Query 026229
Match_columns 241
No_of_seqs 35 out of 37
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 08:38:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026229.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026229hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sp1_A Cysteinyl-tRNA syntheta 95.4 0.014 4.8E-07 55.6 5.1 41 163-203 452-492 (501)
2 3tqo_A Cysteinyl-tRNA syntheta 93.5 0.013 4.4E-07 55.0 0.0 39 165-203 415-453 (462)
3 1li5_A Cysrs, cysteinyl-tRNA s 92.4 0.024 8.2E-07 52.3 0.0 39 166-204 415-453 (461)
4 2yru_A Steroid receptor RNA ac 73.6 4.9 0.00017 31.6 4.9 34 162-195 56-89 (118)
5 4e4j_A Arginine deiminase; L-a 65.0 3.3 0.00011 37.7 2.5 33 183-215 387-419 (433)
6 1s9r_A Arginine deiminase; hyd 56.2 3.9 0.00013 37.2 1.5 33 183-215 364-396 (410)
7 3noj_A 4-carboxy-4-hydroxy-2-o 52.5 8.4 0.00029 33.2 2.9 52 142-205 171-234 (238)
8 2a9g_A Arginine deiminase; arg 49.9 5.2 0.00018 36.3 1.2 33 183-215 372-404 (418)
9 4eqp_A Thermonuclease; staphyl 47.6 6.4 0.00022 30.8 1.2 16 137-152 12-27 (143)
10 1h70_A NG, NG-dimethylarginine 45.6 6.2 0.00021 33.0 0.9 29 187-215 220-248 (255)
11 3h3h_A Uncharacterized snoal-l 45.4 15 0.00051 26.2 2.8 32 84-115 3-34 (122)
12 2crl_A Copper chaperone for su 36.7 27 0.00091 24.7 3.0 29 185-213 65-93 (98)
13 3a98_B Engulfment and cell mot 36.5 70 0.0024 26.9 6.0 76 44-130 116-194 (203)
14 2hj1_A Hypothetical protein; s 32.2 14 0.00047 28.1 0.9 21 141-161 73-94 (97)
15 3k4i_A Uncharacterized protein 31.1 25 0.00085 30.3 2.4 48 142-201 172-225 (244)
16 1yg0_A COP associated protein; 30.7 25 0.00086 21.0 1.8 15 187-201 52-66 (66)
17 1bwd_A ADT, protein (inosamine 27.8 23 0.00078 31.2 1.6 29 187-215 302-330 (348)
18 1q8l_A Copper-transporting ATP 27.7 48 0.0016 21.7 2.9 23 186-208 60-82 (84)
19 3fry_A Probable copper-exporti 27.3 54 0.0019 21.1 3.1 20 185-204 50-69 (73)
20 2fi0_A Conserved domain protei 26.6 43 0.0015 23.9 2.7 24 177-201 55-78 (81)
21 3jx9_A Putative phosphoheptose 25.3 61 0.0021 26.5 3.7 61 87-153 23-86 (170)
22 3dxs_X Copper-transporting ATP 24.8 39 0.0013 21.5 2.0 19 185-203 52-70 (74)
23 1zl0_A Hypothetical protein PA 24.1 93 0.0032 27.5 4.9 61 137-203 9-86 (311)
24 1jdw_A L-arginine\:glycine ami 23.9 27 0.00093 32.1 1.4 29 187-215 377-405 (423)
25 3iwl_A Copper transport protei 23.7 41 0.0014 21.5 1.9 19 185-203 47-65 (68)
26 4azz_A Levanase; hydrolase; 1. 29.2 17 0.00058 27.9 0.0 22 133-154 107-130 (172)
27 3bdl_A Staphylococcal nuclease 23.2 29 0.00098 32.5 1.5 13 140-152 214-226 (570)
28 2gjh_A Designed protein; oblig 22.8 28 0.00094 25.1 1.0 13 139-151 35-47 (62)
29 3a9l_A Poly-gamma-glutamate hy 22.6 74 0.0025 27.6 3.8 37 185-225 122-158 (216)
30 4a4j_A Pacszia, cation-transpo 21.3 57 0.0019 20.3 2.2 16 186-201 52-67 (69)
31 1gxs_B P-(S)-hydroxymandelonit 21.2 37 0.0013 26.6 1.5 22 186-207 55-76 (158)
32 3nzj_F Proteasome component C1 20.7 1.8E+02 0.0061 25.2 5.9 64 84-182 185-250 (288)
33 3oq0_A DBF4, protein DNA52; DD 20.2 2.2E+02 0.0075 23.6 6.0 59 137-210 15-73 (151)
No 1
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=95.44 E-value=0.014 Score=55.57 Aligned_cols=41 Identities=20% Similarity=0.383 Sum_probs=36.1
Q ss_pred CchHHHHHHHHHHHHHHhhChHhHHHHHHHHHHccceeeec
Q 026229 163 VPGDVQMAAVRRSKARAERNYEQADALHQKIINAGYRLAIH 203 (241)
Q Consensus 163 VP~eV~~Aa~~R~~ARa~rdY~~ADaLqk~I~dAGYRvi~~ 203 (241)
++.+|.....+|.+||++|||++||++...|.+.|+.+.+.
