Query 026232
Match_columns 241
No_of_seqs 126 out of 1097
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 08:41:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026232.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026232hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1feu_A 50S ribosomal protein L 100.0 1.6E-54 5.6E-59 375.3 20.6 176 27-233 3-179 (206)
2 2zjr_S 50S ribosomal protein L 100.0 6.4E-53 2.2E-57 371.0 12.4 179 33-238 2-181 (237)
3 1b75_A Protein (50S ribosomal 100.0 1.1E-29 3.9E-34 194.6 3.5 93 27-141 2-94 (94)
4 3lyw_A YBBR family protein; st 93.5 0.4 1.4E-05 35.7 8.1 74 148-228 4-83 (90)
5 2l3u_A YBBR family protein; be 78.9 1.9 6.6E-05 31.8 3.8 79 149-231 5-89 (98)
6 2kq1_A BH0266 protein; solutio 75.2 21 0.00071 26.9 8.9 80 145-231 8-98 (119)
7 2kps_A Uncharacterized protein 58.2 9.8 0.00034 28.1 3.8 72 150-230 6-86 (98)
8 2nwf_A Ubiquinol-cytochrome C 40.5 16 0.00054 28.7 2.6 19 189-207 3-21 (141)
9 2lyx_A Uncharacterized protein 35.0 82 0.0028 23.0 5.5 36 98-140 49-84 (87)
10 1q7l_B Aminoacylase-1; catalys 32.1 40 0.0014 23.4 3.4 27 32-59 19-45 (88)
11 1bdf_A RNA polymerase alpha su 24.0 40 0.0014 28.8 2.5 27 202-230 109-135 (235)
12 2a6h_A DNA-directed RNA polyme 23.5 57 0.0019 29.1 3.5 28 201-230 107-134 (315)
13 3lu0_A DNA-directed RNA polyme 22.3 33 0.0011 31.0 1.6 38 187-229 97-134 (329)
No 1
>1feu_A 50S ribosomal protein L25; general stress protein CTC, 5S rRNA-protein complex, cadmium IONS, ribosome; 2.30A {Thermus thermophilus} SCOP: b.53.1.1 PDB: 2j01_Z 1vsp_T 2hgj_Y 2hgq_Y 2hgu_Y 1vsa_T 2j03_Z 2jl6_Z 2jl8_Z 2v47_Z 2v49_Z 2wdi_Z 2wdj_Z 2wdl_Z 2wdn_Z 2wh2_Z 2wh4_Z 2wrj_Z 2wrl_Z 2wro_Z ...
Probab=100.00 E-value=1.6e-54 Score=375.26 Aligned_cols=176 Identities=22% Similarity=0.380 Sum_probs=165.6
Q ss_pred eEEEEEEcCCCCChHHHHHHHCCCccEEEeCCCcCCcCCCCCCCCCceEEEEeHHHHHHHHHhcCCCceeeeEEEEEE-c
Q 026232 27 HTIQAIPRECTGSRVSARDRSQGRIPAVVFAQDLLDKNTDRRSPSRKQILSTERKQIHSILKSVELPFFCSTTFPLQI-R 105 (241)
Q Consensus 27 ~~L~a~~R~~~Gk~~~rrLRr~G~VPaViYG~~~~~~~~~~~~~~~~~~v~v~~~~l~kll~~~g~~~~~~~v~~L~i-~ 105 (241)
++|+|+.|+ |+++|||||+|+|||||||++ .+ ++|+++.++|.+++++.+. +++|+|++ +
T Consensus 3 ~~l~a~~R~---k~aarrLRr~G~VPaVvYG~~-----------~e-~~i~v~~~el~~~l~~~~~----~~vi~L~i~~ 63 (206)
T 1feu_A 3 YRLKAYYRE---GEKPSALRRAGKLPGLMYNRH-----------LN-RKVYVDLVEFDKVFRQASI----HHVIVLELPD 63 (206)
