Query 026234
Match_columns 241
No_of_seqs 132 out of 406
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 08:44:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026234.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026234hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3eay_A Sentrin-specific protea 100.0 5.4E-42 1.9E-46 316.2 8.8 146 81-226 20-238 (323)
2 2xph_A Sentrin-specific protea 100.0 5.8E-33 2E-37 243.0 8.9 128 88-226 42-169 (238)
3 1th0_A SMT3-, sentrin-specific 100.0 1.1E-32 3.8E-37 239.3 8.7 129 87-226 29-157 (226)
4 1euv_A ULP1 protease; SUMO hyd 100.0 4.4E-31 1.5E-35 228.8 8.2 126 86-226 29-160 (221)
5 2bkr_A Sentrin-specific protea 100.0 2.9E-30 9.9E-35 221.5 6.8 129 81-223 4-145 (212)
6 2oix_A Xanthomonas outer prote 99.9 3.7E-25 1.3E-29 188.0 6.3 112 103-222 2-119 (186)
7 4ekf_A Adenain; alpha and beta 24.1 1.3E+02 0.0044 25.9 5.6 46 172-234 52-97 (204)
8 2cxa_A Leucyl/phenylalanyl-tRN 7.4 2E+02 0.0068 25.6 2.2 19 101-119 124-142 (256)
9 1z8u_A Alpha-hemoglobin stabil 7.3 96 0.0033 23.8 0.1 14 110-123 44-57 (102)
10 1zvp_A Hypothetical protein VC 6.6 1.7E+02 0.0058 23.1 1.2 11 160-170 108-118 (133)
No 1
>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens}
Probab=100.00 E-value=5.4e-42 Score=316.16 Aligned_cols=146 Identities=21% Similarity=0.374 Sum_probs=124.9
Q ss_pred ceeee----cccceeeeeccceecccCCCCChHHHHHHHHHHH-hhcCcccCCcEEEEeccccccccCCC----------
Q 026234 81 TSLIK----GKNSSSVKCKDMITKRKKNKLDSGKFEHLLDNLW-RSFSEDKKAGFTYLDSLWFDLYRKPS---------- 145 (241)
Q Consensus 81 ~~l~y----gk~~~~v~~~D~i~l~~~~wLND~IInFYl~~L~-~~~~~~~~~~~h~FnSFFy~kL~~~~---------- 145 (241)
..++| +++.++|+.+|+.+|++++||||+||||||+||. ++..++..+++|+||||||++|....
T Consensus 20 ~~~~yP~~~~k~~i~it~~Dl~~L~~~~wLND~IInFyl~~L~~e~~~~~~~~r~h~FnSFFy~kL~~~~~~~~~~~~~~ 99 (323)
T 3eay_A 20 KLIVYPPPPTKGGLGVTNEDLECLEEGEFLNDVIIDFYLKYLILEKASDELVERSHIFSSFFYKCLTRKENNLTEDNPNL 99 (323)
T ss_dssp EEEEESCTTSSSCEEEEHHHHHTTSTTCCCCHHHHHHHHHHHHHHTSCHHHHHTEEECCTHHHHHHSCC--------CCS
T ss_pred eeEEeCCCCCCCceEEEHHHHHhhCCCCCcCHHHHHHHHHHHHhhhccccccCcEEEEchHHHHHHHhcccccccccccc
Confidence 44666 5778999999999999999999999999999996 56655566789999999999997531
Q ss_pred -----CccchhhhhcccCCcccceEEEeccCCCceeEEEEecCCCCC--------------------------C------
Q 026234 146 -----SKAKVLTWIKRKHIFSKKYVLVPIVCWRHWNLLILCNFGGSF--------------------------E------ 188 (241)
Q Consensus 146 -----~y~~VkrWTKkvDIFskdyIfVPIn~~~HWsL~IIc~p~~~~--------------------------~------ 188 (241)
+|++|+|||+++|||++||||||||++.||+|||||+|+... +