T Consensus 452 ~~~~i~~li~~R~~ar~~kd~~~aD~iRd~L~~~Gi~l~D~ 492 (501)
T 3sp1_A 452 IDENMKALIEERRIAKCEKNFKRADEIRDFFAKKGFVLVDT 492 (501)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCC--
T ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHCCcEEEEc
Confidence 56788788888999999999999999999999999998764
No 2
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=93.54 E-value=0.013 Score=55.01 Aligned_cols=39 Identities=18% Similarity=0.418 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHhhChHhHHHHHHHHHHccceeeec
Q 026229 165 GDVQMAAVRRSKARAERNYEQADALHQKIINAGYRLAIH 203 (241)
Q Consensus 165 ~eV~~Aa~~R~~ARa~rdY~~ADaLqk~I~dAGYRvi~~ 203 (241)
.+|.....+|.+||++|||++||++.+.|.+.|+.+.+.
T Consensus 415 ~~i~~li~~R~~ar~~kd~~~aD~iR~~L~~~Gi~l~D~ 453 (462)
T 3tqo_A 415 QEIKKLIDQRNEARAKKDWKTADQIRDQLTDLGVAIEDS 453 (462)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHCCcEEEEc
Confidence 567677777999999999999999999999999998764
No 3
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=92.39 E-value=0.024 Score=52.34 Aligned_cols=39 Identities=21% Similarity=0.314 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhChHhHHHHHHHHHHccceeeecC
Q 026229 166 DVQMAAVRRSKARAERNYEQADALHQKIINAGYRLAIHL 204 (241)
Q Consensus 166 eV~~Aa~~R~~ARa~rdY~~ADaLqk~I~dAGYRvi~~~ 204 (241)
+|.....+|.+||+++||++||+|.+.|.+.|+.+.+..
T Consensus 415 ~~~~l~~~r~~ar~~k~~~~aD~iR~~l~~~gi~~~d~~ 453 (461)
T 1li5_A 415 EIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLEDGP 453 (461)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCEEEEcC
Confidence 465666779999999999999999999999999987653
No 4
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=73.62 E-value=4.9 Score=31.64 Aligned_cols=34 Identities=12% Similarity=0.176 Sum_probs=30.7
Q ss_pred CCchHHHHHHHHHHHHHHhhChHhHHHHHHHHHH
Q 026229 162 CVPGDVQMAAVRRSKARAERNYEQADALHQKIIN 195 (241)
Q Consensus 162 ~VP~eV~~Aa~~R~~ARa~rdY~~ADaLqk~I~d 195 (241)
.|..+|.+...+-.+|...+||++|.++|..|.-
T Consensus 56 ~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 56 KLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp CSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4678898999999999999999999999998864
No 5
>4e4j_A Arginine deiminase; L-arginine, L-citrulline, NH3, hydrolase; 2.30A {Mycoplasma penetrans}
Probab=64.95 E-value=3.3 Score=37.66 Aligned_cols=33 Identities=24% Similarity=0.437 Sum_probs=28.6
Q ss_pred hHhHHHHHHHHHHccceeeecCCcccccccCCC
Q 026229 183 YEQADALHQKIINAGYRLAIHLGDKSSKQRGSS 215 (241)
Q Consensus 183 Y~~ADaLqk~I~dAGYRvi~~~g~~~~~~~~~~ 215 (241)
|+....+++.|.++||.||..-+.|+++.+|+.
T Consensus 387 ~~~n~~t~~~L~~~GieVi~i~~sEl~kggGg~ 419 (433)
T 4e4j_A 387 YERNEKTQKALVEAGIKVLSFNGSQLSLGMGSA 419 (433)
T ss_dssp ETTCHHHHHHHHHTTCEEEEECCTTGGGGSCCT
T ss_pred eCCCHHHHHHHHHCCCEEEEechHHhhcCCCCc
Confidence 455667888999999999999999999999874
No 6
>1s9r_A Arginine deiminase; hydrolase, 5-fold pseudo-symmetric domain, 5- helix bundle domain, raction intermediate; HET: ARG; 1.60A {Mycoplasma arginini} SCOP: d.126.1.4 PDB: 1lxy_A*
Probab=56.18 E-value=3.9 Score=37.24 Aligned_cols=33 Identities=18% Similarity=0.323 Sum_probs=29.0
Q ss_pred hHhHHHHHHHHHHccceeeecCCcccccccCCC
Q 026229 183 YEQADALHQKIINAGYRLAIHLGDKSSKQRGSS 215 (241)
Q Consensus 183 Y~~ADaLqk~I~dAGYRvi~~~g~~~~~~~~~~ 215 (241)
|.....+++.|.++||+||..-+.|+++.+|+.
