Query 026233
Match_columns 241
No_of_seqs 32 out of 34
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 08:43:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026233.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026233hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l6f_A Focal adhesion kinase 1 77.8 0.54 1.9E-05 41.4 0.0 10 119-128 192-201 (215)
2 1ypw_A Transitional endoplasmi 58.7 2 6.9E-05 42.3 0.0 10 75-84 735-744 (806)
3 3u6r_H Antibody 1:7 (heavy cha 58.5 2 7E-05 33.6 0.0 9 19-27 20-28 (149)
4 2y6w_A BCL-2-like protein 2; a 53.9 26 0.00089 28.8 5.9 15 161-175 22-36 (177)
5 2vof_A BCL-2-related protein A 53.0 32 0.0011 27.5 6.2 17 161-177 13-29 (157)
6 2i7u_A Four-alpha-helix bundle 45.6 13 0.00045 26.7 2.5 14 89-102 14-27 (62)
7 3pk1_A Induced myeloid leukemi 45.1 73 0.0025 26.8 7.5 71 163-236 42-120 (189)
8 1p4b_L Antibody variable light 43.4 5 0.00017 30.4 0.0 13 18-30 21-33 (135)
9 2f3j_A RNA and export factor b 39.5 47 0.0016 26.3 5.2 18 79-97 14-31 (177)
10 4hw4_A Induced myeloid leukemi 34.9 93 0.0032 25.1 6.3 71 163-236 9-87 (157)
11 1b25_A Protein (formaldehyde f 32.9 35 0.0012 33.3 4.1 61 173-234 523-585 (619)
12 1ohu_A Apoptosis regulator CED 30.8 43 0.0015 27.7 3.7 58 163-234 14-91 (175)
13 2l3n_A DNA-binding protein RAP 30.2 53 0.0018 25.5 3.9 37 94-138 44-82 (104)
14 1wdg_A E2 glycoprotein; MHV, c 27.8 21 0.0007 27.9 1.2 12 89-100 30-41 (94)
15 1o0l_A Apoptosis regulator BCL 27.5 1.7E+02 0.0057 24.0 6.7 70 161-236 14-95 (188)
16 3ng9_A Capsid protein; beta ba 25.9 23 0.0008 35.9 1.5 16 217-232 289-304 (736)
17 3nwm_A Peptide/beta-2microglob 25.2 17 0.00059 33.7 0.4 6 19-24 46-51 (443)
18 3ntt_A Capsid protein; gene th 25.1 22 0.00075 36.1 1.1 15 218-232 280-294 (724)
19 2lfh_A DNA-binding protein inh 24.9 31 0.0011 25.4 1.6 13 161-173 53-65 (68)
20 2nl9_A Fusion protein consisti 24.6 2.6E+02 0.0088 22.0 7.5 70 164-236 10-87 (157)
21 2d9i_A NEDD4-binding protein 2 24.5 36 0.0012 24.7 2.0 49 134-191 16-71 (96)
22 3p8c_D Wiskott-aldrich syndrom 22.9 27 0.00092 31.5 1.2 6 49-54 127-132 (279)
23 2l6f_A Focal adhesion kinase 1 28.5 18 0.00061 31.9 0.0 21 119-139 189-209 (215)
24 3pgz_A Single-stranded DNA-bin 21.4 20 0.00068 30.5 0.0 10 52-61 94-103 (193)
25 2w3l_A BCL2-XL, apoptosis regu 21.2 1.6E+02 0.0055 22.9 5.2 14 164-177 5-18 (144)
26 1mdy_A Protein (MYOD BHLH doma 20.5 43 0.0015 24.0 1.6 14 161-174 50-63 (68)
No 1
>2l6f_A Focal adhesion kinase 1, linker1, paxillin, linke paxillin; FAT, FAK, LD2, LD4, fusion protein, chimera protei transferase,cell adhesion; NMR {Gallus gallus} PDB: 2l6g_A 2l6h_A
Probab=77.85 E-value=0.54 Score=41.42 Aligned_cols=10 Identities=60% Similarity=0.986 Sum_probs=4.9
Q ss_pred CCCCCCCCCC
Q 026233 119 RGEGGSGESG 128 (241)
Q Consensus 119 Gggg~sG~Se 128 (241)
||.|++|+|+
T Consensus 192 ~~~~~~~~~~ 201 (215)
T 2l6f_A 192 GGSGGSGGSS 201 (215)
Confidence 4444555554
No 2
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=58.74 E-value=2 Score=42.25 Aligned_cols=10 Identities=30% Similarity=0.308 Sum_probs=4.2
