Query 026235
Match_columns 241
No_of_seqs 189 out of 1415
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 05:24:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026235.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026235hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05752 uroporphyrinogen-III 100.0 1.2E-36 2.6E-41 265.5 20.2 188 48-241 1-195 (255)
2 PRK08811 uroporphyrinogen-III 100.0 3.1E-36 6.7E-41 264.8 19.7 192 42-241 10-203 (266)
3 COG1587 HemD Uroporphyrinogen- 100.0 2E-34 4.3E-39 250.8 19.5 183 50-241 1-188 (248)
4 PRK07239 bifunctional uroporph 100.0 5.8E-34 1.3E-38 261.7 20.7 191 44-241 5-214 (381)
5 PRK09189 uroporphyrinogen-III 100.0 1.1E-33 2.3E-38 244.6 18.6 180 51-241 1-183 (240)
6 PRK05928 hemD uroporphyrinogen 100.0 3.8E-32 8.2E-37 233.8 19.7 184 51-241 2-190 (249)
7 PRK06975 bifunctional uroporph 100.0 4.8E-32 1E-36 263.8 20.9 187 49-241 2-206 (656)
8 cd06578 HemD Uroporphyrinogen- 100.0 4.1E-30 8.9E-35 219.1 20.7 181 53-241 1-186 (239)
9 PF02602 HEM4: Uroporphyrinoge 100.0 3.8E-31 8.3E-36 226.2 12.3 171 63-241 1-181 (231)
10 PRK07168 bifunctional uroporph 99.9 2.4E-26 5.3E-31 216.1 13.6 168 45-241 246-420 (474)
11 KOG4132 Uroporphyrinogen III s 99.9 1.1E-24 2.4E-29 182.4 17.1 185 50-241 3-199 (260)
12 PRK05928 hemD uroporphyrinogen 99.7 3.9E-17 8.6E-22 140.3 14.2 120 48-174 123-247 (249)
13 cd06578 HemD Uroporphyrinogen- 99.7 4.9E-16 1.1E-20 132.2 15.0 118 47-171 119-239 (239)
14 PRK07239 bifunctional uroporph 99.7 7.1E-16 1.5E-20 141.9 15.1 122 45-174 137-275 (381)
15 PRK05752 uroporphyrinogen-III 99.7 2E-15 4.3E-20 131.8 14.2 121 48-175 128-251 (255)
16 PRK09189 uroporphyrinogen-III 99.6 1.1E-14 2.4E-19 125.8 14.4 119 48-173 116-239 (240)
17 PF02602 HEM4: Uroporphyrinoge 99.6 1.3E-15 2.7E-20 130.2 8.3 116 47-169 114-231 (231)
18 COG1587 HemD Uroporphyrinogen- 99.6 1.4E-14 3E-19 126.1 13.7 118 50-174 123-244 (248)
19 KOG4132 Uroporphyrinogen III s 99.5 8.8E-14 1.9E-18 117.1 13.1 123 47-175 130-255 (260)
20 PRK08811 uroporphyrinogen-III 99.5 1.3E-13 2.8E-18 121.4 14.5 121 48-175 136-260 (266)
21 PRK06975 bifunctional uroporph 99.3 4.7E-11 1E-15 117.1 13.7 118 48-174 137-265 (656)
22 PRK07168 bifunctional uroporph 98.3 4.9E-06 1.1E-10 79.0 9.9 85 51-155 369-457 (474)
23 PRK02261 methylaspartate mutas 95.9 0.44 9.6E-06 37.8 13.5 114 49-175 2-134 (137)
24 COG2185 Sbm Methylmalonyl-CoA 95.2 0.52 1.1E-05 37.8 11.4 110 49-171 11-133 (143)
25 TIGR02853 spore_dpaA dipicolin 95.2 0.41 9E-06 42.6 12.0 177 50-239 1-220 (287)
26 TIGR00640 acid_CoA_mut_C methy 94.7 1.6 3.5E-05 34.3 12.9 110 51-173 3-125 (132)
27 PRK08306 dipicolinate synthase 94.3 1.6 3.5E-05 39.0 13.7 173 50-238 2-220 (296)
28 COG1609 PurR Transcriptional r 94.2 0.44 9.6E-06 43.1 10.0 156 63-236 78-245 (333)
29 cd06298 PBP1_CcpA_like Ligand- 94.1 1.3 2.8E-05 37.5 12.2 151 64-237 20-186 (268)
30 cd06295 PBP1_CelR Ligand bindi 94.1 0.93 2E-05 38.7 11.4 153 65-238 32-196 (275)
31 cd06299 PBP1_LacI_like_13 Liga 93.9 1.1 2.5E-05 37.8 11.5 154 63-237 19-184 (265)
32 cd02072 Glm_B12_BD B12 binding 93.9 1.5 3.2E-05 34.5 11.1 97 62-172 16-127 (128)
33 TIGR01501 MthylAspMutase methy 93.8 2.6 5.6E-05 33.4 12.3 111 51-174 2-131 (134)
34 cd06273 PBP1_GntR_like_1 This 92.9 1.3 2.8E-05 37.5 10.4 153 63-238 19-188 (268)
35 PF00532 Peripla_BP_1: Peripla 92.8 0.31 6.7E-06 42.9 6.4 155 63-236 21-188 (279)
36 cd06271 PBP1_AglR_RafR_like Li 92.6 1.2 2.7E-05 37.5 9.7 155 63-237 23-190 (268)
37 cd01575 PBP1_GntR Ligand-bindi 92.5 1.5 3.2E-05 37.0 10.1 155 63-237 19-186 (268)
38 cd06272 PBP1_hexuronate_repres 92.0 1.6 3.5E-05 36.9 9.7 150 64-237 20-181 (261)
39 cd06297 PBP1_LacI_like_12 Liga 91.9 2.4 5.3E-05 36.2 10.8 153 63-237 19-189 (269)
40 cd06301 PBP1_rhizopine_binding 91.6 3.6 7.8E-05 34.9 11.5 119 64-201 20-153 (272)
41 cd06310 PBP1_ABC_sugar_binding 91.6 1.1 2.4E-05 38.1 8.3 158 63-238 19-193 (273)
42 cd06320 PBP1_allose_binding Pe 91.4 3.3 7.2E-05 35.3 11.1 125 63-206 19-158 (275)
43 cd02071 MM_CoA_mut_B12_BD meth 91.3 2.7 5.8E-05 32.3 9.4 97 63-172 17-121 (122)
44 cd06283 PBP1_RegR_EndR_KdgR_li 90.9 5.1 0.00011 33.7 11.7 121 63-204 19-150 (267)
45 TIGR01481 ccpA catabolite cont 90.8 5.6 0.00012 35.0 12.3 153 64-237 80-245 (329)
46 cd06288 PBP1_sucrose_transcrip 90.6 4.3 9.4E-05 34.2 11.0 153 64-238 21-187 (269)
47 PRK10014 DNA-binding transcrip 90.6 5.6 0.00012 35.2 12.1 151 65-236 86-251 (342)
48 cd06354 PBP1_BmpA_PnrA_like Pe 90.6 8.2 0.00018 33.1 12.8 157 63-237 22-192 (265)
49 PRK11790 D-3-phosphoglycerate 90.5 8.7 0.00019 36.0 13.7 172 46-239 6-214 (409)
50 cd06286 PBP1_CcpB_like Ligand- 90.5 4.2 9.1E-05 34.2 10.8 155 63-238 19-185 (260)
51 cd06294 PBP1_ycjW_transcriptio 90.4 3.4 7.3E-05 34.9 10.1 123 63-203 24-154 (270)
52 cd06305 PBP1_methylthioribose_ 90.3 3.2 7E-05 35.2 10.0 123 63-204 19-153 (273)
53 cd01537 PBP1_Repressors_Sugar_ 90.2 3.3 7.1E-05 34.4 9.8 120 63-201 19-148 (264)
54 PF04392 ABC_sub_bind: ABC tra 90.1 2.5 5.4E-05 37.3 9.3 164 62-237 17-193 (294)
55 cd06270 PBP1_GalS_like Ligand 90.0 6.6 0.00014 33.2 11.6 154 63-237 19-186 (268)
56 cd06292 PBP1_LacI_like_10 Liga 90.0 3.8 8.2E-05 34.8 10.2 155 63-236 19-189 (273)
57 cd01545 PBP1_SalR Ligand-bindi 90.0 4.2 9.1E-05 34.3 10.4 124 63-204 19-151 (270)
58 cd06281 PBP1_LacI_like_5 Ligan 89.9 5.4 0.00012 33.9 11.1 152 63-237 19-185 (269)
59 PRK10423 transcriptional repre 89.9 9.2 0.0002 33.5 12.9 155 63-237 76-244 (327)
60 cd00316 Oxidoreductase_nitroge 89.9 8.8 0.00019 35.1 13.1 153 50-213 152-314 (399)
61 cd06309 PBP1_YtfQ_like Peripla 89.8 2.8 6.2E-05 35.7 9.2 125 63-200 19-153 (273)
62 cd06284 PBP1_LacI_like_6 Ligan 89.7 11 0.00024 31.6 12.7 153 63-237 19-185 (267)
63 PRK15438 erythronate-4-phospha 89.5 2.2 4.7E-05 39.7 8.6 162 51-239 1-178 (378)
64 cd01536 PBP1_ABC_sugar_binding 89.5 5.8 0.00013 33.1 10.8 125 64-204 20-155 (267)
65 PRK10703 DNA-binding transcrip 89.4 6.1 0.00013 35.0 11.4 157 63-238 79-249 (341)
66 cd06285 PBP1_LacI_like_7 Ligan 89.4 8.8 0.00019 32.4 11.9 153 63-238 19-185 (265)
67 cd06289 PBP1_MalI_like Ligand- 89.2 11 0.00023 31.7 12.2 154 63-238 19-188 (268)
68 cd01542 PBP1_TreR_like Ligand- 89.2 5 0.00011 33.7 10.2 150 63-237 19-182 (259)
69 cd06275 PBP1_PurR Ligand-bindi 89.0 7.4 0.00016 32.8 11.2 154 64-237 20-187 (269)
70 cd06296 PBP1_CatR_like Ligand- 88.9 4.1 8.8E-05 34.5 9.5 157 63-238 19-188 (270)
71 cd06279 PBP1_LacI_like_3 Ligan 88.7 6.5 0.00014 33.8 10.8 125 63-211 24-173 (283)
72 cd06274 PBP1_FruR Ligand bindi 87.7 10 0.00023 31.9 11.3 153 64-237 20-187 (264)
73 PF03358 FMN_red: NADPH-depend 87.7 2.1 4.5E-05 33.7 6.4 71 63-134 21-112 (152)
74 PRK10569 NAD(P)H-dependent FMN 87.7 2.4 5.2E-05 35.4 7.0 69 64-132 22-103 (191)
75 PLN02928 oxidoreductase family 87.6 8.5 0.00018 35.2 11.2 61 176-239 157-237 (347)
76 cd02067 B12-binding B12 bindin 87.5 6.7 0.00015 29.6 9.0 83 62-156 16-106 (119)
77 cd06267 PBP1_LacI_sugar_bindin 87.2 16 0.00034 30.3 12.8 152 63-237 19-186 (264)
78 PRK11303 DNA-binding transcrip 87.1 17 0.00037 31.9 12.7 120 64-204 82-212 (328)
79 cd06278 PBP1_LacI_like_2 Ligan 86.9 6.6 0.00014 32.9 9.5 121 63-204 19-148 (266)
80 cd01541 PBP1_AraR Ligand-bindi 86.8 18 0.00038 30.7 12.3 154 63-237 19-192 (273)
81 cd06282 PBP1_GntR_like_2 Ligan 86.4 12 0.00026 31.4 10.9 152 64-238 20-186 (266)
82 cd06313 PBP1_ABC_sugar_binding 86.1 8.3 0.00018 33.0 9.9 125 63-201 19-153 (272)
83 cd06314 PBP1_tmGBP Periplasmic 85.9 6.1 0.00013 33.6 8.9 126 63-206 18-155 (271)
84 cd01574 PBP1_LacI Ligand-bindi 85.8 12 0.00026 31.4 10.6 123 63-205 19-150 (264)
85 cd06307 PBP1_uncharacterized_s 85.7 12 0.00026 31.8 10.7 160 64-237 20-195 (275)
86 cd06302 PBP1_LsrB_Quorum_Sensi 85.6 8.7 0.00019 33.5 9.9 123 63-202 19-154 (298)
87 COG4822 CbiK Cobalamin biosynt 85.6 16 0.00034 31.5 10.8 141 65-214 65-239 (265)
88 cd06290 PBP1_LacI_like_9 Ligan 85.3 12 0.00027 31.4 10.5 153 64-238 20-186 (265)
89 cd06318 PBP1_ABC_sugar_binding 85.3 22 0.00048 30.2 12.6 121 63-202 19-154 (282)
90 cd06293 PBP1_LacI_like_11 Liga 84.5 23 0.00051 29.8 11.9 153 63-237 19-186 (269)
91 cd06287 PBP1_LacI_like_8 Ligan 84.1 9.9 0.00021 32.7 9.4 119 63-205 27-152 (269)
92 cd06316 PBP1_ABC_sugar_binding 83.5 12 0.00027 32.3 9.8 123 65-201 21-156 (294)
93 PRK00257 erythronate-4-phospha 83.3 18 0.0004 33.6 11.2 162 51-239 1-178 (381)
94 PRK02910 light-independent pro 83.2 30 0.00064 33.5 13.1 142 60-212 175-328 (519)
95 TIGR02417 fruct_sucro_rep D-fr 83.1 21 0.00047 31.3 11.4 120 63-203 80-210 (327)
96 cd06291 PBP1_Qymf_like Ligand 82.8 19 0.00042 30.2 10.6 119 63-206 19-148 (265)
97 cd06300 PBP1_ABC_sugar_binding 82.7 23 0.0005 29.9 11.1 91 101-205 59-160 (272)
98 cd06323 PBP1_ribose_binding Pe 82.4 28 0.0006 29.1 12.1 124 64-205 20-156 (268)
99 PRK10537 voltage-gated potassi 82.1 18 0.00039 33.8 10.7 115 50-173 240-370 (393)
100 cd06319 PBP1_ABC_sugar_binding 82.0 30 0.00065 29.2 12.2 127 63-205 19-159 (277)
101 PRK14719 bifunctional RNAse/5- 81.8 17 0.00038 33.5 10.4 71 126-205 22-99 (360)
102 cd06308 PBP1_sensor_kinase_lik 81.8 21 0.00046 30.2 10.5 126 64-205 20-157 (270)
103 TIGR03567 FMN_reduc_SsuE FMN r 81.8 4.4 9.6E-05 32.9 6.0 70 65-134 22-104 (171)
104 PRK06756 flavodoxin; Provision 81.5 5.8 0.00013 31.2 6.4 64 63-136 20-91 (148)
105 PRK12480 D-lactate dehydrogena 80.7 44 0.00095 30.3 13.9 170 51-239 2-209 (330)
106 PRK00107 gidB 16S rRNA methylt 80.7 20 0.00043 29.8 9.6 54 162-215 122-175 (187)
107 PRK10727 DNA-binding transcrip 79.9 25 0.00055 31.1 10.7 151 64-236 80-245 (343)
108 cd06304 PBP1_BmpA_like Peripla 79.8 34 0.00075 28.9 11.2 130 64-210 22-158 (260)
109 PRK10653 D-ribose transporter 79.2 41 0.00089 29.1 13.9 124 63-204 46-181 (295)
110 PF13407 Peripla_BP_4: Peripla 79.2 9.6 0.00021 32.1 7.5 129 63-210 18-160 (257)
111 cd06277 PBP1_LacI_like_1 Ligan 79.2 36 0.00077 28.7 11.1 125 63-207 22-154 (268)
112 PRK10401 DNA-binding transcrip 79.2 36 0.00078 30.2 11.5 151 64-236 80-245 (346)
113 PRK09526 lacI lac repressor; R 78.9 21 0.00047 31.4 9.9 122 63-204 83-214 (342)
114 PF06180 CbiK: Cobalt chelatas 78.4 6.2 0.00013 34.8 6.1 142 63-206 61-238 (262)
115 PRK09496 trkA potassium transp 78.3 24 0.00052 32.8 10.5 119 46-172 227-363 (453)
116 cd02070 corrinoid_protein_B12- 78.3 38 0.00083 28.2 10.9 90 50-145 82-182 (201)
117 cd06167 LabA_like LabA_like pr 78.1 7.4 0.00016 30.4 6.0 83 61-145 53-142 (149)
118 cd01539 PBP1_GGBP Periplasmic 77.9 30 0.00065 30.2 10.5 65 63-137 19-91 (303)
119 cd01538 PBP1_ABC_xylose_bindin 77.9 30 0.00066 29.8 10.4 123 63-201 19-155 (288)
120 cd06306 PBP1_TorT-like TorT-li 77.7 18 0.00039 30.8 8.8 124 64-206 20-160 (268)
121 PRK14191 bifunctional 5,10-met 77.6 25 0.00054 31.4 9.7 159 53-236 36-208 (285)
122 PRK14192 bifunctional 5,10-met 77.6 18 0.0004 32.2 8.9 161 51-237 36-211 (283)
123 PRK07825 short chain dehydroge 77.5 44 0.00095 28.5 12.0 82 47-135 2-87 (273)
124 cd06321 PBP1_ABC_sugar_binding 77.3 43 0.00092 28.2 11.0 158 63-236 19-189 (271)
125 PRK06703 flavodoxin; Provision 76.2 7.6 0.00017 30.6 5.6 63 63-136 20-90 (151)
126 TIGR00288 conserved hypothetic 75.8 14 0.0003 30.2 7.0 76 63-145 69-148 (160)
127 TIGR01753 flav_short flavodoxi 75.8 8.3 0.00018 29.5 5.6 63 63-136 17-88 (140)
128 PF10087 DUF2325: Uncharacteri 75.7 12 0.00027 27.3 6.2 55 180-236 1-56 (97)
129 PF03358 FMN_red: NADPH-depend 75.6 3.5 7.6E-05 32.4 3.5 59 180-238 2-80 (152)
130 PRK13982 bifunctional SbtC-lik 75.6 10 0.00022 36.3 7.1 66 46-111 252-343 (475)
131 cd06312 PBP1_ABC_sugar_binding 75.3 16 0.00035 31.0 7.8 127 63-204 20-158 (271)
132 PRK09426 methylmalonyl-CoA mut 74.8 39 0.00084 34.2 11.2 100 62-174 599-706 (714)
133 TIGR01285 nifN nitrogenase mol 74.7 45 0.00097 31.4 11.2 143 60-210 181-343 (432)
134 cd06280 PBP1_LacI_like_4 Ligan 74.6 41 0.00088 28.3 10.1 151 63-236 19-180 (263)
135 COG2984 ABC-type uncharacteriz 74.6 59 0.0013 29.6 11.3 161 62-235 48-219 (322)
136 PF02310 B12-binding: B12 bind 74.6 14 0.0003 27.6 6.5 87 62-160 17-112 (121)
137 PF06506 PrpR_N: Propionate ca 74.5 18 0.0004 29.4 7.6 73 128-208 34-107 (176)
138 TIGR01282 nifD nitrogenase mol 73.5 28 0.00061 33.2 9.6 135 61-209 221-366 (466)
139 PRK09271 flavodoxin; Provision 73.5 45 0.00097 26.6 10.5 67 63-136 19-93 (160)
140 cd01976 Nitrogenase_MoFe_alpha 73.2 32 0.00069 32.3 9.7 137 61-210 186-332 (421)
141 PRK14175 bifunctional 5,10-met 73.2 34 0.00073 30.6 9.4 159 53-237 37-210 (286)
142 cd06276 PBP1_FucR_like Ligand- 72.8 27 0.00059 29.5 8.6 123 63-205 18-150 (247)
143 PRK01175 phosphoribosylformylg 72.8 37 0.0008 29.9 9.5 87 49-145 2-105 (261)
144 PRK06895 putative anthranilate 72.6 38 0.00083 27.8 9.2 88 51-156 2-94 (190)
145 PLN02516 methylenetetrahydrofo 72.5 63 0.0014 29.1 11.0 160 53-235 44-217 (299)
146 PRK15408 autoinducer 2-binding 72.3 16 0.00034 33.1 7.3 64 64-137 44-114 (336)
147 PRK14176 bifunctional 5,10-met 72.0 74 0.0016 28.5 11.4 158 51-234 41-213 (287)
148 cd01965 Nitrogenase_MoFe_beta_ 70.8 92 0.002 29.1 12.3 143 61-210 170-331 (428)
149 PF02606 LpxK: Tetraacyldisacc 70.7 12 0.00027 33.9 6.2 77 42-118 219-295 (326)
150 PF03709 OKR_DC_1_N: Orn/Lys/A 70.7 43 0.00092 25.3 8.4 68 62-138 6-77 (115)
151 PRK05569 flavodoxin; Provision 70.4 8.7 0.00019 29.8 4.6 36 100-135 46-90 (141)
152 cd06320 PBP1_allose_binding Pe 70.2 27 0.00059 29.5 8.0 87 51-137 123-218 (275)
153 PRK08410 2-hydroxyacid dehydro 69.8 83 0.0018 28.2 12.9 63 177-239 144-207 (311)
154 cd01080 NAD_bind_m-THF_DH_Cycl 69.6 26 0.00056 28.7 7.3 69 162-238 26-97 (168)
155 PRK14189 bifunctional 5,10-met 69.5 60 0.0013 29.0 10.1 159 53-237 37-210 (285)
156 COG2185 Sbm Methylmalonyl-CoA 69.1 30 0.00065 27.8 7.3 72 137-217 31-107 (143)
157 PF00072 Response_reg: Respons 69.0 39 0.00085 24.1 8.7 93 61-171 10-111 (112)
158 PRK06934 flavodoxin; Provision 68.9 2.4 5.3E-05 36.4 1.2 71 61-134 72-165 (221)
159 TIGR01283 nifE nitrogenase mol 68.7 38 0.00082 32.0 9.3 140 61-210 211-358 (456)
160 cd06341 PBP1_ABC_ligand_bindin 68.7 56 0.0012 28.8 10.0 124 101-238 66-198 (341)
161 PLN02616 tetrahydrofolate dehy 68.6 43 0.00094 31.0 9.2 66 162-235 213-281 (364)
162 PRK12742 oxidoreductase; Provi 68.2 39 0.00084 27.9 8.4 32 47-78 3-35 (237)
163 PRK02842 light-independent pro 68.1 79 0.0017 29.6 11.2 147 50-209 166-322 (427)
164 cd06289 PBP1_MalI_like Ligand- 68.0 48 0.001 27.6 9.1 89 50-138 117-217 (268)
165 PF10087 DUF2325: Uncharacteri 67.8 45 0.00097 24.3 9.4 55 52-111 1-57 (97)
166 PRK07765 para-aminobenzoate sy 67.7 73 0.0016 26.9 10.0 93 51-156 1-98 (214)
167 PF04127 DFP: DNA / pantothena 67.7 13 0.00027 31.0 5.2 32 48-79 1-49 (185)
168 PRK14179 bifunctional 5,10-met 67.3 93 0.002 27.8 11.9 160 52-237 36-210 (284)
169 TIGR01861 ANFD nitrogenase iro 67.1 47 0.001 32.2 9.7 139 60-209 215-360 (513)
170 TIGR01327 PGDH D-3-phosphoglyc 67.1 76 0.0016 30.7 11.1 165 52-239 1-204 (525)
171 PRK07308 flavodoxin; Validated 67.0 18 0.00039 28.3 5.8 74 52-136 5-90 (146)
172 cd01544 PBP1_GalR Ligand-bindi 67.0 55 0.0012 27.7 9.3 150 63-240 24-191 (270)
173 PF00389 2-Hacid_dh: D-isomer 66.9 45 0.00097 25.5 7.9 95 53-171 1-101 (133)
174 PF13458 Peripla_BP_6: Peripla 66.6 84 0.0018 27.4 10.7 130 93-237 61-199 (343)
175 PRK05579 bifunctional phosphop 66.3 33 0.00073 32.1 8.2 34 46-79 184-234 (399)
176 PRK06849 hypothetical protein; 66.1 47 0.001 30.5 9.1 90 49-141 3-113 (389)
177 TIGR01284 alt_nitrog_alph nitr 65.8 68 0.0015 30.5 10.4 131 62-210 214-358 (457)
178 COG0075 Serine-pyruvate aminot 65.7 17 0.00037 33.9 6.1 82 26-109 57-138 (383)
179 PRK00170 azoreductase; Reviewe 65.7 10 0.00023 31.1 4.4 16 223-238 81-96 (201)
180 PRK13243 glyoxylate reductase; 65.6 1.1E+02 0.0023 27.8 11.5 165 51-239 3-215 (333)
181 cd05565 PTS_IIB_lactose PTS_II 65.6 33 0.00071 25.6 6.6 26 180-205 2-32 (99)
182 KOG2882 p-Nitrophenyl phosphat 65.5 38 0.00082 30.6 7.9 74 104-205 55-129 (306)
183 TIGR02690 resist_ArsH arsenica 65.3 54 0.0012 28.1 8.7 86 50-136 26-136 (219)
184 COG1909 Uncharacterized protei 65.3 15 0.00033 30.0 5.0 71 131-210 38-136 (167)
185 cd01968 Nitrogenase_NifE_I Nit 65.1 66 0.0014 29.9 10.0 141 60-210 171-319 (410)
186 cd05564 PTS_IIB_chitobiose_lic 64.8 53 0.0011 24.0 9.2 74 53-137 2-80 (96)
187 cd01391 Periplasmic_Binding_Pr 64.8 45 0.00097 27.0 8.1 35 102-136 182-218 (269)
188 TIGR03567 FMN_reduc_SsuE FMN r 64.1 17 0.00038 29.4 5.3 18 221-238 58-75 (171)
189 TIGR01278 DPOR_BchB light-inde 64.0 1.3E+02 0.0028 29.0 12.0 133 61-211 176-329 (511)
190 PRK12779 putative bifunctional 64.0 1.7E+02 0.0036 30.7 13.5 33 47-79 303-335 (944)
191 TIGR00853 pts-lac PTS system, 63.9 55 0.0012 24.0 9.8 76 50-137 3-84 (95)
192 cd01080 NAD_bind_m-THF_DH_Cycl 63.9 26 0.00057 28.6 6.3 58 46-113 40-98 (168)
193 PRK08605 D-lactate dehydrogena 63.8 1.1E+02 0.0024 27.7 10.9 131 99-239 42-211 (332)
194 PRK08339 short chain dehydroge 63.8 57 0.0012 27.9 8.8 85 47-135 5-94 (263)
195 cd06309 PBP1_YtfQ_like Peripla 63.8 88 0.0019 26.3 10.0 47 93-139 175-225 (273)
196 PRK10569 NAD(P)H-dependent FMN 63.8 20 0.00044 29.8 5.7 47 192-238 22-76 (191)
197 PRK09739 hypothetical protein; 63.7 20 0.00044 29.7 5.8 47 192-238 25-89 (199)
198 PRK01355 azoreductase; Reviewe 63.4 20 0.00044 29.8 5.7 46 193-238 26-87 (199)
199 PF05991 NYN_YacP: YacP-like N 63.4 18 0.00038 29.5 5.2 53 152-207 67-120 (166)
200 cd01391 Periplasmic_Binding_Pr 63.4 78 0.0017 25.5 12.1 124 101-237 57-191 (269)
201 TIGR00521 coaBC_dfp phosphopan 63.4 35 0.00076 31.8 7.7 34 46-79 181-231 (390)
202 cd01537 PBP1_Repressors_Sugar_ 63.3 35 0.00077 28.0 7.2 46 93-138 169-217 (264)
203 TIGR03566 FMN_reduc_MsuE FMN r 63.2 21 0.00045 28.9 5.6 64 71-134 29-107 (174)
204 PRK06841 short chain dehydroge 63.0 50 0.0011 27.7 8.2 38 41-78 6-44 (255)
205 PRK04017 hypothetical protein; 62.9 43 0.00093 26.5 7.0 83 115-206 10-98 (132)
206 PRK06550 fabG 3-ketoacyl-(acyl 62.9 54 0.0012 27.1 8.3 65 47-111 2-76 (235)
207 PRK07206 hypothetical protein; 62.9 1.1E+02 0.0023 28.2 10.9 66 51-117 3-85 (416)
208 TIGR03675 arCOG00543 arCOG0054 62.2 1.3E+02 0.0028 30.0 11.8 98 103-203 494-617 (630)
209 PRK08250 glutamine amidotransf 62.2 48 0.001 28.4 8.0 52 51-111 1-54 (235)
210 PRK10310 PTS system galactitol 62.1 36 0.00078 24.9 6.2 26 179-204 3-34 (94)
211 PLN02253 xanthoxin dehydrogena 62.0 54 0.0012 28.1 8.4 34 46-79 14-48 (280)
212 PRK06490 glutamine amidotransf 61.9 65 0.0014 27.8 8.7 94 49-157 6-109 (239)
213 smart00852 MoCF_biosynth Proba 61.8 13 0.00029 28.7 4.1 49 61-113 19-68 (135)
214 PRK14178 bifunctional 5,10-met 61.4 1E+02 0.0022 27.5 9.9 159 53-237 31-204 (279)
215 PRK03094 hypothetical protein; 61.4 15 0.00033 26.5 3.9 36 188-236 8-43 (80)
216 PRK06932 glycerate dehydrogena 61.4 50 0.0011 29.7 8.2 60 177-239 146-208 (314)
217 PF03853 YjeF_N: YjeF-related 61.2 18 0.00039 29.4 4.9 45 166-210 11-61 (169)
218 PRK14476 nitrogenase molybdenu 61.0 51 0.0011 31.3 8.6 144 60-211 182-344 (455)
219 PRK14188 bifunctional 5,10-met 60.9 1E+02 0.0022 27.7 9.9 137 53-207 37-188 (296)
220 COG1497 Predicted transcriptio 60.8 23 0.0005 31.0 5.5 63 130-204 190-252 (260)
221 PF11798 IMS_HHH: IMS family H 60.8 4.8 0.0001 23.6 1.0 17 129-145 14-30 (32)
222 cd02068 radical_SAM_B12_BD B12 60.5 72 0.0016 24.1 8.6 76 62-144 5-84 (127)
223 PRK10669 putative cation:proto 60.0 1.1E+02 0.0023 29.8 10.8 115 51-173 418-549 (558)
224 cd01966 Nitrogenase_NifN_1 Nit 59.9 71 0.0015 29.9 9.2 143 61-210 172-332 (417)
225 PRK05568 flavodoxin; Provision 59.8 21 0.00046 27.5 4.9 36 100-136 46-90 (142)
226 PRK11303 DNA-binding transcrip 59.7 71 0.0015 27.9 8.8 85 50-137 179-276 (328)
227 cd01972 Nitrogenase_VnfE_like 59.7 86 0.0019 29.3 9.8 138 61-209 180-325 (426)
228 cd06310 PBP1_ABC_sugar_binding 59.6 58 0.0013 27.4 8.1 85 51-137 124-219 (273)
229 cd06303 PBP1_LuxPQ_Quorum_Sens 59.6 1.1E+02 0.0024 26.0 10.0 162 63-236 20-198 (280)
230 COG4635 HemG Flavodoxin [Energ 59.5 25 0.00053 28.9 5.2 64 62-136 18-89 (175)
231 PLN03139 formate dehydrogenase 59.5 86 0.0019 29.2 9.6 157 62-239 64-266 (386)
232 PF04016 DUF364: Domain of unk 59.5 4.5 9.8E-05 32.3 1.0 115 48-174 9-131 (147)
233 cd01967 Nitrogenase_MoFe_alpha 59.4 1E+02 0.0023 28.3 10.2 139 61-210 174-318 (406)
234 PLN02897 tetrahydrofolate dehy 59.3 78 0.0017 29.1 9.0 47 162-208 196-245 (345)
235 PRK05784 phosphoribosylamine-- 59.3 1.4E+02 0.003 28.7 11.2 74 51-125 1-93 (486)
236 cd01977 Nitrogenase_VFe_alpha 59.2 1.5E+02 0.0033 27.5 11.4 139 61-210 176-321 (415)
237 cd06325 PBP1_ABC_uncharacteriz 59.1 1.1E+02 0.0023 25.7 11.4 127 101-237 59-193 (281)
238 PRK09701 D-allose transporter 58.9 43 0.00093 29.4 7.3 130 63-204 44-190 (311)
239 PRK10339 DNA-binding transcrip 58.8 1.3E+02 0.0027 26.4 10.3 145 63-236 87-242 (327)
240 PRK13556 azoreductase; Provisi 58.8 33 0.00071 28.6 6.2 15 224-238 85-99 (208)
241 PRK06487 glycerate dehydrogena 58.8 1.3E+02 0.0029 26.9 10.5 172 51-239 1-208 (317)
242 cd01741 GATase1_1 Subgroup of 58.4 72 0.0016 25.9 8.1 53 54-113 5-57 (188)
243 cd01980 Chlide_reductase_Y Chl 58.3 1.6E+02 0.0035 27.5 11.5 144 51-209 160-311 (416)
244 cd06322 PBP1_ABC_sugar_binding 58.3 1.1E+02 0.0024 25.5 13.3 154 63-236 19-187 (267)
245 PRK06398 aldose dehydrogenase; 58.2 65 0.0014 27.3 8.1 64 47-110 3-80 (258)
246 PLN02409 serine--glyoxylate am 58.1 1E+02 0.0022 28.4 9.9 72 165-238 71-147 (401)
247 TIGR01459 HAD-SF-IIA-hyp4 HAD- 58.0 1E+02 0.0023 26.1 9.4 85 57-145 24-114 (242)
248 PRK13581 D-3-phosphoglycerate 58.0 1.5E+02 0.0033 28.7 11.4 166 51-239 1-205 (526)
249 TIGR02955 TMAO_TorT TMAO reduc 57.8 61 0.0013 28.1 8.0 127 64-206 20-160 (295)
250 KOG2862 Alanine-glyoxylate ami 57.7 56 0.0012 29.9 7.6 137 48-201 15-166 (385)
251 cd03129 GAT1_Peptidase_E_like 57.6 53 0.0012 27.4 7.3 67 50-123 29-100 (210)
252 PLN02306 hydroxypyruvate reduc 57.6 1.6E+02 0.0035 27.3 13.6 146 50-210 15-198 (386)
253 PRK14190 bifunctional 5,10-met 57.5 1.3E+02 0.0028 26.9 9.9 159 53-236 37-209 (284)
254 cd01740 GATase1_FGAR_AT Type 1 57.4 44 0.00096 28.7 6.9 79 57-145 7-98 (238)
255 cd03129 GAT1_Peptidase_E_like 57.4 61 0.0013 27.0 7.7 71 165-239 15-91 (210)
256 PRK07060 short chain dehydroge 57.3 78 0.0017 26.2 8.4 33 46-78 5-38 (245)
257 COG0556 UvrB Helicase subunit 57.0 25 0.00054 34.4 5.6 73 157-233 425-501 (663)
258 TIGR01860 VNFD nitrogenase van 56.9 1E+02 0.0022 29.3 9.9 139 61-210 215-360 (461)
259 PRK10792 bifunctional 5,10-met 56.9 1.1E+02 0.0024 27.3 9.5 158 53-236 38-210 (285)
260 PRK06395 phosphoribosylamine-- 56.7 1.7E+02 0.0037 27.5 11.3 60 51-111 3-74 (435)
261 cd06282 PBP1_GntR_like_2 Ligan 56.7 31 0.00068 28.7 5.9 71 65-137 139-214 (266)
262 PRK06079 enoyl-(acyl carrier p 56.5 61 0.0013 27.4 7.7 69 47-123 4-79 (252)
263 PF02670 DXP_reductoisom: 1-de 56.2 11 0.00024 29.6 2.7 87 133-237 9-99 (129)
264 cd00615 Orn_deC_like Ornithine 55.8 41 0.00088 29.5 6.6 63 48-112 97-164 (294)
265 TIGR02667 moaB_proteo molybden 55.8 46 0.001 26.9 6.4 50 61-114 23-75 (163)
266 cd08187 BDH Butanol dehydrogen 55.7 42 0.00091 30.9 6.9 66 162-233 15-91 (382)
267 PRK15409 bifunctional glyoxyla 55.6 1.6E+02 0.0035 26.6 13.6 165 51-239 3-211 (323)
268 cd01743 GATase1_Anthranilate_S 55.4 84 0.0018 25.5 8.0 89 54-158 3-95 (184)
269 PF02579 Nitro_FeMo-Co: Dinitr 55.4 22 0.00048 25.2 4.1 37 129-172 57-93 (94)
270 PRK09739 hypothetical protein; 55.3 33 0.00072 28.4 5.6 60 63-122 24-106 (199)
271 TIGR00853 pts-lac PTS system, 55.0 60 0.0013 23.8 6.4 27 178-204 3-34 (95)
272 PRK05565 fabG 3-ketoacyl-(acyl 55.0 68 0.0015 26.5 7.6 33 47-79 2-35 (247)
273 COG1663 LpxK Tetraacyldisaccha 55.0 24 0.00051 32.3 4.9 77 40-117 223-299 (336)
274 PRK03619 phosphoribosylformylg 54.7 87 0.0019 26.5 8.2 79 52-145 2-95 (219)
275 cd06341 PBP1_ABC_ligand_bindin 54.7 60 0.0013 28.6 7.6 69 62-133 150-220 (341)
276 cd08551 Fe-ADH iron-containing 54.5 35 0.00077 31.1 6.2 66 163-233 10-85 (370)
277 smart00852 MoCF_biosynth Proba 54.5 20 0.00044 27.6 4.0 49 187-240 17-69 (135)
278 CHL00073 chlN photochlorophyll 54.4 1.1E+02 0.0024 29.3 9.5 141 52-209 195-345 (457)
279 PF13377 Peripla_BP_3: Peripla 54.3 60 0.0013 24.9 6.7 74 63-137 29-106 (160)
280 PRK01160 hypothetical protein; 54.3 40 0.00087 28.0 5.8 106 91-211 9-145 (178)
281 TIGR03566 FMN_reduc_MsuE FMN r 54.1 26 0.00057 28.3 4.7 18 221-238 61-78 (174)
282 PRK11480 tauA taurine transpor 54.0 44 0.00095 29.7 6.6 66 44-114 116-181 (320)
283 PRK13143 hisH imidazole glycer 53.9 98 0.0021 25.7 8.3 78 51-144 1-86 (200)
284 cd06311 PBP1_ABC_sugar_binding 53.9 1.3E+02 0.0029 25.2 12.1 92 101-205 59-160 (274)
285 cd06308 PBP1_sensor_kinase_lik 53.7 41 0.00088 28.4 6.1 87 50-136 122-217 (270)
286 TIGR01729 taurine_ABC_bnd taur 53.5 48 0.001 28.9 6.7 65 44-113 94-158 (300)
287 cd06451 AGAT_like Alanine-glyo 53.5 1.5E+02 0.0033 26.2 10.1 73 164-238 60-134 (356)
288 TIGR00537 hemK_rel_arch HemK-r 53.3 36 0.00078 27.4 5.4 49 165-213 120-169 (179)
289 PRK07856 short chain dehydroge 53.2 83 0.0018 26.4 7.9 34 46-79 2-36 (252)
290 PF00266 Aminotran_5: Aminotra 53.2 56 0.0012 29.4 7.2 61 176-238 86-149 (371)
291 COG0569 TrkA K+ transport syst 53.2 1.4E+02 0.0031 25.3 11.3 155 51-213 1-186 (225)
292 cd06288 PBP1_sucrose_transcrip 53.2 1E+02 0.0023 25.6 8.5 73 65-137 138-215 (269)
293 PF13344 Hydrolase_6: Haloacid 53.0 20 0.00044 26.5 3.6 46 152-203 55-101 (101)
294 COG0623 FabI Enoyl-[acyl-carri 52.7 1.1E+02 0.0023 26.9 8.3 158 46-208 2-187 (259)
295 PRK12827 short chain dehydroge 52.6 86 0.0019 25.9 7.9 32 48-79 4-36 (249)
296 COG0826 Collagenase and relate 52.6 1.4E+02 0.003 27.4 9.6 105 62-174 51-159 (347)
297 cd06300 PBP1_ABC_sugar_binding 52.4 1.2E+02 0.0027 25.3 8.9 44 93-137 176-219 (272)
298 COG0436 Aspartate/tyrosine/aro 52.3 1.3E+02 0.0029 27.8 9.7 77 160-238 95-173 (393)
299 cd00886 MogA_MoaB MogA_MoaB fa 52.3 15 0.00032 29.3 2.9 49 62-114 22-73 (152)
300 PF03698 UPF0180: Uncharacteri 52.2 25 0.00054 25.3 3.7 36 188-236 8-43 (80)
301 PRK14478 nitrogenase molybdenu 52.2 1.5E+02 0.0033 28.3 10.2 139 61-211 205-357 (475)
302 cd06273 PBP1_GntR_like_1 This 52.2 52 0.0011 27.5 6.5 74 63-136 137-215 (268)
303 TIGR02931 anfK_nitrog Fe-only 51.9 1.8E+02 0.0038 27.7 10.6 144 61-210 183-344 (461)
304 COG0655 WrbA Multimeric flavod 51.8 28 0.0006 29.1 4.6 20 219-238 66-85 (207)
305 PF02525 Flavodoxin_2: Flavodo 51.7 6.3 0.00014 32.6 0.7 47 191-238 22-88 (199)
306 PF04273 DUF442: Putative phos 51.6 33 0.00073 26.0 4.6 69 51-119 29-104 (110)
307 COG0715 TauA ABC-type nitrate/ 51.6 42 0.00091 29.6 6.0 64 45-113 131-195 (335)
308 cd08185 Fe-ADH1 Iron-containin 51.4 62 0.0013 29.7 7.3 66 162-233 12-88 (380)
309 PRK06125 short chain dehydroge 51.3 1.2E+02 0.0025 25.6 8.6 32 47-78 4-36 (259)
310 PRK12748 3-ketoacyl-(acyl-carr 51.3 83 0.0018 26.5 7.6 33 47-79 2-37 (256)
311 PRK09496 trkA potassium transp 51.3 1.2E+02 0.0027 28.0 9.4 113 51-172 1-137 (453)
312 PF02882 THF_DHG_CYH_C: Tetrah 51.0 61 0.0013 26.3 6.3 68 162-237 18-88 (160)
313 TIGR00177 molyb_syn molybdenum 51.0 19 0.00041 28.4 3.3 50 61-114 28-78 (144)
314 TIGR01729 taurine_ABC_bnd taur 50.9 76 0.0016 27.7 7.5 56 177-237 99-156 (300)
315 PRK14186 bifunctional 5,10-met 50.7 1.2E+02 0.0026 27.2 8.8 138 53-208 37-189 (297)
316 TIGR03427 ABC_peri_uca ABC tra 50.7 25 0.00054 31.9 4.5 69 42-115 98-166 (328)
317 cd01575 PBP1_GntR Ligand-bindi 50.6 1.1E+02 0.0024 25.4 8.3 45 93-137 168-215 (268)
318 PRK14171 bifunctional 5,10-met 50.2 1.4E+02 0.003 26.8 9.0 160 51-235 35-209 (288)
319 PRK06463 fabG 3-ketoacyl-(acyl 50.1 1.1E+02 0.0024 25.6 8.3 32 47-78 4-36 (255)
320 cd06314 PBP1_tmGBP Periplasmic 50.0 68 0.0015 27.1 6.9 70 65-138 142-216 (271)
321 PF02882 THF_DHG_CYH_C: Tetrah 49.9 44 0.00095 27.2 5.3 55 47-111 33-88 (160)
322 KOG0519 Sensory transduction h 49.9 1.5E+02 0.0032 30.4 10.2 119 41-174 657-783 (786)
323 PRK08594 enoyl-(acyl carrier p 49.8 1.6E+02 0.0035 25.0 9.8 85 47-135 4-96 (257)
324 COG0431 Predicted flavoprotein 49.7 55 0.0012 26.9 6.0 40 91-130 56-102 (184)
325 cd06323 PBP1_ribose_binding Pe 49.6 54 0.0012 27.3 6.2 37 101-137 180-216 (268)
326 PRK14183 bifunctional 5,10-met 49.6 1.9E+02 0.0042 25.8 10.0 158 53-236 36-208 (281)
327 PRK07114 keto-hydroxyglutarate 49.6 1.7E+02 0.0037 25.1 9.4 23 181-204 113-135 (222)
328 TIGR03427 ABC_peri_uca ABC tra 49.2 2E+02 0.0044 25.9 11.0 137 64-238 25-163 (328)
329 cd06313 PBP1_ABC_sugar_binding 49.2 1.3E+02 0.0028 25.6 8.5 47 92-138 173-219 (272)
330 PRK05234 mgsA methylglyoxal sy 49.2 58 0.0013 25.9 5.8 41 66-110 42-83 (142)
331 PRK05872 short chain dehydroge 49.0 1.8E+02 0.0039 25.3 10.2 83 46-135 5-94 (296)
332 cd03145 GAT1_cyanophycinase Ty 49.0 51 0.0011 27.9 5.9 67 49-118 28-99 (217)
333 cd01974 Nitrogenase_MoFe_beta 48.9 1.7E+02 0.0036 27.5 9.8 140 62-210 176-335 (435)