T Consensus 364 ~~~n~~t~~~L~~~G~~Vi~v~~sEl~kggGg~ 396 (410)
T 1s9r_A 364 YSRNEKTNAALEAAGIKVLPFHGNQLSLGMGNA 396 (410)
T ss_dssp ETTCHHHHHHHHHTTCEEEEECCHHHHTTSCCT
T ss_pred cCCCHHHHHHHHHCCCEEEEechHHHhcCCCCc
Confidence 556677888899999999999999999999974
No 7
>3noj_A 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloac decarboxylase; class II aldolase, A-B-B-A sandwich, metalloprotein, lyase; HET: PG4; 1.82A {Pseudomonas putida}
Probab=52.54 E-value=8.4 Score=33.22 Aligned_cols=52 Identities=19% Similarity=0.257 Sum_probs=31.1
Q ss_pred cCCCCceEEEEecCCCcccCCCchHHHHHHHHHHHHHHhhChHhHH----------H--HHHHHHHccceeeecCC
Q 026229 142 IPDGDTITVYVSAADPRESACVPGDVQMAAVRRSKARAERNYEQAD----------A--LHQKIINAGYRLAIHLG 205 (241)
Q Consensus 142 VaDGDt~TvYVdT~DprEs~~VP~eV~~Aa~~R~~ARa~rdY~~AD----------a--Lqk~I~dAGYRvi~~~g 205 (241)
++|.|||-| +|++.-+.++++++++.+++-...+ . |.+.|.+.|.+.+....
T Consensus 171 ~aD~dGVvv------------iP~~~a~eV~~~a~~~~~~E~~~~~~i~~G~~~~~~~~~~~~l~~~g~~~~~~~~ 234 (238)
T 3noj_A 171 VADDDGVVV------------VRRDECESTLVAAAERAGLEEEKRLRLAAGELGLDIYKMRERLEAKGLRYVDNIE 234 (238)
T ss_dssp EEETTEEEE------------ECGGGHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTCHHHHHHHTCCCCSCGG
T ss_pred EEcCCeEEE------------EcHHHHHHHHHHHHHHHHHHHHHHHHHHCcCChhhccchHHHHHHcCCEeecchh
Confidence 577777755 4555555555555555544433332 2 56678888888877443
No 8
>2a9g_A Arginine deiminase; arginine degradation pathway, catalyti mechanism, hydrolase; HET: ARG; 2.30A {Pseudomonas aeruginosa} SCOP: d.126.1.4 PDB: 1rxx_A 2abr_A* 2aci_A 2aaf_A*
Probab=49.89 E-value=5.2 Score=36.33 Aligned_cols=33 Identities=15% Similarity=0.276 Sum_probs=28.0
Q ss_pred hHhHHHHHHHHHHccceeeecCCcccccccCCC
Q 026229 183 YEQADALHQKIINAGYRLAIHLGDKSSKQRGSS 215 (241)
Q Consensus 183 Y~~ADaLqk~I~dAGYRvi~~~g~~~~~~~~~~ 215 (241)
|.....+++.|.++||+||..-..|+.|++|+-
T Consensus 372 y~~~~~~~~~L~~~G~eVi~v~~sel~kggGg~ 404 (418)
T 2a9g_A 372 YDRNTYTNTLLRKAGVEVITISASELGRGRGGG 404 (418)
T ss_dssp ETTCHHHHHHHHHTTCEEEEECHHHHGGGSCCT
T ss_pred eCCCHHHHHHHHHCCCEEEEechHHHhhcCCCc
Confidence 334457788899999999999999999999985
No 9
>4eqp_A Thermonuclease; staphylococcal nuclease, hyperstable, PDTP, ionizable group, hydrolase; HET: THP; 1.35A {Staphylococcus aureus} PDB: 3ero_A* 2rbm_A* 3d8g_A* 3bdc_A* 4f8m_A* 3lx0_A* 3nqt_A* 3nk9_A* 3pmf_A* 3sr1_A* 3t13_A* 3mxp_A* 3r3o_A* 4df7_A* 3np8_A* 3nxw_A* 3oso_A* 3mz5_A* 3mhb_A* 3dhq_A* ...
Probab=47.56 E-value=6.4 Score=30.80 Aligned_cols=16 Identities=25% Similarity=0.312 Sum_probs=13.2
Q ss_pred CCCCccCCCCceEEEE
Q 026229 137 VDARAIPDGDTITVYV 152 (241)
Q Consensus 137 VdaKaVaDGDt~TvYV 152 (241)
+....|.|||||+|..