T ss_dssp EEEECEECS---SSCHHHHHHTTEEEEEEECSS-----------CE-EEEEEEHHHHHHHHHHHTT----TSEEEEECTT
T ss_pred eEEEEEEeC---ChHHHHHHHCCCceEEEEcCC-----------ce-EEEEEcHHHHHHHHhhcCC----cEEEEEEEcC
Confidence 589999999 888999999999999999982 46 9999999999999987653 68999999 7
Q ss_pred CCCCccccccceeeeeeeeeeccCCCceeEEEEEEeCCCCEEEEEEeEEEEecCCCCccccCeEEEEEecEEEEEeecCC
Q 026232 106 AGSGSSVLLDSGKVLPIKVHRDEETGRILNLVFVWADDGTELKVDVPVVFKGVESCPGLKKGGYLKSIRTSLKYLCPAEH 185 (241)
Q Consensus 106 ~g~~~~~~~~~~~vlikevQ~hpv~~~ilHvDF~~v~~~~~V~v~VPI~l~G~~~s~Gvk~GG~L~~~~~~I~V~~lP~~ 185 (241)
| ++++||+||+|+||++++++|+|||++++ ++|+++|||+|+|+ |+|+|+||+|++.+++|+|+|+|.+
T Consensus 64 -G-------~~~~vlikdvQ~hpv~~~i~HvDF~~v~~-~~v~v~VPv~~~G~--~~gvk~GG~l~~~~~~v~V~~~p~~ 132 (206)
T 1feu_A 64 -G-------QSLPTLVRQVNLDKRRRRPEHVDFFVLSD-EPVEMYVPLRFVGT--PAGVRAGGVLQEIHRDILVKVSPRN 132 (206)
T ss_dssp -S-------CEEEEEEEEEEECSSSSCEEEEEEEECCS-SCEEEEEEEEEESC--CHHHHTTCEEEECCSEEEEEECGGG
T ss_pred -C-------CEEEEEEEEeEeCCCCCCeEEEEEEEECC-EEEEEEeeEEEEcC--cccccCceEEEEEEeEEEEEEcHHH
Confidence 6 46789999999999999999999999999 99999999999999 6899999999999999999999999
Q ss_pred CCCeEEEEccCCCCCCeEEEeccCCCCCeEEeecCCCccEEEEEcCCC
Q 026232 186 ISPKIEVDVSNLDIGDRVFMSDIEVHPSWKLLSKNEKMPLCKISATKL 233 (241)
Q Consensus 186 IPe~I~VDVs~L~iGd~i~V~DL~lp~gv~il~~~~~~vV~~V~~~~~ 233 (241)
||++|+||||+|++||+||++||++|+|+++++ +++.+||+|.+|++
T Consensus 133 IPe~I~VDvs~L~iGdsi~v~Dl~lP~gv~~~~-d~d~~V~~V~~~~~ 179 (206)
T 1feu_A 133 IPEFIEVDVSGLEIGDSLHASDLKLPPGVELAV-SPEETIAAVVPPED 179 (206)
T ss_dssp CCSCEEEECTTCCTTEEEEGGGSCCCTTCEESS-CTTCEEEEEECSSS
T ss_pred CCccEEEEcccCCCCCEEEEeeccCCCCcEEcC-CCCcEEEEEeCCCc
Confidence 999999999999999999999999999999985 88999999999984
No 2
>2zjr_S 50S ribosomal protein L25; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.53.1.1 PDB: 1njm_T* 1nwx_T* 1njp_T* 1xbp_T* 2zjp_S* 2zjq_S 1nwy_T 3cf5_S* 3dll_S* 3pio_S* 3pip_S* 1nkw_T 1sm1_T* 1yl3_V 2b66_Z 2b9n_Z 2b9p_Z 1pnu_T 1pny_T 1vor_W ...
Probab=100.00 E-value=6.4e-53 Score=370.99 Aligned_cols=179 Identities=18% Similarity=0.325 Sum_probs=162.4
Q ss_pred EcCCCCChHHHHHHHCCCccEEEeCCCcCCcCCCCCCCCCceEEEEeHHHHHHHHHhcCCCceeeeEEEEEEcCCCCccc
Q 026232 33 PRECTGSRVSARDRSQGRIPAVVFAQDLLDKNTDRRSPSRKQILSTERKQIHSILKSVELPFFCSTTFPLQIRAGSGSSV 112 (241)
Q Consensus 33 ~R~~~Gk~~~rrLRr~G~VPaViYG~~~~~~~~~~~~~~~~~~v~v~~~~l~kll~~~g~~~~~~~v~~L~i~~g~~~~~ 112 (241)
+|+.+||+++||| |+|+||||||| + .++++|+++.++|.+++++.+. +++|+|+++ |.
