BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026231
(241 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q58DM4|ALKB2_BOVIN Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2 OS=Bos
taurus GN=ALKBH2 PE=2 SV=1
Length = 278
Score = 98.6 bits (244), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 82/258 (31%), Positives = 121/258 (46%), Gaps = 32/258 (12%)
Query: 2 SLRFRAKEKEAKANPDD--DDEKNQKKQRMVVDLGNG--SEVIYFPRI------------ 45
SL+ R ++++ P ++E N KK GNG S + + RI
Sbjct: 12 SLKRRMEQEQTGGGPAGLAEEEGNSKKNPRRAAPGNGVDSAGLTWGRIRAEGLNCDYTIL 71
Query: 46 IKMEDSWKFFDYLNNRIPW---NRPTIRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHP 102
++ + F L + + ++VFG+ PR G+T +SG P
Sbjct: 72 FGKAEADEIFQELEKEVEYFTGALARVQVFGKWHSVPRKQATYGDTGLT-YTFSGLTLSP 130
Query: 103 YSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVS 162
W P L+ + D V ++ G FN +L+NRYK G D++G H DDE+ IASVS
Sbjct: 131 KPW--IPVLERVRDRV-SLVTGQTFNFVLINRYKDGQDHIGEHRDDERELALGSPIASVS 187
Query: 163 FGCERDFLLKIKPNRRTDDEPVSKRLKKKGNLDQHSFTLKHGSMLVMRGYTQRDWIHSVP 222
FG RDF+ + K +R P S+R L+ L HGS+L+M T W HS+P
Sbjct: 188 FGACRDFVFRHKDSR--GKHP-SRR------LEVVRLQLAHGSLLMMNHPTNTHWYHSLP 238
Query: 223 RRAKAESTRINLTFRHVL 240
R K + R+NLTFR +L
Sbjct: 239 VRKKVLAPRVNLTFRKIL 256
>sp|Q32L00|ALKB3_BOVIN Alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 OS=Bos
taurus GN=ALKBH3 PE=2 SV=1
Length = 286
Score = 97.8 bits (242), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 100/206 (48%), Gaps = 19/206 (9%)
Query: 37 SEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYS 96
S V P + ++++ F+ L +PW + T + QPR T + G YS
Sbjct: 88 SRVCLCPGFVDLKEADSVFEQLCRDVPWKQRTGIRDDVTYQQPRLTAWY---GELPYTYS 144
Query: 97 --GYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGS 154
P+P+ + P+ +L ++ G FNSLL N Y+ D V WH+DDE G
Sbjct: 145 RITMEPNPH----WHPVLLMLKNQIEENTGHSFNSLLCNLYRNEKDSVDWHSDDEPSLGR 200
Query: 155 TPEIASVSFGCERDFLLKIKPNRRTD-DEPVSKRLKKKGNLDQHSFTLKHGSMLVMRGYT 213
P IAS+SFG R F ++ KP + D +R+K L HG++L+M G T
Sbjct: 201 CPIIASLSFGATRMFEMRKKPPPEDNGDYTYVERVK---------IPLDHGTLLIMEGAT 251
Query: 214 QRDWIHSVPRRAKAESTRINLTFRHV 239
Q DW H VP+ + RINLTFR V
Sbjct: 252 QADWQHRVPKEYHSREPRINLTFRTV 277
>sp|Q6P6J4|ALKB2_MOUSE Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2 OS=Mus
musculus GN=Alkbh2 PE=1 SV=1
Length = 239
Score = 97.4 bits (241), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 91/172 (52%), Gaps = 13/172 (7%)
Query: 69 IRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFN 128
++VFG+ PR G+T +SG P W P L+ + D V +V G FN
Sbjct: 77 VQVFGKWHSVPRKQATYGDAGLT-YTFSGLTLTPKPW--VPVLERVRDRVCEVT-GQTFN 132
Query: 129 SLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPNRRTDDEPVSKRL 188
+L+NRYK G D++G H DDE+ IASVSFG RDF+ + K +R KR
Sbjct: 133 FVLVNRYKDGCDHIGEHRDDERELAPGSPIASVSFGACRDFIFRHKDSR-------GKRP 185
Query: 189 KKKGNLDQHSFTLKHGSMLVMRGYTQRDWIHSVPRRAKAESTRINLTFRHVL 240
++ ++ L HGS+L+M T W HS+P R + + R+NLTFR +L
Sbjct: 186 RR--TVEVVRLQLAHGSLLMMNPPTNTHWYHSLPIRKRVLAPRVNLTFRKIL 235
>sp|Q6NS38|ALKB2_HUMAN Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2 OS=Homo
sapiens GN=ALKBH2 PE=1 SV=1
Length = 261
Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 89/172 (51%), Gaps = 13/172 (7%)
Query: 69 IRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFN 128
++VFG+ PR G+T +SG P W P L+ I D V V G FN
Sbjct: 99 VQVFGKWHSVPRKQATYGDAGLT-YTFSGLTLSPKPW--IPVLERIRDHVSGVT-GQTFN 154
Query: 129 SLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPNRRTDDEPVSKRL 188
+L+NRYK G D++G H DDE+ IASVSFG RDF+ + K +R + S+R+
Sbjct: 155 FVLINRYKDGCDHIGEHRDDERELAPGSPIASVSFGACRDFVFRHKDSR---GKSPSRRV 211
Query: 189 KKKGNLDQHSFTLKHGSMLVMRGYTQRDWIHSVPRRAKAESTRINLTFRHVL 240
L HGS+L+M T W HS+P R K + R+NLTFR +L
Sbjct: 212 AVV------RLPLAHGSLLMMNHPTNTHWYHSLPVRKKVLAPRVNLTFRKIL 257
>sp|Q96Q83|ALKB3_HUMAN Alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 OS=Homo
sapiens GN=ALKBH3 PE=1 SV=1
Length = 286
Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 100/208 (48%), Gaps = 23/208 (11%)
Query: 37 SEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYS 96
S V +P + ++++ + L +PW + T + QPR T + +L Y+
Sbjct: 88 SRVCLYPGFVDVKEADWILEQLCQDVPWKQRTGIREDITYQQPRLTAWYG-----ELPYT 142
Query: 97 GYR----PHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLY 152
R P+P+ + P+ L ++ G FNSLL N Y+ D V WH+DDE
Sbjct: 143 YSRITMEPNPH----WHPVLRTLKNRIEENTGHTFNSLLCNLYRNEKDSVDWHSDDEPSL 198
Query: 153 GSTPEIASVSFGCERDFLLKIK-PNRRTDDEPVSKRLKKKGNLDQHSFTLKHGSMLVMRG 211
G P IAS+SFG R F ++ K P D +R+K L HG++L+M G
Sbjct: 199 GRCPIIASLSFGATRTFEMRKKPPPEENGDYTYVERVK---------IPLDHGTLLIMEG 249
Query: 212 YTQRDWIHSVPRRAKAESTRINLTFRHV 239
TQ DW H VP+ + R+NLTFR V
Sbjct: 250 ATQADWQHRVPKEYHSREPRVNLTFRTV 277
>sp|Q5XIC8|ALKB3_RAT Alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 OS=Rattus
norvegicus GN=Alkbh3 PE=2 SV=1
Length = 295
Score = 94.0 bits (232), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 100/208 (48%), Gaps = 23/208 (11%)
Query: 37 SEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYS 96
S V +P + ++++ + L +PW + + QPR T + +L Y+
Sbjct: 88 SRVCLYPGFVDLKEADWILERLCQDVPWKQRMGIREDITYPQPRLTAWYG-----ELPYT 142
Query: 97 GYR----PHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLY 152
R P+P+ + P+ L ++ G FNSLL N Y+ D V WH+DDE
Sbjct: 143 YSRVTMEPNPH----WLPVLWTLKSRIEENTGHTFNSLLCNFYRDEKDSVDWHSDDEPSL 198
Query: 153 GSTPEIASVSFGCERDFLLKIK-PNRRTDDEPVSKRLKKKGNLDQHSFTLKHGSMLVMRG 211
GS P IAS+SFG R F ++ K P D +R+K L HG++L+M G
Sbjct: 199 GSCPVIASLSFGATRTFEMRKKPPPEENGDYTYVERVK---------IPLDHGTLLIMEG 249
Query: 212 YTQRDWIHSVPRRAKAESTRINLTFRHV 239
TQ DW H VP+ + R+NLTFR V
Sbjct: 250 ATQADWQHRVPKEYHSRERRVNLTFRTV 277
>sp|Q8K1E6|ALKB3_MOUSE Alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 OS=Mus
musculus GN=Alkbh3 PE=1 SV=1
Length = 286
Score = 92.4 bits (228), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 97/206 (47%), Gaps = 19/206 (9%)
Query: 37 SEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYS 96
S V +P + ++++ + L +PW + + QPR T + G YS
Sbjct: 88 SRVCLYPGFVDLKEADWILEQLCKDVPWKQRMGIREDVTYPQPRLTAWY---GELPYTYS 144
Query: 97 --GYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGS 154
P+P+ + P+ L ++ FNSLL N Y+ D V WH+DDE GS
Sbjct: 145 RITMEPNPH----WLPVLWTLKSRIEENTSHTFNSLLCNFYRDEKDSVDWHSDDEPSLGS 200
Query: 155 TPEIASVSFGCERDFLLKIK-PNRRTDDEPVSKRLKKKGNLDQHSFTLKHGSMLVMRGYT 213
