+L L ++ + I A +
Sbjct: 168 -FIEGALPKCVVRPLTEVEMDHYREPFLKPVD-REPLWRFPNELPIAGEPANIVALVEAY 225
Query: 176 GSW----DKPVLVAWGISDKYLPQSVAEEFQKGNPNVVKLQMIEGAGHMPQEDWPEKV 229
+W P L+ WG +P + A + PN + + G H QED P+ +
Sbjct: 226 MNWLHQSPVPKLLFWGTPGVLIPPAEAARLAESLPNCKTVDIGPGL-HYLQEDNPDLI 282
>pdb|4F5Z|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (l95v, A172v)
Length = 299
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 86/238 (36%), Gaps = 35/238 (14%)
Query: 11 CFAPDWLGFGFSDKPEKGY--DDFDFTENEFHXXXXXXXXXXXXXYPFFLVVQGFLVGSY 68
C APD +G G SDKP+ Y DD H LV+ + +
Sbjct: 61 CIAPDLIGMGKSDKPDLDYFFDD--------HVRYLDAFIEAVGLEEVVLVIHDW-GSAL 111
Query: 69 GLTWALKNPSRISKLAILN--SPLTASSPLPGL----FQQLRIPLLGE--FTAQNAIMAE 120
G WA +NP R+ +A + P+ P FQ R +G QNA
Sbjct: 112 GFHWAKRNPERVKGIACMEFIRPIPTWDEWPEFARETFQAFRTADVGRELIIDQNA---- 167
Query: 121 RFIEAGSPYV----LKLDKADVYRLPYLASSGPGFALLEAARKVNFKDISSRIGAGFSS- 175
FIE P L + D YR P+L L ++ + I A +
Sbjct: 168 -FIEGVLPKCVVRPLTEVEMDHYREPFLKPVD-REPLWRFPNELPIAGEPANIVALVEAY 225
Query: 176 GSW----DKPVLVAWGISDKYLPQSVAEEFQKGNPNVVKLQMIEGAGHMPQEDWPEKV 229
+W P L+ WG +P + A + PN + + G H QED P+ +
Sbjct: 226 MNWLHQSPVPKLLFWGTPGVLIPPAEAARLAESLPNCKTVDIGPGL-HYLQEDNPDLI 282
>pdb|2V9Z|A Chain A, Structure Of The Rhodococcus Haloalkane Dehalogenase
Mutant With Enhanced Enantioselectivity
Length = 304
Score = 35.0 bits (79), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 58/245 (23%), Positives = 87/245 (35%), Gaps = 38/245 (15%)
Query: 11 CFAPDWLGFGFSDKPEKGY--DDFDFTENEFHXXXXXXXXXXXXXYPFFLVVQGFLVGSY 68
C APD +G G SDKP+ Y DD H LV+ + +
Sbjct: 61 CIAPDLIGMGKSDKPDLDYFFDD--------HVRYLDAFIEALGLEEVVLVIHDW-GSAL 111
Query: 69 GLTWALKNPSRISKLAILN--SPLTA---------------SSPLPGLFQQLRIPLLGE- 110
G WA +NP R+ +A + P+ + FQ R +G
Sbjct: 112 GFHWAKRNPERVKGIACMEFIRPIPTWDEFHHTEVAEEQDHAEAARETFQAFRTADVGRE 171
Query: 111 -FTAQNAIMAERFIEAGSPYVLKLDKADVYRLPYLASSGPGFALLEAARKVNFKDISSRI 169
QNA + ER + G L + D YR P+L L ++ + I
Sbjct: 172 LIIDQNAFI-ERVLPGGVVRPLTEVEMDHYREPFLKPVD-REPLWRFPNELPIAGEPANI 229
Query: 170 GAGFSS-GSW----DKPVLVAWGISDKYLPQSVAEEFQKGNPNVVKLQMIEGAGHMPQED 224
A + +W P L+ WG +P + A + PN + + G H QED
Sbjct: 230 VALVEAYMNWLHQSPVPKLLFWGTPGALIPPAEAARLAESLPNCKTVDIGPGL-HYLQED 288
Query: 225 WPEKV 229
P+ +
Sbjct: 289 NPDLI 293
>pdb|3SK0|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant Dhaa12
Length = 311
Score = 35.0 bits (79), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 58/245 (23%), Positives = 87/245 (35%), Gaps = 38/245 (15%)
Query: 11 CFAPDWLGFGFSDKPEKGY--DDFDFTENEFHXXXXXXXXXXXXXYPFFLVVQGFLVGSY 68
C APD +G G SDKP+ Y DD H LV+ + +
Sbjct: 61 CIAPDLIGMGKSDKPDLDYFFDD--------HVRYLDAFIEALGLEEVVLVIHDW-GSAL 111
Query: 69 GLTWALKNPSRISKLAILN--SPLTA---------------SSPLPGLFQQLRIPLLGE- 110
G WA +NP R+ +A + P+ + FQ R +G
Sbjct: 112 GFHWAKRNPERVKGIACMEFIRPIPTWDEFHHTEVAEEQDHAEAARETFQAFRTADVGRE 171
Query: 111 -FTAQNAIMAERFIEAGSPYVLKLDKADVYRLPYLASSGPGFALLEAARKVNFKDISSRI 169
QNA + ER + G L + D YR P+L L ++ + I
Sbjct: 172 LIIDQNAFI-ERVLPGGVVRPLTEVEMDHYREPFLKPVD-REPLWRFPNELPIAGEPANI 229