T Consensus 2 ~R~~~GKgaaRrL-r~G~VPaVvYG-g-----------~e~v~i~v~~~el~k~l~~~~~----~~li~L~Id-G~---- 59 (237)
T 2zjr_S 2 ELTAKPRTPKQKL-DESMIAAVAYN-K-----------ENNVSFALDRKAFDRAFRQQST----TGLFDITVE-GG---- 59 (237)
T ss_dssp CCCBCCSCCHHHH-SSSCCCEEEES-S-----------SCCCCCBCCHHHHHHHHHHHTT----SCCCBCCCT-TC----
T ss_pred cccccCcHHHHHH-hCCCCCEEEeC-C-----------CCCEEEEECHHHHHHHHHhcCC----cEEEEEEEC-Cc----
Confidence 5999999999999 99999999999 5 3689999999999999987542 689999998 61
Q ss_pred cccceeeeeeeeeeccCCCceeEEEEEEeCCCCEEEEEEeEEEEecCCCCccccCeEEEEEecEEEEEe-ecCCCCCeEE
Q 026232 113 LLDSGKVLPIKVHRDEETGRILNLVFVWADDGTELKVDVPVVFKGVESCPGLKKGGYLKSIRTSLKYLC-PAEHISPKIE 191 (241)
Q Consensus 113 ~~~~~~vlikevQ~hpv~~~ilHvDF~~v~~~~~V~v~VPI~l~G~~~s~Gvk~GG~L~~~~~~I~V~~-lP~~IPe~I~ 191 (241)
++++||+||+|+||++++++|+|||+++++++|+++|||+|+|+ |+|+|+||+|++.+++|+|+| +|.+||++|+
T Consensus 60 --~~~~vliKdvQ~hPvk~~ilHVDF~~V~~~ekV~v~VPV~~vGe--~~GvK~GGvL~~~~~eveV~~~lP~~IPe~Ie 135 (237)
T 2zjr_S 60 --ETFPALVKAVQMDKRKRAPIHVDFYMVTYGEPVEVSVPVHTTGR--SQGEVQGGLVDIVVHNLQIVAPGPRRIPQELV 135 (237)
T ss_dssp --CCCBCCEEEEEECSSSCCEEEEEEECCCSSCCCEEEEECEEESC--CTTTTTTSEEECSCSEEEEECCCTTCCCSCCE
T ss_pred --eeEEEEEEEEEecCCCCCeEEEEEEEECCCCEEEEEEeEEEecC--CccccCCcEEEEEEeEEEEEEeCHHHCCccEE
Confidence 25689999999999999999999999999999999999999998 689999999999999999999 9999999999
Q ss_pred EEccCCCCCCeEEEeccCCCCCeEEeecCCCccEEEEEcCCCCCCCC
Q 026232 192 VDVSNLDIGDRVFMSDIEVHPSWKLLSKNEKMPLCKISATKLENPEP 238 (241)
Q Consensus 192 VDVs~L~iGd~i~V~DL~lp~gv~il~~~~~~vV~~V~~~~~e~~~~ 238 (241)
||||+|++||+||++||++|+|+++++ +++.+||+|..|+.+.+|+
T Consensus 136 VDVs~LeiGdsI~v~DL~LPeGv~l~~-d~d~vVvsV~~p~~~~ee~ 181 (237)
T 2zjr_S 136 VDVTKMNIGDHITAGDIKLPEGCTLAA-DPELTVVSVLPPRLTAEEL 181 (237)
T ss_dssp EECTTCCSSCEEETTTSCCSTTCCCCS-CTTCEEEEEECCC------
T ss_pred EEcccCCCCCEEEeeeccCCCCcEEcC-CCCcEEEEEEcCCCCCCcc
Confidence 999999999999999999999999985 8899999999998764443
No 3
>1b75_A Protein (50S ribosomal protein L25); RNA-binding protein, RNA binding protein; NMR {Escherichia coli} SCOP: b.53.1.1 PDB: 1d6k_A 1dfu_P 1giy_V 1ml5_v* 1p85_T 1p86_T 1vs6_V 1vs8_V 1vt2_V 2aw4_V 2awb_V 2gya_T 2gyc_T 2i2t_V 2i2v_V 2j28_V 2qam_V* 2qao_V* 2qba_V* 2qbc_V* ...
