BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026235
(241 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O48721|HEM4_ARATH Uroporphyrinogen-III synthase, chloroplastic OS=Arabidopsis
thaliana GN=UROS PE=2 SV=2
Length = 321
Score = 272 bits (695), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 137/191 (71%), Positives = 159/191 (83%), Gaps = 1/191 (0%)
Query: 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS 110
P+VVVTRERGKN ++IKAL K+ I LELPLIQHA+GPD DRL+SVLN D FDWIIITS
Sbjct: 65 PQVVVTRERGKNNQIIKALEKNGISSLELPLIQHARGPDFDRLASVLN-DKSFDWIIITS 123
Query: 111 PEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASE 170
PEAGSVFLEAWK A +P V+IGVVGAGTA +FEE ++S+ L VAF+PSKATGK+LASE
Sbjct: 124 PEAGSVFLEAWKTASSPEVQIGVVGAGTARVFEEAMKSADGLLHVAFTPSKATGKVLASE 183
Query: 171 LPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIP 230
LP+ K+ +VLYPAS KA N+I EGLS RGFEVVRLNTYTT PV VD +L+QALS P
Sbjct: 184 LPEKVGKRSSVLYPASLKAGNDIVEGLSKRGFEVVRLNTYTTVPVQSVDTVLLQQALSAP 243
Query: 231 VVAVASPSAVR 241
V++VASPSAVR
Sbjct: 244 VLSVASPSAVR 254
>sp|Q10QR9|HEM4_ORYSJ Uroporphyrinogen-III synthase, chloroplastic OS=Oryza sativa subsp.
japonica GN=UROS PE=2 SV=1
Length = 302
Score = 266 bits (680), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 136/198 (68%), Positives = 152/198 (76%), Gaps = 1/198 (0%)
Query: 44 ASASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIF 103
A +S P VVVTRERGKN KLI AL KH + LELPLI+H +GPDTDRLS+VL D F
Sbjct: 40 ACSSPPPPDVVVTRERGKNAKLIAALEKHNVQSLELPLIKHVEGPDTDRLSAVLR-DEKF 98
Query: 104 DWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKAT 163
DWI ITSPEA +VFLE WK AG P VRI VVGAGT +F+EVIQ + SL+VAFSPSKA
Sbjct: 99 DWITITSPEAAAVFLEGWKAAGNPKVRIAVVGAGTERVFDEVIQYNDGSLEVAFSPSKAM 158
Query: 164 GKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVL 223
GK LASELP+ + C VLYPASAKA +EI+ GLSNRGFEV RLNTYTT V VD +L
Sbjct: 159 GKFLASELPRTTETTCKVLYPASAKAGHEIQNGLSNRGFEVTRLNTYTTVSVQDVDPLIL 218
Query: 224 KQALSIPVVAVASPSAVR 241
K ALS PVVAVASPSA+R
Sbjct: 219 KPALSAPVVAVASPSALR 236
>sp|Q59294|HEM4_CLOJO Porphyrin biosynthesis protein HemD OS=Clostridium josui GN=hemD
PE=3 SV=1
Length = 504
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 78/178 (43%), Gaps = 11/178 (6%)
Query: 52 KVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP 111
K++VTR + +G L++ L + + +E P I+ P ++L + WI++TS
Sbjct: 255 KILVTRPKESSGTLVEKLRQLGAEPVEYPCIEVVPIPQNEKLYHACENIREYGWILLTSK 314
Query: 112 EAGSVFLEAWKEAGTP-----NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKI 166
+F + G N +IG VG+ TA +EV L F+P G+
Sbjct: 315 NGIQIFFDYLNSKGLDARVLANTKIGTVGSQTAKALKEV------GLISDFTPEIFDGRH 368
Query: 167 LASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLK 224
LA + + + VL +A AS++I L + + R+ Y T ++ V K
Sbjct: 369 LALGIAERVGENEKVLICDAAIASDDIVNILRSNNIKFDRVPLYNTNYINENSNKVKK 426
>sp|Q9WUA3|K6PP_MOUSE 6-phosphofructokinase type C OS=Mus musculus GN=Pfkp PE=1 SV=1
Length = 784
Score = 32.0 bits (71), Expect = 3.6, Method: Composition-based stats.