Q ss_pred hHHHHhhccC
Q 026233 75 DFSKAMGNLG 84 (241)
Q Consensus 75 sLEkAmg~~K 84 (241)
.+++||...+
T Consensus 735 ~f~~a~~~~~ 744 (806)
T 1ypw_A 735 HFEEAMRFAR 744 (806)
T ss_dssp SSCCCCCC--
T ss_pred HHHHHHHhCC
Confidence 4555555443
No 3
>3u6r_H Antibody 1:7 (heavy chain); IG-like domain, neutralizing single chain FV, immune system; 2.67A {Homo sapiens}
Probab=58.53 E-value=2 Score=33.59 Aligned_cols=9 Identities=11% Similarity=0.538 Sum_probs=4.9
Q ss_pred ccccccccC
Q 026233 19 RIRLVCERN 27 (241)
Q Consensus 19 ~~~~~~~~~ 27 (241)
...|.|.+.
T Consensus 20 sVtL~C~~s 28 (149)
T 3u6r_H 20 SVKVSCQVF 28 (149)
T ss_dssp CEEEEEEEE
T ss_pred CEEEEeEee
Confidence 346666543
No 4
>2y6w_A BCL-2-like protein 2; apoptosis; HET: PGE; 2.00A {Homo sapiens} PDB: 1mk3_A 1zy3_A
Probab=53.85 E-value=26 Score=28.78 Aligned_cols=15 Identities=27% Similarity=0.481 Sum_probs=12.1
Q ss_pred hHHHhhhhhHhHhhc
Q 026233 161 ELTKLGKDYIKYLLG 175 (241)
Q Consensus 161 EL~~LarDyikYll~ 175 (241)
+-..|+.|||.|.++
T Consensus 22 ~~~~L~~dYi~y~l~ 36 (177)
T 2y6w_A 22 DTRALVADFVGYKLR 36 (177)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc
Confidence 345788999999996
No 5
>2vof_A BCL-2-related protein A1; BH3, apoptosis, Pro-surviVal, mitochondrion, protein- complex; 1.8A {Mus musculus} PDB: 2vog_A 2voh_A* 2voi_A 3i1h_A 3mqp_A 2vm6_A
Probab=52.96 E-value=32 Score=27.52 Aligned_cols=17 Identities=24% Similarity=0.606 Sum_probs=13.6
Q ss_pred hHHHhhhhhHhHhhcCc
Q 026233 161 ELTKLGKDYIKYLLGGS 177 (241)
Q Consensus 161 EL~~LarDyikYll~G~ 177 (241)
+...|++|||.|.++..
T Consensus 13 ~~~~L~~Dyi~y~l~~~ 29 (157)
T 2vof_A 13 HIHSLAEHYLQYVLQVP 29 (157)
T ss_dssp HHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHCCC
Confidence 34678999999999754
No 6
>2i7u_A Four-alpha-helix bundle; HOMO dimer, anesthetic binding, de novo protein/ligand binding protein complex; NMR {Synthetic} PDB: 2jst_A
Probab=45.55 E-value=13 Score=26.71 Aligned_cols=14 Identities=14% Similarity=-0.175 Sum_probs=9.4
Q ss_pred HHHHHHHHHHhhhc
Q 026233 89 IEDVLRQQIQKQEF 102 (241)
Q Consensus 89 ieD~L~~qI~K~e~ 102 (241)
.+.+|.++..|.-+
T Consensus 14 ewkklaeeaaklle 27 (62)
T 2i7u_A 14 EWKKLAEEAAKLLE 27 (62)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 34567888888843
No 7
>3pk1_A Induced myeloid leukemia cell differentiation Pro 1; BCL-2 family fold, regulation of apoptosis, mitochondri apoptosis-apoptosis regulator complex; 2.49A {Homo sapiens}
Probab=45.14 E-value=73 Score=26.79 Aligned_cols=71 Identities=13% Similarity=0.103 Sum_probs=38.2
Q ss_pred HHhhhhhHhHhhcC-ccchh-------hhHHHHHHHHHHHHhhhchhhhhhhhhhhhccCCCccccChHHHHHHHHHhcc
Q 026233 163 TKLGKDYIKYLLGG-SKSVR-------LSNAMDALESFWKTLSDNKLVYDKYWLEKEILNTTTWFDGPEKYRRMLRSYRE 234 (241)
Q Consensus 163 ~~LarDyikYll~G-~rsvR-------LkrAm~~W~~f~~~~t~~~~~~~~~~le~~i~~~ptww~~p~k~~~~~~~~~~ 234 (241)
..|++|||++-++| +++.. .+++....++.-..|.++-+..=++.+.+--+ +|. +.-..|..+.++++.