T Consensus 12 ~~V~~V~DGDTi~v~~ 27 (143)
T 4eqp_A 12 ATLIKAIDGDTVKLMY 27 (143)
T ss_dssp EEEEEECSSSEEEEEE
T ss_pred EEEEEEECCCEEEEEe
Confidence 4566899999999975
No 10
>1h70_A NG, NG-dimethylarginine dimethylaminohydrolase; DDAH, nitric oxide synthase inhibitor; HET: CIR; 1.8A {Pseudomonas aeruginosa} SCOP: d.126.1.3 PDB: 3rhy_A 3bpb_A*
Probab=45.64 E-value=6.2 Score=32.98 Aligned_cols=29 Identities=24% Similarity=0.256 Sum_probs=25.2
Q ss_pred HHHHHHHHHccceeeecCCcccccccCCC
Q 026229 187 DALHQKIINAGYRLAIHLGDKSSKQRGSS 215 (241)
Q Consensus 187 DaLqk~I~dAGYRvi~~~g~~~~~~~~~~ 215 (241)
..+.+.|.++||++|..-..|+.|+.|+-
T Consensus 220 ~~~~~~l~~~g~~vi~v~~~el~~~gG~~ 248 (255)
T 1h70_A 220 PRTREKIARLGYRVIEVDTSEYRKIDGGV 248 (255)
T ss_dssp HHHHHHHHTTTCEEEEECCHHHHTTTCCT
T ss_pred HHHHHHHHHCCCeEEEechHHHhcCCcCC
Confidence 35677888899999999999999998874
No 11
>3h3h_A Uncharacterized snoal-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE UNL MES; 1.60A {Burkholderia thailandensis E264}
Probab=45.42 E-value=15 Score=26.15 Aligned_cols=32 Identities=19% Similarity=0.342 Sum_probs=25.9
Q ss_pred CCCCHHHHHHHHHHHHhhhccchhhhhhhhhC
Q 026229 84 PPTTAEEAARLVIQTLSRHKKADVEGLLAFYG 115 (241)
Q Consensus 84 pP~T~eeAarLVi~tLk~hqkadvEGLL~FYG 115 (241)
.|-|.+++..||.+-++.-..-|+++|+++|-
T Consensus 3 ~~m~~~~~~~~~~~~~~a~n~~D~~~l~~l~a 34 (122)
T 3h3h_A 3 EPITQAFAQQFSREWIDAWNAHDLDAILSHYA 34 (122)
T ss_dssp -CCCHHHHHHHHHHHHHHHHTTCHHHHHTTEE
T ss_pred CcCCHHHHHHHHHHHHHHHhccCHHHHHHhcC
Confidence 35677888888888888778889999999984
No 12
>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.74 E-value=27 Score=24.73 Aligned_cols=29 Identities=7% Similarity=0.076 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHccceeeecCCcccccccC
Q 026229 185 QADALHQKIINAGYRLAIHLGDKSSKQRG 213 (241)
Q Consensus 185 ~ADaLqk~I~dAGYRvi~~~g~~~~~~~~ 213 (241)
..+.|.+.|.++||.+..........+.+
T Consensus 65 ~~~~i~~~i~~~Gy~~~~~~~~~~~~~~~ 93 (98)
T 2crl_A 65 PSQEVQALLEGTGRQAVLKGMGSGQLQNS 93 (98)
T ss_dssp CHHHHHHHHHTTTSCEEEEESCCCCCCCC
T ss_pred CHHHHHHHHHHhCCceEEccCCCCccCcC
Confidence 34678899999999976654444444433
No 13
>3a98_B Engulfment and cell motility protein 1; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens} PDB: 2vsz_A
Probab=36.47 E-value=70 Score=26.88 Aligned_cols=76 Identities=16% Similarity=0.219 Sum_probs=47.7
Q ss_pred ccccccccCCcccccccccchHHHHHH---HHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhhccchhhhhhhhhCCCCCC
Q 026229 44 YHFEITSQVPEGLTRHVTSSKKAQANW---YRKLSEAWREAKPPPTTAEEAARLVIQTLSRHKKADVEGLLAFYGLPLPH 120 (241)
Q Consensus 44 ~~Fe~TsqVPEgLs~hV~SSkKAQanW---YkKLl~AwK~akPpP~T~eeAarLVi~tLk~hqkadvEGLL~FYGLP~P~ 120 (241)
+.|.+... +++.-..|.+|+..=..| -+.|+. + +.+.+|+...|-.-|+.-.|.-| |.+=|+++|.
T Consensus 116 laFSii~~-~~~~L~fvA~s~~~~~~W~DGL~~Llg-----~--~~~S~et~~~v~~Ll~m~lklrL---Ldle~v~ip~ 184 (203)
T 3a98_B 116 LAFSILYD-SNCQLNFIAPDKHEYCIWTDGLNALLG-----K--DMMSDLTRNDLDTLLSMEIKLRL---LDLENIQIPD 184 (203)
T ss_dssp GEEEEEET-TTEEEEEECSSHHHHHHHHHHHHHHTT-----C--CCCCHHHHHHHHHHHHHHHHHHT---GGGTTCCCCS
T ss_pred eEEEEecC-CCceEEEecCCHHHHHHHHHHHHHHhc-----C--CCCCHHHHHHHHHHHHHHHHHHh---hcccCCcCCC
Confidence 45655544 455668899998888899 455553 2 45556666666555554444432 4446889999
Q ss_pred CCCCCCCCCC
Q 026229 121 TLIPVSTAEP 130 (241)
Q Consensus 121 ~~~~~s~~~P 130 (241)
.|+++|..|+
T Consensus 185 ~~ppip~~P~ 194 (203)
T 3a98_B 185 APPPIPKEPS 194 (203)
T ss_dssp SCCCCCCCCS
T ss_pred CCCCCCcCCC
Confidence 8877765443
No 14
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=32.22 E-value=14 Score=28.05 Aligned_cols=21 Identities=38% Similarity=0.741 Sum_probs=12.9
Q ss_pred ccCCCCceEEEEe-cCCCcccC
Q 026229 141 AIPDGDTITVYVS-AADPRESA 161 (241)
Q Consensus 141 aVaDGDt~TvYVd-T~DprEs~ 161 (241)
.+.|||.|-+|=. +.||.|..
