Query 026233
Match_columns 241
No_of_seqs 32 out of 34
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 05:22:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026233.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026233hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG4907 Predicted membrane pro 80.7 1.1 2.4E-05 45.3 2.3 6 94-99 538-543 (595)
2 PRK10930 FtsH protease regulat 75.8 10 0.00023 36.8 7.3 13 87-99 39-51 (419)
3 PLN03138 Protein TOC75; Provis 75.0 2.5 5.4E-05 44.5 3.0 11 134-144 105-115 (796)
4 PF07655 Secretin_N_2: Secreti 62.0 13 0.00028 28.9 3.9 16 133-148 69-84 (98)
5 PRK10590 ATP-dependent RNA hel 59.9 9.4 0.0002 36.1 3.3 9 74-82 358-366 (456)
6 PF06679 DUF1180: Protein of u 57.5 29 0.00063 30.2 5.6 23 134-156 92-114 (163)
7 KOG3973 Uncharacterized conser 51.5 12 0.00026 37.1 2.6 6 25-30 311-316 (465)
8 PHA00370 III attachment protei 47.6 21 0.00046 33.9 3.5 7 73-79 74-80 (297)
9 PF09451 ATG27: Autophagy-rela 46.8 53 0.0012 29.6 5.8 14 142-156 207-220 (268)
10 KOG0921 Dosage compensation co 46.0 15 0.00033 40.3 2.5 14 52-65 1183-1196(1282)
11 COG4371 Predicted membrane pro 45.1 36 0.00077 32.7 4.5 7 213-219 191-197 (334)
12 PHA00370 III attachment protei 41.9 27 0.00059 33.2 3.3 7 41-47 50-56 (297)
13 PLN03134 glycine-rich RNA-bind 39.1 5.5 0.00012 32.7 -1.5 8 70-77 87-94 (144)
14 PTZ00146 fibrillarin; Provisio 37.0 32 0.0007 32.3 3.0 16 221-236 215-230 (293)
15 KOG3915 Transcription regulato 35.9 36 0.00078 35.0 3.3 27 154-180 189-218 (641)
16 PF12301 CD99L2: CD99 antigen 35.5 66 0.0014 28.1 4.4 11 144-154 126-136 (169)
17 PF09972 DUF2207: Predicted me 34.9 1.7E+02 0.0036 27.0 7.1 27 172-198 449-475 (511)
18 KOG3449 60S acidic ribosomal p 34.1 1.1E+02 0.0024 25.6 5.3 33 75-108 38-70 (112)
19 KOG3074 Transcriptional regula 34.1 29 0.00062 32.6 2.1 12 223-234 155-166 (263)
20 PF12300 DUF3628: Protein of u 34.0 71 0.0015 28.6 4.4 40 88-127 37-80 (180)
21 TIGR02877 spore_yhbH sporulati 33.1 49 0.0011 32.3 3.6 18 132-149 112-129 (371)
22 PF12575 DUF3753: Protein of u 32.7 39 0.00084 26.3 2.3 20 124-143 12-31 (72)
23 PF02957 TT_ORF2: TT viral ORF 32.6 68 0.0015 25.5 3.8 14 134-147 105-118 (122)
24 PF04801 Sin_N: Sin-like prote 31.4 26 0.00057 33.2 1.5 24 160-185 332-355 (421)
25 KOG3915 Transcription regulato 31.4 39 0.00084 34.8 2.6 21 164-184 221-241 (641)
26 PRK05865 hypothetical protein; 29.9 2.1E+02 0.0045 30.7 7.7 25 213-237 590-614 (854)
27 PRK07772 single-stranded DNA-b 28.8 55 0.0012 28.8 2.9 11 52-62 72-82 (186)
28 PF14584 DUF4446: Protein of u 26.9 3E+02 0.0065 23.5 6.9 57 142-199 5-68 (151)
29 PRK09174 F0F1 ATP synthase sub 26.6 94 0.002 27.3 4.0 16 141-156 55-70 (204)
30 PF03954 Lectin_N: Hepatic lec 26.5 1.4E+02 0.003 25.8 4.8 45 142-201 35-79 (138)
31 PF07125 DUF1378: Protein of u 25.6 1.3E+02 0.0029 22.7 4.0 8 169-176 16-23 (59)
32 PF09323 DUF1980: Domain of un 24.9 94 0.002 26.3 3.5 33 142-175 5-37 (182)
33 COG1314 SecG Preprotein transl 24.2 1.8E+02 0.004 22.8 4.8 22 136-157 47-68 (86)
34 PRK06241 phosphoenolpyruvate s 23.9 55 0.0012 34.5 2.3 23 213-235 592-614 (871)
35 TIGR01659 sex-lethal sex-letha 23.5 76 0.0017 29.9 3.0 6 76-81 248-253 (346)
36 PF05611 DUF780: Caenorhabditi 22.9 78 0.0017 24.6 2.4 7 102-108 32-38 (71)
37 PF13703 PepSY_TM_2: PepSY-ass 22.0 1.7E+02 0.0038 21.8 4.1 50 140-193 16-67 (88)
38 PRK05325 hypothetical protein; 21.6 92 0.002 30.7 3.2 18 132-149 100-117 (401)
39 TIGR02916 PEP_his_kin putative 21.4 3.6E+02 0.0078 26.8 7.2 61 134-199 257-317 (679)
40 PF14992 TMCO5: TMCO5 family 21.2 1.3E+02 0.0028 28.5 4.0 32 134-165 212-250 (280)
41 PF01102 Glycophorin_A: Glycop 21.2 86 0.0019 26.1 2.5 19 139-157 70-88 (122)
42 PF09441 Abp2: ARS binding pro 20.9 83 0.0018 28.2 2.5 35 179-216 100-136 (175)
43 TIGR01431 adm_rel adenosine de 20.9 2.1E+02 0.0045 28.4 5.5 63 128-196 411-478 (479)
44 PRK11448 hsdR type I restricti 20.7 99 0.0021 33.9 3.5 47 159-210 1019-1069(1123)
45 PTZ00009 heat shock 70 kDa pro 20.6 1.5E+02 0.0033 30.0 4.6 7 75-81 578-584 (653)
46 PRK08296 hypothetical protein; 20.5 2.3E+02 0.0049 29.3 5.8 22 213-234 298-319 (603)