Query: 170 GAGFSS-GSW----DKPVLVAWGISDKYLPQSVAEEFQKGNPNVVKLQMIEGAGHMPQED 224
A + +W P L+ WG +P + A + PN + + G H QED
Sbjct: 230 VALVEAYMNWLHQSPVPKLLFWGTPGALIPPAEAARLAESLPNCKTVDIGPGL-HYLQED 288
Query: 225 WPEKV 229
P+ +
Sbjct: 289 NPDLI 293
>pdb|3A2L|A Chain A, Crystal Structure Of Dbja (Mutant Dbja Delta)
pdb|3A2L|B Chain B, Crystal Structure Of Dbja (Mutant Dbja Delta)
Length = 309
Score = 34.7 bits (78), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 10 HCFAPDWLGFGFSDKPEKGYDDFDFTE 36
HC APD +GFG S KP+ Y FD
Sbjct: 57 HCIAPDLIGFGQSGKPDIAYRFFDHVR 83
>pdb|3AFI|E Chain E, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|A Chain A, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|B Chain B, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|F Chain F, Crystal Structure Of Dbja (His-Dbja)
Length = 316
Score = 34.7 bits (78), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 10 HCFAPDWLGFGFSDKPEKGYDDFD 33
HC APD +GFG S KP+ Y FD
Sbjct: 57 HCIAPDLIGFGQSGKPDIAYRFFD 80
>pdb|3A2M|A Chain A, Crystal Structure Of Dbja (Wild Type Type I)
pdb|3A2M|B Chain B, Crystal Structure Of Dbja (Wild Type Type I)
pdb|3A2N|A Chain A, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|B Chain B, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|E Chain E, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|F Chain F, Crystal Structure Of Dbja (Wild Type Type Ii P21)
Length = 312
Score = 34.7 bits (78), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 10 HCFAPDWLGFGFSDKPEKGYDDFD 33
HC APD +GFG S KP+ Y FD
Sbjct: 57 HCIAPDLIGFGQSGKPDIAYRFFD 80
>pdb|3KXP|A Chain A, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|B Chain B, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|C Chain C, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|D Chain D, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|E Chain E, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|F Chain F, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|G Chain G, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|H Chain H, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|I Chain I, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|J Chain J, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|K Chain K, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|L Chain L, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
Length = 314
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 3 QMSDAGFHCFAPDWLGFGFSDKPEKGYDDFDFTEN 37
++SD F A D G G SDKPE GY+ D+ ++
Sbjct: 90 RLSDR-FTTIAVDQRGHGLSDKPETGYEANDYADD 123
>pdb|1EHY|A Chain A, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|B Chain B, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|C Chain C, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|D Chain D, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
Length = 294
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 28/59 (47%)
Query: 179 DKPVLVAWGISDKYLPQSVAEEFQKGNPNVVKLQMIEGAGHMPQEDWPEKVVDGLRYFF 237
D PV + WG+ D +P + EF + ++ IE GH + PE +D ++ F