Probab=99.95 E-value=1.1e-29 Score=194.58 Aligned_cols=93 Identities=23% Similarity=0.359 Sum_probs=83.7
Q ss_pred eEEEEEEcCCCCChHHHHHHHCCCccEEEeCCCcCCcCCCCCCCCCceEEEEeHHHHHHHHHhcCCCceeeeEEEEEEcC
Q 026232 27 HTIQAIPRECTGSRVSARDRSQGRIPAVVFAQDLLDKNTDRRSPSRKQILSTERKQIHSILKSVELPFFCSTTFPLQIRA 106 (241)
Q Consensus 27 ~~L~a~~R~~~Gk~~~rrLRr~G~VPaViYG~~~~~~~~~~~~~~~~~~v~v~~~~l~kll~~~g~~~~~~~v~~L~i~~ 106 (241)
++|+|++|+.+||+++|||||+|+|||||||++ .++++++++.++|.+++++.+ +.+++|+|+++
T Consensus 2 ~~l~a~~R~~~Gk~~arrLRr~G~vPaVvYG~~-----------~e~~~i~v~~~~~~~~l~~~~---~~~~~i~L~i~- 66 (94)
T 1b75_A 2 FTINAEVRKEQGKGASRRLRAANKFPAIIYGGK-----------EAPLAIELDHDKVMNMQAKAE---FYSEVLTIVVD- 66 (94)
T ss_dssp CCEEECSSCCSSSSSSSSTTTTTBCCEEEECSS-----------SCCEEECCBSHHHHHHHTTTH---HHHTCEEEEES-
T ss_pred eEEEEEEecccCChHHHHHHHCCCceEEEECCC-----------CCCEEEEECHHHHHHHHhccC---cceEEEEEEEC-
Confidence 469999999999999999999999999999982 479999999999999997643 44688999998
Q ss_pred CCCccccccceeeeeeeeeeccCCCceeEEEEEEe
Q 026232 107 GSGSSVLLDSGKVLPIKVHRDEETGRILNLVFVWA 141 (241)
Q Consensus 107 g~~~~~~~~~~~vlikevQ~hpv~~~ilHvDF~~v 141 (241)
| +++.|++||+|+||++++++|+||++|
T Consensus 67 G-------~~~~vlikdvQ~hp~~~~i~HvDF~~v 94 (94)
T 1b75_A 67 G-------KEIKVKAQDVQRHPYKPKLQHIDFVRA 94 (94)
T ss_dssp S-------CEEEECCSEEECCSSSCCCCEEEEEBC
T ss_pred C-------EEEEEEEEEEEeCCCCCCeEEEEEEEC
Confidence 6 467899999999999999999999975
No 4
>3lyw_A YBBR family protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.90A {Desulfitobacterium hafniense} PDB: 2kpu_A 2l5n_A
Probab=93.46 E-value=0.4 Score=35.72 Aligned_cols=74 Identities=14% Similarity=0.178 Sum_probs=49.1
Q ss_pred EEEEeEEEEecCCCCccccCeEEEEEecEEEEE--eecCCCC-C--eEEEEccCCCCCCe-EEEeccCCCCCeEEeecCC
Q 026232 148 KVDVPVVFKGVESCPGLKKGGYLKSIRTSLKYL--CPAEHIS-P--KIEVDVSNLDIGDR-VFMSDIEVHPSWKLLSKNE 221 (241)
Q Consensus 148 ~v~VPI~l~G~~~s~Gvk~GG~L~~~~~~I~V~--~lP~~IP-e--~I~VDVs~L~iGd~-i~V~DL~lp~gv~il~~~~ 221 (241)
+++|||.+.|.+. +. .+.....+++|+ +....+- + +..||+|++..|+. +.|+ +.+|.|+++..-.|
T Consensus 4 tytVPv~~~Nlp~--~~----~v~~~~~tV~V~v~G~r~~~~~~di~A~VDLsg~~~G~~~~~V~-v~~P~G~~lv~vsP 76 (90)
T 3lyw_A 4 TLTLSLIAKNTPA--NS----MIMTKLPSVRVKTEGYNPSINVNELFAYVDLSGSEPGEHDYEVK-VEPIPNIKIVEISP 76 (90)