47 PF07234 DUF1426: Protein of u 20.0 1.2E+02 0.0026 25.4 3.1 30 146-175 22-51 (117)
No 1
>COG4907 Predicted membrane protein [Function unknown]
Probab=80.73 E-value=1.1 Score=45.26 Aligned_cols=6 Identities=17% Similarity=0.230 Sum_probs=3.0
Q ss_pred HHHHHh
Q 026233 94 RQQIQK 99 (241)
Q Consensus 94 ~~qI~K 99 (241)
+++|+-
T Consensus 538 ~e~ikd 543 (595)
T COG4907 538 MEIIKD 543 (595)
T ss_pred HhHhcc
Confidence 455554
No 2
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=75.83 E-value=10 Score=36.85 Aligned_cols=13 Identities=23% Similarity=0.593 Sum_probs=7.7
Q ss_pred CCHHHHHHHHHHh
Q 026233 87 QSIEDVLRQQIQK 99 (241)
Q Consensus 87 ~SieD~L~~qI~K 99 (241)
-.++|+|++--+|
T Consensus 39 pdl~~~~~~~~~~ 51 (419)
T PRK10930 39 PDLDDIFRKLSKK 51 (419)
T ss_pred CCHHHHHHHHHHH
Confidence 3477777764444
No 3
>PLN03138 Protein TOC75; Provisional
Probab=75.03 E-value=2.5 Score=44.47 Aligned_cols=11 Identities=0% Similarity=-0.375 Sum_probs=6.7
Q ss_pred cchHHHHHHHH
Q 026233 134 GIIDETVQVVL 144 (241)
Q Consensus 134 ~~~dE~~QvvL 144 (241)
+||-+..+..-
T Consensus 105 ~~~~~~~~~~~ 115 (796)
T PLN03138 105 RFWLRLFAPAD 115 (796)
T ss_pred chhhhhcChhh
Confidence 57877655443
No 4
>PF07655 Secretin_N_2: Secretin N-terminal domain; InterPro: IPR011514 This is a short domain found in bacterial type II/III secretory system proteins. The architecture of these proteins suggests that this family may be functionally analogous to IPR005644 from INTERPRO.; GO: 0009297 pilus assembly, 0019867 outer membrane
Probab=61.98 E-value=13 Score=28.91 Aligned_cols=16 Identities=19% Similarity=0.356 Sum_probs=12.8
Q ss_pred ccchHHHHHHHHHHHH
Q 026233 133 SGIIDETVQVVLATIG 148 (241)
Q Consensus 133 ~~~~dE~~QvvLAtlg 148 (241)
.+||+|....|-++|+
T Consensus 69 ~dfW~~L~~~l~~ilg 84 (98)
T PF07655_consen 69 SDFWEDLQKTLQAILG 84 (98)
T ss_pred CchHHHHHHHHHHHhC
Confidence 3899998888887764
No 5
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=59.93 E-value=9.4 Score=36.06 Aligned_cols=9 Identities=22% Similarity=0.442 Sum_probs=5.1
Q ss_pred hhHHHHhhc
Q 026233 74 QDFSKAMGN 82 (241)
Q Consensus 74 ksLEkAmg~ 82 (241)
+.+|+-+..
T Consensus 358 ~~ie~~l~~ 366 (456)
T PRK10590 358 RDIEKLLKK 366 (456)
T ss_pred HHHHHHhcC
Confidence 466666553
No 6
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=57.53 E-value=29 Score=30.21 Aligned_cols=23 Identities=17% Similarity=0.434 Sum_probs=18.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHH
Q 026233 134 GIIDETVQVVLATIGFILLYIYI 156 (241)
Q Consensus 134 ~~~dE~~QvvLAtlgfIllYI~I 156 (241)
.+..-++=|+.++-++|++|++|
T Consensus 92 ~~l~R~~~Vl~g~s~l~i~yfvi 114 (163)
T PF06679_consen 92 PMLKRALYVLVGLSALAILYFVI 114 (163)
T ss_pred cchhhhHHHHHHHHHHHHHHHHH
Confidence 56777777888888899999887
No 7
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=51.46 E-value=12 Score=37.07 Aligned_cols=6 Identities=17% Similarity=-0.053 Sum_probs=2.4
Q ss_pred ccCccc
Q 026233 25 ERNTTR 30 (241)
Q Consensus 25 ~~~~~p 30 (241)
++.|.|
T Consensus 311 E~~ppp 316 (465)
T KOG3973|consen 311 EMVPPP 316 (465)
T ss_pred cCCCCC
Confidence 333433
No 8
>PHA00370 III attachment protein
Probab=47.60 E-value=21 Score=33.91 Aligned_cols=7 Identities=29% Similarity=0.748 Sum_probs=2.9
Q ss_pred hhhHHHH
Q 026233 73 WQDFSKA 79 (241)
Q Consensus 73 ~ksLEkA 79 (241)
|+..-+|
T Consensus 74 W~P~g~~ 80 (297)
T PHA00370 74 WKPTGSA 80 (297)
T ss_pred eeecccc
Confidence 5533333
No 9
>PF09451 ATG27: Autophagy-related protein 27; InterPro: IPR018939 Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. There are more than 25 AuTophaGy-related (ATG) genes that are essential for autophagy, although it is still not known how the autophagosome is made. Atg9 is a potential membrane carrier to deliver lipids that are used to form the vesicle. Atg27 is another transmembrane protein, and is a cycling protein []. It acts as an effector of VPS34 phosphatidylinositol 3-phosphate kinase signalling and regulates the cytoplasm to vacuole transport (Cvt) vesicle formation. It is also required for autophagy-dependent cycling of ATG9.
