BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026234
(241 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0WKV8|ULP2A_ARATH Probable ubiquitin-like-specific protease 2A OS=Arabidopsis
thaliana GN=ULP2A PE=2 SV=2
Length = 774
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 149 KVLTWIKRKHIFSKKYVLVPIVCWRHWNLLILCNFG----GSFESKTRTPCMLLLDSLEM 204
+V W K +F K Y+ +PI C HW+L+I+C+ G E+ R PC+L LDS++
Sbjct: 375 RVQKWTKNVDLFEKDYIFIPINCSFHWSLVIICHPGELVPSHVENPQRVPCILHLDSIKG 434
Query: 205 SN 206
S+
Sbjct: 435 SH 436
>sp|Q8L7S0|ULP2B_ARATH Probable ubiquitin-like-specific protease 2B OS=Arabidopsis
thaliana GN=ULP2B PE=2 SV=3
Length = 931
Score = 47.4 bits (111), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 14/82 (17%)
Query: 139 DLYRKPSSKA-------KVLTWIKRKHIFSKKYVLVPIVCWRHWNLLILCNFGG------ 185
DL + PSS A +V W ++ +F K Y+ VP+ HW+L+++C+ G
Sbjct: 447 DLDKDPSSIADGKAAFLRVRKWTRKVDMFGKDYIFVPVNYNLHWSLIVICHPGEVANRTD 506
Query: 186 -SFESKTRTPCMLLLDSLEMSN 206
+ + PC+L +DS++ S+
Sbjct: 507 LDLDDSKKVPCILHMDSIKGSH 528
>sp|O13769|ULP2_SCHPO Ubiquitin-like-specific protease 2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ulp2 PE=1 SV=2
Length = 638
Score = 37.4 bits (85), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 150 VLTWIKRKHIFSKKYVLVPIVCWRHWNLLILCNF 183
V W ++ +F KKY++VPI HW L I+CN
Sbjct: 416 VRKWTQKVDLFHKKYIIVPINETFHWYLAIICNI 449
>sp|D3ZF42|SENP7_RAT Sentrin-specific protease 7 OS=Rattus norvegicus GN=Senp7 PE=2 SV=1
Length = 1037
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 149 KVLTWIKRKHIFSKKYVLVPIVCWRHWNLLILC 181
+V TW + +IF+K Y+ VP+ HW L ++C
Sbjct: 822 RVRTWTRHINIFNKDYIFVPVNESSHWYLAVIC 854
>sp|A7MBJ2|SENP7_BOVIN Sentrin-specific protease 7 OS=Bos taurus GN=SENP7 PE=2 SV=1
Length = 1047
Score = 36.2 bits (82), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 149 KVLTWIKRKHIFSKKYVLVPIVCWRHWNLLILC 181
+V TW + +IF+K Y+ VP+ HW L ++C
Sbjct: 832 RVRTWTRHINIFNKDYIFVPVNESSHWYLAVIC 864
>sp|Q9BQF6|SENP7_HUMAN Sentrin-specific protease 7 OS=Homo sapiens GN=SENP7 PE=1 SV=4
Length = 1050
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 149 KVLTWIKRKHIFSKKYVLVPIVCWRHWNLLILC 181
+V TW + +IF+K Y+ VP+ HW L ++C
Sbjct: 835 RVRTWTRHINIFNKDYIFVPVNESSHWYLAVIC 867
>sp|Q8BUH8|SENP7_MOUSE Sentrin-specific protease 7 OS=Mus musculus GN=Senp7 PE=2 SV=1
Length = 1037
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 149 KVLTWIKRKHIFSKKYVLVPIVCWRHWNLLILC 181
+V TW + +IF+K Y+ VP+ HW L ++C
Sbjct: 822 RVRTWTRHINIFNKDYIFVPVNESSHWYLAVIC 854
>sp|P40537|ULP2_YEAST Ubiquitin-like-specific protease 2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ULP2 PE=1 SV=1
Length = 1034
Score = 35.8 bits (81), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 148 AKVLTWIKRKHIFSKKYVLVPIVCWRHWNLLILCNFGG--SFESKTRTPCMLLLDSLEMS 205
+ V W+ +FSKKYV++PI HW I+ N F + D + ++
Sbjct: 505 SNVKKWVNNTDLFSKKYVVIPINISYHWFSCIITNLDAILDFHQNKDKNDAINSDEISIN 564
Query: 206 NP 207
NP
Sbjct: 565 NP 566
>sp|Q9EQE1|SENP2_RAT Sentrin-specific protease 2 OS=Rattus norvegicus GN=Senp2 PE=1 SV=1
Length = 588
Score = 34.3 bits (77), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 11/79 (13%)
