Your job contains 1 sequence.
>026232
MTLWCRTVQKVAHNSRTPFSRTTSYYHTIQAIPRECTGSRVSARDRSQGRIPAVVFAQDL
LDKNTDRRSPSRKQILSTERKQIHSILKSVELPFFCSTTFPLQIRAGSGSSVLLDSGKVL
PIKVHRDEETGRILNLVFVWADDGTELKVDVPVVFKGVESCPGLKKGGYLKSIRTSLKYL
CPAEHISPKIEVDVSNLDIGDRVFMSDIEVHPSWKLLSKNEKMPLCKISATKLENPEPAV
M
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 026232
(241 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2174979 - symbol:AT5G66860 species:3702 "Arabi... 762 1.3e-75 1
TIGR_CMR|ECH_0142 - symbol:ECH_0142 "ribosomal 5S rRNA E-... 176 7.7e-17 2
TIGR_CMR|APH_1302 - symbol:APH_1302 "ribosomal 5S rRNA E-... 154 4.2e-14 2
TIGR_CMR|GSU_0662 - symbol:GSU_0662 "ribosoma protein L25... 122 1.6e-07 2
TIGR_CMR|CHY_0195 - symbol:CHY_0195 "ribosomal protein L2... 121 8.1e-06 1
TIGR_CMR|NSE_0306 - symbol:NSE_0306 "ribosomal 5S rRNA E-... 102 3.6e-05 2
TIGR_CMR|SPO_0812 - symbol:SPO_0812 "ribosomal protein L2... 100 6.2e-05 2
TIGR_CMR|CJE_0356 - symbol:CJE_0356 "ribosomal protein L2... 112 6.9e-05 1
TIGR_CMR|CBU_1840 - symbol:CBU_1840 "ribosomal 5S rRNA E-... 115 0.00011 1
>TAIR|locus:2174979 [details] [associations]
symbol:AT5G66860 species:3702 "Arabidopsis thaliana"
[GO:0006412 "translation" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] InterPro:IPR011035 GO:GO:0005739 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0004812
EMBL:AB010700 KO:K02897 Gene3D:2.170.120.20 Gene3D:2.40.240.10
InterPro:IPR020056 InterPro:IPR020057 SUPFAM:SSF50715 EMBL:AY054545
EMBL:AY064668 IPI:IPI00546047 RefSeq:NP_201487.1 UniGene:At.24321
ProteinModelPortal:Q9FKZ4 SMR:Q9FKZ4 STRING:Q9FKZ4 PaxDb:Q9FKZ4
PRIDE:Q9FKZ4 DNASU:836820 EnsemblPlants:AT5G66860.1 GeneID:836820
KEGG:ath:AT5G66860 TAIR:At5g66860 eggNOG:NOG145694
HOGENOM:HOG000238024 InParanoid:Q9FKZ4 OMA:HIPPKIE PhylomeDB:Q9FKZ4
ProtClustDB:CLSN2686885 Genevestigator:Q9FKZ4 Uniprot:Q9FKZ4
Length = 249
Score = 762 (273.3 bits), Expect = 1.3e-75, P = 1.3e-75
Identities = 157/245 (64%), Positives = 187/245 (76%)
Query: 1 MTLWCRTVQKV-AHNSRTPFS------RTTSYYHTIQAIPRECTGSRVSARDRSQGRIPA 53
M W R ++ V A + P S R Y TIQAIPRE TG VSARDR+ GRIPA
Sbjct: 1 MAKWWRGLRSVTAEVADLPASSFGRSIRCIHQYQTIQAIPREATGRGVSARDRTIGRIPA 60
Query: 54 VVFAQDLLDKNTDRRSPSRKQILSTERKQIHSILKSVELPFFCSTTFPLQIRAGSGSSVL 113
VVF Q LLD + +R SRKQ+L+ ++KQI SI+ SV LPFFCSTTF LQIRAG GSS L
Sbjct: 61 VVFPQSLLDTDASKRGVSRKQLLTADKKQIKSIIDSVGLPFFCSTTFQLQIRAGQGSSTL 120
Query: 114 LDSGKVLPIKVHRDEETGRILNLVFVWADDGTELKVDVPVVFKGVESCPGLKKGGYLKSI 173
++SG+VLP+KVHRDEETG+ILNLVFVWADDG +LKVDVPVVFKG++ CPGL+KGG L++I
Sbjct: 121 VESGRVLPLKVHRDEETGKILNLVFVWADDGEKLKVDVPVVFKGLDHCPGLQKGGNLRTI 180