Probab=46.84 E-value=53 Score=29.56 Aligned_cols=14 Identities=7% Similarity=0.256 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHH
Q 026233 142 VVLATIGFILLYIYI 156 (241)
Q Consensus 142 vvLAtlgfIllYI~I 156 (241)
+++++|+| ++||.+
T Consensus 207 ~i~~~l~~-~~Y~i~ 220 (268)
T PF09451_consen 207 FIILFLFL-AAYLIF 220 (268)
T ss_pred HHHHHHHH-HHHhhh
Confidence 45555554 666655
No 10
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=45.95 E-value=15 Score=40.31 Aligned_cols=14 Identities=21% Similarity=0.264 Sum_probs=8.7
Q ss_pred CCCceEEEeCCCCC
Q 026233 52 QKNTVACSLGGKDK 65 (241)
Q Consensus 52 ~~~~~vCl~gGKg~ 65 (241)
||+...+.-||.|.
T Consensus 1183 RRGgssysgGGYGg 1196 (1282)
T KOG0921|consen 1183 RRGGSSYSGGGYGG 1196 (1282)
T ss_pred ccCCCCCCCCCcCC
Confidence 56667777766543
No 11
>COG4371 Predicted membrane protein [Function unknown]
Probab=45.13 E-value=36 Score=32.67 Aligned_cols=7 Identities=14% Similarity=0.558 Sum_probs=3.3
Q ss_pred cCCCccc
Q 026233 213 LNTTTWF 219 (241)
Q Consensus 213 ~~~ptww 219 (241)
+-.|..|
T Consensus 191 LRHPEyW 197 (334)
T COG4371 191 LRHPEYW 197 (334)
T ss_pred HcCCcee
Confidence 3345555
No 12
>PHA00370 III attachment protein
Probab=41.89 E-value=27 Score=33.18 Aligned_cols=7 Identities=14% Similarity=0.121 Sum_probs=3.0
Q ss_pred ccccchh
Q 026233 41 YNHGLLA 47 (241)
Q Consensus 41 ~~~~~~~ 47 (241)
|.-|++-
T Consensus 50 ~eGC~Y~ 56 (297)
T PHA00370 50 YEGCEYE 56 (297)
T ss_pred ecCeEEE
Confidence 3444443
No 13
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=39.13 E-value=5.5 Score=32.71 Aligned_cols=8 Identities=38% Similarity=0.356 Sum_probs=3.2
Q ss_pred CCchhhHH
Q 026233 70 GAPWQDFS 77 (241)
Q Consensus 70 ~~a~ksLE 77 (241)
+++-+||+
T Consensus 87 e~A~~Al~ 94 (144)
T PLN03134 87 GAATAAIS 94 (144)
T ss_pred HHHHHHHH
Confidence 33334443
No 14
>PTZ00146 fibrillarin; Provisional
Probab=37.03 E-value=32 Score=32.26 Aligned_cols=16 Identities=0% Similarity=-0.108 Sum_probs=8.4
Q ss_pred ChHHHHHHHHHhcccC
Q 026233 221 GPEKYRRMLRSYRERS 236 (241)
Q Consensus 221 ~p~k~~~~~~~~~~~~ 236 (241)
+++.+..-++.+|+++
T Consensus 215 q~~il~~na~r~LKpG 230 (293)
T PTZ00146 215 QARIVALNAQYFLKNG 230 (293)
T ss_pred hHHHHHHHHHHhccCC
Confidence 3334444455567765
No 15
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=35.95 E-value=36 Score=35.00 Aligned_cols=27 Identities=37% Similarity=0.610 Sum_probs=20.4
Q ss_pred HHHhcchhHHHhhhh---hHhHhhcCccch
Q 026233 154 IYIIAGEELTKLGKD---YIKYLLGGSKSV 180 (241)
Q Consensus 154 I~Ii~GeEL~~LarD---yikYll~G~rsv 180 (241)
-++|.|+||+.|-.- ++|.|++|--||
T Consensus 189 sF~i~g~emiCLPQafdlFLKhlVGGLHTV 218 (641)
T KOG3915|consen 189 SFTIEGCELICLPQAFDLFLKHLVGGLHTV 218 (641)
T ss_pred EEEecCceEEecHHHHHHHHHHHhchHHHH
Confidence 357899999887443 577788988776
No 16
>PF12301 CD99L2: CD99 antigen like protein 2; InterPro: IPR022078 This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum.
Probab=35.51 E-value=66 Score=28.15 Aligned_cols=11 Identities=36% Similarity=0.637 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 026233 144 LATIGFILLYI 154 (241)
Q Consensus 144 LAtlgfIllYI 154 (241)
.|.||-|--||
T Consensus 126 valvGAvsSyi 136 (169)
T PF12301_consen 126 VALVGAVSSYI 136 (169)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 17
>PF09972 DUF2207: Predicted membrane protein (DUF2207); InterPro: IPR018702 This domain has no known function.