Identities = 25/126 (19%), Positives = 59/126 (46%), Gaps = 15/126 (11%)
Query: 128 NVRIGVVG----AGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLY 183
+ R+ ++G GT S F+ ++ +S+ ++ + +AT + A + G + +
Sbjct: 298 DTRVTILGHVQRGGTPSAFDRIL-ASRMGVEAVIALLEATPETPACVVSLRGNQAVRLPL 356
Query: 184 PASAKASNEIEEGLSNRGF-EVVRL---------NTYTTEPVHHVDQTVLKQALSIPVVA 233
+ + ++++ + R F E V+L NTY + D+ ++K ++ V+
Sbjct: 357 MECVQMTQDVQKAMDERRFKEAVKLRGRRFEGNLNTYKRLAIKLPDEKIVKSNCNVAVIN 416
Query: 234 VASPSA 239
V +P+A
Sbjct: 417 VGAPAA 422
>sp|B5R6T2|PHNW_SALG2 2-aminoethylphosphonate--pyruvate transaminase OS=Salmonella
gallinarum (strain 287/91 / NCTC 13346) GN=phnW PE=3
SV=1
Length = 367
Score = 31.2 bits (69), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 11/98 (11%)
Query: 40 DATSASASNSNPKVVVTRERGKNGKLIK-----ALAKHRIDCLELPLIQHAQGPDTDRLS 94
+A SA KV++ ++++ +A H DC E+ PD +
Sbjct: 71 EAVLGSALGPQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGEVAR------PDVQAID 124
Query: 95 SVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIG 132
++LNAD I + E + L E GT R G
Sbjct: 125 AILNADPTISHIAMVHSETTTGMLNPIDEVGTLAHRYG 162
>sp|B5QTH9|PHNW_SALEP 2-aminoethylphosphonate--pyruvate transaminase OS=Salmonella
enteritidis PT4 (strain P125109) GN=phnW PE=3 SV=1
Length = 367
Score = 31.2 bits (69), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 11/98 (11%)
Query: 40 DATSASASNSNPKVVVTRERGKNGKLIK-----ALAKHRIDCLELPLIQHAQGPDTDRLS 94
+A SA KV++ ++++ +A H DC E+ PD +
Sbjct: 71 EAVLGSALGPQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGEVAR------PDVQAID 124
Query: 95 SVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIG 132
++LNAD I + E + L E GT R G
Sbjct: 125 AILNADPTISHIAMVHSETTTGMLNPIDEVGTLAHRYG 162
>sp|B5FKT6|PHNW_SALDC 2-aminoethylphosphonate--pyruvate transaminase OS=Salmonella dublin
(strain CT_02021853) GN=phnW PE=3 SV=1
Length = 367
Score = 31.2 bits (69), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 11/98 (11%)
Query: 40 DATSASASNSNPKVVVTRERGKNGKLIK-----ALAKHRIDCLELPLIQHAQGPDTDRLS 94
+A SA KV++ ++++ +A H DC E+ PD +
Sbjct: 71 EAVLGSALGPQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGEVAR------PDVQAID 124
Query: 95 SVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIG 132
++LNAD I + E + L E GT R G
Sbjct: 125 AILNADPTISHIAMVHSETTTGMLNPIDEVGTLAHRYG 162
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.128 0.357
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,728,823
Number of Sequences: 539616
Number of extensions: 3338038
Number of successful extensions: 7406
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 7400
Number of HSP's gapped (non-prelim): 11
length of query: 241
length of database: 191,569,459
effective HSP length: 114
effective length of query: 127
effective length of database: 130,053,235
effective search space: 16516760845
effective search space used: 16516760845
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)