Query 026231
Match_columns 241
No_of_seqs 154 out of 1315
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 05:21:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026231.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026231hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15401 alpha-ketoglutarate-d 100.0 1.8E-37 3.8E-42 260.6 19.4 182 31-239 14-213 (213)
2 PF13532 2OG-FeII_Oxy_2: 2OG-F 100.0 2E-36 4.4E-41 251.9 14.1 178 38-237 1-194 (194)
3 TIGR00568 alkb DNA alkylation 100.0 1.8E-31 3.8E-36 217.9 16.3 156 43-221 2-169 (169)
4 COG3145 AlkB Alkylated DNA rep 100.0 5.6E-29 1.2E-33 205.5 15.7 175 38-234 16-194 (194)
5 KOG3200 Uncharacterized conser 99.9 2.6E-22 5.7E-27 160.7 12.0 180 35-239 10-214 (224)
6 KOG3959 2-Oxoglutarate- and ir 99.6 1E-16 2.2E-21 134.2 4.1 187 29-240 67-278 (306)
7 PF12933 FTO_NTD: FTO catalyti 99.6 2E-15 4.3E-20 127.4 10.1 175 43-239 20-251 (253)
8 KOG4176 Uncharacterized conser 99.5 1.4E-13 3E-18 122.3 13.3 174 38-240 129-305 (323)
9 PF03171 2OG-FeII_Oxy: 2OG-Fe( 97.9 1.6E-05 3.6E-10 58.6 4.2 84 127-238 1-96 (98)
10 KOG2731 DNA alkylation damage 97.8 1.8E-05 3.9E-10 70.8 4.1 76 128-222 217-292 (378)
11 PRK05467 Fe(II)-dependent oxyg 97.7 0.002 4.4E-08 55.1 14.5 159 39-237 2-175 (226)
12 smart00702 P4Hc Prolyl 4-hydro 97.3 0.025 5.3E-07 46.1 15.5 160 37-237 1-176 (178)
13 PF13640 2OG-FeII_Oxy_3: 2OG-F 96.3 0.0051 1.1E-07 45.2 4.0 86 130-236 1-97 (100)
14 PLN00052 prolyl 4-hydroxylase; 93.7 1.8 3.9E-05 38.9 12.6 105 26-149 43-152 (310)
15 TIGR01762 chlorin-enz chlorina 93.0 1.9 4.1E-05 38.3 11.7 41 195-239 207-247 (288)
16 PF13759 2OG-FeII_Oxy_5: Putat 91.8 1.1 2.3E-05 33.0 7.4 98 130-236 2-100 (101)
17 PF12851 Tet_JBP: Oxygenase do 90.8 0.88 1.9E-05 37.2 6.5 39 195-236 126-167 (171)
18 PF08007 Cupin_4: Cupin superf 90.7 0.95 2.1E-05 40.7 7.1 84 128-223 112-198 (319)
19 PF09859 Oxygenase-NA: Oxygena 88.9 6.8 0.00015 31.9 9.9 106 110-235 46-167 (173)
20 COG3128 PiuC Uncharacterized i 85.9 2.7 5.9E-05 35.0 6.1 92 131-237 85-178 (229)
21 TIGR02466 conserved hypothetic 85.2 12 0.00026 31.4 10.0 101 127-237 95-197 (201)
22 COG3491 PcbC Isopenicillin N s 77.9 15 0.00033 33.0 8.3 42 195-236 221-268 (322)
23 PLN02984 oxidoreductase, 2OG-F 75.9 14 0.00031 33.6 7.9 42 195-237 246-295 (341)
24 PLN03001 oxidoreductase, 2OG-F 75.6 7.7 0.00017 33.9 5.9 40 196-237 163-210 (262)
25 PLN02904 oxidoreductase 74.4 13 0.00028 34.0 7.2 82 128-237 208-302 (357)
26 PLN02216 protein SRG1 73.6 14 0.0003 33.8 7.2 82 128-237 210-305 (357)
27 PLN02947 oxidoreductase 71.7 17 0.00038 33.4 7.5 81 129-237 226-319 (374)
28 COG5285 Protein involved in bi 70.6 20 0.00044 31.9 7.2 39 196-239 192-230 (299)
29 PLN02515 naringenin,2-oxogluta 70.5 18 0.0004 33.0 7.3 84 128-237 195-291 (358)
30 PTZ00273 oxidase reductase; Pr 68.6 18 0.00039 32.4 6.7 39 196-237 226-272 (320)
31 PLN03002 oxidoreductase, 2OG-F 64.3 16 0.00034 33.0 5.5 40 195-237 234-281 (332)
32 PLN02997 flavonol synthase 62.9 27 0.00058 31.5 6.7 40 196-237 230-277 (325)
33 PLN02485 oxidoreductase 62.6 24 0.00052 31.7 6.4 41 195-237 236-284 (329)
34 PLN02704 flavonol synthase 61.0 23 0.00049 32.0 5.9 40 196-237 246-293 (335)
35 PLN02156 gibberellin 2-beta-di 59.0 46 0.001 30.1 7.6 43 195-237 227-275 (335)
36 PLN02912 oxidoreductase, 2OG-F 57.2 45 0.00098 30.3 7.3 83 127-237 196-291 (348)
37 PLN02393 leucoanthocyanidin di 55.8 40 0.00087 30.8 6.7 41 195-237 260-308 (362)
38 PLN02750 oxidoreductase, 2OG-F 55.5 59 0.0013 29.5 7.7 41 195-237 241-289 (345)
39 PLN02365 2-oxoglutarate-depend 54.1 39 0.00085 29.9 6.2 41 195-237 198-246 (300)
40 PLN02639 oxidoreductase, 2OG-F 53.0 57 0.0012 29.4 7.2 43 195-237 237-285 (337)
41 PLN02276 gibberellin 20-oxidas 52.8 62 0.0013 29.5 7.4 43 195-237 252-300 (361)
42 PLN00417 oxidoreductase, 2OG-F 52.0 54 0.0012 29.8 6.8 40 196-237 251-298 (348)
43 KOG0143 Iron/ascorbate family 48.8 77 0.0017 28.5 7.3 81 129-236 177-271 (322)
44 PLN02254 gibberellin 3-beta-di 48.1 63 0.0014 29.5 6.7 41 195-237 257-305 (358)
45 KOG1591 Prolyl 4-hydroxylase a 46.8 1.5E+02 0.0033 26.3 8.7 25 33-57 93-117 (289)
46 PLN02758 oxidoreductase, 2OG-F 46.5 73 0.0016 29.1 6.8 41 195-237 259-307 (361)
47 PLN02299 1-aminocyclopropane-1 45.9 53 0.0012 29.5 5.8 43 195-237 205-253 (321)
48 COG3751 EGL-9 Predicted prolin 45.3 83 0.0018 27.5 6.6 95 130-235 138-235 (252)
49 COG2850 Uncharacterized conser 44.4 1.4E+02 0.003 27.6 8.1 113 109-238 101-214 (383)
50 PF12088 DUF3565: Protein of u 42.5 19 0.0004 24.3 1.7 23 142-169 1-23 (61)
51 PLN03178 leucoanthocyanidin di 42.4 78 0.0017 28.9 6.4 41 195-237 257-305 (360)
52 PF13621 Cupin_8: Cupin-like d 40.7 27 0.00059 29.1 2.9 90 136-237 139-244 (251)
53 PRK10572 DNA-binding transcrip 39.6 93 0.002 26.9 6.2 67 123-216 16-86 (290)
54 KOG2107 Uncharacterized conser 37.2 65 0.0014 26.3 4.3 41 159-217 96-136 (179)
55 PF03079 ARD: ARD/ARD' family; 35.3 57 0.0012 26.3 3.8 40 161-218 97-136 (157)
56 PF05118 Asp_Arg_Hydrox: Aspar 34.2 1.2E+02 0.0025 24.3 5.5 81 125-237 77-158 (163)
57 TIGR03037 anthran_nbaC 3-hydro 28.0 3.3E+02 0.0071 22.1 7.7 61 131-218 30-91 (159)
58 COG3826 Uncharacterized protei 23.5 4.5E+02 0.0097 22.1 9.5 84 110-211 108-197 (236)
59 KOG2731 DNA alkylation damage 23.2 30 0.00064 31.7 0.2 48 126-175 313-363 (378)
60 PF08856 DUF1826: Protein of u 20.5 1.6E+02 0.0035 24.5 4.1 39 198-236 152-195 (196)
No 1
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional
Probab=100.00 E-value=1.8e-37 Score=260.59 Aligned_cols=182 Identities=21% Similarity=0.320 Sum_probs=146.6
Q ss_pred EeCCCCceEEEeCCCCCHHHHHHHHHHHHh---cCCCCCceeeecCeEEeeccee-----eeeCCCCccceeecCCC-CC
Q 026231 31 VDLGNGSEVIYFPRIIKMEDSWKFFDYLNN---RIPWNRPTIRVFGRSCLQPRDT-----CYVASEGVTQLIYSGYR-PH 101 (241)
Q Consensus 31 ~~l~~~~~~~~~~~fl~~~ea~~L~~~l~~---~~~w~~~~~~~~G~~~~~pR~~-----~~~~~~g~~~y~ysg~~-~~ 101 (241)
..+.+| +.++++|. .+++++|++.|++ ..+|++ +.++|+...++|++ .|+++.. .|.|++.. ..
T Consensus 14 ~~~~~g--~~~~~~~~-~~~~~~l~~~~~~~~~~~p~~~--~~~~gg~~msv~mt~~G~~~W~~d~~--~YrYs~~~~~~ 86 (213)
T PRK15401 14 EPLAPG--AVLLRGFA-LAAAEALLAAIEAVAAQAPFRH--MVTPGGYTMSVAMTNCGALGWVTDRR--GYRYSPIDPLT 86 (213)
T ss_pred eecCCC--cEEeCCCC-HHHHHHHHHHHHHHHhcCCccc--eecCCCCcceeEEeccccceEecCCC--CcccCCcCCCC
Confidence 446555 99999995 8899999999987 899988 56788888899999 8999863 49999875 56
Q ss_pred CCCCCCCch-HHHHHHHHHhh--cCCCCCceeeeeeecCCCCCcccccCCC-CccCCCCeEEEEEcCCceeeEEeeCCCC
Q 026231 102 PYSWDDFPP-LKDILDIVLKV--LPGSRFNSLLLNRYKGGNDYVGWHADDE-KLYGSTPEIASVSFGCERDFLLKIKPNR 177 (241)
Q Consensus 102 ~~~w~~~P~-L~~~~~~~~e~--~~g~~~n~~liN~Y~~G~d~i~~H~D~~-~~~g~~~~IasvSLG~~r~f~fr~~~~~ 177 (241)
..||+++|. |.++.+++... ..+..||+||||+|++|+ +|+||+|+. .. .+++|||||||++|+|.|++....
T Consensus 87 ~~pwp~~P~~l~~L~~~~~~~~~~~~~~p~a~LvN~Y~~G~-~mg~H~D~~E~~--~~~pI~SvSLG~~~~F~~~~~~~~ 163 (213)
T PRK15401 87 GKPWPAMPASFLALAQRAAAAAGFPGFQPDACLINRYAPGA-KLSLHQDKDERD--FRAPIVSVSLGLPAVFQFGGLKRS 163 (213)
T ss_pred CCCCCCchHHHHHHHHHHHHHcCCCCCCCCEEEEEeccCcC-ccccccCCCccc--CCCCEEEEeCCCCeEEEecccCCC
Confidence 789998885 66666655322 123489999999999998 999999964 33 356899999999999999875432
Q ss_pred CCCCchhhhhhhccCCccceEEEcCCCcEEEEccCccccccccccccCCCC-----CceEEEecccc
Q 026231 178 RTDDEPVSKRLKKKGNLDQHSFTLKHGSMLVMRGYTQRDWIHSVPRRAKAE-----STRINLTFRHV 239 (241)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~l~L~~gsllvM~g~~q~~w~H~Ip~~~~~~-----~~RISlTFR~~ 239 (241)
....+|.|++|||+||.|++|. |.|+|++.+... ..|||||||++
T Consensus 164 ----------------~~~~~l~L~~Gdllvm~G~sr~-~~HgVp~~~~~~~p~~g~~RINLTFR~~ 213 (213)
T PRK15401 164 ----------------DPLQRILLEHGDVVVWGGPSRL-RYHGILPLKAGEHPLTGECRINLTFRKA 213 (213)
T ss_pred ----------------CceEEEEeCCCCEEEECchHhh-eeccCCcCCCCcCCCCCCCeEEEEeEcC
Confidence 2367899999999999999987 559999976433 37999999975
No 2
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=100.00 E-value=2e-36 Score=251.93 Aligned_cols=178 Identities=34% Similarity=0.611 Sum_probs=129.1
Q ss_pred eEEEeCCCCCHHHHHHHHHHHHhcCCCCCceeeecCeEEeecce----eeeeCCCCccceeecCC-CCCCCCCCCCch-H
Q 026231 38 EVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQPRD----TCYVASEGVTQLIYSGY-RPHPYSWDDFPP-L 111 (241)
Q Consensus 38 ~~~~~~~fl~~~ea~~L~~~l~~~~~w~~~~~~~~G~~~~~pR~----~~~~~~~g~~~y~ysg~-~~~~~~w~~~P~-L 111 (241)
|++|+||||+++|+++|+++|.+..+|.+.+... ++.+..+|. ..|++.. . .|.|++. .....+|+++|. |
T Consensus 1 G~~~~~~fls~~e~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~-~y~y~~~~~~~~~~~~~~p~~l 77 (194)
T PF13532_consen 1 GLYYIPNFLSEEEAAELLNELRESAPFRQPTYPM-GKVYSLPRKLCGGLSWVGDG-P-SYRYSGKRPVRSKPWPPFPEWL 77 (194)
T ss_dssp -EEEETTSS-HHHHHHHHHHHHHHS--B-GCCCC-CCECCECCE-SSEEEEEECT----CCCTCC-EECCCEBSCCHHHH
T ss_pred CEEEECCCCCHHHHHHHHHHHHhhCCCcCCeEcC-CCEEccceecceeeEEECCC-C-CeEcCCccccCCCCCCCccHHH
Confidence 4899999999999999999999889998876654 777766665 3466533 3 3889886 455667877664 7
Q ss_pred HHHHHHHHhhc---CCCCCceeeeeeecCCCCCcccccCCCCccCCCCeEEEEEcCCceeeEEeeCCCCCCCCchhhhhh
Q 026231 112 KDILDIVLKVL---PGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPNRRTDDEPVSKRL 188 (241)
Q Consensus 112 ~~~~~~~~e~~---~g~~~n~~liN~Y~~G~d~i~~H~D~~~~~g~~~~IasvSLG~~r~f~fr~~~~~~~~~~~~~~~~ 188 (241)
.++++++.+.. .+..||+||||+|.+|+ +|++|+|++.. +.+++||+||||++|.|.|+.....
T Consensus 78 ~~~~~~~~~~~~~~~~~~~n~~liN~Y~~g~-~i~~H~D~~~~-~~~~~I~slSLG~~~~~~f~~~~~~----------- 144 (194)
T PF13532_consen 78 SRLLERLVEATGIPPGWRPNQCLINYYRDGS-GIGPHSDDEEY-GFGPPIASLSLGSSRVFRFRNKSDD----------- 144 (194)
T ss_dssp HHHHHHHHHHHT-SHSS--SEEEEEEESSTT--EEEE---TTC--CCSEEEEEEEES-EEEEEEECGGT-----------
T ss_pred HHHHHHHHHHhccccCCCCCEEEEEecCCCC-CcCCCCCcccc-cCCCcEEEEEEccCceEEEeeccCC-----------
Confidence 77777775432 35789999999999999 99999999954 6677999999999999999975432
Q ss_pred hccCCccceEEEcCCCcEEEEccCccccccccccccCC-------CCCceEEEecc
Q 026231 189 KKKGNLDQHSFTLKHGSMLVMRGYTQRDWIHSVPRRAK-------AESTRINLTFR 237 (241)
Q Consensus 189 ~~~~~~~~~~l~L~~gsllvM~g~~q~~w~H~Ip~~~~-------~~~~RISlTFR 237 (241)
...+.+.|++|||+||.|++|+.| |+|++... ..+.|||||||
T Consensus 145 -----~~~~~~~L~~gsl~vm~g~~r~~~-H~I~~~~~~~~~~~~~~~~RislTfR 194 (194)
T PF13532_consen 145 -----DEPIEVPLPPGSLLVMSGEARYDW-HGIPPVKKDTHPSHYVRGRRISLTFR 194 (194)
T ss_dssp -----S-EEEEEE-TTEEEEEETTHHHHE-EEE-S-SCEEEESTEE-S-EEEEEEE
T ss_pred -----CccEEEEcCCCCEEEeChHHhhhe-eEcccccCCccccccCCCCEEEEEeC
Confidence 357899999999999999999999 99999865 46799999998
No 3
>TIGR00568 alkb DNA alkylation damage repair protein AlkB. Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).