Sbjct: 235 DLPVTMIWGLGDTCVPYAPLIEFVPKYYSNYTMETIEDCGHFLMVEKPEIAIDRIKTAF 293
>pdb|1IMJ|A Chain A, Crystal Structure Of The Human Ccg1/tafii250-interacting
Factor B (cib)
Length = 210
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 50/120 (41%), Gaps = 18/120 (15%)
Query: 123 IEAGSPYVLKLDKADVYRLPYLASSG---PGFALLE--AARKVNFKDISSRIGAGFSSGS 177
+E G P V+ + +Y LP+L + G PGF + K+N + + S
Sbjct: 100 LELGPPVVISPSLSGMYSLPFLTAPGSQLPGFVPVAPICTDKINAANYA----------S 149
Query: 178 WDKPVLVAWGISDKYLPQSVAEEFQKGNPNVVKLQMIEGAGHMPQEDWPEKVVDGLRYFF 237
P L+ +G D S Q N V+ +++GAGH D PE+ GL F
Sbjct: 150 VKTPALIVYGDQDPMGQTSFEHLKQLPNHRVL---IMKGAGHPCYLDKPEEWHTGLLDFL 206
>pdb|2VOS|A Chain A, Mycobacterium Tuberculosis Folylpolyglutamate Synthase
Complexed With Adp
Length = 487
Score = 31.2 bits (69), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 96 LPGLFQQLRIPLLGEFTAQNAIMAERFIEA--GSPYVLKLDKADVYRLPYLASSGPG 150
L G++ + +PL GE A NA++A +EA G+ +LD D R + A + PG
Sbjct: 282 LGGVYSDIYLPLHGEHQAHNAVLALASVEAFFGAGAQRQLD-GDAVRAGFAAVTSPG 337
>pdb|2VOR|A Chain A, Crystal Structures Of Mycobacterium Tuberculosis
Folylpolyglutamate Synthase Complexed With Adp And
Amppcp
Length = 487
Score = 31.2 bits (69), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 96 LPGLFQQLRIPLLGEFTAQNAIMAERFIEA--GSPYVLKLDKADVYRLPYLASSGPG 150
L G++ + +PL GE A NA++A +EA G+ +LD D R + A + PG
Sbjct: 282 LGGVYSDIYLPLHGEHQAHNAVLALASVEAFFGAGAQRQLD-GDAVRAGFAAVTSPG 337
>pdb|2D0D|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) A129v Mutant
Length = 282
Score = 30.8 bits (68), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 9 FHCFAPDWLGFGFSDKPEK 27
+ APD +GFGF+D+PE
Sbjct: 55 YRVIAPDMVGFGFTDRPEN 73
>pdb|1IUN|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUN|B Chain B, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUO|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Acetates
pdb|1IUP|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Isobutyrates
pdb|1UK6|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Propionate
pdb|1UK7|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With N-Butyrate
pdb|1UK8|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With N-valerate
pdb|1UK9|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Isovalerate
pdb|1UKA|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With (S)-2-Methylbutyrate
pdb|1UKB|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With Benzoate
Length = 282
Score = 30.8 bits (68), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 9 FHCFAPDWLGFGFSDKPEK 27
+ APD +GFGF+D+PE
Sbjct: 55 YRVIAPDMVGFGFTDRPEN 73
>pdb|3N9I|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Yersinia Pestis Co92
pdb|3N9I|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Yersinia Pestis Co92
Length = 346
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 155 EAARKVNFKDISSRIGAGFSSGSWDKPVLVAWGI 188
E +R FKD S+R ++G +D PVL+A I
Sbjct: 115 ELSRMTQFKDKSARYAENINAGLFDYPVLMAADI 148
>pdb|3U1T|A Chain A, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
pdb|3U1T|B Chain B, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