T ss_dssp EEEEEEEEESCCT--TE----EECSCCCEEEEEEEECCTTCCSTTCEEEEECTTCCSEEEEEECE-ECCCTTEEEEEEES
T ss_pred eEEeeEEEeeCCC--Cc----EEecCCCEEEEEEEecCcCCChHHEEEEEECcCCCCCcEeEEEE-EECCCCCEEEEEcc
Confidence 6799999999862 32 333333455544 4332221 1 46799999999974 4455 89999999997677
Q ss_pred CccEEEE
Q 026232 222 KMPLCKI 228 (241)
Q Consensus 222 ~~vV~~V 228 (241)
+.+-..+
T Consensus 77 ~~V~~~~ 83 (90)
T 3lyw_A 77 RVVTLQL 83 (90)
T ss_dssp SEEEEEE
T ss_pred ceEEEEe
Confidence 7665554
No 5
>2l3u_A YBBR family protein; beta strand, figure eight, figure 8, structural genomics, PS biology, protein structure initiative; NMR {Desulfitobacterium hafniense}
Probab=78.90 E-value=1.9 Score=31.80 Aligned_cols=79 Identities=14% Similarity=0.193 Sum_probs=47.9
Q ss_pred EEEeEEEEecCCCCccccCeEEEEEecEEEEEeecC---CC-CC--eEEEEccCCCCCCeEEEeccCCCCCeEEeecCCC
Q 026232 149 VDVPVVFKGVESCPGLKKGGYLKSIRTSLKYLCPAE---HI-SP--KIEVDVSNLDIGDRVFMSDIEVHPSWKLLSKNEK 222 (241)
Q Consensus 149 v~VPI~l~G~~~s~Gvk~GG~L~~~~~~I~V~~lP~---~I-Pe--~I~VDVs~L~iGd~i~V~DL~lp~gv~il~~~~~ 222 (241)
.+|||.+.|.+ .+...-|.-+ .=+|.+++... .+ ++ .+.+|+|++..|..-.-=.+.+|.|+++..-.|.
T Consensus 5 ~~VPV~v~n~~--~~~~v~~~p~--~V~V~v~G~~~~l~~l~~~di~~~vDls~l~~G~~~v~v~v~~P~~~~~v~i~P~ 80 (98)
T 2l3u_A 5 YDLPIVLRNLP--EDLVLEKPLP--EVSVTIRAYPEILNNLTKEQISLWIDATGKAVGEHTVKIYWQLPAGIEMVSIPDV 80 (98)
T ss_dssp CCCSCEEESCC--TTEEESSCCC--CCCCEEECCHHHHTTCCGGGCBCEEECSSCCSBCCEECCCCBCSSSCEEEECCCE
T ss_pred EecCEEEEeCC--CceEEEcCCC--EEEEEEEECHHHhhhCChhhEEEEEEecCCcCceEEEeEEEECCCCcEEEEeCCC
Confidence 35888888874 2333222211 12344444322 11 11 5678999999997433335789999998866777
Q ss_pred ccEEEEEcC
Q 026232 223 MPLCKISAT 231 (241)
Q Consensus 223 ~vV~~V~~~ 231 (241)
.+-++|..-
T Consensus 81 ~V~V~i~e~ 89 (98)
T 2l3u_A 81 TYTLKAKED 89 (98)
T ss_dssp ECCEEECCC
T ss_pred EEEEEEecc
Confidence 777777543
No 6
>2kq1_A BH0266 protein; solution NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Bacillus halodurans}
Probab=75.18 E-value=21 Score=26.90 Aligned_cols=80 Identities=10% Similarity=0.071 Sum_probs=49.2
Q ss_pred CEEEEEEeEEEEecCCCCccccCeEEEEEecEEEE--EeecCC---C---CC--eEEEEccCCCCCC-eEEEeccCCCCC
Q 026232 145 TELKVDVPVVFKGVESCPGLKKGGYLKSIRTSLKY--LCPAEH---I---SP--KIEVDVSNLDIGD-RVFMSDIEVHPS 213 (241)