Probab=34.87 E-value=1.7e+02 Score=26.95 Aligned_cols=27 Identities=15% Similarity=0.219 Sum_probs=21.7
Q ss_pred HhhcCccchhhhHHHHHHHHHHHHhhh
Q 026233 172 YLLGGSKSVRLSNAMDALESFWKTLSD 198 (241)
Q Consensus 172 Yll~G~rsvRLkrAm~~W~~f~~~~t~ 198 (241)
+-+-+.+|..-.+.+.+|..|-+-+.+
T Consensus 449 ~~~~~~~T~~G~~~~~~~~gfr~~L~d 475 (511)
T PF09972_consen 449 YKVMPRRTPEGAELYAQWKGFRRYLAD 475 (511)
T ss_pred hhhccccchhHHHHHHHHHHHHHHHhh
Confidence 344577999999999999999888833
No 18
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=34.10 E-value=1.1e+02 Score=25.62 Aligned_cols=33 Identities=21% Similarity=0.370 Sum_probs=23.4
Q ss_pred hHHHHhhccCCCCCHHHHHHHHHHhhhcccCCCC
Q 026233 75 DFSKAMGNLGKGQSIEDVLRQQIQKQEFYDGDGG 108 (241)
Q Consensus 75 sLEkAmg~~Kk~~SieD~L~~qI~K~e~~~GG~G 108 (241)
.+++-+... ++++|+|+.-+=++|.-....||+
T Consensus 38 ~i~~visel-~GK~i~ElIA~G~eklAsvpsGGa 70 (112)
T KOG3449|consen 38 RINLVLSEL-KGKDIEELIAAGREKLASVPSGGA 70 (112)
T ss_pred HHHHHHHHh-cCCCHHHHHHHhHHHHhcCCCCCc
Confidence 355556665 467999999999999955554444
No 19
>KOG3074 consensus Transcriptional regulator of the PUR family, single-stranded-DNA-binding [Transcription]
Probab=34.08 E-value=29 Score=32.63 Aligned_cols=12 Identities=25% Similarity=0.418 Sum_probs=8.1
Q ss_pred HHHHHHHHHhcc
Q 026233 223 EKYRRMLRSYRE 234 (241)
Q Consensus 223 ~k~~~~~~~~~~ 234 (241)
..||++|-+|+.
T Consensus 155 aEfrdaLaelle 166 (263)
T KOG3074|consen 155 AEFRDALAELLE 166 (263)
T ss_pred HHHHHHHHHHHH
Confidence 457777777764
No 20
>PF12300 DUF3628: Protein of unknown function (DUF3628); InterPro: IPR022077 Proteins in this entry are DEAD Box RhlB RNA Helicases found in Xanthomonadaceae bacteria.; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=34.01 E-value=71 Score=28.58 Aligned_cols=40 Identities=35% Similarity=0.549 Sum_probs=17.9
Q ss_pred CHHHHH---HHHHHhhhcccCCCCCCCCCCCCCC-CCCCCCCCC
Q 026233 88 SIEDVL---RQQIQKQEFYDGDGGKSPPRRGGGG-RGEGGSGES 127 (241)
Q Consensus 88 SieD~L---~~qI~K~e~~~GG~GGn~~~~GGgG-Gggg~sG~S 127 (241)
||-++. ++|-.-.|+--||+-+.++++.|+| |+|..+|.+
T Consensus 37 SVG~IfreAReqraA~E~RRGggRsg~G~RsG~~~g~G~R~G~~ 80 (180)
T PF12300_consen 37 SVGTIFREAREQRAADEQRRGGGRSGPGGRSGSGGGGGRRSGAS 80 (180)
T ss_pred hHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCccCCC
Confidence 544444 4444444544455443333444443 434555544
No 21
>TIGR02877 spore_yhbH sporulation protein YhbH. This protein family, typified by YhbH in Bacillus subtilis, is found in nearly every endospore-forming bacterium and in no other genome (but note that the trusted cutoff score is set high to exclude a single high-scoring sequence from Nitrosococcus oceani ATCC 19707, which is classified in the Gammaproteobacteria). The gene in Bacillus subtilis was shown to be in the regulon of the sporulation sigma factor, sigma-E, and its mutation was shown to create a sporulation defect.
Probab=33.10 E-value=49 Score=32.35 Aligned_cols=18 Identities=6% Similarity=0.289 Sum_probs=12.7
Q ss_pred cccchHHHHHHHHHHHHH
Q 026233 132 VSGIIDETVQVVLATIGF 149 (241)
Q Consensus 132 ~~~~~dE~~QvvLAtlgf 149 (241)
+.=+.+|-+++++--|.+
T Consensus 112 ~e~s~eE~~~~lfEdLeL 129 (371)
T TIGR02877 112 TEVTLEELFELLFEDLEL 129 (371)
T ss_pred EEecHHHHHHHHHhhccC
Confidence 445688988888766553
No 22
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=32.70 E-value=39 Score=26.28 Aligned_cols=20 Identities=20% Similarity=0.242 Sum_probs=16.4
Q ss_pred CCCCCCCCcccchHHHHHHH
Q 026233 124 SGESGDEGVSGIIDETVQVV 143 (241)
Q Consensus 124 sG~Sede~~~~~~dE~~Qvv 143 (241)
+=.|+|++|.+|.++.+||.
T Consensus 12 Fmss~ddDf~~Fi~vVksVl 31 (72)
T PF12575_consen 12 FMSSSDDDFNNFINVVKSVL 31 (72)
T ss_pred hcCCCHHHHHHHHHHHHHHH
Confidence 44678889999999999874
No 23
>PF02957 TT_ORF2: TT viral ORF2; InterPro: IPR004118 This entry represents the Gyroviral VP2 protein and TT viral ORF2. Torque teno virus (TTV) is a nonenveloped and single-stranded DNA virus that was initially isolated from a Japanese patient with hepatitis of unknown aetiology, and which has since been found to infect both healthy and diseased individuals []. Numerous prevalence studies have raised questions about its role in unexplained hepatitis. ORF2 is a 150 residue protein of unknown function. Gyroviruses are small circular single stranded viruses, such as the Chicken anaemia virus. The VP2 protein contains a set of conserved cysteine and histidine residues suggesting a zinc binding domain. VP2 may act as a scaffold protein in virion assembly and may also play a role in intracellular signaling during viral replication.