Length = 309
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 93/248 (37%), Gaps = 34/248 (13%)
Query: 7 AGFHCFAPDWLGFGFSDKPEKGYDDFDFTENEFHXXXXXXXXXXXXXYPFFLVVQGFLVG 66
AG+ APD +G G S KP+ Y D H LV+ + G
Sbjct: 55 AGYRAVAPDLIGXGDSAKPDIEYRLQD------HVAYXDGFIDALGLDDXVLVIHDW--G 106
Query: 67 SY-GLTWALKNPSRISKLAILNSPLTASSPLPG----------LFQQLRIPLLGEFTAQN 115
S G A NP R++ +A + + + P P LF+ LR +GE +
Sbjct: 107 SVIGXRHARLNPDRVAAVAFXEALVPPALPXPSYEAXGPQLGPLFRDLRTADVGE---KX 163
Query: 116 AIMAERFIEAGSP---YVLKLDKAD--VYRLPYLASSGPGFALLEAARKVNFKDISSRIG 170
+ F+E P V L +A+ YR P+ L+ R+V +
Sbjct: 164 VLDGNFFVETILPEXGVVRSLSEAEXAAYRAPFPTRQS-RLPTLQWPREVPIGGEPAFAE 222
Query: 171 AG-FSSGSW----DKPVLVAWGISDKYLPQSVAEEFQKGNPNVVKLQMIEGAGHMPQEDW 225
A +G W P L+ P+ V + + PN ++++ + H QED
Sbjct: 223 AEVLKNGEWLXASPIPKLLFHAEPGALAPKPVVDYLSENVPN-LEVRFVGAGTHFLQEDH 281
Query: 226 PEKVVDGL 233
P + G+
Sbjct: 282 PHLIGQGI 289
>pdb|1K4R|A Chain A, Structure Of Dengue Virus
pdb|1K4R|B Chain B, Structure Of Dengue Virus
pdb|1K4R|C Chain C, Structure Of Dengue Virus
pdb|1N6G|A Chain A, The Structure Of Immature Dengue-2 Prm Particles
pdb|1N6G|B Chain B, The Structure Of Immature Dengue-2 Prm Particles
pdb|1N6G|C Chain C, The Structure Of Immature Dengue-2 Prm Particles
pdb|1NA4|A Chain A, The Structure Of Immature Yellow Fever Virus Particle
pdb|1NA4|B Chain B, The Structure Of Immature Yellow Fever Virus Particle
pdb|1NA4|C Chain C, The Structure Of Immature Yellow Fever Virus Particle
pdb|1SVB|A Chain A, Envelope Glycoprotein From Tick-Borne Encephalitis Virus
Length = 395
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 100 FQQLRIPLLGEFTAQNAIMAERFIEAGSPYVLKLDKADVYRL 141
F L +P E AQN AER +E G+P+ +K+ DVY L
Sbjct: 220 FNDLALPWKHEG-AQNWNNAERLVEFGAPHAVKM---DVYNL 257
>pdb|1URZ|A Chain A, Low Ph Induced, Membrane Fusion Conformation Of The
Envelope Protein Of Tick-Borne Encephalitis Virus
pdb|1URZ|B Chain B, Low Ph Induced, Membrane Fusion Conformation Of The
Envelope Protein Of Tick-Borne Encephalitis Virus
pdb|1URZ|C Chain C, Low Ph Induced, Membrane Fusion Conformation Of The
Envelope Protein Of Tick-Borne Encephalitis Virus
pdb|1URZ|D Chain D, Low Ph Induced, Membrane Fusion Conformation Of The
Envelope Protein Of Tick-Borne Encephalitis Virus
pdb|1URZ|E Chain E, Low Ph Induced, Membrane Fusion Conformation Of The
Envelope Protein Of Tick-Borne Encephalitis Virus
pdb|1URZ|F Chain F, Low Ph Induced, Membrane Fusion Conformation Of The
Envelope Protein Of Tick-Borne Encephalitis Virus
Length = 401
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 100 FQQLRIPLLGEFTAQNAIMAERFIEAGSPYVLKLDKADVYRL 141
F L +P E AQN AER +E G+P+ +K+ DVY L
Sbjct: 220 FNDLALPWKHEG-AQNWNNAERLVEFGAPHAVKM---DVYNL 257
