BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026233
         (241 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q5H2Y1|MURD_XANOR UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Xanthomonas
           oryzae pv. oryzae (strain KACC10331 / KXO85) GN=murD
           PE=3 SV=1
          Length = 468

 Score = 35.8 bits (81), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 5/67 (7%)

Query: 16  LPNRIRLVCERNTTRRTSLKLNATAYNHGLLALKCRQKNTVACSLGGKDKSDDKGAPWQD 75
           LPNR++++   +     +  ++ T Y   L AL C  +  VA  +GG D+  D    W D
Sbjct: 310 LPNRLQVLGSVDGISYVNDSISTTPYA-SLAALACFAQRRVALLVGGHDRGLD----WHD 364

Query: 76  FSKAMGN 82
           F++ M  
Sbjct: 365 FARHMAQ 371


>sp|Q2P5V2|MURD_XANOM UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Xanthomonas
           oryzae pv. oryzae (strain MAFF 311018) GN=murD PE=3 SV=1
          Length = 468

 Score = 35.8 bits (81), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 5/67 (7%)

Query: 16  LPNRIRLVCERNTTRRTSLKLNATAYNHGLLALKCRQKNTVACSLGGKDKSDDKGAPWQD 75
           LPNR++++   +     +  ++ T Y   L AL C  +  VA  +GG D+  D    W D
Sbjct: 310 LPNRLQVLGSVDGISYVNDSISTTPYA-SLAALACFAQRRVALLVGGHDRGLD----WHD 364

Query: 76  FSKAMGN 82
           F++ M  
Sbjct: 365 FARHMAQ 371


>sp|Q8PII9|MURD_XANAC UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Xanthomonas
           axonopodis pv. citri (strain 306) GN=murD PE=3 SV=1
          Length = 468

 Score = 35.4 bits (80), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 5/67 (7%)

Query: 16  LPNRIRLVCERNTTRRTSLKLNATAYNHGLLALKCRQKNTVACSLGGKDKSDDKGAPWQD 75
           LPNR++L+   +     +  ++ T +   L AL C  +  VA  +GG D+  D    W D
Sbjct: 310 LPNRLQLLGSVDGISYVNDSISTTPHA-SLAALACFARRRVALLVGGHDRGLD----WHD 364

Query: 76  FSKAMGN 82
           F++ M  
Sbjct: 365 FAQQMAQ 371


>sp|Q3BR29|MURD_XANC5 UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Xanthomonas
           campestris pv. vesicatoria (strain 85-10) GN=murD PE=3
           SV=1
          Length = 468

 Score = 34.7 bits (78), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 5/66 (7%)

Query: 16  LPNRIRLVCERNTTRRTSLKLNATAYNHGLLALKCRQKNTVACSLGGKDKSDDKGAPWQD 75
           LPNR++L+   +     +  ++ T +   L AL C  +  VA  +GG D+  D    W D
Sbjct: 310 LPNRLQLLGSVDGISYVNDSISTTPHA-SLAALACFAQRRVALLVGGHDRGLD----WHD 364

Query: 76  FSKAMG 81
           F++ M 
Sbjct: 365 FAQQMA 370


>sp|A7X8B7|PRGR_GORGO Progesterone receptor OS=Gorilla gorilla gorilla GN=PGR PE=3 SV=1
          Length = 933

 Score = 32.0 bits (71), Expect = 4.3,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 85  KGQSIEDVLRQQIQKQEFYDGDGGKSPPRRGGGGRGEGGSGESGDEGVSGIIDETVQVVL 144
           +GQ   D   Q   +Q   D +G  S   R    RG GGS  S  E  SG++D  ++ +L
Sbjct: 65  QGQDPSDEKTQD--QQSLSDVEGAYS---RAEATRGAGGSSSSPPEKDSGLLDSVLETLL 119

Query: 145 ATIG 148
           A  G
Sbjct: 120 APSG 123


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.135    0.402 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,224,018
Number of Sequences: 539616
Number of extensions: 4534761
Number of successful extensions: 22593
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 74
Number of HSP's that attempted gapping in prelim test: 20754
Number of HSP's gapped (non-prelim): 1619
length of query: 241
length of database: 191,569,459
effective HSP length: 114
effective length of query: 127
effective length of database: 130,053,235
effective search space: 16516760845
effective search space used: 16516760845
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)