Q Consensus 145 ~~V~v~VPI~l~G~~~s~Gvk~GG~L~~~~~~I~V--~~lP~~---I---Pe--~I~VDVs~L~iGd-~i~V~DL~lp~g 213 (241)
...-..|||.+.+.+ .|-.+...-.++.| ++.... + ++ ...+|+|+|..|. .+.+.=-.+|+|
T Consensus 8 ~~~~~~VPV~v~~~~------~~~~v~~~p~~V~V~l~G~~~~l~~~~~~~~~i~~~vDLs~l~~G~~~vpv~v~~lp~~ 81 (119)
T 2kq1_A 8 NLSLGELELTVLYDE------ERYDIVEQTETVQVDLEGPRGVLTVFRFARPSYEVFVDLTEAGEGSHTVDVEHRGFPGD 81 (119)
T ss_dssp EEEEEEEEEEEECCT------TTCEEEECCCEEEEEEEECHHHHHHHTTSCCCCEEEEECTTCCBEEEEEECEEESSCTT
T ss_pred eEEEEEeeEEEEECC------CCEEEECCCCEEEEEEEECHHHhhhccccccCEEEEEECccCCCCeEEEEEEEecCCCC
Confidence 344568999999864 23334433344554 443321 1 23 5689999999997 333332248999
Q ss_pred eEEeecCCCccEEEEEcC
Q 026232 214 WKLLSKNEKMPLCKISAT 231 (241)
Q Consensus 214 v~il~~~~~~vV~~V~~~ 231 (241)
++ ....|..+-++|...
T Consensus 82 v~-v~v~P~~V~V~i~~~ 98 (119)
T 2kq1_A 82 LA-VTVEPRMARVQLEER 98 (119)
T ss_dssp SE-EEESCCEEEEEEESC
T ss_pred eE-EEEcCCEEEEEEEEE
Confidence 99 445788888777543
No 7
>2kps_A Uncharacterized protein; beta strand, figure eight, figure 8, structural genomics, PSI-2, protein structure initiative; NMR {Desulfitobacterium hafniense Y51} PDB: 2l3u_A
Probab=58.18 E-value=9.8 Score=28.06 Aligned_cols=72 Identities=15% Similarity=0.248 Sum_probs=43.7
Q ss_pred EEeEEEEecCCCCccccCeEEEEEecEE--EEEeecCCC----CCe--EEEEccCCCCCC-eEEEeccCCCCCeEEeecC
Q 026232 150 DVPVVFKGVESCPGLKKGGYLKSIRTSL--KYLCPAEHI----SPK--IEVDVSNLDIGD-RVFMSDIEVHPSWKLLSKN 220 (241)
Q Consensus 150 ~VPI~l~G~~~s~Gvk~GG~L~~~~~~I--~V~~lP~~I----Pe~--I~VDVs~L~iGd-~i~V~DL~lp~gv~il~~~ 220 (241)
.|||.+.|.+ .+. .+.....++ .+++....| ++. ..+|+|+|..|. .+.+ .+.+|+|+++.+
T Consensus 6 ~VpI~v~nl~--~~~----~v~~~~~~V~V~v~G~~~~l~~l~~~di~a~vDLs~l~~G~~~vpv-~v~lP~gv~vv~-- 76 (98)
T 2kps_A 6 DLPIVLRNLP--EDL----VLEKPLPEVSVTIRAYPEILNNLTKEQISLWIDATGKAVGEHTVKI-YWQLPAGIEMVS-- 76 (98)
T ss_dssp GSCCEECSCC--TTE----EESCCCCCCCCCCCCCHHHHHTCCTTTSBCEECCTTCCSSCEEEEC-CCBCSSCCCCCC--
T ss_pred ecCEEEEeCC--CCe----EEECCCCEEEEEEEECHHHHhhCChhhEEEEEECCCCCCCeEEEeE-EEECCCCEEEEe--
Confidence 4788888874 233 222222334 344443322 333 589999999998 5555 688999999984
Q ss_pred CCccEEEEEc
Q 026232 221 EKMPLCKISA 230 (241)
Q Consensus 221 ~~~vV~~V~~ 230 (241)
...+=++|..
