BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>026233
MNCIQATSAGKPCVHLPNRIRLVCERNTTRRTSLKLNATAYNHGLLALKCRQKNTVACSL
GGKDKSDDKGAPWQDFSKAMGNLGKGQSIEDVLRQQIQKQEFYDGDGGKSPPRRGGGGRG
EGGSGESGDEGVSGIIDETVQVVLATIGFILLYIYIIAGEELTKLGKDYIKYLLGGSKSV
RLSNAMDALESFWKTLSDNKLVYDKYWLEKEILNTTTWFDGPEKYRRMLRSYRERSADEE
S

High Scoring Gene Products

Symbol, full name Information P value
AT2G43630 protein from Arabidopsis thaliana 5.3e-40
AT3G59640 protein from Arabidopsis thaliana 8.4e-28

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  026233
        (241 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2044039 - symbol:AT2G43630 "AT2G43630" species...   426  5.3e-40   1
TAIR|locus:2097523 - symbol:AT3G59640 "AT3G59640" species...   216  8.4e-28   2


>TAIR|locus:2044039 [details] [associations]
            symbol:AT2G43630 "AT2G43630" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM;IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0009535 "chloroplast
            thylakoid membrane" evidence=IDA] [GO:0006457 "protein folding"
            evidence=RCA] [GO:0009408 "response to heat" evidence=RCA]
            [GO:0009644 "response to high light intensity" evidence=RCA]
            [GO:0034976 "response to endoplasmic reticulum stress"
            evidence=RCA] [GO:0042542 "response to hydrogen peroxide"
            evidence=RCA] [GO:0009536 "plastid" evidence=IDA] GO:GO:0005634
            EMBL:CP002685 GO:GO:0009941 GO:GO:0009535 UniGene:At.20529
            EMBL:AY065451 EMBL:AY096466 IPI:IPI00528544 RefSeq:NP_850396.1
            PRIDE:Q8VYY8 EnsemblPlants:AT2G43630.1 GeneID:818965
            KEGG:ath:AT2G43630 TAIR:At2g43630 HOGENOM:HOG000006260
            InParanoid:Q8VYY8 OMA:YPARITR PhylomeDB:Q8VYY8
            ProtClustDB:CLSN2684899 Genevestigator:Q8VYY8 Uniprot:Q8VYY8
        Length = 274

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 104/248 (41%), Positives = 142/248 (57%)

Query:    17 PNRIRLVCERNTTR-----RTSLKLNATA-----------YNHGLLALKCRQKNTVACSL 60
             PN I  V  R++ R     RTS  L ATA           +   L   K +Q + V C  
Sbjct:    21 PNCISSVPIRSSVRFDHFPRTSFTLRATAAVSTQFSPLLDHRRRLPTGKSKQSSAV-CLF 79

Query:    61 GGKDKSD--DKGAPWQDFSKAMGNLGKGQSIEDVLRQQIQKQEFYXXXXXXX-------X 111
             GGKDK D  D+ +PW+   KAMG     +S+ED+LR+QIQK++FY               
Sbjct:    80 GGKDKPDGSDEISPWKAIEKAMGK----KSVEDMLREQIQKKDFYDTDSGGNMPPRGGGS 135

Query:   112 XXXXXXXXXXXXXXXXXXXXVSGIIDETVQVVLATIGFILLYIYIIAGEELTKLGKDYIK 171
                                 ++GI DET+QVVLAT+GFI LY YII GEEL KL +DYI+
Sbjct:   136 GGGGGNGEERPEGSGGEDGGLAGIADETLQVVLATLGFIFLYTYIITGEELVKLARDYIR 195

Query:   172 YLLGGSKSVRLSNAMDALESFWKTLSDNKLVYDKYWLEKEILNTTTWFDGPEKYRRMLRS 231
             +L+G  K+VRL+ AMD+   F + +S  + VYD+YWLEK I+NT TW+D PEKYRR++++
Sbjct:   196 FLMGRPKTVRLTRAMDSWNGFLEKMSRQR-VYDEYWLEKAIINTPTWYDSPEKYRRVIKA 254

Query:   232 YRERSADE 239
             Y + ++DE
Sbjct:   255 YVDSNSDE 262


>TAIR|locus:2097523 [details] [associations]
            symbol:AT3G59640 "AT3G59640" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AL138659
            HOGENOM:HOG000006260 ProtClustDB:CLSN2684899 EMBL:AF386940
            EMBL:BT001173 IPI:IPI00516701 PIR:T49305 RefSeq:NP_001078314.1
            RefSeq:NP_191523.1 UniGene:At.20729 PaxDb:Q9M1A4 PRIDE:Q9M1A4
            EnsemblPlants:AT3G59640.1 EnsemblPlants:AT3G59640.2 GeneID:825133
            KEGG:ath:AT3G59640 TAIR:At3g59640 eggNOG:NOG326390
            InParanoid:Q9M1A4 OMA:ARDYIRY PhylomeDB:Q9M1A4 ArrayExpress:Q9M1A4
            Genevestigator:Q9M1A4 Uniprot:Q9M1A4
        Length = 246

 Score = 216 (81.1 bits), Expect = 8.4e-28, Sum P(2) = 8.4e-28
 Identities = 42/73 (57%), Positives = 56/73 (76%)

Query:   137 DETVQVVLATIGFILLYIYIIAGEELTKLGKDYIKYLLGGSKSVRLSNAMDALESFWKTL 196
             DET+QVVLAT+GFI LY YII GEEL +L +DYI+YL+G  KSVRL+  M+    F++ +
Sbjct:   155 DETLQVVLATLGFIFLYFYIINGEELFRLARDYIRYLIGRPKSVRLTRVMEGWSRFFEKM 214

Query:   197 SDNKLVYDKYWLE 209
             S  K VY++YWL+
Sbjct:   215 SRKK-VYNEYWLK 226

 Score = 110 (43.8 bits), Expect = 8.4e-28, Sum P(2) = 8.4e-28
 Identities = 25/58 (43%), Positives = 38/58 (65%)

Query:    49 KCR--QKNTVACSLGGKDKSD---DKGAPWQDFSKAMGNLGKGQSIEDVLRQQIQKQE 101
             +CR  ++  V C LGGKDKS+   +  + W+   KAMG     +S+ED+LR+QIQK++
Sbjct:    64 RCRNQRQGPVVCLLGGKDKSNGSNELSSTWEAIEKAMGK----KSVEDMLREQIQKKD 117


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.134   0.396    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      241       213   0.00084  112 3  11 22  0.38    33
                                                     31  0.49    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  603 (64 KB)
  Total size of DFA:  178 KB (2103 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.80u 0.13s 15.93t   Elapsed:  00:00:01
  Total cpu time:  15.80u 0.13s 15.93t   Elapsed:  00:00:01
  Start:  Fri May 10 04:00:38 2013   End:  Fri May 10 04:00:39 2013

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