334 COG0521 MoaB Molybdopterin bio 48.9 37 0.0008 28.0 4.7 51 187-240 26-79 (169)
335 PRK07053 glutamine amidotransf 48.7 1.2E+02 0.0025 26.1 8.1 51 51-110 3-55 (234)
336 PLN02409 serine--glyoxylate am 48.4 55 0.0012 30.1 6.5 63 48-111 82-146 (401)
337 TIGR01452 PGP_euk phosphoglyco 48.4 44 0.00095 29.2 5.6 48 152-204 59-107 (279)
338 PRK10653 D-ribose transporter 48.4 1.1E+02 0.0024 26.3 8.1 35 102-136 207-241 (295)
339 PF02571 CbiJ: Precorrin-6x re 48.3 1.6E+02 0.0034 25.7 8.9 127 51-195 1-147 (249)
340 PRK11480 tauA taurine transpor 48.2 58 0.0013 28.9 6.4 57 177-238 121-179 (320)
341 PLN02891 IMP cyclohydrolase 48.2 46 0.001 32.4 5.9 91 105-208 26-118 (547)
342 PRK12744 short chain dehydroge 48.2 1.5E+02 0.0032 24.9 8.7 35 45-79 3-38 (257)
343 TIGR03590 PseG pseudaminic aci 48.1 90 0.002 27.3 7.5 70 50-123 31-101 (279)
344 CHL00076 chlB photochlorophyll 48.1 2.7E+02 0.0057 27.0 14.1 140 60-210 180-338 (513)
345 PF00148 Oxidored_nitro: Nitro 48.0 8.2 0.00018 35.5 0.9 153 50-214 144-307 (398)
346 PRK11921 metallo-beta-lactamas 47.9 34 0.00074 31.6 5.0 37 100-136 298-341 (394)
347 cd08193 HVD 5-hydroxyvalerate 47.9 70 0.0015 29.3 7.0 67 162-233 12-88 (376)
348 KOG2836 Protein tyrosine phosp 47.6 40 0.00086 27.0 4.5 83 23-123 3-90 (173)
349 cd01543 PBP1_XylR Ligand-bindi 47.5 1.7E+02 0.0036 24.5 9.7 88 50-137 109-209 (265)
350 PRK07792 fabG 3-ketoacyl-(acyl 47.5 1.7E+02 0.0037 25.6 9.3 90 43-135 5-98 (306)
351 PRK06113 7-alpha-hydroxysteroi 47.3 1.2E+02 0.0027 25.4 8.1 32 47-78 8-40 (255)
352 TIGR02990 ectoine_eutA ectoine 47.3 1.1E+02 0.0023 26.6 7.7 47 161-209 105-153 (239)
353 PF12261 T_hemolysin: Thermost 47.1 22 0.00048 29.5 3.2 72 64-142 69-150 (179)
354 PLN02695 GDP-D-mannose-3',5'-e 47.1 1.1E+02 0.0023 27.9 8.1 41 39-79 10-51 (370)
355 cd01079 NAD_bind_m-THF_DH NAD 46.9 1.4E+02 0.0031 25.2 8.1 46 162-207 35-92 (197)
356 PRK13394 3-hydroxybutyrate deh 46.8 1E+02 0.0022 25.7 7.5 31 48-78 5-36 (262)
357 PRK11041 DNA-binding transcrip 46.7 1.9E+02 0.004 24.8 11.5 154 63-236 55-221 (309)
358 TIGR01140 L_thr_O3P_dcar L-thr 46.7 1.5E+02 0.0033 26.3 8.9 87 135-239 49-136 (330)
359 TIGR01737 FGAM_synth_I phospho 46.5 1.1E+02 0.0023 26.1 7.5 80 51-145 1-94 (227)
360 TIGR01501 MthylAspMutase methy 46.4 56 0.0012 25.8 5.3 56 139-203 22-82 (134)
361 cd00758 MoCF_BD MoCF_BD: molyb 46.2 24 0.00052 27.3 3.2 49 62-114 21-70 (133)
362 COG1433 Uncharacterized conser 46.2 58 0.0013 25.3 5.3 50 118-174 58-107 (121)
363 PLN02461 Probable pyruvate kin 46.1 94 0.002 30.2 7.7 73 104-186 398-498 (511)
364 cd06295 PBP1_CelR Ligand bindi 46.1 93 0.002 26.2 7.2 89 50-138 125-225 (275)
365 PRK05670 anthranilate synthase 45.9 1.6E+02 0.0036 23.9 10.1 83 58-156 8-94 (189)
366 cd06274 PBP1_FruR Ligand bindi 45.8 1.1E+02 0.0025 25.4 7.6 89 50-138 116-217 (264)
367 cd06272 PBP1_hexuronate_repres 45.5 68 0.0015 26.8 6.2 50 93-142 163-215 (261)
368 cd06301 PBP1_rhizopine_binding 45.5 65 0.0014 27.1 6.1 44 93-136 174-219 (272)
369 PRK14180 bifunctional 5,10-met 45.5 1.8E+02 0.004 25.9 9.0 147 65-236 52-209 (282)
370 cd06316 PBP1_ABC_sugar_binding 45.5 1.3E+02 0.0028 25.8 8.1 47 92-138 176-222 (294)
371 COG0745 OmpR Response regulato 45.5 1.9E+02 0.0042 24.6 9.7 110 51-174 1-115 (229)
372 cd02071 MM_CoA_mut_B12_BD meth 45.3 65 0.0014 24.5 5.5 79 48-126 25-103 (122)
373 COG1066 Sms Predicted ATP-depe 45.3 34 0.00074 32.4 4.4 71 165-240 108-180 (456)
374 COG3340 PepE Peptidase E [Amin 45.1 64 0.0014 27.8 5.7 83 27-126 18-107 (224)
375 PRK08264 short chain dehydroge 45.0 1.7E+02 0.0037 24.1 8.5 31 47-77 3-35 (238)
376 PF11731 Cdd1: Pathogenicity l 45.0 19 0.0004 26.8 2.2 39 130-174 16-54 (93)
377 cd08178 AAD_C C-terminal alcoh 45.0 32 0.00069 31.9 4.3 53 178-233 21-83 (398)
378 PRK06196 oxidoreductase; Provi 44.9 2.1E+02 0.0046 25.0 9.5 82 47-135 23-108 (315)
379 PRK08063 enoyl-(acyl carrier p 44.7 1.3E+02 0.0028 25.0 7.7 31 48-78 2-33 (250)
380 cd06294 PBP1_ycjW_transcriptio 44.6 90 0.0019 26.0 6.8 45 93-137 174-221 (270)
381 cd01979 Pchlide_reductase_N Pc 44.6 2.6E+02 0.0056 25.8 10.7 144 51-209 156-307 (396)
382 cd08170 GlyDH Glycerol dehydro 44.5 45 0.00098 30.2 5.2 68 162-233 9-82 (351)
383 cd06284 PBP1_LacI_like_6 Ligan 44.5 96 0.0021 25.7 6.9 74 64-137 136-214 (267)
384 PRK06171 sorbitol-6-phosphate 44.5 1.3E+02 0.0028 25.4 7.8 33 47-79 6-39 (266)
385 cd06326 PBP1_STKc_like Type I 44.4 2.1E+02 0.0046 24.8 9.7 133 92-236 58-199 (336)
386 cd06360 PBP1_alkylbenzenes_lik 44.3 2.1E+02 0.0046 24.8 10.0 126 101-236 64-197 (336)
387 PRK12829 short chain dehydroge 44.3 1.3E+02 0.0029 25.0 7.9 33 47-79 8-41 (264)
388 PF00670 AdoHcyase_NAD: S-aden 44.3 26 0.00055 28.7 3.1 72 163-237 5-87 (162)
389 KOG1371 UDP-glucose 4-epimeras 44.2 1.8E+02 0.0039 26.7 8.7 97 134-240 14-131 (343)
390 PRK00676 hemA glutamyl-tRNA re 44.1 55 0.0012 30.0 5.6 61 46-109 170-233 (338)
391 cd05212 NAD_bind_m-THF_DH_Cycl 44.1 1.4E+02 0.003 23.6 7.3 69 162-238 10-81 (140)
392 COG3473 Maleate cis-trans isom 44.1 72 0.0016 27.4 5.8 150 62-235 20-186 (238)
393 cd08183 Fe-ADH2 Iron-containin 44.0 57 0.0012 29.9 5.8 41 163-206 10-52 (374)
394 PRK14169 bifunctional 5,10-met 44.0 1.7E+02 0.0038 26.1 8.6 138 53-208 35-187 (282)
395 PRK09072 short chain dehydroge 43.8 1.6E+02 0.0034 24.8 8.2 85 47-135 2-89 (263)
396 COG0190 FolD 5,10-methylene-te 43.6 1.6E+02 0.0034 26.4 8.2 140 53-210 35-189 (283)
397 cd01543 PBP1_XylR Ligand-bindi 43.6 1.9E+02 0.0042 24.1 10.3 116 63-204 18-141 (265)
398 PRK00676 hemA glutamyl-tRNA re 43.5 76 0.0016 29.1 6.4 59 176-236 172-234 (338)
399 PRK14173 bifunctional 5,10-met 43.5 1.9E+02 0.004 25.9 8.7 160 51-236 32-206 (287)
400 cd01422 MGS Methylglyoxal synt 43.4 59 0.0013 24.7 4.9 42 66-111 37-79 (115)
401 cd08192 Fe-ADH7 Iron-containin 43.1 70 0.0015 29.2 6.2 66 163-233 11-86 (370)
402 PF09084 NMT1: NMT1/THI5 like; 43.1 17 0.00037 29.8 2.1 61 42-107 85-145 (216)
403 PRK14194 bifunctional 5,10-met 43.1 2.5E+02 0.0055 25.3 9.6 137 53-207 38-189 (301)
404 PRK14187 bifunctional 5,10-met 43.0 2.5E+02 0.0054 25.2 10.2 160 53-236 37-211 (294)
405 TIGR00355 purH phosphoribosyla 42.9 76 0.0017 30.7 6.5 85 111-209 10-96 (511)
406 cd06268 PBP1_ABC_transporter_L 42.9 1.9E+02 0.0042 23.9 10.3 133 91-236 57-198 (298)
407 cd03146 GAT1_Peptidase_E Type 42.7 1.1E+02 0.0024 25.6 7.0 69 162-237 15-89 (212)
408 PRK14172 bifunctional 5,10-met 42.7 2.4E+02 0.0051 25.2 9.2 140 51-208 35-189 (278)
409 KOG4169 15-hydroxyprostaglandi 42.6 37 0.00081 29.7 4.0 74 134-214 17-91 (261)
410 PRK06128 oxidoreductase; Provi 42.5 2E+02 0.0044 25.0 8.9 89 45-135 50-143 (300)
411 cd00578 L-fuc_L-ara-isomerases 42.5 2.3E+02 0.0051 26.6 9.8 140 61-212 24-199 (452)
412 TIGR02026 BchE magnesium-proto 42.4 1.8E+02 0.0038 27.9 9.1 104 60-172 23-136 (497)
413 cd05212 NAD_bind_m-THF_DH_Cycl 42.3 50 0.0011 26.1 4.5 77 47-137 25-102 (140)
414 COG2072 TrkA Predicted flavopr 42.3 50 0.0011 31.2 5.2 47 32-78 157-203 (443)
415 PLN02778 3,5-epimerase/4-reduc 42.1 1.1E+02 0.0023 27.0 7.0 57 49-110 8-65 (298)
416 PRK14166 bifunctional 5,10-met 42.1 2.2E+02 0.0049 25.4 9.0 141 53-210 35-190 (282)
417 PRK14177 bifunctional 5,10-met 42.0 2.3E+02 0.005 25.3 9.1 157 53-235 38-209 (284)
418 PRK03767 NAD(P)H:quinone oxido 42.0 81 0.0018 26.1 6.0 15 224-238 65-79 (200)
419 PF01936 NYN: NYN domain; Int 41.9 23 0.0005 27.1 2.5 82 62-145 49-138 (146)
420 PRK05967 cystathionine beta-ly 41.9 2.2E+02 0.0048 26.5 9.4 97 134-239 61-160 (395)
421 cd06290 PBP1_LacI_like_9 Ligan 41.8 99 0.0021 25.8 6.6 45 93-137 167-214 (265)
422 PRK06138 short chain dehydroge 41.7 1.5E+02 0.0033 24.5 7.8 33 47-79 2-35 (252)
423 PRK09590 celB cellobiose phosp 41.7 1.5E+02 0.0032 22.2 11.6 95 51-173 2-102 (104)
424 cd08182 HEPD Hydroxyethylphosp 41.6 72 0.0016 29.1 6.0 66 163-233 10-82 (367)
425 TIGR01754 flav_RNR ribonucleot 41.6 76 0.0016 24.5 5.4 33 100-135 48-88 (140)
426 cd08186 Fe-ADH8 Iron-containin 41.5 86 0.0019 28.9 6.6 68 163-233 10-89 (383)
427 PF13379 NMT1_2: NMT1-like fam 41.5 1.1E+02 0.0023 26.0 6.8 141 68-238 29-180 (252)
428 PRK08105 flavodoxin; Provision 41.5 1.3E+02 0.0027 23.9 6.7 69 62-141 19-97 (149)
429 PLN02735 carbamoyl-phosphate s 41.3 3.1E+02 0.0067 29.3 11.3 75 39-115 12-113 (1102)
430 PF00994 MoCF_biosynth: Probab 41.1 50 0.0011 25.7 4.3 49 62-114 19-68 (144)
431 cd08171 GlyDH-like2 Glycerol d 41.1 56 0.0012 29.6 5.2 67 164-233 11-83 (345)
432 TIGR01457 HAD-SF-IIA-hyp2 HAD- 40.8 66 0.0014 27.6 5.4 44 102-145 33-80 (249)
433 PRK12825 fabG 3-ketoacyl-(acyl 40.6 1.4E+02 0.0031 24.4 7.3 30 48-77 4-34 (249)
434 PRK06997 enoyl-(acyl carrier p 40.6 2.3E+02 0.0049 24.1 9.1 85 47-135 3-93 (260)
435 TIGR01279 DPOR_bchN light-inde 40.6 1.8E+02 0.0039 27.0 8.6 132 63-207 168-303 (407)
436 cd06328 PBP1_SBP_like_2 Peripl 40.5 2.4E+02 0.0053 24.8 9.2 131 93-235 60-198 (333)
437 PRK12359 flavodoxin FldB; Prov 40.5 1.4E+02 0.0031 24.4 7.1 74 53-135 5-86 (172)
438 COG0075 Serine-pyruvate aminot 40.4 3.1E+02 0.0068 25.6 10.1 64 170-235 72-138 (383)
439 PF13344 Hydrolase_6: Haloacid 40.4 62 0.0014 23.8 4.5 48 162-212 17-66 (101)
440 TIGR01862 N2-ase-Ialpha nitrog 40.3 3.1E+02 0.0066 25.9 10.2 139 60-210 204-350 (443)
441 PF10678 DUF2492: Protein of u 40.3 74 0.0016 22.8 4.6 41 160-201 18-60 (78)
442 PRK06077 fabG 3-ketoacyl-(acyl 40.2 2E+02 0.0043 23.8 8.2 32 47-78 3-35 (252)
443 cd01542 PBP1_TreR_like Ligand- 40.2 1.1E+02 0.0025 25.3 6.7 8 194-201 106-113 (259)
444 PRK09701 D-allose transporter 40.1 1.7E+02 0.0036 25.6 8.0 45 93-137 207-252 (311)
445 cd06278 PBP1_LacI_like_2 Ligan 40.1 1.7E+02 0.0037 24.2 7.8 84 50-137 115-213 (266)
446 PRK09276 LL-diaminopimelate am 40.1 2.8E+02 0.0061 25.0 10.1 46 163-210 102-147 (385)
447 cd08194 Fe-ADH6 Iron-containin 40.1 80 0.0017 29.0 6.1 67 162-233 9-85 (375)
448 cd06271 PBP1_AglR_RafR_like Li 40.1 1.3E+02 0.0028 24.9 7.1 74 64-137 141-219 (268)
449 PRK07890 short chain dehydroge 40.0 1.6E+02 0.0035 24.5 7.7 32 48-79 3-35 (258)
450 cd08176 LPO Lactadehyde:propan 39.9 87 0.0019 28.7 6.3 67 162-233 14-90 (377)
451 PRK14191 bifunctional 5,10-met 39.9 95 0.0021 27.8 6.3 55 46-110 153-208 (285)
452 PRK09417 mogA molybdenum cofac 39.9 43 0.00093 28.1 3.9 51 62-114 25-78 (193)
453 COG0062 Uncharacterized conser 39.8 1.1E+02 0.0024 25.9 6.4 54 164-217 33-92 (203)
454 cd00853 NifX NifX belongs to a 39.7 48 0.001 24.2 3.8 34 132-171 68-101 (102)
455 cd06311 PBP1_ABC_sugar_binding 39.6 83 0.0018 26.5 5.9 50 93-143 176-226 (274)
456 PF02310 B12-binding: B12 bind 39.4 74 0.0016 23.5 4.9 14 192-205 19-32 (121)
457 TIGR01141 hisC histidinol-phos 39.2 2.7E+02 0.0059 24.5 9.7 95 135-238 56-152 (346)
458 COG0436 Aspartate/tyrosine/aro 39.2 52 0.0011 30.5 4.8 73 48-124 111-195 (393)
459 cd06451 AGAT_like Alanine-glyo 39.0 87 0.0019 27.8 6.1 62 48-111 72-133 (356)
460 COG0655 WrbA Multimeric flavod 38.8 39 0.00085 28.2 3.6 58 63-120 21-100 (207)
461 PF04321 RmlD_sub_bind: RmlD s 38.8 23 0.00049 31.2 2.2 59 51-111 1-60 (286)
462 PF08373 RAP: RAP domain; Int 38.8 22 0.00047 23.2 1.6 33 65-97 23-55 (58)
463 cd06367 PBP1_iGluR_NMDA N-term 38.5 2.3E+02 0.0051 25.2 8.9 66 62-127 153-220 (362)
464 PLN03194 putative disease resi 38.4 1.3E+02 0.0029 25.2 6.5 85 19-113 4-93 (187)
465 PF01321 Creatinase_N: Creatin 38.4 1.6E+02 0.0035 21.7 7.1 98 92-199 4-112 (132)
466 cd06452 SepCysS Sep-tRNA:Cys-t 38.3 2.9E+02 0.0063 24.6 10.7 126 110-239 14-150 (361)
467 PF00633 HHH: Helix-hairpin-he 38.3 25 0.00054 20.3 1.6 11 134-144 19-29 (30)
468 PRK05166 histidinol-phosphate 38.3 3E+02 0.0064 24.8 9.6 58 177-238 111-169 (371)
469 PLN03026 histidinol-phosphate 38.3 88 0.0019 28.5 6.1 60 49-112 126-185 (380)
470 PRK13566 anthranilate synthase 38.2 2E+02 0.0042 29.3 8.9 93 46-157 522-621 (720)
471 CHL00073 chlN photochlorophyll 38.1 1.3E+02 0.0029 28.7 7.4 114 48-173 312-438 (457)
472 PRK14174 bifunctional 5,10-met 38.1 3E+02 0.0065 24.7 9.5 159 53-236 36-214 (295)
473 TIGR00177 molyb_syn molybdenum 38.1 46 0.001 26.1 3.7 49 187-240 26-78 (144)
474 TIGR01286 nifK nitrogenase mol 38.0 2.5E+02 0.0055 27.2 9.4 141 60-209 234-394 (515)
475 PLN02240 UDP-glucose 4-epimera 37.9 1.9E+02 0.004 25.6 8.1 33 47-79 2-35 (352)
476 PRK15454 ethanol dehydrogenase 37.9 1.1E+02 0.0023 28.5 6.6 67 162-233 35-111 (395)
477 PF02142 MGS: MGS-like domain 37.8 31 0.00067 25.0 2.5 60 139-210 6-69 (95)
478 cd00609 AAT_like Aspartate ami 37.8 2.3E+02 0.0051 24.4 8.6 74 163-238 68-142 (350)
479 cd06267 PBP1_LacI_sugar_bindin 37.7 2.2E+02 0.0048 23.1 9.4 87 50-136 116-214 (264)
480 cd01968 Nitrogenase_NifE_I Nit 37.7 1.6E+02 0.0036 27.2 7.9 34 46-79 283-316 (410)
481 PLN02331 phosphoribosylglycina 37.6 2.4E+02 0.0053 23.8 8.2 77 159-236 8-86 (207)
482 cd01976 Nitrogenase_MoFe_alpha 37.6 3.3E+02 0.0071 25.5 9.9 99 45-158 295-393 (421)
483 cd03145 GAT1_cyanophycinase Ty 37.5 1.2E+02 0.0026 25.6 6.4 76 162-239 12-94 (217)
484 COG1184 GCD2 Translation initi 37.4 53 0.0011 29.6 4.3 28 52-79 147-176 (301)
485 PRK14181 bifunctional 5,10-met 37.3 2.3E+02 0.0051 25.3 8.4 160 52-236 30-208 (287)
486 cd06371 PBP1_sensory_GC_DEF_li 37.2 2.1E+02 0.0047 25.9 8.5 81 51-135 133-227 (382)
487 PRK08213 gluconate 5-dehydroge 37.1 2.2E+02 0.0048 23.8 8.1 31 48-78 10-41 (259)
488 PRK11091 aerobic respiration c 37.1 4.4E+02 0.0095 26.3 11.5 115 43-174 518-642 (779)
489 cd01541 PBP1_AraR Ligand-bindi 37.1 1.4E+02 0.0031 24.9 7.0 73 65-137 142-221 (273)
490 PRK13479 2-aminoethylphosphona 37.0 1.1E+02 0.0024 27.4 6.5 63 48-111 78-140 (368)
491 PF02401 LYTB: LytB protein; 37.0 1.6E+02 0.0034 26.3 7.2 75 113-207 12-92 (281)
492 PRK05854 short chain dehydroge 37.0 73 0.0016 28.1 5.2 73 47-123 11-89 (313)
493 PLN02765 pyruvate kinase 36.9 1.8E+02 0.004 28.4 8.1 71 105-185 412-511 (526)
494 PRK06523 short chain dehydroge 36.9 76 0.0016 26.7 5.2 35 45-79 4-39 (260)
495 PRK14176 bifunctional 5,10-met 36.8 1.1E+02 0.0023 27.5 6.1 52 47-108 161-213 (287)
496 COG0647 NagD Predicted sugar p 36.8 1.3E+02 0.0027 26.7 6.6 101 60-173 27-144 (269)
497 cd06286 PBP1_CcpB_like Ligand- 36.8 2.4E+02 0.0053 23.3 8.5 37 101-137 174-213 (260)
498 COG0079 HisC Histidinol-phosph 36.7 94 0.002 28.5 6.0 66 50-121 99-174 (356)
499 cd08181 PPD-like 1,3-propanedi 36.6 1.3E+02 0.0029 27.3 7.0 65 163-233 13-88 (357)
500 PRK09004 FMN-binding protein M 36.6 85 0.0018 24.8 5.0 62 63-137 20-91 (146)
No 1
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=100.00 E-value=1.2e-36 Score=265.55 Aligned_cols=188 Identities=22% Similarity=0.215 Sum_probs=164.8
Q ss_pred CCCCeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCC-
Q 026235 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT- 126 (241)
Q Consensus 48 l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~- 126 (241)
+.|++||||||..+...+.+.|+++|++++.+|++++++.++...+...+.++..||||||||+|||++|++.+.+.+.
T Consensus 1 ~~g~~vlvTRp~~~~~~l~~~l~~~G~~~~~~P~i~i~p~~~~~~~~~~l~~l~~~d~iifTS~naV~~~~~~l~~~~~~ 80 (255)
T PRK05752 1 MSGWRLLLTRPAEECAALAASLAEAGIFSSSLPLLAIEPLPETPEQRALLLELDRYCAVIVVSKPAARLGLELLDRYWPQ 80 (255)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHHcCCCEEEcCcEEEeeCCCCHHHHHHHhcCCCCCEEEEECHHHHHHHHHHHHhhCCC
Confidence 4689999999999999999999999999999999999998776667777778899999999999999999998876543
Q ss_pred -CCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHH--hhhC-CCCccEEEEEccCCCchhHHHHHHhCCC
Q 026235 127 -PNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASE--LPKN-GKKKCTVLYPASAKASNEIEEGLSNRGF 202 (241)
Q Consensus 127 -~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~--l~~~-~~~~~~iL~~~g~~~~~~L~~~L~~~G~ 202 (241)
++++++|||++|+++|+++ |+.++++|..+++++|++. +... ..++++||++||+.+++.|.+.|++.|+
T Consensus 81 ~~~~~~~aVG~~Ta~al~~~------G~~~~~~p~~~~se~Ll~~~~l~~~~~~~~~~vLi~rg~~~r~~L~~~L~~~G~ 154 (255)
T PRK05752 81 PPQQPWFSVGAATAAILQDY------GLDVSYPEQGDDSEALLALPALRQALAVPDPRVLIMRGEGGRELLAERLREQGA 154 (255)
T ss_pred CcCCEEEEECHHHHHHHHHc------CCCcccCCCCCCcHHHHhChhhhccccCCCCEEEEEccCccHHHHHHHHHHCCC
Confidence 4689999999999999999 9999998999999999976 3332 2357899999999999999999999999
Q ss_pred eeeEeeeeeeecCCCChHHHHHHc--CCCCEEEEECCccCC
Q 026235 203 EVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVR 241 (241)
Q Consensus 203 ~V~~~~vY~~~~~~~~~~~~~~~l--~~id~IvFtSps~v~ 241 (241)
+|.++.+|++.++......+.+.+ +.+|+|+|||+++++
T Consensus 155 ~v~~~~vY~~~~~~~~~~~~~~~~~~~~~d~v~ftS~~~~~ 195 (255)
T PRK05752 155 SVDYLELYRRCLPDYPAGTLLQRVEAERLNGLVVSSGQGFE 195 (255)
T ss_pred EEeEEEEEeecCCCCCHHHHHHHHHhCCCCEEEECCHHHHH
Confidence 999999999987766555555444 679999999999863
No 2
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=100.00 E-value=3.1e-36 Score=264.76 Aligned_cols=192 Identities=18% Similarity=0.199 Sum_probs=162.8
Q ss_pred cccCCCCCCCeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHH
Q 026235 42 TSASASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAW 121 (241)
Q Consensus 42 ~~~~~~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l 121 (241)
|.+..++.|++||||||..+.+.+.+.|+++|++++.+|++++++..+ ..+...+.++.+||||||||+|||++|+..+
T Consensus 10 ~~~~~~l~g~~IlvTRp~~q~~~l~~~L~~~G~~~~~~P~i~i~~~~~-~~~~~~l~~l~~~d~iiftS~NAV~~~~~~~ 88 (266)
T PRK08811 10 TGAATADAAWTLISLRPSGEHAPLRRAVARHGGRLLALSPWRLQRLDT-AQARDALRQALAAPIVVFTSPAAVRAAHRLL 88 (266)
T ss_pred CCCCcCCCCCEEEEeCCHHHHHHHHHHHHHCCCcEEEcCceeecCCCc-hhHHHHHhhcccCCEEEEECHHHHHHHHHHh
Confidence 345678999999999999999999999999999999999999998754 3445666678899999999999999999655
Q ss_pred HhcCCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEccCCCchhHHHHHHhCC
Q 026235 122 KEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRG 201 (241)
Q Consensus 122 ~~~~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~~~~~~iL~~~g~~~~~~L~~~L~~~G 201 (241)
......+++++|||++|+++|+++ |+.++++|+.+++|+|++..... ..+++||+++|+.+|++|.+.|.++|
T Consensus 89 ~~~~~~~~~~~AVG~~TA~aL~~~------G~~~~~~P~~~~se~Ll~l~~~~-~~g~~vLi~rg~~gr~~L~~~L~~~G 161 (266)
T PRK08811 89 PLQRPARAHWLSVGEGTARALQAC------GIDEVVRPTRMDSEGLLALPLAQ-APLQAVGLITAPGGRGLLAPTLQQRG 161 (266)
T ss_pred cccCccCCeEEEECHHHHHHHHHc------CCCceeCCCCCCcHHHHhChhhh-CCCCEEEEEeCCCcHHHHHHHHHHCC
Confidence 333346899999999999999999 99999999999999999872222 35789999999999999999999999
Q ss_pred CeeeEeeeeeeecCCCChHHHHHHc--CCCCEEEEECCccCC
Q 026235 202 FEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVR 241 (241)
Q Consensus 202 ~~V~~~~vY~~~~~~~~~~~~~~~l--~~id~IvFtSps~v~ 241 (241)
++|+++.+|++.+...........+ ..+|+++|||+++|+
T Consensus 162 ~~V~~~~vY~~~~~~~~~~~~~~l~~~~~~d~i~ftS~sav~ 203 (266)
T PRK08811 162 ARILRADVYQRVPLRLRASTLAALSRAAPRSVLALSSAEALT 203 (266)
T ss_pred CEEeEEEEEeeeCCCCCHHHHHHHHHhCCCCEEEEChHHHHH
Confidence 9999999999988765443222221 579999999999863
No 3
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=100.00 E-value=2e-34 Score=250.79 Aligned_cols=183 Identities=35% Similarity=0.462 Sum_probs=164.5
Q ss_pred CCeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCC---
Q 026235 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT--- 126 (241)
Q Consensus 50 g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~--- 126 (241)
||+|+|||++.+.+++...|+++|+++..+|++++.+..+ +...+..+..+|||+|||+|||++|++.+...+.
T Consensus 1 ~~~vlvtR~~~~~~~~~~~l~~~G~~~~~~P~i~~~~~~~---l~~~l~~l~~~d~vvfTS~~av~~~~~~l~~~~~~~~ 77 (248)
T COG1587 1 GMRVLVTRPREQAEELAALLRKAGAEPLELPLIEIEPLPD---LEVALEDLDSADWVVFTSPNAVRFFFEALKEQGLDAL 77 (248)
T ss_pred CcEEEEeCchhhhHHHHHHHHhCCCcceeecceeeecchh---HHHHHhccccCCEEEEECHHHHHHHHHHHHhhccccc
Confidence 6899999999999999999999999999999999998654 5556667777999999999999999999987664
Q ss_pred CCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEccCCCchhHHHHHHhCCCeeeE
Q 026235 127 PNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVR 206 (241)
Q Consensus 127 ~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~~~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~ 206 (241)
.+.+++|||++|+++|+++ |+.++++|+++++++|++.+.+....++++++++|+.+++.|.+.|.++|++|.+
T Consensus 78 ~~~~i~aVG~~Ta~~l~~~------G~~~~~~p~~~~~~~l~~~l~~~~~~~~~vl~~~~~~~r~~l~~~L~~~G~~v~~ 151 (248)
T COG1587 78 KNKKIAAVGEKTAEALRKL------GIKVDFIPEDGDSEGLLEELPELLKGGKRVLILRGNGGREVLEEKLEERGAEVRE 151 (248)
T ss_pred ccCeEEEEcHHHHHHHHHh------CCCCCcCCCccchHHHHHHhhhhccCCCeEEEEcCCCchHHHHHHHHhCCCEEEE
Confidence 3799999999999999999 9999999999999999999998875578999999999999999999999999999
Q ss_pred eeeeeeecCCCChHHHHHH--cCCCCEEEEECCccCC
Q 026235 207 LNTYTTEPVHHVDQTVLKQ--ALSIPVVAVASPSAVR 241 (241)
Q Consensus 207 ~~vY~~~~~~~~~~~~~~~--l~~id~IvFtSps~v~ 241 (241)
+.+|++.+.....+.+... .+.+|+|+|||+++|+
T Consensus 152 ~~~Y~~~~~~~~~~~~~~~~~~~~~d~v~ftS~~~v~ 188 (248)
T COG1587 152 VEVYRTEPPPLDEATLIELLKLGEVDAVVFTSSSAVR 188 (248)
T ss_pred EeeeeecCCCccHHHHHHHHHhCCCCEEEEeCHHHHH
Confidence 9999999999874433333 3799999999999874
No 4
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Probab=100.00 E-value=5.8e-34 Score=261.74 Aligned_cols=191 Identities=20% Similarity=0.199 Sum_probs=164.3
Q ss_pred cCCCCCCCeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcC--CCccEEEEeCHHHHHHHHHHH
Q 026235 44 ASASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD--TIFDWIIITSPEAGSVFLEAW 121 (241)
Q Consensus 44 ~~~~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l--~~~d~IiFTS~~aV~~f~~~l 121 (241)
...||+|++|+|||+. +...+.+.|+++|++++.+|++++++..+...++..+..+ +.||||||||+|||++|++.+
T Consensus 5 ~~~pL~g~rIlvtr~~-~a~~la~~L~~~G~~~~~~P~i~i~~~~~~~~~~~~~~~l~~~~~d~vvfTS~ngv~~~~~~l 83 (381)
T PRK07239 5 DSAPLAGFTVGVTAAR-RAEELAALLERRGARVVHAPALRIVPLADDDELRAATRALIAAPPDIVVATTGIGFRGWVEAA 83 (381)
T ss_pred CCCCCCCcEEEEeccC-CHHHHHHHHHHcCCeEEEecCEEEecCCCcHHHHHHHHHHHcCCCCEEEEeChHHHHHHHHHH
Confidence 4679999999999987 8999999999999999999999999987655566666554 689999999999999999988
Q ss_pred HhcCC--------CCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEccC-----C
Q 026235 122 KEAGT--------PNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASA-----K 188 (241)
Q Consensus 122 ~~~~~--------~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~~~~~~iL~~~g~-----~ 188 (241)
.+.+. .+++++|||++|+++|+++ |+.++++|..+++++|++.+.....++++|++++++ .
T Consensus 84 ~~~~~~~~~~~~l~~~~i~aVG~~Ta~aL~~~------G~~~~~~p~~~~~e~L~~~l~~~~~~g~~vli~~~~~~~~~~ 157 (381)
T PRK07239 84 DGWGLADELLEALSSARLLARGPKATGAIRAA------GLREEWSPASESSAEVLEYLLEEGVAGKRIAVQLHGATDEWE 157 (381)
T ss_pred HHcCChHHHHHHHcCCeEEEECccHHHHHHHc------CCCCccCCCCCccHHHHHHHhcCCCCCCEEEEEcCCCccccC
Confidence 76553 4789999999999999999 999999999999999999998765678999998876 4
Q ss_pred CchhHHHHHHhCCCeeeEeeeeeeecCCCCh--HHHHHHc--CCCCEEEEECCccCC
Q 026235 189 ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVD--QTVLKQA--LSIPVVAVASPSAVR 241 (241)
Q Consensus 189 ~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~--~~~~~~l--~~id~IvFtSps~v~ 241 (241)
.+++|.+.|++.|++|.++.+|+++++.... ..+.+.+ +.+|+|+|||+++|+
T Consensus 158 ~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~~l~~~~~d~v~FtS~stv~ 214 (381)
T PRK07239 158 PLPEFLEALRAAGAEVVPVPVYRWVPPPDPGPLDRLVDAIASRGLDAVTFTSAPAVA 214 (381)
T ss_pred chHHHHHHHHHCCCEEEEeCcEEEcCCCChhHHHHHHHHHHcCCccEEEEcCHHHHH
Confidence 4578999999999999999999998765433 2344444 579999999999874
No 5
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=100.00 E-value=1.1e-33 Score=244.58 Aligned_cols=180 Identities=20% Similarity=0.155 Sum_probs=151.5
Q ss_pred CeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhc-CCCCc
Q 026235 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA-GTPNV 129 (241)
Q Consensus 51 ~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~-~~~~~ 129 (241)
|+||+|||..+...+.+.|+++|++++.+|++++++.++ .....+ ...+|||||||+|||++|.+...+. .+.++
T Consensus 1 m~VLvTRp~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~--~~~~~l--~~~~d~iifTS~naV~~~~~~~~~~~~~~~~ 76 (240)
T PRK09189 1 MRVLVTRPEPAAERTAARLRAMGHEPVLLPLSRPVHDVA--AAFTAL--SEPHGAIAVTSAEAVRHLAALGERLLPHLAL 76 (240)
T ss_pred CeEEEECCCCchHHHHHHHHHCCCceEEecccccccChh--hhhhhh--cCCcCEEEEECHHHHHHHHhcchhhHHhcCC
Confidence 689999999999999999999999999999999987542 111222 2468999999999999987643221 13478
Q ss_pred EEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEccCCCchhHHHHHHhCCCeeeEeee
Q 026235 130 RIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNT 209 (241)
Q Consensus 130 ~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~~~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~~~v 209 (241)
+++|||++|+++|+++ |+.. ++|..+++|+|++.+......+++||++||+.++++|.+.|++.|+.|.++.+
T Consensus 77 ~~~aVG~~Ta~~l~~~------G~~~-~~~~~~~~e~L~~~~~~~~~~~~~vL~~rg~~~r~~l~~~L~~~G~~v~~~~v 149 (240)
T PRK09189 77 PLFAVGEATAEAAREL------GFRH-VIEGGGDGVRLAETVAAALAPTARLLYLAGRPRAPVFEDRLAAAGIPFRVAEC 149 (240)
T ss_pred eEEEEcHHHHHHHHHc------CCCC-CcCCCCCHHHHHHHHHHhcCCCCcEEEeccCcccchhHHHHHhCCCeeEEEEE
Confidence 9999999999999999 9984 57778999999999976644678999999999999999999999999999999
Q ss_pred eeeecCCCChHHHHHHc--CCCCEEEEECCccCC
Q 026235 210 YTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVR 241 (241)
Q Consensus 210 Y~~~~~~~~~~~~~~~l--~~id~IvFtSps~v~ 241 (241)
|++.+.+....++.+.+ +++|+|+||||++|+
T Consensus 150 Y~~~~~~~~~~~~~~~l~~~~~d~i~f~S~~~~~ 183 (240)
T PRK09189 150 YDMLPVMYSPATLSAILGGAPFDAVLLYSRVAAR 183 (240)
T ss_pred EEeecCCCChHHHHHHHhcCCCCEEEEeCHHHHH
Confidence 99998876665555544 579999999999874
No 6
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=100.00 E-value=3.8e-32 Score=233.77 Aligned_cols=184 Identities=28% Similarity=0.341 Sum_probs=159.5
Q ss_pred CeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhc---CCC
Q 026235 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA---GTP 127 (241)
Q Consensus 51 ~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~---~~~ 127 (241)
|+||+||+....+.+.+.|+++|++++.+|++++++.+.... ...+..++.+|+|||||+++|++|++.+.+. .+.
T Consensus 2 ~~ilitr~~~~~~~l~~~l~~~G~~v~~~p~~~~~~~~~~~~-~~~~~~~~~~d~iiftS~~av~~~~~~~~~~~~~~~~ 80 (249)
T PRK05928 2 MKILVTRPSPKAEELVELLRELGFVALHFPLIEIEPGRQLPQ-LAAQLAALGADWVIFTSKNAVEFLLSALKKKKLKWPK 80 (249)
T ss_pred CEEEEeCCHHHHHHHHHHHHHcCCCEEEeccEEEecCCCcCh-HHHHhhCCCCCEEEEECHHHHHHHHHHHHhcCcCCCC
Confidence 799999999999999999999999999999999999765433 3344467899999999999999999988732 235
Q ss_pred CcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEccCCCchhHHHHHHhCCCeeeEe
Q 026235 128 NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRL 207 (241)
Q Consensus 128 ~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~~~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~~ 207 (241)
+.+++|||++|+++|+++ |+.++++|+.++.+++++.|.+....++++|++||+.+++.|.+.|++.|++|.++
T Consensus 81 ~~~~~avG~~Ta~~l~~~------G~~~~~~~~~~~~~~l~~~l~~~~~~~~~ili~~~~~~~~~l~~~L~~~G~~v~~~ 154 (249)
T PRK05928 81 NKKYAAIGEKTALALKKL------GGKVVFVPEDGESSELLLELPELLLKGKRVLYLRGNGGREVLGDTLEERGAEVDEC 154 (249)
T ss_pred CCEEEEECHHHHHHHHHc------CCCccccCCCCcChHHHHhChhhhcCCCEEEEECCCCCHHHHHHHHHHCCCEEeEE
Confidence 799999999999999999 99999999999999999999887446789999999999999999999999999999
Q ss_pred eeeeeecCCCChHHHHHHc--CCCCEEEEECCccCC
Q 026235 208 NTYTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVR 241 (241)
Q Consensus 208 ~vY~~~~~~~~~~~~~~~l--~~id~IvFtSps~v~ 241 (241)
.+|++.+...........+ +.+|+|+|||+++|+
T Consensus 155 ~~Y~~~~~~~~~~~~~~~~~~~~~d~ivftS~~~v~ 190 (249)
T PRK05928 155 EVYERVPPKLDGAELLARLQSGEVDAVIFTSPSTVR 190 (249)
T ss_pred EEEEeeCCCCChHHHHHHHHhCCCCEEEECCHHHHH
Confidence 9999998765443333222 689999999999873
No 7
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=100.00 E-value=4.8e-32 Score=263.78 Aligned_cols=187 Identities=21% Similarity=0.218 Sum_probs=162.0
Q ss_pred CCCeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCCCC
Q 026235 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPN 128 (241)
Q Consensus 49 ~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~ 128 (241)
.+++||||||..+...+.+.|+++|++++.+|++++++..+...+...+..+..||||||||+|||++|++.+......+
T Consensus 2 ~~~~VLVTRp~~qa~~la~~L~~~G~~vi~~Pli~i~p~~~~~~l~~~l~~L~~yd~iIFTS~nAV~~~~~~l~~~~~~~ 81 (656)
T PRK06975 2 RAFTVVVTRPDGQSAALAAQLAAAGLDVLDFPLLDIAPVADDAPLRAALARLSDYALVVFVSPNAVDRALARLDAIWPHA 81 (656)
T ss_pred CCCEEEEeCcHhHHHHHHHHHHHcCCCEEEcccEEeeCCCChHHHHHHHHhCCCCCEEEEECHHHHHHHHHHHHhhCccC
Confidence 47899999999999999999999999999999999999876666777777889999999999999999999887654467
Q ss_pred cEEEEeCHHHHHHHHHhhhccCCCCceeec------------CCCCCHHHHHHHhhhCC--CCccEEEEEccCCCchhHH
Q 026235 129 VRIGVVGAGTASIFEEVIQSSKCSLDVAFS------------PSKATGKILASELPKNG--KKKCTVLYPASAKASNEIE 194 (241)
Q Consensus 129 ~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~------------p~~~t~e~L~~~l~~~~--~~~~~iL~~~g~~~~~~L~ 194 (241)
++++|||++|+++|+++ |+.++++ |..+++|+|++.+.... ..+++||++||+++++.|.