Probab=99.98 E-value=1.8e-31 Score=217.93 Aligned_cols=156 Identities=21% Similarity=0.330 Sum_probs=128.5
Q ss_pred CCCCCHHHHHHHHHHHHh---cCCCCCceeeecCeEEeecceee----eeCCCCccceeecCCCC-CCCCCCCCc-hHHH
Q 026231 43 PRIIKMEDSWKFFDYLNN---RIPWNRPTIRVFGRSCLQPRDTC----YVASEGVTQLIYSGYRP-HPYSWDDFP-PLKD 113 (241)
Q Consensus 43 ~~fl~~~ea~~L~~~l~~---~~~w~~~~~~~~G~~~~~pR~~~----~~~~~g~~~y~ysg~~~-~~~~w~~~P-~L~~ 113 (241)
.+++..+++.+|.+.+++ ..+|++ .+.++|+.+.+||+++ |+++ |.. |.|++..+ ...+|+++| .|..
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~~w~~-~~~~~gk~~~~pr~~~~~l~W~~~-g~~-Y~ys~~~~~~~~~~p~~P~~L~~ 78 (169)
T TIGR00568 2 KRYFAFNAQEQLIRDINDVASQDPFRQ-YVTPGGYTMSVAMTNLGKLGWTTH-GQG-YLYSPKDPQTNKPWPAMPQDLGD 78 (169)
T ss_pred CCccChHHHHHHHHHHHHHhhcCCCcC-eEecCCeEeeehhhhcccceEEcC-CCc-ccCCCcccCCCCCCCCCCHHHHH
Confidence 578889998899987774 579999 5899999999999996 9998 665 99999876 456777666 4777
Q ss_pred HHHHHHhhcCC---CCCceeeeeeecCCCCCcccccCCCCccCCCCeEEEEEcCCceeeEEeeCCCCCCCCchhhhhhhc
Q 026231 114 ILDIVLKVLPG---SRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPNRRTDDEPVSKRLKK 190 (241)
Q Consensus 114 ~~~~~~e~~~g---~~~n~~liN~Y~~G~d~i~~H~D~~~~~g~~~~IasvSLG~~r~f~fr~~~~~~~~~~~~~~~~~~ 190 (241)
+.+++. ..++ ..||+||||+|++| |+||||+|. ..++.+++|||||||++|+|.|+++..+
T Consensus 79 L~~~v~-~~~g~~~~~~n~~LvN~Y~~G-d~mg~H~D~-~e~~~~~pI~SvSLG~~r~F~~~~~~~~------------- 142 (169)
T TIGR00568 79 LCERVA-TAAGFPDFQPDACLVNRYAPG-ATLSLHQDR-DEPDLRAPLLSVSLGLPAIFLIGGLKRN------------- 142 (169)
T ss_pred HHHHHH-HHhCCCCCCCCEEEEEeecCC-Ccccccccc-ccccCCCCEEEEeCCCCEEEEecCCcCC-------------
Confidence 766653 3334 48999999999999 599999995 5677788999999999999999876432
Q ss_pred cCCccceEEEcCCCcEEEEccCccccccccc
Q 026231 191 KGNLDQHSFTLKHGSMLVMRGYTQRDWIHSV 221 (241)
Q Consensus 191 ~~~~~~~~l~L~~gsllvM~g~~q~~w~H~I 221 (241)
....+|.|++||++||+|++|.. .|+|
T Consensus 143 ---~~~~~l~L~sGsllvM~G~sR~~-~Hgv 169 (169)
T TIGR00568 143 ---DPPKRLRLHSGDVVIMGGESRLA-FHGV 169 (169)
T ss_pred ---CceEEEEeCCCCEEEECCchhcc-ccCC
Confidence 23678999999999999999984 6886
No 4
>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair]
Probab=99.96 E-value=5.6e-29 Score=205.47 Aligned_cols=175 Identities=27% Similarity=0.458 Sum_probs=135.6
Q ss_pred eEEEeCCCCCHHHHHHHH---HHHHhcCCCCCceeeecCeEEeecceeeeeCCCCccceeecCCCCCC-CCCCCCchHHH
Q 026231 38 EVIYFPRIIKMEDSWKFF---DYLNNRIPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHP-YSWDDFPPLKD 113 (241)
Q Consensus 38 ~~~~~~~fl~~~ea~~L~---~~l~~~~~w~~~~~~~~G~~~~~pR~~~~~~~~g~~~y~ysg~~~~~-~~w~~~P~L~~ 113 (241)
++.+.++|+ -.++.+|+ ..+..+.||.+..++.+|+.++++|..+|+++ .. +|.|++..+.+ .+|+.+|.+..
T Consensus 16 G~~~~~~~~-~~~~~~l~~~l~~~~~~~P~~~~~~~~~g~~~sV~r~~~W~~d-~~-gy~y~~~~p~~~~p~p~l~~~~~ 92 (194)
T COG3145 16 GAVILPGFL-LLTQGALVAALLFLLSQAPWFRPRRTPYGKPMSVPRLLGWVTD-RR-GYRYSLRSPLTGKPWPPLLALFH 92 (194)
T ss_pred CeEEEeccc-ccchHHHHHHHHHhcccCcccceeecCCCcEeeeeeccceecc-cc-cccccccccCCCCCCCccHHHHH
Confidence 477788887 33333343 44456889999999999999999999999987 33 48998877654 46654444333
Q ss_pred HHHHHHhhcCCCCCceeeeeeecCCCCCcccccCCCCccCCCCeEEEEEcCCceeeEEeeCCCCCCCCchhhhhhhccCC
Q 026231 114 ILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPNRRTDDEPVSKRLKKKGN 193 (241)
Q Consensus 114 ~~~~~~e~~~g~~~n~~liN~Y~~G~d~i~~H~D~~~~~g~~~~IasvSLG~~r~f~fr~~~~~~~~~~~~~~~~~~~~~ 193 (241)
.+.. ...++...+++||+|+|++|+ +|+||.|.+..... ++|||||||++|.|.|+++...
T Consensus 93 ~~~~-~~g~~~~~~ea~Lvn~Y~pGd-~ig~HqD~~e~~~~-~~v~slSLg~~~~F~~~~~~r~---------------- 153 (194)
T COG3145 93 DLFG-AAGYPFEGPEAVLVNRYRPGA-SIGWHQDKDEEDDR-PPVASLSLGAPCIFRLRGRRRR---------------- 153 (194)
T ss_pred HHHH-HhcCCCCChhheeEEeccCCC-ccccccccccccCC-CceEEEecCCCeEEEeccccCC----------------
Confidence 2222 113344566779999999995 99999999887554 7899999999999999986532
Q ss_pred ccceEEEcCCCcEEEEccCccccccccccccCCCCCceEEE
Q 026231 194 LDQHSFTLKHGSMLVMRGYTQRDWIHSVPRRAKAESTRINL 234 (241)
Q Consensus 194 ~~~~~l~L~~gsllvM~g~~q~~w~H~Ip~~~~~~~~RISl 234 (241)
....++.|+|||++||.|++|..|.|.||++......||||
T Consensus 154 ~~~~~~~L~~Gdvvvm~G~~r~~~~h~~p~~~~~~~~Rinl 194 (194)
T COG3145 154 GPGLRLRLEHGDVVVMGGPSRLAWHHIIPKTSRLTGQRINL 194 (194)
T ss_pred CCceeEEecCCCEEEecCCccccccccccccccCCcccccC
Confidence 35778999999999999999999999999987777788885
No 5
>KOG3200 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.88 E-value=2.6e-22 Score=160.75 Aligned_cols=180 Identities=23% Similarity=0.321 Sum_probs=129.8
Q ss_pred CCceEEEeCCCCCHHHHHHHHHHHHh--cCCCCCceeeecCeEEeecceeeeeCCCCccceeecCCCCCCCCCCCCchHH
Q 026231 35 NGSEVIYFPRIIKMEDSWKFFDYLNN--RIPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLK 112 (241)
Q Consensus 35 ~~~~~~~~~~fl~~~ea~~L~~~l~~--~~~w~~~~~~~~G~~~~~pR~~~~~~~~g~~~y~ysg~~~~~~~w~~~P~L~ 112 (241)
.-+.+.|||+||+++|++.++..+.. ...|++.. -.|++.|.|-.+ -.|.. +...+ |||.
T Consensus 10 ~~pt~~YIPnfIt~EEe~~~lshIe~ap~pkW~~L~---------NRRLqNyGGvvh-----~~gli--peelP--~wLq 71 (224)
T KOG3200|consen 10 SAPTMIYIPNFITEEEENLYLSHIENAPQPKWRVLA---------NRRLQNYGGVVH-----KTGLI--PEELP--PWLQ 71 (224)
T ss_pred ccceEEEcCCccChHHHHHHHHHHhcCCCchhHHHH---------hhhhhhcCCccc-----cCCcC--ccccC--HHHH
Confidence 34478999999999999999998753 24687642 125555544321 12332 22232 5888
Q ss_pred HHHHHHHh-hcCCCCCceeeeeeecCCCCCcccccCCCCccCCCCeEEEEEcCCceeeEEeeCCCCCCCCchhhhhhhcc
Q 026231 113 DILDIVLK-VLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPNRRTDDEPVSKRLKKK 191 (241)
Q Consensus 113 ~~~~~~~e-~~~g~~~n~~liN~Y~~G~d~i~~H~D~~~~~g~~~~IasvSLG~~r~f~fr~~~~~~~~~~~~~~~~~~~ 191 (241)
.+++.+.. ++++...|++|||+|.+|+ +|.+|.|.+.+ .++|++||||+.+++.|......+.++...+++ +
T Consensus 72 ~~v~kinnlglF~s~~NHVLVNeY~pgq-GImPHtDGPaf---~piVstiSlGsh~vldf~~p~r~e~~d~te~~d---q 144 (224)
T KOG3200|consen 72 YYVDKINNLGLFKSPANHVLVNEYLPGQ-GIMPHTDGPAF---HPIVSTISLGSHTVLDFYDPVRQEVNDGTESKD---Q 144 (224)
T ss_pred HHHHHhhcccccCCCcceeEeecccCCC-CcCcCCCCCcc---cceEEEEecCCceEEecccccccccCCccccCC---C
Confidence 88777642 3455688999999999999 99999999987 578999999999999997643333222111111 1
Q ss_pred CCccceEEEcCCCcEEEEccCccccccccccccCC----------------------CCCceEEEecccc
Q 026231 192 GNLDQHSFTLKHGSMLVMRGYTQRDWIHSVPRRAK----------------------AESTRINLTFRHV 239 (241)
Q Consensus 192 ~~~~~~~l~L~~gsllvM~g~~q~~w~H~Ip~~~~----------------------~~~~RISlTFR~~ 239 (241)
-....+++.|++.|++|+.+.+..++.|+|..... .++.|||||.|.+
T Consensus 145 p~R~~fsllleprslLilkd~aYtd~LHgIs~s~~d~l~~~~sna~ac~s~k~Gd~lvr~tRvSLTiR~V 214 (224)
T KOG3200|consen 145 PLRYLFSLLLEPRSLLILKDDAYTDFLHGISDSPTDCLNQVVSNALACSSRKDGDKLVRQTRVSLTIRLV 214 (224)
T ss_pred CccceeeeeeccceEEEEcCcHHHHHHhhcccChHHHHHHHhhhhhhccccCCcceeeecceeEEEEecc
Confidence 12346789999999999999999999999976531 4789999999976
No 6
>KOG3959 consensus 2-Oxoglutarate- and iron-dependent dioxygenase-related proteins [General function prediction only]
Probab=99.64 E-value=1e-16 Score=134.25 Aligned_cols=187 Identities=16% Similarity=0.230 Sum_probs=119.6
Q ss_pred eEEeCCCCceEEEeCCCCCHHHHHHHHHHHHhcCCCCCc----eeeecCeEEeecceeeeeCCCCccceeecCCCCCCCC
Q 026231 29 MVVDLGNGSEVIYFPRIIKMEDSWKFFDYLNNRIPWNRP----TIRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYS 104 (241)
Q Consensus 29 ~~~~l~~~~~~~~~~~fl~~~ea~~L~~~l~~~~~w~~~----~~~~~G~~~~~pR~~~~~~~~g~~~y~ysg~~~~~~~ 104 (241)
+.+++| ++.+|.||||.+|+.+|++.| +..||.+. +.|-||.+++..++. .....
T Consensus 67 ~~~p~p---G~~lie~Fls~~Eea~l~~~~-D~~pW~~SQSGRRKQdyGPKvNFkk~K-----------------lkt~~ 125 (306)
T KOG3959|consen 67 GSIPIP---GLTLIENFLSESEEAKLLNMI-DTVPWAQSQSGRRKQDYGPKVNFKKKK-----------------LKTDT 125 (306)
T ss_pred CccccC---CeeehhhhhccchHhHHHHHh-ccCchhhhcccccccccCCccchhhhh-----------------hccCc
Confidence 345565 599999999999999999975 89999875 345566555444332 22222
Q ss_pred CCCCchHHH-HHHHHHhhcCC----CCCceeeeeeecCCCCCcccccCCCCccCCCCeEEEEEcCCceeeEEeeCCCC--
Q 026231 105 WDDFPPLKD-ILDIVLKVLPG----SRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPNR-- 177 (241)
Q Consensus 105 w~~~P~L~~-~~~~~~e~~~g----~~~n~~liN~Y~~G~d~i~~H~D~~~~~g~~~~IasvSLG~~r~f~fr~~~~~-- 177 (241)
|..+|...+ +++++ +.++. .+|.+|-+.|-+.-.+.|.+|.|+.+.+|+. ++++++-..-++.+-++.-.
T Consensus 126 F~G~P~~~~~v~rrm-~~yp~l~gfqp~EqCnLeYep~kgsaIdpH~DD~WiWGeR--lv~~n~l~d~vl~lc~~e~~~s 202 (306)
T KOG3959|consen 126 FVGMPEYADMVLRRM-SEYPVLKGFQPFEQCNLEYEPVKGSAIDPHQDDMWIWGER--LVRSNRLFDFVLKLCSKECLAS 202 (306)
T ss_pred ccCCchHHHHHHHHh-hccchhhccCcHHHcCcccccccCCccCccccchhhhhhh--eeehhhccHHHHHhhhhhhhcc
Confidence 333455433 33433 23322 4678887665554445999999999999985 66666544444444321110
Q ss_pred -C----CCCchhh----hhh-----hccCCccceEEEcCCCcEEEEccCccccccccccccCCCCCceEEEeccccc
Q 026231 178 -R----TDDEPVS----KRL-----KKKGNLDQHSFTLKHGSMLVMRGYTQRDWIHSVPRRAKAESTRINLTFRHVL 240 (241)
Q Consensus 178 -~----~~~~~~~----~~~-----~~~~~~~~~~l~L~~gsllvM~g~~q~~w~H~Ip~~~~~~~~RISlTFR~~~ 240 (241)
. .+-+.++ ..+ -..-+.....|++++.||+||.|++++.|+|+|-+. +.+++||.+|||...
T Consensus 203 g~~nL~~~~s~~~e~l~~~li~~s~~~l~~~~~~~ipmP~rSLlvl~g~aRyqwkH~vlr~-hi~~RRvcvt~RE~~ 278 (306)
T KOG3959|consen 203 GIINLNTNFSESNEFLSINLINGSVMTLNKSFLCYIPMPHRSLLVLAGEARYQWKHGVLRH-HIRGRRVCVTMREAA 278 (306)
T ss_pred ceeeeccCccccccccchhhcccchhhhccceEEEeecCcceeEEeechhHhhHHHHHHHH-hhhhceeeeeHHhhh
Confidence 0 0000000 000 001234456799999999999999999999999875 489999999999753
No 7
>PF12933 FTO_NTD: FTO catalytic domain; InterPro: IPR024367 Alpha-ketoglutarate-dependent dioxygenase FTO, also known as Fat mass and obesity-associated protein, is a nucleus protein which belongs to the FTO family. This enzyme is a dioxygenase that repairs alkylated DNA and RNA by oxidative demethylation []. FTO activity is highest towards single-stranded RNA containing 3-methyluracil, followed by single-stranded DNA containing 3-methylthymine. FTO has low demethylase activity towards single-stranded DNA containing 1-methyladenine or 3-methylcytosine []. FTO has no activity towards 1-methylguanine. It has no detectable activity towards double-stranded DNA. FTO requires molecular oxygen, alpha-ketoglutarate and iron. FTO contributes to the regulation of the global metabolic rate, energy expenditure and energy homeostasis. It contributes to the regulation of body size and body fat accumulation as well []. This domain is the catalytic AlkB-like domain from the FTO protein []. This domain catalyses a demethylase activity with a preference for 3-methylthymidine.; PDB: 3LFM_A.
