Query 026233
Match_columns 241
No_of_seqs 32 out of 34
Neff 2.9
Searched_HMMs 13730
Date Mon Mar 25 08:43:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026233.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026233hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vdra_ c.71.1.1 (A:) Dihydrof 35.0 10 0.00076 28.0 2.6 50 15-64 54-103 (157)
2 d2d9ia1 d.68.8.1 (A:8-90) Nedd 18.7 24 0.0018 23.4 1.7 12 179-190 52-63 (83)
3 d1vi0a2 a.121.1.1 (A:78-194) H 18.4 69 0.005 20.7 4.1 44 136-179 72-116 (117)
4 d2ccya_ a.24.3.2 (A:) Cytochro 17.8 19 0.0014 25.7 1.0 19 216-234 72-90 (127)
5 d1ra9a_ c.71.1.1 (A:) Dihydrof 17.2 53 0.0039 23.9 3.6 46 15-64 53-98 (159)
6 d1gqea_ e.38.1.1 (A:) Polypept 16.1 60 0.0044 27.5 4.1 47 182-232 11-57 (362)
7 d1pe4a_ g.3.7.1 (A:) Scorpion 15.2 22 0.0016 24.5 0.7 8 214-221 53-60 (67)
8 d1mdya_ a.38.1.1 (A:) Myod B/H 14.8 33 0.0024 22.4 1.6 13 161-173 50-62 (68)
9 d1mixa2 b.55.1.5 (A:309-400) T 14.4 16 0.0011 25.1 -0.2 16 158-173 76-91 (92)
10 d1udxa1 b.117.1.1 (A:1-156) Ob 12.3 68 0.0049 24.2 3.0 7 105-111 12-18 (156)
No 1
>d1vdra_ c.71.1.1 (A:) Dihydrofolate reductase, prokaryotic type {Haloferax volcanii [TaxId: 2246]}
Probab=35.00 E-value=10 Score=28.04 Aligned_cols=50 Identities=16% Similarity=0.218 Sum_probs=23.7
Q ss_pred eCCCccccccccCcccccccccccccccccchhhhhcCCCceEEEeCCCC
Q 026233 15 HLPNRIRLVCERNTTRRTSLKLNATAYNHGLLALKCRQKNTVACSLGGKD 64 (241)
Q Consensus 15 ~~~~~~~~~~~~~~~p~~s~~L~~~~~~~~~~~l~~~~~~~~vCl~gGKg 64 (241)
+||||..+|-+.++-+........-....-.+.+.++.....++..||..
T Consensus 54 ~l~~R~~iV~s~~~~~~~~~~~~~~~s~~~a~~~~~~~~~~~i~IiGG~~ 103 (157)
T d1vdra_ 54 DLPGSAQIVMSRSERSFSVDTAHRAASVEEAVDIAASLDAETAYVIGGAA 103 (157)
T ss_dssp SCCSSSEEEECSSCCCCCSSSCCEESSHHHHHHHHHHTTCSCEEEEECHH
T ss_pred cccCcceeeeeecccccccCCeEEEeeHHHHHHHHhcCCCceEEEEechH
Confidence 68888888877665432211111111111111122333356788888843
No 2
>d2d9ia1 d.68.8.1 (A:8-90) Nedd4-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.66 E-value=24 Score=23.38 Aligned_cols=12 Identities=17% Similarity=0.080 Sum_probs=10.1
Q ss_pred chhhhHHHHHHH
Q 026233 179 SVRLSNAMDALE 190 (241)
Q Consensus 179 svRLkrAm~~W~ 190 (241)
..+||.|+.+|=
T Consensus 52 ~~~lk~~V~~~L 63 (83)
T d2d9ia1 52 VARIKPAVIKYL 63 (83)
T ss_dssp TTCHHHHHHHHH
T ss_pred cchHHHHHHHHH
Confidence 468999999994
No 3
>d1vi0a2 a.121.1.1 (A:78-194) Hypothetical transcriptional regulator YsiA {Bacillus subtilis [TaxId: 1423]}
Probab=18.38 E-value=69 Score=20.72 Aligned_cols=44 Identities=16% Similarity=0.254 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcch-hHHHhhhhhHhHhhcCccc
Q 026233 136 IDETVQVVLATIGFILLYIYIIAGE-ELTKLGKDYIKYLLGGSKS 179 (241)
Q Consensus 136 ~dE~~QvvLAtlgfIllYI~Ii~Ge-EL~~LarDyikYll~G~rs 179 (241)
..-+.+++++++..+..+-++-.+. .+-.++...+..++.|-++
T Consensus 72 ~~~~a~~i~g~i~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Gl~~ 116 (117)
T d1vi0a2 72 VRLARQMIFGTIDETVTTWVMNDQKYDLVALSNSVLELLVSGIHN 116 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCSCGGGGHHHHHHHHHHCSBC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhcC
Confidence 5677888888886665544443333 5889999999999988653
No 4
>d2ccya_ a.24.3.2 (A:) Cytochrome c' {Rhodospirillum molischianum [TaxId: 1083]}
Probab=17.83 E-value=19 Score=25.69 Aligned_cols=19 Identities=0% Similarity=0.039 Sum_probs=15.7
Q ss_pred CccccChHHHHHHHHHhcc
Q 026233 216 TTWFDGPEKYRRMLRSYRE 234 (241)
Q Consensus 216 ptww~~p~k~~~~~~~~~~ 234 (241)
|.||.+|++|......|..