T Consensus 82 ~~i~AVG~~Ta~aL~~~------Gi~~~~~~~~~P~~~~~~p~~~~~se~Ll~~l~~~~~~~~g~rVLi~rG~~gr~~L~ 155 (656)
T PRK06975 82 LPVAVVGPGSVAALARH------GIAAPAHRVIAPDAPADGGEARYDSEALFAEIDAAFGALAGKRVLIVRGDGGREWLA 155 (656)
T ss_pred CeEEEECHHHHHHHHHc------CCCCceeeccccccccCCCCCccchHHHHHhHHHhccCCCCCEEEEEcCCCCcHHHH
Confidence 89999999999999999 9998887 46789999999998754 4679999999999999999
Q ss_pred HHHHhCCCeeeEeeeeeeecCCCChH---HHHHHc-CCCCEEEEECCccCC
Q 026235 195 EGLSNRGFEVVRLNTYTTEPVHHVDQ---TVLKQA-LSIPVVAVASPSAVR 241 (241)
Q Consensus 195 ~~L~~~G~~V~~~~vY~~~~~~~~~~---~~~~~l-~~id~IvFtSps~v~ 241 (241)
+.|++.|+.|.++.||++..+..... .+.+.+ +.+|+|+|||+++|+
T Consensus 156 ~~L~~~Ga~V~~v~vY~~~~~~~~~~~~~~~~~~l~~~idav~fTS~s~v~ 206 (656)
T PRK06975 156 ERLREAGAEVELVEAYRRVVPEPSIGAWERVHALLSGAPHAWLLTSSEAVR 206 (656)
T ss_pred HHHHHCCCEEEEEeEEEeeCCCcchhHHHHHHHHHhCCCcEEEECCHHHHH
Confidence 99999999999999999865443222 222223 579999999999874
No 8
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=99.97 E-value=4.1e-30 Score=219.11 Aligned_cols=181 Identities=33% Similarity=0.460 Sum_probs=158.0
Q ss_pred EEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhc---CCCCc
Q 026235 53 VVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA---GTPNV 129 (241)
Q Consensus 53 VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~---~~~~~ 129 (241)
||+||+....+.+.+.|+++|+++..+|+|++++. +...+...+..+..+|+|||||+++|++|++.+... .+.++
T Consensus 1 iLi~r~~~~~~~l~~~L~~~G~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~~~iiftS~~av~~~~~~~~~~~~~~~~~~ 79 (239)
T cd06578 1 VLVTRPRPQADELAALLEALGAEVLELPLIEIEPL-DDAELDAALADLDEYDWLIFTSPNAVEAFFEALEELGLRALAGL 79 (239)
T ss_pred CEecCchHHhHHHHHHHHHcCCcEEEeeeEEEecC-ChHHHHHHHHhcCCCCEEEEECHHHHHHHHHHHHhhCCccccCC
Confidence 68999999899999999999999999999999986 445555566667799999999999999999988764 34689
Q ss_pred EEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEccCCCchhHHHHHHhCCCeeeEeee
Q 026235 130 RIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNT 209 (241)
Q Consensus 130 ~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~~~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~~~v 209 (241)
+++|||++|+++|++. |+.++++|+.+++++|++.|.++...++++++++|+.+++.|.+.|++.|++|.++.+
T Consensus 80 ~~~avG~~Ta~~l~~~------g~~~~~~~~~~~~~~L~~~i~~~~~~~~~il~~~g~~~~~~l~~~L~~~g~~v~~~~~ 153 (239)
T cd06578 80 KIAAVGPKTAEALREA------GLTADFVPEEGDSEGLLELLELQDGKGKRILRPRGGRAREDLAEALRERGAEVDEVEV 153 (239)
T ss_pred EEEEECHHHHHHHHHc------CCCceeCCCccCHHHHHHHHHhcCCCCCEEEEEcCcchhHHHHHHHHHCCCEEEEEEE
Confidence 9999999999999999 9999998889999999999998744678999999999999999999999999999999
Q ss_pred eeeecCCCChHHHHHHc--CCCCEEEEECCccCC
Q 026235 210 YTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVR 241 (241)
Q Consensus 210 Y~~~~~~~~~~~~~~~l--~~id~IvFtSps~v~ 241 (241)
|++.+.+.. ....+.+ ..+|+|+|||+++|+
T Consensus 154 Y~~~~~~~~-~~~~~~l~~~~~~~iiftS~~~v~ 186 (239)
T cd06578 154 YRTVPPDLD-AELLELLEEGAIDAVLFTSPSTVR 186 (239)
T ss_pred EEEECCCCc-HHHHHHHHcCCCcEEEEeCHHHHH
Confidence 999988754 2223333 467899999998864
No 9
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=99.97 E-value=3.8e-31 Score=226.19 Aligned_cols=171 Identities=31% Similarity=0.439 Sum_probs=145.6
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCC--CccEEEEeCHHHHHHHHHHHHhcC-----CCCcEEEEeC
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT--IFDWIIITSPEAGSVFLEAWKEAG-----TPNVRIGVVG 135 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~--~~d~IiFTS~~aV~~f~~~l~~~~-----~~~~~i~aIG 135 (241)
+++++.|+++|++++.+|++++++..+...+...++.+. .||||||||++||++|++.+...+ +.+++++|||
T Consensus 1 ~~l~~~l~~~G~~~~~~P~i~~~~~~~~~~l~~~l~~l~~~~~d~viftS~~av~~~~~~l~~~~~~~~~~~~~~i~avG 80 (231)
T PF02602_consen 1 SELAALLRALGAEVIELPLIEIEPLPDLASLEAALEQLPPGNYDWVIFTSPNAVRAFFKALQSAGADLRLLKNIKIFAVG 80 (231)
T ss_dssp -HHHHHHHHTTEEEEEEESEEEEECCHHHHHHHHHHHHTGCCSSEEEESSHHHHHHHHHHHHHTTHHHHHHHHSEEEESS
T ss_pred CHHHHHHHHCCCcEEEECCEEEEeCCCHHHHHHHHHhcccCCCCEEEEECHHHHHHHHHHHhhhhhhhhhccCCeEEEEc
Confidence 468899999999999999999999666666777776665 999999999999999999887322 2478999999
Q ss_pred HHHHHHHHHhhhccCCCCceeecCC-CCCHHHHHHHhhhCCCCccEEEEEccCCCchhHHHHHHhCCCeeeEeeeeeeec
Q 026235 136 AGTASIFEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEP 214 (241)
Q Consensus 136 ~~Ta~~L~~~~~~~~~Gi~~~~~p~-~~t~e~L~~~l~~~~~~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~ 214 (241)
++|+++|+++ |+.++++|. .+++++|++.|.+... ++++|++||+.++++|.+.|+++|++|.++.||++ +
T Consensus 81 ~~Ta~~l~~~------G~~~~~~~~~~~~s~~L~~~l~~~~~-~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~-~ 152 (231)
T PF02602_consen 81 PKTAEALREY------GFQPDFVPSSEGSSEGLAELLKEQLR-GKRVLILRGEGGRPDLPEKLREAGIEVTEVIVYET-P 152 (231)
T ss_dssp HHHHHHHHHT------T-EECEE-TTSSSHHHHHGGHHHCCT-TEEEEEEESSSSCHHHHHHHHHTTEEEEEEECEEE-E
T ss_pred HHHHHHHHHc------CCCccccCCCCCCHHHHHHHHHhhCC-CCeEEEEcCCCccHHHHHHHHHCCCeEEEEEEeec-c
Confidence 9999999999 999998998 8999999999987654 48999999999999999999999999999999999 5
Q ss_pred CCCChHHHHHHc--CCCCEEEEECCccCC
Q 026235 215 VHHVDQTVLKQA--LSIPVVAVASPSAVR 241 (241)
Q Consensus 215 ~~~~~~~~~~~l--~~id~IvFtSps~v~ 241 (241)
......++.+.+ +.+|+|+||||++|+
T Consensus 153 ~~~~~~~~~~~l~~~~~~~v~ftS~~~~~ 181 (231)
T PF02602_consen 153 PEELSPELKEALDRGEIDAVVFTSPSAVR 181 (231)
T ss_dssp EHHHHHHHHHHHHHTTTSEEEESSHHHHH
T ss_pred cccchHHHHHHHHcCCCCEEEECCHHHHH
Confidence 444444555544 799999999999873
No 10
>PRK07168 bifunctional uroporphyrinogen-III methyltransferase/uroporphyrinogen-III synthase; Reviewed
Probab=99.94 E-value=2.4e-26 Score=216.10 Aligned_cols=168 Identities=10% Similarity=0.103 Sum_probs=139.7
Q ss_pred CCCCCCCeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhc
Q 026235 45 SASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA 124 (241)
Q Consensus 45 ~~~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~ 124 (241)
.+||.|++||+||+..+...+.+.|+++|++++.+|.+++++.+.. +..+.++.+||||+|||+|||+.|++.+.+.
T Consensus 246 ~~PL~G~~IlVtR~~~q~~~l~~~L~~~GA~v~~~P~i~~~~~~~~---~~~l~~l~~ydwlvFTS~ngV~~Ff~~l~~~ 322 (474)
T PRK07168 246 RKPLHGKKVLFTSATNKTSVMKQKLQEAGAEIYQIPTFKKEEYTLT---LEQINEIFNVNRLVFCSAESVEILMQSCSKY 322 (474)
T ss_pred cccccCceEEeeccHHHHHHHHHHHHHcCCEEEEeccEEeeCCCCc---HHHHHHhccCCEEEEcCHHHHHHHHHHHHHc
Confidence 5899999999999999999999999999999999999998764332 3455567889999999999999999999987
Q ss_pred CCC----CcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEccCCCchhHHHHHHhC
Q 026235 125 GTP----NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNR 200 (241)
Q Consensus 125 ~~~----~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~~~~~~iL~~~g~~~~~~L~~~L~~~ 200 (241)
+++ ..+++|||++|+++|+++ |+.++ |+.+++|++++. ... . ++++++++. .
T Consensus 323 ~~D~R~l~~kiaavG~~Ta~aL~~~------Gl~~d--p~~~~~e~~l~~-g~~--~-~~vl~~~~~------------~ 378 (474)
T PRK07168 323 KKDIRSLQAELQHMNVATQEKLMQY------GLLSK--EAKFSSDTTVYL-GRN--I-NRIAFIQEK------------I 378 (474)
T ss_pred CCChHHhCCEEEEECHHHHHHHHhC------CCccC--CcccccceeEEe-ccc--c-cceeecccC------------C
Confidence 763 479999999999999999 99985 899999999966 222 2 699999965 5
Q ss_pred CCe-eeEeeeee--eecCCCChHHHHHHcCCCCEEEEECCccCC
Q 026235 201 GFE-VVRLNTYT--TEPVHHVDQTVLKQALSIPVVAVASPSAVR 241 (241)
Q Consensus 201 G~~-V~~~~vY~--~~~~~~~~~~~~~~l~~id~IvFtSps~v~ 241 (241)
|+. |.+...|+ +........++.+ .-+|+|+|||+++|+
T Consensus 379 g~~~~~~~~~y~~~~~~~~~~~~~l~e--~~~d~iiFtS~ssV~ 420 (474)
T PRK07168 379 GAGSYMMTHKYTIDHRFDEVHSRMLSE--FLWDSIVFEGRASID 420 (474)
T ss_pred CCceEEEEEEeeccccccchhhhHHhh--ccCceEEECCHHHHH
Confidence 666 99999999 6665443333332 238999999999874
No 11
>KOG4132 consensus Uroporphyrinogen III synthase UROS/HEM4 [Coenzyme transport and metabolism]
Probab=99.93 E-value=1.1e-24 Score=182.38 Aligned_cols=185 Identities=17% Similarity=0.229 Sum_probs=158.3
Q ss_pred CCeEEEeCCCC-ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhc----
Q 026235 50 NPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA---- 124 (241)
Q Consensus 50 g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~---- 124 (241)
.++|++..... ..+.+.+.|+.+|.++..+|+++.+.. +.++++..|+..++|-.|||||++.|+++.+.+.+.
T Consensus 3 ~~~vlllK~~s~~~D~Y~~~l~~~~~epifIP~l~f~f~-~l~~lr~kL~~p~kY~giIfTSpR~VEa~~eaL~q~~tel 81 (260)
T KOG4132|consen 3 KVTVLLLKNKSVPIDPYEEELRSYGLEPIFIPVLSFTFV-NLQQLRAKLNNPPKYAGIIFTSPRCVEALNEALIQTETEL 81 (260)
T ss_pred ceeEEEecCCCCCCCHHHHHHHhcCCCceeecceeeeec-cHHHHHHHhcCchhhceeEEeChHHHHHHHHHhccccchh
Confidence 34788887765 788999999999999999999999875 456788888888999999999999999999998832
Q ss_pred --CCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhC--CCCccEEEEEccCCCchhHHHHHHhC
Q 026235 125 --GTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN--GKKKCTVLYPASAKASNEIEEGLSNR 200 (241)
Q Consensus 125 --~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~--~~~~~~iL~~~g~~~~~~L~~~L~~~ 200 (241)
.|..+.+|+||++|...++.. |+-...--+-.+++.|.+.|.+. .....++|++||+..|+.|+..|..+
T Consensus 82 ~~~w~a~~vYtVG~aT~~si~~~------~~l~T~Ge~~gNa~~LaD~Ive~~~~~~alPLLfpcGn~~rdil~kkL~~~ 155 (260)
T KOG4132|consen 82 KAAWLAKHVYTVGPATHASIRRL------GFLNTHGEDAGNAEILADLIVETFTDKRALPLLFPCGNLRRDILPKKLHDK 155 (260)
T ss_pred hhHHhhcceeeeccccHHHHHHh------cCccccccccccHHHHhHhhhhcCCCcccCceEEEcccchhHHHHHHHHhC
Confidence 346789999999999999998 66443333467899999999985 33456899999999999999999999
Q ss_pred CCeeeEeeeeeeecCCCChHHHHHHc---CCCCEEEEECCccCC
Q 026235 201 GFEVVRLNTYTTEPVHHVDQTVLKQA---LSIPVVAVASPSAVR 241 (241)
Q Consensus 201 G~~V~~~~vY~~~~~~~~~~~~~~~l---~~id~IvFtSps~v~ 241 (241)
|+.|++|.||+|+..++...++.+.+ +.+|+|+|+|||+++
T Consensus 156 G~~Vds~~VY~T~~hp~~~~~~~~alk~~~~~d~ivfFSPsgv~ 199 (260)
T KOG4132|consen 156 GIRVDSCEVYETREHPDGFKQFIHALKECGFIDWIVFFSPSGVK 199 (260)
T ss_pred CceeeEEEEEeeeecccHHHHHHHHHHhcCCcceEEEECcchHH
Confidence 99999999999999998887777666 579999999999873
No 12
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=99.74 E-value=3.9e-17 Score=140.29 Aligned_cols=120 Identities=22% Similarity=0.247 Sum_probs=103.4
Q ss_pred CCCCeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCCc-hHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcC-
Q 026235 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDT-DRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAG- 125 (241)
Q Consensus 48 l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~-~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~- 125 (241)
+.|++||++|+....+.+.+.|+++|+++..+|+|++++.... ......+. .+.+|+|+|||+++|++|++.+...+
T Consensus 123 ~~~~~ili~~~~~~~~~l~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~~~-~~~~d~ivftS~~~v~~~~~~~~~~~~ 201 (249)
T PRK05928 123 LKGKRVLYLRGNGGREVLGDTLEERGAEVDECEVYERVPPKLDGAELLARLQ-SGEVDAVIFTSPSTVRAFFSLAPELGR 201 (249)
T ss_pred cCCCEEEEECCCCCHHHHHHHHHHCCCEEeEEEEEEeeCCCCChHHHHHHHH-hCCCCEEEECCHHHHHHHHHHhcccch
Confidence 6799999999999999999999999999999999999876432 22223221 36899999999999999999887654
Q ss_pred ---CCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhC
Q 026235 126 ---TPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (241)
Q Consensus 126 ---~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~ 174 (241)
+.+++++|||+.|+++|+++ |+.++++|+.++.++|+++|.+.
T Consensus 202 ~~~~~~~~~~aiG~~Ta~~l~~~------G~~~~~~~~~~~~~~l~~~l~~~ 247 (249)
T PRK05928 202 REWLLSCKAVVIGERTAEALREL------GIKVIIVPDSADNEALLRALKEL 247 (249)
T ss_pred hHHHhCCeEEEeCHHHHHHHHHc------CCCcceecCCCChHHHHHHHHHh
Confidence 24789999999999999999 99999999999999999998764
No 13
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=99.70 E-value=4.9e-16 Score=132.24 Aligned_cols=118 Identities=21% Similarity=0.272 Sum_probs=103.3
Q ss_pred CCCCCeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhc--
Q 026235 47 SNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA-- 124 (241)
Q Consensus 47 ~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~-- 124 (241)
.+.+++|+++|+......+.+.|+++|+.+..+|+|++++.++.+.....+. ...+|+|+|||+++|+.|++.+.+.
T Consensus 119 ~~~~~~il~~~g~~~~~~l~~~L~~~g~~v~~~~~Y~~~~~~~~~~~~~~l~-~~~~~~iiftS~~~v~~f~~~~~~~~~ 197 (239)
T cd06578 119 DGKGKRILRPRGGRAREDLAEALRERGAEVDEVEVYRTVPPDLDAELLELLE-EGAIDAVLFTSPSTVRNLLELLGKEGR 197 (239)
T ss_pred CCCCCEEEEEcCcchhHHHHHHHHHCCCEEEEEEEEEEECCCCcHHHHHHHH-cCCCcEEEEeCHHHHHHHHHHHhhhhh
Confidence 3679999999999888999999999999999999999998765445555563 3578899999999999999998764
Q ss_pred -CCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHh
Q 026235 125 -GTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASEL 171 (241)
Q Consensus 125 -~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l 171 (241)
.+.+++++|||+.|+++|++. |++++++++.++.++|+++|
T Consensus 198 ~~~~~~~~~aig~~t~~~l~~~------g~~~~~~~~~~~~~~l~~~i 239 (239)
T cd06578 198 ALLKNVKIAAIGPRTAEALREL------GLKVVIVAESPTLEALLEAL 239 (239)
T ss_pred hhhcCCeEEEECHHHHHHHHHc------CCCceeeecCCChHHHHhhC
Confidence 346899999999999999999 99999999999999999764
No 14
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Probab=99.68 E-value=7.1e-16 Score=141.89 Aligned_cols=122 Identities=20% Similarity=0.279 Sum_probs=100.6
Q ss_pred CCCCCCCeEEEeCCC-----CChHHHHHHHHHCCCcEEEeceEEEeeCCCch---HHHHHHhcCCCccEEEEeCHHHHHH
Q 026235 45 SASNSNPKVVVTRER-----GKNGKLIKALAKHRIDCLELPLIQHAQGPDTD---RLSSVLNADTIFDWIIITSPEAGSV 116 (241)
Q Consensus 45 ~~~l~g~~VLitR~~-----~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~---~l~~~l~~l~~~d~IiFTS~~aV~~ 116 (241)
.....|++|++++.. ...+.+.+.|++.|++|..+|+|++++..+.+ .+...+ .-+.+|+|+|||+++|++
T Consensus 137 ~~~~~g~~vli~~~~~~~~~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~~l-~~~~~d~v~FtS~stv~~ 215 (381)
T PRK07239 137 EEGVAGKRIAVQLHGATDEWEPLPEFLEALRAAGAEVVPVPVYRWVPPPDPGPLDRLVDAI-ASRGLDAVTFTSAPAVAA 215 (381)
T ss_pred cCCCCCCEEEEEcCCCccccCchHHHHHHHHHCCCEEEEeCcEEEcCCCChhHHHHHHHHH-HcCCccEEEEcCHHHHHH
Confidence 345789999998765 34568999999999999999999998764432 334444 236899999999999999
Q ss_pred HHHHHHhcCC---------CCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhC
Q 026235 117 FLEAWKEAGT---------PNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (241)
Q Consensus 117 f~~~l~~~~~---------~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~ 174 (241)
|++.+.+.+. .+++++||||.|+++|+++ |+.+ .+|+.++.++|+++|.+.
T Consensus 216 f~~~l~~~~~~~~~~~~~~~~~~i~aIGp~Ta~al~~~------G~~~-~vp~~~t~~~Lv~~i~~~ 275 (381)
T PRK07239 216 LLERAREMGLLDQLLAALRTDVLAACVGPVTAAPLVRA------GVPT-SAPERMRLGALARHITEE 275 (381)
T ss_pred HHHHHHHcCChHHHHHhhccCCEEEEECHHHHHHHHHc------CCCc-cCCCCCCHHHHHHHHHHH
Confidence 9999876432 4688999999999999999 9998 589999999999999765
No 15
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=99.66 E-value=2e-15 Score=131.81 Aligned_cols=121 Identities=12% Similarity=0.111 Sum_probs=104.1
Q ss_pred CCCCeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCC-chHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhc--
Q 026235 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPD-TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA-- 124 (241)
Q Consensus 48 l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~-~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~-- 124 (241)
..|++||++|+..+++.+.+.|++.|++|..+++|++++... ...+.+.+ ..+.+|+|+|||++++++|++.+...
T Consensus 128 ~~~~~vLi~rg~~~r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~-~~~~~d~v~ftS~~~~~~~~~~~~~~~~ 206 (255)
T PRK05752 128 VPDPRVLIMRGEGGRELLAERLREQGASVDYLELYRRCLPDYPAGTLLQRV-EAERLNGLVVSSGQGFEHLQQLAGADWP 206 (255)
T ss_pred CCCCEEEEEccCccHHHHHHHHHHCCCEEeEEEEEeecCCCCCHHHHHHHH-HhCCCCEEEECCHHHHHHHHHHhChhHH
Confidence 468999999999999999999999999999999999876543 34455555 34789999999999999999987542
Q ss_pred CCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCC
Q 026235 125 GTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG 175 (241)
Q Consensus 125 ~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~ 175 (241)
.+.+++++|||+.|++++++. |+....+++.++.++|+++|.+..
T Consensus 207 ~~~~~~~~~ig~~ta~a~~~~------G~~~~~~a~~~t~~~L~~al~~~~ 251 (255)
T PRK05752 207 ELARLPLFVPSPRVAEQARAA------GAQTVVDCRGASAAALLAALRRQA 251 (255)
T ss_pred HhcCceEEEeCHHHHHHHHHc------CCCceeeCCCCChHHHHHHHHhcc
Confidence 245789999999999999999 999888899999999999998763
No 16
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=99.62 E-value=1.1e-14 Score=125.84 Aligned_cols=119 Identities=18% Similarity=0.113 Sum_probs=100.0
Q ss_pred CCCCeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCC-chHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcC-
Q 026235 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPD-TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAG- 125 (241)
Q Consensus 48 l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~-~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~- 125 (241)
..|++||+.|+...++.+.+.|+++|+++..+++|++++... .+.+.+.+ .-+.+|+|+|||+++|++|++.+...+
T Consensus 116 ~~~~~vL~~rg~~~r~~l~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l-~~~~~d~i~f~S~~~~~~f~~~~~~~~~ 194 (240)
T PRK09189 116 APTARLLYLAGRPRAPVFEDRLAAAGIPFRVAECYDMLPVMYSPATLSAIL-GGAPFDAVLLYSRVAARRFFALMRLSIA 194 (240)
T ss_pred CCCCcEEEeccCcccchhHHHHHhCCCeeEEEEEEEeecCCCChHHHHHHH-hcCCCCEEEEeCHHHHHHHHHHHhhhcC
Confidence 468999999999999999999999999999999999987653 34455555 346899999999999999999886432
Q ss_pred ---CCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhh
Q 026235 126 ---TPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (241)
Q Consensus 126 ---~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~ 173 (241)
+.+++++|||+.|++++++. |.....+++.++.++|++.+..
T Consensus 195 ~~~l~~~~~v~Ig~~ta~al~~~------~~~~~~ia~~~t~~~l~~~l~~ 239 (240)
T PRK09189 195 PPADEKTRFLCLSARVAAALPAS------LRAQALIAAMPDEKSLLSLLSK 239 (240)
T ss_pred cccccccCeEEeCHHHHHHHhhc------cccceeecCCCCHHHHHHHhhh
Confidence 35788999999999999887 7655567899999999988753
No 17
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=99.62 E-value=1.3e-15 Score=130.18 Aligned_cols=116 Identities=23% Similarity=0.294 Sum_probs=98.7
Q ss_pred CCCCCeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhc--
Q 026235 47 SNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA-- 124 (241)
Q Consensus 47 ~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~-- 124 (241)
.+.+++||++|+...++.+.+.|+++|++|..+++|++.+......+.+.+. .+.+|+|+|||+++|+.|++.+.+.
T Consensus 114 ~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~l~-~~~~~~v~ftS~~~~~~~~~~~~~~~~ 192 (231)
T PF02602_consen 114 QLRGKRVLILRGEGGRPDLPEKLREAGIEVTEVIVYETPPEELSPELKEALD-RGEIDAVVFTSPSAVRAFLELLKKNGA 192 (231)
T ss_dssp CCTTEEEEEEESSSSCHHHHHHHHHTTEEEEEEECEEEEEHHHHHHHHHHHH-HTTTSEEEESSHHHHHHHHHHSSGHHH
T ss_pred hCCCCeEEEEcCCCccHHHHHHHHHCCCeEEEEEEeecccccchHHHHHHHH-cCCCCEEEECCHHHHHHHHHHhHhhhh
Confidence 4567899999999999999999999999999999999922222345555553 3789999999999999999988754
Q ss_pred CCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHH
Q 026235 125 GTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILAS 169 (241)
Q Consensus 125 ~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~ 169 (241)
.+.+.+++|||+.|+++++++ |++++.+|+.++.++|++
T Consensus 193 ~~~~~~~~~ig~~ta~~l~~~------g~~~~~va~~~~~~~lv~ 231 (231)
T PF02602_consen 193 LLKRVPIVAIGPRTAKALREL------GFKVDIVAERPTIEALVE 231 (231)
T ss_dssp HHTTSEEEESSHHHHHHHHHT------T-SCSEEESSSSHHHHHH
T ss_pred hhhCCEEEEECHHHHHHHHHc------CCCceEECCCCChhHhhC
Confidence 357899999999999999999 999999999999999985
No 18
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=99.60 E-value=1.4e-14 Score=126.13 Aligned_cols=118 Identities=24% Similarity=0.309 Sum_probs=104.5
Q ss_pred CCeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCCch-HHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCC--
Q 026235 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTD-RLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT-- 126 (241)
Q Consensus 50 g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~-~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~-- 126 (241)
|++|++.|+...++.+.+.|.+.|+++..+++|++++..... .+...+ ....+|+|+|||+.+|++|++.++..+.
T Consensus 123 ~~~vl~~~~~~~r~~l~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~~-~~~~~d~v~ftS~~~v~~~~~~~~~~~~~~ 201 (248)
T COG1587 123 GKRVLILRGNGGREVLEEKLEERGAEVREVEVYRTEPPPLDEATLIELL-KLGEVDAVVFTSSSAVRALLALAPESGIEF 201 (248)
T ss_pred CCeEEEEcCCCchHHHHHHHHhCCCEEEEEeeeeecCCCccHHHHHHHH-HhCCCCEEEEeCHHHHHHHHHHccccchhH
Confidence 799999999999999999999999999999999999876542 233344 5689999999999999999999887653
Q ss_pred -CCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhC
Q 026235 127 -PNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (241)
Q Consensus 127 -~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~ 174 (241)
.+++++|||+.|++.++++ |+++++.++.++.++|.+++...
T Consensus 202 ~~~~~v~~IG~~Ta~~l~~~------G~~~~~~~~~~~~~~l~~al~~~ 244 (248)
T COG1587 202 LERKRVASIGPRTAETLKEL------GITVDIAAEKPTLEALADALAKL 244 (248)
T ss_pred hhCceEEEecHHHHHHHHHc------CCcceecccccchHHHHHHHHHH
Confidence 4799999999999999999 99998999999999999998765
No 19
>KOG4132 consensus Uroporphyrinogen III synthase UROS/HEM4 [Coenzyme transport and metabolism]
Probab=99.55 E-value=8.8e-14 Score=117.11 Aligned_cols=123 Identities=15% Similarity=0.251 Sum_probs=110.1
Q ss_pred CCCCCeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCC-chHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcC
Q 026235 47 SNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPD-TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAG 125 (241)
Q Consensus 47 ~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~-~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~ 125 (241)
+......|++.+...++.+.+.|.+.|+.|..+.+|+++..++ ..++..+++.-+-.|||+|.||++|+...+++....
T Consensus 130 ~~~alPLLfpcGn~~rdil~kkL~~~G~~Vds~~VY~T~~hp~~~~~~~~alk~~~~~d~ivfFSPsgv~~~lq~f~~~~ 209 (260)
T KOG4132|consen 130 DKRALPLLFPCGNLRRDILPKKLHDKGIRVDSCEVYETREHPDGFKQFIHALKECGFIDWIVFFSPSGVKSSLQYFGDSN 209 (260)
T ss_pred CcccCceEEEcccchhHHHHHHHHhCCceeeEEEEEeeeecccHHHHHHHHHHhcCCcceEEEECcchHHHHHHHHHHhc
Confidence 3344559999999999999999999999999999999999887 467888887778999999999999999999998764
Q ss_pred --CCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCC
Q 026235 126 --TPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG 175 (241)
Q Consensus 126 --~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~ 175 (241)
+++.++++|||.|+++|++. |++++.+.+.++.+.|++.|....
T Consensus 210 ~s~~~~k~aaIGPtT~kaL~~~------g~~~~~vs~~P~pe~L~~~I~~~~ 255 (260)
T KOG4132|consen 210 RSGDHLKLAAIGPTTRKALEDL------GVKVDVVSPAPDPESLADAIELYQ 255 (260)
T ss_pred cchhheeEEEeCcchHHHHHHc------CCCcceecCCCCHHHHHHHHHhhh
Confidence 46899999999999999999 999999999999999999997653
No 20
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=99.54 E-value=1.3e-13 Score=121.36 Aligned_cols=121 Identities=12% Similarity=0.044 Sum_probs=102.9
Q ss_pred CCCCeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCCch-HHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhc--
Q 026235 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTD-RLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA-- 124 (241)
Q Consensus 48 l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~-~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~-- 124 (241)
..|++||+.|+..+++.+.+.|++.|+.|..+++|+.++....+ .+...+ .-...|+++|||++++++|++.+.+.
T Consensus 136 ~~g~~vLi~rg~~gr~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~l~-~~~~~d~i~ftS~sav~~f~~~l~~~~~ 214 (266)
T PRK08811 136 APLQAVGLITAPGGRGLLAPTLQQRGARILRADVYQRVPLRLRASTLAALS-RAAPRSVLALSSAEALTLILQQLPDALR 214 (266)
T ss_pred CCCCEEEEEeCCCcHHHHHHHHHHCCCEEeEEEEEeeeCCCCCHHHHHHHH-HhCCCCEEEEChHHHHHHHHHHhhhhHH
Confidence 36899999999999999999999999999999999988754333 333332 23679999999999999999987653
Q ss_pred -CCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCC
Q 026235 125 -GTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG 175 (241)
Q Consensus 125 -~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~ 175 (241)
.+.+++++|||+.|++++++. |+...++++.++.++|++++.+..
T Consensus 215 ~~l~~~~~v~is~rtA~~a~~~------G~~~v~vA~~~~~~~l~~a~~~~~ 260 (266)
T PRK08811 215 RALQQRPVVASSDRLLDAAHAA------GFIHVMRAAGPLPAQLAAAAAAIM 260 (266)
T ss_pred HHHhCCCEEEeCHHHHHHHHHc------CCCceeeCCCCCHHHHHHHHHhhc
Confidence 236788999999999999999 999988999999999999998764
No 21
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=99.28 E-value=4.7e-11 Score=117.09 Aligned_cols=118 Identities=14% Similarity=0.088 Sum_probs=95.3
Q ss_pred CCCCeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCC-Cc---hHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHh
Q 026235 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGP-DT---DRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE 123 (241)
Q Consensus 48 l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~-~~---~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~ 123 (241)
+.|++||++|+..+++.+.+.|++.|+.|..+++|+..... +. ..+.+.+. +.+|+|+|||+++|++|++.+.+
T Consensus 137 ~~g~rVLi~rG~~gr~~L~~~L~~~Ga~V~~v~vY~~~~~~~~~~~~~~~~~~l~--~~idav~fTS~s~v~~f~~la~~ 214 (656)
T PRK06975 137 LAGKRVLIVRGDGGREWLAERLREAGAEVELVEAYRRVVPEPSIGAWERVHALLS--GAPHAWLLTSSEAVRNLDELARA 214 (656)
T ss_pred CCCCEEEEEcCCCCcHHHHHHHHHCCCEEEEEeEEEeeCCCcchhHHHHHHHHHh--CCCcEEEECCHHHHHHHHHHHHh
Confidence 67899999999999999999999999999999999975332 22 23334442 46999999999999999997432
Q ss_pred c-------CCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhC
Q 026235 124 A-------GTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (241)
Q Consensus 124 ~-------~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~ 174 (241)
+ .+.+++++|||+.|+++++++ |+... .+..++.++++..+.++
T Consensus 215 ~l~~~~~~~l~~~~ivaIgprtA~~a~~~------G~~~i-~~a~~~~e~ll~ai~~~ 265 (656)
T PRK06975 215 HLNPAEIDALKHAPLVAPHARIAEQARAL------GFDRI-TLTGAGDERIVRAFLTW 265 (656)
T ss_pred hcCHHHHHHHhCCeEEEeCHHHHHHHHHc------CCCee-ecCCCChHHHHHHHHHH
Confidence 1 135789999999999999999 99964 45667889998888765
No 22
>PRK07168 bifunctional uroporphyrinogen-III methyltransferase/uroporphyrinogen-III synthase; Reviewed
Probab=98.27 E-value=4.9e-06 Score=78.97 Aligned_cols=85 Identities=14% Similarity=0.138 Sum_probs=63.0
Q ss_pred CeEEEeCCCCChHHHHHHHHHCCCc-EEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCC---
Q 026235 51 PKVVVTRERGKNGKLIKALAKHRID-CLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT--- 126 (241)
Q Consensus 51 ~~VLitR~~~~~~~l~~~L~~~G~~-v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~--- 126 (241)
++|+++|.. +|+. +.....|++....+. .....+.+ .-.|.|+|||+++|++|++.++..++
T Consensus 369 ~~vl~~~~~------------~g~~~~~~~~~y~~~~~~~~-~~~~~l~e-~~~d~iiFtS~ssV~~f~~~~~~~~~~~~ 434 (474)
T PRK07168 369 NRIAFIQEK------------IGAGSYMMTHKYTIDHRFDE-VHSRMLSE-FLWDSIVFEGRASIDTFLAEVKRLGFIDI 434 (474)
T ss_pred cceeecccC------------CCCceEEEEEEeeccccccc-hhhhHHhh-ccCceEEECCHHHHHHHHHHHHhhCchhh
Confidence 577777743 6777 888999984322111 11122212 22799999999999999999987765
Q ss_pred CCcEEEEeCHHHHHHHHHhhhccCCCCce
Q 026235 127 PNVRIGVVGAGTASIFEEVIQSSKCSLDV 155 (241)
Q Consensus 127 ~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~ 155 (241)
.+++++||||.|++++.++ |+..
T Consensus 435 ~~~~~~~iGp~t~~~a~~~------G~~~ 457 (474)
T PRK07168 435 VTLPFSYTDVPTLHYANKV------GFHN 457 (474)
T ss_pred ccCceEEeCHHHHHHHHHh------CCCc
Confidence 6899999999999999999 9864
No 23
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=95.94 E-value=0.44 Score=37.78 Aligned_cols=114 Identities=20% Similarity=0.213 Sum_probs=76.1
Q ss_pred CCCeEEEeCCCCCh-----HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCH-----HHHHHHH
Q 026235 49 SNPKVVVTRERGKN-----GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP-----EAGSVFL 118 (241)
Q Consensus 49 ~g~~VLitR~~~~~-----~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~-----~aV~~f~ 118 (241)
++++||+....... .-+...|+..|++|+++-.-. ..+++.+... -.+.|.|..++. ..++.+.
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~v-----p~e~i~~~a~-~~~~d~V~lS~~~~~~~~~~~~~~ 75 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMT-----SQEEFIDAAI-ETDADAILVSSLYGHGEIDCRGLR 75 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCC-----CHHHHHHHHH-HcCCCEEEEcCccccCHHHHHHHH
Confidence 46778887766543 345567899999999875432 1244444442 357888877663 3455566
Q ss_pred HHHHhcCCCCcEEEEeCHH---------HHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCC
Q 026235 119 EAWKEAGTPNVRIGVVGAG---------TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG 175 (241)
Q Consensus 119 ~~l~~~~~~~~~i~aIG~~---------Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~ 175 (241)
+.+.+.+.+++++++-|.. ..+.++++ |+...|.| ..+.+.+++.|.+..
T Consensus 76 ~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~------G~~~vf~~-~~~~~~i~~~l~~~~ 134 (137)
T PRK02261 76 EKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEM------GFDRVFPP-GTDPEEAIDDLKKDL 134 (137)
T ss_pred HHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHc------CCCEEECc-CCCHHHHHHHHHHHh
Confidence 6666666778888888864 22578888 99876655 458888888887653
No 24
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=95.21 E-value=0.52 Score=37.75 Aligned_cols=110 Identities=24% Similarity=0.383 Sum_probs=76.2
Q ss_pred CCCeEEEeCCC-----CChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHH-----HHHH
Q 026235 49 SNPKVVVTRER-----GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG-----SVFL 118 (241)
Q Consensus 49 ~g~~VLitR~~-----~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV-----~~f~ 118 (241)
...||++.... .+..-+.++|++.|++|++.++.++. .+.+..++ .++.|.|..+|-++- ..+.
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp----~e~v~aA~--~~dv~vIgvSsl~g~h~~l~~~lv 84 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTP----EEAVRAAV--EEDVDVIGVSSLDGGHLTLVPGLV 84 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCH----HHHHHHHH--hcCCCEEEEEeccchHHHHHHHHH
Confidence 45678877664 34677899999999999999998763 23445554 378899999887763 3345
Q ss_pred HHHHhcCCCCcEEEE---eCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHh
Q 026235 119 EAWKEAGTPNVRIGV---VGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASEL 171 (241)
Q Consensus 119 ~~l~~~~~~~~~i~a---IG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l 171 (241)
+.+.+.+..++.+++ |.+...+.|+++ |+.-.|.|. ...+..++.+
T Consensus 85 e~lre~G~~~i~v~~GGvip~~d~~~l~~~------G~~~if~pg-t~~~~~~~~v 133 (143)
T COG2185 85 EALREAGVEDILVVVGGVIPPGDYQELKEM------GVDRIFGPG-TPIEEALSDL 133 (143)
T ss_pred HHHHHhCCcceEEeecCccCchhHHHHHHh------CcceeeCCC-CCHHHHHHHH
Confidence 566667777777666 445556669999 999878775 3444444444
No 25
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=95.17 E-value=0.41 Score=42.63 Aligned_cols=177 Identities=12% Similarity=0.058 Sum_probs=101.2
Q ss_pred CCeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEee-CCC--chHHHHHHhcCCCccEEEEeCH----HH-HHHH----
Q 026235 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQ-GPD--TDRLSSVLNADTIFDWIIITSP----EA-GSVF---- 117 (241)
Q Consensus 50 g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~-~~~--~~~l~~~l~~l~~~d~IiFTS~----~a-V~~f---- 117 (241)
|++|.+..+..+.-.+.+.|.++|++|..+-+=+... ... ...+.+. .+.+.|+||+-=| .+ ++..
T Consensus 1 ~~~~~v~ggd~r~~~~~~~l~~~g~~v~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~p~~~~~~~~~i~~~~~~~ 78 (287)
T TIGR02853 1 GIHIAVIGGDARQLELIRKLEELDAKISLIGFDQLEDGFTGAVKCELLEL--DLTTLDVVILPVPGTSHDGKVATVFSNE 78 (287)
T ss_pred CcEEEEEcccHHHHHHHHHHHHCCCEEEEEeccccccccccceeecchhh--hhccCCEEEECCccccCCceEecccccC
Confidence 6789999998888899999999999977653311100 000 1111111 2467888886543 21 1110
Q ss_pred -----HHHHHhcCCCCcEEEEeCH--HH-HHHHHHhhhccCCCCcee------ec---CCCCCHHHHHHHhhhC---CCC
Q 026235 118 -----LEAWKEAGTPNVRIGVVGA--GT-ASIFEEVIQSSKCSLDVA------FS---PSKATGKILASELPKN---GKK 177 (241)
Q Consensus 118 -----~~~l~~~~~~~~~i~aIG~--~T-a~~L~~~~~~~~~Gi~~~------~~---p~~~t~e~L~~~l~~~---~~~ 177 (241)
.+.+... +...+++.|- .- .+++++. |+.+. -+ ....++|+-+..+.+. ...
T Consensus 79 ~~~l~~~~l~~~--~~~~~~~~G~~~~~l~~~a~~~------gi~v~~~~~~~~va~~n~~~~Ae~ai~~al~~~~~~l~ 150 (287)
T TIGR02853 79 KVVLTPELLEST--KGHCTIYVGISNPYLEQLAADA------GVKLIELFERDDVAIYNSIPTAEGAIMMAIEHTDFTIH 150 (287)
T ss_pred CccccHHHHHhc--CCCCEEEEecCCHHHHHHHHHC------CCeEEEEEeccceEEEccHhHHHHHHHHHHHhcCCCCC
Confidence 1122221 2233344443 22 3377788 99875 11 2235666666554432 235
Q ss_pred ccEEEEEccCCCchhHHHHHHhCCCeeeEeeeeeeecCCC-----------ChHHHHHHcCCCCEEEEECCcc
Q 026235 178 KCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHH-----------VDQTVLKQALSIPVVAVASPSA 239 (241)
Q Consensus 178 ~~~iL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~-----------~~~~~~~~l~~id~IvFtSps~ 239 (241)
+++++++-.......+...|...|++ +.+|.+.+... ...++.+.+.+.|+|+.+.|..
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G~~---V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~ 220 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALGAR---VFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPAL 220 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCCCE---EEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCChH
Confidence 78999997766667899999999975 44555543210 0112233347899999998754
No 26
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=94.65 E-value=1.6 Score=34.31 Aligned_cols=110 Identities=17% Similarity=0.182 Sum_probs=72.4
Q ss_pred CeEEEeCCCC-----ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHH-----HHHHHHHH
Q 026235 51 PKVVVTRERG-----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE-----AGSVFLEA 120 (241)
Q Consensus 51 ~~VLitR~~~-----~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~-----aV~~f~~~ 120 (241)
.||++..... +..-....|+..|++|+........ .+.+..+. -.+.|.|+.+|-. .+..+.+.
T Consensus 3 ~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~----e~~v~aa~--e~~adii~iSsl~~~~~~~~~~~~~~ 76 (132)
T TIGR00640 3 PRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQTP----EEIARQAV--EADVHVVGVSSLAGGHLTLVPALRKE 76 (132)
T ss_pred CEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCCH----HHHHHHHH--HcCCCEEEEcCchhhhHHHHHHHHHH
Confidence 4566655443 3455667889999999998877431 12233443 3689999998866 35555666
Q ss_pred HHhcCCCCcEEEEeC---HHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhh
Q 026235 121 WKEAGTPNVRIGVVG---AGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (241)
Q Consensus 121 l~~~~~~~~~i~aIG---~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~ 173 (241)
+++.+.+++++++=| +.-.+.+++. |+.-.+.| ..+.+..++.+.+
T Consensus 77 L~~~g~~~i~vivGG~~~~~~~~~l~~~------Gvd~~~~~-gt~~~~i~~~l~~ 125 (132)
T TIGR00640 77 LDKLGRPDILVVVGGVIPPQDFDELKEM------GVAEIFGP-GTPIPESAIFLLK 125 (132)
T ss_pred HHhcCCCCCEEEEeCCCChHhHHHHHHC------CCCEEECC-CCCHHHHHHHHHH
Confidence 666666566766643 3346678888 99875554 5688888887765
No 27
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=94.35 E-value=1.6 Score=38.99 Aligned_cols=173 Identities=14% Similarity=0.125 Sum_probs=98.8
Q ss_pred CCeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeC-CC---chHHHHHHhcCCCccEEEEeCHH--------HH---
Q 026235 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQG-PD---TDRLSSVLNADTIFDWIIITSPE--------AG--- 114 (241)
Q Consensus 50 g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~-~~---~~~l~~~l~~l~~~d~IiFTS~~--------aV--- 114 (241)
|+++.+..+..+.-++.+.|.++|++|...-+-.-.+. .. .....+ .+.+.|.|++.-|- +.
T Consensus 2 ~~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~~~~~~g~~~~~~~~~---~~~~ad~ii~~~p~~~~~~~i~~~~~~ 78 (296)
T PRK08306 2 GKHIAVIGGDARQLELIRKLVELGAKVSLVGFDQLDHGFTGATKSSSLEE---ALSDVDVIILPVPGTNDEGNVDTVFSN 78 (296)
T ss_pred CcEEEEEcCcHHHHHHHHHHHHCCCEEEEEeccccccccCCceeeccHHH---HhccCCEEEECCccccCCceeeccccc
Confidence 78899999998888999999999999997322111110 00 001122 24788999987332 11
Q ss_pred ------HHHHHHHHhcCCCCc-EE-EEeCHHHHHHHHHhhhccCCCCceee-cC--------CCCCHHHH-HHHhhhC--
Q 026235 115 ------SVFLEAWKEAGTPNV-RI-GVVGAGTASIFEEVIQSSKCSLDVAF-SP--------SKATGKIL-ASELPKN-- 174 (241)
Q Consensus 115 ------~~f~~~l~~~~~~~~-~i-~aIG~~Ta~~L~~~~~~~~~Gi~~~~-~p--------~~~t~e~L-~~~l~~~-- 174 (241)
+.+++.++ ++. -+ .++-+...+.+++. |+.+.- .+ ...+.++- ...+...
T Consensus 79 ~~~~~~~~~l~~l~----~~~~v~~G~~~~~~~~~~~~~------gi~~~~~~~~~~~~~~ns~~~aegav~~a~~~~~~ 148 (296)
T PRK08306 79 EKLVLTEELLELTP----EHCTIFSGIANPYLKELAKET------NRKLVELFERDDVAILNSIPTAEGAIMMAIEHTPI 148 (296)
T ss_pred cCCcchHHHHHhcC----CCCEEEEecCCHHHHHHHHHC------CCeEEEEeccchhhhhccHhHHHHHHHHHHHhCCC
Confidence 22333332 222 22 22335666667777 998742 22 12344553 3334332
Q ss_pred CCCccEEEEEccCCCchhHHHHHHhCCCeeeEeeeeeeecCCC-----------ChHHHHHHcCCCCEEEEECCc
Q 026235 175 GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHH-----------VDQTVLKQALSIPVVAVASPS 238 (241)
Q Consensus 175 ~~~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~-----------~~~~~~~~l~~id~IvFtSps 238 (241)
...+++++++-.......+...|+..|++ +.+|.+.+... ...++.+.+.+.|+|+-|.|.
T Consensus 149 ~l~g~kvlViG~G~iG~~~a~~L~~~Ga~---V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~ 220 (296)
T PRK08306 149 TIHGSNVLVLGFGRTGMTLARTLKALGAN---VTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPA 220 (296)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCE---EEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCCh
Confidence 23478999986655556788899999975 45554443210 011223334789999988774
No 28
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=94.20 E-value=0.44 Score=43.12 Aligned_cols=156 Identities=10% Similarity=0.042 Sum_probs=90.1
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHHHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~L 142 (241)
.-+.+.++++|+.+...+.-.. + .......+.+ .-..+|.||+.+...-+.+.+.+.+. +++++.+|....
T Consensus 78 ~gi~~~~~~~gy~~~l~~~~~~-~-~~e~~~~~~l-~~~~vdGiIi~~~~~~~~~~~~l~~~---~~P~V~i~~~~~--- 148 (333)
T COG1609 78 KGIEEAAREAGYSLLLANTDDD-P-EKEREYLETL-LQKRVDGLILLGERPNDSLLELLAAA---GIPVVVIDRSPP--- 148 (333)
T ss_pred HHHHHHHHHcCCEEEEECCCCC-H-HHHHHHHHHH-HHcCCCEEEEecCCCCHHHHHHHHhc---CCCEEEEeCCCc---
Confidence 4456678889999887766541 1 1112222333 23789999999855555555555543 689999997654
Q ss_pred HHhhhccCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEccCCCc-------hhHHHHHHhCCCee-eEeeeeeeec
Q 026235 143 EEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEV-VRLNTYTTEP 214 (241)
Q Consensus 143 ~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~~~~~~iL~~~g~~~~-------~~L~~~L~~~G~~V-~~~~vY~~~~ 214 (241)
.. ++.....-...-+..+++.|.+.. .+++.++.|.... .-..+.|++.|..+ ..........