T Consensus 100 s~~~~~y~~VrrWtrkvdlf~kD~I~IPIn~~~HW~LaVI~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 179 (323)
T 3eay_A 100 SMAQRRHKRVRTWTRHINIFNKDYIFVPVNESSHWYLAVICFPWLEEAVYEDFPQTVSQQSQAQQSQNDNKTIDNDLRTT 179 (323)
T ss_dssp CHHHHHHTTSGGGGTTCCGGGCSEEEEEEEETTEEEEEEEECTTCSSCBCC-----------------------------
T ss_pred hhHHHHHHHHHHHHhhcccccCCEEEEecCCCCceEEEEEecCCcccccccccccccccccccccccccccccccccccc
Confidence 489999999999999999999999999999999999997520 0
Q ss_pred ---------------------CCCCCceEEEEeCCCCCCCCChHHHHHHHHHHHHhhhh
Q 026234 189 ---------------------SKTRTPCMLLLDSLEMSNPWRFEPDIRKYVTLYFFGVF 226 (241)
Q Consensus 189 ---------------------~~~~~p~Il~lDSL~~~~~~~l~~~IR~YL~~E~k~~~ 226 (241)
...+.|||+|||||++++...+.+.||+||++||+++.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~k~pcIl~lDSL~~~~~~~~~~~Lr~YL~~E~~~k~ 238 (323)
T 3eay_A 180 STLSLSAEDSQSTESNMSVPKKMCKRPCILILDSLKAASVQNTVQNLREYLEVEWEVKL 238 (323)
T ss_dssp --------------------CCCCBCSEEEEECSSCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccCCCCeEEEEECCCCCCcchHHHHHHHHHHHHHHhhc
Confidence 01257899999999997556778899999999999874
No 2
>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A
Probab=99.98 E-value=5.8e-33 Score=243.03 Aligned_cols=128 Identities=19% Similarity=0.208 Sum_probs=114.7
Q ss_pred cceeeeeccceecccCCCCChHHHHHHHHHHHhhcCcccCCcEEEEeccccccccCCCCccchhhhhcccCCcccceEEE
Q 026234 88 NSSSVKCKDMITKRKKNKLDSGKFEHLLDNLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVLV 167 (241)
Q Consensus 88 ~~~~v~~~D~i~l~~~~wLND~IInFYl~~L~~~~~~~~~~~~h~FnSFFy~kL~~~~~y~~VkrWTKkvDIFskdyIfV 167 (241)
..++|+.+|+.+|.+++||||+|||||+++|.++...+..+++|+||||||++|.. .+|++|+|||+++|||++|+|||
T Consensus 42 ~~~~l~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~~~~~~~~~f~sff~~~l~~-~~~~~v~~w~~~~~l~~~~~i~i 120 (238)
T 2xph_A 42 FRLTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEKGLPSVHAFNTFFFTKLKT-AGYQAVKRWTKKVDVFSVDILLV 120 (238)
T ss_dssp TTEEECHHHHHTTSTTCCCCHHHHHHHHHHHHHHTTSTTSCCEEECCTTTTHHHHT-TCHHHHTTTTTTCCGGGSSEEEE
T ss_pred CCcEEeHHHHhhcCCCCccCHHHHHHHHHHHHHhhhhcCCCceeeeecHHHHHhhh-cccHHHHHHhccCCcccCCEEEE
Confidence 45789999999999999999999999999998876555577899999999999985 47999999999999999999999
Q ss_pred eccCCCceeEEEEecCCCCCCCCCCCceEEEEeCCCCCCCCChHHHHHHHHHHHHhhhh
Q 026234 168 PIVCWRHWNLLILCNFGGSFESKTRTPCMLLLDSLEMSNPWRFEPDIRKYVTLYFFGVF 226 (241)
Q Consensus 168 PIn~~~HWsL~IIc~p~~~~~~~~~~p~Il~lDSL~~~~~~~l~~~IR~YL~~E~k~~~ 226 (241)
|||.+.||+|+||+.+. ++|.|||||++.+.. ....|++||..||+.+.