T Consensus 72 ~~IW~~~~~F~~~~~~~~~ 90 (127)
T d2ccya_ 72 EAFGSKSAEFLEGWKALAT 90 (127)
T ss_dssp HHHTTTHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHH
Confidence 4699999999988877653
No 5
>d1ra9a_ c.71.1.1 (A:) Dihydrofolate reductase, prokaryotic type {Escherichia coli [TaxId: 562]}
Probab=17.25 E-value=53 Score=23.95 Aligned_cols=46 Identities=13% Similarity=0.114 Sum_probs=24.6
Q ss_pred eCCCccccccccCcccccccccccccccccchhhhhcCCCceEEEeCCCC
Q 026233 15 HLPNRIRLVCERNTTRRTSLKLNATAYNHGLLALKCRQKNTVACSLGGKD 64 (241)
Q Consensus 15 ~~~~~~~~~~~~~~~p~~s~~L~~~~~~~~~~~l~~~~~~~~vCl~gGKg 64 (241)
|||||.-+|.+.++-...... .................++..||..
T Consensus 53 ~Lp~R~niVls~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~ViGG~~ 98 (159)
T d1ra9a_ 53 PLPGRKNIILSSQPGTDDRVT----WVKSVDEAIAACGDVPEIMVIGGGR 98 (159)
T ss_dssp CCTTSCEEEECSSCCSCTTSE----EESSHHHHHHTTCSCSCEEECCCHH
T ss_pred hCCCCceEEEeecCCcccccc----chhhHHHHHHHhhcCCceEEEcCch
Confidence 799999999877764322111 1111111122122345688888843
No 6
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=16.06 E-value=60 Score=27.46 Aligned_cols=47 Identities=17% Similarity=0.247 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHHHHhhhchhhhhhhhhhhhccCCCccccChHHHHHHHHHh
Q 026233 182 LSNAMDALESFWKTLSDNKLVYDKYWLEKEILNTTTWFDGPEKYRRMLRSY 232 (241)
Q Consensus 182 LkrAm~~W~~f~~~~t~~~~~~~~~~le~~i~~~ptww~~p~k~~~~~~~~ 232 (241)
|+.....-+.+|+ +..+++- =..||+. ++.|.-|++|.++..+++++
T Consensus 11 L~~rl~~Lr~~fD-ld~kk~R--l~ELE~~-lsdP~fW~D~~kAqkl~KE~ 57 (362)
T d1gqea_ 11 LTERSDVLRGYLD-YDAKKER--LEEVNAE-LEQPDVWNEPERAQALGKER 57 (362)
T ss_dssp HHHHHHHHHHHTT-HHHHHHH--HHHHHHH-HHSGGGGGSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-HHHHHHH--HHHHHHH-hcCChhhhCHHHHHHHHHHH
Confidence 4444455555553 3333221 2334543 67899999999999988875
No 7
>d1pe4a_ g.3.7.1 (A:) Scorpion toxin {Mexican scorpion (Centruroides noxius) [TaxId: 6878]}
Probab=15.25 E-value=22 Score=24.49 Aligned_cols=8 Identities=38% Similarity=0.655 Sum_probs=6.0
Q ss_pred CCCccccC
Q 026233 214 NTTTWFDG 221 (241)
Q Consensus 214 ~~ptww~~ 221 (241)
++||||+.
T Consensus 53 ~~ptw~~~ 60 (67)
T d1pe4a_ 53 GTVLWGDS 60 (67)
T ss_dssp SCCCSCCS
T ss_pred CCceechh
Confidence 47888875
No 8
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=14.84 E-value=33 Score=22.36 Aligned_cols=13 Identities=31% Similarity=0.409 Sum_probs=9.6
Q ss_pred hHHHhhhhhHhHh
Q 026233 161 ELTKLGKDYIKYL 173 (241)
Q Consensus 161 EL~~LarDyikYl 173 (241)
.++..|.|||++|
T Consensus 50 ~iL~~Ai~YI~~L 62 (68)
T d1mdya_ 50 EILRNAIRYIEGL 62 (68)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4567788888776
No 9
>d1mixa2 b.55.1.5 (A:309-400) Talin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=14.43 E-value=16 Score=25.06 Aligned_cols=16 Identities=31% Similarity=0.634 Sum_probs=8.5
Q ss_pred cchhHHHhhhhhHhHh
Q 026233 158 AGEELTKLGKDYIKYL 173 (241)
Q Consensus 158 ~GeEL~~LarDyikYl 173 (241)
.|+||.+|+.+||.|+
T Consensus 76 q~~eI~~li~~yI~~i 91 (92)
T d1mixa2 76 EGEQIAQLIAGYIDII 91 (92)
T ss_dssp CHHHHHHHHHTTSCCC
T ss_pred CHHHHHHHHHHHHHHh
Confidence 3555555555555543
No 10
>d1udxa1 b.117.1.1 (A:1-156) Obg GTP-binding protein N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=12.26 E-value=68 Score=24.15 Aligned_cols=7 Identities=14% Similarity=0.193 Sum_probs=3.1
Q ss_pred CCCCCCC
Q 026233 105 GDGGKSP 111 (241)
Q Consensus 105 GG~GGn~ 111 (241)
+|.||++
T Consensus 12 ~G~GG~G 18 (156)
T d1udxa1 12 AGRGGDG 18 (156)
T ss_dssp CCCCCCC
T ss_pred ecCCCCC
Confidence 4444443
Done!