T Consensus 149 -~~------~~~~V~~Dn~~~~~~a~~~L~~~G--~~~i~~i~~~~~~~~~~~R~~Gf~~al~~~~~~~~~~~i~~~~~~ 219 (333)
T COG1609 149 -GL------GVPSVGIDNFAGAYLATEHLIELG--HRRIAFIGGPLDSSASRERLEGYRAALREAGLPINPEWIVEGDFS 219 (333)
T ss_pred -cC------CCCEEEEChHHHHHHHHHHHHHCC--CceEEEEeCCCccccHhHHHHHHHHHHHHCCCCCCcceEEecCCC
Confidence 33 444433333344566677777653 4789999887311 34678889999887 3333321111
Q ss_pred CCCChHHHHHHc---CC-CCEEEEEC
Q 026235 215 VHHVDQTVLKQA---LS-IPVVAVAS 236 (241)
Q Consensus 215 ~~~~~~~~~~~l---~~-id~IvFtS 236 (241)
.......+.+.+ .. +++|+.++
T Consensus 220 ~~~g~~~~~~ll~~~~~~ptAif~~n 245 (333)
T COG1609 220 EESGYEAAERLLARGEPRPTAIFCAN 245 (333)
T ss_pred hHHHHHHHHHHHhcCCCCCcEEEEcC
Confidence 111122222233 23 78887665
No 29
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=94.07 E-value=1.3 Score=37.51 Aligned_cols=151 Identities=13% Similarity=0.073 Sum_probs=81.8
Q ss_pred HHHHHHHHCCCcEEEeceEEEeeCCCch----HHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHH
Q 026235 64 KLIKALAKHRIDCLELPLIQHAQGPDTD----RLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTA 139 (241)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~----~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta 139 (241)
.+.+.++++|+.+...+. . .+.+ .+...+ -..+|+||+.+..........+.. .++++++++...
T Consensus 20 ~~~~~~~~~g~~~~~~~~---~--~~~~~~~~~i~~l~--~~~vdgiii~~~~~~~~~~~~l~~---~~ipvV~~~~~~- 88 (268)
T cd06298 20 GIDDIATMYKYNIILSNS---D--NDKEKELKVLNNLL--AKQVDGIIFMGGKISEEHREEFKR---SPTPVVLAGSVD- 88 (268)
T ss_pred HHHHHHHHcCCeEEEEeC---C--CCHHHHHHHHHHHH--HhcCCEEEEeCCCCcHHHHHHHhc---CCCCEEEEcccc-
Confidence 455677888988776532 1 1222 223322 268999999865433334444433 468889988532
Q ss_pred HHHHHhhhccCCCCceeecCCCC-CHHHHHHHhhhCCCCccEEEEEccCCC-c-------hhHHHHHHhCCCeeeEeeee
Q 026235 140 SIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKA-S-------NEIEEGLSNRGFEVVRLNTY 210 (241)
Q Consensus 140 ~~L~~~~~~~~~Gi~~~~~p~~~-t~e~L~~~l~~~~~~~~~iL~~~g~~~-~-------~~L~~~L~~~G~~V~~~~vY 210 (241)
... ++.. +.++.+ .+..+++.|.+. ..++++++.+... . .-+.+.++++|+++....++
T Consensus 89 ---~~~------~~~~-v~~d~~~~~~~~~~~l~~~--g~~~i~~l~~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~ 156 (268)
T cd06298 89 ---EDN------ELPS-VNIDYKKAAFEATELLIKN--GHKKIAFISGPLEDSINGDERLAGYKEALSEANIEFDESLIF 156 (268)
T ss_pred ---CCC------CCCE-EEECcHHHHHHHHHHHHHc--CCceEEEEeCCcccccchhHHHHHHHHHHHHcCCCCCHHHeE
Confidence 112 2222 333333 345567777664 3478999987654 2 23567788888776544444
Q ss_pred eeecCCCChHHHH-HHc-C-CCCEEEEECC
Q 026235 211 TTEPVHHVDQTVL-KQA-L-SIPVVAVASP 237 (241)
Q Consensus 211 ~~~~~~~~~~~~~-~~l-~-~id~IvFtSp 237 (241)
..........+.. +.+ . .+++|+.++.
T Consensus 157 ~~~~~~~~~~~~~~~~l~~~~~~ai~~~~d 186 (268)
T cd06298 157 EGDYTYESGYELAEELLEDGKPTAAFVTDD 186 (268)
T ss_pred eCCCChhHHHHHHHHHhcCCCCCEEEEcCc
Confidence 3322222122222 223 2 2788887664
No 30
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=94.06 E-value=0.93 Score=38.73 Aligned_cols=153 Identities=16% Similarity=0.159 Sum_probs=80.5
Q ss_pred HHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHHHHHH
Q 026235 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEE 144 (241)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~L~~ 144 (241)
+.+.++++|+++.....-. .....+.+.+. -..+|+||+++...-...++.+.+ .+++++++|.....
T Consensus 32 i~~~~~~~g~~~~v~~~~~----~~~~~~~~~l~-~~~~dgiii~~~~~~~~~~~~~~~---~~ipvV~~~~~~~~---- 99 (275)
T cd06295 32 IADALAERGYDLLLSFVSS----PDRDWLARYLA-SGRADGVILIGQHDQDPLPERLAE---TGLPFVVWGRPLPG---- 99 (275)
T ss_pred HHHHHHHcCCEEEEEeCCc----hhHHHHHHHHH-hCCCCEEEEeCCCCChHHHHHHHh---CCCCEEEECCccCC----
Confidence 5667788898877654311 11223344442 267999998765432333343333 46889999864211
Q ss_pred hhhccCCCCceeecCCCC-CHHHHHHHhhhCCCCccEEEEEccCCCc-------hhHHHHHHhCCCeeeEeeeeeeecCC
Q 026235 145 VIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTEPVH 216 (241)
Q Consensus 145 ~~~~~~~Gi~~~~~p~~~-t~e~L~~~l~~~~~~~~~iL~~~g~~~~-------~~L~~~L~~~G~~V~~~~vY~~~~~~ 216 (241)
. .+.. +.++.+ .++.+++.|.+.. .++++++.+.... .-+.+.|++.|..+....++......
T Consensus 100 ~------~~~~-V~~d~~~~g~~~a~~l~~~g--~~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~ 170 (275)
T cd06295 100 Q------PYCY-VGSDNVGGGRLATEHLLARG--RRRIAFLGGPQDMPEGEERLEGYREALAEAGLPLDPRLVAPGDFTE 170 (275)
T ss_pred C------CCCE-EEECcHHHHHHHHHHHHHCC--CCeEEEEcCCCCcchhHHHHHHHHHHHHHcCCCCChhhEEeccCCH
Confidence 2 2222 333333 3455566666543 4689988775431 23566777777655443333222111
Q ss_pred CChH-HHHHHc---CCCCEEEEECCc
Q 026235 217 HVDQ-TVLKQA---LSIPVVAVASPS 238 (241)
Q Consensus 217 ~~~~-~~~~~l---~~id~IvFtSps 238 (241)
.... .+.+.+ ..+++|+.++..
T Consensus 171 ~~~~~~~~~~l~~~~~~~ai~~~~~~ 196 (275)
T cd06295 171 ESGRAAMRALLERGPDFDAVFAASDL 196 (275)
T ss_pred HHHHHHHHHHHhCCCCCCEEEECCcH
Confidence 1111 222223 357888877643
No 31
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=93.92 E-value=1.1 Score=37.83 Aligned_cols=154 Identities=10% Similarity=0.021 Sum_probs=79.2
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHh--cCCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN--ADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~--~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~ 140 (241)
..+.+.++++|+.+...+.. .+.+...+.++ .-..+|.||+++.......++.+.+ .+++++++|....
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~-----~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~l~~---~~ipvV~~~~~~~- 89 (265)
T cd06299 19 TAIQDAASAAGYSTIIGNSD-----ENPETENRYLDNLLSQRVDGIIVVPHEQSAEQLEDLLK---RGIPVVFVDREIT- 89 (265)
T ss_pred HHHHHHHHHcCCEEEEEeCC-----CCHHHHHHHHHHHHhcCCCEEEEcCCCCChHHHHHHHh---CCCCEEEEecccC-
Confidence 34566778889888866432 12211112221 1268999999875433323344433 4688999986432
Q ss_pred HHHHhhhccCCCCceeecCCCCC-HHHHHHHhhhCCCCccEEEEEccCCCc-------hhHHHHHHhCCCeeeEeeeeee
Q 026235 141 IFEEVIQSSKCSLDVAFSPSKAT-GKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTT 212 (241)
Q Consensus 141 ~L~~~~~~~~~Gi~~~~~p~~~t-~e~L~~~l~~~~~~~~~iL~~~g~~~~-------~~L~~~L~~~G~~V~~~~vY~~ 212 (241)
.. ++.. +..+... ...+++.|.+. ..++|+++.+.... .-+.+.++++|.++.....+..
T Consensus 90 ---~~------~~~~-v~~d~~~~~~~~~~~l~~~--g~~~I~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~ 157 (265)
T cd06299 90 ---GS------PIPF-VTSDPQPGMTEAVSLLVAL--GHKKIGYISGPQDTSTGRERLEAFRQACASLGLEVNEDLVVLG 157 (265)
T ss_pred ---CC------CCCE-EEECcHHHHHHHHHHHHHc--CCCcEEEEeCCCCcccHHHHHHHHHHHHHHCCCCCChHhEEec
Confidence 22 3322 2233332 23344555544 24689988775533 2466778888865543333322
Q ss_pred ecCCCChHHHHHH-cC-CCCEEEEECC
Q 026235 213 EPVHHVDQTVLKQ-AL-SIPVVAVASP 237 (241)
Q Consensus 213 ~~~~~~~~~~~~~-l~-~id~IvFtSp 237 (241)
........+..+. +. .+|+|+-++.
T Consensus 158 ~~~~~~~~~~~~~~l~~~~~av~~~~d 184 (265)
T cd06299 158 GYSQESGYAGATKLLDQGATAIIAGDS 184 (265)
T ss_pred CcchHHHHHHHHHHHcCCCCEEEEcCc
Confidence 2221112222222 32 3788776654
No 32
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=93.90 E-value=1.5 Score=34.48 Aligned_cols=97 Identities=21% Similarity=0.284 Sum_probs=66.4
Q ss_pred hHHHHHHHHHCCCcEEEeceEEEeeCCCchH-HHHHHhcCCCccEEEEeCHH-----HHHHHHHHHHhcCCCCcEEEEeC
Q 026235 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDR-LSSVLNADTIFDWIIITSPE-----AGSVFLEAWKEAGTPNVRIGVVG 135 (241)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~-l~~~l~~l~~~d~IiFTS~~-----aV~~f~~~l~~~~~~~~~i~aIG 135 (241)
..-+...|+.+|++|+.+..-.. .++ ++.+. ..+.|.|..+|-+ ..+.+.+.+.+.++.++++++=|
T Consensus 16 kniv~~~L~~~GfeVidLG~~v~-----~e~~v~aa~--~~~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~vivGG 88 (128)
T cd02072 16 NKILDHAFTEAGFNVVNLGVLSP-----QEEFIDAAI--ETDADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLYVGG 88 (128)
T ss_pred HHHHHHHHHHCCCEEEECCCCCC-----HHHHHHHHH--HcCCCEEEEeccccCCHHHHHHHHHHHHHCCCCCCeEEEEC
Confidence 45567789999999998876532 233 33333 2578888877633 35666677777777778888766
Q ss_pred HH---------HHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhh
Q 026235 136 AG---------TASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (241)
Q Consensus 136 ~~---------Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~ 172 (241)
.. ..+.|+++ |+...|.| ..+.+.+++.|.
T Consensus 89 ~~~i~~~d~~~~~~~L~~~------Gv~~vf~p-gt~~~~i~~~l~ 127 (128)
T cd02072 89 NLVVGKQDFEDVEKRFKEM------GFDRVFAP-GTPPEEAIADLK 127 (128)
T ss_pred CCCCChhhhHHHHHHHHHc------CCCEEECc-CCCHHHHHHHHh
Confidence 52 23559998 99876665 457788887764
No 33
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=93.77 E-value=2.6 Score=33.42 Aligned_cols=111 Identities=19% Similarity=0.263 Sum_probs=71.0
Q ss_pred CeEEEeCCCC-----ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHH-----HHHHHHH
Q 026235 51 PKVVVTRERG-----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA-----GSVFLEA 120 (241)
Q Consensus 51 ~~VLitR~~~-----~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~a-----V~~f~~~ 120 (241)
++|++..... +..-+...|+++|++|+.+..-.. .+++-+... ..+.|.|..+|-++ .+.+.+.
T Consensus 2 ~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~-----~e~~v~aa~-~~~adiVglS~l~~~~~~~~~~~~~~ 75 (134)
T TIGR01501 2 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSP-----QEEFIKAAI-ETKADAILVSSLYGHGEIDCKGLRQK 75 (134)
T ss_pred CeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCC-----HHHHHHHHH-HcCCCEEEEecccccCHHHHHHHHHH
Confidence 3566555443 245567789999999998876532 233333332 25788888777443 4555667
Q ss_pred HHhcCCCCcEEEEeCH-----H-H---HHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhC
Q 026235 121 WKEAGTPNVRIGVVGA-----G-T---ASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (241)
Q Consensus 121 l~~~~~~~~~i~aIG~-----~-T---a~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~ 174 (241)
+++.++.+.++++=|. . . .+.|++. |+...|.|. ...+.+++.|.+.
T Consensus 76 l~~~gl~~~~vivGG~~vi~~~d~~~~~~~l~~~------Gv~~vF~pg-t~~~~iv~~l~~~ 131 (134)
T TIGR01501 76 CDEAGLEGILLYVGGNLVVGKQDFPDVEKRFKEM------GFDRVFAPG-TPPEVVIADLKKD 131 (134)
T ss_pred HHHCCCCCCEEEecCCcCcChhhhHHHHHHHHHc------CCCEEECcC-CCHHHHHHHHHHH
Confidence 7777777777655441 1 1 2358998 998767664 5778888888653
No 34
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=92.95 E-value=1.3 Score=37.53 Aligned_cols=153 Identities=12% Similarity=0.074 Sum_probs=80.8
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCch----HHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTD----RLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGT 138 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~----~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~T 138 (241)
..+.+.++++|+.+.... .. .+.+ .++..+ . ..+|+||+++.......+..+.+ .+++++++|...
T Consensus 19 ~~i~~~~~~~g~~~~~~~---~~--~~~~~~~~~~~~l~-~-~~vdgiii~~~~~~~~~~~~l~~---~~iPvv~~~~~~ 88 (268)
T cd06273 19 QAFQETLAAHGYTLLVAS---SG--YDLDREYAQARKLL-E-RGVDGLALIGLDHSPALLDLLAR---RGVPYVATWNYS 88 (268)
T ss_pred HHHHHHHHHCCCEEEEec---CC--CCHHHHHHHHHHHH-h-cCCCEEEEeCCCCCHHHHHHHHh---CCCCEEEEcCCC
Confidence 456677888898877521 11 1222 122222 2 47899999876544444444433 358888888532
Q ss_pred HHHHHHhhhccCCCCceeecCCCC-CHHHHHHHhhhCCCCccEEEEEccCCC--------chhHHHHHHhCCCeeeEeee
Q 026235 139 ASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKA--------SNEIEEGLSNRGFEVVRLNT 209 (241)
Q Consensus 139 a~~L~~~~~~~~~Gi~~~~~p~~~-t~e~L~~~l~~~~~~~~~iL~~~g~~~--------~~~L~~~L~~~G~~V~~~~v 209 (241)
. .. .+.. +..+.+ .+..+++.|.+. ..+++.++.+... ..-+.+.|+++|+++....+
T Consensus 89 ~----~~------~~~~-v~~d~~~~~~~~~~~l~~~--g~~~i~~i~~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~~~ 155 (268)
T cd06273 89 P----DS------PYPC-VGFDNREAGRLAARHLIAL--GHRRIAMIFGPTQGNDRARARRAGVRAALAEAGLELPELWQ 155 (268)
T ss_pred C----CC------CCCE-EEeChHHHHHHHHHHHHHC--CCCeEEEEeccccCCccHHHHHHHHHHHHHHcCCCCCHHHe
Confidence 1 12 2221 233322 345566667664 3468988875431 13356788888877655445
Q ss_pred eeeecCCCCh-HHHHHHc---CCCCEEEEECCc
Q 026235 210 YTTEPVHHVD-QTVLKQA---LSIPVVAVASPS 238 (241)
Q Consensus 210 Y~~~~~~~~~-~~~~~~l---~~id~IvFtSps 238 (241)
+......... ..+.+.+ ..+|+|+.++..
T Consensus 156 ~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~~~ 188 (268)
T cd06273 156 VEAPYSIADGRAALRQLLEQPPRPTAVICGNDV 188 (268)
T ss_pred eeCCCcHHHHHHHHHHHHcCCCCCCEEEEcChH
Confidence 4332222111 1222223 358888877643
No 35
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=92.84 E-value=0.31 Score=42.86 Aligned_cols=155 Identities=12% Similarity=0.122 Sum_probs=87.4
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHH-HHHHHHHHhcCCCCcEEEEeCHHHHHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG-SVFLEAWKEAGTPNVRIGVVGAGTASI 141 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV-~~f~~~l~~~~~~~~~i~aIG~~Ta~~ 141 (241)
..+.+.++++|+.+..+. +....+.++..+.+. -..+|+||++|...= ..+....+ .+.+++.+|......
T Consensus 21 ~gIe~~a~~~Gy~l~l~~---t~~~~~~e~~i~~l~-~~~vDGiI~~s~~~~~~~l~~~~~----~~iPvV~~~~~~~~~ 92 (279)
T PF00532_consen 21 RGIEQEAREHGYQLLLCN---TGDDEEKEEYIELLL-QRRVDGIILASSENDDEELRRLIK----SGIPVVLIDRYIDNP 92 (279)
T ss_dssp HHHHHHHHHTTCEEEEEE---ETTTHHHHHHHHHHH-HTTSSEEEEESSSCTCHHHHHHHH----TTSEEEEESS-SCTT
T ss_pred HHHHHHHHHcCCEEEEec---CCCchHHHHHHHHHH-hcCCCEEEEecccCChHHHHHHHH----cCCCEEEEEeccCCc
Confidence 345667888999886543 221111112222221 278999999987554 34333332 268999999863222
Q ss_pred HHHhhhccCCCCceeecCCCCCHHHHHHHhhhCCCCccE-EEEEccCCCch-------hHHHHHHhCCCeeeEeeeeeee
Q 026235 142 FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCT-VLYPASAKASN-------EIEEGLSNRGFEVVRLNTYTTE 213 (241)
Q Consensus 142 L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~~~~~~-iL~~~g~~~~~-------~L~~~L~~~G~~V~~~~vY~~~ 213 (241)
. ++.....-....+..+.+.|.+.. .++ |+++.+..... -..+.|++.|..+.+..++...
T Consensus 93 ---~------~~~~V~~D~~~a~~~a~~~Li~~G--h~~~I~~i~~~~~~~~~~~R~~Gy~~Al~~~Gl~~~~~~i~~~~ 161 (279)
T PF00532_consen 93 ---E------GVPSVYIDNYEAGYEATEYLIKKG--HRRPIAFIGGPEDSSTSRERLQGYRDALKEAGLPIDEEWIFEGD 161 (279)
T ss_dssp ---C------TSCEEEEEHHHHHHHHHHHHHHTT--CCSTEEEEEESTTTHHHHHHHHHHHHHHHHTTSCEEEEEEEESS
T ss_pred ---c------cCCEEEEcchHHHHHHHHHHHhcc--cCCeEEEEecCcchHHHHHHHHHHHHHHHHcCCCCCcccccccC
Confidence 3 555433322223456677777664 367 89998865432 3568889999988887776553
Q ss_pred cCCCChHHHHHHc----CCCCEEEEEC
Q 026235 214 PVHHVDQTVLKQA----LSIPVVAVAS 236 (241)
Q Consensus 214 ~~~~~~~~~~~~l----~~id~IvFtS 236 (241)
.......+..+.+ ..+|+|+.++
T Consensus 162 ~~~~~g~~~~~~ll~~~p~idai~~~n 188 (279)
T PF00532_consen 162 FDYESGYEAARELLESHPDIDAIFCAN 188 (279)
T ss_dssp SSHHHHHHHHHHHHHTSTT-SEEEESS
T ss_pred CCHHHHHHHHHHHHhhCCCCEEEEEeC
Confidence 3221112333332 3466877665
No 36
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=92.60 E-value=1.2 Score=37.53 Aligned_cols=155 Identities=12% Similarity=0.080 Sum_probs=80.6
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCC-chHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPD-TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~-~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~ 141 (241)
..+.+.++++|+++.......- .+ .+.+.+.+. -..+|+||+++.+.-....+.+.+ .+++++++|....
T Consensus 23 ~~i~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~-~~~vdgiii~~~~~~~~~~~~~~~---~~ipvV~~~~~~~-- 93 (268)
T cd06271 23 SGLSEALAEHGYDLVLLPVDPD---EDPLEVYRRLVE-SGLVDGVIISRTRPDDPRVALLLE---RGFPFVTHGRTEL-- 93 (268)
T ss_pred HHHHHHHHHCCceEEEecCCCc---HHHHHHHHHHHH-cCCCCEEEEecCCCCChHHHHHHh---cCCCEEEECCcCC--
Confidence 4556678888988877654321 11 123344442 257999999875422222333333 4578888875421
Q ss_pred HHHhhhccCCCCceeecCCCC-CHHHHHHHhhhCCCCccEEEEEccCCCc-------hhHHHHHHhCCCeeeEeeeeeee
Q 026235 142 FEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTE 213 (241)
Q Consensus 142 L~~~~~~~~~Gi~~~~~p~~~-t~e~L~~~l~~~~~~~~~iL~~~g~~~~-------~~L~~~L~~~G~~V~~~~vY~~~ 213 (241)
.. .+.. +..+.+ ....+++.+.+.. .++++++.+.... .-+.+.++++|..+....++...
T Consensus 94 --~~------~~~~-V~~d~~~~~~~a~~~l~~~g--~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~ 162 (268)
T cd06271 94 --GD------PHPW-VDFDNEAAAYQAVRRLIALG--HRRIALLNPPEDLTFAQHRRAGYRRALAEAGLPLDPALIVSGD 162 (268)
T ss_pred --CC------CCCe-EeeCcHHHHHHHHHHHHHcC--CCcEEEecCccccchHHHHHHHHHHHHHHhCCCCCCceEEeCC
Confidence 12 3221 333333 3355566666543 4688888765432 23566777787765443344332
Q ss_pred cCCCChHHHHHH-c---CCCCEEEEECC
Q 026235 214 PVHHVDQTVLKQ-A---LSIPVVAVASP 237 (241)
Q Consensus 214 ~~~~~~~~~~~~-l---~~id~IvFtSp 237 (241)
.......+..+. + ..+|+|+..+.
T Consensus 163 ~~~~~~~~~~~~~l~~~~~~~ai~~~~d 190 (268)
T cd06271 163 MTEEGGYAAAAELLALPDRPTAIVCSSE 190 (268)
T ss_pred CChHHHHHHHHHHHhCCCCCCEEEEcCc
Confidence 221111122222 2 34788877664
No 37
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=92.50 E-value=1.5 Score=37.01 Aligned_cols=155 Identities=12% Similarity=0.050 Sum_probs=78.9
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCc-hHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDT-DRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~-~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~ 141 (241)
..+.+.++++|+++...+... .. ... ..++..+ ...+|+||+++...-..+...+.. .++++++++...
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~-~~-~~~~~~~~~l~--~~~vdgiii~~~~~~~~~~~~~~~---~~ipvv~~~~~~--- 88 (268)
T cd01575 19 QGISDVLEAAGYQLLLGNTGY-SP-EREEELLRTLL--SRRPAGLILTGLEHTERTRQLLRA---AGIPVVEIMDLP--- 88 (268)
T ss_pred HHHHHHHHHcCCEEEEecCCC-Cc-hhHHHHHHHHH--HcCCCEEEEeCCCCCHHHHHHHHh---cCCCEEEEecCC---
Confidence 345567788898887655321 11 111 1233332 257999999876533334444433 357888887532
Q ss_pred HHHhhhccCCCCceeecCC-CCCHHHHHHHhhhCCCCccEEEEEccCCC-------chhHHHHHHhCCCeeeEeeeeeee
Q 026235 142 FEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTE 213 (241)
Q Consensus 142 L~~~~~~~~~Gi~~~~~p~-~~t~e~L~~~l~~~~~~~~~iL~~~g~~~-------~~~L~~~L~~~G~~V~~~~vY~~~ 213 (241)
... ... .+..+ ...+..+++.|.+.. .+++.++.+... ..-+.+.|++.|..+....++...
T Consensus 89 -~~~------~~~-~v~~d~~~~~~~~~~~l~~~g--~~~i~~i~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~~~~~~~ 158 (268)
T cd01575 89 -PDP------IDM-AVGFSHAEAGRAMARHLLARG--YRRIGFLGARMDDTRAQQRLEGFRAALRAAGLDPPLVVTTPEP 158 (268)
T ss_pred -CCC------CCC-eEEeCcHHHHHHHHHHHHHCC--CCcEEEecCCCCcccHHHHHHHHHHHHHHcCCCCCceeEeccC
Confidence 111 111 12223 233455666666553 468888877643 123566788887654433332221
Q ss_pred cCCCChHHHH-HHc---CCCCEEEEECC
Q 026235 214 PVHHVDQTVL-KQA---LSIPVVAVASP 237 (241)
Q Consensus 214 ~~~~~~~~~~-~~l---~~id~IvFtSp 237 (241)
.......+.. +.+ ..+++|+..+.
T Consensus 159 ~~~~~~~~~~~~~l~~~~~~~ai~~~~d 186 (268)
T cd01575 159 SSFALGRELLAELLARWPDLDAVFCSND 186 (268)
T ss_pred CCHHHHHHHHHHHHhCCCCCCEEEECCc
Confidence 1111111222 223 35788877654
No 38
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=92.00 E-value=1.6 Score=36.92 Aligned_cols=150 Identities=11% Similarity=0.061 Sum_probs=78.2
Q ss_pred HHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHHHHH
Q 026235 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE 143 (241)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~L~ 143 (241)
.+.+.++++|+++...... +.....+.+. -..+|+||+++...-......+.+ .+++++++|....
T Consensus 20 gi~~~~~~~g~~~~~~~~~------~~~~~~~~l~-~~~vdgii~~~~~~~~~~~~~~~~---~~ipvV~~~~~~~---- 85 (261)
T cd06272 20 GINQAISKNGYNMNVSITP------SLAEAEDLFK-ENRFDGVIIFGESASDVEYLYKIK---LAIPVVSYGVDYD---- 85 (261)
T ss_pred HHHHHHHHcCCEEEEEecc------cHHHHHHHHH-HcCcCEEEEeCCCCChHHHHHHHH---cCCCEEEEcccCC----
Confidence 4556677889887766443 1222222331 257999998875433332333333 4588999986532
Q ss_pred HhhhccCCCCceeecCC-CCCHHHHHHHhhhCCCCccEEEEEccCCCc-------hhHHHHHHhCCCeeeEeeeeeeecC
Q 026235 144 EVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTEPV 215 (241)
Q Consensus 144 ~~~~~~~~Gi~~~~~p~-~~t~e~L~~~l~~~~~~~~~iL~~~g~~~~-------~~L~~~L~~~G~~V~~~~vY~~~~~ 215 (241)
. ++.. +..+ ...+..+++.|.+.. .++++++.+.... .-+.+.+++.|..+....++.....
T Consensus 86 -~------~~~~-V~~d~~~~~~~~~~~l~~~g--~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~ 155 (261)
T cd06272 86 -L------KYPI-VNVDNEKAMELAVLYLAEKG--HKKIAYIGDLSLDRRQRKRFKGFLETCDENGISISDSHIDVDGLS 155 (261)
T ss_pred -C------CCCE-EEEChHHHHHHHHHHHHHcC--chhEEEeecccccccHHHHHHHHHHHHHHcCCCCCHHHeeeCCCC
Confidence 2 3322 2223 234466677776653 4688888654331 2356677788865444333322111
Q ss_pred CCChHHHHHH-c---CCCCEEEEECC
Q 026235 216 HHVDQTVLKQ-A---LSIPVVAVASP 237 (241)
Q Consensus 216 ~~~~~~~~~~-l---~~id~IvFtSp 237 (241)
.....+.... + ..+|+|+.++.
T Consensus 156 ~~~~~~~~~~~l~~~~~~~ai~~~~d 181 (261)
T cd06272 156 AEGGDNAAKKLLKESDLPTAIICGSY 181 (261)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEECCc
Confidence 1111122222 3 24788777654
No 39
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=91.92 E-value=2.4 Score=36.22 Aligned_cols=153 Identities=13% Similarity=0.078 Sum_probs=79.5
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCc-hHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDT-DRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~-~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~ 141 (241)
..+.+.++++|+++...+.... .+. ..+...+ .-..+|+||+++...-....+.+.+ .+++++++|...
T Consensus 19 ~~i~~~~~~~gy~~~~~~~~~~---~~~~~~~~~~l-~~~~vdgvi~~~~~~~~~~~~~l~~---~~iPvv~~~~~~--- 88 (269)
T cd06297 19 EGIEGALLEQRYDLALFPLLSL---ARLKRYLESTT-LAYLTDGLLLASYDLTERLAERRLP---TERPVVLVDAEN--- 88 (269)
T ss_pred HHHHHHHHHCCCEEEEEeCCCc---HHHHHHHHHHH-HhcCCCEEEEecCccChHHHHHHhh---cCCCEEEEccCC---
Confidence 4566678888988887543311 111 1222222 2357999999985432333343433 467899998631
Q ss_pred HHHhhhccCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEccCCC-------------chhHHHHHHhCCCeeeEee
Q 026235 142 FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------------SNEIEEGLSNRGFEVVRLN 208 (241)
Q Consensus 142 L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~~~~~~iL~~~g~~~-------------~~~L~~~L~~~G~~V~~~~ 208 (241)
. ++..........+...++.|.+. . ++++++.+... ..-+.+.+++.|.++....
T Consensus 89 ---~------~~~~v~~d~~~~g~~a~~~L~~~-~--~~i~~i~~~~~~~~~~~~~~~~~R~~gf~~~~~~~g~~~~~~~ 156 (269)
T cd06297 89 ---P------RFDSFYLDNRLGGRLAGAYLADF-P--GRIGAITVEEEPDRAFRRTVFAERRAGFQQALKDAGRPFSPDL 156 (269)
T ss_pred ---C------CCCEEEECcHHHHHHHHHHHHHh-C--CceEEEeCccccccccccccHHHHHHHHHHHHHHcCCCCChhh
Confidence 2 32322222233445566667665 2 57777755332 1235567778888765533
Q ss_pred eeeeecCCCCh-HHHHHHc---CCCCEEEEECC
Q 026235 209 TYTTEPVHHVD-QTVLKQA---LSIPVVAVASP 237 (241)
Q Consensus 209 vY~~~~~~~~~-~~~~~~l---~~id~IvFtSp 237 (241)
++......... ..+.+.+ .++|+|+..+.
T Consensus 157 ~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d 189 (269)
T cd06297 157 LAITDHSEEGGRLAMRHLLEKASPPLAVFASAD 189 (269)
T ss_pred EEeCCCChhhHHHHHHHHHcCCCCCcEEEEcCc
Confidence 33332211111 2222223 25788877664
No 40
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=91.62 E-value=3.6 Score=34.92 Aligned_cols=119 Identities=13% Similarity=0.101 Sum_probs=64.1
Q ss_pred HHHHHHHH-CCCcEEEeceEEEeeCCCch----HHHHHHhcCCCccEEEEeCHH--HHHHHHHHHHhcCCCCcEEEEeCH
Q 026235 64 KLIKALAK-HRIDCLELPLIQHAQGPDTD----RLSSVLNADTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGA 136 (241)
Q Consensus 64 ~l~~~L~~-~G~~v~~~P~~~~~~~~~~~----~l~~~l~~l~~~d~IiFTS~~--aV~~f~~~l~~~~~~~~~i~aIG~ 136 (241)
.+.+.+++ .|+++...... .+.+ .++..+ . ...|++|+.+.. ........+.+ .+++++.+|.
T Consensus 20 gi~~~~~~~~~~~~~~~~~~-----~~~~~~~~~i~~l~-~-~~vdgiii~~~~~~~~~~~~~~l~~---~~iPvv~~~~ 89 (272)
T cd06301 20 AMKEHAKVLGGVELQFEDAK-----NDVATQLSQVENFI-A-QGVDAIIVVPVDTAATAPIVKAANA---AGIPLVYVNR 89 (272)
T ss_pred HHHHHHHHcCCcEEEEeCCC-----CCHHHHHHHHHHHH-H-cCCCEEEEecCchhhhHHHHHHHHH---CCCeEEEecC
Confidence 45556777 78777765331 1222 223322 2 479999987654 23334444433 4688999886
Q ss_pred HHHHHHHHhhhccCCCCceeecCCC-CCHHHHHHHhhhCCCCccEEEEEccCCCc-------hhHHHHHHhCC
Q 026235 137 GTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRG 201 (241)
Q Consensus 137 ~Ta~~L~~~~~~~~~Gi~~~~~p~~-~t~e~L~~~l~~~~~~~~~iL~~~g~~~~-------~~L~~~L~~~G 201 (241)
..... .. ++.. +..+. .....+++.|.+......+++++.|.... .-+.+.|+++|
T Consensus 90 ~~~~~--~~------~~~~-V~~d~~~~g~~~~~~l~~~~~~~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~ 153 (272)
T cd06301 90 RPENA--PK------GVAY-VGSDEVVAGRLQAEYVADKLGGKGNVAILMGPLGQSAQIDRTKGVEEVLAKYP 153 (272)
T ss_pred CCCCC--CC------eeEE-EecChHHHHHHHHHHHHHHhCCCccEEEEECCCCCccHHHHHHHHHHHHHHCC
Confidence 43211 12 2221 22232 33455666776653223589999775432 34566787777
No 41
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=91.57 E-value=1.1 Score=38.13 Aligned_cols=158 Identities=16% Similarity=0.135 Sum_probs=79.0
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhc--CCCccEEEEeCHHH--HHHHHHHHHhcCCCCcEEEEeCHHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEA--GSVFLEAWKEAGTPNVRIGVVGAGT 138 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~a--V~~f~~~l~~~~~~~~~i~aIG~~T 138 (241)
..+.+.++++|+.+........ .+.....+.++. ...+|+||+.+... ....+..+.. .+++++.++...
T Consensus 19 ~g~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~i~~l~~~~vdgvii~~~~~~~~~~~l~~~~~---~~ipvV~~~~~~ 92 (273)
T cd06310 19 AGAEAAAKELGVKVTFQGPASE---TDVAGQVNLLENAIARGPDAILLAPTDAKALVPPLKEAKD---AGIPVVLIDSGL 92 (273)
T ss_pred HHHHHHHHHcCCEEEEecCccC---CCHHHHHHHHHHHHHhCCCEEEEcCCChhhhHHHHHHHHH---CCCCEEEecCCC
Confidence 4455678889988876542111 122211222211 25799999976432 2223333332 467888887532
Q ss_pred HHHHHHhhhccCCCCceeecCCCC-CHHHHHHHhhhCCCCccEEEEEccCCCc-------hhHHHHHHhC-CCeeeEeee
Q 026235 139 ASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNR-GFEVVRLNT 209 (241)
Q Consensus 139 a~~L~~~~~~~~~Gi~~~~~p~~~-t~e~L~~~l~~~~~~~~~iL~~~g~~~~-------~~L~~~L~~~-G~~V~~~~v 209 (241)
.. .. .+.. +..+.+ .+..+++.+.+.....++++++.|.... .-+.+.|++. |+++.. .
T Consensus 93 ~~---~~------~~~~-v~~d~~~~~~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~r~~gf~~a~~~~~~~~~~~--~ 160 (273)
T cd06310 93 NS---DI------AVSF-VATDNVAAGKLAAEALAELLGKKGKVAVISFVPGSSTTDQREEGFLEGLKEYPGIEIVA--T 160 (273)
T ss_pred CC---Cc------ceEE-EeeChHHHHHHHHHHHHHHcCCCceEEEEeCCCCCccHHHHHHHHHHHHHhCCCcEEEe--c
Confidence 11 12 2222 233332 3455666776653234689998765432 2356678777 766543 2
Q ss_pred eeeecCCCChHHHH-HHc---CCCCEEEEECCc
Q 026235 210 YTTEPVHHVDQTVL-KQA---LSIPVVAVASPS 238 (241)
Q Consensus 210 Y~~~~~~~~~~~~~-~~l---~~id~IvFtSps 238 (241)
+..........+.. +.+ ..+|+|++.|..
T Consensus 161 ~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~d~ 193 (273)
T cd06310 161 QYSDSDYAKALDITEDLLTANPDLKGIFGANEG 193 (273)
T ss_pred ccCCcCHHHHHHHHHHHHHhCCCceEEEecCch
Confidence 22111111111222 222 357888887654
No 42
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=91.43 E-value=3.3 Score=35.28 Aligned_cols=125 Identities=10% Similarity=0.016 Sum_probs=67.4
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCc----hHHHHHHhcCCCccEEEEeCH--HHHHHHHHHHHhcCCCCcEEEEeCH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDT----DRLSSVLNADTIFDWIIITSP--EAGSVFLEAWKEAGTPNVRIGVVGA 136 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~----~~l~~~l~~l~~~d~IiFTS~--~aV~~f~~~l~~~~~~~~~i~aIG~ 136 (241)
..+.+.++++|+++.....-. ..+. ..++..+ ...+|+||+... ..+....+.+.+ .+++++.+|.
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~---~~~~~~~~~~i~~l~--~~~vdgiIi~~~~~~~~~~~~~~~~~---~~iPvV~~~~ 90 (275)
T cd06320 19 EGYENEAKKLGVSVDIQAAPS---EGDQQGQLSIAENMI--NKGYKGLLFSPISDVNLVPAVERAKK---KGIPVVNVND 90 (275)
T ss_pred HHHHHHHHHhCCeEEEEccCC---CCCHHHHHHHHHHHH--HhCCCEEEECCCChHHhHHHHHHHHH---CCCeEEEECC
Confidence 345667888898877543211 1111 1122333 147899988653 223334444443 3688999986
Q ss_pred HHHHHHHHhhhccCCCCceeecCCCC-CHHHHHHHhhhCCCCccEEEEEccCCCc-------hhHHHHHHhC-CCeeeE
Q 026235 137 GTASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNR-GFEVVR 206 (241)
Q Consensus 137 ~Ta~~L~~~~~~~~~Gi~~~~~p~~~-t~e~L~~~l~~~~~~~~~iL~~~g~~~~-------~~L~~~L~~~-G~~V~~ 206 (241)
.... . ... .+..+.+ .++.+++.+.+.....++++++.|.... .-+.+.++++ |+++..
T Consensus 91 ~~~~----~------~~~-~V~~d~~~~g~~~~~~l~~~~~g~~~i~~l~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~ 158 (275)
T cd06320 91 KLIP----N------ATA-FVGTDNKANGVRGAEWIIDKLAEGGKVAIIEGKAGAFAAEQRTEGFTEAIKKASGIEVVA 158 (275)
T ss_pred CCCC----c------cce-EEecCcHHHHHHHHHHHHHHhCCCceEEEEeCCCCCccHHHHHHHHHHHHhhCCCcEEEE
Confidence 4211 1 111 1233333 3556666676553234689988764321 3467788888 877653
No 43
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=91.30 E-value=2.7 Score=32.31 Aligned_cols=97 Identities=11% Similarity=0.097 Sum_probs=62.5
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHH-----HHHHHHHHHHhcCCCCcEEEEeCHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE-----AGSVFLEAWKEAGTPNVRIGVVGAG 137 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~-----aV~~f~~~l~~~~~~~~~i~aIG~~ 137 (241)
.-+...|+..|+++..+... .| .+++.+... -.+.|.|++++.. .++.+.+.+++.+.+++++++-|..
T Consensus 17 ~~~~~~l~~~G~~vi~lG~~--vp---~e~~~~~a~-~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~ 90 (122)
T cd02071 17 KVIARALRDAGFEVIYTGLR--QT---PEEIVEAAI-QEDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGII 90 (122)
T ss_pred HHHHHHHHHCCCEEEECCCC--CC---HHHHHHHHH-HcCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECCC
Confidence 44556789999999987654 22 233434442 3578888887643 3455566666666667888887644
Q ss_pred HHH---HHHHhhhccCCCCceeecCCCCCHHHHHHHhh
Q 026235 138 TAS---IFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (241)
Q Consensus 138 Ta~---~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~ 172 (241)
..+ .+++. |+.. +.....+.+..+..|.
T Consensus 91 ~~~~~~~~~~~------G~d~-~~~~~~~~~~~~~~~~ 121 (122)
T cd02071 91 PPEDYELLKEM------GVAE-IFGPGTSIEEIIDKIR 121 (122)
T ss_pred CHHHHHHHHHC------CCCE-EECCCCCHHHHHHHHh
Confidence 443 35677 9986 4455677888876653
No 44
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=90.87 E-value=5.1 Score=33.65 Aligned_cols=121 Identities=15% Similarity=0.190 Sum_probs=64.9
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~ 140 (241)
..+.+.++++|+.+..... . .+.+...+.++. -..+|+||+.....-....+.+.+ .+++++++|...
T Consensus 19 ~~i~~~a~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~~dgiii~~~~~~~~~l~~~~~---~~ipvV~~~~~~-- 88 (267)
T cd06283 19 KGIEDVCRAHGYQVLVCNS---D--NDPEKEKEYLESLLAYQVDGLIVNPTGNNKELYQRLAK---NGKPVVLVDRKI-- 88 (267)
T ss_pred HHHHHHHHHcCCEEEEEcC---C--CCHHHHHHHHHHHHHcCcCEEEEeCCCCChHHHHHHhc---CCCCEEEEcCCC--
Confidence 4566778888988754321 1 122222222222 257999999875422222333332 468899998642
Q ss_pred HHHHhhhccCCCCceeecCC-CCCHHHHHHHhhhCCCCccEEEEEccCCC--c------hhHHHHHHhCCCee
Q 026235 141 IFEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKKCTVLYPASAKA--S------NEIEEGLSNRGFEV 204 (241)
Q Consensus 141 ~L~~~~~~~~~Gi~~~~~p~-~~t~e~L~~~l~~~~~~~~~iL~~~g~~~--~------~~L~~~L~~~G~~V 204 (241)
... ++.. +..+ ...++.+++.|.+.. .++++++.+... . .-+.+.+++.|...
T Consensus 89 --~~~------~~~~-v~~d~~~~g~~~~~~l~~~g--~~~i~~l~~~~~~~~~~~~r~~g~~~~~~~~~~~~ 150 (267)
T cd06283 89 --PEL------GVDT-VTLDNYEAAKEAVDHLIEKG--YERILFVTEPLDEISPRMERYEGFKEALAEHGIGV 150 (267)
T ss_pred --CCC------CCCE-EEeccHHHHHHHHHHHHHcC--CCcEEEEecCccccccHHHHHHHHHHHHHHcCCCC
Confidence 123 3332 2223 234566677776653 468888866432 1 23566777777543
No 45
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=90.83 E-value=5.6 Score=34.99 Aligned_cols=153 Identities=14% Similarity=0.097 Sum_probs=77.0
Q ss_pred HHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHh--cCCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHHH
Q 026235 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN--ADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (241)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~--~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~ 141 (241)
.+.+.++++|+.+..... ..+.+...+.++ .-..+|+||+.+...-......+.+ .+++++.+|...
T Consensus 80 ~i~~~~~~~g~~~~i~~~-----~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~~~~~~l~~---~~iPvV~~~~~~--- 148 (329)
T TIGR01481 80 GIEDIATMYKYNIILSNS-----DEDPEKEVQVLNTLLSKQVDGIIFMGGTITEKLREEFSR---SPVPVVLAGTVD--- 148 (329)
T ss_pred HHHHHHHHcCCEEEEEeC-----CCCHHHHHHHHHHHHhCCCCEEEEeCCCCChHHHHHHHh---cCCCEEEEecCC---
Confidence 344566778987755321 112211112221 1267999998764322233333433 357888887532
Q ss_pred HHHhhhccCCCCceeecCCCC-CHHHHHHHhhhCCCCccEEEEEccCCCc--------hhHHHHHHhCCCeeeEeeeeee
Q 026235 142 FEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS--------NEIEEGLSNRGFEVVRLNTYTT 212 (241)
Q Consensus 142 L~~~~~~~~~Gi~~~~~p~~~-t~e~L~~~l~~~~~~~~~iL~~~g~~~~--------~~L~~~L~~~G~~V~~~~vY~~ 212 (241)
... ++.. +..+.+ .+..+++.|.+. ..+++.++.|.... .-+.+.|+++|.++....++..