Query: 126 KKAGFTYLDSLWFDLYRKPSSKA--KVLTWIKRKHIFSKKYVLVPIVCWRHWNLLILCNF 183
KK G+ L +L Y K S V W K ++F ++ VLVPI HW+L+++
Sbjct: 427 KKQGYPALHALSTFFYPKLKSGGYQAVKRWTKGVNLFDQELVLVPIHRKVHWSLVVM--- 483
Query: 184 GGSFESKTRTPCMLLLDSL 202
R C+ LDS+
Sbjct: 484 ------DLRKKCLKYLDSM 496
>sp|Q6P7W0|SENP6_MOUSE Sentrin-specific protease 6 OS=Mus musculus GN=Senp6 PE=1 SV=3
Length = 1132
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 148 AKVLTWIKRKHIFSKKYVLVPIVCWRHWNLLILC 181
+V TW + IF K ++ VP+ HW L ++C
Sbjct: 759 GRVKTWTRHVDIFEKDFIFVPLNEAAHWFLAVVC 792
>sp|Q9GZR1|SENP6_HUMAN Sentrin-specific protease 6 OS=Homo sapiens GN=SENP6 PE=1 SV=2
Length = 1112
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 148 AKVLTWIKRKHIFSKKYVLVPIVCWRHWNLLILC 181
+V TW + IF K ++ VP+ HW L ++C
Sbjct: 739 GRVKTWTRHVDIFEKDFIFVPLNEAAHWFLAVVC 772
>sp|Q91ZX6|SENP2_MOUSE Sentrin-specific protease 2 OS=Mus musculus GN=Senp2 PE=1 SV=2
Length = 588
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 11/79 (13%)
Query: 126 KKAGFTYLDSLWFDLYRKPSSKA--KVLTWIKRKHIFSKKYVLVPIVCWRHWNLLILCNF 183
KK G+ L + Y K S V W K ++F ++ VLVPI HW+L+++
Sbjct: 427 KKQGYPALHAFSTFFYPKLKSGGYQAVKRWTKGVNLFEQELVLVPIHRKVHWSLVVM--- 483
Query: 184 GGSFESKTRTPCMLLLDSL 202
R C+ LDS+
Sbjct: 484 ------DLRKKCLKYLDSM 496
>sp|Q9HC62|SENP2_HUMAN Sentrin-specific protease 2 OS=Homo sapiens GN=SENP2 PE=1 SV=3
Length = 589
Score = 32.3 bits (72), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 11/80 (13%)
Query: 125 DKKAGFTYLD--SLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVLVPIVCWRHWNLLILCN 182
+KK G+ L S +F K V W K ++F ++ +LVPI HW+L+++
Sbjct: 427 NKKQGYPALHVFSTFFYPKLKSGGYQAVKRWTKGVNLFEQEIILVPIHRKVHWSLVVI-- 484
Query: 183 FGGSFESKTRTPCMLLLDSL 202
R C+ LDS+
Sbjct: 485 -------DLRKKCLKYLDSM 497
>sp|Q09275|ULP4_CAEEL Putative thiol protease ulp-4 OS=Caenorhabditis elegans GN=ulp-4
PE=3 SV=2
Length = 382
Score = 32.3 bits (72), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Query: 163 KYVLVPIVCWRHWNLLILCNFGGSFESKTRT 193
Y++VP+ W HW+L ++C+ F ++ RT
Sbjct: 224 DYIVVPVNEWEHWSLAVICH---PFTAQART 251
>sp|Q5R7K7|SENP2_PONAB Sentrin-specific protease 2 OS=Pongo abelii GN=SENP2 PE=2 SV=1
Length = 589
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 11/80 (13%)
Query: 125 DKKAGFTYLD--SLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVLVPIVCWRHWNLLILCN 182
+KK G+ L S +F K V W K ++F ++ +LVPI HW+L+++
Sbjct: 427 NKKQGYPALHVFSTFFYPKLKSGGYQAVKRWTKGVNLFEQEIILVPIHRKVHWSLVVI-- 484
Query: 183 FGGSFESKTRTPCMLLLDSL 202
R C+ LDS+
Sbjct: 485 -------DLRKKCLKYLDSM 497
>sp|A4WE11|AAS_ENT38 Bifunctional protein aas OS=Enterobacter sp. (strain 638) GN=aas
PE=3 SV=1
Length = 719
Score = 31.6 bits (70), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 10/90 (11%)
Query: 54 NFELTAPCFLGTFSCRRRSKRRVKCKNTSLIKGKNSS--SVKCKDMITKRKKNKLDSGKF 111
N ++A G S R + T+ +KG S+ + + K + T R+ LD GK
Sbjct: 264 NAGISAAVIFGAVS---RGRIPAMMNYTAGVKGLTSAITAAEIKTVFTSRQF--LDKGKL 318
Query: 112 EHLLDNLWR---SFSEDKKAGFTYLDSLWF 138
HL + L + F ED KA T D LW
Sbjct: 319 WHLPEQLKQVRWVFLEDLKAEVTTADKLWI 348
>sp|Q2PS26|ULP1D_ARATH Ubiquitin-like-specific protease 1D OS=Arabidopsis thaliana
GN=ULP1D PE=1 SV=1
Length = 584
