BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026229
(241 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q39635|Y38K_CORSE Uncharacterized 38.1 kDa protein OS=Corydalis sempervirens PE=2
SV=1
Length = 338
Score = 252 bits (643), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 128/213 (60%), Positives = 156/213 (73%), Gaps = 15/213 (7%)
Query: 1 MGNALRFLYGKCCKPLTEEDSGSLGPHGVSAATVGVSALAQDLYHFEITSQVPEGLTRHV 60
MGNALRFLYG CCKP E+ +GVS ATVGVSALA DL+HFE TSQ+PEGLT++V
Sbjct: 1 MGNALRFLYGHCCKPTVEDHYQPPHGYGVSTATVGVSALAHDLFHFENTSQIPEGLTKYV 60
Query: 61 TSSKKAQANWYRKLSEAWREAKPPPTTAEEAARLVIQTLSRHKKADVEGLLAFYGLPL-- 118
SSKKAQ NWY+KLS+AWREAKPPP TAE+A RL+I TL RH+KADV+GLL FYGLPL
Sbjct: 61 VSSKKAQTNWYKKLSQAWREAKPPPQTAEQATRLIILTLKRHQKADVKGLLRFYGLPLSN 120
Query: 119 -PHTLIPVSTAEPT----------TLPAGVDARAIPDGDTITVYVSAADPRESACVPGDV 167
P T A P TLP VD +A+ DGDT+TVYV+ DPRE++ +P V
Sbjct: 121 NPSTEATTVVAPPQADQGVKFELHTLP--VDVKAVADGDTVTVYVNTEDPREASNLPKSV 178
Query: 168 QMAAVRRSKARAERNYEQADALHQKIINAGYRL 200
++AA R+KARA R+Y +ADAL + I++AGYR+
Sbjct: 179 KVAAQERAKARAVRDYVKADALQKNIVDAGYRV 211
>sp|Q9Z6X4|SYC_CHLPN Cysteine--tRNA ligase OS=Chlamydia pneumoniae GN=cysS PE=3 SV=1
Length = 474
Score = 34.7 bits (78), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 160 SACVPGDVQMAAVRRSKARAERNYEQADALHQKIINAGY 198
S C+P V R +AR +N+ AD L +I+ AG+
Sbjct: 422 SVCIPETVMQLVAEREEARKTKNWAMADTLRDEILAAGF 460
>sp|Q821U7|SYC_CHLCV Cysteine--tRNA ligase OS=Chlamydophila caviae (strain GPIC) GN=cysS
PE=3 SV=1
Length = 476
Score = 33.9 bits (76), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 163 VPGDVQMAAVRRSKARAERNYEQADALHQKIINAGYRL 200
+P V+ R AR+E+N++QADAL ++ + GY +
Sbjct: 427 IPDHVKQLVEEREVARSEKNWKQADALRDQVASLGYSI 464
>sp|Q6MBU0|SYC_PARUW Cysteine--tRNA ligase OS=Protochlamydia amoebophila (strain UWE25)
GN=cysS PE=3 SV=1
Length = 478
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 146 DTITVYVSAADPRESACVPGDVQMAAVRRSKARAERNYEQADALHQKIINAGYRL 200
DTI + V D RE + +P D+Q A +R +AR E+N+ +D L I GY +
Sbjct: 414 DTI-LGVLTFDKREES-IPVDLQEAFAKRQQARQEKNWTLSDELRDFIHQRGYLI 466
>sp|Q63505|TF3C1_RAT General transcription factor 3C polypeptide 1 OS=Rattus norvegicus
GN=Gtf3c1 PE=1 SV=1
Length = 2148
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 19 EDSGSLGPHGVSAATVGVSALAQDLYHFEI--TSQVPEGLTRHVTSSKKAQANW 70
ED+G+ GP S +VGVS L Q F++ S+ P GL T S AQ W
Sbjct: 1912 EDAGAEGPRQESQESVGVSGLEQLGCEFQLPENSEDPRGL----TESNMAQVAW 1961
>sp|Q9PLE0|SYC_CHLMU Cysteine--tRNA ligase OS=Chlamydia muridarum (strain MoPn / Nigg)
GN=cysS PE=3 SV=1
Length = 475
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 157 PRESACVPGDVQMAAVRRSKARAERNYEQADALHQKIINAGY 198
P A +P DV + R AR +N+++AD L +II+ G+
Sbjct: 420 PFSQADIPEDVLLLVKEREAARKVKNWKEADRLRDEIISRGF 461
>sp|Q7NMB5|SYC_GLOVI Cysteine--tRNA ligase OS=Gloeobacter violaceus (strain PCC 7421)
GN=cysS PE=3 SV=1
Length = 482
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 152 VSAADP--RESACVPGDVQMAAVRRSKARAERNYEQADALHQKIINAGYRLAIH 203
+ AA+P R+SA +++ R +AR ERN+ +AD + +++++ G L H
Sbjct: 417 LKAAEPEARQSALPEAEIEAQIALRRQAREERNWAEADRIRKQLLDQGIVLIDH 470