T Consensus 121 Pin~~~HW~L~vi~~~~---------~~i~~~DSl~~~~~~-~~~~l~~~L~~e~~~k~ 169 (238)
T 2xph_A 121 PIHLGVHWCLAVVDFRK---------KNITYYDSMGGINNE-ACRILLQYLKQESIDKK 169 (238)
T ss_dssp EEEETTEEEEEEEETTT---------TEEEEECTTCCCCHH-HHHHHHHHHHHHHHHHH
T ss_pred cccCCCceEEEEEEccc---------ceEEEeecccCCCHH-HHHHHHHHHHHHHHHhc
Confidence 99999999999998765 899999999997544 45689999999998763
No 3
>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A
Probab=99.97 E-value=1.1e-32 Score=239.25 Aligned_cols=129 Identities=16% Similarity=0.245 Sum_probs=115.2
Q ss_pred ccceeeeeccceecccCCCCChHHHHHHHHHHHhhcCcccCCcEEEEeccccccccCCCCccchhhhhcccCCcccceEE
Q 026234 87 KNSSSVKCKDMITKRKKNKLDSGKFEHLLDNLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVL 166 (241)
Q Consensus 87 k~~~~v~~~D~i~l~~~~wLND~IInFYl~~L~~~~~~~~~~~~h~FnSFFy~kL~~~~~y~~VkrWTKkvDIFskdyIf 166 (241)
...++|+..|+.+|.+++||||+|||||+++|.++..++..+++|+||||||++|.+. +|++|+|||+++|||++|+||
T Consensus 29 ~~~~~l~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~~~~~~~~~f~s~f~~~l~~~-~~~~v~~w~~~~~l~~~~~i~ 107 (226)
T 1th0_A 29 AFKLRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQGYPALHVFSTFFYPKLKSG-GYQAVKRWTKGVNLFEQEIIL 107 (226)
T ss_dssp ETTEEEEHHHHGGGSTTCCCCHHHHHHHHHHHHHHHHHHTCCCEEECCTTHHHHHHHH-TGGGTGGGGTTCCGGGSSEEE
T ss_pred cCCeEEEHHHHhhcCCCCccChHHHHHHHHHHHHhhhhccCCcEEEEeHHHHHHhhhc-ccHHHHHHhhcCCcccCCEEE
Confidence 3568899999999999999999999999999987765555678999999999998753 799999999999999999999
Q ss_pred EeccCCCceeEEEEecCCCCCCCCCCCceEEEEeCCCCCCCCChHHHHHHHHHHHHhhhh
Q 026234 167 VPIVCWRHWNLLILCNFGGSFESKTRTPCMLLLDSLEMSNPWRFEPDIRKYVTLYFFGVF 226 (241)
Q Consensus 167 VPIn~~~HWsL~IIc~p~~~~~~~~~~p~Il~lDSL~~~~~~~l~~~IR~YL~~E~k~~~ 226 (241)
||||.+.||+|+||+.+. ++|.|||||++.+ ..+.+.|++||..|++.+.
T Consensus 108 iPin~~~HW~l~vi~~~~---------~~i~~~DSl~~~~-~~~~~~l~~~l~~e~~~k~ 157 (226)
T 1th0_A 108 VPIHRKVHWSLVVIDLRK---------KCLKYLDSMGQKG-HRICEILLQYLQDESKTKR 157 (226)
T ss_dssp EEEEETTEEEEEEEETTT---------TEEEEECTTCCCC-HHHHHHHHHHHHHHHHHHT
T ss_pred EeEEeCcEEEEEEEEcCC---------CceEEEcCCCCCc-hHHHHHHHHHHHHHHHHhc
Confidence 999999999999998654 8999999999975 4466789999999998764
No 4
>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A
Probab=99.97 E-value=4.4e-31 Score=228.78 Aligned_cols=126 Identities=18% Similarity=0.244 Sum_probs=109.8
Q ss_pred cccceeeeeccceecccCCCCChHHHHHHHHHHHhhcCcccCCcEEEEeccccccccCCCCccchhhhhc--ccCCcccc
Q 026234 86 GKNSSSVKCKDMITKRKKNKLDSGKFEHLLDNLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIK--RKHIFSKK 163 (241)
Q Consensus 86 gk~~~~v~~~D~i~l~~~~wLND~IInFYl~~L~~~~~~~~~~~~h~FnSFFy~kL~~~~~y~~VkrWTK--kvDIFskd 163 (241)
++..++|+..|+.+|.+++||||+||||||++|.+.. +++|+||||||++|.+ .+|++|+|||+ ++|||++|
T Consensus 29 ~~~~i~i~~~Dl~~L~~~~wLND~vI~fy~~~l~~~~-----~~~~~f~s~f~~~l~~-~~~~~v~rw~~~~~~~~~~~~ 102 (221)
T 1euv_A 29 NRDNIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKST-----PNTVAFNSFFYTNLSE-RGYQGVRRWMKRKKTQIDKLD 102 (221)
T ss_dssp EETTEEEEHHHHGGGSTTCCCBHHHHHHHHHHHHHHS-----TTEEECCTHHHHHHHH-HTGGGTTTTTGGGTSCGGGCS
T ss_pred cCCCeEEEHHHHhhhcCCCCCCHHHHHHHHHHHHhcC-----CCeEEEEcHHHHHhhh-hccHHHHHHHHhccCCcccCC
Confidence 5567899999999999999999999999999997642 5799999999999875 47999999998 57999999
Q ss_pred eEEEeccCC-CceeEEEEecCCCCCCCCCCCceEEEEeCCCCCCCC---ChHHHHHHHHHHHHhhhh
Q 026234 164 YVLVPIVCW-RHWNLLILCNFGGSFESKTRTPCMLLLDSLEMSNPW---RFEPDIRKYVTLYFFGVF 226 (241)
Q Consensus 164 yIfVPIn~~-~HWsL~IIc~p~~~~~~~~~~p~Il~lDSL~~~~~~---~l~~~IR~YL~~E~k~~~ 226 (241)
+||||||.+ .||+|+||+.+. ++|.+||||++.... .+.+.|++||.+|++.+.