T Consensus 77 ~~~v~vtl~~ 86 (98)
T 2kps_A 77 IPDVTYTLKA 86 (98)
T ss_dssp CCEEEECEEE
T ss_pred cCcEEEEEEE
Confidence 3344444443
No 8
>2nwf_A Ubiquinol-cytochrome C reductase iron-sulfur SUBU; rieske [2Fe-2S] ISP, oxidoreductase; HET: GOL; 1.10A {Rhodobacter sphaeroides} PDB: 2nuk_A 2nve_A 2num_A 2nvg_A 2nvf_A
Probab=40.47 E-value=16 Score=28.73 Aligned_cols=19 Identities=32% Similarity=0.329 Sum_probs=17.0
Q ss_pred eEEEEccCCCCCCeEEEec
Q 026232 189 KIEVDVSNLDIGDRVFMSD 207 (241)
Q Consensus 189 ~I~VDVs~L~iGd~i~V~D 207 (241)
.++||+|.|+.|+.++|.=
T Consensus 3 ~~~vd~s~l~~g~~~~v~w 21 (141)
T 2nwf_A 3 SIFVDVSSVEPGVQLTVKF 21 (141)
T ss_dssp CEEEECTTCCTTEEEEEEE
T ss_pred CEEEecccCCCCCEEEEEE
Confidence 6899999999999998863
No 9
>2lyx_A Uncharacterized protein YQZG; PF13028, DUF3889, structural genomics, unknown function; NMR {Bacillus subtilis subsp}
Probab=35.01 E-value=82 Score=23.02 Aligned_cols=36 Identities=11% Similarity=0.218 Sum_probs=27.1
Q ss_pred eEEEEEEcCCCCccccccceeeeeeeeeeccCCCceeEEEEEE
Q 026232 98 TTFPLQIRAGSGSSVLLDSGKVLPIKVHRDEETGRILNLVFVW 140 (241)
Q Consensus 98 ~v~~L~i~~g~~~~~~~~~~~vlikevQ~hpv~~~ilHvDF~~ 140 (241)
..|.|-|..| .+.-.+.-+|-+||.|++++-++|.+
T Consensus 49 E~Fklwl~e~-------~kefgV~V~I~f~p~T~kv~sI~~~E 84 (87)
T 2lyx_A 49 KQYHLTLREG-------SKEFGVFVTISFDPYSQKVNKIAILE 84 (87)
T ss_dssp EEEEEEEEET-------TEEEEEEEEEEECTTTCCEEEEEEEE
T ss_pred EEEEEEEEeC-------CEEEEEEEEEEEECCCCeEEEEEEEE
Confidence 4588888633 23345556899999999999999975
No 10
>1q7l_B Aminoacylase-1; catalysis, enzyme dimerization, site- directed mutagenesis, structure comparison, zinc, hydrolase; 1.40A {Homo sapiens} SCOP: c.56.5.4
Probab=32.07 E-value=40 Score=23.40 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=21.4
Q ss_pred EEcCCCCChHHHHHHHCCCccEEEeCCC
Q 026232 32 IPRECTGSRVSARDRSQGRIPAVVFAQD 59 (241)
Q Consensus 32 ~~R~~~Gk~~~rrLRr~G~VPaViYG~~ 59 (241)
.+-...|...+|.+++.| +|++.||.+
T Consensus 19 ~~~~~~g~TDar~~~~~g-ip~v~fGPg 45 (88)
T 1q7l_B 19 EPEIMPAAGDNRYIRAVG-VPALGFSPM 45 (88)
T ss_dssp EEEECCSCSHHHHHHHTT-CCEEEECCC
T ss_pred EeeeeceeCcHHHHHHcC-CCEEEECCC
Confidence 344457788899999886 899999983
No 11
>1bdf_A RNA polymerase alpha subunit; nucleotidyltransferase, assemble; 2.50A {Escherichia coli} SCOP: d.74.3.1 d.181.1.1
Probab=23.97 E-value=40 Score=28.75 Aligned_cols=27 Identities=15% Similarity=0.340 Sum_probs=23.9
Q ss_pred eEEEeccCCCCCeEEeecCCCccEEEEEc
Q 026232 202 RVFMSDIEVHPSWKLLSKNEKMPLCKISA 230 (241)
Q Consensus 202 ~i~V~DL~lp~gv~il~~~~~~vV~~V~~ 230 (241)
.++.+||..|++++++ +++..||++..