P IAS+SFG R F ++ K P D +R+K L HG++L+M G T
Sbjct: 201 CPVIASLSFGATRTFEMRKKPPPEENGDYTYVERVK---------IPLDHGTLLIMEGAT 251
Query: 214 QRDWIHSVPRRAKAESTRINLTFRHV 239
Q DW H VP+ + R+NLTFR V
Sbjct: 252 QADWQHRVPKEYHSRQPRVNLTFRTV 277
>sp|Q91QZ3|RDRP_CLBVS RNA replication protein OS=Citrus leaf blotch virus (isolate Nagami
kumquat/France/SRA-153/1984) GN=ORF1 PE=3 SV=1
Length = 1962
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 34/142 (23%)
Query: 100 PHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIA 159
PH SW P L++I+ I + G FN L+N Y+ N +G+H D+E++Y P +
Sbjct: 854 PHN-SW--VPSLEEIIQICGQ---GDDFNCALINFYEA-NSSLGFHRDNERVYNDDPILT 906
Query: 160 SVSFGCERDFLLKIKPNRRTDDEPVSKRLKKKGNLDQ-HSFTLKHGSMLVMRGYTQRDWI 218
+FG E F ++ K DQ SF + GS +M Q+
Sbjct: 907 VCTFG-EGRFTIEFK--------------------DQVTSFLMTAGSFFLMPKGFQKKAR 945
Query: 219 HSVPRRAKAESTRINLTFR-HV 239
HSV E +R+++TFR HV
Sbjct: 946 HSVSN----EMSRVSITFRKHV 963
>sp|Q5UQK2|YR406_MIMIV Uncharacterized protein R406 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_R406 PE=4 SV=1
Length = 191
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 57/133 (42%), Gaps = 19/133 (14%)
Query: 108 FPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCER 167
F P +L ++ + G F+S L+ Y G D +G+H D + G IA V+FG R
Sbjct: 69 FTPTVHMLKKKIEEIIGVEFDSALIFHYIDGKDSMGYHYDTIGV-GRGNHIAGVTFGSSR 127
Query: 168 DFLLKIKPNRRTDDEPVSKRLKKKGNLDQHSFTLKHGSMLVMRGYTQRDWIHSV-PRRAK 226
L ++ N + E F L +G + M Q+ + H++ + +
Sbjct: 128 --CLGVRNNETNEKE---------------FFNLGNGDIFYMFDDCQKKYKHAILESKEE 170
Query: 227 AESTRINLTFRHV 239
RI +TFR +
Sbjct: 171 NPGPRIAITFRQM 183
>sp|B1PS76|RDRP_LOLV RNA-directed RNA polymerase OS=Lolium latent virus (isolate
Lolium/USA/US1/-) GN=ORF1 PE=3 SV=1
Length = 1729
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 60/141 (42%), Gaps = 23/141 (16%)
Query: 98 YRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPE 157
Y H + + P+ D L + L + ++ L+ RY+ + VG HADDE+ Y
Sbjct: 715 YGRHEHRSQSWLPVIDSLQVALGL--DESYDHCLIQRYRK-HARVGLHADDEECYEPDST 771
Query: 158 IASVSFGCERDFLLKIKPNRRTDDEPVSKRLKKKGNLDQHSFTLKHGSMLVMRGYTQRDW 217
I +++ DFL++ R TD + TL+H ML M Q
Sbjct: 772 IVTLNLYGNADFLIE----RNTDKA-------------SETITLQHNDMLFMPSGMQVTH 814
Query: 218 IHSVPRRAKAESTRINLTFRH 238
H+V R+++TFR+
Sbjct: 815 RHAV---CSLYEGRVSITFRN 832
>sp|Q918W3|RDRP_ICRSV RNA replication protein OS=Indian citrus ringspot virus (isolate
Kinnow mandarin/India/K1/1996) GN=ORF1 PE=3 SV=1
Length = 1658
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 23/112 (20%)
Query: 126 RFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPNRRTDDEPVS 185
+FN+ L + G +G+HADDE Y +A+V+ F LK RT
Sbjct: 574 KFNTCLAQTHDQGAR-IGYHADDEDCYDKDVTVATVNLTGNATFSLKTATGTRT------ 626
Query: 186 KRLKKKGNLDQHSFTLKHGSMLVMRGYTQRDWIHSVPRRAKAESTRINLTFR 237
+ LK G +V++ Q H++ + + R +LTFR
Sbjct: 627 -------------WKLKPGDFIVLKPGAQGCTKHAI---SDCTTNRTSLTFR 662
>sp|O71189|R1AB_GLRV3 Replicase polyprotein 1ab OS=Grapevine leafroll-associated virus 3
(isolate United States/NY1) GN=1a-1b PE=3 SV=3
Length = 2772
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 21/122 (17%)