T Consensus 149 -~~~------~~~~-V~~D~~~~~~~a~~~L~~~--G~~~I~~i~g~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~ 218 (329)
T TIGR01481 149 -KEN------ELPS-VNIDYKQATKEAVGELIAK--GHKSIAFVGGPLSDSINGEDRLEGYKEALNKAGIQFGEDLVCEG 218 (329)
T ss_pred -CCC------CCCE-EEECcHHHHHHHHHHHHHC--CCCeEEEEecCcccccchHHHHHHHHHHHHHcCCCCCcceEEec
Confidence 122 3332 333433 235566666654 34688888764321 2356778888887765444332
Q ss_pred ecCCCChHHHHHH-c-CCCCEEEEECC
Q 026235 213 EPVHHVDQTVLKQ-A-LSIPVVAVASP 237 (241)
Q Consensus 213 ~~~~~~~~~~~~~-l-~~id~IvFtSp 237 (241)
........+..+. + ..+|+|+..+-
T Consensus 219 ~~~~~~~~~~~~~ll~~~p~ai~~~~d 245 (329)
T TIGR01481 219 KYSYDAGYKAFAELKGSLPTAVFVASD 245 (329)
T ss_pred CCChHHHHHHHHHHhCCCCCEEEEcCc
Confidence 2211111222222 3 35788776653
No 46
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=90.64 E-value=4.3 Score=34.22 Aligned_cols=153 Identities=10% Similarity=-0.024 Sum_probs=79.2
Q ss_pred HHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHh--cCCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHHH
Q 026235 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN--ADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (241)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~--~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~ 141 (241)
.+.+.++++|+.+...+... +.....+.++ .-..+|.||+++...-. ...... ..+++++.+|..+..
T Consensus 21 ~i~~~~~~~g~~~~~~~~~~-----~~~~~~~~~~~l~~~~~dgiii~~~~~~~-~~~~~~---~~~ipvv~~~~~~~~- 90 (269)
T cd06288 21 GAQDAAREHGYLLLVVNTGG-----DDELEAEAVEALLDHRVDGIIYATMYHRE-VTLPPE---LLSVPTVLLNCYDAD- 90 (269)
T ss_pred HHHHHHHHCCCEEEEEeCCC-----CHHHHHHHHHHHHHcCCCEEEEecCCCCh-hHHHHH---hcCCCEEEEecccCC-
Confidence 45566778898876553221 1111111121 12678999998753211 111121 246889999865421
Q ss_pred HHHhhhccCCCCceeecCCC-CCHHHHHHHhhhCCCCccEEEEEccCCCc-------hhHHHHHHhCCCeeeEeeeeeee
Q 026235 142 FEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTE 213 (241)
Q Consensus 142 L~~~~~~~~~Gi~~~~~p~~-~t~e~L~~~l~~~~~~~~~iL~~~g~~~~-------~~L~~~L~~~G~~V~~~~vY~~~ 213 (241)
. .+.. +.++. ..+..+++.+.+. ..++++++.+.... .-+.+.++++|.++....++...
T Consensus 91 ---~------~~~~-v~~d~~~~~~~a~~~l~~~--g~~~i~~l~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~ 158 (269)
T cd06288 91 ---G------ALPS-VVPDEEQGGYDATRHLLAA--GHRRIAFINGEPWMLAAKDRLKGYRQALAEAGIPFDPDLVVHGD 158 (269)
T ss_pred ---C------CCCe-EEEccHHHHHHHHHHHHHc--CCceEEEEeCCccchhHHHHHHHHHHHHHHcCCCCCHHHeEeCC
Confidence 2 3332 33333 3456667777665 34689998776542 23456777777665443333322
Q ss_pred cCCCCh-HHHHHHc---CCCCEEEEECCc
Q 026235 214 PVHHVD-QTVLKQA---LSIPVVAVASPS 238 (241)
Q Consensus 214 ~~~~~~-~~~~~~l---~~id~IvFtSps 238 (241)
...... ..+.+.+ ..+|+|+.+|..
T Consensus 159 ~~~~~~~~~~~~~l~~~~~~~ai~~~~d~ 187 (269)
T cd06288 159 WSADDGYEAAAALLDLDDRPTAIFCGNDR 187 (269)
T ss_pred CChHHHHHHHHHHHhCCCCCCEEEEeCcH
Confidence 221111 2222223 358999888754
No 47
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=90.60 E-value=5.6 Score=35.21 Aligned_cols=151 Identities=14% Similarity=0.148 Sum_probs=77.0
Q ss_pred HHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhc--CCCccEEEEeCHHH-HHHHHHHHHhcCCCCcEEEEeCHHHHHH
Q 026235 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEA-GSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (241)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~a-V~~f~~~l~~~~~~~~~i~aIG~~Ta~~ 141 (241)
+.+.++++|+.+...+. . .+.+...+.++. ...+|+||+.+... .....+.+.+ .+++++.++...
T Consensus 86 i~~~a~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~l~~---~~iPvV~~~~~~--- 154 (342)
T PRK10014 86 LTEALEAQGRMVFLLQG---G--KDGEQLAQRFSTLLNQGVDGVVIAGAAGSSDDLREMAEE---KGIPVVFASRAS--- 154 (342)
T ss_pred HHHHHHHcCCEEEEEeC---C--CCHHHHHHHHHHHHhCCCCEEEEeCCCCCcHHHHHHHhh---cCCCEEEEecCC---
Confidence 45667788987654321 1 122222222221 25799999986542 2333343433 357888887532
Q ss_pred HHHhhhccCCCCceeecCCCC-CHHHHHHHhhhCCCCccEEEEEccCCCc-------hhHHHHHHhCCCeeeEeeeeeee
Q 026235 142 FEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTE 213 (241)
Q Consensus 142 L~~~~~~~~~Gi~~~~~p~~~-t~e~L~~~l~~~~~~~~~iL~~~g~~~~-------~~L~~~L~~~G~~V~~~~vY~~~ 213 (241)
... ++.. +..+.+ .+..+++.|.+.. .++|+++.|.... .-+.+.|++.|+.+....++...
T Consensus 155 -~~~------~~~~-V~~D~~~~~~~a~~~L~~~G--~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~ 224 (342)
T PRK10014 155 -YLD------DVDT-VRPDNMQAAQLLTEHLIRNG--HQRIAWLGGQSSSLTRAERVGGYCATLLKFGLPFHSEWVLECT 224 (342)
T ss_pred -CCC------CCCE-EEeCCHHHHHHHHHHHHHCC--CCEEEEEcCCcccccHHHHHHHHHHHHHHcCCCCCcceEecCC
Confidence 112 3332 233332 3455666776653 4689999775432 23567888888876543333221
Q ss_pred cCCCChHHH-HHHc---CCCCEEEEEC
Q 026235 214 PVHHVDQTV-LKQA---LSIPVVAVAS 236 (241)
Q Consensus 214 ~~~~~~~~~-~~~l---~~id~IvFtS 236 (241)
.......+. .+.+ ..+++|+..+
T Consensus 225 ~~~~~~~~~~~~~l~~~~~~~ai~~~n 251 (342)
T PRK10014 225 SSQKQAAEAITALLRHNPTISAVVCYN 251 (342)
T ss_pred CChHHHHHHHHHHHcCCCCCCEEEECC
Confidence 111111122 2223 3578877665
No 48
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=90.57 E-value=8.2 Score=33.07 Aligned_cols=157 Identities=14% Similarity=0.095 Sum_probs=77.1
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHHHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~L 142 (241)
..+.+.++++|+++...+... + .+.....+.+ .-..+|.||+++...-....+.+.. ..+++++.+|...
T Consensus 22 ~gi~~~~~~~gy~~~i~~~~~--~-~~~~~~i~~l-~~~~vdgiI~~~~~~~~~~~~~~~~--~~~~PiV~i~~~~---- 91 (265)
T cd06354 22 EGLERAAKELGIEYKYVESKS--D-ADYEPNLEQL-ADAGYDLIVGVGFLLADALKEVAKQ--YPDQKFAIIDAVV---- 91 (265)
T ss_pred HHHHHHHHHcCCeEEEEecCC--H-HHHHHHHHHH-HhCCCCEEEEcCcchHHHHHHHHHH--CCCCEEEEEeccc----
Confidence 345567888999888764431 1 1111222222 1268999999875433333333332 2367899998642
Q ss_pred HH-hhhccCCCCceeecCCCCCH-HHHHHHhhhCCCCccEEEEEccCCC-----c-hhHHHHHHhCC---CeeeEeeeee
Q 026235 143 EE-VIQSSKCSLDVAFSPSKATG-KILASELPKNGKKKCTVLYPASAKA-----S-NEIEEGLSNRG---FEVVRLNTYT 211 (241)
Q Consensus 143 ~~-~~~~~~~Gi~~~~~p~~~t~-e~L~~~l~~~~~~~~~iL~~~g~~~-----~-~~L~~~L~~~G---~~V~~~~vY~ 211 (241)
.. . ++.. +..+.+.+ ..+...+... ...+++.++.+... + .-+.+.+++.| ..+....++.
T Consensus 92 ~~~~------~~~~-v~~d~~~a~~~a~~ll~~~-~G~~~I~~i~~~~~~~~~~r~~gf~~~~~~~g~~~~~~~~~~~~~ 163 (265)
T cd06354 92 DDPP------NVAS-IVFKEEEGSFLAGYLAALM-TKTGKVGFIGGMDIPLIRRFEAGFEAGVKYVNPGVPDIEVLVQYA 163 (265)
T ss_pred CCCC------cEEE-EEecchhHHHHHHHHHHhh-cCCCeEEEEecccChHHHHHHHHHHHHHHHHhccCCCceEEEEEc
Confidence 12 2 2222 22333332 3333333322 13478999976432 1 23556667777 5554433333
Q ss_pred eecC-CCChHHHHHH-c-CCCCEEEEECC
Q 026235 212 TEPV-HHVDQTVLKQ-A-LSIPVVAVASP 237 (241)
Q Consensus 212 ~~~~-~~~~~~~~~~-l-~~id~IvFtSp 237 (241)
.... .....+..+. + ..+|+|+.++-
T Consensus 164 ~~~~~~~~~~~~~~~ll~~~pdaI~~~nd 192 (265)
T cd06354 164 GSFNDPAKGKEIAQAMYDQGADVIFAAAG 192 (265)
T ss_pred CcccCHHHHHHHHHHHHHCCCcEEEECCC
Confidence 2211 1111222223 3 35788776643
No 49
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=90.53 E-value=8.7 Score=35.99 Aligned_cols=172 Identities=12% Similarity=0.041 Sum_probs=93.6
Q ss_pred CCCCCCeEEEeCCCCChHHHHHHHHHCCC-cEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHH-HHHHHHHh
Q 026235 46 ASNSNPKVVVTRERGKNGKLIKALAKHRI-DCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGS-VFLEAWKE 123 (241)
Q Consensus 46 ~~l~g~~VLitR~~~~~~~l~~~L~~~G~-~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~-~f~~~l~~ 123 (241)
.|...++|+++.+- .....+.|++.|+ ++...+. . .+.+++. +.+.++|.+++.+..-+. .+++.+
T Consensus 6 ~~~~~~~ili~~~~--~~~~~~~l~~~~~~~v~~~~~----~-~~~~~~~---~~~~~~d~l~~~~~~~~~~~~l~~~-- 73 (409)
T PRK11790 6 LPKDKIKFLLLEGV--HQSAVEVLRAAGYTNIEYHKG----A-LDEEELI---EAIKDAHFIGIRSRTQLTEEVLAAA-- 73 (409)
T ss_pred CCCCCeEEEEECCC--CHHHHHHHHhcCCceEEECCC----C-CCHHHHH---HHcCCCCEEEEeCCCCCCHHHHhhC--
Confidence 34445789998654 2456677888776 5554321 1 1223333 345788988776542222 222222
Q ss_pred cCCCCcEEE---EeCHH--HHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhh-------h------------------
Q 026235 124 AGTPNVRIG---VVGAG--TASIFEEVIQSSKCSLDVAFSPSKATGKILASELP-------K------------------ 173 (241)
Q Consensus 124 ~~~~~~~i~---aIG~~--Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~-------~------------------ 173 (241)
++++++ .+|-- -.+++.+. |+.+.-.|. .+++.++|... +
T Consensus 74 ---~~Lk~I~~~~~G~d~id~~~~~~~------gI~V~n~pg-~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~ 143 (409)
T PRK11790 74 ---EKLVAIGCFCIGTNQVDLDAAAKR------GIPVFNAPF-SNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSA 143 (409)
T ss_pred ---CCCeEEEECceecccccHHHHHhC------CCEEEeCCC-CChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccc
Confidence 345544 34433 23567778 998866653 44444443321 0
Q ss_pred ---CCCCccEEEEEccCCCchhHHHHHHhCCCeeeEeeeeeeecCCC--ChHHHHHHcCCCCEEEEECCcc
Q 026235 174 ---NGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHH--VDQTVLKQALSIPVVAVASPSA 239 (241)
Q Consensus 174 ---~~~~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~--~~~~~~~~l~~id~IvFtSps~ 239 (241)
....|+++.++.-..-...+.+.|+..|.+|..+..+....... ....+.+.+...|+|++.-|.+
T Consensus 144 ~~~~~L~gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~~~~~~~~~~l~ell~~sDiVslh~Plt 214 (409)
T PRK11790 144 AGSFEVRGKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLPLGNARQVGSLEELLAQSDVVSLHVPET 214 (409)
T ss_pred cCcccCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcccccCCceecCCHHHHHhhCCEEEEcCCCC
Confidence 01246677777555555678899999998775554432211110 0112333347889999987754
No 50
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=90.47 E-value=4.2 Score=34.23 Aligned_cols=155 Identities=14% Similarity=0.027 Sum_probs=78.8
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHHHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~L 142 (241)
..+.+.++++|+++...+... ......++.+.+ .....|+||+.+...-....+.+.+ . .+++.++..+.
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~--~~~~~~~~i~~l-~~~~vdgiii~~~~~~~~~~~~~~~---~-~pvv~~~~~~~--- 88 (260)
T cd06286 19 DGIEKAALKHGYKVVLLQTNY--DKEKELEYLELL-KTKQVDGLILCSRENDWEVIEPYTK---Y-GPIVLCEEYDS--- 88 (260)
T ss_pred HHHHHHHHHcCCEEEEEeCCC--ChHHHHHHHHHH-HHcCCCEEEEeCCCCCHHHHHHHhc---C-CCEEEEecccC---
Confidence 345667778898886553311 000111122222 1257899998764321122233322 2 37888886532
Q ss_pred HHhhhccCCCCceeecCC-CCCHHHHHHHhhhCCCCccEEEEEccCCCc-------hhHHHHHHhCCCeeeEeeeeeeec
Q 026235 143 EEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTEP 214 (241)
Q Consensus 143 ~~~~~~~~~Gi~~~~~p~-~~t~e~L~~~l~~~~~~~~~iL~~~g~~~~-------~~L~~~L~~~G~~V~~~~vY~~~~ 214 (241)
. ++.. +..+ ......+++.|.+.. .++++++.+.... .-+.+.|++.|+++....+|....
T Consensus 89 --~------~~~~-v~~d~~~~~~~~~~~l~~~g--~~~i~~i~~~~~~~~~~~R~~Gf~~~l~~~~~~~~~~~i~~~~~ 157 (260)
T cd06286 89 --K------NISS-VYIDHYEAFYEALKYLIQKG--YRKIAYCIGRKKSLNSQSRKKAYKDALEEYGLTPDEEWIFEGCF 157 (260)
T ss_pred --C------CCCE-EEECChHHHHHHHHHHHHCC--CceEEEEcCCcccchhHHHHHHHHHHHHHcCCCCChHheEeCCC
Confidence 3 4332 3333 334455666776653 4789999776432 235667888887665433433221
Q ss_pred CCCChHHHHHH-c---CCCCEEEEECCc
Q 026235 215 VHHVDQTVLKQ-A---LSIPVVAVASPS 238 (241)
Q Consensus 215 ~~~~~~~~~~~-l---~~id~IvFtSps 238 (241)
......+..+. + ..+|+|+..+-.
T Consensus 158 ~~~~~~~~~~~~l~~~~~~~ai~~~~d~ 185 (260)
T cd06286 158 TIEDGERIGHQLLKMKDRPDAIFTGSDE 185 (260)
T ss_pred CHHHHHHHHHHHHcCCCCCCEEEEcchH
Confidence 11111222222 2 367888876643
No 51
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=90.41 E-value=3.4 Score=34.93 Aligned_cols=123 Identities=10% Similarity=0.093 Sum_probs=65.6
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHHHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~L 142 (241)
..+.+.++++|+++.....-. .....+.+...+ .-..+|.||+.+...-....+.+.+ .++++++++.....
T Consensus 24 ~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~-~~~~~dgiii~~~~~~~~~~~~~~~---~~ipvV~~~~~~~~-- 95 (270)
T cd06294 24 RGISAVANENGYDISLATGKN--EEELLEEVKKMI-QQKRVDGFILLYSREDDPIIDYLKE---EKFPFVVIGKPEDD-- 95 (270)
T ss_pred HHHHHHHHHCCCEEEEecCCC--cHHHHHHHHHHH-HHcCcCEEEEecCcCCcHHHHHHHh---cCCCEEEECCCCCC--
Confidence 345667888898876432110 000012233333 2256999999865433333443433 46889999853211
Q ss_pred HHhhhccCCCCceeecCCCC-CHHHHHHHhhhCCCCccEEEEEccCCCch-------hHHHHHHhCCCe
Q 026235 143 EEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKASN-------EIEEGLSNRGFE 203 (241)
Q Consensus 143 ~~~~~~~~~Gi~~~~~p~~~-t~e~L~~~l~~~~~~~~~iL~~~g~~~~~-------~L~~~L~~~G~~ 203 (241)
.. ++.. +..+.+ ....+++.|.+. ..++++++.+..... -+.+.+++.|..
T Consensus 96 -~~------~~~~-v~~d~~~~g~~~~~~l~~~--g~~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~ 154 (270)
T cd06294 96 -KE------NITY-VDNDNIQAGYDATEYLIKL--GHKKIAFVGGDLDLEVTQDRLQGYKQALEDHGIP 154 (270)
T ss_pred -CC------CCCe-EEECcHHHHHHHHHHHHHc--CCccEEEecCCcccHHHHHHHHHHHHHHHHcCCC
Confidence 01 2221 223332 345666777665 246899998765432 356677777754
No 52
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=90.35 E-value=3.2 Score=35.16 Aligned_cols=123 Identities=11% Similarity=0.053 Sum_probs=64.8
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCC--chHHHHHHhcCCCccEEEEeCH--HHHHHHHHHHHhcCCCCcEEEEeCHHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLNADTIFDWIIITSP--EAGSVFLEAWKEAGTPNVRIGVVGAGT 138 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~--~~~l~~~l~~l~~~d~IiFTS~--~aV~~f~~~l~~~~~~~~~i~aIG~~T 138 (241)
..+.+.++++|+++...+. ...++ .+.++..+. ..+|+||+.+. ......+..+.+ .++++++++...
T Consensus 19 ~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~l~~~~~--~~vdgii~~~~~~~~~~~~i~~~~~---~~ipvV~~~~~~ 90 (273)
T cd06305 19 AGTKAEAEALGGDLRVYDA---GGDDAKQADQIDQAIA--QKVDAIIIQHGRAEVLKPWVKRALD---AGIPVVAFDVDS 90 (273)
T ss_pred HHHHHHHHHcCCEEEEECC---CCCHHHHHHHHHHHHH--cCCCEEEEecCChhhhHHHHHHHHH---cCCCEEEecCCC
Confidence 4456778899998876432 11111 122333332 47999999764 334444444544 357788887542
Q ss_pred HHHHHHhhhccCCCCceeecCCC-CCHHHHHHHhhhCCCCccEEEEEccCCCc------hhHHHHHHhCC-Cee
Q 026235 139 ASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS------NEIEEGLSNRG-FEV 204 (241)
Q Consensus 139 a~~L~~~~~~~~~Gi~~~~~p~~-~t~e~L~~~l~~~~~~~~~iL~~~g~~~~------~~L~~~L~~~G-~~V 204 (241)
.. . ++.. +..+. .....+++.|.+......++.++.+.... .-+.+.+++.| +.+
T Consensus 91 ~~----~------~~~~-V~~d~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~R~~g~~~~~~~~~~~~~ 153 (273)
T cd06305 91 DN----P------KVNN-TTQDDYSLARLSLDQLVKDLGGKGNVGYVNVAGFPPLDRRYDVWQAVLKAYPGIKE 153 (273)
T ss_pred CC----C------ccce-eeechHHHHHHHHHHHHHHhCCCCCEEEEEccCCchHHHHHHHHHHHHHHCCCcEE
Confidence 11 2 3222 22222 23455666666532234688888764211 13556677666 443
No 53
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=90.22 E-value=3.3 Score=34.36 Aligned_cols=120 Identities=13% Similarity=0.162 Sum_probs=64.5
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCC-chHHHHHHhcCCCccEEEEeCHHHHHH-HHHHHHhcCCCCcEEEEeCHHHHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPD-TDRLSSVLNADTIFDWIIITSPEAGSV-FLEAWKEAGTPNVRIGVVGAGTAS 140 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~-~~~l~~~l~~l~~~d~IiFTS~~aV~~-f~~~l~~~~~~~~~i~aIG~~Ta~ 140 (241)
..+.+.++++|+++...+.-.. + .. .+.+.+.+ . .++|.||+.+...-.. .+..+.+ .+++++.+|.....
T Consensus 19 ~g~~~~~~~~g~~l~~~~~~~~-~-~~~~~~~~~~~-~-~~~d~ii~~~~~~~~~~~~~~l~~---~~ip~v~~~~~~~~ 91 (264)
T cd01537 19 KGIEEAAKAAGYQVLLANSQND-A-EKQLSALENLI-A-RGVDGIIIAPSDLTAPTIVKLARK---AGIPVVLVDRDIPD 91 (264)
T ss_pred HHHHHHHHHcCCeEEEEeCCCC-H-HHHHHHHHHHH-H-cCCCEEEEecCCCcchhHHHHhhh---cCCCEEEeccCCCC
Confidence 4455667778887665543211 0 01 12233333 2 4799999877543322 2333333 46888888766433
Q ss_pred HHHHhhhccCCCCceeecCC-CCCHHHHHHHhhhCCCCccEEEEEccCCC-------chhHHHHHHhCC
Q 026235 141 IFEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRG 201 (241)
Q Consensus 141 ~L~~~~~~~~~Gi~~~~~p~-~~t~e~L~~~l~~~~~~~~~iL~~~g~~~-------~~~L~~~L~~~G 201 (241)
.. .+.. +..+ ......+++.+.+.. .++++++.+... ...+.+.+++.|
T Consensus 92 ---~~------~~~~-v~~d~~~~~~~~~~~l~~~g--~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~ 148 (264)
T cd01537 92 ---GD------RVPS-VGSDNEQAGYLAGEHLAEKG--HRRIALLAGPLGSSTARERVAGFKDALKEAG 148 (264)
T ss_pred ---Cc------ccce-EecCcHHHHHHHHHHHHHhc--CCcEEEEECCCCCCcHHHHHHHHHHHHHHcC
Confidence 11 2111 2222 234566666776553 468888877543 245666777776
No 54
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=90.14 E-value=2.5 Score=37.31 Aligned_cols=164 Identities=11% Similarity=0.092 Sum_probs=78.9
Q ss_pred hHHHHHHHHHCCCcEEEeceEEEeeC-CCchHHHHHHh--cCCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCH--
Q 026235 62 NGKLIKALAKHRIDCLELPLIQHAQG-PDTDRLSSVLN--ADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGA-- 136 (241)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~~~~-~~~~~l~~~l~--~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~-- 136 (241)
.+-+.+.|++.|+....+ -|+.... .+.+.+.+.++ ...++|.|+-+...+.....+.... +++++..|-
T Consensus 17 ~~gf~~~L~~~g~~~~~~-~~~~~~a~~d~~~~~~~~~~l~~~~~DlIi~~gt~aa~~~~~~~~~----~iPVVf~~V~d 91 (294)
T PF04392_consen 17 VRGFKDGLKELGYDEKNV-EIEYKNAEGDPEKLRQIARKLKAQKPDLIIAIGTPAAQALAKHLKD----DIPVVFCGVSD 91 (294)
T ss_dssp HHHHHHHHHHTT--CCCE-EEEEEE-TT-HHHHHHHHHHHCCTS-SEEEEESHHHHHHHHHH-SS-----S-EEEECES-
T ss_pred HHHHHHHHHHcCCccccE-EEEEecCCCCHHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHhcCC----CcEEEEEeccC
Confidence 345777888999876222 2222222 23444444443 2368999998888888877765432 277766664
Q ss_pred -HHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEccCC-C-----chhHHHHHHhCCCeeeEeee
Q 026235 137 -GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAK-A-----SNEIEEGLSNRGFEVVRLNT 209 (241)
Q Consensus 137 -~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~~~~~~iL~~~g~~-~-----~~~L~~~L~~~G~~V~~~~v 209 (241)
..+...... .. -|-.+.=+.+....+..++.+.+..+.-+++.++-... . ...+.+..++.|+++.++.+
T Consensus 92 p~~~~l~~~~-~~--~~~nvTGv~~~~~~~~~l~l~~~l~P~~k~igvl~~~~~~~~~~~~~~~~~~a~~~g~~l~~~~v 168 (294)
T PF04392_consen 92 PVGAGLVDSL-DR--PGKNVTGVSERPPIEKQLELIKKLFPDAKRIGVLYDPSEPNSVAQIEQLRKAAKKLGIELVEIPV 168 (294)
T ss_dssp TTTTTS-S-S-SS----SSEEEEEE---HHHHHHHHHHHSTT--EEEEEEETT-HHHHHHHHHHHHHHHHTT-EEEEEEE
T ss_pred hhhhhccccc-cC--CCCCEEEEECCcCHHHHHHHHHHhCCCCCEEEEEecCCCccHHHHHHHHHHHHHHcCCEEEEEec
Confidence 111111111 00 01111112245567778888887766557885544432 2 23567777888988776655
Q ss_pred eeeecCCCChHHHHHHc-CCCCEEEEECC
Q 026235 210 YTTEPVHHVDQTVLKQA-LSIPVVAVASP 237 (241)
Q Consensus 210 Y~~~~~~~~~~~~~~~l-~~id~IvFtSp 237 (241)
-.. .......+.+ ++.|++++...
T Consensus 169 ~~~----~~~~~~~~~l~~~~da~~~~~~ 193 (294)
T PF04392_consen 169 PSS----EDLEQALEALAEKVDALYLLPD 193 (294)
T ss_dssp SSG----GGHHHHHHHHCTT-SEEEE-S-
T ss_pred CcH----hHHHHHHHHhhccCCEEEEECC
Confidence 322 1122333344 67898877653
No 55
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=89.99 E-value=6.6 Score=33.25 Aligned_cols=154 Identities=7% Similarity=0.005 Sum_probs=77.0
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~ 140 (241)
..+.+.++++|+.+...... .+.+...+.++. -..+|+||+++..--...++.+.+ .++++++++...
T Consensus 19 ~g~~~~a~~~g~~~~~~~~~-----~~~~~~~~~i~~~~~~~vdgii~~~~~~~~~~~~~~~~---~~ipvV~~~~~~-- 88 (268)
T cd06270 19 SGVESVARKAGKHLIITAGH-----HSAEKEREAIEFLLERRCDALILHSKALSDDELIELAA---QVPPLVLINRHI-- 88 (268)
T ss_pred HHHHHHHHHCCCEEEEEeCC-----CchHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHhh---CCCCEEEEeccC--
Confidence 34556778899988754321 111111122211 268999999764211111333332 467899998642
Q ss_pred HHHHhhhccCCCCceeecCC-CCCHHHHHHHhhhCCCCccEEEEEccCCCc-------hhHHHHHHhCCCeeeEeeeeee
Q 026235 141 IFEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTT 212 (241)
Q Consensus 141 ~L~~~~~~~~~Gi~~~~~p~-~~t~e~L~~~l~~~~~~~~~iL~~~g~~~~-------~~L~~~L~~~G~~V~~~~vY~~ 212 (241)
... +... +..+ ...++.+++.|.+. ..+++.++.+.... .-+.+.+++.|..+....++..
T Consensus 89 --~~~------~~~~-v~~d~~~~~~~~~~~l~~~--g~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~ 157 (268)
T cd06270 89 --PGL------ADRC-IWLDNEQGGYLATEHLIEL--GHRKIACITGPLTKEDARLRLQGYRDALAEAGIALDESLIIEG 157 (268)
T ss_pred --CCC------CCCe-EEECcHHHHHHHHHHHHHC--CCceEEEEeCCcccccHHHHHHHHHHHHHHcCCCCCcceEEEC
Confidence 112 2221 2233 23445566677654 34688888765322 2356778888876643333322
Q ss_pred ecCCCChHHHHHH-c---CCCCEEEEECC
Q 026235 213 EPVHHVDQTVLKQ-A---LSIPVVAVASP 237 (241)
Q Consensus 213 ~~~~~~~~~~~~~-l---~~id~IvFtSp 237 (241)
........+..+. + ..+|+|+-++.
T Consensus 158 ~~~~~~~~~~~~~~l~~~~~~~ai~~~~d 186 (268)
T cd06270 158 DFTEEGGYAAMQELLARGAPFTAVFCAND 186 (268)
T ss_pred CCCHHHHHHHHHHHHhCCCCCCEEEEcCc
Confidence 2211111222222 3 24787776654
No 56
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=89.98 E-value=3.8 Score=34.79 Aligned_cols=155 Identities=14% Similarity=0.062 Sum_probs=76.0
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCC-chHHHHHHhcCCCccEEEEeCHH-----HHHHHHHHHHhcCCCCcEEEEeCH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPD-TDRLSSVLNADTIFDWIIITSPE-----AGSVFLEAWKEAGTPNVRIGVVGA 136 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~-~~~l~~~l~~l~~~d~IiFTS~~-----aV~~f~~~l~~~~~~~~~i~aIG~ 136 (241)
..+.+.++++|+++...+... ..+ ..+..+.+.. ..+|+||+++.. +.......+.+ .+++++++|.
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~---~~~~~~~~i~~l~~-~~vdgiIi~~~~~~~~~~~~~~i~~~~~---~~ipvV~i~~ 91 (273)
T cd06292 19 EAIEAALAQYGYTVLLCNTYR---GGVSEADYVEDLLA-RGVRGVVFISSLHADTHADHSHYERLAE---RGLPVVLVNG 91 (273)
T ss_pred HHHHHHHHHCCCEEEEEeCCC---ChHHHHHHHHHHHH-cCCCEEEEeCCCCCcccchhHHHHHHHh---CCCCEEEEcC
Confidence 456667788998876432211 111 1122222212 579999997632 22222333332 4688999986
Q ss_pred HHHHHHHHhhhccCCCCceeecCC-CCCHHHHHHHhhhCCCCccEEEEEccCCCc-------hhHHHHHHhCCCeeeEee
Q 026235 137 GTASIFEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLN 208 (241)
Q Consensus 137 ~Ta~~L~~~~~~~~~Gi~~~~~p~-~~t~e~L~~~l~~~~~~~~~iL~~~g~~~~-------~~L~~~L~~~G~~V~~~~ 208 (241)
.... .. ++.. +..+ ......+++.|.+.. .++++++.|.... .-+.+.++++|..+....
T Consensus 92 ~~~~---~~------~~~~-V~~d~~~~~~~~~~~l~~~g--~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~ 159 (273)
T cd06292 92 RAPP---PL------KVPH-VSTDDALAMRLAVRHLVALG--HRRIGFASGPGRTVPRRRKIAGFRAALEEAGLEPPEAL 159 (273)
T ss_pred CCCC---CC------CCCE-EEECcHHHHHHHHHHHHHCC--CceEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhh
Confidence 4321 12 2232 2222 234455666666543 4688888765321 235567777776543322
Q ss_pred eeeeecCCCChHHHHHH-c-CCCCEEEEEC
Q 026235 209 TYTTEPVHHVDQTVLKQ-A-LSIPVVAVAS 236 (241)
Q Consensus 209 vY~~~~~~~~~~~~~~~-l-~~id~IvFtS 236 (241)
++..........+..+. + ..+|+|+-.+
T Consensus 160 i~~~~~~~~~~~~~~~~~l~~~~~ai~~~~ 189 (273)
T cd06292 160 VARGMFSVEGGQAAAVELLGSGPTAIVAAS 189 (273)
T ss_pred eEeCCCCHHHHHHHHHHHhcCCCCEEEEcC
Confidence 32222111111222222 3 3478776554
No 57
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=89.96 E-value=4.2 Score=34.34 Aligned_cols=124 Identities=14% Similarity=0.169 Sum_probs=65.6
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHH-HHHHHHHHHhcCCCCcEEEEeCHHHHHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA-GSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~a-V~~f~~~l~~~~~~~~~i~aIG~~Ta~~ 141 (241)
..+.+.++++|+++.......-.. .....+.+.+ ....+|+||+++.+. .....+.+.+ .+++++.+|.....
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~l-~~~~vdgiii~~~~~~~~~~~~~~~~---~~ipvv~i~~~~~~- 92 (270)
T cd01545 19 LGALDACRDTGYQLVIEPCDSGSP-DLAERVRALL-QRSRVDGVILTPPLSDNPELLDLLDE---AGVPYVRIAPGTPD- 92 (270)
T ss_pred HHHHHHHHhCCCeEEEEeCCCCch-HHHHHHHHHH-HHCCCCEEEEeCCCCCccHHHHHHHh---cCCCEEEEecCCCC-
Confidence 345567788898877554321100 0111233333 226799999987642 2233333333 46889998864211
Q ss_pred HHHhhhccCCCCceeecCCCC-CHHHHHHHhhhCCCCccEEEEEccCCCch-------hHHHHHHhCCCee
Q 026235 142 FEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKASN-------EIEEGLSNRGFEV 204 (241)
Q Consensus 142 L~~~~~~~~~Gi~~~~~p~~~-t~e~L~~~l~~~~~~~~~iL~~~g~~~~~-------~L~~~L~~~G~~V 204 (241)
. .+.. +..+.+ ....+++.+.+. ..+++.++.+..... -+.+.+++.|..+
T Consensus 93 ---~------~~~~-V~~d~~~~g~~a~~~l~~~--g~~~i~~i~~~~~~~~~~~R~~Gf~~~~~~~~~~~ 151 (270)
T cd01545 93 ---P------DSPC-VRIDDRAAAREMTRHLIDL--GHRRIAFIAGPPDHRASAERLEGYRDALAEAGLPL 151 (270)
T ss_pred ---C------CCCe-EEeccHHHHHHHHHHHHHC--CCceEEEEeCCCCchhHHHHHHHHHHHHHHcCCCC
Confidence 2 2221 222322 335566666664 347888887655432 2455667777665
No 58
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=89.94 E-value=5.4 Score=33.86 Aligned_cols=152 Identities=11% Similarity=0.060 Sum_probs=78.1
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhc--CCCccEEEEeCHHHH-HHHHHHHHhcCCCCcEEEEeCHHHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAG-SVFLEAWKEAGTPNVRIGVVGAGTA 139 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~aV-~~f~~~l~~~~~~~~~i~aIG~~Ta 139 (241)
..+.+.++++|+++...... .+.+...+.++. -..+|+||+.+...- ..+...+.+ .+++++.+|....
T Consensus 19 ~~i~~~a~~~g~~~~~~~~~-----~~~~~~~~~i~~l~~~~vdgii~~~~~~~~~~~~~~~~~---~~ipvV~i~~~~~ 90 (269)
T cd06281 19 SGAEDRLRAAGYSLLIANSL-----NDPERELEILRSFEQRRMDGIIIAPGDERDPELVDALAS---LDLPIVLLDRDMG 90 (269)
T ss_pred HHHHHHHHHcCCEEEEEeCC-----CChHHHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHHHh---CCCCEEEEecccC
Confidence 34556788889887754321 122111122211 257999998875321 233444433 3588999986532
Q ss_pred HHHHHhhhccCCCCceeecCCCC-CHHHHHHHhhhCCCCccEEEEEccCCCc-------hhHHHHHHhCCCeeeEeeeee
Q 026235 140 SIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYT 211 (241)
Q Consensus 140 ~~L~~~~~~~~~Gi~~~~~p~~~-t~e~L~~~l~~~~~~~~~iL~~~g~~~~-------~~L~~~L~~~G~~V~~~~vY~ 211 (241)
. .+.. +..+.+ ....+++.|.+.. .++++++.+.... .-+.+.++++|.++.....|.
T Consensus 91 -----~------~~~~-V~~d~~~~g~~a~~~l~~~G--~~~i~~l~~~~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~~~ 156 (269)
T cd06281 91 -----G------GADA-VLFDHAAGMRQAVEYLISLG--HRRIALVGGGSNTRPGRERLEGYKAAFAAAGLPPDPALVRL 156 (269)
T ss_pred -----C------CCCE-EEECcHHHHHHHHHHHHHCC--CcEEEEecCccccccHHHHHHHHHHHHHHcCCCCCHHHeec
Confidence 2 2222 223332 3355666666542 4689988775321 235677888887653322332
Q ss_pred eecCCCChHHHH-HHc---CCCCEEEEECC
Q 026235 212 TEPVHHVDQTVL-KQA---LSIPVVAVASP 237 (241)
Q Consensus 212 ~~~~~~~~~~~~-~~l---~~id~IvFtSp 237 (241)
... .....+.. +.+ ..+|+|+.+|-
T Consensus 157 ~~~-~~~~~~~~~~~l~~~~~~~ai~~~~d 185 (269)
T cd06281 157 STP-AASGFDATRALLALPDRPTAIIAGGT 185 (269)
T ss_pred CcH-HHHHHHHHHHHHcCCCCCcEEEEcCc
Confidence 221 11111222 223 35788877654
No 59
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=89.91 E-value=9.2 Score=33.51 Aligned_cols=155 Identities=10% Similarity=0.078 Sum_probs=78.4
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~ 140 (241)
..+.+.++++|+++...+. . .+.+...+.++. -..+|+||+++...-......+.. ..+++++.+|...
T Consensus 76 ~gi~~~~~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~~~~~~l~~--~~~iPvV~i~~~~-- 146 (327)
T PRK10423 76 RGVERSCFERGYSLVLCNT---E--GDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQR--YPSVPTVMMDWAP-- 146 (327)
T ss_pred HHHHHHHHHcCCEEEEEeC---C--CCHHHHHHHHHHHHHcCCCEEEEeCCCcchhhHHHHHh--cCCCCEEEECCcc--
Confidence 3455677888988764322 1 122221222221 257999999875432222222322 1368899998521
Q ss_pred HHHHhhhccCCCCceeecCCCC-CHHHHHHHhhhCCCCccEEEEEccCCCc-------hhHHHHHHhCCCeeeEeeeeee
Q 026235 141 IFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTT 212 (241)
Q Consensus 141 ~L~~~~~~~~~Gi~~~~~p~~~-t~e~L~~~l~~~~~~~~~iL~~~g~~~~-------~~L~~~L~~~G~~V~~~~vY~~ 212 (241)
... +... +..+.. .+..+++.|.+.. .++++++.|.... .-+.+.|++.|..+....++..
T Consensus 147 --~~~------~~~~-v~~d~~~~~~~a~~~L~~~G--~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~~~~~~~~~~~~~ 215 (327)
T PRK10423 147 --FDG------DSDL-IQDNSLLGGDLATQYLIDKG--YTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTG 215 (327)
T ss_pred --CCC------CCCE-EEEChHHHHHHHHHHHHHcC--CCeEEEEeCCccccchHHHHHHHHHHHHHcCCCCCcceEEeC
Confidence 112 2222 233333 3566677776653 4689998765321 2456788888877644333322
Q ss_pred ecCCCCh-HHHHHHc---CCCCEEEEECC
Q 026235 213 EPVHHVD-QTVLKQA---LSIPVVAVASP 237 (241)
Q Consensus 213 ~~~~~~~-~~~~~~l---~~id~IvFtSp 237 (241)
....... ..+.+.+ ..+++|+.++-
T Consensus 216 ~~~~~~~~~~~~~~l~~~~~~~ai~~~~d 244 (327)
T PRK10423 216 DFEFNGGFDAMQQLLALPLRPQAVFTGND 244 (327)
T ss_pred CCChHHHHHHHHHHhcCCCCCCEEEEcCc
Confidence 1111111 1222223 35788877664
No 60
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=89.85 E-value=8.8 Score=35.13 Aligned_cols=153 Identities=16% Similarity=0.079 Sum_probs=86.8
Q ss_pred CCeEEEeCCCC----ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhc-
Q 026235 50 NPKVVVTRERG----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA- 124 (241)
Q Consensus 50 g~~VLitR~~~----~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~- 124 (241)
.++|-+..... ...++.+.|++.|+++..++.... ..++ +..+.+.+..+..++..-..+.+.+++.
T Consensus 152 ~~~vNlig~~~~~~~d~~el~~ll~~~G~~v~~~~~~~~----s~~~----i~~~~~A~~nlv~~~~~g~~~a~~l~~~~ 223 (399)
T cd00316 152 PGSVNLIGGYNLGGGDLRELKRLLEEMGIRVNALFDGGT----TVEE----LRELGNAKLNLVLCRESGLYLARYLEEKY 223 (399)
T ss_pred CCcEEEECCCCCchhhHHHHHHHHHHcCCcEEEEcCCCC----CHHH----HHhhccCcEEEEecHhHHHHHHHHHHHHh
Confidence 34455544332 458899999999999998876622 2222 3355778888888885555666767654
Q ss_pred CCCCcEEEEeCH-HHHHHHHHhhhccCCCCceeecCCC--CCHHHHHHHhhhC--CCCccEEEEEccCCCchhHHHHHHh
Q 026235 125 GTPNVRIGVVGA-GTASIFEEVIQSSKCSLDVAFSPSK--ATGKILASELPKN--GKKKCTVLYPASAKASNEIEEGLSN 199 (241)
Q Consensus 125 ~~~~~~i~aIG~-~Ta~~L~~~~~~~~~Gi~~~~~p~~--~t~e~L~~~l~~~--~~~~~~iL~~~g~~~~~~L~~~L~~ 199 (241)
+.+-+...-+|. .|.+.+++.. ..+|+.. -.++. ..-+.+.+.+... ...|+++++..+....-.+...|.+
T Consensus 224 g~p~~~~~p~G~~~t~~~l~~i~--~~~g~~~-~~~~~i~~~~~~~~~~~~~~~~~l~g~~~~i~~~~~~~~~~~~~l~e 300 (399)
T cd00316 224 GIPYILINPIGLEATDAFLRKLA--ELFGIEK-EVPEVIARERARLLDALADYHEYLGGKKVAIFGDGDLLLALARFLLE 300 (399)
T ss_pred CCCeEEeCCcCHHHHHHHHHHHH--HHhCCCc-chHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCcHHHHHHHHHHH
Confidence 444333335664 4556666551 1125311 01100 0011222233221 1357888776544333457789999
Q ss_pred CCCeeeEeeeeeee
Q 026235 200 RGFEVVRLNTYTTE 213 (241)
Q Consensus 200 ~G~~V~~~~vY~~~ 213 (241)
.|.++..+..+...
T Consensus 301 ~G~~v~~~~~~~~~ 314 (399)
T cd00316 301 LGMEVVAAGTTFGH 314 (399)
T ss_pred CCCEEEEEEeCCCC
Confidence 99998888765433
No 61
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=89.79 E-value=2.8 Score=35.70 Aligned_cols=125 Identities=16% Similarity=0.092 Sum_probs=65.3
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHH--HHHHHHHHHhcCCCCcEEEEeCHHHHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA--GSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~a--V~~f~~~l~~~~~~~~~i~aIG~~Ta~ 140 (241)
..+.+.++++|+++.......- .....+.+...+ -..+|+||+.+.+. +....+.+.+ .+++++.++..-..
T Consensus 19 ~~~~~~a~~~g~~~~~~~~~~~-~~~~~~~i~~l~--~~~vdgiIi~~~~~~~~~~~i~~~~~---~~iPvV~~~~~~~~ 92 (273)
T cd06309 19 KSIKDAAEKRGFDLKFADAQQK-QENQISAIRSFI--AQGVDVIILAPVVETGWDPVLKEAKA---AGIPVILVDRGVDV 92 (273)
T ss_pred HHHHHHHHhcCCEEEEeCCCCC-HHHHHHHHHHHH--HcCCCEEEEcCCccccchHHHHHHHH---CCCCEEEEecCcCC
Confidence 4566778889999987654321 000012233333 25799999977542 2344444443 35788888852110
Q ss_pred HHHHhhhccCCCCceeecCCCC-CHHHHHHHhhhCCCCccEEEEEccCCCc-------hhHHHHHHhC
Q 026235 141 IFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNR 200 (241)
Q Consensus 141 ~L~~~~~~~~~Gi~~~~~p~~~-t~e~L~~~l~~~~~~~~~iL~~~g~~~~-------~~L~~~L~~~ 200 (241)
.... ..-..+..+.+ .+..+++.+.+.....++++++.|.... .-+.+.|+++
T Consensus 93 -~~~~------~~~~~v~~d~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~R~~Gf~~~l~~~ 153 (273)
T cd06309 93 -KDDS------LYVTFIGSDFVEEGRRAADWLAKATGGKGNIVELQGTVGSSVAIDRKKGFAEVIKKY 153 (273)
T ss_pred -ccCc------ceeeEecCChHHHHHHHHHHHHHHcCCCceEEEEeCCCCCchHHHHHHHHHHHHHHC
Confidence 0001 11111233333 2344556666553334689999775432 3356677765
No 62
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=89.66 E-value=11 Score=31.59 Aligned_cols=153 Identities=11% Similarity=0.007 Sum_probs=77.6
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~ 140 (241)
..+.+.++++|+++...... .+.....+.++. -..+|+||+++...-......+ ..+++++.++....