T Consensus 73 ~L~dGDRVEIyrpl~~DPk~~R 94 (97)
T 2hj1_A 73 VLKEGDRIEIYRPLLADPKEIR 94 (97)
T ss_dssp BCCTTCEEEECCCCC-------
T ss_pred cCCCCCEEEEEecccCCHHHHh
Confidence 4889999999999 99998865
No 15
>3k4i_A Uncharacterized protein; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; 1.69A {Pseudomonas syringae PV}
Probab=31.14 E-value=25 Score=30.34 Aligned_cols=48 Identities=25% Similarity=0.340 Sum_probs=24.5
Q ss_pred cCCCCceEEEEecCCCcccCCCchHHHHHHHHHHHHHHhhChHhHHH------HHHHHHHccceee
Q 026229 142 IPDGDTITVYVSAADPRESACVPGDVQMAAVRRSKARAERNYEQADA------LHQKIINAGYRLA 201 (241)
Q Consensus 142 VaDGDt~TvYVdT~DprEs~~VP~eV~~Aa~~R~~ARa~rdY~~ADa------Lqk~I~dAGYRvi 201 (241)
|+|.|||-| ||++.-+.++++++++.+++-...++ |...+.+-||..+
T Consensus 172 ~aD~dGVVv------------iP~~~a~eVl~~A~~~~~~E~~~~~~i~~G~~l~ea~~~~~~~~~ 225 (244)
T 3k4i_A 172 VCDGSGCVV------------VPQQLAAEVVLRARAVEQTERRIIEAISSGSTLEQARMTYRYDQP 225 (244)
T ss_dssp EEETTEEEE------------ECGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHC-------
T ss_pred EEcCCeEEE------------EcHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHhCchhh
Confidence 577777765 46666666666666666655444444 3445556666665
No 16
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=30.67 E-value=25 Score=20.97 Aligned_cols=15 Identities=20% Similarity=0.569 Sum_probs=10.8
Q ss_pred HHHHHHHHHccceee
Q 026229 187 DALHQKIINAGYRLA 201 (241)
Q Consensus 187 DaLqk~I~dAGYRvi 201 (241)
+.|.+.|.++||.++
T Consensus 52 ~~i~~~i~~~G~~~~ 66 (66)
T 1yg0_A 52 DLIKEALLDAGQEVV 66 (66)
T ss_dssp HHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHcCCCcC
Confidence 556777888888753
No 17
>1bwd_A ADT, protein (inosamine-phosphate amidinotransferase); streptomycin; 3.10A {Streptomyces griseus} SCOP: d.126.1.2
Probab=27.77 E-value=23 Score=31.19 Aligned_cols=29 Identities=17% Similarity=0.058 Sum_probs=24.3
Q ss_pred HHHHHHHHHccceeeecCCcccccccCCC
Q 026229 187 DALHQKIINAGYRLAIHLGDKSSKQRGSS 215 (241)
Q Consensus 187 DaLqk~I~dAGYRvi~~~g~~~~~~~~~~ 215 (241)
..+++.|.++|++||..-..|+.|..|+-
T Consensus 302 ~~~~~~L~~~G~~vi~v~~~el~~ggGg~ 330 (348)
T 1bwd_A 302 TALIRLLEKHGMNVLPLQLTHSRTLGGGF 330 (348)
T ss_dssp HHHHHHHHHTTCEEEEECCTTHHHHTCCT
T ss_pred HHHHHHHHHCCCEEEEEchHHHhcCCCCc
Confidence 34566677889999999999999999875
No 18
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=27.67 E-value=48 Score=21.65 Aligned_cols=23 Identities=13% Similarity=0.262 Sum_probs=15.9
Q ss_pred HHHHHHHHHHccceeeecCCccc
Q 026229 186 ADALHQKIINAGYRLAIHLGDKS 208 (241)
Q Consensus 186 ADaLqk~I~dAGYRvi~~~g~~~ 208 (241)
.+.+.+.|.++||.......++.
T Consensus 60 ~~~i~~~i~~~Gy~~~~~~~~~~ 82 (84)
T 1q8l_A 60 VEEMKKQIEAMGFPAFVKKQPKY 82 (84)
T ss_dssp HHHHHHHHHHTTCCEECSCCTTT
T ss_pred HHHHHHHHHHcCCceEecCCccc
Confidence 35677778899998765554443
No 19
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=27.33 E-value=54 Score=21.13 Aligned_cols=20 Identities=20% Similarity=0.373 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHccceeeecC
Q 026229 185 QADALHQKIINAGYRLAIHL 204 (241)
Q Consensus 185 ~ADaLqk~I~dAGYRvi~~~ 204 (241)
..+.|++.|.++||.+....