T Consensus 103 ~i~iPin~~~~HW~l~vi~~~~---------~~i~~~DSl~~~~~~~~~~i~~~l~~~l~~e~~~~~ 160 (221)
T 1euv_A 103 KIFTPINLNQSHWALGIIDLKK---------KTIGYVDSLSNGPNAMSFAILTDLQKYVMEESKHTI 160 (221)
T ss_dssp EEEEEEEETTTEEEEEEEETTT---------TEEEEECSSCCSCCHHHHHHHHHHHHHHHHHTTSSS
T ss_pred EEEEEEEcCCCeEEEEEEEcCC---------CEEEEEecCCCCCcchHHHHHHHHHHHHHHHHHHhc
Confidence 999999985 899999999875 899999999965322 356789999999998654
No 5
>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A
Probab=99.96 E-value=2.9e-30 Score=221.51 Aligned_cols=129 Identities=14% Similarity=0.150 Sum_probs=109.1
Q ss_pred ceeeecccceeeeeccceecccCCCCChHHHHHHHHHHHhhcCcccCCcEEEEe---ccccccccCCCCccchhhhhccc
Q 026234 81 TSLIKGKNSSSVKCKDMITKRKKNKLDSGKFEHLLDNLWRSFSEDKKAGFTYLD---SLWFDLYRKPSSKAKVLTWIKRK 157 (241)
Q Consensus 81 ~~l~ygk~~~~v~~~D~i~l~~~~wLND~IInFYl~~L~~~~~~~~~~~~h~Fn---SFFy~kL~~~~~y~~VkrWTKkv 157 (241)
+++.|+ .++|+.+|+.+|.+++||||+||||||++|.++..++..+++|+|| ||||..+. .|++|++||+++
T Consensus 4 ~~l~~~--~~~l~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~~~~~~~~~~~p~~s~f~~~~~---~~~~v~~~~~~~ 78 (212)
T 2bkr_A 4 VVLSYM--DSLLRQSDVSLLDPPSWLNDHIIGFAFEYFANSQFHDSSDHVSFISPEVTQFIKCTS---NPAEIAMFLEPL 78 (212)
T ss_dssp EEEEET--TEEEEHHHHHTTSTTSCCBHHHHHHHHHHHHHTTTGGGTTTEEEECHHHHHHHHHCC---CHHHHHHHHGGG
T ss_pred EEEEEC--CEEEeHHHHhhcCCCCCcCHHHHHHHHHHHHHhhccCCCCcEEEEChHHHHHHHhCC---CHHHHHHHhccc
Confidence 444454 4789999999999999999999999999999887555578899999 99996654 478999999999
Q ss_pred CCcccceEEEeccC-------CCceeEEEEecCCCCCCCCCCCceEEEEeCCCCCCCCC---hHHHHHHHHHHHHh
Q 026234 158 HIFSKKYVLVPIVC-------WRHWNLLILCNFGGSFESKTRTPCMLLLDSLEMSNPWR---FEPDIRKYVTLYFF 223 (241)
Q Consensus 158 DIFskdyIfVPIn~-------~~HWsL~IIc~p~~~~~~~~~~p~Il~lDSL~~~~~~~---l~~~IR~YL~~E~k 223 (241)