Score = 31.6 bits (70), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 153 WIKRKHIFSKKYVLVPIVCWRHWNLLILCNFGGSFESKTRTPCMLLLDSL 202
W K +F K Y+ +PI HW+L+I+C ES +L LDSL
Sbjct: 417 WWKGIDLFRKAYIFIPIHEDLHWSLVIVCIPDKKDESGL---TILHLDSL 463
>sp|P04514|NSP3_ROTBU Non-structural protein 3 OS=Rotavirus A (strain Cow/United
Kingdom/UK/1975 G6-P7[5]-I2-R2-C2-M2-A3-N2-T7-E2-H3)
PE=3 SV=1
Length = 313
Score = 31.2 bits (69), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 67/153 (43%), Gaps = 25/153 (16%)
Query: 78 CKNTSLIKGKNSSSVKCKDMITKRKKNKLDSGKFEHLLDNLWRSFSEDK--------KAG 129
C + I GK+SS +KC T+ K+K++ G E +D+ SF E+K K+
Sbjct: 123 CFSVKRIPGKSSSVIKC----TRLMKDKIERGAVE--VDD---SFVEEKMEVDTVDWKSR 173
Query: 130 FTYLDSLWFDLYRKPSSKAKVLTWIKR-KHIFSKKYVLVPIVCWRHWNLLILCNFGGSFE 188
+ L+ + L K K TW+++ K + Y L ++ + + L N+ E
Sbjct: 174 YDQLERRFESL--KQRVNEKYTTWVQKAKKVNENMYSLQNVISQQQNQIADLQNYCSKLE 231
Query: 189 SKTRTPCMLLLDSLE-----MSNPWRFEPDIRK 216
+ + L+ S+E M P + DI +
Sbjct: 232 ADLQNKVGSLVSSVEWYLKSMELPDEVKTDIEQ 264
>sp|Q65701|NSP3_ROTBN Non-structural protein 3 OS=Rotavirus A (strain Cow/United
States/NCDV-Lincoln/1969
G6-P6[1]-I2-R2-C2-M2-Ax-N2-T6-E2-Hx) PE=2 SV=1
Length = 313
Score = 30.8 bits (68), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 67/153 (43%), Gaps = 25/153 (16%)
Query: 78 CKNTSLIKGKNSSSVKCKDMITKRKKNKLDSGKFEHLLDNLWRSFSEDK--------KAG 129
C N + GK+SS +KC T+ ++K++ G+ E +D+ SF E+K K+
Sbjct: 123 CFNVKRVPGKSSSIIKC----TRLMRDKIERGEVE--VDD---SFVEEKMEVDTIDWKSR 173
Query: 130 FTYLDSLWFDLYRKPSSKAKVLTWIKR-KHIFSKKYVLVPIVCWRHWNLLILCNFGGSFE 188
+ L+ + L K K +W+++ K + Y L ++ + + L N+ E
Sbjct: 174 YEQLEKRFESL--KQRVNEKYTSWVQKAKKVNENMYSLQNVISQQQSQIADLQNYCNKLE 231
Query: 189 SKTRTPCMLLLDSLE-----MSNPWRFEPDIRK 216
+ L+ S+E M P + DI +
Sbjct: 232 VDLQNKISSLVSSVEWYLKSMELPDEIKTDIEQ 264
>sp|Q86504|NSP3_ROTRF Non-structural protein 3 OS=Rotavirus A (strain Cow/France/RF/1975
G6-P6[1]-I2-R2-C2-M2-A3-N2-T6-E2-H3) PE=1 SV=1
Length = 313
Score = 30.8 bits (68), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 67/153 (43%), Gaps = 25/153 (16%)
Query: 78 CKNTSLIKGKNSSSVKCKDMITKRKKNKLDSGKFEHLLDNLWRSFSEDK--------KAG 129
C N + GK+SS +KC T+ ++K++ G+ E +D+ SF E+K K+
Sbjct: 123 CFNVKRVPGKSSSIIKC----TRLMRDKIERGEVE--VDD---SFVEEKMEVDTIDWKSR 173
Query: 130 FTYLDSLWFDLYRKPSSKAKVLTWIKR-KHIFSKKYVLVPIVCWRHWNLLILCNFGGSFE 188
+ L+ + L K K +W+++ K + Y L ++ + + L N+ E
Sbjct: 174 YEQLEKRFESL--KQRVNEKYTSWVQKAKKVNENMYSLQNVISQQQSQIADLQNYCNKLE 231
Query: 189 SKTRTPCMLLLDSLE-----MSNPWRFEPDIRK 216
+ L+ S+E M P + DI +
Sbjct: 232 VDLQNKISSLVSSVEWYLKSMELPDEIKTDIEQ 264
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.137 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,721,569
Number of Sequences: 539616
Number of extensions: 3617287
Number of successful extensions: 9802
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 9780
Number of HSP's gapped (non-prelim): 41
length of query: 241
length of database: 191,569,459
effective HSP length: 114
effective length of query: 127
effective length of database: 130,053,235
effective search space: 16516760845
effective search space used: 16516760845
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)