T Consensus 50 ~~~~i~~~i~~~Gy~~~~~~ 69 (73)
T 3fry_A 50 DVDKYIKAVEAAGYQAKLRS 69 (73)
T ss_dssp GHHHHHHHHHHTTCEEEECC
T ss_pred CHHHHHHHHHHcCCceEecC
Confidence 56789999999999987654
No 20
>2fi0_A Conserved domain protein; structural genomics,streptococcus pneumoniae, PSI, protein S initiative; 2.10A {Streptococcus pneumoniae} SCOP: a.248.1.1
Probab=26.55 E-value=43 Score=23.85 Aligned_cols=24 Identities=13% Similarity=0.225 Sum_probs=18.1
Q ss_pred HHHhhChHhHHHHHHHHHHccceee
Q 026229 177 ARAERNYEQADALHQKIINAGYRLA 201 (241)
Q Consensus 177 ARa~rdY~~ADaLqk~I~dAGYRvi 201 (241)
|-+.+.. ..|+|.+.|.++||.|+
T Consensus 55 aa~~~gi-d~d~l~~~L~~~g~~~~ 78 (81)
T 2fi0_A 55 GSKLAGT-PMDKIVRTLEANGYEVI 78 (81)
T ss_dssp HHHHHTC-CHHHHHHHHHHTTCEEE
T ss_pred HHHHcCC-CHHHHHHHHHHcCCEee
Confidence 3334444 36889999999999997
No 21
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=25.29 E-value=61 Score=26.50 Aligned_cols=61 Identities=16% Similarity=0.210 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHHHhhhccchhhhhhhhhCCCCCCCCCCCCCCCCCCCCC---CCCCCccCCCCceEEEEe
Q 026229 87 TAEEAARLVIQTLSRHKKADVEGLLAFYGLPLPHTLIPVSTAEPTTLPA---GVDARAIPDGDTITVYVS 153 (241)
Q Consensus 87 T~eeAarLVi~tLk~hqkadvEGLL~FYGLP~P~~~~~~s~~~P~s~P~---GVdaKaVaDGDt~TvYVd 153 (241)
.-++||+|+++++.+-...- .||.-+.+...+..-...-++|. =.+...+..||.|=++-.
T Consensus 23 ~I~~AA~llaqai~~~g~Iy------vfG~Ghs~~~~~e~~~~~e~l~~~~~~~~~~~i~~~D~vii~S~ 86 (170)
T 3jx9_A 23 ELFDVVRLLAQALVGQGKVY------LDAYGEFEGLYPMLSDGPDQMKRVTKIKDHKTLHAVDRVLIFTP 86 (170)
T ss_dssp HHHHHHHHHHHHHHTTCCEE------EEECGGGGGGTHHHHTSTTCCTTEEECCTTCCCCTTCEEEEEES
T ss_pred HHHHHHHHHHHHHhCCCEEE------EECCCcHHHHHHHHHcccCCccchhhhhhcCCCCCCCEEEEEeC
Confidence 56899999999998754333 33333322221111011122221 044558899999988765
No 22
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=24.80 E-value=39 Score=21.49 Aligned_cols=19 Identities=21% Similarity=0.511 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHccceeeec
Q 026229 185 QADALHQKIINAGYRLAIH 203 (241)
Q Consensus 185 ~ADaLqk~I~dAGYRvi~~ 203 (241)
..++|.+.|.++||.+...
T Consensus 52 ~~~~i~~~i~~~Gy~~~~~ 70 (74)
T 3dxs_X 52 KEEDIKEEIEDAGFEAEIL 70 (74)
T ss_dssp CHHHHHHHHHHHTCEEEEE
T ss_pred CHHHHHHHHHHCCCceEEc
Confidence 3567888899999997544
No 23
>1zl0_A Hypothetical protein PA5198; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; HET: TLA PEG; 1.10A {Pseudomonas aeruginosa} SCOP: c.8.10.1 c.23.16.7 PDB: 1zrs_A 2aum_A 2aun_A
Probab=24.11 E-value=93 Score=27.46 Aligned_cols=61 Identities=16% Similarity=0.165 Sum_probs=41.3
Q ss_pred CCCCccCCCCceEEEEecCCCcccCCCchHHHHHHHHHHHHH-----------------HhhChHhHHHHHHHHHHccce
Q 026229 137 VDARAIPDGDTITVYVSAADPRESACVPGDVQMAAVRRSKAR-----------------AERNYEQADALHQKIINAGYR 199 (241)
Q Consensus 137 VdaKaVaDGDt~TvYVdT~DprEs~~VP~eV~~Aa~~R~~AR-----------------a~rdY~~ADaLqk~I~dAGYR 199 (241)
|+++...-||+|-+.-... + ++.+..+.+++|=+.. +-.+-++|++|+.-+.|-..+
T Consensus 9 ~~~~~L~~Gd~I~ivaPSs-~-----~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~ 82 (311)
T 1zl0_A 9 SDQTWQPIDGRVALIAPAS-A-----IATDVLEATLRQLEVHGVDYHLGRHVEARYRYLAGTVEQRLEDLHNAFDMPDIT 82 (311)
T ss_dssp CCCCCCCCCSEEEEECCSB-C-----CCHHHHHHHHHHHHHTTCCEEECTTTTCCBTTBSSCHHHHHHHHHHHHHSTTEE
T ss_pred CccccCCCcCEEEEEeCCC-C-----CCHHHHHHHHHHHHhCCCEEEECccccccccccCCCHHHHHHHHHHHHhCCCCC
Confidence 6778889999988754432 2 2245456777665442 234557899999999998877
Q ss_pred eeec
Q 026229 200 LAIH 203 (241)
Q Consensus 200 vi~~ 203 (241)
.|.+
T Consensus 83 aI~~ 86 (311)
T 1zl0_A 83 AVWC 86 (311)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6655
No 24
>1jdw_A L-arginine\:glycine amidinotransferase; creatine biosynthesis, catalytic triad, reaction mechanism, novel fold, fivefold pseudosymmetry; 1.90A {Homo sapiens} SCOP: d.126.1.2 PDB: 2jdw_A 3jdw_A* 4jdw_A* 8jdw_A 5jdw_A 6jdw_A* 1jdx_A* 7jdw_A 9jdw_A* 2jdx_A
Probab=23.92 E-value=27 Score=32.05 Aligned_cols=29 Identities=7% Similarity=-0.048 Sum_probs=25.1
Q ss_pred HHHHHHHHHccceeeecCCcccccccCCC
Q 026229 187 DALHQKIINAGYRLAIHLGDKSSKQRGSS 215 (241)
Q Consensus 187 DaLqk~I~dAGYRvi~~~g~~~~~~~~~~ 215 (241)
..+.+.|.++||+||..-..|+.|..|+-
T Consensus 377 ~~~~~~L~~~G~~Vi~v~~~el~kggGg~ 405 (423)
T 1jdw_A 377 VPIQKMFEKLGITTIKVNIRNANSLGGGF 405 (423)
T ss_dssp HHHHHHHHHTTCEEEEECCHHHHTTTCCT
T ss_pred HHHHHHHHHCCCEEEEecHHHHHhCCCCc
Confidence 45667788889999999999999999974
No 25
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A
Probab=23.70 E-value=41 Score=21.51 Aligned_cols=19 Identities=16% Similarity=0.239 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHccceeeec
Q 026229 185 QADALHQKIINAGYRLAIH 203 (241)
Q Consensus 185 ~ADaLqk~I~dAGYRvi~~ 203 (241)
..++|.+.|.++||.....