|+|++|+||||||. +.||+|+||+.+. ++|.|||||++.+... +.+.|+.||..|++
T Consensus 79 ~l~~~~~i~iPIn~n~~~~~~~~HW~L~vi~~~~---------~~i~~~DSl~~~n~~~~~~l~~~l~~~l~~~~~ 145 (212)
T 2bkr_A 79 DLPNKRVVFLAINDNSNQAAGGSHWSLLVYLQDK---------NSFFHYDSHSRSNSVHAKQVAEKLEAFLGRKGD 145 (212)
T ss_dssp TGGGCSEEEEEEECCCSSSSBCCCEEEEEEEGGG---------TEEEEECSSTTTTHHHHHHHHHHHHHHHSCTTC
T ss_pred ccccCCEEEEEEecCCCCCCCCCCeEEEEEEecC---------CeEEEEeCCCCCCHHHHHHHHHHHHHHhCCccc
Confidence 99999999999995 7999999999876 7999999999875432 45567777777665
No 6
>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A
Probab=99.91 E-value=3.7e-25 Score=188.03 Aligned_cols=112 Identities=18% Similarity=0.254 Sum_probs=85.2
Q ss_pred CCCCChHHHHHHHHHHHhhcCcccC-CcEEEEeccccccccCC--CCccchhhhhcccCCcccceEEEeccC-CCceeEE
Q 026234 103 KNKLDSGKFEHLLDNLWRSFSEDKK-AGFTYLDSLWFDLYRKP--SSKAKVLTWIKRKHIFSKKYVLVPIVC-WRHWNLL 178 (241)
Q Consensus 103 ~~wLND~IInFYl~~L~~~~~~~~~-~~~h~FnSFFy~kL~~~--~~y~~VkrWTKkvDIFskdyIfVPIn~-~~HWsL~ 178 (241)
++||||+||||||+||.++..++.. .++|+||+++...+... .+|.+|.+|++..|+ +|+||||||. +.||+|+
T Consensus 2 ~~WLND~iI~fy~~~L~~~~~~~~~~~~v~f~~p~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~i~iPin~~~~HWsLl 79 (186)
T 2oix_A 2 TSWLLDGHLRAYTDDLARRLRGEPNAHLLHFADSQVVTMLSSADPDQQARAQRLLAGDDI--PPIVFLPINQPNAHWSLL 79 (186)
T ss_dssp CCCCCHHHHHHHHHHHHHHTTTSTTGGGEEECCHHHHHHTTCSSHHHHHHHHHHHHSTTS--CSEEEEEEEETTTEEEEE
T ss_pred CCCcChHHHHHHHHHHHHHhhhccCcceEEEECHHHHHHHHhCCHHHHHHHHHHcccccc--cCEEEEEEeCCCCccEEE
Confidence 6899999999999999988644333 45999996544433322 256788888887776 9999999998 7999999
Q ss_pred EEecCCCCCCCCCCCceEEEEeCCCCCCCC--ChHHHHHHHHHHHH
Q 026234 179 ILCNFGGSFESKTRTPCMLLLDSLEMSNPW--RFEPDIRKYVTLYF 222 (241)
Q Consensus 179 IIc~p~~~~~~~~~~p~Il~lDSL~~~~~~--~l~~~IR~YL~~E~ 222 (241)
||+.+++. -|+|.|||||++.++. .+.+.|++||..+.