T Consensus 42 ~~l~~~yl~~~~~~~~~~~~l~~~~~~~~~~~~~Lr~vgdEle~~~~~~F~~m~~qL~i-t~~--~a~~~F~~Va~elF~ 118 (189)
T 3pk1_A 42 LEIISRYLREQATGAKDTKPMGRSGATSRKALETLRRVGDGVQRNHETAFQGMLRKLDI-KNE--DDVKSLSRVMIHVFS 118 (189)
T ss_dssp HHHHHHHHHHHHHCCC---------CHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTC-CST--TCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccccccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCc--hHHHHHHHHHHHHhc
Confidence 34667888877766 34443 35666666666665555533222333333211 222 344568899998887
Q ss_pred cC
Q 026233 235 RS 236 (241)
Q Consensus 235 ~~ 236 (241)
..
T Consensus 119 DG 120 (189)
T 3pk1_A 119 DG 120 (189)
T ss_dssp TS
T ss_pred cC
Confidence 64
No 8
>1p4b_L Antibody variable light chain; FV antibody, antigen peptide binder, SCFV, picomolar binder, immune system; 2.35A {Mus musculus} SCOP: b.1.1.1 PDB: 1p4i_L
Probab=43.41 E-value=5 Score=30.36 Aligned_cols=13 Identities=23% Similarity=0.539 Sum_probs=8.5
Q ss_pred CccccccccCccc
Q 026233 18 NRIRLVCERNTTR 30 (241)
Q Consensus 18 ~~~~~~~~~~~~p 30 (241)
....|.|.+...+
T Consensus 21 ~~vtL~C~~~~~~ 33 (135)
T 1p4b_L 21 ETVTLTCRSSTGA 33 (135)
T ss_dssp CEEEEEEEETTSS
T ss_pred CCEEEEEEecCCC
Confidence 3457888876554
No 9
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=39.55 E-value=47 Score=26.30 Aligned_cols=18 Identities=17% Similarity=0.383 Sum_probs=11.1
Q ss_pred HhhccCCCCCHHHHHHHHH
Q 026233 79 AMGNLGKGQSIEDVLRQQI 97 (241)
Q Consensus 79 Amg~~Kk~~SieD~L~~qI 97 (241)
+|..+ =+.|+.|++.++-
T Consensus 14 ~m~~~-ld~sLDdii~~~r 31 (177)
T 2f3j_A 14 PMADK-MDMSLDDIIKLNR 31 (177)
T ss_dssp -CCCS-SSCCHHHHHHHHH
T ss_pred chhhh-hccCHHHHHhhcc
Confidence 56654 5678888876543
No 10
>4hw4_A Induced myeloid leukemia cell differentiation Pro 1; anti-apoptotic protein, BH3 peptides, apoptosis; 1.53A {Homo sapiens} PDB: 3kj0_A 2pqk_A 3kj1_A 3kj2_A 3kz0_A 3mk8_A 2kbw_A 4hw3_A* 4hw2_A* 3d7v_A 3io9_A 2nl9_A* 2nla_A 4g35_A* 1wsx_A 2jm6_B 2roc_A 2rod_A 3mk8_B
Probab=34.89 E-value=93 Score=25.12 Aligned_cols=71 Identities=14% Similarity=0.127 Sum_probs=41.2
Q ss_pred HHhhhhhHhHhhcCcc--------chhhhHHHHHHHHHHHHhhhchhhhhhhhhhhhccCCCccccChHHHHHHHHHhcc
Q 026233 163 TKLGKDYIKYLLGGSK--------SVRLSNAMDALESFWKTLSDNKLVYDKYWLEKEILNTTTWFDGPEKYRRMLRSYRE 234 (241)