T Consensus 47 ~~~~i~~~i~~~Gy~~~~~ 65 (68)
T 3iwl_A 47 SMDTLLATLKKTGKTVSYL 65 (68)
T ss_dssp CHHHHHHHHHTTCSCEEEE
T ss_pred CHHHHHHHHHHcCCceEec
Confidence 4677889999999987643
No 26
>4azz_A Levanase; hydrolase; 1.70A {Bacillus subtilis}
Probab=29.18 E-value=17 Score=27.92 Aligned_cols=22 Identities=14% Similarity=0.447 Sum_probs=18.3
Q ss_pred CCCC--CCCCccCCCCceEEEEec
Q 026229 133 LPAG--VDARAIPDGDTITVYVSA 154 (241)
Q Consensus 133 ~P~G--VdaKaVaDGDt~TvYVdT 154 (241)
++.| -+-+.+++|+.|++||+-
T Consensus 107 ~~~g~w~~l~I~~~G~~i~~~vnG 130 (172)
T 4azz_A 107 IDVNKKYHLKTEAEGDRFKIYLDD 130 (172)
Confidence 4445 788899999999999984
No 27
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=23.20 E-value=29 Score=32.48 Aligned_cols=13 Identities=15% Similarity=0.493 Sum_probs=11.5
Q ss_pred CccCCCCceEEEE
Q 026229 140 RAIPDGDTITVYV 152 (241)
Q Consensus 140 KaVaDGDt~TvYV 152 (241)
..|.|||||+|++
T Consensus 214 ~~V~DGDT~~v~~ 226 (570)
T 3bdl_A 214 EYVFSGSRLKLYL 226 (570)
T ss_dssp EEESSSSEEEEEE
T ss_pred EEEeCCCEEEEEE
Confidence 4689999999997
No 28
>2gjh_A Designed protein; obligate symmetric HOMO-dimer, de novo protein; NMR {}
Probab=22.80 E-value=28 Score=25.13 Aligned_cols=13 Identities=46% Similarity=0.483 Sum_probs=9.5
Q ss_pred CCccCCCCceEEE
Q 026229 139 ARAIPDGDTITVY 151 (241)
Q Consensus 139 aKaVaDGDt~TvY 151 (241)
-+.-=||||+||-
T Consensus 35 invtwdgdtvtve 47 (62)
T 2gjh_A 35 INVTWDGDTVTVE 47 (62)
T ss_dssp CEEEECSSCEEEE
T ss_pred ceeEEcCCEEEEE
Confidence 3445699999984
No 29
>3a9l_A Poly-gamma-glutamate hydrolase; zinc ION binding, open alpha/beta mixed core structure; 1.90A {Bacillus phage PHINIT1}
Probab=22.62 E-value=74 Score=27.62 Aligned_cols=37 Identities=8% Similarity=0.133 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHccceeeecCCcccccccCCCcccccCcccc
Q 026229 185 QADALHQKIINAGYRLAIHLGDKSSKQRGSSSTKVSNSTKR 225 (241)
Q Consensus 185 ~ADaLqk~I~dAGYRvi~~~g~~~~~~~~~~~~~~~~~~~~ 225 (241)
.++++.+.|.++||.|. .+-+...|-+...+.|-+++
T Consensus 122 l~~~I~~~L~~~Gf~v~----~~~~~l~G~~p~NivNr~~~ 158 (216)
T 3a9l_A 122 LRNLIVSKLNSKGIAAE----VATDRFTATDPDNIVNRCAS 158 (216)
T ss_dssp HHHHHHHHHHHTTCCCE----ECCSSCCCCSSCSGGGGSTT
T ss_pred HHHHHHHHHHhCCeeee----eCCCCCCCCCccccccccCC
Confidence 57888899999999998 23345667777777776654
No 30
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=21.34 E-value=57 Score=20.29 Aligned_cols=16 Identities=25% Similarity=0.436 Sum_probs=12.4
Q ss_pred HHHHHHHHHHccceee
Q 026229 186 ADALHQKIINAGYRLA 201 (241)
Q Consensus 186 ADaLqk~I~dAGYRvi 201 (241)
.++|.+.|.++||...