Probab=99.62 E-value=2e-15 Score=127.36 Aligned_cols=175 Identities=24% Similarity=0.306 Sum_probs=100.2
Q ss_pred CCCCCHHH---HHHHHHHHHhcCCCCCceeeecCeEEeecceeeeeCCCCccceeecCCCCCCCCCCCC--------chH
Q 026231 43 PRIIKMED---SWKFFDYLNNRIPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDF--------PPL 111 (241)
Q Consensus 43 ~~fl~~~e---a~~L~~~l~~~~~w~~~~~~~~G~~~~~pR~~~~~~~~g~~~y~ysg~~~~~~~w~~~--------P~L 111 (241)
++-|+++. .++=|..|++...|.++.+++.||....+-.....|++|++ |+|-+.+..+.||+.. |.+
T Consensus 20 ~~~lP~~lH~~vq~Af~tL~~~Gcf~~Dlvr~~~k~~~T~VsR~L~G~pG~T-YkYl~~RLFa~PW~~~~~~~~~~~~~i 98 (253)
T PF12933_consen 20 AESLPEELHEEVQEAFDTLRKHGCFFRDLVRIGGKDSFTPVSRTLLGEPGCT-YKYLNTRLFAVPWPDEGSEIKYQSPEI 98 (253)
T ss_dssp GGGS-HHHHHHHHHHHHHHHHTT--B--EE-GGG--EE-SSEEEEEESTTBE-EEETTEEEE-EE-------------HH
T ss_pred cccCCHHHHHHHHHHHHHHHhcCchHHHHHhhCCccccceeehhhcCCCCce-eEecceeEEeccCCCCCcccccCChhH
Confidence 34455443 34456667888999999999999988888888899999998 9999999999999842 333
Q ss_pred HHHHHHHHh--------------h----------cCCCCCceeeeeeecC----------------CCCCcccccCCCCc
Q 026231 112 KDILDIVLK--------------V----------LPGSRFNSLLLNRYKG----------------GNDYVGWHADDEKL 151 (241)
Q Consensus 112 ~~~~~~~~e--------------~----------~~g~~~n~~liN~Y~~----------------G~d~i~~H~D~~~~ 151 (241)
...++.+.+ + .....||.+|||++.+ |+.+|+||+|. .
T Consensus 99 ~~a~~al~~LN~~L~~~~~~~l~~~~~~~~~~~~~~~~~fNvTLlN~MdP~~~~~~~LK~Ep~fgmGKmaVsWH~De--n 176 (253)
T PF12933_consen 99 RSACKALGKLNDYLCSRAVQALEGRRLARVEEDEVGSCEFNVTLLNYMDPSSQAMPDLKEEPYFGMGKMAVSWHHDE--N 176 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---------------EEEEEEE-S--S-SSS--B-SSS---BEEEEEE-----S
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccceeeehhhhhccCcccccccccccccccCCcceeeeecccc--c
Confidence 333322110 0 0113699999999776 67789999997 4
Q ss_pred cCCCCeEEEEEcCCce----e--eEEeeCCCCCCCCchhhhhhhccCCccceEEEcCCCcEEEEccCccccccccccccC
Q 026231 152 YGSTPEIASVSFGCER----D--FLLKIKPNRRTDDEPVSKRLKKKGNLDQHSFTLKHGSMLVMRGYTQRDWIHSVPRRA 225 (241)
Q Consensus 152 ~g~~~~IasvSLG~~r----~--f~fr~~~~~~~~~~~~~~~~~~~~~~~~~~l~L~~gsllvM~g~~q~~w~H~Ip~~~ 225 (241)
+.+.++||+.|.-++. . .-|| ... -..+...++|++||+|.|-+..+.+++|+|-.
T Consensus 177 L~~~StVAVY~~s~~~~~~~~W~VgLk-a~D---------------~~tP~L~vPL~sgd~Y~Mldd~N~tHqH~Vla-- 238 (253)
T PF12933_consen 177 LVERSTVAVYSYSCEEPEPADWHVGLK-AWD---------------IETPGLAVPLRSGDCYYMLDDFNATHQHCVLA-- 238 (253)
T ss_dssp B-TT--EEEEEEE-----TTSEEEEEE-TT-----------------SS-EEEEEE-TT-EEEE-TTHHHHEEEEEE---
T ss_pred cccccceEEEEecCCCCCCCceEEEEe-ecC---------------CCCCeeEEeccCCCeEEEccccchhhHHHHhc--
Confidence 5678899999976531 1 1122 111 02457889999999999999999999999998
Q ss_pred CCCCceEEEecccc
Q 026231 226 KAESTRINLTFRHV 239 (241)
Q Consensus 226 ~~~~~RISlTFR~~ 239 (241)
....|+|-|-|..
T Consensus 239 -G~~~RfSSTHRVA 251 (253)
T PF12933_consen 239 -GSSARFSSTHRVA 251 (253)
T ss_dssp --SS-EEEEEEE-B
T ss_pred -CCCccccccceee
Confidence 7888999998853
No 8
>KOG4176 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.53 E-value=1.4e-13 Score=122.35 Aligned_cols=174 Identities=20% Similarity=0.248 Sum_probs=120.2
Q ss_pred eEEEeCCCCCHHHHHHHHHHHHhcCCCCCceeeecCeEEeecceeeeeCCCCccceeecCCCCCC-CCCCCCch-HHHHH
Q 026231 38 EVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHP-YSWDDFPP-LKDIL 115 (241)
Q Consensus 38 ~~~~~~~fl~~~ea~~L~~~l~~~~~w~~~~~~~~G~~~~~pR~~~~~~~~g~~~y~ysg~~~~~-~~w~~~P~-L~~~~ 115 (241)
.+.++++|++..++.-|...+.++ .|.. ++.|++ |.+..+| ++ +.|....... .+-..+|. +..++
T Consensus 129 e~~~~~d~V~el~e~~l~~~~~~e-~~~~---~~~gk~----R~~iq~G---~~-f~y~~~~~d~~~~~~piPs~~~~ii 196 (323)
T KOG4176|consen 129 ELSLIVDFVTELEEKGLIGALVDE-TFTY---QESGKH----REVIQLG---YP-FDYRTNNVDESKPVDPIPSLFKSII 196 (323)
T ss_pred hceehhhhhhhhHHhhhhcccccc-ccee---eccccc----eeeeecC---ce-eccCCCcccccCccCCCchHHHHHH
Confidence 599999999999988777766433 2332 334443 3344444 22 4444322211 11112454 56666
Q ss_pred HHHHhh-cCCCCCceeeeeeecCCCCCcccccCCCCccCCCCeEEEEEcCCceeeEEeeCCCCCCCCchhhhhhhccCCc
Q 026231 116 DIVLKV-LPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPNRRTDDEPVSKRLKKKGNL 194 (241)
Q Consensus 116 ~~~~e~-~~g~~~n~~liN~Y~~G~d~i~~H~D~~~~~g~~~~IasvSLG~~r~f~fr~~~~~~~~~~~~~~~~~~~~~~ 194 (241)
++++.. +....+|+|+||.|.+|. +|.+|.|.+.+ ++ +|++|||-++++|.|++....+..+.. .
T Consensus 197 ~rlv~~~~ip~~pd~~~iN~Ye~G~-~i~ph~~~~~F-~~--Pi~slS~lSe~~m~Fg~~~~~~~~~~~----------~ 262 (323)
T KOG4176|consen 197 DRLVSWRVIPERPDQCTINFYEPGD-GIPPHIDHSAF-LD--PISSLSFLSECTMEFGHGLLSDNIGNF----------R 262 (323)
T ss_pred HHhhhhccCCCCCCeeEEEeeCCCC-CCCCCCChHHh-cC--ceEEEEeecceeEEecccccccCcccc----------c
Confidence 666442 223369999999999998 99999976655 33 699999999999999986553222211 2
Q ss_pred cceEEEcCCCcEEEEccCccccccccccccCCCCCceEEEeccccc
Q 026231 195 DQHSFTLKHGSMLVMRGYTQRDWIHSVPRRAKAESTRINLTFRHVL 240 (241)
Q Consensus 195 ~~~~l~L~~gsllvM~g~~q~~w~H~Ip~~~~~~~~RISlTFR~~~ 240 (241)
...++++..|++++|.|..-.-=.|+++. +.+.|||||||++.
T Consensus 263 g~~s~p~~~g~~lvi~~~~ad~~~~~~~~---~~~kRisitfrki~ 305 (323)
T KOG4176|consen 263 GSLSLPLRYGSVLVIRGRSADVAPHCIRP---SRNKRISITFRKIR 305 (323)
T ss_pred cccccccccCeEEEeCCCcccccccccCC---CCCceEEEEEEEec
Confidence 25779999999999999988888999998 88999999999874
No 9
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity (1.14.11.2 from EC) catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site []. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB. ; GO: 0016491 oxidoreductase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 3ON7_D 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=97.88 E-value=1.6e-05 Score=58.55 Aligned_cols=84 Identities=25% Similarity=0.335 Sum_probs=47.0
Q ss_pred Cceeeeeeec---CCCCCcccccCCCCccCCCCeEEEEEcC-CceeeEEeeCCCCCCCCchhhhhhhccCCccceE----
Q 026231 127 FNSLLLNRYK---GGNDYVGWHADDEKLYGSTPEIASVSFG-CERDFLLKIKPNRRTDDEPVSKRLKKKGNLDQHS---- 198 (241)
Q Consensus 127 ~n~~liN~Y~---~G~d~i~~H~D~~~~~g~~~~IasvSLG-~~r~f~fr~~~~~~~~~~~~~~~~~~~~~~~~~~---- 198 (241)
++.+.+|+|. .+. ++++|.|.+. .+++|.+. ...-+.|.... ..+.
T Consensus 1 ~~~~~~~~Y~~~~~~~-~~~~H~D~~~------~~~Til~~~~~~gL~~~~~~-------------------~~~~v~~~ 54 (98)
T PF03171_consen 1 PSQLRLNRYPPPENGV-GIGPHTDDED------GLLTILFQDEVGGLQVRDDG-------------------EWVDVPPP 54 (98)
T ss_dssp --EEEEEEE-SCCGCE-EEEEEEES--------SSEEEEEETSTS-EEEEETT-------------------EEEE----
T ss_pred CCEEEEEECCCcccCC-ceeCCCcCCC------CeEEEEecccchheeccccc-------------------cccCccCc
Confidence 3678999999 666 9999999851 23444443 55667776542 1233
Q ss_pred ---EEcCCCc-EEEEccCccccccccccccCCCCCceEEEeccc
Q 026231 199 ---FTLKHGS-MLVMRGYTQRDWIHSVPRRAKAESTRINLTFRH 238 (241)
Q Consensus 199 ---l~L~~gs-llvM~g~~q~~w~H~Ip~~~~~~~~RISlTFR~ 238 (241)
+.+.-|| |.+|++.....+.|+|.... .+.|+|+||+.
T Consensus 55 ~~~~~v~~G~~l~~~t~g~~~~~~HrV~~~~--~~~R~s~~~f~ 96 (98)
T PF03171_consen 55 PGGFIVNFGDALEILTNGRYPATLHRVVPPT--EGERYSLTFFL 96 (98)
T ss_dssp TTCEEEEEBHHHHHHTTTSS----EEEE--S--TS-EEEEEEEE
T ss_pred cceeeeeceeeeecccCCccCCceeeeEcCC--CCCEEEEEEEE
Confidence 4444444 33445557888999998842 69999999974
No 10
>KOG2731 consensus DNA alkylation damage repair protein [RNA processing and modification]
Probab=97.82 E-value=1.8e-05 Score=70.79 Aligned_cols=76 Identities=22% Similarity=0.337 Sum_probs=61.1
Q ss_pred ceeeeeeecCCCCCcccccCCCCccCCCCeEEEEEcCCceeeEEeeCCCCCCCCchhhhhhhccCCccceEEEcCCCcEE
Q 026231 128 NSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPNRRTDDEPVSKRLKKKGNLDQHSFTLKHGSML 207 (241)
Q Consensus 128 n~~liN~Y~~G~d~i~~H~D~~~~~g~~~~IasvSLG~~r~f~fr~~~~~~~~~~~~~~~~~~~~~~~~~~l~L~~gsll 207 (241)
+.+|+|||..+. .++.|.|.-. ++...++.+.|||..+.|.+......+ ....+.|..||.+
T Consensus 217 ~Gli~nYlsi~~-tl~ih~d~re-ld~~~pf~s~s~g~~ai~lLg~m~l~e----------------~p~p~~lrsGdv~ 278 (378)
T KOG2731|consen 217 PGLIKNYLSIDD-TLGIHLDCRE-LDLSKPFYSPSLGQGAILLLGMMCLGE----------------NPDPMTLRSGDVV 278 (378)
T ss_pred CcceeeecccCc-EEEEEeehhh-cccCCccccccccccceeeecccccCC----------------CCCccccccCceE
Confidence 447999999988 8999999743 455667999999999999998765421 2345889999999
Q ss_pred EEccCcccccccccc
Q 026231 208 VMRGYTQRDWIHSVP 222 (241)
Q Consensus 208 vM~g~~q~~w~H~Ip 222 (241)
+|.|..|.. .|+||
T Consensus 279 im~Gfsrlv-~haIp 292 (378)
T KOG2731|consen 279 IMDGFSRLV-EHAIP 292 (378)
T ss_pred eecchHHHH-hhccc
Confidence 999966555 89999
No 11
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=97.69 E-value=0.002 Score=55.11 Aligned_cols=159 Identities=18% Similarity=0.320 Sum_probs=82.0
Q ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCCCceeeecCeEEeecceeeeeCCCCccceeecCCCCCCCCCCCCchHHHHHHHH
Q 026231 39 VIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIV 118 (241)
Q Consensus 39 ~~~~~~fl~~~ea~~L~~~l~~~~~w~~~~~~~~G~~~~~pR~~~~~~~~g~~~y~ysg~~~~~~~w~~~P~L~~~~~~~ 118 (241)
+..||++|+++|...|.+.+ +...|..-... ..+++. .++- +... + ...|....+-+.+
T Consensus 2 i~~I~~vLs~eec~~~~~~l-e~~~~~dg~~t-----------aG~~~~----~vKn-N~ql---~-~d~~~a~~l~~~i 60 (226)
T PRK05467 2 LLHIPDVLSPEEVAQIRELL-DAAEWVDGRVT-----------AGAQAA----QVKN-NQQL---P-EDSPLARELGNLI 60 (226)
T ss_pred eeeecccCCHHHHHHHHHHH-HhcCCccCCcC-----------cCccch----hccc-cccc---C-CCCHHHHHHHHHH
Confidence 46789999999999999986 56788753211 111111 0111 1111 1 1112111221222
Q ss_pred Hhhc----------CCCCCceeeeeeecCCCCCcccccCCCCccCCC--CeEEEEEcCCceeeEEe--eCCCCC-CCCch
Q 026231 119 LKVL----------PGSRFNSLLLNRYKGGNDYVGWHADDEKLYGST--PEIASVSFGCERDFLLK--IKPNRR-TDDEP 183 (241)
Q Consensus 119 ~e~~----------~g~~~n~~liN~Y~~G~d~i~~H~D~~~~~g~~--~~IasvSLG~~r~f~fr--~~~~~~-~~~~~ 183 (241)
...+ ......-.+++.|..|. .-++|.|......++ ..+- +.++|. -+...+ .+|+-
T Consensus 61 ~~~L~~~~l~~sa~lp~~i~~~~f~rY~~G~-~y~~H~D~~~~~~~~~~~~~r-------s~lS~~lyLnd~~~yeGGEl 132 (226)
T PRK05467 61 LDALTRNPLFFSAALPRKIHPPLFNRYEGGM-SYGFHVDNAVRSLPGTGGRVR-------TDLSATLFLSDPDDYDGGEL 132 (226)
T ss_pred HHHHhcCchhhhhccccccccceEEEECCCC-ccCccccCCcccCCCCCccee-------EEEEEEEEeCCCCCCcCCce
Confidence 1111 01112245789999998 999999996542111 0110 111111 111110 11111
Q ss_pred hhhhhhccCCccceEEEcCCCcEEEEccCccccccccccccCCCCCceEEEecc
Q 026231 184 VSKRLKKKGNLDQHSFTLKHGSMLVMRGYTQRDWIHSVPRRAKAESTRINLTFR 237 (241)
Q Consensus 184 ~~~~~~~~~~~~~~~l~L~~gsllvM~g~~q~~w~H~Ip~~~~~~~~RISlTFR 237 (241)
.- .+......+.++.|+++++... ..|+|.++ ..+.|++++|-
T Consensus 133 ~~-----~~~~g~~~Vkp~aG~~vlfps~----~lH~v~pV--t~G~R~~~~~W 175 (226)
T PRK05467 133 VI-----EDTYGEHRVKLPAGDLVLYPST----SLHRVTPV--TRGVRVASFFW 175 (226)
T ss_pred EE-----ecCCCcEEEecCCCeEEEECCC----Cceeeeec--cCccEEEEEec
Confidence 00 0011245789999999999864 56988886 46889999874
No 12
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=97.27 E-value=0.025 Score=46.12 Aligned_cols=160 Identities=16% Similarity=0.102 Sum_probs=84.2
Q ss_pred ceEEEeCCCCCHHHHHHHHHHHHhcCCCCCceeee-cCeE-EeecceeeeeCCCCccceeecCCCCCCCCCCC-CchHHH
Q 026231 37 SEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRV-FGRS-CLQPRDTCYVASEGVTQLIYSGYRPHPYSWDD-FPPLKD 113 (241)
Q Consensus 37 ~~~~~~~~fl~~~ea~~L~~~l~~~~~w~~~~~~~-~G~~-~~~pR~~~~~~~~g~~~y~ysg~~~~~~~w~~-~P~L~~ 113 (241)
|.+.++++||+++|++.|.+... ...| +..+.. .+.. ... .|+-+.... ..+.. -|....