Q Consensus 163 ~~LarDyikYll~G~r--------svRLkrAm~~W~~f~~~~t~~~~~~~~~~le~~i~~~ptww~~p~k~~~~~~~~~~ 234 (241)
.++++|||++-+.|.+ .-+.+++....++.-..|.++-+..=++.+.+--+ +|. +.-+.|..+.++.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~Lr~vgdele~~~~~~f~~m~~~L~i-t~~--~a~~~F~~Va~elF~ 85 (157)
T 4hw4_A 9 LEIISRYLREQATGAKDTKPMGRSGATSRKALETLRRVGDGVQRNHETAFQGMLRKLDI-KNE--DDVKSLSRVMIHVFS 85 (157)
T ss_dssp HHHHHHHHHHHHHSCCCCSCCCSSHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCC-CSH--HHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHhcCccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCc--hHHHHHHHHHHHHhc
Confidence 4688999999885522 23566777777666666665533222333333211 121 233458888888887
Q ss_pred cC
Q 026233 235 RS 236 (241)
Q Consensus 235 ~~ 236 (241)
.+
T Consensus 86 dG 87 (157)
T 4hw4_A 86 DG 87 (157)
T ss_dssp GS
T ss_pred cC
Confidence 54
No 11
>1b25_A Protein (formaldehyde ferredoxin oxidoreductase); MOCO, tungstoenzyme, tungsten containing protein, hypertherm oxidoreductase; HET: PTT; 1.85A {Pyrococcus furiosus} SCOP: a.110.1.1 d.152.1.1 PDB: 1b4n_A*
Probab=32.90 E-value=35 Score=33.25 Aligned_cols=61 Identities=16% Similarity=0.169 Sum_probs=42.2
Q ss_pred hhcCccchhhhHHHHHHHHHHHHhhhchhhhhhhhhhhhccCCCcccc--ChHHHHHHHHHhcc
Q 026233 173 LLGGSKSVRLSNAMDALESFWKTLSDNKLVYDKYWLEKEILNTTTWFD--GPEKYRRMLRSYRE 234 (241)
Q Consensus 173 ll~G~rsvRLkrAm~~W~~f~~~~t~~~~~~~~~~le~~i~~~ptww~--~p~k~~~~~~~~~~ 234 (241)
+--|.|...|.|+++.=. +--.++.+.+..-+.++|.+....|+.++ ++++|..++..|.+
T Consensus 523 ~~~geRi~~leR~fn~r~-~~~G~~~~dD~lP~r~~~ep~~~g~~~g~~~~~e~~~~~l~~YY~ 585 (619)
T 1b25_A 523 YKAADRVYSLIRAYWVRE-FNGKWDRKMDYPPKRWFTEGLKSGPHKGEHLDEKKYDELLSEYYR 585 (619)
T ss_dssp HHHHHHHHHHHHHHHHHH-TTTCCCGGGGCCCTHHHHCCCSSSTTTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhh-hcCCCCHHHCcCCHHHhcCCCCCCCCCCCcCCHHHHHHHHHHHHH
Confidence 344677777777765421 00045666555566788888888888886 88899999999865
No 12
>1ohu_A Apoptosis regulator CED-9; BCL-2 family; 2.03A {Caenorhabditis elegans} SCOP: f.1.4.1 PDB: 1ty4_A
Probab=30.77 E-value=43 Score=27.70 Aligned_cols=58 Identities=14% Similarity=0.130 Sum_probs=35.8