Query: 116 DIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKP 175
DI+ + S F+ L+ +YK G V +HADDE+ Y S I +V+ + +F
Sbjct: 1591 DILTAIKYPSVFDHCLVQKYKMGGG-VPFHADDEECYPSDNPILTVNLVGKANF------ 1643
Query: 176 NRRTDDEPVSKRLKKKGNLDQHSFTLKHGSMLVMRGYTQRDWIHSVPRRAKAESTRINLT 235
S + +K G + + G +M QR +HSV + RI+LT
Sbjct: 1644 ---------STKCRKGGKV--MVINVASGDYFLMPCGFQRTHLHSVN---SIDEGRISLT 1689
Query: 236 FR 237
FR
Sbjct: 1690 FR 1691
>sp|O71188|R1A_GLRV3 Replicase protein 1a OS=Grapevine leafroll-associated virus 3
(isolate United States/NY1) GN=1a PE=3 SV=2
Length = 2233
Score = 36.6 bits (83), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 21/122 (17%)
Query: 116 DIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKP 175
DI+ + S F+ L+ +YK G V +HADDE+ Y S I +V+ + +F
Sbjct: 1591 DILTAIKYPSVFDHCLVQKYKMGGG-VPFHADDEECYPSDNPILTVNLVGKANF------ 1643
Query: 176 NRRTDDEPVSKRLKKKGNLDQHSFTLKHGSMLVMRGYTQRDWIHSVPRRAKAESTRINLT 235
S + +K G + + G +M QR +HSV + RI+LT
Sbjct: 1644 ---------STKCRKGGKV--MVINVASGDYFLMPCGFQRTHLHSV---NSIDEGRISLT 1689
Query: 236 FR 237
FR
Sbjct: 1690 FR 1691
>sp|A0AUJ5|POLG_BVY3 Genome polyprotein OS=Blackberry virus Y (isolate Blackberry
plant/USA: Arkansas/C3ARK/2005) PE=3 SV=1
Length = 3491
Score = 35.4 bits (80), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 60/142 (42%), Gaps = 26/142 (18%)
Query: 98 YRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPE 157
Y HP +D P D LD K L G+++N+ L+ Y G D + +H DDE Y T
Sbjct: 159 YGHHPIYYDTHP-WNDELD---KYLGGAKYNTALVQVYDGTRD-LPYHKDDEPCYDITNN 213
Query: 158 -IASVSFGCERDFLLKIKPNRRTDDEPVSKRLKKKGNLDQHSFTLKHGSMLVMRGYTQRD 216
I +V+ D + R + P++ G+++ Q +
Sbjct: 214 PIRTVNVTGTGDLCISKDKRRLYETIPMTS-----------------GTVITFPATMQEN 256
Query: 217 WIHSVPRRAKAESTRINLTFRH 238
+ H+V + RI++TFR+
Sbjct: 257 FYHAV---RNPSAGRISITFRN 275
>sp|Q9UT12|YLW2_SCHPO Uncharacterized protein P8A3.02c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAP8A3.02c PE=3 SV=1
Length = 225
Score = 34.3 bits (77), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 12/53 (22%)
Query: 201 LKHGSMLVMRGYTQRDWIHSVPRRAK------------AESTRINLTFRHVLQ 241
L+ GS+L+M G + DW H +P RA + S R+++T R +++
Sbjct: 168 LEKGSLLLMSGTARYDWFHEIPFRAGDWVMNDGEEKWVSRSQRLSVTMRRIIE 220
>sp|B3N4V1|TOTM_DROER Protein Turandot M OS=Drosophila erecta GN=TotM PE=3 SV=1
Length = 131
Score = 32.7 bits (73), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 12 AKANPDDDDEKNQKKQRMVVDLGNGSEVIYFPRIIKMEDSWKFFDYLNNRIPW 64
K N +DDDE +KQR++ G+ S V R ++D KF+D + +PW
Sbjct: 19 GKVNAEDDDEFRTEKQRLLRVYGDSS-VDEATRYRNVDDLVKFYDKYSTLLPW 70
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.138 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,141,315
Number of Sequences: 539616
Number of extensions: 4327041
Number of successful extensions: 10103
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 10085
Number of HSP's gapped (non-prelim): 19
length of query: 241
length of database: 191,569,459
effective HSP length: 114
effective length of query: 127
effective length of database: 130,053,235
effective search space: 16516760845
effective search space used: 16516760845
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)