T Consensus 1 P~i~~~~~~ls~~ec~~li~~~~-~~~~-~~~~~~~~~~~~~~~-------------~~R~~~~~~--l~~~~~~~~~~~ 63 (178)
T smart00702 1 PGVVVFHDFLSPAECQKLLEEAE-PLGW-RGEVTRGDTNPNHDS-------------KYRQSNGTW--LELLKGDLVIER 63 (178)
T ss_pred CcEEEECCCCCHHHHHHHHHHhh-hhcc-cceeecCCCCccccC-------------CCEeeccee--cCCCCCCHHHHH
Confidence 35889999999999999988764 3345 322211 1100 000 122111100 00110 122333
Q ss_pred HHHHHHhhcCC------CCCceeeeeeecCCCCCcccccCCCCccCCCCeEEEEEc-------CCceeeEEeeCCCCCCC
Q 026231 114 ILDIVLKVLPG------SRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSF-------GCERDFLLKIKPNRRTD 180 (241)
Q Consensus 114 ~~~~~~e~~~g------~~~n~~liN~Y~~G~d~i~~H~D~~~~~g~~~~IasvSL-------G~~r~f~fr~~~~~~~~ 180 (241)
+.+++. .+++ .....+.+..|..|. ...+|.|..........++++.+ |+.-.|- ...
T Consensus 64 l~~~i~-~~~~~~~~~~~~~~~~~~~~Y~~g~-~~~~H~D~~~~~~~~~r~~T~~~yLn~~~~GG~~~f~--~~~----- 134 (178)
T smart00702 64 IRQRLA-DFLGLLRGLPLSAEDAQVARYGPGG-HYGPHVDNFEDDENGDRIATFLLYLNDVEEGGELVFP--GLG----- 134 (178)
T ss_pred HHHHHH-HHHCCCchhhccCcceEEEEECCCC-cccCcCCCCCCCCCCCeEEEEEEEeccCCcCceEEec--CCC-----
Confidence 333332 2222 223557888999998 89999998653211122333332 2222221 100
Q ss_pred CchhhhhhhccCCccceEEEcCCCcEEEEccCccccccccccccCCCCCceEEEecc
Q 026231 181 DEPVSKRLKKKGNLDQHSFTLKHGSMLVMRGYTQRDWIHSVPRRAKAESTRINLTFR 237 (241)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~l~L~~gsllvM~g~~q~~w~H~Ip~~~~~~~~RISlTFR 237 (241)
......+....|+++++....- ...|++.+. ..+.|++++..
T Consensus 135 ------------~~~~~~v~P~~G~~v~f~~~~~-~~~H~v~pv--~~G~r~~~~~W 176 (178)
T smart00702 135 ------------LMVCATVKPKKGDLLFFPSGRG-RSLHGVCPV--TRGSRWAITGW 176 (178)
T ss_pred ------------CccceEEeCCCCcEEEEeCCCC-CccccCCcc--eeCCEEEEEEE
Confidence 0124578899999999875421 457888885 34889998863
No 13
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=96.34 E-value=0.0051 Score=45.18 Aligned_cols=86 Identities=20% Similarity=0.271 Sum_probs=50.8
Q ss_pred eeeeeecCCCCCcccccCCCCccCCCCeEEEEEcC-Cc-----eeeEEeeCCCCCCCCchhhhhhhccCCccceEEE---
Q 026231 130 LLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFG-CE-----RDFLLKIKPNRRTDDEPVSKRLKKKGNLDQHSFT--- 200 (241)
Q Consensus 130 ~liN~Y~~G~d~i~~H~D~~~~~g~~~~IasvSLG-~~-----r~f~fr~~~~~~~~~~~~~~~~~~~~~~~~~~l~--- 200 (241)
|-++.|.+|. .++||.|....- ....-+.+.|. .. ..+.|...... ......+.
T Consensus 1 ~~~~~y~~G~-~~~~H~D~~~~~-~~~~t~llyL~~~~~~~~GG~l~~~~~~~~---------------~~~~~~~~~~~ 63 (100)
T PF13640_consen 1 MQLNRYPPGG-FFGPHTDNSYDP-HRRVTLLLYLNDPEWEFEGGELEFYPSKDS---------------DDVSREVEDFD 63 (100)
T ss_dssp -EEEEEETTE-EEEEEESSSCCC-SEEEEEEEESS-CS-HCEE--EEETTTS-T---------------SSTCEEEGGGS
T ss_pred CEEEEECcCC-EEeeeECCCCCC-cceEEEEEEECCCCcccCCCEEEEeccccC---------------CCcceEEEecc
Confidence 4588999998 999999984311 11122233455 22 34444332100 01122233
Q ss_pred --cCCCcEEEEccCccccccccccccCCCCCceEEEec
Q 026231 201 --LKHGSMLVMRGYTQRDWIHSVPRRAKAESTRINLTF 236 (241)
Q Consensus 201 --L~~gsllvM~g~~q~~w~H~Ip~~~~~~~~RISlTF 236 (241)
...|+++++.+ ....|+|.+. ...+.|++|++
T Consensus 64 ~~p~~g~~v~F~~---~~~~H~v~~v-~~~~~R~~l~~ 97 (100)
T PF13640_consen 64 IVPKPGRLVIFPS---DNSLHGVTPV-GEGGRRYSLTF 97 (100)
T ss_dssp EE-BTTEEEEEES---CTCEEEEEEE--EESEEEEEEE
T ss_pred ccCCCCEEEEEeC---CCCeecCccc-CCCCCEEEEEE
Confidence 89999999998 6678999986 34789999986
No 14
>PLN00052 prolyl 4-hydroxylase; Provisional
Probab=93.66 E-value=1.8 Score=38.89 Aligned_cols=105 Identities=11% Similarity=0.055 Sum_probs=56.5
Q ss_pred ccceEEeCCCCceEEEeCCCCCHHHHHHHHHHHHhcCCCCCceeee--cCeEEeecceeeeeCCCCccceeecCCCCCCC
Q 026231 26 KQRMVVDLGNGSEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRV--FGRSCLQPRDTCYVASEGVTQLIYSGYRPHPY 103 (241)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~fl~~~ea~~L~~~l~~~~~w~~~~~~~--~G~~~~~pR~~~~~~~~g~~~y~ysg~~~~~~ 103 (241)
.-.++..|.-.|.|.+++|||+++|.+.|.+.- +..+.+.++.- .|+......++. ....-.
T Consensus 43 ~~~kve~lS~~P~i~~~~nfLs~~Ecd~Li~la--~~~l~~S~v~~~~~g~~~~s~~RTS-------------~~~~l~- 106 (310)
T PLN00052 43 NASRVKAVSWQPRIFVYKGFLSDAECDHLVKLA--KKKIQRSMVADNKSGKSVMSEVRTS-------------SGMFLD- 106 (310)
T ss_pred CCceEEEecCCCCEEEECCcCCHHHHHHHHHhc--ccccccceeecCCCCccccCCCEEe-------------cceeec-
Confidence 444555565567899999999999999998753 22344332211 122221111121 000000
Q ss_pred CCCCCchHHHHHHHHHhhcCCCCC---ceeeeeeecCCCCCcccccCCC
Q 026231 104 SWDDFPPLKDILDIVLKVLPGSRF---NSLLLNRYKGGNDYVGWHADDE 149 (241)
Q Consensus 104 ~w~~~P~L~~~~~~~~e~~~g~~~---n~~liN~Y~~G~d~i~~H~D~~ 149 (241)
... -|.+..|.+++. .+++... ....|-.|..|+ .-.+|.|-.
T Consensus 107 ~~~-dpvv~~I~~Ria-~~t~lp~~~~E~lQVlrY~~Gq-~Y~~H~D~~ 152 (310)
T PLN00052 107 KRQ-DPVVSRIEERIA-AWTFLPEENAENIQILRYEHGQ-KYEPHFDYF 152 (310)
T ss_pred CCC-CHHHHHHHHHHH-HHhCCCcccCcceEEEecCCCC-CCCCCCCcc
Confidence 001 145566555553 3334332 335666799998 899999953
No 15
>TIGR01762 chlorin-enz chlorinating enzymes. This model represents a a group of highly homologous enzymes related to dioxygenases which chlorinate amino acid methyl groups. BarB1 and BarB2 are proposed to trichlorinate one of the methyl groups of a leucine residue in the biosynthesis of barbamide in the cyanobacterium Lyngbya majuscula. SyrB2 is proposed to chlorinate the methyl group of threonine in the biosynthesis of syringomycin in Pseudomonas syringae. CmaB is proposed to chlorinate the beta-methyl group of alloisoleucine in the process of ring closure in the biosynthesis of coronamic acid, a component of coronatine also in Pseudomonas syringae.
Probab=93.04 E-value=1.9 Score=38.25 Aligned_cols=41 Identities=15% Similarity=0.286 Sum_probs=30.2
Q ss_pred cceEEEcCCCcEEEEccCccccccccccccCCCCCceEEEecccc
Q 026231 195 DQHSFTLKHGSMLVMRGYTQRDWIHSVPRRAKAESTRINLTFRHV 239 (241)
Q Consensus 195 ~~~~l~L~~gsllvM~g~~q~~w~H~Ip~~~~~~~~RISlTFR~~ 239 (241)
..+.+.++.||+++|++-+ .|+-.+.......|+++++|.+
T Consensus 207 ~~v~~~lkaGd~~~f~~~t----~HgS~~N~S~~~~R~~~~~ry~ 247 (288)
T TIGR01762 207 SAVPMQMKAGQFIIFWSTL----MHASYPNSGESQMRMGFASRYV 247 (288)
T ss_pred ceeeeeeCCceEEEECCCc----eecCCCCCCCCceEEEEEEEEc
Confidence 3568999999999998875 4554443323456999999975
No 16
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=91.82 E-value=1.1 Score=33.04 Aligned_cols=98 Identities=15% Similarity=0.202 Sum_probs=42.3
Q ss_pred eeeeeecCCCCCcccccCCCCccCCCCeEEEEEcCCc-eeeEEeeCCCCCCCCchhhhhhhccCCccceEEEcCCCcEEE
Q 026231 130 LLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCE-RDFLLKIKPNRRTDDEPVSKRLKKKGNLDQHSFTLKHGSMLV 208 (241)
Q Consensus 130 ~liN~Y~~G~d~i~~H~D~~~~~g~~~~IasvSLG~~-r~f~fr~~~~~~~~~~~~~~~~~~~~~~~~~~l~L~~gsllv 208 (241)
|.+|.++.|. ...+|.-....+ +.|.=|.+... ..+.|.........+.+...............+..+.|+|+|
T Consensus 2 ~W~ni~~~g~-~~~~H~H~~s~~---SgVyYv~~p~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~lvl 77 (101)
T PF13759_consen 2 SWANIYRKGG-YNEPHNHPNSWL---SGVYYVQVPEGSGPLRFHDPRGSFSFGAPFDNYDQNDLNSPYYIVEPEEGDLVL 77 (101)
T ss_dssp EEEEEE-TT---EEEE--TT-SE---EEEEECE--TTS-SEEEE-TTCCCGTTS----TTTTCCC-SEEEE---TTEEEE
T ss_pred eeEEEeCCCC-ccCceECCCcCE---EEEEEEECCCCCCceeeeCCCccceecccccccccCcccCceEEeCCCCCEEEE
Confidence 5678888887 888887755432 13444444332 234553322111001110000001122446779999999999
Q ss_pred EccCccccccccccccCCCCCceEEEec
Q 026231 209 MRGYTQRDWIHSVPRRAKAESTRINLTF 236 (241)
Q Consensus 209 M~g~~q~~w~H~Ip~~~~~~~~RISlTF 236 (241)
+.+-. .|+|.+-. ....||||.|
T Consensus 78 FPs~l----~H~v~p~~-~~~~Risisf 100 (101)
T PF13759_consen 78 FPSWL----WHGVPPNN-SDEERISISF 100 (101)
T ss_dssp EETTS----EEEE-----SSS-EEEEEE
T ss_pred eCCCC----EEeccCcC-CCCCEEEEEc
Confidence 98654 58887754 3578999987
No 17
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro []. Interestingly TET2 is considered as an oncogene, as it is found mutated in some types of cancer []. This entry represents the double-stranded beta helix (DSBH) fold of the 2-oxoglutarate (2OG) - Fe(II) oxygenases. DSBH comprises a part of the catalytic domain in TETS. It is found in many organisms including fruit fly, African malaria mosquito, zebrafish, mouse and human.
Probab=90.77 E-value=0.88 Score=37.23 Aligned_cols=39 Identities=26% Similarity=0.413 Sum_probs=31.3
Q ss_pred cceEEEcCCCcEEEEccCccccccccccccC---CCCCceEEEec
Q 026231 195 DQHSFTLKHGSMLVMRGYTQRDWIHSVPRRA---KAESTRINLTF 236 (241)
Q Consensus 195 ~~~~l~L~~gsllvM~g~~q~~w~H~Ip~~~---~~~~~RISlTF 236 (241)
..+.+.+.+||++++.+. ...|++.+.. ...+.||||.|
T Consensus 126 ~g~~~~~~~GtVl~~~~~---~~~Hgvtpv~~~~~~~~~R~slvf 167 (171)
T PF12851_consen 126 LGVAFAYQPGTVLIFCAK---RELHGVTPVESPNRNHGTRISLVF 167 (171)
T ss_pred CCEEEecCCCcEEEEccc---ceeeecCcccCCCCCCCeEEEEEE
Confidence 357899999999999776 4589999854 23489999987
No 18
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=90.67 E-value=0.95 Score=40.68 Aligned_cols=84 Identities=18% Similarity=0.232 Sum_probs=45.7
Q ss_pred ceeeeeeec--CCCCCcccccCCCCccCCCCeEEEEEcCCceeeEEeeCCCCCCCCchhhhhhhcc-CCccceEEEcCCC
Q 026231 128 NSLLLNRYK--GGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPNRRTDDEPVSKRLKKK-GNLDQHSFTLKHG 204 (241)
Q Consensus 128 n~~liN~Y~--~G~d~i~~H~D~~~~~g~~~~IasvSLG~~r~f~fr~~~~~~~~~~~~~~~~~~~-~~~~~~~l~L~~g 204 (241)
..|-+|.|- .|+.++++|.|+. -|.+|-+.+.....+-........... ....+.. ......++.|++|
T Consensus 112 ~~~~~n~Y~tp~g~~g~~~H~D~~-------dvfvlQ~~G~K~W~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~pG 183 (319)
T PF08007_consen 112 CPVGANAYLTPPGSQGFGPHYDDH-------DVFVLQLEGRKRWRLYPPPDEPAPLYS-DQPFKQLEEFEPVEEVVLEPG 183 (319)
T ss_dssp S-EEEEEEEETSSBEESECEE-SS-------EEEEEEEES-EEEEEE-SCCCTTTSSC-E--TTTCG--STSEEEEE-TT
T ss_pred cccceEEEecCCCCCCccCEECCc-------ccEEEECCceeEEEECCCCcccccccC-CCCccccccCceeEEEEECCC
Confidence 568999994 5546999999984 367788888888888762211110000 0000000 0134678999999
Q ss_pred cEEEEccCccccccccccc
Q 026231 205 SMLVMRGYTQRDWIHSVPR 223 (241)
Q Consensus 205 sllvM~g~~q~~w~H~Ip~ 223 (241)
|++.++.. |-|....