Q ss_pred HHhhhhhHhHhhcCc------------cchhhhHHHH--------HHHHHHHHhhhchhhhhhhhhhhhccCCCccccCh
Q 026233 163 TKLGKDYIKYLLGGS------------KSVRLSNAMD--------ALESFWKTLSDNKLVYDKYWLEKEILNTTTWFDGP 222 (241)
Q Consensus 163 ~~LarDyikYll~G~------------rsvRLkrAm~--------~W~~f~~~~t~~~~~~~~~~le~~i~~~ptww~~p 222 (241)
-+|+.|||.|.++.. ....+..+|. +...+|++|.++-..+ |. ..-
T Consensus 14 ~~Lv~DYI~yrL~~~g~~~~~~~~~~~~~~~~~~~Lr~vgdelE~~~~~~f~~m~~qL~i~------------~~--~a~ 79 (175)
T 1ohu_A 14 EGFVVDYFTHRIRQNGMEWFGAPGLPSGVQPEHEMMRVMGTIFEKKHAENFETFSEQLLAV------------PR--ISF 79 (175)
T ss_dssp HHHHHHHHHHHHHHTTCCCTTCCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------------SS--CCH
T ss_pred HHHHHHHHHHHHccCCCCcccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC------------Cc--hhH
Confidence 578999999999721 2335556664 5566666666663321 11 134
Q ss_pred HHHHHHHHHhcc
Q 026233 223 EKYRRMLRSYRE 234 (241)
Q Consensus 223 ~k~~~~~~~~~~ 234 (241)
+.|..|.++++.
T Consensus 80 ~~f~~Va~elF~ 91 (175)
T 1ohu_A 80 SLYQDVVRTVGN 91 (175)
T ss_dssp HHHHHHHTTSCC
T ss_pred HHHHHHHHHHhc
Confidence 567777777766
No 13
>2l3n_A DNA-binding protein RAP1, telomere length regulat; TAZ1; NMR {Schizosaccharomyces pombe}
Probab=30.22 E-value=53 Score=25.54 Aligned_cols=37 Identities=30% Similarity=0.409 Sum_probs=18.4
Q ss_pred HHHHHhh--hcccCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchHH
Q 026233 94 RQQIQKQ--EFYDGDGGKSPPRRGGGGRGEGGSGESGDEGVSGIIDE 138 (241)
Q Consensus 94 ~~qI~K~--e~~~GG~GGn~~~~GGgGGggg~sG~Sede~~~~~~dE 138 (241)
+--|.|. .+-+||+||..-++.| |.--|-+..+|+++
T Consensus 44 riaiakllskqtsggsggsklggsg--------gsrkdlsvkgmlyd 82 (104)
T 2l3n_A 44 RIAIAKLLSKQTSGGSGGSKLGGSG--------GSRKDLSVKGMLYD 82 (104)
T ss_dssp HHHHHHHHTTSCCCCSSCCCCCCCC--------CCCCCCCSCCCCCC
T ss_pred ehHHHHHHhhccCCCCCcccccCCC--------CCcccceeeeeeec
Confidence 4445555 3445666644332222 22256677777653
No 14
>1wdg_A E2 glycoprotein; MHV, coronavirus, heptad repeat, fusion core, viral entry, V protein; 2.06A {Murine hepatitis virus} SCOP: h.3.3.1 PDB: 1wdf_A
Probab=27.83 E-value=21 Score=27.92 Aligned_cols=12 Identities=17% Similarity=0.310 Sum_probs=8.4
Q ss_pred HHHHHHHHHHhh
Q 026233 89 IEDVLRQQIQKQ 100 (241)
Q Consensus 89 ieD~L~~qI~K~ 100 (241)
|||+.++|-+-.