T Consensus 109 ~VtA~Di~~~~~v~iv--npd~~IatL~~ 135 (235)
T 1bdf_A 109 PVTAADITHDGDVEIV--KPQHVICHLTD 135 (235)
T ss_dssp EEEGGGBCCCSSCEES--CTTCEEEEECS
T ss_pred EEEhHhCCCCCCCEEc--CCCeEEEEECC
Confidence 6999999999999998 47899999965
No 12
>2a6h_A DNA-directed RNA polymerase alpha chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: d.74.3.1 d.181.1.1 PDB: 1smy_A* 1zyr_A* 1iw7_A* 2a69_A* 2a6e_A 2a68_A* 2be5_A* 2cw0_A 2o5i_A 2o5j_A* 2ppb_A* 3aoh_A* 3aoi_A* 3dxj_A* 3eql_A* 1i6v_A* 1ynj_A* 1l9z_A 1l9u_A* 1ynn_A* ...
Probab=23.53 E-value=57 Score=29.13 Aligned_cols=28 Identities=11% Similarity=0.194 Sum_probs=24.4
Q ss_pred CeEEEeccCCCCCeEEeecCCCccEEEEEc
Q 026232 201 DRVFMSDIEVHPSWKLLSKNEKMPLCKISA 230 (241)
Q Consensus 201 d~i~V~DL~lp~gv~il~~~~~~vV~~V~~ 230 (241)
..++.+||..|++++++ +++..||++..
T Consensus 107 ~~VtA~Di~~~~~v~iv--npd~~IatL~~ 134 (315)
T 2a6h_A 107 KEVKARDFLPVADVEIM--NPDLHIATLEE 134 (315)
T ss_dssp CEEEGGGSCCCTTEEES--CTTCEEEEBCS
T ss_pred eeEEhhhCCcCCCcEEc--CCCeEEEEECC
Confidence 47999999999999998 47899999864
No 13
>3lu0_A DNA-directed RNA polymerase subunit alpha; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_A
Probab=22.29 E-value=33 Score=30.98 Aligned_cols=38 Identities=16% Similarity=0.315 Sum_probs=29.9
Q ss_pred CCeEEEEccCCCCCCeEEEeccCCCCCeEEeecCCCccEEEEE
Q 026232 187 SPKIEVDVSNLDIGDRVFMSDIEVHPSWKLLSKNEKMPLCKIS 229 (241)
Q Consensus 187 Pe~I~VDVs~L~iGd~i~V~DL~lp~gv~il~~~~~~vV~~V~ 229 (241)
|..+.+++.+ . ..++.+||..|++++++ +++..||++.
T Consensus 97 ~~~~~L~~~G--p-~~VtA~DI~~~~~veiv--npd~~IatL~ 134 (329)
T 3lu0_A 97 EVILTLNKSG--I-GPVTAADITHDGDVEIV--KPQHVICHLT 134 (329)
T ss_dssp CEEEEECCCS--S-SCEETTSSCCCSSEECS--CTTCEEECBC
T ss_pred eEEEEEEEeC--C-eEEEeeeeccCCCCEEe--CCCcEEEEEc
Confidence 4556666654 2 37999999999999997 4789999987
Done!