T Consensus 184 D~LYlPrG----~~H~~~~ 198 (319)
T PF08007_consen 184 DVLYLPRG----WWHQAVT 198 (319)
T ss_dssp -EEEE-TT-----EEEEEE
T ss_pred CEEEECCC----ccCCCCC
Confidence 99999866 4565444
No 19
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function.
Probab=88.88 E-value=6.8 Score=31.94 Aligned_cols=106 Identities=22% Similarity=0.234 Sum_probs=63.0
Q ss_pred hHHHHHHHHHhhcCCCCCceeeeeeecCCCCCcccccCCCCccCCCCeEEEEEcCCc------eeeEEeeCCCCCCCCch
Q 026231 110 PLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCE------RDFLLKIKPNRRTDDEP 183 (241)
Q Consensus 110 ~L~~~~~~~~e~~~g~~~n~~liN~Y~~G~d~i~~H~D~~~~~g~~~~IasvSLG~~------r~f~fr~~~~~~~~~~~ 183 (241)
.+.+++++..+. |..=-..|+..|..|. ....|.|-.....- |.=+++-|..+ ..|.+..-...
T Consensus 46 ~~~~fl~~ch~a--GQ~rptplllrY~~gd-yn~LHqdlyGe~vF-PlQvv~lLs~Pg~DftGGEFVltEQrPR------ 115 (173)
T PF09859_consen 46 TLAEFLARCHAA--GQTRPTPLLLRYGPGD-YNCLHQDLYGEHVF-PLQVVILLSEPGEDFTGGEFVLTEQRPR------ 115 (173)
T ss_pred cHHHHHHHHHhc--cCCCCchhhheeCCCC-ccccccCCCCCccc-CeEEEEEcCCCCCcccCceEEEEEecCC------
Confidence 567777666432 4333345777899887 99999997443221 22222333211 23444432211
Q ss_pred hhhhhhccCCccceEEEcCCCcEEEEccC----------ccccccccccccCCCCCceEEEe
Q 026231 184 VSKRLKKKGNLDQHSFTLKHGSMLVMRGY----------TQRDWIHSVPRRAKAESTRINLT 235 (241)
Q Consensus 184 ~~~~~~~~~~~~~~~l~L~~gsllvM~g~----------~q~~w~H~Ip~~~~~~~~RISlT 235 (241)
.++....++|..||.+|+... -+..-+|+|... -++.|..|.
T Consensus 116 --------~QSR~~V~~L~qGda~if~t~~RPv~G~rG~yRv~~RHgVS~v--rsG~R~tLg 167 (173)
T PF09859_consen 116 --------MQSRAMVLPLRQGDALIFATNHRPVRGARGYYRVNMRHGVSRV--RSGERHTLG 167 (173)
T ss_pred --------ccCccccCCcCCCCEEEEecCCCCcCCCccceecccccccccc--cccceEEEE
Confidence 134567799999999999754 345667888875 467777653
No 20
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=85.87 E-value=2.7 Score=35.02 Aligned_cols=92 Identities=20% Similarity=0.346 Sum_probs=52.1
Q ss_pred eeeeecCCCCCcccccCCCCcc-CCCCeEEEEEcCCceeeEEeeCCCCCC-CCchhhhhhhccCCccceEEEcCCCcEEE
Q 026231 131 LLNRYKGGNDYVGWHADDEKLY-GSTPEIASVSFGCERDFLLKIKPNRRT-DDEPVSKRLKKKGNLDQHSFTLKHGSMLV 208 (241)
Q Consensus 131 liN~Y~~G~d~i~~H~D~~~~~-g~~~~IasvSLG~~r~f~fr~~~~~~~-~~~~~~~~~~~~~~~~~~~l~L~~gsllv 208 (241)
+.|+|..|. ..++|.|..... .+...- .++---.+.+-+. .+.+- +|+-- ..+.=....+.|+-|||++
T Consensus 85 ~Fn~Y~eg~-~f~fHvDgavr~~hp~~~~-~lrtdls~tlfl~--DPedYdGGeLV-----v~dtYg~h~VklPAGdLVl 155 (229)
T COG3128 85 LFNRYQEGD-FFGFHVDGAVRSIHPGSGF-RLRTDLSCTLFLS--DPEDYDGGELV-----VNDTYGNHRVKLPAGDLVL 155 (229)
T ss_pred hhhhccCCC-cccccccCcccccCCCCCc-eeEeeeeeeeecC--CccccCCceEE-----EeccccceEEeccCCCEEE
Confidence 678999998 999999986544 333221 2221111111111 11111 11100 0011124568999999999
Q ss_pred EccCccccccccccccCCCCCceEEEecc
Q 026231 209 MRGYTQRDWIHSVPRRAKAESTRINLTFR 237 (241)
Q Consensus 209 M~g~~q~~w~H~Ip~~~~~~~~RISlTFR 237 (241)
..+.+ .|+|.++ .++.|+..-|-
T Consensus 156 ypStS----lH~VtPV--TRg~R~asffW 178 (229)
T COG3128 156 YPSTS----LHEVTPV--TRGERFASFFW 178 (229)
T ss_pred ccccc----ceecccc--ccCceEEEeee
Confidence 98775 5888876 57888887663
No 21
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=85.17 E-value=12 Score=31.40 Aligned_cols=101 Identities=15% Similarity=0.133 Sum_probs=53.9
Q ss_pred CceeeeeeecCCCCCcccccCCCCccCCCCeEEEEEc-CCceeeEEeeCCCCCCCCch-hhhhhhccCCccceEEEcCCC
Q 026231 127 FNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSF-GCERDFLLKIKPNRRTDDEP-VSKRLKKKGNLDQHSFTLKHG 204 (241)
Q Consensus 127 ~n~~liN~Y~~G~d~i~~H~D~~~~~g~~~~IasvSL-G~~r~f~fr~~~~~~~~~~~-~~~~~~~~~~~~~~~l~L~~g 204 (241)
+..+-+|.+..|. ..+.|.-....+ +.|.=|+. +....+.|...........+ .....+ ......+.+..+.|
T Consensus 95 i~~~W~ni~~~Gg-~h~~H~Hp~~~l---SgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~~-~~~~~~~~v~P~~G 169 (201)
T TIGR02466 95 IQKAWVNILPQGG-THSPHLHPGSVI---SGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNAK-RAVQRFVYVPPQEG 169 (201)
T ss_pred EeeEeEEEcCCCC-ccCceECCCceE---EEEEEEeCCCCCCceeEecCcchhhhccccccCccc-cccCccEEECCCCC
Confidence 5668899999987 888887754321 12222332 22233444321110000000 000000 01122445778999
Q ss_pred cEEEEccCccccccccccccCCCCCceEEEecc
Q 026231 205 SMLVMRGYTQRDWIHSVPRRAKAESTRINLTFR 237 (241)
Q Consensus 205 sllvM~g~~q~~w~H~Ip~~~~~~~~RISlTFR 237 (241)
+|+++..-. .|+|++-. ....||||.|=
T Consensus 170 ~lvlFPS~L----~H~v~p~~-~~~~RISiSFN 197 (201)
T TIGR02466 170 RVLLFESWL----RHEVPPNE-SEEERISVSFN 197 (201)
T ss_pred eEEEECCCC----ceecCCCC-CCCCEEEEEEe
Confidence 999997764 57888743 36899999883
No 22
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only]
Probab=77.87 E-value=15 Score=33.01 Aligned_cols=42 Identities=17% Similarity=0.275 Sum_probs=29.3
Q ss_pred cceEEEcCCCcEEEEccCcccccccccccc-----CCCCC-ceEEEec
Q 026231 195 DQHSFTLKHGSMLVMRGYTQRDWIHSVPRR-----AKAES-TRINLTF 236 (241)
Q Consensus 195 ~~~~l~L~~gsllvM~g~~q~~w~H~Ip~~-----~~~~~-~RISlTF 236 (241)
.-+.+.-.+|+|+|--|++-+.|.-+.-+. ....+ .|+|+-|
T Consensus 221 ~Wl~v~P~pgtlvVNiGdmLe~~Tng~lrST~HRV~~~~~~~R~Sipf 268 (322)
T COG3491 221 GWLDVPPIPGTLVVNIGDMLERWTNGRLRSTVHRVRNPPGVDRYSIPF 268 (322)
T ss_pred CeeECCCCCCeEEEeHHHHHHHHhCCeeccccceeecCCCccceeeee
Confidence 467888999999999998877776433221 11344 8999876
No 23
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=75.92 E-value=14 Score=33.56 Aligned_cols=42 Identities=14% Similarity=0.194 Sum_probs=31.4
Q ss_pred cceEEEcCCCcEEEEccCcccccc--------ccccccCCCCCceEEEecc
Q 026231 195 DQHSFTLKHGSMLVMRGYTQRDWI--------HSVPRRAKAESTRINLTFR 237 (241)
Q Consensus 195 ~~~~l~L~~gsllvM~g~~q~~w~--------H~Ip~~~~~~~~RISlTFR 237 (241)
.-+.++..+|.++|.-|++-+.|. |.|-.. .....|+|+.|=
T Consensus 246 ~Wv~V~p~pgalVVNiGD~Le~wTNg~~kSt~HRVv~~-~~~~~R~Sia~F 295 (341)
T PLN02984 246 EWFNVKPIANTLVVNLGDMMQVISDDEYKSVLHRVGKR-NKKKERYSICYF 295 (341)
T ss_pred ceEECCCCCCeEEEECChhhhhhcCCeeeCCCCccccC-CCCCCeEEEEEE
Confidence 356788899999999999888887 877211 135679999774
No 24
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=75.64 E-value=7.7 Score=33.88 Aligned_cols=40 Identities=10% Similarity=0.042 Sum_probs=30.0
Q ss_pred ceEEEcCCCcEEEEccCcccccc--------ccccccCCCCCceEEEecc
Q 026231 196 QHSFTLKHGSMLVMRGYTQRDWI--------HSVPRRAKAESTRINLTFR 237 (241)
Q Consensus 196 ~~~l~L~~gsllvM~g~~q~~w~--------H~Ip~~~~~~~~RISlTFR 237 (241)
-+.+.-.+|+++|.-|++-+.|. |.|-.. ....|+||.|=
T Consensus 163 Wi~V~p~p~a~vVNiGD~l~~~tng~~~S~~HRVv~~--~~~~R~Sia~F 210 (262)
T PLN03001 163 WLMVPPISDAILIIIADQTEIITNGNYKSAQHRAIAN--ANKARLSVATF 210 (262)
T ss_pred EEECCCCCCcEEEEccHHHHHHhCCccccccceEEcC--CCCCEEEEEEE
Confidence 56777888999999999887877 555431 35679999774
No 25
>PLN02904 oxidoreductase
Probab=74.44 E-value=13 Score=34.03 Aligned_cols=82 Identities=12% Similarity=0.099 Sum_probs=50.9
Q ss_pred ceeeeeeecCC-----CCCcccccCCCCccCCCCeEEEEEcCCceeeEEeeCCCCCCCCchhhhhhhccCCccceEEEcC
Q 026231 128 NSLLLNRYKGG-----NDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPNRRTDDEPVSKRLKKKGNLDQHSFTLK 202 (241)
Q Consensus 128 n~~liN~Y~~G-----~d~i~~H~D~~~~~g~~~~IasvSLG~~r~f~fr~~~~~~~~~~~~~~~~~~~~~~~~~~l~L~ 202 (241)
...-+|+|.+- .-+++.|.|-.. |..|- -...-+.+.... +.-+.++..
T Consensus 208 ~~lrl~~YPp~p~~~~~~g~~~HtD~g~-------lTlL~-qd~~GLQV~~~~------------------g~Wi~V~p~ 261 (357)
T PLN02904 208 QVMAVNCYPACPEPEIALGMPPHSDFGS-------LTILL-QSSQGLQIMDCN------------------KNWVCVPYI 261 (357)
T ss_pred cEEEeeecCCCCCcccccCCcCccCCCc-------eEEEe-cCCCeeeEEeCC------------------CCEEECCCC
Confidence 34678899752 336789999633 22221 112234444321 236678889
Q ss_pred CCcEEEEccCccccc--------cccccccCCCCCceEEEecc
Q 026231 203 HGSMLVMRGYTQRDW--------IHSVPRRAKAESTRINLTFR 237 (241)
Q Consensus 203 ~gsllvM~g~~q~~w--------~H~Ip~~~~~~~~RISlTFR 237 (241)
+|+++|--|.+-+.| .|.|... ....|+|+.|-
T Consensus 262 pgalVVNiGD~Le~~TNG~~kSt~HRVv~~--~~~~R~Si~~F 302 (357)
T PLN02904 262 EGALIVQLGDQVEVMSNGIYKSVVHRVTVN--KDYKRLSFASL 302 (357)
T ss_pred CCeEEEEccHHHHHHhCCeeeccCCcccCC--CCCCEEEEEEe
Confidence 999999999977666 4555321 35679999874
No 26
>PLN02216 protein SRG1
Probab=73.58 E-value=14 Score=33.82 Aligned_cols=82 Identities=15% Similarity=0.014 Sum_probs=50.0
Q ss_pred ceeeeeeecCC-----CCCcccccCCCCccCCCCeEEEEEc-CCceeeEEeeCCCCCCCCchhhhhhhccCCccceEEEc
Q 026231 128 NSLLLNRYKGG-----NDYVGWHADDEKLYGSTPEIASVSF-GCERDFLLKIKPNRRTDDEPVSKRLKKKGNLDQHSFTL 201 (241)
Q Consensus 128 n~~liN~Y~~G-----~d~i~~H~D~~~~~g~~~~IasvSL-G~~r~f~fr~~~~~~~~~~~~~~~~~~~~~~~~~~l~L 201 (241)
..+-+|+|.+- .-+++.|.|-.. |..|-- ....=+.+.+ . +.-+.++-
T Consensus 210 ~~lRl~~YPp~p~~~~~~G~~~HtD~g~-------lTlL~q~~~v~GLQV~~-~------------------g~Wi~V~p 263 (357)
T PLN02216 210 QSIRMNYYPPCPQPDQVIGLTPHSDAVG-------LTILLQVNEVEGLQIKK-D------------------GKWVSVKP 263 (357)
T ss_pred heeEEeecCCCCCcccccCccCcccCce-------EEEEEecCCCCceeEEE-C------------------CEEEECCC
Confidence 45678999652 236888998532 222211 1112244432 1 23566777
Q ss_pred CCCcEEEEccCcccccc--------ccccccCCCCCceEEEecc
Q 026231 202 KHGSMLVMRGYTQRDWI--------HSVPRRAKAESTRINLTFR 237 (241)
Q Consensus 202 ~~gsllvM~g~~q~~w~--------H~Ip~~~~~~~~RISlTFR 237 (241)
.+|.++|.-|.+-+.|. |.|... ....|+||.|-
T Consensus 264 ~pgalvVNiGD~L~~~TNG~~kS~~HRVv~~--~~~~R~Si~~F 305 (357)
T PLN02216 264 LPNALVVNVGDILEIITNGTYRSIEHRGVVN--SEKERLSVATF 305 (357)
T ss_pred CCCeEEEEcchhhHhhcCCeeeccCceeecC--CCCCEEEEEEE
Confidence 88999998888877776 766431 35679999774
No 27
>PLN02947 oxidoreductase
Probab=71.66 E-value=17 Score=33.40 Aligned_cols=81 Identities=15% Similarity=0.053 Sum_probs=47.5
Q ss_pred eeeeeeecCC-----CCCcccccCCCCccCCCCeEEEEEcCCceeeEEeeCCCCCCCCchhhhhhhccCCccceEEEcCC
Q 026231 129 SLLLNRYKGG-----NDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPNRRTDDEPVSKRLKKKGNLDQHSFTLKH 203 (241)
Q Consensus 129 ~~liN~Y~~G-----~d~i~~H~D~~~~~g~~~~IasvSLG~~r~f~fr~~~~~~~~~~~~~~~~~~~~~~~~~~l~L~~ 203 (241)
.+.+|+|.+- .-+++.|.|-.. |..|-=....-+.+.. . +.-+.++..+
T Consensus 226 ~lrln~YPp~p~~~~~~G~~~HTD~g~-------lTlL~Qd~v~GLQV~~-~------------------g~Wi~V~p~p 279 (374)
T PLN02947 226 MMVVNCYPACPEPELTLGMPPHSDYGF-------LTLLLQDEVEGLQIMH-A------------------GRWVTVEPIP 279 (374)
T ss_pred eeeeecCCCCCCcccccCCCCccCCCc-------eEEEEecCCCCeeEeE-C------------------CEEEeCCCCC
Confidence 4678899763 236888999532 2222111222234432 1 2356677778
Q ss_pred CcEEEEccCcccccc--------ccccccCCCCCceEEEecc
Q 026231 204 GSMLVMRGYTQRDWI--------HSVPRRAKAESTRINLTFR 237 (241)
Q Consensus 204 gsllvM~g~~q~~w~--------H~Ip~~~~~~~~RISlTFR 237 (241)
|.++|--|.+-+.|. |.|.. .....|+||.|-
T Consensus 280 ga~VVNvGD~Lq~~SNG~~kS~~HRVv~--~~~~~R~Sia~F 319 (374)
T PLN02947 280 GSFVVNVGDHLEIFSNGRYKSVLHRVRV--NSTKPRISVASL 319 (374)
T ss_pred CeEEEEeCceeeeeeCCEEecccccccc--CCCCCEEEEEEE
Confidence 888888888666664 55532 135679999874
No 28
>COG5285 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=70.57 E-value=20 Score=31.88 Aligned_cols=39 Identities=21% Similarity=0.367 Sum_probs=28.9
Q ss_pred ceEEEcCCCcEEEEccCccccccccccccCCCCCceEEEecccc
Q 026231 196 QHSFTLKHGSMLVMRGYTQRDWIHSVPRRAKAESTRINLTFRHV 239 (241)
Q Consensus 196 ~~~l~L~~gsllvM~g~~q~~w~H~Ip~~~~~~~~RISlTFR~~ 239 (241)
...+.|+.||++++.+..- |+-.... ....|.++||+.+
T Consensus 192 ~~pv~lekGDallF~~~L~----HaA~aNr-T~~~R~A~~~~~~ 230 (299)
T COG5285 192 AVPVELEKGDALLFNGSLW----HAAGANR-TSADRVALTLQFT 230 (299)
T ss_pred ceeeeecCCCEEEEcchhh----hhhhcCC-CCcccceEEEEEe
Confidence 5679999999999999854 4433322 3478999999865
No 29
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase
Probab=70.46 E-value=18 Score=33.02 Aligned_cols=84 Identities=12% Similarity=0.069 Sum_probs=49.8
Q ss_pred ceeeeeeecCC-----CCCcccccCCCCccCCCCeEEEEEcCCceeeEEeeCCCCCCCCchhhhhhhccCCccceEEEcC
Q 026231 128 NSLLLNRYKGG-----NDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPNRRTDDEPVSKRLKKKGNLDQHSFTLK 202 (241)
Q Consensus 128 n~~liN~Y~~G-----~d~i~~H~D~~~~~g~~~~IasvSLG~~r~f~fr~~~~~~~~~~~~~~~~~~~~~~~~~~l~L~ 202 (241)
..+.+|+|..- .-+++.|.|... |..|-=-...-+.+..... ..-+.++..