T Consensus 30 IQdVVN~Qg~AL 41 (94)
T 1wdg_A 30 IQSVVNANAEAL 41 (94)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 788887775543
No 15
>1o0l_A Apoptosis regulator BCL-W; helical bundle, binding groove, BH3; NMR {Homo sapiens} SCOP: f.1.4.1
Probab=27.45 E-value=1.7e+02 Score=24.02 Aligned_cols=70 Identities=11% Similarity=0.084 Sum_probs=36.0
Q ss_pred hHHHhhhhhHhHhhcC------------ccchhhhHHHHHHHHHHHHhhhchhhhhhhhhhhhccCCCccccChHHHHHH
Q 026233 161 ELTKLGKDYIKYLLGG------------SKSVRLSNAMDALESFWKTLSDNKLVYDKYWLEKEILNTTTWFDGPEKYRRM 228 (241)
Q Consensus 161 EL~~LarDyikYll~G------------~rsvRLkrAm~~W~~f~~~~t~~~~~~~~~~le~~i~~~ptww~~p~k~~~~ 228 (241)
+-..|++|||.|.++. ..+..+.++|..- -+.|.++....-.+...+--++.- ..-+.|..+
T Consensus 14 ~~~~L~~dYi~yrl~~~g~~~~~~~~~~~~~~~v~~~Lr~~---gdele~~~~~~f~~~~~~l~i~~~---~~~~~F~~V 87 (188)
T 1o0l_A 14 DTRALVADFVGYKLRQKGYVCGAGPGEGPAADPLHQAMRAA---GDEFETRFRRTFSDLAAQLHVTPG---SAQQRFTQV 87 (188)
T ss_dssp SHHHHHHHHHHHHHHHTTTTTTCSGGGSCSCSTTHHHHHHH---HHHHHHHCSCSHHHHHHHTTTCSS---TTHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCCCCCCCCCCCCCChhHHHHHHHHH---HHHHHHHhHHHHHHHHHhcCCCCc---cHHHHHHHH
Confidence 4457899999999971 2333444555433 333322211122233333212111 224678888
Q ss_pred HHHhcccC
Q 026233 229 LRSYRERS 236 (241)
Q Consensus 229 ~~~~~~~~ 236 (241)
.++.+...
T Consensus 88 a~elF~dG 95 (188)
T 1o0l_A 88 SDELFQGG 95 (188)
T ss_dssp HHHHSSSC
T ss_pred HHHHhcCC
Confidence 88888643
No 16
>3ng9_A Capsid protein; beta barrel, single-stranded DNA V parvovirus, icosahedral virus; HET: ADE; 2.50A {Adeno-associated virus - 1} PDB: 3kic_A* 3kie_A* 3j1q_A 3oah_A* 1vu0_U 1vu1_o 3tsx_A 3shm_A 1lp3_A 3j1s_A 2qa0_A 3ra2_A 3ra4_A* 3ra8_A* 3ra9_A* 3raa_A* 3ux1_A
Probab=25.85 E-value=23 Score=35.94 Aligned_cols=16 Identities=13% Similarity=0.391 Sum_probs=10.4
Q ss_pred ccccChHHHHHHHHHh
Q 026233 217 TWFDGPEKYRRMLRSY 232 (241)
Q Consensus 217 tww~~p~k~~~~~~~~ 232 (241)
.+|-+|..|.+++.+|
T Consensus 289 ~~hFSP~DwQ~Lin~~ 304 (736)
T 3ng9_A 289 HCHFSPRDWQRLINNN 304 (736)
T ss_dssp GGTCCHHHHHHHHHHE
T ss_pred eeccCHHHHHHHHHhc
Confidence 3456677777777665
No 17
>3nwm_A Peptide/beta-2microglobulin/MHC class I H-2KD CHI protein; peptide-MHC complex, immunoglobulin fold system; 2.70A {Synthetic}
Probab=25.23 E-value=17 Score=33.69 Aligned_cols=6 Identities=33% Similarity=0.401 Sum_probs=4.0
Q ss_pred cccccc
Q 026233 19 RIRLVC 24 (241)
Q Consensus 19 ~~~~~~ 24 (241)