Query: 174 RTSLKYLCPAEHISPKIEVDVSNLDIGDRVFMSDIEVHPSWKLLSKNEKMPLCKISATK- 232
R++LK L PAEHI KIEVDVSNLDI D+V + D+ HPS KLLSKNE MP+CKI AT
Sbjct: 181 RSTLKLLGPAEHIPSKIEVDVSNLDIEDKVLLQDVVFHPSLKLLSKNETMPVCKIVATSP 240
Query: 233 LENPE 237
++ PE
Sbjct: 241 VKEPE 245
>TIGR_CMR|ECH_0142 [details] [associations]
symbol:ECH_0142 "ribosomal 5S rRNA E-loop binding protein
Ctc/L25/TL5" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0000315 "organellar large ribosomal subunit" evidence=ISS]
[GO:0003735 "structural constituent of ribosome" evidence=ISS]
[GO:0006412 "translation" evidence=ISS] [GO:0006950 "response to
stress" evidence=ISS] [GO:0008097 "5S rRNA binding" evidence=ISS]
HAMAP:MF_01334 InterPro:IPR001021 InterPro:IPR011035
InterPro:IPR020055 Pfam:PF01386 ProDom:PD012503 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0008097 eggNOG:COG1825 HOGENOM:HOG000214907 KO:K02897
OMA:ANVHAPR ProtClustDB:PRK05618 Gene3D:2.170.120.20
Gene3D:2.40.240.10 InterPro:IPR020056 InterPro:IPR020057
SUPFAM:SSF50715 TIGRFAMs:TIGR00731 RefSeq:YP_506970.1
ProteinModelPortal:Q2GHW3 STRING:Q2GHW3 GeneID:3926939
KEGG:ech:ECH_0142 PATRIC:20575829
BioCyc:ECHA205920:GJNR-142-MONOMER Uniprot:Q2GHW3
Length = 210
Score = 176 (67.0 bits), Expect = 7.7e-17, Sum P(2) = 7.7e-17
Identities = 39/123 (31%), Positives = 66/123 (53%)
Query: 114 LDSGK--VLPIKVHRDEETGRILNLVFVWADDGTELKVDVPVVFKGVESCPGLKKGGYLK 171
+D+ K VL V + T RI ++ F + D GTE+K++VP++F + C G+K+GG L
Sbjct: 70 IDNKKEYVLMRDVQKHPVTDRIQHVDFQFIDYGTEIKIEVPLIFTNEQKCIGIKRGGVLN 129
Query: 172 SIRTSLKYLCPAEHISPKIEVDVSNLDIGDRVFMSDIEVHPSWKLLSKNEKMPLCKISAT 231
+ +L C + I IE+D+S L G + +SD+++ P + K + IS+
Sbjct: 130 ILHRTLSIKCSPKAILQNIEIDLSGLTTGHSIHVSDLKLPPEVNVTMKEHNPAIVTISSA 189
Query: 232 KLE 234
E
Sbjct: 190 STE 192
Score = 45 (20.9 bits), Expect = 7.7e-17, Sum P(2) = 7.7e-17
Identities = 19/55 (34%), Positives = 25/55 (45%)
Query: 29 IQAIPRECTGSRVSARDRSQGRIPAVVFAQ--DLLDKNTDRR---SPSRKQILST 78
I A R+ G+ S R G IPAV++ + D L + R S R LST
Sbjct: 9 INASLRKNVGTGPSRALRLSGEIPAVIYGKGRDSLSISLSNREFVSKYRSAALST 63
>TIGR_CMR|APH_1302 [details] [associations]
symbol:APH_1302 "ribosomal 5S rRNA E-loop binding protein
Ctc/L25/TL5" species:212042 "Anaplasma phagocytophilum HZ"
[GO:0000315 "organellar large ribosomal subunit" evidence=ISS]
[GO:0003735 "structural constituent of ribosome" evidence=ISS]
[GO:0006412 "translation" evidence=ISS] [GO:0006950 "response to
stress" evidence=ISS] [GO:0008097 "5S rRNA binding" evidence=ISS]
HAMAP:MF_01334 InterPro:IPR001021 InterPro:IPR011035