T Consensus 52 ~~~i~~~i~~~Gy~~~ 67 (69)
T 4a4j_A 52 PQILTDAVERAGYHAR 67 (69)
T ss_dssp HHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHcCCceE
Confidence 4567788899999864
No 31
>1gxs_B P-(S)-hydroxymandelonitrIle lyase chain B; inhibitor complex, cyanogenesis mechanism; HET: NAG FUL DKA; 2.3A {Sorghum bicolor} SCOP: c.69.1.5
Probab=21.18 E-value=37 Score=26.63 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=17.5
Q ss_pred HHHHHHHHHHccceeeecCCcc
Q 026229 186 ADALHQKIINAGYRLAIHLGDK 207 (241)
Q Consensus 186 ADaLqk~I~dAGYRvi~~~g~~ 207 (241)
.-.+...|.++|+||+.+.||-
T Consensus 55 ~~~~~~~Ll~~girVliysGd~ 76 (158)
T 1gxs_B 55 LLPVYRELIQAGLRVWVYSGDT 76 (158)
T ss_dssp CHHHHHHHHHTTCEEEEEEETT
T ss_pred HHHHHHHHHHcCCeEEEEeccc
Confidence 3445677888999999999984
No 32
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=20.66 E-value=1.8e+02 Score=25.20 Aligned_cols=64 Identities=11% Similarity=0.094 Sum_probs=45.5
Q ss_pred CCCCHHHHHHHHHHHHhhhccchhhhhhhhhCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCceEEEEecC--CCcccC
Q 026229 84 PPTTAEEAARLVIQTLSRHKKADVEGLLAFYGLPLPHTLIPVSTAEPTTLPAGVDARAIPDGDTITVYVSAA--DPRESA 161 (241)
Q Consensus 84 pP~T~eeAarLVi~tLk~hqkadvEGLL~FYGLP~P~~~~~~s~~~P~s~P~GVdaKaVaDGDt~TvYVdT~--DprEs~ 161 (241)
|--|.|||..|++++|..-..-| .--|+.|-+.|=|+ +..+..
T Consensus 185 ~~ms~eEAv~la~~al~~a~~~~-----------------------------------~~~~~~iev~vIt~~~~~~~~~ 229 (288)
T 3nzj_F 185 EGLSAREAVKQAAKIIYLAHEDN-----------------------------------KEKDFELEISWCSLSETNGLHK 229 (288)
T ss_dssp TCCCHHHHHHHHHHHHHHHGGGG-----------------------------------TTSEEEEEEEEEETTTSTTCCE
T ss_pred CCCCHHHHHHHHHHHHHHHHhcc-----------------------------------cCCCCeEEEEEEEecCCCceEE
Confidence 45799999999999997543321 12356788877777 566778
Q ss_pred CCchHHHHHHHHHHHHHHhhC
Q 026229 162 CVPGDVQMAAVRRSKARAERN 182 (241)
Q Consensus 162 ~VP~eV~~Aa~~R~~ARa~rd 182 (241)
.||.|+.+.|.+.+++-.+-+
T Consensus 230 ~vp~~~~~~~~~~~~~~~~~~ 250 (288)
T 3nzj_F 230 FVKGDLLQEAIDFAQKEINGD 250 (288)
T ss_dssp ECCHHHHHHHHHHHHHHTC--
T ss_pred ECCHHHHHHHHHHHHHHhhcc
Confidence 999999988887776654433
No 33
>3oq0_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.70A {Saccharomyces cerevisiae}
Probab=20.23 E-value=2.2e+02 Score=23.65 Aligned_cols=59 Identities=14% Similarity=0.246 Sum_probs=35.9
Q ss_pred CCCCccCCCCceEEEEecCCCcccCCCchHHHHHHHHHHHHHHhhChHhHHHHHHHHHHccceeeecCCccccc
Q 026229 137 VDARAIPDGDTITVYVSAADPRESACVPGDVQMAAVRRSKARAERNYEQADALHQKIINAGYRLAIHLGDKSSK 210 (241)
Q Consensus 137 VdaKaVaDGDt~TvYVdT~DprEs~~VP~eV~~Aa~~R~~ARa~rdY~~ADaLqk~I~dAGYRvi~~~g~~~~~ 210 (241)
|+-|-|---|+ .||.||.+..+.. .++.+-.+|++ +-|++.|..-|-+|.++-+.+|.-
T Consensus 15 ~~WrkIM~r~s-~iYFdt~~~~~~~----~~~~~~l~k~~----------~llkk~f~~LGa~I~~FFd~~VTi 73 (151)
T 3oq0_A 15 VPRGSHMKRDS-RIYFDITDDVEMN----TYNKSKMDKRR----------DLLKRGFLTLGAQITQFFDTTVTI 73 (151)
T ss_dssp ------CCCCC-EEEECCCCSSCCC----HHHHHHHHHHH----------HHHHHHHHHHTCEEESSCCTTCCE
T ss_pred ccHHHHhccCC-EEEEeCCCcchhh----HHHHHHHHHHH----------HHHHHHHHHcCCEEeeecCCceEE
Confidence 55565554444 4899999876554 22233333322 346689999999999999998753
Done!