T Consensus 19 ~~i~~~~~~~g~~~~~~~~~-----~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~----~~~ipvv~~~~~~~- 88 (267)
T cd06284 19 KGIEDEAREAGYGVLLGDTR-----SDPEREQEYLDLLRRKQADGIILLDGSLPPTALTAL----AKLPPIVQACEYIP- 88 (267)
T ss_pred HHHHHHHHHcCCeEEEecCC-----CChHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHH----hcCCCEEEEecccC-
Confidence 55667788889888654321 122111222221 2579999997753222222222 13578888864321
Q ss_pred HHHHhhhccCCCCceeecCC-CCCHHHHHHHhhhCCCCccEEEEEccCCCc-------hhHHHHHHhCCCeeeEeeeeee
Q 026235 141 IFEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTT 212 (241)
Q Consensus 141 ~L~~~~~~~~~Gi~~~~~p~-~~t~e~L~~~l~~~~~~~~~iL~~~g~~~~-------~~L~~~L~~~G~~V~~~~vY~~ 212 (241)
.. ++.. +..+ ...+..+++.+.+.. .+++.++.+.... .-+.+.++++|+++.....+..
T Consensus 89 ---~~------~~~~-v~~d~~~~g~~~~~~l~~~g--~~~i~~l~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~ 156 (267)
T cd06284 89 ---GL------AVPS-VSIDNVAAARLAVDHLISLG--HRRIALITGPRDNPLARDRLEGYRQALAEAGLPADEELIQEG 156 (267)
T ss_pred ---CC------Ccce-EEecccHHHHHHHHHHHHcC--CceEEEEcCCccchhHHHHHHHHHHHHHHcCCCCCcceEEeC
Confidence 12 2221 2222 234566677776653 4688888775331 2456678888876554334332
Q ss_pred ecCCCChHHHH-HHc---CCCCEEEEECC
Q 026235 213 EPVHHVDQTVL-KQA---LSIPVVAVASP 237 (241)
Q Consensus 213 ~~~~~~~~~~~-~~l---~~id~IvFtSp 237 (241)
........+.. +.+ ..+|+|+.++.
T Consensus 157 ~~~~~~~~~~~~~~l~~~~~~~ai~~~~~ 185 (267)
T cd06284 157 DFSLESGYAAARRLLALPDRPTAIFCFSD 185 (267)
T ss_pred CCChHHHHHHHHHHHhCCCCCcEEEEcCc
Confidence 22211111222 222 35788877764
No 63
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=89.48 E-value=2.2 Score=39.68 Aligned_cols=162 Identities=9% Similarity=0.045 Sum_probs=91.7
Q ss_pred CeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCCCCcE
Q 026235 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVR 130 (241)
Q Consensus 51 ~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~ 130 (241)
|+|++...-. ...+.|.+.| ++...|-- .. .. + .+.++|.++..|...|..-+ +. .++++
T Consensus 1 mkIl~d~~~~---~~~~~~~~~~-ev~~~~~~---~~--~~---~---~l~daD~liv~s~t~v~~~l--l~---~~~Lk 60 (378)
T PRK15438 1 MKILVDENMP---YARELFSRLG-EVKAVPGR---PI--PV---A---QLADADALMVRSVTKVNESL--LA---GKPIK 60 (378)
T ss_pred CEEEEeCCcc---hHHHHHhhcC-cEEEeCCC---CC--CH---H---HhCCCcEEEEcCCCCCCHHH--hc---CCCCe
Confidence 4677775432 4445666654 77765521 11 11 1 34789999887764443322 21 13455
Q ss_pred EEE-eCHHH----HHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhh----------CCCCccEEEEEccCCCchhHHH
Q 026235 131 IGV-VGAGT----ASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK----------NGKKKCTVLYPASAKASNEIEE 195 (241)
Q Consensus 131 i~a-IG~~T----a~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~----------~~~~~~~iL~~~g~~~~~~L~~ 195 (241)
++. .|-++ .+++.+. |+.+.-.| ..++.+++|.... ....++++.++.-..-...+.+
T Consensus 61 ~I~~~~~G~D~iD~~~~~~~------gI~v~nap-g~na~aVAE~~~~~lL~l~r~~g~~L~gktvGIIG~G~IG~~vA~ 133 (378)
T PRK15438 61 FVGTATAGTDHVDEAWLKQA------GIGFSAAP-GCNAIAVVEYVFSSLLMLAERDGFSLHDRTVGIVGVGNVGRRLQA 133 (378)
T ss_pred EEEECcccccccCHHHHHHC------CCEEEECC-CcCchHHHHHHHHHHHHHhccCCCCcCCCEEEEECcCHHHHHHHH
Confidence 433 22222 3567888 99876555 3455555554321 1236789988866555667999
Q ss_pred HHHhCCCeeeEeeeeeeecCCC-ChHHHHHHcCCCCEEEEECCcc
Q 026235 196 GLSNRGFEVVRLNTYTTEPVHH-VDQTVLKQALSIPVVAVASPSA 239 (241)
Q Consensus 196 ~L~~~G~~V~~~~vY~~~~~~~-~~~~~~~~l~~id~IvFtSps~ 239 (241)
.|+..|.+|..+.-++...... ....+.+.+.+.|+|++..|.+
T Consensus 134 ~l~a~G~~V~~~dp~~~~~~~~~~~~~L~ell~~sDiI~lh~PLt 178 (378)
T PRK15438 134 RLEALGIKTLLCDPPRADRGDEGDFRSLDELVQEADILTFHTPLF 178 (378)
T ss_pred HHHHCCCEEEEECCcccccccccccCCHHHHHhhCCEEEEeCCCC
Confidence 9999998776654433211111 1112233347899999998854
No 64
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=89.45 E-value=5.8 Score=33.14 Aligned_cols=125 Identities=14% Similarity=0.139 Sum_probs=64.7
Q ss_pred HHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHH--HHHHHHHHhcCCCCcEEEEeCHHHHHH
Q 026235 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG--SVFLEAWKEAGTPNVRIGVVGAGTASI 141 (241)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV--~~f~~~l~~~~~~~~~i~aIG~~Ta~~ 141 (241)
.+.+.++++|+++...+.-. .+......+.+.+ . ..+|+||+.+.+.- ......+.+ .+++++++|.....
T Consensus 20 ~~~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~l~-~-~~vdgvi~~~~~~~~~~~~~~~l~~---~~ip~V~~~~~~~~- 92 (267)
T cd01536 20 GAEAAAKELGVELIVLDAQN-DVSKQIQQIEDLI-A-QGVDGIIISPVDSAALTPALKKANA---AGIPVVTVDSDIDG- 92 (267)
T ss_pred HHHHHHHhcCceEEEECCCC-CHHHHHHHHHHHH-H-cCCCEEEEeCCCchhHHHHHHHHHH---CCCcEEEecCCCCc-
Confidence 34456667888777655432 1100012233333 2 47999998765422 223444433 45788888764321
Q ss_pred HHHhhhccCCCCceeecCCC-CCHHHHHHHhhhCCCCccEEEEEccCCC-------chhHHHHHHhCC-Cee
Q 026235 142 FEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRG-FEV 204 (241)
Q Consensus 142 L~~~~~~~~~Gi~~~~~p~~-~t~e~L~~~l~~~~~~~~~iL~~~g~~~-------~~~L~~~L~~~G-~~V 204 (241)
.. ++. .+.++. ..+..+++.+.+...+.+++.++.+... ..-+.+.+++.| .++
T Consensus 93 --~~------~~~-~v~~d~~~~~~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~ 155 (267)
T cd01536 93 --GN------RLA-YVGTDNYEAGRLAGEYLAKLLGGKGKVAIIEGPPGSSNAQERVKGFRDALKEYPDIEI 155 (267)
T ss_pred --cc------eeE-EEecCHHHHHHHHHHHHHHHhCCCceEEEEEcccccchHHHHHHHHHHHHHhCCCcEE
Confidence 11 222 123332 2345566666554223478888866532 134677788774 544
No 65
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=89.38 E-value=6.1 Score=34.99 Aligned_cols=157 Identities=10% Similarity=0.039 Sum_probs=79.5
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHh--cCCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN--ADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~--~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~ 140 (241)
..+.+.++++|+++...+.. .+.+...+.++ ....+|+||+.....-......+.+ ..+++++.++...
T Consensus 79 ~gi~~~~~~~g~~~~~~~~~-----~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~l~~--~~~iPvV~~d~~~-- 149 (341)
T PRK10703 79 EAVEKNCYQKGYTLILCNAW-----NNLEKQRAYLSMLAQKRVDGLLVMCSEYPEPLLAMLEE--YRHIPMVVMDWGE-- 149 (341)
T ss_pred HHHHHHHHHCCCEEEEEeCC-----CCHHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHHh--cCCCCEEEEeccc--
Confidence 34555677889887654321 12221112221 1267999998764322223343433 1357889998432
Q ss_pred HHHHhhhccCCCCceeecCCCC-CHHHHHHHhhhCCCCccEEEEEccCCCc-------hhHHHHHHhCCCeeeEeeeeee
Q 026235 141 IFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTT 212 (241)
Q Consensus 141 ~L~~~~~~~~~Gi~~~~~p~~~-t~e~L~~~l~~~~~~~~~iL~~~g~~~~-------~~L~~~L~~~G~~V~~~~vY~~ 212 (241)
... ++...+.++.. .+...++.|.+.. .++++++.|.... .-+.+.|+++|.++....++..
T Consensus 150 --~~~------~~~~~v~~d~~~~g~~a~~~L~~~G--~~~i~~i~~~~~~~~~~~R~~Gf~~~l~~~gi~~~~~~~~~~ 219 (341)
T PRK10703 150 --AKA------DFTDAIIDNAFEGGYLAGRYLIERG--HRDIGVIPGPLERNTGAGRLAGFMKAMEEANIKVPEEWIVQG 219 (341)
T ss_pred --CCc------CCCCeEEECcHHHHHHHHHHHHHCC--CCcEEEEeCCccccchHHHHHHHHHHHHHcCCCCChHHeEeC
Confidence 112 21111233322 3456677776653 4689988775432 2356678888887654333322
Q ss_pred ecCCCChHHHH-HHc---CCCCEEEEECCc
Q 026235 213 EPVHHVDQTVL-KQA---LSIPVVAVASPS 238 (241)
Q Consensus 213 ~~~~~~~~~~~-~~l---~~id~IvFtSps 238 (241)
........+.. +.+ ..+|+|+.++..
T Consensus 220 ~~~~~~~~~~~~~~l~~~~~~~ai~~~nd~ 249 (341)
T PRK10703 220 DFEPESGYEAMQQILSQKHRPTAVFCGGDI 249 (341)
T ss_pred CCCHHHHHHHHHHHHhCCCCCCEEEECCcH
Confidence 21111111222 223 358888887653
No 66
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=89.36 E-value=8.8 Score=32.41 Aligned_cols=153 Identities=13% Similarity=0.088 Sum_probs=77.1
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHh--cCCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN--ADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~--~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~ 140 (241)
..+.+.++++|+.+...+.. .+.....+.++ .-..+|.||+.+...-......+.+ .+++++++|....
T Consensus 19 ~gi~~~~~~~~~~~~~~~~~-----~~~~~~~~~i~~l~~~~~dgiii~~~~~~~~~~~~~~~---~~iPvv~~~~~~~- 89 (265)
T cd06285 19 EGIEEAAAERGYSTFVANTG-----DNPDAQRRAIEMLLDRRVDGLILGDARSDDHFLDELTR---RGVPFVLVLRHAG- 89 (265)
T ss_pred HHHHHHHHHCCCEEEEEeCC-----CCHHHHHHHHHHHHHcCCCEEEEecCCCChHHHHHHHH---cCCCEEEEccCCC-
Confidence 35566788889876433221 12221122221 1267999998764432222333333 3578999986431
Q ss_pred HHHHhhhccCCCCceeecCCC-CCHHHHHHHhhhCCCCccEEEEEccCCCc-------hhHHHHHHhCCCeeeEeeeeee
Q 026235 141 IFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTT 212 (241)
Q Consensus 141 ~L~~~~~~~~~Gi~~~~~p~~-~t~e~L~~~l~~~~~~~~~iL~~~g~~~~-------~~L~~~L~~~G~~V~~~~vY~~ 212 (241)
.. . .+..+. ..+..+++.|.+.. .+++.++.|.... .-+.+.+++.|.++....++..
T Consensus 90 ---~~------~---~V~~d~~~ag~~a~~~L~~~g--~~~i~~i~~~~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~~~~ 155 (265)
T cd06285 90 ---TS------P---AVTGDDVLGGRLATRHLLDLG--HRRIAVLAGPDYASTARDRLAGFRAALAEAGIEVPPERIVYS 155 (265)
T ss_pred ---CC------C---EEEeCcHHHHHHHHHHHHHCC--CccEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhhEEeC
Confidence 12 1 122232 23455666666553 4688888775432 2355667778876544222222
Q ss_pred ecCCCChHH-HHHHc---CCCCEEEEECCc
Q 026235 213 EPVHHVDQT-VLKQA---LSIPVVAVASPS 238 (241)
Q Consensus 213 ~~~~~~~~~-~~~~l---~~id~IvFtSps 238 (241)
........+ +.+.+ ..+|+|+.++..
T Consensus 156 ~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~ 185 (265)
T cd06285 156 GFDIEGGEAAAEKLLRSDSPPTAIFAVNDF 185 (265)
T ss_pred CCCHHHHHHHHHHHHcCCCCCCEEEEcCcH
Confidence 111111112 22223 357888877654
No 67
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=89.17 E-value=11 Score=31.71 Aligned_cols=154 Identities=14% Similarity=0.166 Sum_probs=76.3
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhc--CCCccEEEEeCH--HHHHHHHHHHHhcCCCCcEEEEeCHHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSP--EAGSVFLEAWKEAGTPNVRIGVVGAGT 138 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~--~aV~~f~~~l~~~~~~~~~i~aIG~~T 138 (241)
..+.+.++++|+++...+. . .+.+...+.++. -..+|+||+.+. +... ....+.. .+++++.++...
T Consensus 19 ~g~~~~a~~~g~~~~~~~~---~--~~~~~~~~~i~~~~~~~vdgiii~~~~~~~~~-~~~~~~~---~~ipvV~~~~~~ 89 (268)
T cd06289 19 AGLEEVLEEAGYTVFLANS---G--EDVERQEQLLSTMLEHGVAGIILCPAAGTSPD-LLKRLAE---SGIPVVLVAREV 89 (268)
T ss_pred HHHHHHHHHcCCeEEEecC---C--CChHHHHHHHHHHHHcCCCEEEEeCCCCccHH-HHHHHHh---cCCCEEEEeccC
Confidence 3455667788887654321 1 122211222221 267899999764 2333 3333433 457888887532
Q ss_pred HHHHHHhhhccCCCCceeecCCC-CCHHHHHHHhhhCCCCccEEEEEccCCCc-------hhHHHHHHhCCCeeeEeeee
Q 026235 139 ASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTY 210 (241)
Q Consensus 139 a~~L~~~~~~~~~Gi~~~~~p~~-~t~e~L~~~l~~~~~~~~~iL~~~g~~~~-------~~L~~~L~~~G~~V~~~~vY 210 (241)
.. . ++.. +..+. ..+..+++.+.+.. .++++++.+.... .-+.+.|++.|.++....++
T Consensus 90 ~~----~------~~~~-v~~d~~~~~~~~~~~l~~~g--~~~i~~l~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~~~~ 156 (268)
T cd06289 90 AG----A------PFDY-VGPDNAAGARLATEHLISLG--HRRIAFIGGLEDSSTRRERLAGYRAALAEAGLPFDSELVV 156 (268)
T ss_pred CC----C------CCCE-EeecchHHHHHHHHHHHHCC--CCCEEEecCCccccchHHHHHHHHHHHHHcCCCCCchhEE
Confidence 11 2 2221 23333 23455566666552 4688888765332 34566777777655443333
Q ss_pred eeecCCCChHH-HHHHc---CCCCEEEEECCc
Q 026235 211 TTEPVHHVDQT-VLKQA---LSIPVVAVASPS 238 (241)
Q Consensus 211 ~~~~~~~~~~~-~~~~l---~~id~IvFtSps 238 (241)
..........+ +.+.+ ..+|+|+.++..
T Consensus 157 ~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~ 188 (268)
T cd06289 157 EGPPSRQGGAEAVAQLLDLPPRPTAIVCFNDL 188 (268)
T ss_pred ecCcchhhHHHHHHHHHcCCCCCCEEEEcCcH
Confidence 22221111122 22223 357888776653
No 68
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=89.16 E-value=5 Score=33.70 Aligned_cols=150 Identities=16% Similarity=0.126 Sum_probs=75.9
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~ 140 (241)
..+.+.++++|+++...+.- .+.+...+.++. ...+|+||+++..........+.+ .+++++.+|....
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~-----~~~~~~~~~i~~l~~~~~dgii~~~~~~~~~~~~~~~~---~~ipvv~~~~~~~- 89 (259)
T cd01542 19 KGILAALYENGYQMLLMNTN-----FSIEKEIEALELLARQKVDGIILLATTITDEHREAIKK---LNVPVVVVGQDYP- 89 (259)
T ss_pred HHHHHHHHHCCCEEEEEeCC-----CCHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhc---CCCCEEEEeccCC-
Confidence 44556778889887654321 122211222221 268999999875433333444433 3588999985421
Q ss_pred HHHHhhhccCCCCceeecCC-CCCHHHHHHHhhhCCCCccEEEEEccCCC--------chhHHHHHHhCCCeeeEeeeee
Q 026235 141 IFEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKKCTVLYPASAKA--------SNEIEEGLSNRGFEVVRLNTYT 211 (241)
Q Consensus 141 ~L~~~~~~~~~Gi~~~~~p~-~~t~e~L~~~l~~~~~~~~~iL~~~g~~~--------~~~L~~~L~~~G~~V~~~~vY~ 211 (241)
.. .. +..+ ......+++.|.+. ..+++.++.+... ..-+.+.+++.|. ....++.
T Consensus 90 ---~~--------~~-v~~d~~~~~~~~~~~l~~~--g~~~i~~v~~~~~~~~~~~~r~~gf~~~~~~~~~--~~~~~~~ 153 (259)
T cd01542 90 ---GI--------SS-VVYDDYGAGYELGEYLAQQ--GHKNIAYLGVSESDIAVGILRKQGYLDALKEHGI--CPPNIVE 153 (259)
T ss_pred ---CC--------CE-EEECcHHHHHHHHHHHHHc--CCCcEEEEcCCcccchhHHHHHHHHHHHHHHcCC--ChHHeee
Confidence 12 11 2223 23345567777664 3478888865321 1235677877776 1222332
Q ss_pred eecCCCChHH-HHHHc-CC-CCEEEEECC
Q 026235 212 TEPVHHVDQT-VLKQA-LS-IPVVAVASP 237 (241)
Q Consensus 212 ~~~~~~~~~~-~~~~l-~~-id~IvFtSp 237 (241)
.........+ +.+.+ .. +|+|+.++-
T Consensus 154 ~~~~~~~~~~~~~~~l~~~~~~~i~~~~d 182 (259)
T cd01542 154 TDFSYESAYEAAQELLEPQPPDAIVCATD 182 (259)
T ss_pred ccCchhhHHHHHHHHhcCCCCCEEEEcCc
Confidence 2211111222 22223 22 788887764
No 69
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=89.01 E-value=7.4 Score=32.83 Aligned_cols=154 Identities=10% Similarity=0.058 Sum_probs=76.0
Q ss_pred HHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHHH
Q 026235 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (241)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~ 141 (241)
.+.+.++++|+++...+ .. .+.+...+.+.. ...+|+||+++...-......+.. ..+++++++|....
T Consensus 20 gi~~~~~~~g~~~~~~~---~~--~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~l~~--~~~ipvV~i~~~~~-- 90 (269)
T cd06275 20 GVEQYCYRQGYNLILCN---TE--GDPERQRSYLRMLAQKRVDGLLVMCSEYDQPLLAMLER--YRHIPMVVMDWGPE-- 90 (269)
T ss_pred HHHHHHHHcCCEEEEEe---CC--CChHHHHHHHHHHHHcCCCEEEEecCCCChHHHHHHHh--cCCCCEEEEecccC--
Confidence 34566777898876432 11 122222222221 257899999875322222222221 24688999986432
Q ss_pred HHHhhhccCCCCceeecCCCC-CHHHHHHHhhhCCCCccEEEEEccCCCc-------hhHHHHHHhCCCeeeEeeeeeee
Q 026235 142 FEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTE 213 (241)
Q Consensus 142 L~~~~~~~~~Gi~~~~~p~~~-t~e~L~~~l~~~~~~~~~iL~~~g~~~~-------~~L~~~L~~~G~~V~~~~vY~~~ 213 (241)
.. ++.. +..+.+ .++.+++.|.+.. .++++++.+.... .-+.+.|++.|.++.....+...
T Consensus 91 --~~------~~~~-V~~d~~~~~~~~~~~l~~~G--~~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~ 159 (269)
T cd06275 91 --DD------FADK-IQDNSEEGGYLATRHLIELG--HRRIGCITGPLEKAPAQQRLAGFRRAMAEAGLPVNPGWIVEGD 159 (269)
T ss_pred --CC------CCCe-EeeCcHHHHHHHHHHHHHCC--CceEEEEeCCCCCccHHHHHHHHHHHHHHcCCCCCHHHhccCC
Confidence 12 2221 222322 3355566666553 4689988765432 23567787888765432222222
Q ss_pred cCCCChHH-HHHHc---CCCCEEEEECC
Q 026235 214 PVHHVDQT-VLKQA---LSIPVVAVASP 237 (241)
Q Consensus 214 ~~~~~~~~-~~~~l---~~id~IvFtSp 237 (241)
.......+ +.+.+ ..+++|+.++.
T Consensus 160 ~~~~~~~~~~~~~l~~~~~~~ai~~~~d 187 (269)
T cd06275 160 FECEGGYEAMQRLLAQPKRPTAVFCGND 187 (269)
T ss_pred CChHHHHHHHHHHHcCCCCCcEEEECCh
Confidence 11111112 22223 25788877664
No 70
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=88.87 E-value=4.1 Score=34.48 Aligned_cols=157 Identities=10% Similarity=0.040 Sum_probs=78.0
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCc-hHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDT-DRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~-~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~ 141 (241)
..+.+.++++|+++.......-. ... +.++..+ -..+|+||+++...-...++.+. ..+++++++|.....
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~--~~~~~~i~~l~--~~~~dgiii~~~~~~~~~~~~~~---~~~ipvV~i~~~~~~- 90 (270)
T cd06296 19 RGVEEAAAAAGYDVVLSESGRRT--SPERQWVERLS--ARRTDGVILVTPELTSAQRAALR---RTGIPFVVVDPAGDP- 90 (270)
T ss_pred HHHHHHHHHcCCeEEEecCCCch--HHHHHHHHHHH--HcCCCEEEEecCCCChHHHHHHh---cCCCCEEEEecccCC-
Confidence 34556777889887655332111 001 1122222 26799999987642222233332 246899999864311
Q ss_pred HHHhhhccCCCCceeecCCCC-CHHHHHHHhhhCCCCccEEEEEccCCCc-------hhHHHHHHhCCCeeeEeeeeeee
Q 026235 142 FEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTE 213 (241)
Q Consensus 142 L~~~~~~~~~Gi~~~~~p~~~-t~e~L~~~l~~~~~~~~~iL~~~g~~~~-------~~L~~~L~~~G~~V~~~~vY~~~ 213 (241)
.. ++. .+.++.+ .++...+.+.+. ..+++.++.|.... .-+.+.|++.|+.+....++...
T Consensus 91 --~~------~~~-~v~~d~~~~~~~a~~~l~~~--g~~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~ 159 (270)
T cd06296 91 --DA------DVP-SVGATNWAGGLAATEHLLEL--GHRRIGFITGPPDLLCSRARLDGYRAALAEAGIPVDPALVREGD 159 (270)
T ss_pred --CC------CCC-EEEeCcHHHHHHHHHHHHHc--CCCcEEEEcCCCcchhHHHHHHHHHHHHHHcCCCCChHHheeCC
Confidence 11 222 1233322 345556666554 24688888775432 23556777777765433333222
Q ss_pred cCCCChHH-HHHHc---CCCCEEEEECCc
Q 026235 214 PVHHVDQT-VLKQA---LSIPVVAVASPS 238 (241)
Q Consensus 214 ~~~~~~~~-~~~~l---~~id~IvFtSps 238 (241)
.......+ +.+.+ ..+++|+..+..
T Consensus 160 ~~~~~~~~~~~~~l~~~~~~~ai~~~~d~ 188 (270)
T cd06296 160 FSTESGFRAAAELLALPERPTAIFAGNDL 188 (270)
T ss_pred CCHHHHHHHHHHHHhCCCCCcEEEEcCcH
Confidence 22111111 22222 357888776643
No 71
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=88.72 E-value=6.5 Score=33.81 Aligned_cols=125 Identities=14% Similarity=0.155 Sum_probs=70.1
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHHHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~L 142 (241)
..+.+.++++|+++...+... +.+.+...+ ...+|+||+++........+.+.. .+++++++|....
T Consensus 24 ~gi~~~a~~~g~~~~~~~~~~-----~~~~~~~~~--~~~~dgiii~~~~~~~~~~~~~~~---~~ipvV~~~~~~~--- 90 (283)
T cd06279 24 AGVAEVLDAAGVNLLLLPASS-----EDSDSALVV--SALVDGFIVYGVPRDDPLVAALLR---RGLPVVVVDQPLP--- 90 (283)
T ss_pred HHHHHHHHHCCCEEEEecCcc-----HHHHHHHHH--hcCCCEEEEeCCCCChHHHHHHHH---cCCCEEEEecCCC---
Confidence 446677888999988776432 112222222 368999999875322223333433 3578888886421
Q ss_pred HHhhhccCCCCceeecCC-CCCHHHHHHHhhhCCCCccEEEEEccCCC------------------------chhHHHHH
Q 026235 143 EEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKKCTVLYPASAKA------------------------SNEIEEGL 197 (241)
Q Consensus 143 ~~~~~~~~~Gi~~~~~p~-~~t~e~L~~~l~~~~~~~~~iL~~~g~~~------------------------~~~L~~~L 197 (241)
. ++.. +..+ ...+..+++.|.+.. .+++.++.+... ..-+.+.+
T Consensus 91 --~------~~~~-v~~d~~~~g~~~~~~L~~~g--~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~gf~~~~ 159 (283)
T cd06279 91 --P------GVPS-VGIDDRAAAREAARHLLDLG--HRRIGILGLRLGRDRNTGRVTDERLASATFSVARERLEGYLEAL 159 (283)
T ss_pred --C------CCCE-EeeCcHHHHHHHHHHHHHcC--CCcEEEecCcccccccccccccccccccccccHHHHHHHHHHHH
Confidence 2 3222 2333 234455666666643 468888866421 12356678
Q ss_pred HhCCCeeeEeeeee
Q 026235 198 SNRGFEVVRLNTYT 211 (241)
Q Consensus 198 ~~~G~~V~~~~vY~ 211 (241)
++.|.+.....+|.
T Consensus 160 ~~~~~~~~~~~~~~ 173 (283)
T cd06279 160 EEAGIDISDVPIWE 173 (283)
T ss_pred HHcCCCCChheEEe
Confidence 88887665544443
No 72
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=87.73 E-value=10 Score=31.92 Aligned_cols=153 Identities=10% Similarity=0.021 Sum_probs=79.0
Q ss_pred HHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHh--cCCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHHH
Q 026235 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN--ADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (241)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~--~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~ 141 (241)
.+.+.++++|+++....... +.+...+.+. .-..+|+|++.+.+.-......+.+ .++++++++....
T Consensus 20 ~~~~~~~~~g~~~~~~~~~~-----~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~---~~ipvV~~~~~~~-- 89 (264)
T cd06274 20 RLEALARERGYQLLIACSDD-----DPETERETVETLIARQVDALIVAGSLPPDDPYYLCQK---AGLPVVALDRPGD-- 89 (264)
T ss_pred HHHHHHHHCCCEEEEEeCCC-----CHHHHHHHHHHHHHcCCCEEEEcCCCCchHHHHHHHh---cCCCEEEecCccC--
Confidence 44566778898887654321 2221122221 1268999998875421111333333 3578999987532
Q ss_pred HHHhhhccCCCCceeecCCCCC-HHHHHHHhhhCCCCccEEEEEccCCCc-------hhHHHHHHhCCCeeeEeeeeeee
Q 026235 142 FEEVIQSSKCSLDVAFSPSKAT-GKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTE 213 (241)
Q Consensus 142 L~~~~~~~~~Gi~~~~~p~~~t-~e~L~~~l~~~~~~~~~iL~~~g~~~~-------~~L~~~L~~~G~~V~~~~vY~~~ 213 (241)
.. ++.. +..+.+. ...+++.+.+. ..++++++.|.... .-+.+.+++.|..+....++...
T Consensus 90 --~~------~~~~-V~~d~~~~g~~~~~~l~~~--g~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~ 158 (264)
T cd06274 90 --PS------RFPS-VVSDNRDGAAELTRELLAA--PPEEVLFLGGLPELSPSRERLAGFRQALADAGLPVQPDWIYAEG 158 (264)
T ss_pred --CC------CCCE-EEEccHHHHHHHHHHHHHC--CCCcEEEEeCCCcccchHHHHHHHHHHHHHcCCCCCcceeecCC
Confidence 22 3222 2334333 35566667664 34689998776432 23566777887665544444332
Q ss_pred cCCCChHHHH-HHc----CCCCEEEEECC
Q 026235 214 PVHHVDQTVL-KQA----LSIPVVAVASP 237 (241)
Q Consensus 214 ~~~~~~~~~~-~~l----~~id~IvFtSp 237 (241)
.......+.. +.+ ..+|+|+..+.
T Consensus 159 ~~~~~~~~~~~~~l~~~~~~~~ai~~~~d 187 (264)
T cd06274 159 YSPESGYQLMAELLARLGRLPRALFTTSY 187 (264)
T ss_pred CChHHHHHHHHHHHccCCCCCcEEEEcCh
Confidence 2221112222 222 23788776653
No 73
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=87.67 E-value=2.1 Score=33.66 Aligned_cols=71 Identities=15% Similarity=0.175 Sum_probs=47.2
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCC-----------CchHHHHHHhcCCCccEEEEeCH-------HHHHHHHHHHH--
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGP-----------DTDRLSSVLNADTIFDWIIITSP-------EAGSVFLEAWK-- 122 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~-----------~~~~l~~~l~~l~~~d~IiFTS~-------~aV~~f~~~l~-- 122 (241)
+.+.+.+++.|+++..+.+-+. +.+ ..+.+.+..+.+...|.|||-|| ..++.|++.+.
T Consensus 21 ~~~~~~l~~~g~e~~~i~l~~~-~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~~sP~y~~~~s~~lK~~lD~~~~~ 99 (152)
T PF03358_consen 21 EAVAEQLEEAGAEVEVIDLADY-PLPCCDGDFECPCYIPDDVQELYDKLKEADGIIFASPVYNGSVSGQLKNFLDRLSCW 99 (152)
T ss_dssp HHHHHHHHHTTEEEEEEECTTS-HCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEEEEEEBTTBE-HHHHHHHHTHHHT
T ss_pred HHHHHHHHHcCCEEEEEecccc-chhhcccccccccCCcHHHHHHHhceecCCeEEEeecEEcCcCChhhhHHHHHhccc
Confidence 4455566677888888766654 111 12344555556678999999996 68899999886
Q ss_pred -hcCCCCcEEEEe
Q 026235 123 -EAGTPNVRIGVV 134 (241)
Q Consensus 123 -~~~~~~~~i~aI 134 (241)
...+.++.++.+
T Consensus 100 ~~~~~~~K~~~~i 112 (152)
T PF03358_consen 100 FRRALRGKPVAII 112 (152)
T ss_dssp HTTTTTTSEEEEE
T ss_pred cccccCCCEEEEE
Confidence 334456666555
No 74
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=87.65 E-value=2.4 Score=35.41 Aligned_cols=69 Identities=16% Similarity=0.102 Sum_probs=44.2
Q ss_pred HHHHHHHHCCCcEEEeceEEEeeC------CCchHHHHHHhcCCCccEEEEeCH-------HHHHHHHHHHHhcCCCCcE
Q 026235 64 KLIKALAKHRIDCLELPLIQHAQG------PDTDRLSSVLNADTIFDWIIITSP-------EAGSVFLEAWKEAGTPNVR 130 (241)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~------~~~~~l~~~l~~l~~~d~IiFTS~-------~aV~~f~~~l~~~~~~~~~ 130 (241)
...+.+.+.|+++..+.+++..+. ...+.+.+..+.+...|.|||-|| ...++|++.+....+.+++
T Consensus 22 ~~~~~l~~~g~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~Y~~s~pg~LKn~iD~l~~~~l~~K~ 101 (191)
T PRK10569 22 YAREWLNGLGVEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLAQADGLIVATPVYKASFSGALKTLLDLLPERALEHKV 101 (191)
T ss_pred HHHHHHHhCCCEEEEEEccCCChHHHHhccCCCHHHHHHHHHHHHCCEEEEECCccCCCCCHHHHHHHHhCChhhhCCCE
Confidence 444556668999998877653221 012355566666788999999998 5778888766433344444
Q ss_pred EE
Q 026235 131 IG 132 (241)
Q Consensus 131 i~ 132 (241)
++
T Consensus 102 v~ 103 (191)
T PRK10569 102 VL 103 (191)
T ss_pred EE
Confidence 44
No 75
>PLN02928 oxidoreductase family protein
Probab=87.62 E-value=8.5 Score=35.20 Aligned_cols=61 Identities=11% Similarity=0.043 Sum_probs=37.5
Q ss_pred CCccEEEEEccCCCchhHHHHHHhCCCeeeEeeeeeeecCCC--------------------ChHHHHHHcCCCCEEEEE
Q 026235 176 KKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHH--------------------VDQTVLKQALSIPVVAVA 235 (241)
Q Consensus 176 ~~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~--------------------~~~~~~~~l~~id~IvFt 235 (241)
..|+++.++.-..-...+.+.|+..|.+|. +|.+..... ....+.+.+.+.|+|+..
T Consensus 157 l~gktvGIiG~G~IG~~vA~~l~afG~~V~---~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~ 233 (347)
T PLN02928 157 LFGKTVFILGYGAIGIELAKRLRPFGVKLL---ATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLC 233 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHhhCCCEEE---EECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEEC
Confidence 356788888665556678899999887664 444321100 011223334788999998
Q ss_pred CCcc
Q 026235 236 SPSA 239 (241)
Q Consensus 236 Sps~ 239 (241)
-|.+
T Consensus 234 lPlt 237 (347)
T PLN02928 234 CTLT 237 (347)
T ss_pred CCCC
Confidence 7754
No 76
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=87.48 E-value=6.7 Score=29.58 Aligned_cols=83 Identities=18% Similarity=0.233 Sum_probs=53.6
Q ss_pred hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCH-----HHHHHHHHHHHhcCCCCcEEEEeCH
Q 026235 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP-----EAGSVFLEAWKEAGTPNVRIGVVGA 136 (241)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~-----~aV~~f~~~l~~~~~~~~~i~aIG~ 136 (241)
..-+...|+..|++|..+... . ..+++.+.+. -.++|.|.+++. ..+..+.+.+++.+.+++++++-|.
T Consensus 16 ~~~~~~~l~~~G~~V~~lg~~--~---~~~~l~~~~~-~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vGG~ 89 (119)
T cd02067 16 KNIVARALRDAGFEVIDLGVD--V---PPEEIVEAAK-EEDADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGGA 89 (119)
T ss_pred HHHHHHHHHHCCCEEEECCCC--C---CHHHHHHHHH-HcCCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEECC
Confidence 445677899999999766522 1 2344555553 368899988875 3344455556555433788888887
Q ss_pred HHHH---HHHHhhhccCCCCcee
Q 026235 137 GTAS---IFEEVIQSSKCSLDVA 156 (241)
Q Consensus 137 ~Ta~---~L~~~~~~~~~Gi~~~ 156 (241)
.... .+++. |+...
T Consensus 90 ~~~~~~~~~~~~------G~D~~ 106 (119)
T cd02067 90 IVTRDFKFLKEI------GVDAY 106 (119)
T ss_pred CCChhHHHHHHc------CCeEE
Confidence 6554 67777 98653
No 77
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=87.21 E-value=16 Score=30.27 Aligned_cols=152 Identities=11% Similarity=0.071 Sum_probs=75.6
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCc----hHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDT----DRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGT 138 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~----~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~T 138 (241)
..+.+.++++|+++...+.- .+. ..++..+ -.++|.|++.....-......+.+ .++++++++...
T Consensus 19 ~g~~~~~~~~g~~~~~~~~~-----~~~~~~~~~~~~~~--~~~~d~iii~~~~~~~~~~~~~~~---~~ipvv~~~~~~ 88 (264)
T cd06267 19 RGIEEAAREAGYSVLLCNSD-----EDPEKEREALELLL--SRRVDGIILAPSRLDDELLEELAA---LGIPVVLVDRPL 88 (264)
T ss_pred HHHHHHHHHcCCEEEEEcCC-----CCHHHHHHHHHHHH--HcCcCEEEEecCCcchHHHHHHHH---cCCCEEEecccc
Confidence 34455666778777654221 121 2233333 258999998766432221333333 467888887653
Q ss_pred HHHHHHhhhccCCCCceeecCCCC-CHHHHHHHhhhCCCCccEEEEEccCCCc-------hhHHHHHHhCCCeeeEeeee
Q 026235 139 ASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTY 210 (241)
Q Consensus 139 a~~L~~~~~~~~~Gi~~~~~p~~~-t~e~L~~~l~~~~~~~~~iL~~~g~~~~-------~~L~~~L~~~G~~V~~~~vY 210 (241)
.. . .+.. +..+.. ..+.+++.+.+. ..++++++.+.... ..+.+.+++.|.++....+.
T Consensus 89 ~~----~------~~~~-v~~d~~~~g~~~~~~l~~~--g~~~i~~i~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~ 155 (264)
T cd06267 89 DG----L------GVDS-VGIDNRAGAYLAVEHLIEL--GHRRIAFIGGPPDLSTARERLEGYREALEEAGIPLDEELIV 155 (264)
T ss_pred cC----C------CCCE-EeeccHHHHHHHHHHHHHC--CCceEEEecCCCccchHHHHHHHHHHHHHHcCCCCCcceEE
Confidence 21 2 2221 223322 234455666554 24688888766441 34567777777554433333
Q ss_pred eeecCCCCh-HHHHHHc---CCCCEEEEECC
Q 026235 211 TTEPVHHVD-QTVLKQA---LSIPVVAVASP 237 (241)
Q Consensus 211 ~~~~~~~~~-~~~~~~l---~~id~IvFtSp 237 (241)
......... ..+.+.+ .++|+|+..+.
T Consensus 156 ~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~ 186 (264)
T cd06267 156 EGDFSEESGYEAARELLASGERPTAIFAAND 186 (264)
T ss_pred ecccchhhHHHHHHHHHhcCCCCcEEEEcCc
Confidence 222211111 2222223 34888776653
No 78
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=87.14 E-value=17 Score=31.86 Aligned_cols=120 Identities=13% Similarity=0.098 Sum_probs=64.8
Q ss_pred HHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHh--cCCCccEEEEeCHHH-HHHHHHHHHhcCCCCcEEEEeCHHHHH
Q 026235 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN--ADTIFDWIIITSPEA-GSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (241)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~--~l~~~d~IiFTS~~a-V~~f~~~l~~~~~~~~~i~aIG~~Ta~ 140 (241)
.+.+.++++|+++...... .+.+...+.++ .-..+|.||+.+... ...+...+.+ .+++++++|...
T Consensus 82 gi~~~~~~~g~~~~~~~~~-----~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~l~~---~~iPvV~v~~~~-- 151 (328)
T PRK11303 82 YLERQARQRGYQLLIACSD-----DQPDNEMRCAEHLLQRQVDALIVSTSLPPEHPFYQRLQN---DGLPIIALDRAL-- 151 (328)
T ss_pred HHHHHHHHcCCEEEEEeCC-----CCHHHHHHHHHHHHHcCCCEEEEcCCCCCChHHHHHHHh---cCCCEEEECCCC--
Confidence 4555677789887654221 12111112221 125799999975421 1223333333 357899998642
Q ss_pred HHHHhhhccCCCCceeecCCC-CCHHHHHHHhhhCCCCccEEEEEccCCCc-------hhHHHHHHhCCCee
Q 026235 141 IFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEV 204 (241)
Q Consensus 141 ~L~~~~~~~~~Gi~~~~~p~~-~t~e~L~~~l~~~~~~~~~iL~~~g~~~~-------~~L~~~L~~~G~~V 204 (241)
... ++.. +..+. ..+..+++.|.+.. .++|+++.+.... .-+.+.|+++|..+
T Consensus 152 --~~~------~~~~-V~~d~~~~~~~a~~~L~~~G--~r~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~ 212 (328)
T PRK11303 152 --DRE------HFTS-VVSDDQDDAEMLAESLLKFP--AESILLLGALPELSVSFEREQGFRQALKDDPREV 212 (328)
T ss_pred --CCC------CCCE-EEeCCHHHHHHHHHHHHHCC--CCeEEEEeCccccccHHHHHHHHHHHHHHcCCCc
Confidence 123 3333 33333 33455666676653 4789999765321 34567888888754
No 79
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=86.86 E-value=6.6 Score=32.94 Aligned_cols=121 Identities=17% Similarity=0.208 Sum_probs=65.9
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCc-hHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDT-DRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~-~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~ 141 (241)
..+.+.++++|+.+.....-.- .+. +.++..+ -..+|.||+.+...-....+.+.+ .+++++.+|..+..
T Consensus 19 ~~i~~~~~~~g~~~~~~~~~~~---~~~~~~i~~~~--~~~vdgiii~~~~~~~~~~~~~~~---~~ipvV~~~~~~~~- 89 (266)
T cd06278 19 EALSRALQARGYQPLLINTDDD---EDLDAALRQLL--QYRVDGVIVTSGTLSSELAEECRR---NGIPVVLINRYVDG- 89 (266)
T ss_pred HHHHHHHHHCCCeEEEEcCCCC---HHHHHHHHHHH--HcCCCEEEEecCCCCHHHHHHHhh---cCCCEEEECCccCC-
Confidence 3456778889988875543210 011 1222333 267999999764322222333333 46889999865321
Q ss_pred HHHhhhccCCCCceeecCCC-CCHHHHHHHhhhCCCCccEEEEEccCCCc-------hhHHHHHHhCCCee
Q 026235 142 FEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEV 204 (241)
Q Consensus 142 L~~~~~~~~~Gi~~~~~p~~-~t~e~L~~~l~~~~~~~~~iL~~~g~~~~-------~~L~~~L~~~G~~V 204 (241)
. .+.. +..+. ..+..+++.+.+. ..++++++.+.... .-+.+.+++.|.++
T Consensus 90 ---~------~~~~-v~~d~~~~g~~~~~~l~~~--g~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~ 148 (266)
T cd06278 90 ---P------GVDA-VCSDNYEAGRLAAELLLAK--GCRRIAFIGGPADTSTSRERERGFRDALAAAGVPV 148 (266)
T ss_pred ---C------CCCE-EEEChHHHHHHHHHHHHHC--CCceEEEEcCCCcccchHHHHHHHHHHHHHcCCCh
Confidence 2 2221 22332 2345556666654 24689999876442 23566777777663
No 80
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=86.85 E-value=18 Score=30.67 Aligned_cols=154 Identities=12% Similarity=0.064 Sum_probs=78.1
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCC--chHHHHHHhcCCCccEEEEeCHHH-----HHHHHHHHHhcCCCCcEEEEeC
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLNADTIFDWIIITSPEA-----GSVFLEAWKEAGTPNVRIGVVG 135 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~--~~~l~~~l~~l~~~d~IiFTS~~a-----V~~f~~~l~~~~~~~~~i~aIG 135 (241)
..+.+.++++|+.+..... ....+ .+.++..+ . ..+|+||+++... ...+...+.+ .+++++.+|
T Consensus 19 ~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~i~~l~-~-~~vdgii~~~~~~~~~~~~~~~~~~~~~---~~ipvV~~~ 90 (273)
T cd01541 19 RGIESVLSEKGYSLLLAST---NNDPERERKCLENML-S-QGIDGLIIEPTKSALPNPNIDLYLKLEK---LGIPYVFIN 90 (273)
T ss_pred HHHHHHHHHcCCEEEEEeC---CCCHHHHHHHHHHHH-H-cCCCEEEEeccccccccccHHHHHHHHH---CCCCEEEEe
Confidence 3456678888988875432 11111 12233333 2 6899999976432 2233333333 357899998
Q ss_pred HHHHHHHHHhhhccCCCCceeecCCCC-CHHHHHHHhhhCCCCccEEEEEccCCCc------hhHHHHHHhCCCeeeEee
Q 026235 136 AGTASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS------NEIEEGLSNRGFEVVRLN 208 (241)
Q Consensus 136 ~~Ta~~L~~~~~~~~~Gi~~~~~p~~~-t~e~L~~~l~~~~~~~~~iL~~~g~~~~------~~L~~~L~~~G~~V~~~~ 208 (241)
... ... ++.. +..+.+ ....+++.|.+.. .++++++.+.... .-+.+.|++.|.++....