InterPro:IPR020055 Pfam:PF01386 ProDom:PD012503 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:CP000235 GenomeReviews:CP000235_GR
GO:GO:0008097 RefSeq:YP_505816.1 ProteinModelPortal:Q2GII5
STRING:Q2GII5 GeneID:3931047 KEGG:aph:APH_1302 PATRIC:20951400
eggNOG:COG1825 HOGENOM:HOG000214907 KO:K02897 OMA:ANVHAPR
ProtClustDB:PRK05618 BioCyc:APHA212042:GHPM-1304-MONOMER
Gene3D:2.170.120.20 Gene3D:2.40.240.10 InterPro:IPR020056
InterPro:IPR020057 SUPFAM:SSF50715 TIGRFAMs:TIGR00731
Uniprot:Q2GII5
Length = 211
Score = 154 (59.3 bits), Expect = 4.2e-14, Sum P(2) = 4.2e-14
Identities = 31/113 (27%), Positives = 62/113 (54%)
Query: 119 VLPIKVHRDEETGRILNLVFVWADDGTELKVDVPVVFKGVESCPGLKKGGYLKSIRTSLK 178
V+ + + +G I ++ F + D E+K++VP+VF + C G+K+GG + + SL
Sbjct: 77 VITKDIQKHPVSGAIAHVDFQFVDQDAEMKMEVPLVFLNEQKCVGVKRGGVINILHRSLI 136
Query: 179 YLCPAEHISPKIEVDVSNLDIGDRVFMSDIEVHPSWKLLSKNEKMPLCKISAT 231
C HI +EVD+ ++ IG + +SD+++ + ++ K E + + A+
Sbjct: 137 IRCSPHHIPKSLEVDLIDVAIGHSLHVSDLKLPSTINVVMKEEDPVIATVVAS 189
Score = 46 (21.3 bits), Expect = 4.2e-14, Sum P(2) = 4.2e-14
Identities = 19/65 (29%), Positives = 32/65 (49%)
Query: 29 IQAIPRECTGSRVSARDRSQGRIPAVVFAQDLLDKNTDRRSPSRKQILSTERKQIHSIL- 87
+ A RE G+ + R++G IPAV++ KN D + S Q+ ++ + I
Sbjct: 9 VDASVRERCGTGSARALRARGLIPAVIYG-----KNRDPINISLSQVDFLKKCRTFPIFS 63
Query: 88 KSVEL 92
K +EL
Sbjct: 64 KLIEL 68
>TIGR_CMR|GSU_0662 [details] [associations]
symbol:GSU_0662 "ribosoma protein L25" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0006950 "response to stress" evidence=ISS] [GO:0008097 "5S rRNA
binding" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=ISS] HAMAP:MF_01334 InterPro:IPR001021 InterPro:IPR011035
InterPro:IPR020055 Pfam:PF01386 ProDom:PD012503 GO:GO:0006412
GO:GO:0005840 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0003735
GO:GO:0008097 eggNOG:COG1825 KO:K02897 OMA:ANVHAPR
ProtClustDB:PRK05618 Gene3D:2.170.120.20 Gene3D:2.40.240.10
InterPro:IPR020056 InterPro:IPR020057 SUPFAM:SSF50715
TIGRFAMs:TIGR00731 HOGENOM:HOG000214906 RefSeq:NP_951719.1
ProteinModelPortal:Q74FE7 DNASU:2685482 GeneID:2685482
KEGG:gsu:GSU0662 PATRIC:22024083 BioCyc:GSUL243231:GH27-681-MONOMER
Uniprot:Q74FE7
Length = 194
Score = 122 (48.0 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 42/134 (31%), Positives = 66/134 (49%)
Query: 106 AGSGSSVLLDSGKVLPIKVHRDEETGRILNLVFVWADDGTELKVDVPVVFKGVESCPGLK 165
+G GS L+ V+ + R+ G IL++ F ++KV VP+V G + G+K
Sbjct: 66 SGGGS---LNGNIVIVADMQRNPLKGDILHVDFHRISLDEKVKVHVPLVMVGTAA--GVK 120
Query: 166 KGGYLKSIRTSLKYLCPAEHISPKIEVDVSNLDIGDRVFMSDIEVHPSWKLLSKNEKMPL 225
+GG L + SL C I I VDV+NL IG + +S++ + K+L+ E P+