>sp|Q04DQ8|SYC_OENOB Cysteine--tRNA ligase OS=Oenococcus oeni (strain ATCC BAA-331 /
PSU-1) GN=cysS PE=3 SV=1
Length = 467
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 25/40 (62%)
Query: 162 CVPGDVQMAAVRRSKARAERNYEQADALHQKIINAGYRLA 201
+P +++ +R AR +N++Q+D L +I + GY+++
Sbjct: 417 SLPKKIELLLKKRETARINKNWQQSDQLRDEIFSLGYKVS 456
>sp|Q255U1|SYC_CHLFF Cysteine--tRNA ligase OS=Chlamydophila felis (strain Fe/C-56)
GN=cysS PE=3 SV=1
Length = 476
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 163 VPGDVQMAAVRRSKARAERNYEQADALHQKIINAGYRL 200
+P +V +R AR E+N+ QADA ++ + GY +
Sbjct: 427 IPDEVMQLVEKREVARREKNWAQADAFRDQVASLGYLI 464
>sp|Q5L546|SYC_CHLAB Cysteine--tRNA ligase OS=Chlamydophila abortus (strain S26/3)
GN=cysS PE=3 SV=1
Length = 476
Score = 32.0 bits (71), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 163 VPGDVQMAAVRRSKARAERNYEQADALHQKIINAGY 198
+P +V R AR E+N++QAD L +I + GY
Sbjct: 427 IPSEVARLVEEREIARKEKNWKQADVLRNQIASFGY 462
>sp|Q21FY4|BIOF_SACD2 8-amino-7-oxononanoate synthase OS=Saccharophagus degradans (strain
2-40 / ATCC 43961 / DSM 17024) GN=bioF PE=3 SV=1
Length = 397
Score = 31.6 bits (70), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 69 NWYRKLSE--AWREAKPPPTTAEEAARLVIQTLSRHKKADVEGLL 111
N +K++E W A PPT E ARL I + H + DVE LL
Sbjct: 336 NVSKKMAERGFWITAIRPPTVPEGTARLRITLSAEHSEQDVEQLL 380
>sp|O29836|SYC_ARCFU Cysteine--tRNA ligase OS=Archaeoglobus fulgidus (strain ATCC 49558
/ VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=cysS
PE=3 SV=1
Length = 467
Score = 31.2 bits (69), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 171 AVRRSKARAERNYEQADALHQKIINAGYRL 200
V R +AR ERN+E ADA+ + G RL
Sbjct: 426 VVERERARKERNFELADAIRDEFAKRGIRL 455
>sp|Q8PVQ1|SYC_METMA Cysteine--tRNA ligase OS=Methanosarcina mazei (strain ATCC BAA-159
/ DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=cysS
PE=3 SV=1
Length = 473
Score = 30.8 bits (68), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 146 DTITVYVSAADPRESACVPGDVQMAAVRRSKARAERNYEQADALHQKIINAGY 198
DT+ ++ A VPG+V R +AR ++++ +DA+ +KI + GY
Sbjct: 408 DTLGIFAKAGGEE----VPGEVVRLVEEREEARKIKDWKTSDAIREKIKSLGY 456
>sp|Q0AJJ4|SYC_NITEC Cysteine--tRNA ligase OS=Nitrosomonas eutropha (strain C91) GN=cysS
PE=3 SV=1
Length = 467
Score = 30.8 bits (68), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 166 DVQMAAVRRSKARAERNYEQADALHQKIINAGYRL 200
+++ +R +AR E+N+ QADAL Q++ AG L
Sbjct: 421 EIERMIQQRLQARKEKNFAQADALRQQLAEAGIIL 455
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.128 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,844,235
Number of Sequences: 539616
Number of extensions: 3362384
Number of successful extensions: 8707
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 8687
Number of HSP's gapped (non-prelim): 33
length of query: 241
length of database: 191,569,459
effective HSP length: 114
effective length of query: 127
effective length of database: 130,053,235
effective search space: 16516760845
effective search space used: 16516760845
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)