T Consensus 91 ~~~----~~~------~~~~-V~~D~~~~g~~~~~~l~~~G--~~~i~~l~~~~~~~~~~r~~g~~~~l~~~~~~~~~~~ 157 (273)
T cd01541 91 ASY----EEL------NFPS-LVLDDEKGGYKATEYLIELG--HRKIAGIFKADDLQGVKRMKGFIKAYREHGIPFNPSN 157 (273)
T ss_pred cCC----CCC------CCCE-EEECcHHHHHHHHHHHHHcC--CcCEEEecCCCcccHHHHHHHHHHHHHHcCCCCChHH
Confidence 542 112 2222 333333 3466667776653 3678777553221 235677888887654433
Q ss_pred eeeeecCC--CChHH-HHHHc---CCCCEEEEECC
Q 026235 209 TYTTEPVH--HVDQT-VLKQA---LSIPVVAVASP 237 (241)
Q Consensus 209 vY~~~~~~--~~~~~-~~~~l---~~id~IvFtSp 237 (241)
++...... ....+ +.+.+ ..+|+|+.+|-
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~av~~~~d 192 (273)
T cd01541 158 VITYTTEEKEEKLFEKIKEILKRPERPTAIVCYND 192 (273)
T ss_pred EEeccccchhhHHHHHHHHHHcCCCCCCEEEEcCc
Confidence 33221111 11112 22223 35898887764
No 81
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=86.45 E-value=12 Score=31.35 Aligned_cols=152 Identities=13% Similarity=0.063 Sum_probs=76.9
Q ss_pred HHHHHHHHCCCcEEEeceEEEeeCCCc--hHHHHHHhcCCCccEEEEeCHHH-HHHHHHHHHhcCCCCcEEEEeCHHHHH
Q 026235 64 KLIKALAKHRIDCLELPLIQHAQGPDT--DRLSSVLNADTIFDWIIITSPEA-GSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (241)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~--~~l~~~l~~l~~~d~IiFTS~~a-V~~f~~~l~~~~~~~~~i~aIG~~Ta~ 140 (241)
.+.+.++++|+.+...+. ...... ..+...+ . ..+|+||+.+.+. ...+++.+.+ .+++++.++....
T Consensus 20 ~i~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~-~-~~vdgiii~~~~~~~~~~~~~~~~---~~ipvV~~~~~~~- 90 (266)
T cd06282 20 GIQEEARAAGYSLLLATT---DYDAEREADAVETLL-R-QRVDGLILTVADAATSPALDLLDA---ERVPYVLAYNDPQ- 90 (266)
T ss_pred HHHHHHHHCCCEEEEeeC---CCCHHHHHHHHHHHH-h-cCCCEEEEecCCCCchHHHHHHhh---CCCCEEEEeccCC-
Confidence 455677888988886543 111111 1222222 2 5799999976542 1224444443 3577888864321
Q ss_pred HHHHhhhccCCCCceeecCCC-CCHHHHHHHhhhCCCCccEEEEEccCCC-c-------hhHHHHHHhCCCeeeEeeeee
Q 026235 141 IFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-S-------NEIEEGLSNRGFEVVRLNTYT 211 (241)
Q Consensus 141 ~L~~~~~~~~~Gi~~~~~p~~-~t~e~L~~~l~~~~~~~~~iL~~~g~~~-~-------~~L~~~L~~~G~~V~~~~vY~ 211 (241)
. ++.. +..+. ..+..+++.|.+. ..+++.++.|... . .-+.+.|+++|.++.....+.
T Consensus 91 ----~------~~~~-v~~d~~~~g~~~~~~l~~~--g~~~i~~i~~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~~~~~ 157 (266)
T cd06282 91 ----P------GRPS-VSVDNRAAARDVAQALAAL--GHRRIAMLAGRLAASDRARQRYAGYRAAMRAAGLAPLPPVEIP 157 (266)
T ss_pred ----C------CCCE-EeeCcHHHHHHHHHHHHHc--CcccEEEeccccccCchHHHHHHHHHHHHHHcCCCCCccccCC
Confidence 2 3221 23333 2345566666664 2468888865421 1 234567778887654432221
Q ss_pred eecCCCChHHHHHHc---CCCCEEEEECCc
Q 026235 212 TEPVHHVDQTVLKQA---LSIPVVAVASPS 238 (241)
Q Consensus 212 ~~~~~~~~~~~~~~l---~~id~IvFtSps 238 (241)
.. .......+.+.+ ..+|+|+.++..
T Consensus 158 ~~-~~~~~~~~~~~l~~~~~~~ai~~~~d~ 186 (266)
T cd06282 158 FN-TAALPSALLALLTAHPAPTAIFCSNDL 186 (266)
T ss_pred Cc-HHHHHHHHHHHhcCCCCCCEEEECCcH
Confidence 11 111112222223 357888887653
No 82
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=86.13 E-value=8.3 Score=33.04 Aligned_cols=125 Identities=10% Similarity=0.033 Sum_probs=65.0
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCH--HHHHHHHHHHHhcCCCCcEEEEeCHHHHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP--EAGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~--~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~ 140 (241)
..+.+.++++|+++....... .+....+.+...+ ...+|.||+.+. .........+.+ .+++++.++.....
T Consensus 19 ~gi~~~~~~~G~~~~~~~~~~-d~~~~~~~i~~~~--~~~vdgiii~~~~~~~~~~~i~~~~~---~~iPvV~~~~~~~~ 92 (272)
T cd06313 19 QAADEAGKLLGVDVTWYGGAL-DAVKQVAAIENMA--SQGWDFIAVDPLGIGTLTEAVQKAIA---RGIPVIDMGTLIAP 92 (272)
T ss_pred HHHHHHHHHcCCEEEEecCCC-CHHHHHHHHHHHH--HcCCCEEEEcCCChHHhHHHHHHHHH---CCCcEEEeCCCCCC
Confidence 446667788998888653221 0000012233332 267999999753 222333333333 36889999864321
Q ss_pred HHHHhhhccCCCCceeecCCCC-CHHHHHHHhhhCCCCccEEEEEccCCCc-------hhHHHHHHhCC
Q 026235 141 IFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRG 201 (241)
Q Consensus 141 ~L~~~~~~~~~Gi~~~~~p~~~-t~e~L~~~l~~~~~~~~~iL~~~g~~~~-------~~L~~~L~~~G 201 (241)
. .. +....+..+.+ ..+.+++.|.+.....++++++.|.... .-+.+.|+++|
T Consensus 93 ~--~~------~~~~~v~~d~~~~g~~~~~~l~~~~~g~~~i~~l~g~~~~~~~~~R~~gf~~~~~~~~ 153 (272)
T cd06313 93 L--QI------NVHSFLAPDNYFMGASVAQALCNAMGGKGKIAMLQGALGHTGAQGRAQGFNDVIKKYP 153 (272)
T ss_pred C--CC------ceEEEECCCcHHHHHHHHHHHHHHcCCCceEEEEECCCCCcchhHHHHHHHHHHHhCC
Confidence 0 12 21111233333 3455666666553334689999775332 34566777765
No 83
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=85.89 E-value=6.1 Score=33.62 Aligned_cols=126 Identities=12% Similarity=0.057 Sum_probs=63.3
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHh--cCCCccEEEEeCHH--HHHHHHHHHHhcCCCCcEEEEeCHHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN--ADTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGT 138 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~--~l~~~d~IiFTS~~--aV~~f~~~l~~~~~~~~~i~aIG~~T 138 (241)
..+.+.++++|+.+..... . ..+.+...+.+. ....+|.+|+.+.. +..-....+. . +++++.+|...
T Consensus 18 ~gi~~~~~~~g~~~~~~~~---~-~~~~~~~~~~i~~l~~~~vDgiIi~~~~~~~~~~~l~~~~---~-~ipvV~~~~~~ 89 (271)
T cd06314 18 AGVKAAGKELGVDVEFVVP---Q-QGTVNAQLRMLEDLIAEGVDGIAISPIDPKAVIPALNKAA---A-GIKLITTDSDA 89 (271)
T ss_pred HHHHHHHHHcCCeEEEeCC---C-CCCHHHHHHHHHHHHhcCCCEEEEecCChhHhHHHHHHHh---c-CCCEEEecCCC
Confidence 3455677888988775521 1 012111122222 12689999997643 2222333332 2 57899998532
Q ss_pred HHHHHHhhhccCCCCceeecCCCC-CHHHHHHHhhhCCCCccEEEEEccCCCc-------hhHHHHHHhCCCeeeE
Q 026235 139 ASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVR 206 (241)
Q Consensus 139 a~~L~~~~~~~~~Gi~~~~~p~~~-t~e~L~~~l~~~~~~~~~iL~~~g~~~~-------~~L~~~L~~~G~~V~~ 206 (241)
.. . .....+..+.. .+..+++.|.+....+.+++++.|.... .-+.+.|++.|.++..
T Consensus 90 ~~----~------~~~~~V~~D~~~~g~~a~~~l~~~~~~g~~~~~~~~~~~~~~~~~R~~gf~~~~~~~~~~~~~ 155 (271)
T cd06314 90 PD----S------GRYVYIGTDNYAAGRTAGEIMKKALPGGGKVAIFVGSLGADNAKERIQGIKDAIKDSKIEIVD 155 (271)
T ss_pred Cc----c------ceeEEEccChHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCCHHHHHHHHHHHHhcCCcEEEE
Confidence 11 1 10111222322 3355566665543234566666665322 2367778888876544
No 84
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=85.77 E-value=12 Score=31.39 Aligned_cols=123 Identities=12% Similarity=0.074 Sum_probs=65.8
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCc-hHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDT-DRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~-~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~ 141 (241)
..+.+.++++|+.+.....-.- ..... ..++..+ -..+|+||+.+...-........ ..+++++++|....
T Consensus 19 ~gi~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~--~~~vdgiii~~~~~~~~~~~~~~---~~~ipvv~~~~~~~-- 90 (264)
T cd01574 19 AAIESAAREAGYAVTLSMLAEA-DEEALRAAVRRLL--AQRVDGVIVNAPLDDADAALAAA---PADVPVVFVDGSPS-- 90 (264)
T ss_pred HHHHHHHHHCCCeEEEEeCCCC-chHHHHHHHHHHH--hcCCCEEEEeCCCCChHHHHHHH---hcCCCEEEEeccCC--
Confidence 4466677888888765422110 00111 1122222 25799999877543221122222 24688999986532
Q ss_pred HHHhhhccCCCCceeecCCC-CCHHHHHHHhhhCCCCccEEEEEccCCCc-------hhHHHHHHhCCCeee
Q 026235 142 FEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVV 205 (241)
Q Consensus 142 L~~~~~~~~~Gi~~~~~p~~-~t~e~L~~~l~~~~~~~~~iL~~~g~~~~-------~~L~~~L~~~G~~V~ 205 (241)
. ++.. +..+. ..+..+++.|.+. ..++++++.+.... .-+.+.|++.|.++.
T Consensus 91 ---~------~~~~-v~~d~~~~g~~~~~~l~~~--g~~~i~~i~~~~~~~~~~~r~~gf~~~l~~~~~~~~ 150 (264)
T cd01574 91 ---P------RVST-VSVDQEGGARLATEHLLEL--GHRTIAHVAGPEEWLSARARLAGWRAALEAAGIAPP 150 (264)
T ss_pred ---C------CCCE-EEeCcHHHHHHHHHHHHHC--CCCEEEEEecCCccchHHHHHHHHHHHHHHCCCCcc
Confidence 2 2222 23332 3445666677664 34789999776442 236667777777654
No 85
>cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.
Probab=85.70 E-value=12 Score=31.77 Aligned_cols=160 Identities=12% Similarity=-0.012 Sum_probs=74.8
Q ss_pred HHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcC-CCccEEEEeCHHH--HHHHHHHHHhcCCCCcEEEEeCHHHHH
Q 026235 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD-TIFDWIIITSPEA--GSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (241)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l-~~~d~IiFTS~~a--V~~f~~~l~~~~~~~~~i~aIG~~Ta~ 140 (241)
.+.+.++++|.....+....... .+.+...+.+..+ ..+|.||+.+.+. ...+.+.+.+ .+++++.++.....
T Consensus 20 ~i~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~vdgiii~~~~~~~~~~~i~~~~~---~~ipvV~~~~~~~~ 95 (275)
T cd06307 20 ALEAAAAAFPDARIRVRIHFVES-FDPAALAAALLRLGARSDGVALVAPDHPQVRAAVARLAA---AGVPVVTLVSDLPG 95 (275)
T ss_pred HHHHHHhhhhccCceEEEEEccC-CCHHHHHHHHHHHHhcCCEEEEeCCCcHHHHHHHHHHHH---CCCcEEEEeCCCCC
Confidence 34456667776655443332221 1222222233211 2799999988653 2334454444 35788888754211
Q ss_pred HHHHhhhccCCCCceeecCCCCC-HHHHHHHhhhC-CCCccEEEEEccCCCc-------hhHHHHHHhCCCeeeEeeeee
Q 026235 141 IFEEVIQSSKCSLDVAFSPSKAT-GKILASELPKN-GKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYT 211 (241)
Q Consensus 141 ~L~~~~~~~~~Gi~~~~~p~~~t-~e~L~~~l~~~-~~~~~~iL~~~g~~~~-------~~L~~~L~~~G~~V~~~~vY~ 211 (241)
.. .+. .+..+.+. .....+.|.+. ..++++++++.|.... .-+.+.|+++|..+.....+.
T Consensus 96 ---~~------~~~-~V~~d~~~~g~~~~~~l~~~~g~~~~~i~~i~~~~~~~~~~~R~~gf~~a~~~~~~~~~~~~~~~ 165 (275)
T cd06307 96 ---SP------RAG-YVGIDNRAAGRTAAWLIGRFLGRRPGKVAVLAGSHRFRGHEEREMGFRSVLREEFPGLRVLETLE 165 (275)
T ss_pred ---Cc------eee-EEccChHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCcchHHHHHHHHHHHHhhCCCcEEEeecc
Confidence 01 111 12223222 34445556554 2234689988775321 235556776766554333322
Q ss_pred eecCCCChHHHH-HHc---CCCCEEEEECC
Q 026235 212 TEPVHHVDQTVL-KQA---LSIPVVAVASP 237 (241)
Q Consensus 212 ~~~~~~~~~~~~-~~l---~~id~IvFtSp 237 (241)
.........+.. +.+ ..+|+|+.++.
T Consensus 166 ~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d 195 (275)
T cd06307 166 GLDDPARAYEATRKLLARHPDLVGIYNAGG 195 (275)
T ss_pred CCCChHHHHHHHHHHHHhCCCceEEEECCC
Confidence 221111111222 222 35788766654
No 86
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=85.65 E-value=8.7 Score=33.50 Aligned_cols=123 Identities=11% Similarity=0.137 Sum_probs=64.2
Q ss_pred HHHHHHHHHCCCcEEEe-ceEEEeeCCCchHHHHHHhc--CCCccEEEEeCHH--HHHHHHHHHHhcCCCCcEEEEeCHH
Q 026235 63 GKLIKALAKHRIDCLEL-PLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAG 137 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~-P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~--aV~~f~~~l~~~~~~~~~i~aIG~~ 137 (241)
..+.+.++++|+++..+ +.. .+.+...+.++. ...+|.||+++.. ++...++.+.+ .+++++.++..
T Consensus 19 ~gi~~~a~~~g~~v~~~~~~~-----~d~~~~~~~i~~~~~~~~DgiIi~~~~~~~~~~~~~~~~~---~~iPvV~v~~~ 90 (298)
T cd06302 19 EGAKEAAKELGVDAIYVGPTT-----ADAAGQVQIIEDLIAQGVDAIAVVPNDPDALEPVLKKARE---AGIKVVTHDSD 90 (298)
T ss_pred HHHHHHHHHhCCeEEEECCCC-----CCHHHHHHHHHHHHhcCCCEEEEecCCHHHHHHHHHHHHH---CCCeEEEEcCC
Confidence 34556777889887753 322 122222222322 2578999998643 33444444433 36788888743
Q ss_pred HHHHHHHhhhccCCCCceeecCCCC-CHHHHHHHhhhCCCCccEEEEEccCCCc-------hhHHHHHHhCCC
Q 026235 138 TASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGF 202 (241)
Q Consensus 138 Ta~~L~~~~~~~~~Gi~~~~~p~~~-t~e~L~~~l~~~~~~~~~iL~~~g~~~~-------~~L~~~L~~~G~ 202 (241)
... ... ++.+ ...+.. ....+++.|.+.....++++++.+.... .-+.+.|+++|.
T Consensus 91 ~~~--~~~------~~~~-v~~D~~~~g~~a~~~l~~~~~~~~~I~~l~g~~~~~~~~~R~~Gf~~~l~~~g~ 154 (298)
T cd06302 91 VQP--DNR------DYDI-EQADNKAIGETLMDSLAEQMGGKGEYAIFVGSLTATNQNAWIDAAKAYQKEKYY 154 (298)
T ss_pred CCC--Ccc------eeEE-eccCHHHHHHHHHHHHHHHcCCCCEEEEEeCCCCCcchHHHHHHHHHHHhhcCC
Confidence 211 001 1211 223322 3355566666653223589988774432 345677888773
No 87
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=85.64 E-value=16 Score=31.54 Aligned_cols=141 Identities=19% Similarity=0.287 Sum_probs=88.2
Q ss_pred HHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcC-CCccEE-----EEeCHHHHHHHHHHHHhcCC---CCcEEEEeC
Q 026235 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD-TIFDWI-----IITSPEAGSVFLEAWKEAGT---PNVRIGVVG 135 (241)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l-~~~d~I-----iFTS~~aV~~f~~~l~~~~~---~~~~i~aIG 135 (241)
.-..|+++|++=..+..+.+.|..+.+.+....+.+ .+++-+ +..|.+--+.+.+.+.+.-. .+-.++-+|
T Consensus 65 aL~klk~~gy~eviiQ~lhiIpG~EyEklvr~V~~~~~dF~~lkig~PlLy~k~DYe~~v~aik~~~ppl~k~e~~vlmg 144 (265)
T COG4822 65 ALNKLKDQGYEEVIIQPLHIIPGIEYEKLVREVNKYSNDFKRLKIGRPLLYYKNDYEICVEAIKDQIPPLNKDEILVLMG 144 (265)
T ss_pred HHHHHHHccchheeeeeeeecCchHHHHHHHHHHHHhhhhheeecCCceeechhhHHHHHHHHHHhcCCcCcCeEEEEEe
Confidence 345678889876666666666654444333322211 334443 45677888888887766432 344556677
Q ss_pred HHHHH-----------HHHHhhhccCCCCceeecCC---CCCHHHHHHHhhhCCCCc---cEEEEEccCCCchhHH----
Q 026235 136 AGTAS-----------IFEEVIQSSKCSLDVAFSPS---KATGKILASELPKNGKKK---CTVLYPASAKASNEIE---- 194 (241)
Q Consensus 136 ~~Ta~-----------~L~~~~~~~~~Gi~~~~~p~---~~t~e~L~~~l~~~~~~~---~~iL~~~g~~~~~~L~---- 194 (241)
.+|.. .+.++ |+.+.++.. =+..+.+++.|.++..++ -+++++.|+.+-+++.
T Consensus 145 HGt~h~s~~~YacLd~~~~~~------~f~~v~v~~ve~yP~~d~vi~~l~~~~~~~v~L~PlMlvAG~Ha~nDMasdde 218 (265)
T COG4822 145 HGTDHHSNAAYACLDHVLDEY------GFDNVFVAAVEGYPLVDTVIEYLRKNGIKEVHLIPLMLVAGDHAKNDMASDDE 218 (265)
T ss_pred cCCCccHHHHHHHHHHHHHhc------CCCceEEEEecCCCcHHHHHHHHHHcCCceEEEeeeEEeechhhhhhhcccch
Confidence 66532 24566 886655542 246788999998775332 2678888988776665
Q ss_pred ----HHHHhCCCeeeEeeeeeeec
Q 026235 195 ----EGLSNRGFEVVRLNTYTTEP 214 (241)
Q Consensus 195 ----~~L~~~G~~V~~~~vY~~~~ 214 (241)
+.|+++|++| .+|..-.
T Consensus 219 dswk~il~~~G~~v---~~~l~GL 239 (265)
T COG4822 219 DSWKNILEKNGFKV---EVYLHGL 239 (265)
T ss_pred HHHHHHHHhCCcee---EEEeecC
Confidence 7899999888 5565543
No 88
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=85.33 E-value=12 Score=31.40 Aligned_cols=153 Identities=11% Similarity=0.054 Sum_probs=76.7
Q ss_pred HHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHHH
Q 026235 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (241)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~ 141 (241)
.+.+.++++|+.+...+.. .+.+...+.++. -..+|.||+.+...-......+ ..+++++.+|...
T Consensus 20 gi~~~~~~~gy~~~~~~~~-----~~~~~~~~~i~~l~~~~~dgiii~~~~~~~~~~~~~----~~~iPvV~i~~~~--- 87 (265)
T cd06290 20 GMERGLNGSGYSPIIATGH-----WNQSRELEALELLKSRRVDALILLGGDLPEEEILAL----AEEIPVLAVGRRV--- 87 (265)
T ss_pred HHHHHHHHCCCEEEEEeCC-----CCHHHHHHHHHHHHHCCCCEEEEeCCCCChHHHHHH----hcCCCEEEECCCc---
Confidence 4456778889887765431 122222222221 2579999988643222222222 1358899998642
Q ss_pred HHHhhhccCCCCceeecCCC-CCHHHHHHHhhhCCCCccEEEEEccCCCc-------hhHHHHHHhCCCeeeEeeeeeee
Q 026235 142 FEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTE 213 (241)
Q Consensus 142 L~~~~~~~~~Gi~~~~~p~~-~t~e~L~~~l~~~~~~~~~iL~~~g~~~~-------~~L~~~L~~~G~~V~~~~vY~~~ 213 (241)
... ++.. +..+. .....+++.|.+.. .+++.++.+.... .-+.+.+.+.|..+....++...
T Consensus 88 -~~~------~~~~-V~~d~~~a~~~~~~~l~~~g--~~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~ 157 (265)
T cd06290 88 -PGP------GAAS-IAVDNFQGGYLATQHLIDLG--HRRIAHITGPRGHIDARDRLAGYRKALEEAGLEVQPDLIVQGD 157 (265)
T ss_pred -CCC------CCCE-EEECcHHHHHHHHHHHHHCC--CCeEEEEeCccccchhhHHHHHHHHHHHHcCCCCCHHHEEecC
Confidence 122 3322 22332 23455666676653 4688888775432 23455667777665433222221
Q ss_pred cCCCCh-HHHHHHc---CCCCEEEEECCc
Q 026235 214 PVHHVD-QTVLKQA---LSIPVVAVASPS 238 (241)
Q Consensus 214 ~~~~~~-~~~~~~l---~~id~IvFtSps 238 (241)
...... ..+.+.+ ..+|+|+.++..
T Consensus 158 ~~~~~~~~~~~~~l~~~~~~~aii~~~~~ 186 (265)
T cd06290 158 FEEESGLEAVEELLQRGPDFTAIFAANDQ 186 (265)
T ss_pred CCHHHHHHHHHHHHcCCCCCCEEEEcCcH
Confidence 111111 1222223 357888877653
No 89
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=85.31 E-value=22 Score=30.17 Aligned_cols=121 Identities=13% Similarity=0.101 Sum_probs=63.4
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCch----HHHHHHhcCCCccEEEEeCHH--HHHHHHHHHHhcCCCCcEEEEeCH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTD----RLSSVLNADTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGA 136 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~----~l~~~l~~l~~~d~IiFTS~~--aV~~f~~~l~~~~~~~~~i~aIG~ 136 (241)
..+.+.++++|+++..... ..+.+ .++..+ ...+|+||+++.. ++....+.+.+ .+++++++|.
T Consensus 19 ~~i~~~~~~~g~~v~~~~~-----~~~~~~~~~~i~~~~--~~~~Dgiii~~~~~~~~~~~i~~~~~---~~iPvV~~~~ 88 (282)
T cd06318 19 EAAKAHAKALGYELISTDA-----QGDLTKQIADVEDLL--TRGVNVLIINPVDPEGLVPAVAAAKA---AGVPVVVVDS 88 (282)
T ss_pred HHHHHHHHHcCCEEEEEcC-----CCCHHHHHHHHHHHH--HcCCCEEEEecCCccchHHHHHHHHH---CCCCEEEecC
Confidence 4456677889988764322 11221 233332 2679999997632 32333343433 4688999985
Q ss_pred HHHHHHHHhhhccCCCCceeecCCCC-CHHHHHHHhhh-CCCCccEEEEEccCCCc-------hhHHHHHHhCCC
Q 026235 137 GTASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPK-NGKKKCTVLYPASAKAS-------NEIEEGLSNRGF 202 (241)
Q Consensus 137 ~Ta~~L~~~~~~~~~Gi~~~~~p~~~-t~e~L~~~l~~-~~~~~~~iL~~~g~~~~-------~~L~~~L~~~G~ 202 (241)
...... . .+. .+..+.+ ....+++.|.+ ...++++++++.|.... .-+.+.|+++|.
T Consensus 89 ~~~~~~--~------~~~-~v~~d~~~~g~~~~~~l~~~~g~~~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~ 154 (282)
T cd06318 89 SINLEA--G------VVT-QVQSSNAKNGNLVGEWVVGELGDKPMKIILLSGDAGNLVGQARRDGFLLGVSEAQL 154 (282)
T ss_pred CCCCCc--C------eEE-EEecCcHHHHHHHHHHHHHHhCCCCceEEEEECCCCCchHhHHHHhHHHHHhhCcc
Confidence 321000 1 111 1223322 34566666765 33334589888764322 335677777764
No 90
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=84.48 E-value=23 Score=29.82 Aligned_cols=153 Identities=9% Similarity=0.056 Sum_probs=77.0
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHh--cCCCccEEEEeCHH-HHHHHHHHHHhcCCCCcEEEEeCHHHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN--ADTIFDWIIITSPE-AGSVFLEAWKEAGTPNVRIGVVGAGTA 139 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~--~l~~~d~IiFTS~~-aV~~f~~~l~~~~~~~~~i~aIG~~Ta 139 (241)
..+.+.++++|+++...... .+.+...+.++ .-..+|+||+++.. .-..+.... . .+.+++++|....
T Consensus 19 ~gi~~~~~~~gy~v~~~~~~-----~~~~~~~~~i~~~~~~~~dgiii~~~~~~~~~~~~~~-~---~~~pvV~i~~~~~ 89 (269)
T cd06293 19 DAVEEEADARGLSLVLCATR-----NRPERELTYLRWLDTNHVDGLIFVTNRPDDGALAKLI-N---SYGNIVLVDEDVP 89 (269)
T ss_pred HHHHHHHHHCCCEEEEEeCC-----CCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHH-h---cCCCEEEECCCCC
Confidence 34556778889888654322 11111112221 13679999997531 112222222 1 3578999996431
Q ss_pred HHHHHhhhccCCCCceeecCCCC-CHHHHHHHhhhCCCCccEEEEEccCCCc-------hhHHHHHHhCCCeeeEeeeee
Q 026235 140 SIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYT 211 (241)
Q Consensus 140 ~~L~~~~~~~~~Gi~~~~~p~~~-t~e~L~~~l~~~~~~~~~iL~~~g~~~~-------~~L~~~L~~~G~~V~~~~vY~ 211 (241)
.. .+. .+.++.+ .+...++.|.+. ..++++++.|.... .-+.+.|++.|..+....++.
T Consensus 90 ----~~------~~~-~V~~d~~~~~~~~~~~L~~~--G~~~i~~i~~~~~~~~~~~R~~Gf~~a~~~~~~~~~~~~~~~ 156 (269)
T cd06293 90 ----GA------KVP-KVFCDNEQGGRLATRHLARA--GHRRIAFVGGPDALISARERYAGYREALAEAHIPEVPEYVCF 156 (269)
T ss_pred ----CC------CCC-EEEECCHHHHHHHHHHHHHC--CCceEEEEecCcccccHHHHHHHHHHHHHHcCCCCChheEEe
Confidence 11 222 1333333 345566677665 34689988765332 336677788887654433332
Q ss_pred eecCCCCh-HHHHHHc---CCCCEEEEECC
Q 026235 212 TEPVHHVD-QTVLKQA---LSIPVVAVASP 237 (241)
Q Consensus 212 ~~~~~~~~-~~~~~~l---~~id~IvFtSp 237 (241)
........ ..+.+.+ ..+|+|+..+-
T Consensus 157 ~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d 186 (269)
T cd06293 157 GDYTREFGRAAAAQLLARGDPPTAIFAASD 186 (269)
T ss_pred cCCCHHHHHHHHHHHHcCCCCCCEEEEcCc
Confidence 22111111 1222223 24788877654
No 91
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=84.07 E-value=9.9 Score=32.70 Aligned_cols=119 Identities=13% Similarity=0.138 Sum_probs=66.4
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHHHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~L 142 (241)
..+.+.++++|+.+...+..+ .. ..+ .-..+|.||+.+...-...++.+.+ .+++++.+|.....
T Consensus 27 ~~i~~~~~~~gy~~~~~~~~~-----~~----~~l-~~~~vdgiIi~~~~~~~~~~~~l~~---~~iPvV~i~~~~~~-- 91 (269)
T cd06287 27 AAAAESALERGLALCLVPPHE-----AD----SPL-DALDIDGAILVEPMADDPQVARLRQ---RGIPVVSIGRPPGD-- 91 (269)
T ss_pred HHHHHHHHHCCCEEEEEeCCC-----ch----hhh-hccCcCeEEEecCCCCCHHHHHHHH---cCCCEEEeCCCCCC--
Confidence 456678889999888765431 11 123 2358999998765422222333332 36789999864210
Q ss_pred HHhhhccCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEccCCCc-------hhHHHHHHhCCCeee
Q 026235 143 EEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVV 205 (241)
Q Consensus 143 ~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~~~~~~iL~~~g~~~~-------~~L~~~L~~~G~~V~ 205 (241)
.. ++.....-.......+++.|.+.. .++++++.+.... .-+.+.+++.|....
T Consensus 92 -~~------~~~~V~~d~~~~~~~a~~~L~~~G--~~~I~~i~~~~~~~~~~~R~~gf~~a~~~~g~~~~ 152 (269)
T cd06287 92 -RT------DVPYVDLQSAATARMLLEHLRAQG--ARQIALIVGSARRNSYLEAEAAYRAFAAEHGMPPV 152 (269)
T ss_pred -CC------CCCeEeeCcHHHHHHHHHHHHHcC--CCcEEEEeCCcccccHHHHHHHHHHHHHHcCCCcc
Confidence 12 333222222233455666666553 3688888664321 235667778887654
No 92
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=83.49 E-value=12 Score=32.27 Aligned_cols=123 Identities=14% Similarity=0.097 Sum_probs=60.5
Q ss_pred HHHHHHHCCCcEEEeceEEEeeCCC--chHHHHHHhcCCCccEEEEeCHH--HHHHHHHHHHhcCCCCcEEEEeCHHHHH
Q 026235 65 LIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLNADTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (241)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~--~~~l~~~l~~l~~~d~IiFTS~~--aV~~f~~~l~~~~~~~~~i~aIG~~Ta~ 140 (241)
+.+.++++|+++..+.. .....+ ...+...+ ...+|.||+.+.. ..+...+.+.+ .+++++.++....
T Consensus 21 i~~~a~~~g~~~~~~~~--~~~~~~~~~~~l~~~~--~~~~dgiii~~~~~~~~~~~i~~~~~---~~iPvV~~~~~~~- 92 (294)
T cd06316 21 AKDEFAKLGIEVVATTD--AQFDPAKQVADIETTI--SQKPDIIISIPVDPVSTAAAYKKVAE---AGIKLVFMDNVPS- 92 (294)
T ss_pred HHHHHHHcCCEEEEecC--CCCCHHHHHHHHHHHH--HhCCCEEEEcCCCchhhhHHHHHHHH---cCCcEEEecCCCc-
Confidence 45667888988874311 111111 12233333 2579999885532 23344444443 3578888875431
Q ss_pred HHHH-hhhccCCCCceeecCCCC-CHHHHHHHhhhCCCCccEEEEEccCCCc-------hhHHHHHHhCC
Q 026235 141 IFEE-VIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRG 201 (241)
Q Consensus 141 ~L~~-~~~~~~~Gi~~~~~p~~~-t~e~L~~~l~~~~~~~~~iL~~~g~~~~-------~~L~~~L~~~G 201 (241)
.... . ++...+..+.. ....+++.|.+...+.+++.++.+.... .-+.+.|++++
T Consensus 93 ~~~~~~------~~~~~v~~d~~~~g~~~~~~l~~~~~g~~~i~~l~~~~~~~~~~~R~~gf~~~l~~~~ 156 (294)
T cd06316 93 GLEHGK------DYAGIVTDDNYGNGQIAADALAKALPGKGKVGLIYHGADYFVTNQRDQGFKETIKKNY 156 (294)
T ss_pred ccccCc------ceEEEEccCcHHHHHHHHHHHHHHhCCCceEEEEeCCCCcccHHHHHHHHHHHHHHhC
Confidence 1111 1 11111223322 3345556665543345789888775432 23445666554
No 93
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=83.27 E-value=18 Score=33.61 Aligned_cols=162 Identities=14% Similarity=0.080 Sum_probs=88.8
Q ss_pred CeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCCCCcE
Q 026235 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVR 130 (241)
Q Consensus 51 ~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~ 130 (241)
|+|++....+ ...+.+++.| ++...|--. . . .+ .+.++|.++..|..-|.. +.+.. ++++
T Consensus 1 mkI~~d~~~p---~~~~~~~~~~-~v~~~~~~~---~--~---~~---~l~daD~liv~~~t~v~~--~ll~~---~~Lk 60 (381)
T PRK00257 1 MKIVADENIP---LLDAFFAGFG-EIRRLPGRA---F--D---RA---AVRDADVLLVRSVTRVDR--ALLEG---SRVR 60 (381)
T ss_pred CEEEEecCch---hHHHHHhhCC-cEEEcCCcc---c--C---HH---HhCCceEEEEeCCCCCCH--HHhcC---CCCe
Confidence 5677776653 3455666555 665554211 0 1 11 357889988766533322 12221 3455
Q ss_pred EEE---eCHH--HHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhh-------C---CCCccEEEEEccCCCchhHHH
Q 026235 131 IGV---VGAG--TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK-------N---GKKKCTVLYPASAKASNEIEE 195 (241)
Q Consensus 131 i~a---IG~~--Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~-------~---~~~~~~iL~~~g~~~~~~L~~ 195 (241)
+++ +|-- -.+++++. |+.+.-.| ..++.+++|.... . ...++++.++....-...+.+
T Consensus 61 ~I~~~~~G~D~iD~~~~~~~------gI~v~nap-g~na~aVAE~v~~~lL~l~r~~g~~l~gktvGIIG~G~IG~~va~ 133 (381)
T PRK00257 61 FVGTCTIGTDHLDLDYFAEA------GITWSSAP-GCNARGVVDYVLGSLLTLAEREGVDLAERTYGVVGAGHVGGRLVR 133 (381)
T ss_pred EEEECCccccccCHHHHHHC------CCEEEECC-CcChHHHHHHHHHHHHHHhcccCCCcCcCEEEEECCCHHHHHHHH
Confidence 443 4422 24567888 99875555 4566666655321 1 235778888855445567899
Q ss_pred HHHhCCCeeeEeeeeeeecCCC-ChHHHHHHcCCCCEEEEECCcc
Q 026235 196 GLSNRGFEVVRLNTYTTEPVHH-VDQTVLKQALSIPVVAVASPSA 239 (241)
Q Consensus 196 ~L~~~G~~V~~~~vY~~~~~~~-~~~~~~~~l~~id~IvFtSps~ 239 (241)
.|+..|++|.-+.-++...... ....+.+.+.+.|+|++.-|.+
T Consensus 134 ~l~a~G~~V~~~Dp~~~~~~~~~~~~~l~ell~~aDiV~lh~Plt 178 (381)
T PRK00257 134 VLRGLGWKVLVCDPPRQEAEGDGDFVSLERILEECDVISLHTPLT 178 (381)
T ss_pred HHHHCCCEEEEECCcccccccCccccCHHHHHhhCCEEEEeCcCC
Confidence 9999998775443322211100 0111222237899999988753
No 94
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=83.18 E-value=30 Score=33.46 Aligned_cols=142 Identities=23% Similarity=0.134 Sum_probs=82.0
Q ss_pred CChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhc-CCCCcEEEEeC-HH
Q 026235 60 GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA-GTPNVRIGVVG-AG 137 (241)
Q Consensus 60 ~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~-~~~~~~i~aIG-~~ 137 (241)
.+-.++.+.|++.|+++..++... ...+ .|..+++.+.-|..++..-....+.+++. +.+-+...=+| ..
T Consensus 175 ~D~~EikrlL~~~Gi~vn~v~p~g----~s~~----di~~l~~A~~nivl~~~~g~~~A~~Lee~fGiP~i~~~PiG~~~ 246 (519)
T PRK02910 175 DDLTELRRLLATLGIDVNVVAPLG----ASPA----DLKRLPAAWFNVVLYREIGESAARYLEREFGQPYVKTVPIGVGA 246 (519)
T ss_pred hHHHHHHHHHHHcCCeEEEEeCCC----CCHH----HHHhcccCcEEEEeCHHHHHHHHHHHHHHhCCcccccccccHHH
Confidence 345789999999999998764211 1222 23456778888888887666777777653 44444445577 45
Q ss_pred HHHHHHHhhhccCCCCceeecCCCCCHHH------H--HHHh-hhCCCCccEEEEEccCCCchhHHHHHH-hCCCeeeEe
Q 026235 138 TASIFEEVIQSSKCSLDVAFSPSKATGKI------L--ASEL-PKNGKKKCTVLYPASAKASNEIEEGLS-NRGFEVVRL 207 (241)
Q Consensus 138 Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~------L--~~~l-~~~~~~~~~iL~~~g~~~~~~L~~~L~-~~G~~V~~~ 207 (241)
|.+.|++.. ..+|+..... +.+-.+. + .+.+ ......|+++.+..+..-.-.+...|. +.|.+|..+
T Consensus 247 T~~fL~~la--~~~g~~~~~~-e~~i~~~~~~~~~l~~~~~~~d~~~l~Gkrv~I~gd~~~a~~l~~~L~~ElGm~vv~~ 323 (519)
T PRK02910 247 TARFIREVA--ELLNLDGADL-EAFILDGLSAPSRLPWFSRSVDSTYLTGKRVFVFGDATHAVAAARILSDELGFEVVGA 323 (519)
T ss_pred HHHHHHHHH--HHhCCChhhh-HHHHHHHHhhhhhhhHHHHhhhhHhhcCCEEEEEcCcHHHHHHHHHHHHhcCCeEEEE
Confidence 666666651 1125532100 0000000 0 1111 011235789887755444456888888 799999877
Q ss_pred eeeee
Q 026235 208 NTYTT 212 (241)
Q Consensus 208 ~vY~~ 212 (241)
..|..
T Consensus 324 gt~~~ 328 (519)
T PRK02910 324 GTYLR 328 (519)
T ss_pred ecCCc
Confidence 66644
No 95
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=83.05 E-value=21 Score=31.25 Aligned_cols=120 Identities=10% Similarity=0.083 Sum_probs=64.4
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHh--cCCCccEEEEeCHHH-HHHHHHHHHhcCCCCcEEEEeCHHHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN--ADTIFDWIIITSPEA-GSVFLEAWKEAGTPNVRIGVVGAGTA 139 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~--~l~~~d~IiFTS~~a-V~~f~~~l~~~~~~~~~i~aIG~~Ta 139 (241)
..+.+.++++|+.+....... +.+...+.+. .-..+|.||+.+... .......+.+ .+++++.+|....
T Consensus 80 ~~i~~~~~~~gy~~~i~~~~~-----~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~l~~---~~iPvV~~~~~~~ 151 (327)
T TIGR02417 80 KELEQQCREAGYQLLIACSDD-----NPDQEKVVIENLLARQVDALIVASCMPPEDAYYQKLQN---EGLPVVALDRSLD 151 (327)
T ss_pred HHHHHHHHHCCCEEEEEeCCC-----CHHHHHHHHHHHHHcCCCEEEEeCCCCCChHHHHHHHh---cCCCEEEEccccC
Confidence 345566778898887653321 1111111221 126799999876432 2223333333 3578999986421
Q ss_pred HHHHHhhhccCCCCceeecCCCC-CHHHHHHHhhhCCCCccEEEEEccCCCc-------hhHHHHHHhCCCe
Q 026235 140 SIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFE 203 (241)
Q Consensus 140 ~~L~~~~~~~~~Gi~~~~~p~~~-t~e~L~~~l~~~~~~~~~iL~~~g~~~~-------~~L~~~L~~~G~~ 203 (241)
.. ++.. +..+.+ .+..+++.|.+.. .++|.++.+.... .-+.+.|+++|.+
T Consensus 152 ----~~------~~~~-V~~dn~~~~~~~~~~L~~~G--~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~~~~ 210 (327)
T TIGR02417 152 ----DE------HFCS-VISDDVDAAAELIERLLSQH--ADEFWYLGAQPELSVSRDRLAGFRQALKQATLE 210 (327)
T ss_pred ----CC------CCCE-EEeCcHHHHHHHHHHHHHCC--CCeEEEEeCcccchhHHHHHHHHHHHHHHcCCC
Confidence 22 3332 333333 3455566666543 4689999765431 2356678888765
No 96
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=82.77 E-value=19 Score=30.23 Aligned_cols=119 Identities=17% Similarity=0.165 Sum_probs=65.4
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHh--cCCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN--ADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~--~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~ 140 (241)
..+.+.++++|+++...+.- .+.+...+.++ .-..+|+||+++...- ...+. ..++++++++....
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~-----~~~~~~~~~i~~~~~~~~dgiii~~~~~~---~~~~~---~~gipvv~~~~~~~- 86 (265)
T cd06291 19 RAVEKELYKKGYKLILCNSD-----NDPEKEREYLEMLRQNQVDGIIAGTHNLG---IEEYE---NIDLPIVSFDRYLS- 86 (265)
T ss_pred HHHHHHHHHCCCeEEEecCC-----ccHHHHHHHHHHHHHcCCCEEEEecCCcC---HHHHh---cCCCCEEEEeCCCC-
Confidence 34556788889887754322 11111112221 1257999999876422 12222 23688999986421
Q ss_pred HHHHhhhccCCCCceeecCCC-CCHHHHHHHhhhCCCCccEEEEEccCCC-c-------hhHHHHHHhCCCeeeE
Q 026235 141 IFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-S-------NEIEEGLSNRGFEVVR 206 (241)
Q Consensus 141 ~L~~~~~~~~~Gi~~~~~p~~-~t~e~L~~~l~~~~~~~~~iL~~~g~~~-~-------~~L~~~L~~~G~~V~~ 206 (241)
. ++.. +..+. ..+..+++.|.+. ..++++++.+... . .-+.+.|+++|.++..
T Consensus 87 ----~------~~~~-V~~d~~~~g~~~~~~l~~~--g~~~i~~i~~~~~~~~~~~~r~~gf~~~l~~~~~~~~~ 148 (265)
T cd06291 87 ----E------NIPI-VSSDNYEGGRLAAEELIER--GCKHIAHIGGPNNTVSPTNLRYEGFLDVLKENGLEVRI 148 (265)
T ss_pred ----C------CCCe-EeechHHHHHHHHHHHHHc--CCcEEEEEccCcccccchHHHHHHHHHHHHHcCCCCCh
Confidence 2 3222 22332 2345666677665 3468988876554 1 2366788888876543
No 97
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=82.69 E-value=23 Score=29.89 Aligned_cols=91 Identities=21% Similarity=0.102 Sum_probs=51.6
Q ss_pred CCccEEEEeCHH--HHHHHHHHHHhcCCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCC-CHHHHHHHhhhCCCC
Q 026235 101 TIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKK 177 (241)
Q Consensus 101 ~~~d~IiFTS~~--aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~-t~e~L~~~l~~~~~~ 177 (241)
.++|.||+.+.. .....++.+.+ .++++++++..... . ++. .+..+.+ .+..+++.|.+...+
T Consensus 59 ~~vdgiIi~~~~~~~~~~~l~~~~~---~~iPvv~~~~~~~~----~------~~~-~v~~d~~~~g~~~~~~l~~~~~g 124 (272)
T cd06300 59 QGVDAIIINPASPTALNPVIEEACE---AGIPVVSFDGTVTT----P------CAY-NVNEDQAEFGKQGAEWLVKELGG 124 (272)
T ss_pred cCCCEEEEeCCChhhhHHHHHHHHH---CCCeEEEEecCCCC----C------cee-EecCCHHHHHHHHHHHHHHHcCC
Confidence 589999997643 33433444443 46889988753211 1 211 1223332 345666667665334
Q ss_pred ccEEEEEccCCCc-------hhHHHHHHhCC-Ceee
Q 026235 178 KCTVLYPASAKAS-------NEIEEGLSNRG-FEVV 205 (241)
Q Consensus 178 ~~~iL~~~g~~~~-------~~L~~~L~~~G-~~V~ 205 (241)
.++++++.|.... .-+.+.+++.| .++.