Sbjct: 121 EGGMLDVVTYSLDVECLPTAIPEAINVDVTNLAIGHSIHVSELVLPAGIKVLNDPET-PI 179
Query: 226 CKISATKLENPEPA 239
I K + PA
Sbjct: 180 VSIHG-KAKEEAPA 192
Score = 43 (20.2 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 34 RECTGSRVSARDRSQGRIPAVVFAQDL 60
RE G V+ + R+Q +P VV+ + +
Sbjct: 11 REKNGKGVARKLRAQDVVPGVVYGKGI 37
>TIGR_CMR|CHY_0195 [details] [associations]
symbol:CHY_0195 "ribosomal protein L25" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0006950 "response to stress" evidence=ISS]
[GO:0008097 "5S rRNA binding" evidence=ISS] HAMAP:MF_01334
InterPro:IPR001021 InterPro:IPR011035 InterPro:IPR020055
Pfam:PF01386 ProDom:PD012503 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0008097 eggNOG:COG1825 KO:K02897 OMA:ANVHAPR
ProtClustDB:PRK05618 Gene3D:2.170.120.20 Gene3D:2.40.240.10
InterPro:IPR020056 InterPro:IPR020057 SUPFAM:SSF50715
TIGRFAMs:TIGR00731 HOGENOM:HOG000214906 RefSeq:YP_359067.1
ProteinModelPortal:Q3AFL7 STRING:Q3AFL7 GeneID:3726555
KEGG:chy:CHY_0195 PATRIC:21273571
BioCyc:CHYD246194:GJCN-196-MONOMER Uniprot:Q3AFL7
Length = 197
Score = 121 (47.7 bits), Expect = 8.1e-06, P = 8.1e-06
Identities = 32/115 (27%), Positives = 62/115 (53%)
Query: 118 KVLPIKVHRDEETGRILNLVFVWADDGTELKVDVPVVFKGVESCPGLKKGGYLKSIRTSL 177
+VL ++ TG+++++ F + G +++ VPV G + G+K GG L+ + +
Sbjct: 68 RVLVKELQHHPVTGKLIHVDFQVVESGRKIRQLVPVELYGEPA--GVKAGGILEHGLSEV 125
Query: 178 KYLCPAEHISPKIEVDVSNLDIGDRVFMSDIEVHPSWKLLSKNEKMPLCKISATK 232
C E + IE DVS L++GD + + D+E+ P +++ E + + ISA +
Sbjct: 126 TVECLPEDLPEFIEADVSKLEVGDCLRVKDLELPPGVRVIEDPESI-IALISAPR 179
>TIGR_CMR|NSE_0306 [details] [associations]
symbol:NSE_0306 "ribosomal 5S rRNA E-loop binding protein
Ctc/L25/TL5" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0000315 "organellar large ribosomal subunit" evidence=ISS]
[GO:0003735 "structural constituent of ribosome" evidence=ISS]
[GO:0006412 "translation" evidence=ISS] [GO:0006950 "response to
stress" evidence=ISS] [GO:0008097 "5S rRNA binding" evidence=ISS]
HAMAP:MF_01334 InterPro:IPR001021 InterPro:IPR011035
InterPro:IPR020055 Pfam:PF01386 ProDom:PD012503 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:CP000237 GenomeReviews:CP000237_GR
GO:GO:0008097 eggNOG:COG1825 HOGENOM:HOG000214907 KO:K02897
Gene3D:2.170.120.20 Gene3D:2.40.240.10 InterPro:IPR020056
InterPro:IPR020057 SUPFAM:SSF50715 TIGRFAMs:TIGR00731
RefSeq:YP_506196.1 ProteinModelPortal:Q2GEA0 STRING:Q2GEA0
GeneID:3932101 KEGG:nse:NSE_0306 PATRIC:22680703 OMA:YGKEREN
ProtClustDB:CLSK2527976 BioCyc:NSEN222891:GHFU-332-MONOMER
Uniprot:Q2GEA0
Length = 194
Score = 102 (41.0 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 31/112 (27%), Positives = 52/112 (46%)
