RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 026229
         (241 letters)



>d1itza1 c.36.1.10 (A:10-347) Transketolase (TK), PP module {Maize
           (Zea mays) [TaxId: 4577]}
          Length = 338

 Score = 29.4 bits (65), Expect = 0.42
 Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 6/50 (12%)

Query: 45  HFEITSQVPEGLTRHVTSSKKAQANWYRKLSEAWREAKPPPTTAEEAARL 94
            F +   V    +RH       +A+W  K    + +        ++AA L
Sbjct: 288 TFFVPEDVKSHWSRHTPEGAALEADWNAKF-AEYEKKYA-----DDAATL 331


>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter
           capsulatus [TaxId: 1061]}
          Length = 396

 Score = 27.6 bits (60), Expect = 1.4
 Identities = 7/29 (24%), Positives = 10/29 (34%)

Query: 84  PPTTAEEAARLVIQTLSRHKKADVEGLLA 112
            PT      RL       H    ++GL+ 
Sbjct: 362 FPTVPRGTERLRFTPSPVHDLKQIDGLVH 390


>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC
          {Human (Homo sapiens), ubc9 [TaxId: 9606]}
          Length = 156

 Score = 27.1 bits (59), Expect = 1.5
 Identities = 6/30 (20%), Positives = 10/30 (33%)

Query: 26 PHGVSAATVGVSALAQDLYHFEITSQVPEG 55
          P G  A          +L ++E      +G
Sbjct: 19 PFGFVAVPTKNPDGTMNLMNWECAIPGKKG 48


>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase
           (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli
           [TaxId: 562]}
          Length = 383

 Score = 26.8 bits (58), Expect = 2.7
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 84  PPTTAEEAARLVIQTLSRHKKADVEGLLA 112
           PPT     ARL +   + H+  D++ LL 
Sbjct: 349 PPTVPAGTARLRLTLTAAHEMQDIDRLLE 377


>d2a5sa1 c.94.1.1 (A:7-142,A:145-285) N-methyl-D-aspartate receptor
           subunit 1 {Rat (Rattus norvegicus), subtype 2A [TaxId:
           10116]}
          Length = 277

 Score = 26.2 bits (56), Expect = 4.2
 Identities = 13/97 (13%), Positives = 22/97 (22%), Gaps = 6/97 (6%)

Query: 150 VYVSAADPRESACVPGDVQMAAVRRSKARAERNYEQADALHQKIINAGYRLAIHLGDK-- 207
           V V   DP    CV   V      +                   I+   +L+  +     
Sbjct: 14  VIVEDIDPLTETCVRNTVPCRKFVKINNSTNEGMNVKKCCKGFCIDILKKLSRTVKFTYD 73

Query: 208 ----SSKQRGSSSTKVSNSTKRHRCTREFNAIWERST 240
               ++ + G     V N        +         T
Sbjct: 74  LYLVTNGKHGKKVNNVWNGMIGEVVYQRAVMAVGSLT 110


>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase
           {Escherichia coli [TaxId: 562]}
          Length = 401

 Score = 26.3 bits (57), Expect = 4.3
 Identities = 5/29 (17%), Positives = 10/29 (34%)

Query: 84  PPTTAEEAARLVIQTLSRHKKADVEGLLA 112
            P   +  AR+  Q  + H    +   + 
Sbjct: 360 YPVVPKGQARIRTQMSAAHTPEQITRAVE 388


>d1ulva3 b.1.9.3 (A:776-1020) Glucodextranase, domain C
           {Arthrobacter globiformis [TaxId: 1665]}
          Length = 245

 Score = 25.3 bits (55), Expect = 7.5
 Identities = 5/20 (25%), Positives = 8/20 (40%)

Query: 135 AGVDARAIPDGDTITVYVSA 154
           + V   A+P+   I   V  
Sbjct: 119 SAVSLLAVPEARQIVTRVPK 138


>d1ak0a_ a.124.1.2 (A:) P1 nuclease {Penicillium citrinum [TaxId:
           5077]}
          Length = 264

 Score = 25.1 bits (54), Expect = 8.0
 Identities = 7/22 (31%), Positives = 10/22 (45%)

Query: 183 YEQADALHQKIINAGYRLAIHL 204
               D +  +I   GYRLA  +
Sbjct: 239 DSVIDTIELQIAKGGYRLANWI 260


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.128    0.374 

Gapped
Lambda     K      H
   0.267   0.0498    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 846,766
Number of extensions: 35635
Number of successful extensions: 90
Number of sequences better than 10.0: 1
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 10
Length of query: 241
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 158
Effective length of database: 1,268,006
Effective search space: 200344948
Effective search space used: 200344948
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.4 bits)