T Consensus 195 ~~lrl~~YP~~~~~~~~~G~~~HTD~g~-------lTlL~Qd~v~GLQV~~~~~-----------------~~Wi~Vpp~ 250 (358)
T PLN02515 195 QKVVVNYYPKCPQPDLTLGLKRHTDPGT-------ITLLLQDQVGGLQATRDGG-----------------KTWITVQPV 250 (358)
T ss_pred ceEEEeecCCCCChhhccCCCCCCCCCe-------EEEEecCCCCceEEEECCC-----------------CeEEECCCC
Confidence 35678999752 226888998632 2222111112234432211 135678888
Q ss_pred CCcEEEEccCcccccc--------ccccccCCCCCceEEEecc
Q 026231 203 HGSMLVMRGYTQRDWI--------HSVPRRAKAESTRINLTFR 237 (241)
Q Consensus 203 ~gsllvM~g~~q~~w~--------H~Ip~~~~~~~~RISlTFR 237 (241)
+|.++|--|++-+.|. |.|.. .....|+||.|-
T Consensus 251 pgalVVNiGD~L~~~TNG~~kSt~HRVv~--~~~~~R~Si~~F 291 (358)
T PLN02515 251 EGAFVVNLGDHGHYLSNGRFKNADHQAVV--NSNCSRLSIATF 291 (358)
T ss_pred CCeEEEEccHHHHHHhCCeeeeecceEEC--CCCCCEEEEEEE
Confidence 9999999999777775 55422 135679999874
No 30
>PTZ00273 oxidase reductase; Provisional
Probab=68.65 E-value=18 Score=32.37 Aligned_cols=39 Identities=23% Similarity=0.283 Sum_probs=28.6
Q ss_pred ceEEEcCCCcEEEEccCccccc--------cccccccCCCCCceEEEecc
Q 026231 196 QHSFTLKHGSMLVMRGYTQRDW--------IHSVPRRAKAESTRINLTFR 237 (241)
Q Consensus 196 ~~~l~L~~gsllvM~g~~q~~w--------~H~Ip~~~~~~~~RISlTFR 237 (241)
-+.++..+|+++|.-|++-+.| .|.|.. ....|+||.|=
T Consensus 226 Wi~V~p~pg~lvVNvGD~l~~~TnG~~kSt~HRVv~---~~~~R~Si~~F 272 (320)
T PTZ00273 226 WMDVPPLEGSFVVNIGDMMEMWSNGRYRSTPHRVVN---TGVERYSMPFF 272 (320)
T ss_pred EEeCCCCCCeEEEEHHHHHHHHHCCeeeCCCccccC---CCCCeEEEEEE
Confidence 5678888999999988866665 455542 35679999874
No 31
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=64.29 E-value=16 Score=33.02 Aligned_cols=40 Identities=20% Similarity=0.288 Sum_probs=31.2
Q ss_pred cceEEEcCCCcEEEEccCcccccc--------ccccccCCCCCceEEEecc
Q 026231 195 DQHSFTLKHGSMLVMRGYTQRDWI--------HSVPRRAKAESTRINLTFR 237 (241)
Q Consensus 195 ~~~~l~L~~gsllvM~g~~q~~w~--------H~Ip~~~~~~~~RISlTFR 237 (241)
.-+.++..+|+++|--|.+-+.|. |.|.. ....|+||.|-
T Consensus 234 ~Wi~Vpp~pg~~VVNiGD~L~~wTng~~kSt~HRVv~---~~~~R~Sia~F 281 (332)
T PLN03002 234 KWEYVPPIKGAFIVNLGDMLERWSNGFFKSTLHRVLG---NGQERYSIPFF 281 (332)
T ss_pred cEEECCCCCCeEEEEHHHHHHHHhCCeeECcCCeecC---CCCCeeEEEEE
Confidence 356677888999999999888886 88865 34579999874
No 32
>PLN02997 flavonol synthase
Probab=62.92 E-value=27 Score=31.48 Aligned_cols=40 Identities=15% Similarity=0.143 Sum_probs=29.6
Q ss_pred ceEEEcCCCcEEEEccCcccccc--------ccccccCCCCCceEEEecc
Q 026231 196 QHSFTLKHGSMLVMRGYTQRDWI--------HSVPRRAKAESTRINLTFR 237 (241)
Q Consensus 196 ~~~l~L~~gsllvM~g~~q~~w~--------H~Ip~~~~~~~~RISlTFR 237 (241)
-+.++..+|.++|--|++-+.|. |.|... ....|+|+.|-
T Consensus 230 Wi~V~p~pgalvVNiGD~Le~~TNG~~kSt~HRVv~~--~~~~R~Si~fF 277 (325)
T PLN02997 230 WLDLNYINSAVVVIIGDQLMRMTNGRFKNVLHRAKTD--KERLRISWPVF 277 (325)
T ss_pred EEECCCCCCeEEEEechHHHHHhCCccccccceeeCC--CCCCEEEEEEE
Confidence 56778889999999999777766 666431 34569999874
No 33
>PLN02485 oxidoreductase
Probab=62.57 E-value=24 Score=31.69 Aligned_cols=41 Identities=17% Similarity=0.198 Sum_probs=30.8
Q ss_pred cceEEEcCCCcEEEEccCcccccc--------ccccccCCCCCceEEEecc
Q 026231 195 DQHSFTLKHGSMLVMRGYTQRDWI--------HSVPRRAKAESTRINLTFR 237 (241)
Q Consensus 195 ~~~~l~L~~gsllvM~g~~q~~w~--------H~Ip~~~~~~~~RISlTFR 237 (241)
.-+.++..+|.++|--|++-+.|. |.|... ....|+|+.|=
T Consensus 236 ~Wi~V~p~pg~~vVNiGD~L~~~TnG~~~St~HRVv~~--~~~~R~Si~~F 284 (329)
T PLN02485 236 EWIWAIPIPGTFVCNIGDMLKIWSNGVYQSTLHRVINN--SPKYRVCVAFF 284 (329)
T ss_pred cEEECCCCCCcEEEEhHHHHHHHHCCEeeCCCceecCC--CCCCeEEEEEE
Confidence 356788899999999999888877 666431 24569999774
No 34
>PLN02704 flavonol synthase
Probab=61.04 E-value=23 Score=32.02 Aligned_cols=40 Identities=13% Similarity=0.095 Sum_probs=29.8
Q ss_pred ceEEEcCCCcEEEEccCcccccc--------ccccccCCCCCceEEEecc
Q 026231 196 QHSFTLKHGSMLVMRGYTQRDWI--------HSVPRRAKAESTRINLTFR 237 (241)
Q Consensus 196 ~~~l~L~~gsllvM~g~~q~~w~--------H~Ip~~~~~~~~RISlTFR 237 (241)
-+.+...+|+++|--|.+-+.|. |.|.. .....|+||.|=
T Consensus 246 Wi~V~p~pg~lvVNvGD~L~~~TNg~~kSt~HRVv~--~~~~~R~Si~~F 293 (335)
T PLN02704 246 WFDVKYIPNALVIHIGDQIEILSNGKYKSVLHRTTV--NKEKTRMSWPVF 293 (335)
T ss_pred EEeCCCCCCeEEEEechHHHHHhCCeeecccceeec--CCCCCeEEEEEE
Confidence 56788889999999999877776 44432 135679999874
No 35
>PLN02156 gibberellin 2-beta-dioxygenase
Probab=59.03 E-value=46 Score=30.13 Aligned_cols=43 Identities=16% Similarity=0.221 Sum_probs=30.1
Q ss_pred cceEEEcCCCcEEEEccCccccccccccccC------CCCCceEEEecc
Q 026231 195 DQHSFTLKHGSMLVMRGYTQRDWIHSVPRRA------KAESTRINLTFR 237 (241)
Q Consensus 195 ~~~~l~L~~gsllvM~g~~q~~w~H~Ip~~~------~~~~~RISlTFR 237 (241)
.-+.++-.+|.++|--|++-+.|..+.-+.. .....|+|+.|=
T Consensus 227 ~Wi~Vpp~pga~VVNiGD~l~~wTNg~~kSt~HRVv~~~~~~R~SiafF 275 (335)
T PLN02156 227 TWVDVPPDHSSFFVLVGDTLQVMTNGRFKSVKHRVVTNTKRSRISMIYF 275 (335)
T ss_pred CEEEccCCCCcEEEEhHHHHHHHhCCeeeccceeeecCCCCCEEEEEEe
Confidence 3677888999999999998777765432211 134569999874
No 36
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=57.24 E-value=45 Score=30.29 Aligned_cols=83 Identities=12% Similarity=0.001 Sum_probs=48.5
Q ss_pred CceeeeeeecCC-----CCCcccccCCCCccCCCCeEEEEEcCCceeeEEeeCCCCCCCCchhhhhhhccCCccceEEEc
Q 026231 127 FNSLLLNRYKGG-----NDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPNRRTDDEPVSKRLKKKGNLDQHSFTL 201 (241)
Q Consensus 127 ~n~~liN~Y~~G-----~d~i~~H~D~~~~~g~~~~IasvSLG~~r~f~fr~~~~~~~~~~~~~~~~~~~~~~~~~~l~L 201 (241)
...+.+|+|.+- .-+++.|.|-.. |..|-=-...-+.+.. . +.-+.++.