Query: 104 IRAGSGSSVLLDSGKVLPI--KVHRDEETGRI-LNLVFVWADDGTELKVDVPVVFKGVES 160
+ +GSG L GKV + K + + L+L FV+A + K VP+ F
Sbjct: 54 VLSGSGVVELSCEGKVYKVVPKAYELHPVSSVVLHLDFVFAGEHAS-KFQVPLNFVNSGK 112
Query: 161 CPGLKKGGYLKSIRTSLKYLCPAEHISPKIEVDVSNLDIGDRVFMSDIEVHP 212
++ G L ++ ++ C A ++ I VD+ N +GD + SD+ V P
Sbjct: 113 SEAIRLGAMLNIVKRTVLVRCTAANLPKSIPVDIENAKVGDSIKFSDL-VFP 163
Score = 48 (22.0 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 28 TIQAIPRECTGSRVSARDRSQGRIPAVVFAQD 59
+I+ IPR G + R G +PAV++ ++
Sbjct: 4 SIECIPRTSFGRNSANVLRRSGFVPAVIYGKE 35
>TIGR_CMR|SPO_0812 [details] [associations]
symbol:SPO_0812 "ribosomal protein L25" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0006950 "response to stress" evidence=ISS] [GO:0008097 "5S rRNA
binding" evidence=ISS] HAMAP:MF_01334 InterPro:IPR001021
InterPro:IPR011035 InterPro:IPR020055 Pfam:PF01386 ProDom:PD012503
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 GO:GO:0008097 eggNOG:COG1825 HOGENOM:HOG000214907
KO:K02897 ProtClustDB:PRK05618 Gene3D:2.170.120.20
Gene3D:2.40.240.10 InterPro:IPR020056 InterPro:IPR020057
SUPFAM:SSF50715 TIGRFAMs:TIGR00731 RefSeq:YP_166065.1
ProteinModelPortal:Q5LV90 GeneID:3194994 KEGG:sil:SPO0812
PATRIC:23374901 OMA:RDFTMHV Uniprot:Q5LV90
Length = 207
Score = 100 (40.3 bits), Expect = 6.2e-05, Sum P(2) = 6.2e-05
Identities = 39/145 (26%), Positives = 66/145 (45%)
Query: 86 ILKSVELPFFCSTTFPLQIRAGSGSSVLLDSGKVLPIKVHRDEETGRILNLVFVWADDGT 145
+LK ++ F ST F L++ + +V+ V RD +L + +
Sbjct: 51 LLKMLKAGRFKSTLFNLKVEGH-------EDVRVICRDVQRDVVKDLPTHLDLMRLRRTS 103
Query: 146 ELKVDVPVVFKGVESCPGLKKGGYLKSIRTSLKYLCPAEHISPKIEVDVSNLDIGDRVFM 205
+K+ + V F + PGLKKGG L +R ++ A I I VD++ L+IGD V +
Sbjct: 104 RIKLFIHVDFVNHAAAPGLKKGGVLTVVRPEVELEVTAGDIPESITVDLTGLNIGDVVTI 163
Query: 206 SDIEVHPSWKLLSKNEKMPLCKISA 230
S + + P+ + + ISA
Sbjct: 164 SSVTL-PAGAKPTVERDFVIANISA 187
Score = 50 (22.7 bits), Expect = 6.2e-05, Sum P(2) = 6.2e-05
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 31 AIPRECTGSRVSARDRSQGRIPAVVFAQD 59
A+ R TG + + R G +P +VF D
Sbjct: 10 ALERTGTGKGAARQARRDGMVPGIVFGGD 38
>TIGR_CMR|CJE_0356 [details] [associations]
symbol:CJE_0356 "ribosomal protein L25" species:195099
"Campylobacter jejuni RM1221" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006950 "response to stress"
evidence=ISS] [GO:0008097 "5S rRNA binding" evidence=ISS]
HAMAP:MF_01334 InterPro:IPR001021 InterPro:IPR011035
InterPro:IPR020055 Pfam:PF01386 ProDom:PD012503 GO:GO:0006412
GO:GO:0005840 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0003735