...|+|
T Consensus 46 ~~tL~C 51 (443)
T 3nwm_A 46 PNILNC 51 (443)
T ss_dssp CEEEEE
T ss_pred CEEEEE
Confidence 356888
No 18
>3ntt_A Capsid protein; gene therapy vector, cystic fibros sialic acid receptor, icosahedral virus; 3.45A {Adeno-associated virus - 5}
Probab=25.12 E-value=22 Score=36.08 Aligned_cols=15 Identities=20% Similarity=0.561 Sum_probs=9.3
Q ss_pred cccChHHHHHHHHHh
Q 026233 218 WFDGPEKYRRMLRSY 232 (241)
Q Consensus 218 ww~~p~k~~~~~~~~ 232 (241)
+|-+|..|.+++.+|
T Consensus 280 ~HFSP~DwQ~Lin~y 294 (724)
T 3ntt_A 280 SHWSPRDWQRLINNY 294 (724)
T ss_dssp GTCCHHHHHHHHHHE
T ss_pred eccCHHHHHHHHHhh
Confidence 455666666666655
No 19
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=24.86 E-value=31 Score=25.35 Aligned_cols=13 Identities=38% Similarity=0.376 Sum_probs=9.6
Q ss_pred hHHHhhhhhHhHh
Q 026233 161 ELTKLGKDYIKYL 173 (241)
Q Consensus 161 EL~~LarDyikYl 173 (241)
|.+++|.|||.+|
T Consensus 53 EtLr~Ai~YI~~L 65 (68)
T 2lfh_A 53 EILQRVIDYILDL 65 (68)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5667778888776
No 20
>2nl9_A Fusion protein consisting of induced myeloid LEUK differentiation protein MCL-1 homolog...; apoptosis, MCL-1, BIM; HET: MSE; 1.55A {Rattus norvegicus} PDB: 2nla_A 3d7v_A 3io9_A 3kj0_A 2pqk_A 3kj1_A 3kj2_A 3kz0_A 3mk8_A 1wsx_A 2jm6_B 2roc_A 2rod_A 2kbw_A 3mk8_B
Probab=24.62 E-value=2.6e+02 Score=22.04 Aligned_cols=70 Identities=17% Similarity=0.159 Sum_probs=36.7
Q ss_pred HhhhhhHhHhhcCccc-hhh-------hHHHHHHHHHHHHhhhchhhhhhhhhhhhccCCCccccChHHHHHHHHHhccc
Q 026233 164 KLGKDYIKYLLGGSKS-VRL-------SNAMDALESFWKTLSDNKLVYDKYWLEKEILNTTTWFDGPEKYRRMLRSYRER 235 (241)
Q Consensus 164 ~LarDyikYll~G~rs-vRL-------krAm~~W~~f~~~~t~~~~~~~~~~le~~i~~~ptww~~p~k~~~~~~~~~~~ 235 (241)
.|++|||.|-.+|... ..| .++...-++.-+.|.++.+..=++.+.+--++ |. +.-+.|..+.++.+..
T Consensus 10 ~L~~~yi~~~~~G~~~~~~~~~~~~~~~~~~~~Lr~i~dele~~~~~~f~~~~~~l~i~-~~--~~~~~f~~Va~elF~d 86 (157)
T 2nl9_A 10 EIISRYLREQATGSKDSKPLGEAGAAGRRALETLRRVGDGVQRNHETAFQGMLRKLDIK-NE--DDVKSLSRVMIHVFSD 86 (157)
T ss_dssp HHHHHHHHHHHHCC---------CHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHCCC-ST--TCCHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHcCCCCcCcCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-Cc--hHHHHHHHHHHHHhcC
Confidence 4778888887666532 111 24444555555555555332223344332122 22 3345689999998875
Q ss_pred C
Q 026233 236 S 236 (241)
Q Consensus 236 ~ 236 (241)
.