T Consensus 196 ~~~lrl~~YPp~~~~~~~~G~~~HtD~g~-------lTlL~Qd~v~GLQV~~-~------------------g~Wi~V~p 249 (348)
T PLN02912 196 GQHMAINYYPPCPQPELTYGLPGHKDANL-------ITVLLQDEVSGLQVFK-D------------------GKWIAVNP 249 (348)
T ss_pred cceeeeeecCCCCChhhcCCcCCCcCCCc-------eEEEEECCCCceEEEE-C------------------CcEEECCC
Confidence 345678999762 236888999632 2222101111233332 1 23567778
Q ss_pred CCCcEEEEccCcccccc--------ccccccCCCCCceEEEecc
Q 026231 202 KHGSMLVMRGYTQRDWI--------HSVPRRAKAESTRINLTFR 237 (241)
Q Consensus 202 ~~gsllvM~g~~q~~w~--------H~Ip~~~~~~~~RISlTFR 237 (241)
.+|.++|--|.+-+.|. |.|-. .....|+||.|-
T Consensus 250 ~pgalvVNiGD~L~~~TNG~~kSt~HRVv~--~~~~~R~Sia~F 291 (348)
T PLN02912 250 IPNTFIVNLGDQMQVISNDKYKSVLHRAVV--NTDKERISIPTF 291 (348)
T ss_pred cCCeEEEEcCHHHHHHhCCEEEcccccccC--CCCCCEEEEEEE
Confidence 88999988888766664 44421 135679999874
No 37
>PLN02393 leucoanthocyanidin dioxygenase like protein
Probab=55.77 E-value=40 Score=30.80 Aligned_cols=41 Identities=17% Similarity=0.136 Sum_probs=29.8
Q ss_pred cceEEEcCCCcEEEEccCccccc--------cccccccCCCCCceEEEecc
Q 026231 195 DQHSFTLKHGSMLVMRGYTQRDW--------IHSVPRRAKAESTRINLTFR 237 (241)
Q Consensus 195 ~~~~l~L~~gsllvM~g~~q~~w--------~H~Ip~~~~~~~~RISlTFR 237 (241)
.-+.++..+|.++|.-|.+-+.| .|.|.. .....|+|+.|=
T Consensus 260 ~W~~V~p~pgalVVNiGD~l~~~Tng~~kSt~HRVv~--~~~~~R~SiafF 308 (362)
T PLN02393 260 AWITVKPVPDAFIVNIGDQIQVLSNAIYKSVEHRVIV--NSAKERVSLAFF 308 (362)
T ss_pred EEEECCCCCCeEEEEcchhhHhhcCCeeeccceeccc--CCCCCEEEEEEE
Confidence 35678888999999999977777 365532 134679999874
No 38
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=55.51 E-value=59 Score=29.46 Aligned_cols=41 Identities=15% Similarity=0.288 Sum_probs=29.3
Q ss_pred cceEEEcCCCcEEEEccCcccccc--------ccccccCCCCCceEEEecc
Q 026231 195 DQHSFTLKHGSMLVMRGYTQRDWI--------HSVPRRAKAESTRINLTFR 237 (241)
Q Consensus 195 ~~~~l~L~~gsllvM~g~~q~~w~--------H~Ip~~~~~~~~RISlTFR 237 (241)
.-+.++..+|+++|--|++-+.|. |.|.. .....|+||.|-
T Consensus 241 ~Wi~V~p~pg~~vVNiGD~L~~~Tng~~~St~HRVv~--~~~~~R~Si~~F 289 (345)
T PLN02750 241 EWIPVKPIPDAFIINIGNCMQVWTNDLYWSAEHRVVV--NSQKERFSIPFF 289 (345)
T ss_pred eEEEccCCCCeEEEEhHHHHHHHhCCeeecccceecc--CCCCCEEEEEEe
Confidence 367788899999999998766665 44432 135679999874
No 39
>PLN02365 2-oxoglutarate-dependent dioxygenase
Probab=54.15 E-value=39 Score=29.95 Aligned_cols=41 Identities=24% Similarity=0.330 Sum_probs=29.8
Q ss_pred cceEEEcCCCcEEEEccCcccccc--------ccccccCCCCCceEEEecc
Q 026231 195 DQHSFTLKHGSMLVMRGYTQRDWI--------HSVPRRAKAESTRINLTFR 237 (241)
Q Consensus 195 ~~~~l~L~~gsllvM~g~~q~~w~--------H~Ip~~~~~~~~RISlTFR 237 (241)
.-+.++..+|.++|.-|++-+.|. |.|-. .....|+|+.|=
T Consensus 198 ~Wi~V~p~pga~vVNiGD~l~~~TNG~~~St~HRVv~--~~~~~R~Si~~F 246 (300)
T PLN02365 198 EFVPVDPLPGTLLVNLGDVATAWSNGRLCNVKHRVQC--KEATMRISIASF 246 (300)
T ss_pred eEEecCCCCCeEEEEhhHHHHHHhCCceecccceeEc--CCCCCEEEEEEE
Confidence 357788899999999999877774 44432 124569999874
No 40
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=53.02 E-value=57 Score=29.43 Aligned_cols=43 Identities=7% Similarity=0.102 Sum_probs=29.6
Q ss_pred cceEEEcCCCcEEEEccCccccccccccccC------CCCCceEEEecc
Q 026231 195 DQHSFTLKHGSMLVMRGYTQRDWIHSVPRRA------KAESTRINLTFR 237 (241)
Q Consensus 195 ~~~~l~L~~gsllvM~g~~q~~w~H~Ip~~~------~~~~~RISlTFR 237 (241)
.-+.++..+|+++|--|.+-+.|..+.-+.. .....|+|+.|=
T Consensus 237 ~Wi~V~p~pg~lVVNiGD~L~~~TNG~~kSt~HRVv~~~~~~R~Sia~F 285 (337)
T PLN02639 237 KWVAVNPHPGAFVINIGDQLQALSNGRYKSVWHRAVVNTDKERMSVASF 285 (337)
T ss_pred eEEeccCCCCeEEEechhHHHHHhCCeeeccCcccccCCCCCEEEEEEE
Confidence 3667888899999999997777654332211 135679999874
No 41
>PLN02276 gibberellin 20-oxidase
Probab=52.80 E-value=62 Score=29.54 Aligned_cols=43 Identities=21% Similarity=0.203 Sum_probs=29.9
Q ss_pred cceEEEcCCCcEEEEccCcccccccccccc------CCCCCceEEEecc
Q 026231 195 DQHSFTLKHGSMLVMRGYTQRDWIHSVPRR------AKAESTRINLTFR 237 (241)
Q Consensus 195 ~~~~l~L~~gsllvM~g~~q~~w~H~Ip~~------~~~~~~RISlTFR 237 (241)
.-+.++..+|+++|--|.+-+.|..+.-+. ......|+|+.|=
T Consensus 252 ~Wi~V~p~pgalVVNiGD~L~~~TNG~~kSt~HRVv~~~~~~R~Sia~F 300 (361)
T PLN02276 252 KWRSVRPRPGALVVNIGDTFMALSNGRYKSCLHRAVVNSERERRSLAFF 300 (361)
T ss_pred EEEEcCCCCCeEEEEcHHHHHHHhCCccccccceeecCCCCCEEEEEEE
Confidence 367788899999999999777764433221 1145779999874
No 42
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=51.95 E-value=54 Score=29.81 Aligned_cols=40 Identities=18% Similarity=0.120 Sum_probs=29.1
Q ss_pred ceEEEcCCCcEEEEccCcccccc--------ccccccCCCCCceEEEecc
Q 026231 196 QHSFTLKHGSMLVMRGYTQRDWI--------HSVPRRAKAESTRINLTFR 237 (241)
Q Consensus 196 ~~~l~L~~gsllvM~g~~q~~w~--------H~Ip~~~~~~~~RISlTFR 237 (241)
-+.++-.+|+++|--|.+-+.|. |.|-. .....|+||.|=
T Consensus 251 Wi~V~p~pg~lVVNiGD~Le~~Tng~~kSt~HRVv~--~~~~~R~Si~fF 298 (348)
T PLN00417 251 WYKAPIVPDTILINVGDQMEIMSNGIYKSPVHRVVT--NREKERISVATF 298 (348)
T ss_pred EEECCCCCCcEEEEcChHHHHHhCCeecccceEEec--CCCCCEEEEEEE
Confidence 56788889999999898877776 44422 135679999874
No 43
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=48.81 E-value=77 Score=28.55 Aligned_cols=81 Identities=20% Similarity=0.128 Sum_probs=48.6
Q ss_pred eeeeeeecCC-----CCCcccccCCCCccCCCCeEEEEEcC-CceeeEEeeCCCCCCCCchhhhhhhccCCccceEEEcC
Q 026231 129 SLLLNRYKGG-----NDYVGWHADDEKLYGSTPEIASVSFG-CERDFLLKIKPNRRTDDEPVSKRLKKKGNLDQHSFTLK 202 (241)
Q Consensus 129 ~~liN~Y~~G-----~d~i~~H~D~~~~~g~~~~IasvSLG-~~r~f~fr~~~~~~~~~~~~~~~~~~~~~~~~~~l~L~ 202 (241)
...+|+|.+- .-+++.|+|... |.+|--- .-.-+.+..+. +.-+.+..-
T Consensus 177 ~~r~n~Yp~cp~pe~~lGl~~HtD~~~-------lTiLlqd~~V~GLQv~~~d------------------g~Wi~V~P~ 231 (322)
T KOG0143|consen 177 VMRLNYYPPCPEPELTLGLGAHTDKSF-------LTILLQDDDVGGLQVFTKD------------------GKWIDVPPI 231 (322)
T ss_pred EEEEeecCCCcCccccccccCccCcCc-------eEEEEccCCcCceEEEecC------------------CeEEECCCC
Confidence 5689999763 458999999642 2222111 12223333211 236677778
Q ss_pred CCcEEEEccCcccccc--------ccccccCCCCCceEEEec
Q 026231 203 HGSMLVMRGYTQRDWI--------HSVPRRAKAESTRINLTF 236 (241)
Q Consensus 203 ~gsllvM~g~~q~~w~--------H~Ip~~~~~~~~RISlTF 236 (241)
+|+++|.-|.+-+.|. |.|-.. ....|||+-|
T Consensus 232 p~a~vVNiGD~l~~lSNG~ykSv~HRV~~n--~~~~R~Sia~ 271 (322)
T KOG0143|consen 232 PGAFVVNIGDMLQILSNGRYKSVLHRVVVN--GEKERISVAF 271 (322)
T ss_pred CCCEEEEcccHHhHhhCCcccceEEEEEeC--CCCceEEEEE
Confidence 8999999888766665 444432 2344999865
No 44
>PLN02254 gibberellin 3-beta-dioxygenase
Probab=48.09 E-value=63 Score=29.52 Aligned_cols=41 Identities=17% Similarity=0.129 Sum_probs=29.0
Q ss_pred cceEEEcCCCcEEEEccCcccccc--------ccccccCCCCCceEEEecc
Q 026231 195 DQHSFTLKHGSMLVMRGYTQRDWI--------HSVPRRAKAESTRINLTFR 237 (241)
Q Consensus 195 ~~~~l~L~~gsllvM~g~~q~~w~--------H~Ip~~~~~~~~RISlTFR 237 (241)
.-+.+.-.+|.++|--|.+-+.|. |.|.. .....|+|+.|-
T Consensus 257 ~Wi~V~p~pgalVVNiGD~lq~~SNg~~kS~~HRVv~--~~~~~R~Sia~F 305 (358)
T PLN02254 257 GWVTVPPVPGSLVVNVGDLLHILSNGRFPSVLHRAVV--NKTRHRISVAYF 305 (358)
T ss_pred EEEEcccCCCCEEEEhHHHHHHHhCCeeccccceeec--CCCCCEEEEEEE
Confidence 367788889999999998766664 44322 135679999774
No 45
>KOG1591 consensus Prolyl 4-hydroxylase alpha subunit [Amino acid transport and metabolism]
Probab=46.80 E-value=1.5e+02 Score=26.34 Aligned_cols=25 Identities=12% Similarity=0.243 Sum_probs=19.9
Q ss_pred CCCCceEEEeCCCCCHHHHHHHHHH
Q 026231 33 LGNGSEVIYFPRIIKMEDSWKFFDY 57 (241)
Q Consensus 33 l~~~~~~~~~~~fl~~~ea~~L~~~ 57 (241)
|.-.|.+.+++|||+++|.+.|...
T Consensus 93 lsw~P~~~~yhd~ls~~e~d~l~~l 117 (289)
T KOG1591|consen 93 LSWDPRVVLYHDFLSDEECDHLISL 117 (289)
T ss_pred cccCCceEeehhcCCHHHHHHHHHh
Confidence 3334569999999999999988763
No 46
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=46.51 E-value=73 Score=29.13 Aligned_cols=41 Identities=12% Similarity=0.081 Sum_probs=29.6
Q ss_pred cceEEEcCCCcEEEEccCcccccc--------ccccccCCCCCceEEEecc
Q 026231 195 DQHSFTLKHGSMLVMRGYTQRDWI--------HSVPRRAKAESTRINLTFR 237 (241)
Q Consensus 195 ~~~~l~L~~gsllvM~g~~q~~w~--------H~Ip~~~~~~~~RISlTFR 237 (241)
.-+.++..+|.++|.-|.+-+.|. |.|.. .....|+||.|-
T Consensus 259 ~Wi~V~p~pgalVVNiGD~L~~~SNG~~kS~~HRVv~--~~~~~R~Sia~F 307 (361)
T PLN02758 259 TWVPVHPVPNALVINIGDTLEVLTNGKYKSVEHRAVT--NKEKDRLSIVTF 307 (361)
T ss_pred EEEeCCCCCCeEEEEccchhhhhcCCeeecccceeec--CCCCCEEEEEEE
Confidence 356788889999999999877774 55432 135679999764
No 47
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase
Probab=45.87 E-value=53 Score=29.48 Aligned_cols=43 Identities=9% Similarity=0.061 Sum_probs=29.9
Q ss_pred cceEEEcCCCcEEEEccCccccccccccccC------CCCCceEEEecc
Q 026231 195 DQHSFTLKHGSMLVMRGYTQRDWIHSVPRRA------KAESTRINLTFR 237 (241)
Q Consensus 195 ~~~~l~L~~gsllvM~g~~q~~w~H~Ip~~~------~~~~~RISlTFR 237 (241)
.-+.++..+|+++|.-|++-+.|..+.-+.. .....|+|+.|-
T Consensus 205 ~Wi~V~p~pg~lvVNiGD~l~~~Tng~~kS~~HRVv~~~~~~R~Si~~F 253 (321)
T PLN02299 205 EWVDVPPMRHSIVVNLGDQLEVITNGKYKSVMHRVVAQTDGNRMSIASF 253 (321)
T ss_pred eEEECCCCCCeEEEEeCHHHHHHhCCceecccceeecCCCCCEEEEEEE
Confidence 3567888899999999998777764332211 134579999874
No 48
>COG3751 EGL-9 Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=45.33 E-value=83 Score=27.47 Aligned_cols=95 Identities=16% Similarity=0.183 Sum_probs=55.2
Q ss_pred eeeeeecCCCCCcccccCCCCccCCCCeEEEEEcCCceeeEEeeCCCCCCCCchh---hhhhhccCCccceEEEcCCCcE
Q 026231 130 LLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPNRRTDDEPV---SKRLKKKGNLDQHSFTLKHGSM 206 (241)
Q Consensus 130 ~liN~Y~~G~d~i~~H~D~~~~~g~~~~IasvSLG~~r~f~fr~~~~~~~~~~~~---~~~~~~~~~~~~~~l~L~~gsl 206 (241)
+-++.|.+|. .+..|.|.-.. .+.-.+..-++-.| ...++.+|+.. +.....+-......|.-.-|+|
T Consensus 138 ~~~~~y~~G~-~l~~H~D~~~~--~~~R~~~yv~y~~r------~wkpe~GGeL~l~~s~~~~~~~~~~~~ti~P~fn~l 208 (252)
T COG3751 138 GQITVYNPGC-FLLKHDDNGRD--KDIRLATYVYYLTR------EWKPEYGGELRLFHSLQKNNTAADSFKTIAPVFNSL 208 (252)
T ss_pred eeeeEecCCc-eeEeecccCCC--ccceEEEEEeccCC------CCCcCCCCceeecccccccccccccccccCCCCceE
Confidence 5788999999 99999998653 22234444344332 22233333321 0000011123455688889999
Q ss_pred EEEccCccccccccccccCCCCCceEEEe
Q 026231 207 LVMRGYTQRDWIHSVPRRAKAESTRINLT 235 (241)
Q Consensus 207 lvM~g~~q~~w~H~Ip~~~~~~~~RISlT 235 (241)
++|.-..... -|.|-.. .....|+|||
T Consensus 209 v~F~s~~~Hs-~h~V~~~-~~~~~RlsV~ 235 (252)
T COG3751 209 VFFKSRPSHS-VHSVEEP-YAAADRLSVT 235 (252)
T ss_pred EEEEecCCcc-ceecccc-ccccceEEEe
Confidence 9997775444 3555443 3688999997
No 49
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=44.40 E-value=1.4e+02 Score=27.62 Aligned_cols=113 Identities=19% Similarity=0.156 Sum_probs=64.7
Q ss_pred chHHHHHHHHHhhcCCCCCceeeeeeecCCCCCcccccCCCCccCCCCeEEEEEcCCceeeEEeeCCCCCCCCchhhhhh
Q 026231 109 PPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPNRRTDDEPVSKRL 188 (241)
Q Consensus 109 P~L~~~~~~~~e~~~g~~~n~~liN~Y~~G~d~i~~H~D~~~~~g~~~~IasvSLG~~r~f~fr~~~~~~~~~~~~~~~~ 188 (241)
|.+..+++... -++.+..+-+.|-+=.+|. ++|.|-|.-. |-.|-.-+.|.-.+........ --+ ....
T Consensus 101 p~v~~l~~~Fr-flP~wr~ddiMIS~a~~GG-gvg~H~D~YD-------VfliQg~G~RRW~v~~~~~~~~-~~~-~~d~ 169 (383)
T COG2850 101 PEVAALMEPFR-FLPDWRIDDIMISFAAPGG-GVGPHFDQYD-------VFLIQGQGRRRWRVGKKCNMST-LCP-HPDL 169 (383)
T ss_pred HHHHHHHHHhc-cCccccccceEEEEecCCC-ccCccccchh-------eeEEeecccceeecCCcccccC-cCC-Ccch
Confidence 45555555441 2456777888888667888 9999999732 5556665667777654322110 000 0000
Q ss_pred hcc-CCccceEEEcCCCcEEEEccCccccccccccccCCCCCceEEEeccc
Q 026231 189 KKK-GNLDQHSFTLKHGSMLVMRGYTQRDWIHSVPRRAKAESTRINLTFRH 238 (241)
Q Consensus 189 ~~~-~~~~~~~l~L~~gsllvM~g~~q~~w~H~Ip~~~~~~~~RISlTFR~ 238 (241)
+.. .-...+...|++||++.+.... |-|+|+- ..-.-+|+-||.
T Consensus 170 ~~~~~f~~~~d~vlepGDiLYiPp~~---~H~gvae---~dc~tySvG~r~ 214 (383)
T COG2850 170 LILAPFEPDIDEVLEPGDILYIPPGF---PHYGVAE---DDCMTYSVGFRA 214 (383)
T ss_pred hhcCCCCchhhhhcCCCceeecCCCC---CcCCccc---ccccceeeeccC
Confidence 000 0123456889999999987753 3346665 344456666663
No 50
>PF12088 DUF3565: Protein of unknown function (DUF3565); InterPro: IPR021948 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 30 to 78 amino acids in length. This protein has two conserved sequence motifs: WVA and CGH.