GO:GO:0008097 eggNOG:COG1825 KO:K02897 ProtClustDB:PRK05618
Gene3D:2.170.120.20 Gene3D:2.40.240.10 InterPro:IPR020056
InterPro:IPR020057 SUPFAM:SSF50715 TIGRFAMs:TIGR00731
RefSeq:YP_178375.1 ProteinModelPortal:Q5HWG0 STRING:Q5HWG0
GeneID:3231118 KEGG:cjr:CJE0356 PATRIC:20042416
HOGENOM:HOG000214906 OMA:MAIVLEA BioCyc:CJEJ195099:GJC0-361-MONOMER
Uniprot:Q5HWG0
Length = 178
Score = 112 (44.5 bits), Expect = 6.9e-05, P = 6.9e-05
Identities = 31/92 (33%), Positives = 45/92 (48%)
Query: 119 VLPIKVHRDEETGRILNLVFVWADDGTELKVDVPVVFKGVESCPGLKKGGYLKSIRTSLK 178
V+ + +D T + ++ A G K VPV G + GLK G L + LK
Sbjct: 68 VVVVDYQKDPVTAELKHVDLKVAQKGVISKYMVPVKITG--TAIGLKNKGVLIQSKRRLK 125
Query: 179 YLCPAEHISPKIEVDVSNLDIGDRVFMSDIEV 210
C AE++ E+DVS LD+GD + + DI V
Sbjct: 126 VKCAAENLPNFFELDVSKLDVGDALLVRDIVV 157
>TIGR_CMR|CBU_1840 [details] [associations]
symbol:CBU_1840 "ribosomal 5S rRNA E-loop binding protein
Ctc/L25/TL5" species:227377 "Coxiella burnetii RSA 493" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] [GO:0006950 "response to stress"
evidence=ISS] [GO:0008097 "5S rRNA binding" evidence=ISS]
HAMAP:MF_01334 InterPro:IPR001021 InterPro:IPR011035
InterPro:IPR020055 Pfam:PF01386 ProDom:PD012503 GO:GO:0006412
GO:GO:0005840 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0003735
GO:GO:0008097 eggNOG:COG1825 HOGENOM:HOG000214907 KO:K02897
OMA:ANVHAPR ProtClustDB:PRK05618 Gene3D:2.170.120.20
Gene3D:2.40.240.10 InterPro:IPR020056 InterPro:IPR020057
SUPFAM:SSF50715 TIGRFAMs:TIGR00731 RefSeq:NP_820819.1
ProteinModelPortal:Q83AP1 PRIDE:Q83AP1 GeneID:1209752
KEGG:cbu:CBU_1840 PATRIC:17932411
BioCyc:CBUR227377:GJ7S-1814-MONOMER Uniprot:Q83AP1
Length = 244
Score = 115 (45.5 bits), Expect = 0.00011, P = 0.00011
Identities = 26/94 (27%), Positives = 56/94 (59%)
Query: 118 KVLPIKVHRDEETGRILNLVFVWADDGTELKVDVPVVFKGVESCPGLKKGGYLKSIRTSL 177
KV+ + R +I+++ F +L ++VP+ F G + CPG++ GG + +++ +
Sbjct: 76 KVILKALQRHHTKPKIVHIDFQRIKASEKLIMNVPLHFLGEDDCPGVEAGGVVSHLQSEV 135
Query: 178 KYLC-PAEHISPKIEVDVSNLDIGDRVFMSDIEV 210
+ C PA+ + IEVD+S+L + + V +S++++
Sbjct: 136 EIRCLPAD-LPEYIEVDLSHLQLDESVHLSNLKL 168
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.134 0.398 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 241 241 0.00094 113 3 11 22 0.43 33
32 0.44 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 9
No. of states in DFA: 608 (65 KB)
Total size of DFA: 185 KB (2106 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 21.01u 0.14s 21.15t Elapsed: 00:00:01
Total cpu time: 21.01u 0.14s 21.15t Elapsed: 00:00:01
Start: Fri May 10 04:00:20 2013 End: Fri May 10 04:00:21 2013