T Consensus 87 G 87 (157)
T 2nl9_A 87 G 87 (157)
T ss_dssp S
T ss_pred C
Confidence 4
No 21
>2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1
Probab=24.54 E-value=36 Score=24.71 Aligned_cols=49 Identities=14% Similarity=0.110 Sum_probs=27.1
Q ss_pred cchHHHHHHHHHHHHHHHH-HHHHhcchhHHHhhhhhHhHhhcCccc------hhhhHHHHHHHH
Q 026233 134 GIIDETVQVVLATIGFILL-YIYIIAGEELTKLGKDYIKYLLGGSKS------VRLSNAMDALES 191 (241)
Q Consensus 134 ~~~dE~~QvvLAtlgfIll-YI~Ii~GeEL~~LarDyikYll~G~rs------vRLkrAm~~W~~ 191 (241)
-.-+||++++...|--... |. -..| . ....+++|+=+ .+||+|+.+|=+
T Consensus 16 l~v~eA~~~L~~~L~~~~~~~~-~~~g-------~-~~v~IIhGkG~hS~~g~~~Lk~~V~~~L~ 71 (96)
T 2d9i_A 16 LHVDEALEHLMRVLEKKTEEFK-QNGG-------K-PYLSVITGRGNHSQGGVARIKPAVIKYLI 71 (96)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHH-HTTC-------C-SEEEEECCCSGGGTTCTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHH-hhCC-------C-eEEEEEECcCCCCCCCcchHHHHHHHHHh
Confidence 3578898888776543321 11 0011 1 11234455444 789999998843
No 22
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=22.91 E-value=27 Score=31.47 Aligned_cols=6 Identities=33% Similarity=0.634 Sum_probs=3.2
Q ss_pred hhcCCC
Q 026233 49 KCRQKN 54 (241)
Q Consensus 49 ~~~~~~ 54 (241)
+|...|
T Consensus 127 ~C~~PP 132 (279)
T 3p8c_D 127 VCEQPP 132 (279)
T ss_dssp HSBCCC
T ss_pred hcCCCC
Confidence 476544
No 23
>2l6f_A Focal adhesion kinase 1, linker1, paxillin, linke paxillin; FAT, FAK, LD2, LD4, fusion protein, chimera protei transferase,cell adhesion; NMR {Gallus gallus} PDB: 2l6g_A 2l6h_A
Probab=28.50 E-value=18 Score=31.89 Aligned_cols=21 Identities=43% Similarity=0.702 Sum_probs=11.2
Q ss_pred CCCCCCCCCCCCCcccchHHH
Q 026233 119 RGEGGSGESGDEGVSGIIDET 139 (241)
Q Consensus 119 Gggg~sG~Sede~~~~~~dE~ 139 (241)
||.|++|+|..-+-+.-+||.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~ 209 (215)
T 2l6f_A 189 GGSGGSGGSGGSSATRELDEL 209 (215)
Confidence 555566666554444445553
No 24
>3pgz_A Single-stranded DNA-binding protein; ssgcid, single-strand binding protein, structural genomics center for infectious disease; 2.10A {Bartonella henselae}
Probab=21.40 E-value=20 Score=30.48 Aligned_cols=10 Identities=20% Similarity=0.189 Sum_probs=7.6
Q ss_pred CCCceEEEeC
Q 026233 52 QKNTVACSLG 61 (241)
Q Consensus 52 ~~~~~vCl~g 61 (241)
+|+..|.+-|
T Consensus 94 ~KGs~V~VeG 103 (193)
T 3pgz_A 94 KKGSKIYIEG 103 (193)
T ss_dssp CTTCEEEEEE
T ss_pred CCCCEEEEEE
Confidence 4688888877
No 25
>2w3l_A BCL2-XL, apoptosis regulator BCL-2; HET: DRO; 2.10A {Homo sapiens} PDB: 2o2f_A*
Probab=21.17 E-value=1.6e+02 Score=22.89 Aligned_cols=14 Identities=29% Similarity=0.503 Sum_probs=11.7
Q ss_pred HhhhhhHhHhhcCc
Q 026233 164 KLGKDYIKYLLGGS 177 (241)
Q Consensus 164 ~LarDyikYll~G~ 177 (241)
.|++|||.|.++..
T Consensus 5 ~L~~dyi~~~l~~~ 18 (144)
T 2w3l_A 5 EIVMKYIHYKLSQR 18 (144)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCC
Confidence 58899999999743
No 26
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=20.51 E-value=43 Score=23.95 Aligned_cols=14 Identities=29% Similarity=0.342 Sum_probs=10.8
Q ss_pred hHHHhhhhhHhHhh
Q 026233 161 ELTKLGKDYIKYLL 174 (241)
Q Consensus 161 EL~~LarDyikYll 174 (241)
+.+++|.+||.||-
T Consensus 50 ~tLr~Ai~YI~~L~ 63 (68)
T 1mdy_A 50 EILRNAIRYIEGLQ 63 (68)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 56778888888874
Done!