>pdb|3VDX|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|D Chain D, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|E Chain E, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|F Chain F, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|G Chain G, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|H Chain H, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|I Chain I, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|J Chain J, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|K Chain K, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|L Chain L, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
Length = 456
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 6 DAGFHCFAPDWLGFGFSDKPEKGYD 30
DAG+ D GFG S +P GYD
Sbjct: 49 DAGYRVITYDRRGFGQSSQPTTGYD 73
>pdb|3BDI|A Chain A, Crystal Structure Of Predicted Cib-Like Hydrolase
(Np_393672.1) From Thermoplasma Acidophilum At 1.45 A
Resolution
Length = 207
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 32/54 (59%), Gaps = 7/54 (12%)
Query: 180 KPVLVAWGISDKYLPQSVAEEFQKGNPNVV---KLQMIEGAGHMPQEDWPEKVV 230
+ L+ WG D +P ++++E+ +++ +L+++EG+GH + PE+ V
Sbjct: 148 QKTLLVWGSKDHVVPIALSKEY----ASIISGSRLEIVEGSGHPVYIEKPEEFV 197
>pdb|1BRT|A Chain A, Bromoperoxidase A2 Mutant M99t
Length = 277
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 2 SQMSDAGFHCFAPDWLGFGFSDKPEKGYD 30
+ + DAG+ D GFG S +P GYD
Sbjct: 44 AALLDAGYRVITYDRRGFGQSSQPTTGYD 72
>pdb|1BRO|A Chain A, Bromoperoxidase A2
pdb|1BRO|B Chain B, Bromoperoxidase A2
Length = 277
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 2 SQMSDAGFHCFAPDWLGFGFSDKPEKGYD 30
+ + DAG+ D GFG S +P GYD
Sbjct: 44 AALLDAGYRVITYDRRGFGQSSQPTTGYD 72
>pdb|1A7U|A Chain A, Chloroperoxidase T
pdb|1A7U|B Chain B, Chloroperoxidase T
pdb|1A8U|A Chain A, Chloroperoxidase TBENZOATE COMPLEX
pdb|1A8U|B Chain B, Chloroperoxidase TBENZOATE COMPLEX
Length = 277
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 2 SQMSDAGFHCFAPDWLGFGFSDKPEKGYD 30
+ + DAG+ D GFG S +P GYD
Sbjct: 44 AALLDAGYRVITYDRRGFGQSSQPTTGYD 72
>pdb|3HBZ|A Chain A, Crystal Structure Of A Putative Glycoside Hydrolase
(Bt_2081) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.05 A Resolution
Length = 342
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 57/152 (37%), Gaps = 21/152 (13%)
Query: 58 LVVQGFLVGSYGLTWALKNPSRISKLAILNSPLTASSPLPGLFQQLRIPLLGEFTAQNAI 117
+ +GS+ + A NP + +K LP F+ + L G + +
Sbjct: 177 IAAGNLFIGSFDVGNAXSNPLKATKFG-----------LP--FRHIPTYLAGYYKYK--- 220
Query: 118 MAERFIEAGSPYVLKLDKADVYRLPYLAS-SGPGFALLEAARKVNFKDISSRIGAGFSSG 176
++F E G P K D D+Y + Y S S P A N I +RI +
Sbjct: 221 AGDQFTEGGKPVSGKRDICDIYAIXYETSESVPTLDGTNAFTSPNLVSI-ARIDDAKETD 279
Query: 177 SWDKPVLVAWGISDKYLPQSVAEEFQKGNPNV 208
W L +S KY+ + E+ G NV
Sbjct: 280 EWTYFKLPFHXLSGKYIDK---EKLTAGKYNV 308
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,413,862
Number of Sequences: 62578
Number of extensions: 292188
Number of successful extensions: 736
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 669
Number of HSP's gapped (non-prelim): 57
length of query: 241
length of database: 14,973,337
effective HSP length: 96
effective length of query: 145
effective length of database: 8,965,849
effective search space: 1300048105
effective search space used: 1300048105
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)