T Consensus 80 vi~~~~~~------~~~~~~~DSl~~~~~~~~~l~~~l~~~l~~~~ 119 (186)
T 2oix_A 80 VVDRRNKD------AVAAYHYDSMAQKDPQQRYLADMAAYHLGLDY 119 (186)
T ss_dssp EEECSSTT------SCEEEEECCCSSCCHHHHHHHHHHHHHTTCCG
T ss_pred EEECCCCe------eeeeEEEcCCCCCCHHHHHHHHHHHHHhCCCc
Confidence 99998743 3778999999996432 35556677766554
No 7
>4ekf_A Adenain; alpha and beta protein (A+B), hydrolase; HET: CSD; 0.98A {Human adenovirus 2} PDB: 1nln_A 1avp_A
Probab=24.05 E-value=1.3e+02 Score=25.95 Aligned_cols=46 Identities=17% Similarity=0.320 Sum_probs=34.5
Q ss_pred CCceeEEEEecCCCCCCCCCCCceEEEEeCCCCCCCCChHHHHHHHHHHHHhhhhhcccccce
Q 026234 172 WRHWNLLILCNFGGSFESKTRTPCMLLLDSLEMSNPWRFEPDIRKYVTLYFFGVFVCLCTSII 234 (241)
Q Consensus 172 ~~HWsL~IIc~p~~~~~~~~~~p~Il~lDSL~~~~~~~l~~~IR~YL~~E~k~~~~~~~~~~~ 234 (241)
++||.-..- +| +...+..+|.+|-.+ ..|.++..-||+...- -|++
T Consensus 52 GvHWiA~Aw-~P--------~s~~~YmFDPfG~sd-----~~L~qiY~F~Y~~llk---RSAL 97 (204)
T 4ekf_A 52 GVHWMAFAW-NP--------RSKTCYLFEPFGFSD-----QRLKQVYQFEYESLLR---RSAI 97 (204)
T ss_dssp CCCEEEEEE-ET--------TTTEEEEECTBTTCS-----HHHHHHHHHHHHHHHH---HHCC
T ss_pred ceeEEEeEe-cC--------CcceEEEeCCCCCCH-----HHHHHHhhhhHHHHHH---HHhh
Confidence 589977766 33 347899999999975 3577888889988765 5554
No 8
>2cxa_A Leucyl/phenylalanyl-tRNA-protein transferase; aminoacyl-tRNA, protein degradation, structural genomics, NPPSFA; HET: MSE; 1.60A {Escherichia coli} SCOP: d.108.1.6 PDB: 2dps_A 2dpt_A* 2z3o_A* 2z3k_A* 2z3l_A* 2z3m_A* 2z3n_A* 2z3p_A*
Probab=7.43 E-value=2e+02 Score=25.56 Aligned_cols=19 Identities=11% Similarity=-0.058 Sum_probs=15.4
Q ss_pred ccCCCCChHHHHHHHHHHH
Q 026234 101 RKKNKLDSGKFEHLLDNLW 119 (241)
Q Consensus 101 ~~~~wLND~IInFYl~~L~ 119 (241)
+++.|++++|++-|.++-.
T Consensus 124 ~~gTWI~~ei~~aY~~LH~ 142 (256)
T 2cxa_A 124 EEGTWITRGVVEAYHRLHE 142 (256)
T ss_dssp --CTTCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHh
Confidence 5789999999999999754
No 9
>1z8u_A Alpha-hemoglobin stabilizing protein; alpha haemoglobin, AHSP, oxidation, interaction, electron transport; HET: HEM; 2.40A {Homo sapiens} SCOP: a.7.11.1 PDB: 1y01_A* 1w0b_A 3ovu_A* 1w09_A 1w0a_A 3ia3_A* 1xzy_A
Probab=7.35 E-value=96 Score=23.83 Aligned_cols=14 Identities=0% Similarity=0.102 Sum_probs=10.4
Q ss_pred HHHHHHHHHHhhcC
Q 026234 110 KFEHLLDNLWRSFS 123 (241)
Q Consensus 110 IInFYl~~L~~~~~ 123 (241)
-+|||++|..+++.
T Consensus 44 WvnfYinyy~~~~~ 57 (102)
T 1z8u_A 44 WMNFYINYYRQQVT 57 (102)
T ss_dssp HHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHhc
Confidence 46899999866543
No 10
>1zvp_A Hypothetical protein VC0802; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 2.20A {Vibrio cholerae} SCOP: d.58.18.9 d.58.18.9
Probab=6.59 E-value=1.7e+02 Score=23.10 Aligned_cols=11 Identities=9% Similarity=0.196 Sum_probs=9.1
Q ss_pred cccceEEEecc
Q 026234 160 FSKKYVLVPIV 170 (241)
Q Consensus 160 FskdyIfVPIn 170 (241)
|.-||||||-.
T Consensus 108 y~tDhIlVp~~ 118 (133)
T 1zvp_A 108 YYHDHIFVQKE 118 (133)
T ss_dssp SSCEEEEEEGG
T ss_pred ccccEEEEehh
Confidence 67899999965
Done!