Probab=32.63 E-value=68 Score=25.54 Aligned_cols=14 Identities=14% Similarity=0.209 Sum_probs=7.7
Q ss_pred cchHHHHHHHHHHH
Q 026233 134 GIIDETVQVVLATI 147 (241)
Q Consensus 134 ~~~dE~~QvvLAtl 147 (241)
++=+|-+.-+||.+
T Consensus 105 d~~~~dld~L~aa~ 118 (122)
T PF02957_consen 105 DYDEEDLDELFAAA 118 (122)
T ss_pred CCChHHHHHHhhhh
Confidence 34556666666643
No 24
>PF04801 Sin_N: Sin-like protein conserved region; InterPro: IPR006886 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. RNA polymerase III (Pol III) is a complex consisting of 17 subunits, which synthesizes small RNAs, such as 5S rRNA and tRNAs. Pol III is essential for efficient transcription from both the type 2 VAI and type 3 U6 RNA polymerase III promoters and plays a key role in sensing and limiting infection by intracellular bacteria and DNA viruses. Subunit c5 is a specific peripheric component of RNA polymerase III complex. ; GO: 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent, 0005634 nucleus
Probab=31.41 E-value=26 Score=33.18 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=19.9
Q ss_pred hhHHHhhhhhHhHhhcCccchhhhHH
Q 026233 160 EELTKLGKDYIKYLLGGSKSVRLSNA 185 (241)
Q Consensus 160 eEL~~LarDyikYll~G~rsvRLkrA 185 (241)
-|.++.|||||+|+|+..+. ++|+
T Consensus 332 ~e~~~~aRD~iL~~F~~~~~--v~r~ 355 (421)
T PF04801_consen 332 AEQLCRARDYILLLFTKSRY--VKRK 355 (421)
T ss_pred chhhhhhHHHHHHHhcCCCc--eeHH
Confidence 36888999999999999988 4444
No 25
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=31.36 E-value=39 Score=34.79 Aligned_cols=21 Identities=24% Similarity=0.232 Sum_probs=8.4
Q ss_pred HhhhhhHhHhhcCccchhhhH
Q 026233 164 KLGKDYIKYLLGGSKSVRLSN 184 (241)
Q Consensus 164 ~LarDyikYll~G~rsvRLkr 184 (241)
+|-|=+|-=++--.--||+-|
T Consensus 221 KLKRLdI~PvVCnVEQVRiLR 241 (641)
T KOG3915|consen 221 KLKRLDITPVVCNVEQVRILR 241 (641)
T ss_pred HhhccceeeeeechHHHHHHh
Confidence 333434444444444444333
No 26
>PRK05865 hypothetical protein; Provisional
Probab=29.87 E-value=2.1e+02 Score=30.71 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=21.4
Q ss_pred cCCCccccChHHHHHHHHHhcccCC
Q 026233 213 LNTTTWFDGPEKYRRMLRSYRERSA 237 (241)
Q Consensus 213 ~~~ptww~~p~k~~~~~~~~~~~~~ 237 (241)
+..|+|.++|.....++.+|++...
T Consensus 590 l~~prw~EdP~~Ll~~i~~~~~~~~ 614 (854)
T PRK05865 590 MAATSYADNPELLVRMVAKTLRAVP 614 (854)
T ss_pred cCCCCcccChHHHHHHHHHHHhccC
Confidence 4479999999999999999997543
No 27
>PRK07772 single-stranded DNA-binding protein; Provisional
Probab=28.78 E-value=55 Score=28.81 Aligned_cols=11 Identities=18% Similarity=0.102 Sum_probs=8.6
Q ss_pred CCCceEEEeCC
Q 026233 52 QKNTVACSLGG 62 (241)
Q Consensus 52 ~~~~~vCl~gG 62 (241)
+|...|.+.|=
T Consensus 72 ~KGd~V~V~Gr 82 (186)
T PRK07772 72 TKGMRVIVTGR 82 (186)
T ss_pred CCCCEEEEEEE
Confidence 57888888883
No 28
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=26.89 E-value=3e+02 Score=23.47 Aligned_cols=57 Identities=26% Similarity=0.370 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHhcchhHHHhhhhhHhHhhcCccc-------hhhhHHHHHHHHHHHHhhhc
Q 026233 142 VVLATIGFILLYIYIIAGEELTKLGKDYIKYLLGGSKS-------VRLSNAMDALESFWKTLSDN 199 (241)
Q Consensus 142 vvLAtlgfIllYI~Ii~GeEL~~LarDyikYll~G~rs-------vRLkrAm~~W~~f~~~~t~~ 199 (241)
++++.|.+|++.++|+..--|-+|-|.|-.++ +|+-- .++.+.+..+..-.+.+.+.