Probab=42.48 E-value=19 Score=24.27 Aligned_cols=23 Identities=35% Similarity=0.569 Sum_probs=18.2
Q ss_pred cccccCCCCccCCCCeEEEEEcCCceee
Q 026231 142 VGWHADDEKLYGSTPEIASVSFGCERDF 169 (241)
Q Consensus 142 i~~H~D~~~~~g~~~~IasvSLG~~r~f 169 (241)
||+|.|++.. =||-|+.|-..-+
T Consensus 1 vg~h~Dee~h-----WVA~L~CGH~QHv 23 (61)
T PF12088_consen 1 VGFHQDEEGH-----WVAELSCGHTQHV 23 (61)
T ss_pred CCccccccCC-----EEEEecccccccc
Confidence 6899999875 4999999976533
No 51
>PLN03178 leucoanthocyanidin dioxygenase; Provisional
Probab=42.44 E-value=78 Score=28.87 Aligned_cols=41 Identities=20% Similarity=0.040 Sum_probs=28.7
Q ss_pred cceEEEcCCCcEEEEccCcccccc--------ccccccCCCCCceEEEecc
Q 026231 195 DQHSFTLKHGSMLVMRGYTQRDWI--------HSVPRRAKAESTRINLTFR 237 (241)
Q Consensus 195 ~~~~l~L~~gsllvM~g~~q~~w~--------H~Ip~~~~~~~~RISlTFR 237 (241)
.-+.++..+|+++|--|.+-+.|. |.|.. .....|+||.|-
T Consensus 257 ~Wi~V~p~pg~lvVNiGD~L~~~TNG~~kSt~HRVv~--~~~~~R~Si~~F 305 (360)
T PLN03178 257 KWVTAKCVPDSIVVHIGDTLEILSNGRYKSILHRGLV--NKEKVRISWAVF 305 (360)
T ss_pred EEEEcCCCCCeEEEEccHHHHHHhCCccccccceeec--CCCCCeEEEEEE
Confidence 356788889999999888666654 55432 134569999874
No 52
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=40.66 E-value=27 Score=29.12 Aligned_cols=90 Identities=18% Similarity=0.288 Sum_probs=45.5
Q ss_pred cCCCCCcccccCCCCccCCCCeEEEEEcCCceeeEEeeCCCCCC---C---C----------chhhhhhhccCCccceEE
Q 026231 136 KGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPNRRT---D---D----------EPVSKRLKKKGNLDQHSF 199 (241)
Q Consensus 136 ~~G~d~i~~H~D~~~~~g~~~~IasvSLG~~r~f~fr~~~~~~~---~---~----------~~~~~~~~~~~~~~~~~l 199 (241)
..|. ...+|.|... .+..+--|..+...|-+...... . + ++...+.........+.+
T Consensus 139 ~~gs-~t~lH~D~~~------n~~~~i~G~K~~~L~pP~~~~~l~~~~~~~~~~~~~~~d~~~~d~~~~p~~~~~~~~~~ 211 (251)
T PF13621_consen 139 PPGS-FTPLHYDPSH------NLLAQIRGRKRWILFPPDDSPNLYPRPDSHGGTVFSWVDPDNPDLERFPKFRKAPPYEV 211 (251)
T ss_dssp -TTE-EEEEEE-SSE------EEEEEEESEEEEEEE-GGGGGGCTBETTTST-TCBBSS-TTS--TTT-CGGGG--EEEE
T ss_pred CCCc-eeeeeECchh------hhhhccCCCEEEEEECCccccccccceecccccceeeeeccChhhhhhhhhccCceeEE
Confidence 3444 8999999722 46666677766666654322100 0 0 000000000111257889
Q ss_pred EcCCCcEEEEccCccccccccccccCCCCCceEEEecc
Q 026231 200 TLKHGSMLVMRGYTQRDWIHSVPRRAKAESTRINLTFR 237 (241)
Q Consensus 200 ~L~~gsllvM~g~~q~~w~H~Ip~~~~~~~~RISlTFR 237 (241)
.|++||+|.+.. .|-|.|.... ....-||++|-
T Consensus 212 ~l~pGD~LfiP~----gWwH~V~~~~-~~~~sisvn~w 244 (251)
T PF13621_consen 212 VLEPGDVLFIPP----GWWHQVENLS-DDDLSISVNYW 244 (251)
T ss_dssp EEETT-EEEE-T----T-EEEEEEST-TSSCEEEEEEE
T ss_pred EECCCeEEEECC----CCeEEEEEcC-CCCeEEEEEEE
Confidence 999999999976 4899998721 02336777664
No 53
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=39.61 E-value=93 Score=26.87 Aligned_cols=67 Identities=19% Similarity=0.307 Sum_probs=41.7
Q ss_pred CCCCCceeeeee----ecCCCCCcccccCCCCccCCCCeEEEEEcCCceeeEEeeCCCCCCCCchhhhhhhccCCccceE
Q 026231 123 PGSRFNSLLLNR----YKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPNRRTDDEPVSKRLKKKGNLDQHS 198 (241)
Q Consensus 123 ~g~~~n~~liN~----Y~~G~d~i~~H~D~~~~~g~~~~IasvSLG~~r~f~fr~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (241)
+|..||..++.. +.+| .+.+|.|..... ...+..+.+.+...+... ...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~--~~d~~~~r~~~~--~~~~i~~~~~G~~~~~~~-----------------------~~~ 68 (290)
T PRK10572 16 PGYSFNAHLVAGLTPIEAGG--YLDFFIDRPLGM--KGYILNLTIRGQGVIFNG-----------------------GRA 68 (290)
T ss_pred CCCCcceeeeecccccccCC--ccceeeecCCCc--cceEEEEEEeccEEEecC-----------------------Cee
Confidence 466777765543 3443 477788765543 345666777676665432 124
Q ss_pred EEcCCCcEEEEccCcccc
Q 026231 199 FTLKHGSMLVMRGYTQRD 216 (241)
Q Consensus 199 l~L~~gsllvM~g~~q~~ 216 (241)
+.+++||++++....-+.
T Consensus 69 ~~~~~g~~i~i~p~~~h~ 86 (290)
T PRK10572 69 FVCRPGDLLLFPPGEIHH 86 (290)
T ss_pred EecCCCCEEEECCCCcee
Confidence 788999999888776443
No 54
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=37.23 E-value=65 Score=26.33 Aligned_cols=41 Identities=10% Similarity=0.117 Sum_probs=32.2
Q ss_pred EEEEcCCceeeEEeeCCCCCCCCchhhhhhhccCCccceEEEcCCCcEEEEccCccccc
Q 026231 159 ASVSFGCERDFLLKIKPNRRTDDEPVSKRLKKKGNLDQHSFTLKHGSMLVMRGYTQRDW 217 (241)
Q Consensus 159 asvSLG~~r~f~fr~~~~~~~~~~~~~~~~~~~~~~~~~~l~L~~gsllvM~g~~q~~w 217 (241)
+.+-|-+++-|.++.+.. .-+.|.++.|||+|++.+....|
T Consensus 96 iR~il~GtgYfDVrd~dd------------------~WIRi~vekGDlivlPaGiyHRF 136 (179)
T KOG2107|consen 96 IRYILEGTGYFDVRDKDD------------------QWIRIFVEKGDLIVLPAGIYHRF 136 (179)
T ss_pred eEEEeecceEEeeccCCC------------------CEEEEEEecCCEEEecCcceeee
Confidence 355677889999987542 47899999999999999876554
No 55
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=35.25 E-value=57 Score=26.29 Aligned_cols=40 Identities=10% Similarity=-0.006 Sum_probs=27.3
Q ss_pred EEcCCceeeEEeeCCCCCCCCchhhhhhhccCCccceEEEcCCCcEEEEccCcccccc
Q 026231 161 VSFGCERDFLLKIKPNRRTDDEPVSKRLKKKGNLDQHSFTLKHGSMLVMRGYTQRDWI 218 (241)
Q Consensus 161 vSLG~~r~f~fr~~~~~~~~~~~~~~~~~~~~~~~~~~l~L~~gsllvM~g~~q~~w~ 218 (241)
+-+.++..|.++... ..-+.|.++.|||++++..+...+.
T Consensus 97 ~i~~G~g~Fdvr~~~------------------~~wiri~~e~GDli~vP~g~~HrF~ 136 (157)
T PF03079_consen 97 YIVDGSGYFDVRDGD------------------DVWIRILCEKGDLIVVPAGTYHRFT 136 (157)
T ss_dssp EEEECEEEEEEE-TT------------------CEEEEEEEETTCEEEE-TT--EEEE
T ss_pred EEeCcEEEEEEEcCC------------------CEEEEEEEcCCCEEecCCCCceeEE
Confidence 446778999998533 2356799999999999888765553
No 56
>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1.14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.
Probab=34.22 E-value=1.2e+02 Score=24.33 Aligned_cols=81 Identities=14% Similarity=0.112 Sum_probs=44.7
Q ss_pred CCCceeeeeeecCCCCCcccccCCCCccCCCCeEEEEEc-CCceeeEEeeCCCCCCCCchhhhhhhccCCccceEEEcCC
Q 026231 125 SRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSF-GCERDFLLKIKPNRRTDDEPVSKRLKKKGNLDQHSFTLKH 203 (241)
Q Consensus 125 ~~~n~~liN~Y~~G~d~i~~H~D~~~~~g~~~~IasvSL-G~~r~f~fr~~~~~~~~~~~~~~~~~~~~~~~~~~l~L~~ 203 (241)
..+-.|.+..-.+|. .|.+|.|.....- ..-..|.. ...+.|.+. ......+.
T Consensus 77 ~~~~~~~~s~l~pg~-~I~pH~d~~~~~l--R~Hl~L~~p~~~~~~~v~-----------------------~~~~~w~~ 130 (163)
T PF05118_consen 77 CPLGRVRFSRLPPGT-HIKPHRDPTNLRL--RLHLPLIVPNPGCYIRVG-----------------------GETRHWRE 130 (163)
T ss_dssp TTCEEEEEEEEECTE-EEEEE-SS-TTEE--EEEEEEC--STTEEEEET-----------------------TEEEB--C
T ss_pred cchhhEEEEEECCCC-EECCeeCCCCcce--EEEEEEEcCCCCeEEEEC-----------------------CeEEEecc
Confidence 345667888888988 8999999754320 01111112 123333331 12477899
Q ss_pred CcEEEEccCccccccccccccCCCCCceEEEecc
Q 026231 204 GSMLVMRGYTQRDWIHSVPRRAKAESTRINLTFR 237 (241)
Q Consensus 204 gsllvM~g~~q~~w~H~Ip~~~~~~~~RISlTFR 237 (241)
|.++++... +.|.+-.. ....||.|.+-
T Consensus 131 G~~~~fD~s----~~H~~~N~--~~~~Rv~L~vD 158 (163)
T PF05118_consen 131 GECWVFDDS----FEHEVWNN--GDEDRVVLIVD 158 (163)
T ss_dssp TEEEEE-TT----S-EEEEES--SSS-EEEEEEE
T ss_pred CcEEEEeCC----EEEEEEeC--CCCCEEEEEEE
Confidence 999999776 56665552 57899998764
No 57
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=27.97 E-value=3.3e+02 Score=22.06 Aligned_cols=61 Identities=7% Similarity=0.078 Sum_probs=38.2
Q ss_pred eeeee-cCCCCCcccccCCCCccCCCCeEEEEEcCCceeeEEeeCCCCCCCCchhhhhhhccCCccceEEEcCCCcEEEE
Q 026231 131 LLNRY-KGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPNRRTDDEPVSKRLKKKGNLDQHSFTLKHGSMLVM 209 (241)
Q Consensus 131 liN~Y-~~G~d~i~~H~D~~~~~g~~~~IasvSLG~~r~f~fr~~~~~~~~~~~~~~~~~~~~~~~~~~l~L~~gsllvM 209 (241)
.|-.+ .+++ ...||.+... -.-+.|-++..+.++... ....+.|..||++++
T Consensus 30 ~v~~vgGpn~-R~d~H~~~td-------E~FyqleG~~~l~v~d~g-------------------~~~~v~L~eGd~flv 82 (159)
T TIGR03037 30 MVTVVGGPNA-RTDFHDDPGE-------EFFYQLKGEMYLKVTEEG-------------------KREDVPIREGDIFLL 82 (159)
T ss_pred EEEEeCCCCC-CcccccCCCc-------eEEEEEcceEEEEEEcCC-------------------cEEEEEECCCCEEEe
Confidence 33345 3444 7889996532 233445555666665321 123599999999999
Q ss_pred ccCcccccc
Q 026231 210 RGYTQRDWI 218 (241)
Q Consensus 210 ~g~~q~~w~ 218 (241)
.+...+.+.
T Consensus 83 P~gvpHsP~ 91 (159)
T TIGR03037 83 PPHVPHSPQ 91 (159)
T ss_pred CCCCCcccc
Confidence 998876653
No 58
>COG3826 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.48 E-value=4.5e+02 Score=22.08 Aligned_cols=84 Identities=21% Similarity=0.209 Sum_probs=44.7
Q ss_pred hHHHHHHHHHhhcCCCCCceeeeeeecCCCCCcccccCCCCccCCCCeEEEEEcCCc------eeeEEeeCCCCCCCCch
Q 026231 110 PLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCE------RDFLLKIKPNRRTDDEP 183 (241)
Q Consensus 110 ~L~~~~~~~~e~~~g~~~n~~liN~Y~~G~d~i~~H~D~~~~~g~~~~IasvSLG~~------r~f~fr~~~~~~~~~~~ 183 (241)
.+.+++++... .|..=-..|+-.|.+|. .-..|.|--..+.- |.-+.|.|..+ ..|.+..-...
T Consensus 108 tlad~L~~CHa--AGQ~RpTpLlLqYgpgD-~NcLHQDLYGelvF-PLQvailLsePg~DfTGGEF~lvEQRPR------ 177 (236)
T COG3826 108 TLADFLARCHA--AGQVRPTPLLLQYGPGD-YNCLHQDLYGELVF-PLQVAILLSEPGTDFTGGEFVLVEQRPR------ 177 (236)
T ss_pred hHHHHHHHHHh--ccCccCCceeEEecCCc-cchhhhhhhhceee-eeeEEEeccCCCCcccCceEEEEecccc------
Confidence 45555555422 13322334666788887 89999996433221 23333444321 12333321111
Q ss_pred hhhhhhccCCccceEEEcCCCcEEEEcc
Q 026231 184 VSKRLKKKGNLDQHSFTLKHGSMLVMRG 211 (241)
Q Consensus 184 ~~~~~~~~~~~~~~~l~L~~gsllvM~g 211 (241)
.++....++|..|+-+|+.-
T Consensus 178 --------~QSr~~vvpLrqG~g~vFav 197 (236)
T COG3826 178 --------MQSRPTVVPLRQGDGVVFAV 197 (236)
T ss_pred --------cccCCceeeccCCceEEEEe
Confidence 12345669999999999854
No 59
>KOG2731 consensus DNA alkylation damage repair protein [RNA processing and modification]
Probab=23.20 E-value=30 Score=31.72 Aligned_cols=48 Identities=25% Similarity=0.305 Sum_probs=38.1
Q ss_pred CCceeeeeeecCCCCCcccccCCCCccCC---CCeEEEEEcCCceeeEEeeCC
Q 026231 126 RFNSLLLNRYKGGNDYVGWHADDEKLYGS---TPEIASVSFGCERDFLLKIKP 175 (241)
Q Consensus 126 ~~n~~liN~Y~~G~d~i~~H~D~~~~~g~---~~~IasvSLG~~r~f~fr~~~ 175 (241)
-++.|++|.|..-. +++.|.|...++.. +-+|.+||.|. +.|.+....
T Consensus 313 lp~i~~~~f~~~~g-~~~~~Q~~~ey~ks~r~nl~Irqv~~~d-~~f~~~~~~ 363 (378)
T KOG2731|consen 313 LPDICIVNFYSETG-SLGLHQDKAEYLKSSRVNLPIRQVSIGD-AEFLYGDQR 363 (378)
T ss_pred CcccccccccCCCc-ccccchhHHHHHHhhhcCceeEEeccCc-cccccCchh
Confidence 48999999998777 79999998765432 34799999999 999886544
No 60
>PF08856 DUF1826: Protein of unknown function (DUF1826); InterPro: IPR014955 These proteins are functionally uncharacterised.
Probab=20.52 E-value=1.6e+02 Score=24.52 Aligned_cols=39 Identities=21% Similarity=0.333 Sum_probs=29.1
Q ss_pred EEEcCCCcEEEEccCcc-----ccccccccccCCCCCceEEEec
Q 026231 198 SFTLKHGSMLVMRGYTQ-----RDWIHSVPRRAKAESTRINLTF 236 (241)
Q Consensus 198 ~l~L~~gsllvM~g~~q-----~~w~H~Ip~~~~~~~~RISlTF 236 (241)
--.++.|++.+|.|+.. ..--|.-|........|+-||+
T Consensus 152 i~~~~~G~vallKG~~w~g~~~~glvHRSP~~~~~~~~RLlLtl 195 (196)
T PF08856_consen 152 IQQLPTGDVALLKGERWPGNEGAGLVHRSPPISGSGERRLLLTL 195 (196)
T ss_pred ceecCCCCEEEEccCCCCCCCCCceeeCCCCCCCCCCceEEEEe
Confidence 36799999999999952 2356777775545688998885
Done!