T Consensus 5 i~l~~l~iilli~~~~~~~kl~kl~r~Y~~lm-~g~~~~~lE~~l~~~~~~~~~~~~~~~~~~~~ 68 (151)
T PF14584_consen 5 IGLLVLVIILLILIIILNIKLRKLKRRYDALM-RGKDGKNLEDLLNELFDQIDELKEELEELEKR 68 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888888888889999999998776 33332 35556666666666655544
No 29
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=26.62 E-value=94 Score=27.34 Aligned_cols=16 Identities=31% Similarity=0.721 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 026233 141 QVVLATIGFILLYIYI 156 (241)
Q Consensus 141 QvvLAtlgfIllYI~I 156 (241)
|++.-.|.|++||+++
T Consensus 55 ~l~w~~I~FliL~~lL 70 (204)
T PRK09174 55 QLLWLAITFGLFYLFM 70 (204)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888889999999875
No 30
>PF03954 Lectin_N: Hepatic lectin, N-terminal domain; InterPro: IPR005640 Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. C-type lectins display a wide range of specificities. They require Ca2+ for their activity They are found predominantly but not exclusively in vertebrates. This entry presents N-terminal domain, which is found in C-type lectins.; GO: 0005529 sugar binding, 0016020 membrane
Probab=26.54 E-value=1.4e+02 Score=25.76 Aligned_cols=45 Identities=24% Similarity=0.485 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHhcchhHHHhhhhhHhHhhcCccchhhhHHHHHHHHHHHHhhhchh
Q 026233 142 VVLATIGFILLYIYIIAGEELTKLGKDYIKYLLGGSKSVRLSNAMDALESFWKTLSDNKL 201 (241)
Q Consensus 142 vvLAtlgfIllYI~Ii~GeEL~~LarDyikYll~G~rsvRLkrAm~~W~~f~~~~t~~~~ 201 (241)
-.|..+||.++-++|| ++-|.++..|++-....+--|-+||.+.+
T Consensus 35 l~LlsLgl~~LLLV~I---------------cVigsQ~~qlq~dl~tLretfsNFssst~ 79 (138)
T PF03954_consen 35 LLLLSLGLSLLLLVVI---------------CVIGSQNSQLQRDLRTLRETFSNFSSSTL 79 (138)
T ss_pred HHHHHHHHHHHHHHHH---------------HhhcCccHHHHHHHHHHHHHHhcccHHHH
Confidence 4678889988888877 68899999999999888877777776633
No 31
>PF07125 DUF1378: Protein of unknown function (DUF1378); InterPro: IPR009808 This entry is represented by Bacteriophage 933W, Orf25. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of hypothetical bacterial and phage proteins of around 59 residues in length. Bacterial members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=25.55 E-value=1.3e+02 Score=22.67 Aligned_cols=8 Identities=38% Similarity=0.717 Sum_probs=3.7
Q ss_pred hHhHhhcC
Q 026233 169 YIKYLLGG 176 (241)
Q Consensus 169 yikYll~G 176 (241)
+.+||+.|
T Consensus 16 caLYLvsG 23 (59)
T PF07125_consen 16 CALYLVSG 23 (59)
T ss_pred HHHHHHhc
Confidence 34455444
No 32
>PF09323 DUF1980: Domain of unknown function (DUF1980); InterPro: IPR015402 Members of this occur in gene pairs with members of PF03773 from PFAM. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region. Members of this family are found in a set of prokaryotic hypothetical proteins. Their exact function has not, as yet, been defined.
Probab=24.90 E-value=94 Score=26.30 Aligned_cols=33 Identities=30% Similarity=0.593 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHhcchhHHHhhhhhHhHhhc
Q 026233 142 VVLATIGFILLYIYIIAGEELTKLGKDYIKYLLG 175 (241)
Q Consensus 142 vvLAtlgfIllYI~Ii~GeEL~~LarDyikYll~ 175 (241)
.+|...|+.++|+ +++|+-.+.+.-.|..|+.-
T Consensus 5 liL~~~~~l~~~l-~~sG~i~~YI~P~~~~~~~~ 37 (182)
T PF09323_consen 5 LILLGFGILLFYL-ILSGKILLYIHPRYIPLLYF 37 (182)
T ss_pred HHHHHHHHHHHHH-HHhCcHHHHhCccHHHHHHH
Confidence 3566666666666 67899888888888877644
No 33
>COG1314 SecG Preprotein translocase subunit SecG [Intracellular trafficking and secretion]
Probab=24.16 E-value=1.8e+02 Score=22.83 Aligned_cols=22 Identities=9% Similarity=0.339 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh
Q 026233 136 IDETVQVVLATIGFILLYIYII 157 (241)
Q Consensus 136 ~dE~~QvvLAtlgfIllYI~Ii 157 (241)
++..+|-+-+.++++|+-+-|+
T Consensus 47 ~~~~L~r~T~iLa~lF~i~~i~ 68 (86)
T COG1314 47 VENFLTRTTAILAVLFFIISLV 68 (86)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 5566777777777766655543
No 34
>PRK06241 phosphoenolpyruvate synthase; Validated
Probab=23.88 E-value=55 Score=34.46 Aligned_cols=23 Identities=13% Similarity=0.372 Sum_probs=20.7
Q ss_pred cCCCccccChHHHHHHHHHhccc
Q 026233 213 LNTTTWFDGPEKYRRMLRSYRER 235 (241)
Q Consensus 213 ~~~ptww~~p~k~~~~~~~~~~~ 235 (241)
+..|||.++|+..+.++++|+..
T Consensus 592 l~~p~w~EdP~~l~~~i~~~l~~ 614 (871)
T PRK06241 592 ITKPRWREDPSTLVPMILNNIKN 614 (871)
T ss_pred cCCCChhhChHHHHHHHHHHHHh
Confidence 56899999999999999999864
No 35
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=23.50 E-value=76 Score=29.92 Aligned_cols=6 Identities=17% Similarity=0.246 Sum_probs=2.5
Q ss_pred HHHHhh
Q 026233 76 FSKAMG 81 (241)
Q Consensus 76 LEkAmg 81 (241)
.++||.
T Consensus 248 A~~Ai~ 253 (346)
T TIGR01659 248 AQEAIS 253 (346)
T ss_pred HHHHHH
Confidence 344444
No 36
>PF05611 DUF780: Caenorhabditis elegans protein of unknown function (DUF780); InterPro: IPR008498 This family consists of several short proteins of unknown function found in Caenorhabditis species.
Probab=22.88 E-value=78 Score=24.63 Aligned_cols=7 Identities=29% Similarity=0.814 Sum_probs=3.1
Q ss_pred cccCCCC
Q 026233 102 FYDGDGG 108 (241)
Q Consensus 102 ~~~GG~G 108 (241)
++.||+|
T Consensus 32 YA~ggsg 38 (71)
T PF05611_consen 32 YASGGSG 38 (71)
T ss_pred hcccCCC
Confidence 3345544
No 37
>PF13703 PepSY_TM_2: PepSY-associated TM helix
Probab=22.00 E-value=1.7e+02 Score=21.79 Aligned_cols=50 Identities=16% Similarity=0.150 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHhcchhHHH--hhhhhHhHhhcCccchhhhHHHHHHHHHH
Q 026233 140 VQVVLATIGFILLYIYIIAGEELTK--LGKDYIKYLLGGSKSVRLSNAMDALESFW 193 (241)
Q Consensus 140 ~QvvLAtlgfIllYI~Ii~GeEL~~--LarDyikYll~G~rsvRLkrAm~~W~~f~ 193 (241)
=+.+++++|++++-+. +.|--+.- ..++. +-++-+++...++ .++||+..
T Consensus 16 G~~iv~~~al~~l~~~-isGl~l~~p~~~~~~--~~~r~~~~~~~r~-~~dlH~~~ 67 (88)
T PF13703_consen 16 GRWIVGILALLLLLLL-ISGLYLWWPRRWRWF--FSLRPKRSKSKRR-WFDLHRVL 67 (88)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHhhHHhcCcc--cccccCCCCccCh-HHHHHHHH
Confidence 5678888888777554 46877762 23332 3555555556667 88899864
No 38
>PRK05325 hypothetical protein; Provisional
Probab=21.62 E-value=92 Score=30.70 Aligned_cols=18 Identities=6% Similarity=0.263 Sum_probs=12.4
Q ss_pred cccchHHHHHHHHHHHHH
Q 026233 132 VSGIIDETVQVVLATIGF 149 (241)
Q Consensus 132 ~~~~~dE~~QvvLAtlgf 149 (241)
|.=+.+|-+.+++--|++
T Consensus 100 ~els~eE~~~~lfEdLeL 117 (401)
T PRK05325 100 FEISLEELLDLLFEDLEL 117 (401)
T ss_pred EEecHHHHHHHHHhhcCC
Confidence 446678888887766653
No 39
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=21.40 E-value=3.6e+02 Score=26.82 Aligned_cols=61 Identities=20% Similarity=0.200 Sum_probs=38.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhcchhHHHhhhhhHhHhhcCccchhhhHHHHHHHHHHHHhhhc
Q 026233 134 GIIDETVQVVLATIGFILLYIYIIAGEELTKLGKDYIKYLLGGSKSVRLSNAMDALESFWKTLSDN 199 (241)
Q Consensus 134 ~~~dE~~QvvLAtlgfIllYI~Ii~GeEL~~LarDyikYll~G~rsvRLkrAm~~W~~f~~~~t~~ 199 (241)
+-|..++|+++..++.+++-+.++.+-.--++=+---|.+++-+..-| ..|-+|.+.+++.
T Consensus 257 g~~~~~~~~~~~~~~~~~~~~~~~s~~lr~~l~~~~~k~~~~~~~dyr-----~~~l~~~~~L~~~ 317 (679)
T TIGR02916 257 GEWGDAFQLAFLFAAGLLLAVLLFSGTLRARLRVFISKHFFRYKYDYR-----EEWLRFTQTLSEA 317 (679)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccccchH-----HHHHHHHHHHhCC
Confidence 568888898888888888777777665544433333333333332222 3578888888776
No 40
>PF14992 TMCO5: TMCO5 family
Probab=21.23 E-value=1.3e+02 Score=28.55 Aligned_cols=32 Identities=19% Similarity=0.479 Sum_probs=26.3
Q ss_pred cchHHHHHHH-------HHHHHHHHHHHHHhcchhHHHh
Q 026233 134 GIIDETVQVV-------LATIGFILLYIYIIAGEELTKL 165 (241)
Q Consensus 134 ~~~dE~~Qvv-------LAtlgfIllYI~Ii~GeEL~~L 165 (241)
-+|.=+++.+ ..++|.+|.||+.|+.+-+..+
T Consensus 212 ~~wkr~lr~l~f~vL~f~~LL~y~~f~~~fInpdll~~~ 250 (280)
T PF14992_consen 212 TFWKRALRLLFFMVLFFTRLLGYLLFYIQFINPDLLEDV 250 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHH
Confidence 7899999986 3567889999999999887763
No 41
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=21.18 E-value=86 Score=26.14 Aligned_cols=19 Identities=42% Similarity=0.607 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 026233 139 TVQVVLATIGFILLYIYII 157 (241)
Q Consensus 139 ~~QvvLAtlgfIllYI~Ii 157 (241)
++=|++++||+||+-.|+|
T Consensus 70 i~gv~aGvIg~Illi~y~i 88 (122)
T PF01102_consen 70 IFGVMAGVIGIILLISYCI 88 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3444555555555444443
No 42
>PF09441 Abp2: ARS binding protein 2; InterPro: IPR018562 This DNA-binding protein binds to the autonomously replicating sequence (ARS) binding element. It may play a role in regulating the cell cycle response to stress signals [].
Probab=20.89 E-value=83 Score=28.16 Aligned_cols=35 Identities=26% Similarity=0.356 Sum_probs=27.9
Q ss_pred chhhhHHHHHHH--HHHHHhhhchhhhhhhhhhhhccCCC
Q 026233 179 SVRLSNAMDALE--SFWKTLSDNKLVYDKYWLEKEILNTT 216 (241)
Q Consensus 179 svRLkrAm~~W~--~f~~~~t~~~~~~~~~~le~~i~~~p 216 (241)
.|||||=|..-| -|||-++.+ ...||.+-+-...|
T Consensus 100 aVRLKRWM~aMHVDAFFeYllg~---~~~Y~t~iP~~~~~ 136 (175)
T PF09441_consen 100 AVRLKRWMRAMHVDAFFEYLLGK---PHPYYTQIPPDNPP 136 (175)
T ss_pred HHHHHHHHHHhhHHHHHHHHhCC---CCcccccCCCCCCC
Confidence 489999888765 699999999 46899998755544
No 43
>TIGR01431 adm_rel adenosine deaminase-related growth factor. Members of this family have been described as secreted proteins with growth factor activity and regions of adenosine deaminase homology in insects, mollusks, and vertebrates.
Probab=20.88 E-value=2.1e+02 Score=28.41 Aligned_cols=63 Identities=14% Similarity=0.133 Sum_probs=40.3
Q ss_pred CCCCc---ccchHHHHHHHHHHHHHHHHHHHHhcchhHHHhhhhhHhHhhcC--ccchhhhHHHHHHHHHHHHh
Q 026233 128 GDEGV---SGIIDETVQVVLATIGFILLYIYIIAGEELTKLGKDYIKYLLGG--SKSVRLSNAMDALESFWKTL 196 (241)
Q Consensus 128 ede~~---~~~~dE~~QvvLAtlgfIllYI~Ii~GeEL~~LarDyikYll~G--~rsvRLkrAm~~W~~f~~~~ 196 (241)
||-++ ++..+|-.|++.+. ++ .. ..=++|-+||+|.|+|.+-. .|..++++-=.+|..|++.+
T Consensus 411 DDP~~~~~t~Ls~ef~~a~~~~-~~--~~---~~l~~L~~la~NSi~~Sfl~~~eK~~~~~~~~~~W~~f~~~~ 478 (479)
T TIGR01431 411 DDPAFWGATPLSHDFYIAFMGL-AS--AK---ADLRTLKQLALNSIKYSALSEEEKRTALAKWQKQWDKFIDEV 478 (479)
T ss_pred CCccccCCCCchHHHHHHHHHh-cc--cC---CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 55545 25777777766432 10 00 01178999999999998755 45566666667788887764
No 44
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=20.67 E-value=99 Score=33.92 Aligned_cols=47 Identities=19% Similarity=0.324 Sum_probs=34.7
Q ss_pred chhHHHhhhhhHhHhhcCc----cchhhhHHHHHHHHHHHHhhhchhhhhhhhhhh
Q 026233 159 GEELTKLGKDYIKYLLGGS----KSVRLSNAMDALESFWKTLSDNKLVYDKYWLEK 210 (241)
Q Consensus 159 GeEL~~LarDyikYll~G~----rsvRLkrAm~~W~~f~~~~t~~~~~~~~~~le~ 210 (241)
-++|++=+..+||++++|. -..|.++||.+|-. ...+|.. |..||++
T Consensus 1019 ~~~~~a~ii~~iR~~~~~~~l~~~~~~v~~a~~~~~~-~~~~t~~----Q~~wl~~ 1069 (1123)
T PRK11448 1019 NEDIAASIIGFIRQAALGDALVPFEERVDHAMQKIYA-ERDWTPV----QRKWLER 1069 (1123)
T ss_pred hhhHHHHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHH-hCCCCHH----HHHHHHH
Confidence 4566667889999999987 23789999999953 3455544 7788775
No 45
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=20.58 E-value=1.5e+02 Score=29.96 Aligned_cols=7 Identities=0% Similarity=-0.097 Sum_probs=3.1
Q ss_pred hHHHHhh
Q 026233 75 DFSKAMG 81 (241)
Q Consensus 75 sLEkAmg 81 (241)
.+++.|.
T Consensus 578 ~~~~wL~ 584 (653)
T PTZ00009 578 EALEWLE 584 (653)
T ss_pred HHHHHHh
Confidence 3444444
No 46
>PRK08296 hypothetical protein; Provisional
Probab=20.53 E-value=2.3e+02 Score=29.32 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=20.3
Q ss_pred cCCCccccChHHHHHHHHHhcc
Q 026233 213 LNTTTWFDGPEKYRRMLRSYRE 234 (241)
Q Consensus 213 ~~~ptww~~p~k~~~~~~~~~~ 234 (241)
+..|+|.++|.....++++|++
T Consensus 298 l~~prW~EdP~~ll~~I~~~i~ 319 (603)
T PRK08296 298 HHDKSWIDDLEIPLGYIKDYIG 319 (603)
T ss_pred eCCCChhhChHHHHHHHHHHHH
Confidence 5689999999999999999996
No 47
>PF07234 DUF1426: Protein of unknown function (DUF1426); InterPro: IPR009871 This family consists of several Banana bunchy top virus proteins of around 120 residues in length. Q9IGU4 from SWISSPROT is annotated a movement protein whereas most other family members are hypothetical. The function of this family is unknown.
Probab=20.04 E-value=1.2e+02 Score=25.41 Aligned_cols=30 Identities=30% Similarity=0.473 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhcchhHHHhhhhhHhHhhc
Q 026233 146 TIGFILLYIYIIAGEELTKLGKDYIKYLLG 175 (241)
Q Consensus 146 tlgfIllYI~Ii~GeEL~~LarDyikYll~ 175 (241)
.|++-.+||+++-=-|+-+.+++-.+||+-
T Consensus 22 FiAItIlYILLalL~EvPkYIK~~VrYlVE 51 (117)
T PF07234_consen 22 FIAITILYILLALLFEVPKYIKELVRYLVE 51 (117)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 466777899888888888888888888863
Done!