T Consensus 125 ~~~i~~i~~~~~~~~~~~R~~g~~~a~~~~~~~~~~ 160 (272)
T cd06300 125 KGNVLVVRGLAGHPVDEDRYAGAKEVLKEYPGIKIV 160 (272)
T ss_pred CceEEEEECCCCCcchHHHHHHHHHHHHHCCCcEEE
Confidence 5789999764321 34677777776 6654
No 98
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=82.42 E-value=28 Score=29.11 Aligned_cols=124 Identities=17% Similarity=0.109 Sum_probs=63.6
Q ss_pred HHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhc--CCCccEEEEeCHH--HHHHHHHHHHhcCCCCcEEEEeCHHHH
Q 026235 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTA 139 (241)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~--aV~~f~~~l~~~~~~~~~i~aIG~~Ta 139 (241)
.+.+.++++|+.+...+. . .+.+...+.+.. -..+|+||+.+.. .+...+..+.+ .+++++.++..-.
T Consensus 20 ~i~~~~~~~g~~v~~~~~---~--~~~~~~~~~~~~~~~~~~dgii~~~~~~~~~~~~l~~l~~---~~ipvv~~~~~~~ 91 (268)
T cd06323 20 GAQKEAKELGYELTVLDA---Q--NDAAKQLNDIEDLITRGVDAIIINPTDSDAVVPAVKAANE---AGIPVFTIDREAN 91 (268)
T ss_pred HHHHHHHHcCceEEecCC---C--CCHHHHHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHH---CCCcEEEEccCCC
Confidence 455677888988865432 1 122211222221 2579999997643 22333444433 3688888875311
Q ss_pred HHHHHhhhccCCCCceeecCCCC-CHHHHHHHhhhCCCCccEEEEEccCCCc-------hhHHHHHHhC-CCeee
Q 026235 140 SIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNR-GFEVV 205 (241)
Q Consensus 140 ~~L~~~~~~~~~Gi~~~~~p~~~-t~e~L~~~l~~~~~~~~~iL~~~g~~~~-------~~L~~~L~~~-G~~V~ 205 (241)
.. ..-..+..+.. .+..+++.+.+.....++++++.|.... .-+.+.|+++ |.++.
T Consensus 92 ----~~------~~~~~v~~d~~~~~~~~~~~l~~~~~g~~~i~~l~~~~~~~~~~~r~~g~~~~l~~~~~~~~~ 156 (268)
T cd06323 92 ----GG------EVVSQIASDNVAGGKMAAEYLVKLLGGKGKVVELQGIPGASAARERGKGFHEVVDKYPGLKVV 156 (268)
T ss_pred ----CC------ceEEEEccCcHHHHHHHHHHHHHHhCCCceEEEEeCCCCCccHHHHHHHHHHHHHhCCCcEEE
Confidence 11 10011233333 2455677776653234688888764322 2355677763 66543
No 99
>PRK10537 voltage-gated potassium channel; Provisional
Probab=82.11 E-value=18 Score=33.79 Aligned_cols=115 Identities=12% Similarity=0.084 Sum_probs=74.5
Q ss_pred CCeEEEeCCCCChHHHHHHHHHCCCcEEEeceEE-----------EeeC-CCchHHHHHHhcCCCccEEEEeCHHHHHHH
Q 026235 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQ-----------HAQG-PDTDRLSSVLNADTIFDWIIITSPEAGSVF 117 (241)
Q Consensus 50 g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~-----------~~~~-~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f 117 (241)
..+|+|+.-..-...+.+.|++.|.++..+---+ +... .+.+.+++ . .+++.++++.++.+-.++.
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d~~~~~~~~g~~vI~GD~td~e~L~~-A-gI~~A~aVI~~t~dD~~Nl 317 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQRGQAVTVIVPLGLEHRLPDDADLIPGDSSDSAVLKK-A-GAARARAILALRDNDADNA 317 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHCCCCEEEEECchhhhhccCCCcEEEeCCCCHHHHHh-c-CcccCCEEEEcCCChHHHH
Confidence 4678999888778889999999887764432100 1111 12222222 2 4678999999988876666
Q ss_pred HHHHH--hcCCCCcEEEE--eCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhh
Q 026235 118 LEAWK--EAGTPNVRIGV--VGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (241)
Q Consensus 118 ~~~l~--~~~~~~~~i~a--IG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~ 173 (241)
+-.+. +.+ ++.++++ --+...+.+++. |.+..+.|..-.++.|++.+..
T Consensus 318 ~ivL~ar~l~-p~~kIIa~v~~~~~~~~L~~~------GaD~VIsp~~l~g~~la~~l~g 370 (393)
T PRK10537 318 FVVLAAKEMS-SDVKTVAAVNDSKNLEKIKRV------HPDMIFSPQLLGSELLARTLNG 370 (393)
T ss_pred HHHHHHHHhC-CCCcEEEEECCHHHHHHHHhc------CCCEEECHHHHHHHHHHHHhcC
Confidence 54332 223 4555554 467778888898 9998888876677777777653
No 100
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=82.00 E-value=30 Score=29.19 Aligned_cols=127 Identities=15% Similarity=0.153 Sum_probs=62.6
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHH--HHHHHHHHHHhcCCCCcEEEEeCHHHHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~--aV~~f~~~l~~~~~~~~~i~aIG~~Ta~ 140 (241)
..+.+.++++|+++..+....- +......+...+ ...+|+||+.+.. .....+..+.+ .++++++++...
T Consensus 19 ~~i~~~~~~~g~~~~~~~~~~~-~~~~~~~i~~~~--~~~~dgiii~~~~~~~~~~~l~~~~~---~~ipvV~~~~~~-- 90 (277)
T cd06319 19 RGVKSKAKALGYDAVELSAENS-AKKELENLRTAI--DKGVSGIIISPTNSSAAVTLLKLAAQ---AKIPVVIADIGA-- 90 (277)
T ss_pred HHHHHHHHhcCCeEEEecCCCC-HHHHHHHHHHHH--hcCCCEEEEcCCchhhhHHHHHHHHH---CCCCEEEEecCC--
Confidence 3455667788988865433110 000011223333 2679999887633 23333444433 357888887432
Q ss_pred HHHHhhhccCCCCceeecCCCCC-HHHHHHHhhhC----CCCccEEEEEccCCCc-------hhHHHHHHhCCCeee
Q 026235 141 IFEEVIQSSKCSLDVAFSPSKAT-GKILASELPKN----GKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVV 205 (241)
Q Consensus 141 ~L~~~~~~~~~Gi~~~~~p~~~t-~e~L~~~l~~~----~~~~~~iL~~~g~~~~-------~~L~~~L~~~G~~V~ 205 (241)
... .....+..+.+. ...+++.+.+. ....+++.++.+.... .-+.+.|++.|.++.
T Consensus 91 --~~~------~~~~~v~~d~~~~g~~~~~~l~~~~~~~~~g~~~i~~i~~~~~~~~~~~r~~gf~~~l~~~~~~~~ 159 (277)
T cd06319 91 --EGG------DYVSYIKSDNYEGAYDLGKFLAAAMKAQGWADGKVGMVAIPQKRKNGQKRTKGFKEAMKEAGCDLA 159 (277)
T ss_pred --CCC------ceEEEEeeccHHHHHHHHHHHHHHHHhhCCCCCcEEEEeccCCCccHHHHHHHHHHHHHhcCCceE
Confidence 111 111112233222 33455555443 1134688888654321 345678888887754
No 101
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=81.83 E-value=17 Score=33.50 Aligned_cols=71 Identities=17% Similarity=0.259 Sum_probs=49.2
Q ss_pred CCCcEEEEeCHHHHHHHHHhhhccCCCCceee--cCCCCCHHHHHHHhhhCCCCccEEEEEc-----cCCCchhHHHHHH
Q 026235 126 TPNVRIGVVGAGTASIFEEVIQSSKCSLDVAF--SPSKATGKILASELPKNGKKKCTVLYPA-----SAKASNEIEEGLS 198 (241)
Q Consensus 126 ~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~--~p~~~t~e~L~~~l~~~~~~~~~iL~~~-----g~~~~~~L~~~L~ 198 (241)
-.+..|++=|+.-.++|+++ |++-.+ +...+..+ ..++|.+... ++|++.. |+.....+.+.|+
T Consensus 22 ~~~~~ilveg~~d~~~l~~l------gi~g~~i~~s~~p~~~-cad~ii~~gi--~rVVi~~D~d~~G~~~~~~~~~~L~ 92 (360)
T PRK14719 22 EKGIPILVEGPNDILSLKNL------KINANFITVSNTPVFQ-IADDLIAENI--SEVILLTDFDRAGRVYAKNIMEEFQ 92 (360)
T ss_pred hCCCEEEEEcchHHHHHHHc------CCCCcEEEEeCCchHH-HHHHHHHcCC--CEEEEEECCCCCCCccchHHHHHHH
Confidence 35799999999999999999 995322 22333333 6666665432 5888777 2222235689999
Q ss_pred hCCCeee
Q 026235 199 NRGFEVV 205 (241)
Q Consensus 199 ~~G~~V~ 205 (241)
++|++|.
T Consensus 93 ~aGi~V~ 99 (360)
T PRK14719 93 SRGIKVN 99 (360)
T ss_pred HCCCEEE
Confidence 9999994
No 102
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=81.82 E-value=21 Score=30.18 Aligned_cols=126 Identities=11% Similarity=0.118 Sum_probs=63.8
Q ss_pred HHHHHHHHC-CCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHH--HHHHHHHHHHhcCCCCcEEEEeCHHHHH
Q 026235 64 KLIKALAKH-RIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (241)
Q Consensus 64 ~l~~~L~~~-G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~--aV~~f~~~l~~~~~~~~~i~aIG~~Ta~ 140 (241)
.+.+.++++ |+++....... .+....+.+...+ ...+|.||+.+.. ........+.+ .+++++.+|.....
T Consensus 20 ~i~~~~~~~~g~~~~~~~~~~-~~~~~~~~i~~~~--~~~vdgiii~~~~~~~~~~~~~~~~~---~~ipvV~~~~~~~~ 93 (270)
T cd06308 20 EIQREASNYPDVELIIADAAD-DNSKQVADIENFI--RQGVDLLIISPNEAAPLTPVVEEAYR---AGIPVILLDRKILS 93 (270)
T ss_pred HHHHHHHhcCCcEEEEEcCCC-CHHHHHHHHHHHH--HhCCCEEEEecCchhhchHHHHHHHH---CCCCEEEeCCCCCC
Confidence 444556665 78876543210 0000012233333 2578999987643 22333333333 46889999853211
Q ss_pred HHHHhhhccCCCCceeecCCCC-CHHHHHHHhhhCCCCccEEEEEccCCCc-------hhHHHHHHhC-CCeee
Q 026235 141 IFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNR-GFEVV 205 (241)
Q Consensus 141 ~L~~~~~~~~~Gi~~~~~p~~~-t~e~L~~~l~~~~~~~~~iL~~~g~~~~-------~~L~~~L~~~-G~~V~ 205 (241)
. +....+..+.+ .+..+++.+.+.....++++++.+.... .-+.+.|+++ |.++.
T Consensus 94 ----~------~~~~~V~~d~~~~g~~~~~~l~~~~~g~~~i~~l~~~~~~~~~~~R~~g~~~~l~~~~~~~~~ 157 (270)
T cd06308 94 ----D------KYTAYIGADNYEIGRQAGEYIANLLPGKGNILEIWGLEGSSPAIERHDGFKEALSKYPKIKIV 157 (270)
T ss_pred ----c------cceEEeecCcHHHHHHHHHHHHHHcCCCceEEEEECCCCCchHHHHHHHHHHHHHHCCCCEEE
Confidence 1 11122333433 3455566666643345799999764432 2345577777 76543
No 103
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=81.76 E-value=4.4 Score=32.90 Aligned_cols=70 Identities=10% Similarity=0.111 Sum_probs=43.3
Q ss_pred HHHHHHHCCCcEEEeceEEEee--C----CCchHHHHHHhcCCCccEEEEeCH-------HHHHHHHHHHHhcCCCCcEE
Q 026235 65 LIKALAKHRIDCLELPLIQHAQ--G----PDTDRLSSVLNADTIFDWIIITSP-------EAGSVFLEAWKEAGTPNVRI 131 (241)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~--~----~~~~~l~~~l~~l~~~d~IiFTS~-------~aV~~f~~~l~~~~~~~~~i 131 (241)
+.+.+++.|.++..+.+.+... . ...+.+....+.+...|.|||.|| ...++|++.+....+.++++
T Consensus 22 ~~~~l~~~~~~~~~idl~~l~~~~~~~~~~~~~~~~~l~~~i~~AD~iI~~sP~Y~~sip~~LK~~iD~~~~~~l~~K~v 101 (171)
T TIGR03567 22 VREALQEQGVEVDHLSVRDLPAEDLLFARFDSPAIKAATAQVAQADGVVVATPVYKASYSGVLKALLDLLPQRALRGKVV 101 (171)
T ss_pred HHHHHHHCCCeEEEEEecCCChHHhhhcCCCCHHHHHHHHHHHHCCEEEEECCcccCCCCHHHHHHHHhCChhhhCCCEE
Confidence 3445566788777666544211 0 112455566666788999999998 57788887765434555555
Q ss_pred EEe
Q 026235 132 GVV 134 (241)
Q Consensus 132 ~aI 134 (241)
+.+
T Consensus 102 ~~~ 104 (171)
T TIGR03567 102 LPI 104 (171)
T ss_pred EEE
Confidence 544
No 104
>PRK06756 flavodoxin; Provisional
Probab=81.48 E-value=5.8 Score=31.19 Aligned_cols=64 Identities=11% Similarity=0.159 Sum_probs=40.5
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHH--------HHHHHHHHHHhcCCCCcEEEEe
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE--------AGSVFLEAWKEAGTPNVRIGVV 134 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~--------aV~~f~~~l~~~~~~~~~i~aI 134 (241)
+.+++.|++.|.++....+.+.. .. ..+.++|.|+|-|+. .+..|++.+....+.+.+++++
T Consensus 20 ~~ia~~l~~~g~~v~~~~~~~~~---~~-------~~~~~~d~vi~gspt~~~g~~p~~~~~fl~~l~~~~l~~k~~~~f 89 (148)
T PRK06756 20 DHIAGVIRETENEIEVIDIMDSP---EA-------SILEQYDGIILGAYTWGDGDLPDDFLDFYDAMDSIDLTGKKAAVF 89 (148)
T ss_pred HHHHHHHhhcCCeEEEeehhccC---CH-------HHHhcCCeEEEEeCCCCCCCCcHHHHHHHHHHhcCCCCCCEEEEE
Confidence 34455566678777655443321 11 134689999998754 3666776665555678889888
Q ss_pred CH
Q 026235 135 GA 136 (241)
Q Consensus 135 G~ 136 (241)
|-
T Consensus 90 gt 91 (148)
T PRK06756 90 GS 91 (148)
T ss_pred eC
Confidence 76
No 105
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=80.74 E-value=44 Score=30.30 Aligned_cols=170 Identities=9% Similarity=0.080 Sum_probs=88.6
Q ss_pred CeEEEeCCCCChHH-HHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCH-HHHHHHHHHHHhcCCCC
Q 026235 51 PKVVVTRERGKNGK-LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP-EAGSVFLEAWKEAGTPN 128 (241)
Q Consensus 51 ~~VLitR~~~~~~~-l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~-~aV~~f~~~l~~~~~~~ 128 (241)
++|++...++...+ ..+.++++|.++...+. +. .++. ++.+.++|.|+..+. .--+.+++.+++. +
T Consensus 2 ~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~----~~--~~~~---~~~~~~~d~ii~~~~~~~~~~~l~~~~~~---~ 69 (330)
T PRK12480 2 TKIMFFGTRDYEKEMALNWGKKNNVEVTTSKE----LL--SSAT---VDQLKDYDGVTTMQFGKLENDVYPKLESY---G 69 (330)
T ss_pred cEEEEEeCcHHHHHHHHHHHHhcCeEEEEcCC----CC--CHHH---HHHhCCCCEEEEecCCCCCHHHHHhhhhc---C
Confidence 67777766654444 45566788776665432 22 2222 234578998876432 2222334444322 3
Q ss_pred cEEEE---eCHHH--HHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhh----------------------C-------
Q 026235 129 VRIGV---VGAGT--ASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK----------------------N------- 174 (241)
Q Consensus 129 ~~i~a---IG~~T--a~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~----------------------~------- 174 (241)
+|+++ +|--. .+++++. |+.+.-+|. +.++.+++.... +
T Consensus 70 Lk~I~~~~~G~d~id~~~~~~~------gI~v~n~~~-~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~~~~~ 142 (330)
T PRK12480 70 IKQIAQRTAGFDMYDLDLAKKH------NIVISNVPS-YSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMSK 142 (330)
T ss_pred ceEEEecccccchhhHHHHHHC------CCEEEeCCC-CChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcccccccCcc
Confidence 43332 33322 2455677 888766553 444444432110 0
Q ss_pred CCCccEEEEEccCCCchhHHHHHHhCCCeeeEeeeeeeecCCC--ChHHHHHHcCCCCEEEEECCcc
Q 026235 175 GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHH--VDQTVLKQALSIPVVAVASPSA 239 (241)
Q Consensus 175 ~~~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~--~~~~~~~~l~~id~IvFtSps~ 239 (241)
...++++.++....-...+...|+..|.+|.-+..+....... ....+.+.+.+.|+|++.-|.+
T Consensus 143 ~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDiVil~lP~t 209 (330)
T PRK12480 143 PVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDFLTYKDSVKEAIKDADIISLHVPAN 209 (330)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhhhhccCCHHHHHhcCCEEEEeCCCc
Confidence 1234567776554445578899999997765444332211110 0012223347899999988865
No 106
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=80.67 E-value=20 Score=29.81 Aligned_cols=54 Identities=19% Similarity=-0.046 Sum_probs=44.3
Q ss_pred CCHHHHHHHhhhCCCCccEEEEEccCCCchhHHHHHHhCCCeeeEeeeeeeecC
Q 026235 162 ATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPV 215 (241)
Q Consensus 162 ~t~e~L~~~l~~~~~~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~ 215 (241)
.+.+.+++.+.+...+|.+++++.+......+.+..+..|..+.+..+|+-...
T Consensus 122 ~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 175 (187)
T PRK00107 122 ASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGKVEEVIELTLPGL 175 (187)
T ss_pred cCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCceEeeeEEEecCCC
Confidence 345777777777766788999999988888899999999999999999976544
No 107
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=79.91 E-value=25 Score=31.13 Aligned_cols=151 Identities=8% Similarity=0.014 Sum_probs=72.6
Q ss_pred HHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHhcCCCCcE-EEEeCHHHHH
Q 026235 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVR-IGVVGAGTAS 140 (241)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~-i~aIG~~Ta~ 140 (241)
.+.+.++++|+.+...... .+.+...+.++. -..+|.||+.+...-...+..+.+ +.+ +++++...
T Consensus 80 gi~~~~~~~g~~~~~~~~~-----~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~----~~p~vV~i~~~~-- 148 (343)
T PRK10727 80 AVEQVAYHTGNFLLIGNGY-----HNEQKERQAIEQLIRHRCAALVVHAKMIPDAELASLMK----QIPGMVLINRIL-- 148 (343)
T ss_pred HHHHHHHHcCCEEEEEeCC-----CCHHHHHHHHHHHHhcCCCEEEEecCCCChHHHHHHHh----cCCCEEEEecCC--
Confidence 3455677889876533221 121111122211 257999999764211111222222 344 77887532
Q ss_pred HHHHhhhccCCCCceeecCCCCC-HHHHHHHhhhCCCCccEEEEEccCCCc-------hhHHHHHHhCCCeeeEeeeeee
Q 026235 141 IFEEVIQSSKCSLDVAFSPSKAT-GKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTT 212 (241)
Q Consensus 141 ~L~~~~~~~~~Gi~~~~~p~~~t-~e~L~~~l~~~~~~~~~iL~~~g~~~~-------~~L~~~L~~~G~~V~~~~vY~~ 212 (241)
... ++.. +..+.+. ....++.|.+.. .+++.++.|.... .-+.+.|++.|+.+....++..
T Consensus 149 --~~~------~~~~-V~~Dn~~~~~~a~~~L~~~G--~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~gi~~~~~~~~~~ 217 (343)
T PRK10727 149 --PGF------ENRC-IALDDRYGAWLATRHLIQQG--HTRIGYLCSNHSISDAEDRLQGYYDALAESGIPANDRLVTFG 217 (343)
T ss_pred --CCC------CCCE-EEECcHHHHHHHHHHHHHCC--CccEEEEeCCccccchHHHHHHHHHHHHHCCCCCChhhEEeC
Confidence 112 3322 3334333 344456666542 4689888765321 3366788888987655333322
Q ss_pred ecCCCChHHHH-HHc---CCCCEEEEEC
Q 026235 213 EPVHHVDQTVL-KQA---LSIPVVAVAS 236 (241)
Q Consensus 213 ~~~~~~~~~~~-~~l---~~id~IvFtS 236 (241)
........+.. +.+ ..+|+|+..+
T Consensus 218 ~~~~~~~~~~~~~~l~~~~~~~ai~~~n 245 (343)
T PRK10727 218 EPDESGGEQAMTELLGRGRNFTAVACYN 245 (343)
T ss_pred CCChhHHHHHHHHHHhCCCCCCEEEEcC
Confidence 22111111222 223 2478877654
No 108
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=79.78 E-value=34 Score=28.92 Aligned_cols=130 Identities=15% Similarity=0.129 Sum_probs=63.8
Q ss_pred HHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHHHHH
Q 026235 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE 143 (241)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~L~ 143 (241)
.+.+.++++|+++....... + .....+.+.+ ....+|.||+++.+.-..+.+.+.+ ..+++++.++..+..
T Consensus 22 gi~~~~~~~gy~~~~~~~~~--~-~~~~~~~~~l-~~~~vdgiii~~~~~~~~~~~~~~~--~~~ipvv~~~~~~~~--- 92 (260)
T cd06304 22 GLEKAEKELGVEVKYVESVE--D-ADYEPNLRQL-AAQGYDLIFGVGFGFMDAVEKVAKE--YPDVKFAIIDGVVDA--- 92 (260)
T ss_pred HHHHHHHhcCceEEEEecCC--H-HHHHHHHHHH-HHcCCCEEEECCcchhHHHHHHHHH--CCCCEEEEecCccCC---
Confidence 44566777888877643221 0 1111222222 1257999999886533334343332 135789999865321
Q ss_pred HhhhccCCCCceeecCCCCCH-HHHHHHhhhCCCCccEEEEEccCCCc------hhHHHHHHhCCCeeeEeeee
Q 026235 144 EVIQSSKCSLDVAFSPSKATG-KILASELPKNGKKKCTVLYPASAKAS------NEIEEGLSNRGFEVVRLNTY 210 (241)
Q Consensus 144 ~~~~~~~~Gi~~~~~p~~~t~-e~L~~~l~~~~~~~~~iL~~~g~~~~------~~L~~~L~~~G~~V~~~~vY 210 (241)
+. .+.. +..+.+.+ ..+. .+.......+++.++.+.... .-+.+.++++|..+....++
T Consensus 93 ~~------~~~~-v~~d~~~~~~~a~-~l~~~~~g~~~I~~i~~~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~~ 158 (260)
T cd06304 93 PP------NVAS-YVFREYEGSYLAG-VLAALMTKTGKVGFVGGMPIPEVNRFINGFAAGAKSVNPDITVLVIY 158 (260)
T ss_pred CC------Ceee-eecchHHHHHHHH-HHHHHhccCCceEEEeccccHHHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 02 2222 22233322 2233 333321134688888664221 23456777788765543333
No 109
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=79.25 E-value=41 Score=29.05 Aligned_cols=124 Identities=10% Similarity=0.117 Sum_probs=65.1
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhc--CCCccEEEEeCHH--HHHHHHHHHHhcCCCCcEEEEeCHHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGT 138 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~--aV~~f~~~l~~~~~~~~~i~aIG~~T 138 (241)
..+.+.++++|+++...... .+.+...+.++. ...+|.||+++.. .....+..+.+ .+++++.++...
T Consensus 46 ~~i~~~~~~~G~~~~~~~~~-----~d~~~~~~~~~~l~~~~~dgiii~~~~~~~~~~~l~~~~~---~~ipvV~~~~~~ 117 (295)
T PRK10653 46 DGAQKEADKLGYNLVVLDSQ-----NNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQ---ANIPVITLDRGA 117 (295)
T ss_pred HHHHHHHHHcCCeEEEecCC-----CCHHHHHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHH---CCCCEEEEccCC
Confidence 44556778899888764321 122211222221 2578999987643 21223333333 457888888532
Q ss_pred HHHHHHhhhccCCCCceeecCCCCC-HHHHHHHhhhCCCCccEEEEEccCCC-------chhHHHHHHhCCCee
Q 026235 139 ASIFEEVIQSSKCSLDVAFSPSKAT-GKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEV 204 (241)
Q Consensus 139 a~~L~~~~~~~~~Gi~~~~~p~~~t-~e~L~~~l~~~~~~~~~iL~~~g~~~-------~~~L~~~L~~~G~~V 204 (241)
.. .. .+. .+.++.+. +..+++.+.+....+.+++++.+... ..-+.+.+++.|.++
T Consensus 118 ~~---~~------~~~-~V~~D~~~~g~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~R~~gf~~al~~~g~~~ 181 (295)
T PRK10653 118 TK---GE------VVS-HIASDNVAGGKMAGDFIAKKLGEGAKVIQLEGIAGTSAARERGEGFKQAVAAHKFNV 181 (295)
T ss_pred CC---Cc------eee-EEccChHHHHHHHHHHHHHHhCCCceEEEEEccCCCccHHHHHHHHHHHHhhCCCEE
Confidence 10 01 122 23344444 46677777765322246666655422 244678888888765
No 110
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=79.22 E-value=9.6 Score=32.06 Aligned_cols=129 Identities=16% Similarity=0.173 Sum_probs=73.1
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCch----HHHHHHhcCCCccEEEEeCHHH--HHHHHHHHHhcCCCCcEEEEeCH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTD----RLSSVLNADTIFDWIIITSPEA--GSVFLEAWKEAGTPNVRIGVVGA 136 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~----~l~~~l~~l~~~d~IiFTS~~a--V~~f~~~l~~~~~~~~~i~aIG~ 136 (241)
.-+.+.++++|+++..+ ... ..+.+ .++..+. ..+|+||++.... ...+++.+.+. +++++.+..
T Consensus 18 ~g~~~~a~~~g~~~~~~--~~~--~~d~~~q~~~i~~~i~--~~~d~Iiv~~~~~~~~~~~l~~~~~~---gIpvv~~d~ 88 (257)
T PF13407_consen 18 KGAKAAAKELGYEVEIV--FDA--QNDPEEQIEQIEQAIS--QGVDGIIVSPVDPDSLAPFLEKAKAA---GIPVVTVDS 88 (257)
T ss_dssp HHHHHHHHHHTCEEEEE--EES--TTTHHHHHHHHHHHHH--TTESEEEEESSSTTTTHHHHHHHHHT---TSEEEEESS
T ss_pred HHHHHHHHHcCCEEEEe--CCC--CCCHHHHHHHHHHHHH--hcCCEEEecCCCHHHHHHHHHHHhhc---CceEEEEec
Confidence 44567788889998877 111 12222 2344432 5799999875443 55566666553 589999887
Q ss_pred HHHHHHHHhhhccCCCCceeecCCC-CCHHHHHHHhhhCCCCccEEEEEccCCCch-------hHHHHHHhCCCeeeEee
Q 026235 137 GTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKASN-------EIEEGLSNRGFEVVRLN 208 (241)
Q Consensus 137 ~Ta~~L~~~~~~~~~Gi~~~~~p~~-~t~e~L~~~l~~~~~~~~~iL~~~g~~~~~-------~L~~~L~~~G~~V~~~~ 208 (241)
. .... . .....+.++. .....+.+.+.+....+.+++++.|..+.. -+.+.|++.+ .+..+.
T Consensus 89 ~--~~~~-~------~~~~~v~~d~~~~G~~~a~~l~~~~~~~~~v~~~~~~~~~~~~~~r~~g~~~~l~~~~-~~~~~~ 158 (257)
T PF13407_consen 89 D--EAPD-S------PRAAYVGTDNYEAGKLAAEYLAEKLGAKGKVLILSGSPGNPNTQERLEGFRDALKEYP-GVEIVD 158 (257)
T ss_dssp T--HHTT-S------TSSEEEEE-HHHHHHHHHHHHHHHHTTTEEEEEEESSTTSHHHHHHHHHHHHHHHHCT-TEEEEE
T ss_pred c--cccc-c------cceeeeeccHHHHHHHHHHHHHHHhccCceEEeccCCCCchHHHHHHHHHHHHHhhcc-eeeeee
Confidence 6 1111 1 2222233332 233555666665544447999887776543 3556777754 555555
Q ss_pred ee
Q 026235 209 TY 210 (241)
Q Consensus 209 vY 210 (241)
.|
T Consensus 159 ~~ 160 (257)
T PF13407_consen 159 EY 160 (257)
T ss_dssp EE
T ss_pred ee
Confidence 43
No 111
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=79.20 E-value=36 Score=28.65 Aligned_cols=125 Identities=13% Similarity=0.059 Sum_probs=65.6
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHHHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~L 142 (241)
..+.+.++++|+++...+.-.. . .....+.+.+. -..+|.||+.+...-.. ++.+.+ .+++++.++..-
T Consensus 22 ~~i~~~~~~~g~~~~~~~~~~~-~-~~~~~~~~~l~-~~~vdgiii~~~~~~~~-~~~l~~---~~ipvV~~~~~~---- 90 (268)
T cd06277 22 RAIEEEAKKYGYNLILKFVSDE-D-EEEFELPSFLE-DGKVDGIILLGGISTEY-IKEIKE---LGIPFVLVDHYI---- 90 (268)
T ss_pred HHHHHHHHHcCCEEEEEeCCCC-h-HHHHHHHHHHH-HCCCCEEEEeCCCChHH-HHHHhh---cCCCEEEEccCC----
Confidence 3456677788988766543210 0 00111222221 26799999988543222 333333 357888887531
Q ss_pred HHhhhccCCCCceeecCCCC-CHHHHHHHhhhCCCCccEEEEEccCCCc-------hhHHHHHHhCCCeeeEe
Q 026235 143 EEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRL 207 (241)
Q Consensus 143 ~~~~~~~~~Gi~~~~~p~~~-t~e~L~~~l~~~~~~~~~iL~~~g~~~~-------~~L~~~L~~~G~~V~~~ 207 (241)
... ++.. +..+.+ ....+++.+.+. ..++++++.+.... .-+.+.+++.|.++...
T Consensus 91 ~~~------~~~~-V~~d~~~~~~~a~~~l~~~--g~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~ 154 (268)
T cd06277 91 PNE------KADC-VLTDNYSGAYAATEYLIEK--GHRKIGFVGDPLYSPSFEERYEGYKKALLDHGIPFNED 154 (268)
T ss_pred CCC------CCCE-EEecchHHHHHHHHHHHHC--CCCcEEEECCCCCCcchHHHHHHHHHHHHHcCCCCCcc
Confidence 122 3332 222322 334445556554 24688888765431 23567777888776543
No 112
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=79.20 E-value=36 Score=30.16 Aligned_cols=151 Identities=11% Similarity=0.076 Sum_probs=72.6
Q ss_pred HHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHhcCCCCc-EEEEeCHHHHH
Q 026235 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNV-RIGVVGAGTAS 140 (241)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~-~i~aIG~~Ta~ 140 (241)
.+.+.++++|+.+...... .+.+...+.++. -..+|.||+.+...-......+.. .. +++.+|...
T Consensus 80 gi~~~~~~~gy~~~~~~~~-----~~~~~~~~~i~~l~~~~vdGiIi~~~~~~~~~~~~~~~----~~p~vV~i~~~~-- 148 (346)
T PRK10401 80 AVDLVAQQHQKYVLIGNSY-----HEAEKERHAIEVLIRQRCNALIVHSKALSDDELAQFMD----QIPGMVLINRVV-- 148 (346)
T ss_pred HHHHHHHHCCCEEEEEcCC-----CChHHHHHHHHHHHhcCCCEEEEeCCCCChHHHHHHHh----cCCCEEEEeccc--
Confidence 3455677889887643322 111111122221 267999999863211111111211 13 377787532
Q ss_pred HHHHhhhccCCCCceeecCCCC-CHHHHHHHhhhCCCCccEEEEEccCCCc-------hhHHHHHHhCCCeeeEeeeeee
Q 026235 141 IFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTT 212 (241)
Q Consensus 141 ~L~~~~~~~~~Gi~~~~~p~~~-t~e~L~~~l~~~~~~~~~iL~~~g~~~~-------~~L~~~L~~~G~~V~~~~vY~~ 212 (241)
... ++.. +..+.+ .....++.|.+.. .+++.++.|.... .-+.+.|++.|..+....++..
T Consensus 149 --~~~------~~~~-V~~D~~~~~~~a~~~L~~~G--~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~gi~~~~~~~~~~ 217 (346)
T PRK10401 149 --PGY------AHRC-VCLDNVSGARMATRMLLNNG--HQRIGYLSSSHGIEDDAMRRAGWMSALKEQGIIPPESWIGTG 217 (346)
T ss_pred --CCC------CCCE-EEECcHHHHHHHHHHHHHCC--CCeEEEEeCCCcCcchHHHHHHHHHHHHHcCCCCChhheecC
Confidence 112 3332 223333 2345566666553 4689888764321 2356788888877654434432
Q ss_pred ecCCCCh-HHHHHHc---CCCCEEEEEC
Q 026235 213 EPVHHVD-QTVLKQA---LSIPVVAVAS 236 (241)
Q Consensus 213 ~~~~~~~-~~~~~~l---~~id~IvFtS 236 (241)
....... ..+.+.+ ..+|+|+..+
T Consensus 218 ~~~~~~~~~~~~~~l~~~~~~~ai~~~n 245 (346)
T PRK10401 218 TPDMQGGEAAMVELLGRNLQLTAVFAYN 245 (346)
T ss_pred CCChHHHHHHHHHHHcCCCCCcEEEECC
Confidence 2211111 1222223 2478877655
No 113
>PRK09526 lacI lac repressor; Reviewed
Probab=78.89 E-value=21 Score=31.43 Aligned_cols=122 Identities=10% Similarity=0.055 Sum_probs=63.8
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~ 140 (241)
..+.+.++++|+++.....-. .+.+...+.+.. -..+|.||+.++..-......... ..+++++.++..
T Consensus 83 ~gi~~~a~~~g~~~~i~~~~~----~~~~~~~~~l~~l~~~~vdGiii~~~~~~~~~~~~~~~--~~~iPvV~~d~~--- 153 (342)
T PRK09526 83 AAIKSRADQLGYSVVISMVER----SGVEACQAAVNELLAQRVSGVIINVPLEDADAEKIVAD--CADVPCLFLDVS--- 153 (342)
T ss_pred HHHHHHHHHCCCEEEEEeCCC----ChHHHHHHHHHHHHhcCCCEEEEecCCCcchHHHHHhh--cCCCCEEEEecc---
Confidence 334566778898887543211 111111122211 268999998633221222121111 136788888752
Q ss_pred HHHHhhhccCCCCceeecCCCC-CHHHHHHHhhhCCCCccEEEEEccCCCc-------hhHHHHHHhCCCee
Q 026235 141 IFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEV 204 (241)
Q Consensus 141 ~L~~~~~~~~~Gi~~~~~p~~~-t~e~L~~~l~~~~~~~~~iL~~~g~~~~-------~~L~~~L~~~G~~V 204 (241)
... ++.. +..+.. .+..+++.|.+.. .++++++.|.... .-+.+.|++.|++.
T Consensus 154 --~~~------~~~~-V~~d~~~~~~~a~~~L~~~G--~~~I~~l~g~~~~~~~~~R~~Gf~~al~~~gi~~ 214 (342)
T PRK09526 154 --PQS------PVNS-VSFDPEDGTRLGVEHLVELG--HQRIALLAGPESSVSARLRLAGWLEYLTDYQLQP 214 (342)
T ss_pred --CCC------CCCE-EEECcHHHHHHHHHHHHHCC--CCeEEEEeCCCccccHHHHHHHHHHHHHHcCCCc
Confidence 122 3332 333433 3456677777653 4799999875432 23567788888764
No 114
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=78.43 E-value=6.2 Score=34.81 Aligned_cols=142 Identities=21% Similarity=0.274 Sum_probs=77.4
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcC-CCccEEEEe-----------CHHHHHHHHHHHHhcCC---C
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD-TIFDWIIIT-----------SPEAGSVFLEAWKEAGT---P 127 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l-~~~d~IiFT-----------S~~aV~~f~~~l~~~~~---~ 127 (241)
.+.-+.|.+.|++=+.+-...+.|..+.+.+.+.++.. ..++-|.+. +..-.+.+.+.+.+.-. .
T Consensus 61 ~eaL~~L~~~G~~~V~VQplhiipG~Ey~~l~~~v~~~~~~F~~i~~g~PLL~~~g~~~~~~D~~~va~aL~~~~~~~~~ 140 (262)
T PF06180_consen 61 EEALAKLADEGYTEVVVQPLHIIPGEEYEKLRATVEAYKHDFKKIVLGRPLLYTMGQENSPEDYEAVAEALAEEFPKKRK 140 (262)
T ss_dssp HHHHHHHHHCT--EEEEEE--SCSSHHHHHHHHHHHHHCCCSSEEEEE--SCSS-----SHHHHHHHHHHHHCCS-TT-T
T ss_pred HHHHHHHHHCCCCEEEEeecceeCcHhHHHHHHHHHHhhccCCeEEecccccccccccCChHHHHHHHHHHHHhccccCC
Confidence 34455667889887777777776655445555554332 456666654 56677778887765422 4
Q ss_pred CcEEEEeCHHHHH-------HHHHhhhccCCCCceeecC---CCCCHHHHHHHhhhCCCCc---cEEEEEccCCCch---
Q 026235 128 NVRIGVVGAGTAS-------IFEEVIQSSKCSLDVAFSP---SKATGKILASELPKNGKKK---CTVLYPASAKASN--- 191 (241)
Q Consensus 128 ~~~i~aIG~~Ta~-------~L~~~~~~~~~Gi~~~~~p---~~~t~e~L~~~l~~~~~~~---~~iL~~~g~~~~~--- 191 (241)
+-.++-+|.+|.. .|+..++. .|....++. ..++.+.+++.|.+...+. .+++++.|+...+
T Consensus 141 ~~a~vlmGHGt~h~an~~Y~~l~~~l~~--~~~~~v~vgtvEG~P~~~~vi~~L~~~g~k~V~L~PlMlVAGdHa~nDma 218 (262)
T PF06180_consen 141 DEAVVLMGHGTPHPANAAYSALQAMLKK--HGYPNVFVGTVEGYPSLEDVIARLKKKGIKKVHLIPLMLVAGDHAKNDMA 218 (262)
T ss_dssp TEEEEEEE---SCHHHHHHHHHHHHHHC--CT-TTEEEEETTSSSBHHHHHHHHHHHT-SEEEEEEESSS--HHHHCCCC
T ss_pred CCEEEEEeCCCCCCccHHHHHHHHHHHh--CCCCeEEEEEeCCCCCHHHHHHHHHhcCCCeEEEEecccccchhhhhhhc
Confidence 6778888887742 23333222 153323333 2457899998888654221 1445556654443
Q ss_pred -----hHHHHHHhCCCeeeE
Q 026235 192 -----EIEEGLSNRGFEVVR 206 (241)
Q Consensus 192 -----~L~~~L~~~G~~V~~ 206 (241)
..+..|++.|++|+.
T Consensus 219 Gde~dSWks~L~~~G~~v~~ 238 (262)
T PF06180_consen 219 GDEEDSWKSRLEAAGFEVTC 238 (262)
T ss_dssp SSSTTSHHHHHHHTT-EEEE
T ss_pred CCCcchHHHHHHHCCCEEEE
Confidence 458999999988743
No 115
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=78.30 E-value=24 Score=32.80 Aligned_cols=119 Identities=18% Similarity=0.169 Sum_probs=69.2
Q ss_pred CCCCCCeEEEeCCCCChHHHHHHHHHCCCcEEEece--------------EEEeeCC--CchHHHHHHhcCCCccEEEEe
Q 026235 46 ASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPL--------------IQHAQGP--DTDRLSSVLNADTIFDWIIIT 109 (241)
Q Consensus 46 ~~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~--------------~~~~~~~--~~~~l~~~l~~l~~~d~IiFT 109 (241)
.+...++|+|.....-+..+.+.|.++|.++..+-. +.+...+ +.+.+.+ . .+.++|+|+.+
T Consensus 227 ~~~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~-~-~~~~a~~vi~~ 304 (453)
T PRK09496 227 LEKPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEE-E-GIDEADAFIAL 304 (453)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHh-c-CCccCCEEEEC
Confidence 345578899998877778899999999988765511 1111111 1122222 1 45789999998
Q ss_pred CHHHHHHHHHHH--HhcCCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhh
Q 026235 110 SPEAGSVFLEAW--KEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (241)
Q Consensus 110 S~~aV~~f~~~l--~~~~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~ 172 (241)
+++.-.+..-.+ ++.+...+-+-+--+.-.+.++.. |+...+.|....+..+...+.
T Consensus 305 ~~~~~~n~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~------g~~~vi~p~~~~~~~~~~~~~ 363 (453)
T PRK09496 305 TNDDEANILSSLLAKRLGAKKVIALVNRPAYVDLVEGL------GIDIAISPRQATASEILRHVR 363 (453)
T ss_pred CCCcHHHHHHHHHHHHhCCCeEEEEECCcchHHHHHhc------CCCEEECHHHHHHHHHHHHhh
Confidence 876444433322 333333222233344445667777 988766666555566665554
No 116
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=78.28 E-value=38 Score=28.19 Aligned_cols=90 Identities=20% Similarity=0.259 Sum_probs=56.0
Q ss_pred CCeEEEeCCCCC-----hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCH-----HHHHHHHH
Q 026235 50 NPKVVVTRERGK-----NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP-----EAGSVFLE 119 (241)
Q Consensus 50 g~~VLitR~~~~-----~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~-----~aV~~f~~ 119 (241)
+.+|++...... ..-+...|+.+|++|+.+.. .. ..+++.+.+. -.++|.|.+++. ..++.+.+
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~----~~-p~~~l~~~~~-~~~~d~v~lS~~~~~~~~~~~~~i~ 155 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGR----DV-PPEEFVEAVK-EHKPDILGLSALMTTTMGGMKEVIE 155 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCC----CC-CHHHHHHHHH-HcCCCEEEEeccccccHHHHHHHHH
Confidence 457777766543 33456688999999977651 11 2345555553 368888887762 34445555
Q ss_pred HHHhcCC-CCcEEEEeCHHHHHHHHHh
Q 026235 120 AWKEAGT-PNVRIGVVGAGTASIFEEV 145 (241)
Q Consensus 120 ~l~~~~~-~~~~i~aIG~~Ta~~L~~~ 145 (241)
.+++.+. +++++++-|......+.+.
T Consensus 156 ~lr~~~~~~~~~i~vGG~~~~~~~~~~ 182 (201)
T cd02070 156 ALKEAGLRDKVKVMVGGAPVNQEFADE 182 (201)
T ss_pred HHHHCCCCcCCeEEEECCcCCHHHHHH
Confidence 5655543 4789999997665555444
No 117
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=78.11 E-value=7.4 Score=30.38 Aligned_cols=83 Identities=19% Similarity=0.258 Sum_probs=50.6
Q ss_pred ChHHHHHHHHHCCCcEEEeceEE--Ee-eCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeC
Q 026235 61 KNGKLIKALAKHRIDCLELPLIQ--HA-QGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVG 135 (241)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~P~~~--~~-~~~~~~~l~~~l~~--l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG 135 (241)
....+.+.|+.+|+++...|... .+ ...|..-....++. .+.+|.+|+-|..+ -|...++...-.++++..+|
T Consensus 53 ~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~D~~l~~d~~~~~~~~~~d~ivLvSgD~--Df~~~i~~lr~~G~~V~v~~ 130 (149)
T cd06167 53 RQRGFLDALRRLGFEPIQKPLRTRGSGKKGVDVALAIDALELAYKRRIDTIVLVSGDS--DFVPLVERLRELGKRVIVVG 130 (149)
T ss_pred hHHHHHHHHHHCCcEEEEEcceecCCcccCccHHHHHHHHHHhhhcCCCEEEEEECCc--cHHHHHHHHHHcCCEEEEEc
Confidence 56789999999999999999874 22 22232221222221 24688888888766 34444333222367777777
Q ss_pred H--HHHHHHHHh
Q 026235 136 A--GTASIFEEV 145 (241)
Q Consensus 136 ~--~Ta~~L~~~ 145 (241)
. .+...|++.
T Consensus 131 ~~~~~s~~L~~~ 142 (149)
T cd06167 131 FEAKTSRELRKA 142 (149)
T ss_pred cCccChHHHHHh
Confidence 6 577777665
No 118
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=77.95 E-value=30 Score=30.20 Aligned_cols=65 Identities=11% Similarity=0.159 Sum_probs=35.8
Q ss_pred HHHHHHHHH--CCCcEEEeceEEEeeCCCch----HHHHHHhcCCCccEEEEeC--HHHHHHHHHHHHhcCCCCcEEEEe
Q 026235 63 GKLIKALAK--HRIDCLELPLIQHAQGPDTD----RLSSVLNADTIFDWIIITS--PEAGSVFLEAWKEAGTPNVRIGVV 134 (241)
Q Consensus 63 ~~l~~~L~~--~G~~v~~~P~~~~~~~~~~~----~l~~~l~~l~~~d~IiFTS--~~aV~~f~~~l~~~~~~~~~i~aI 134 (241)
..+.+.+++ .|+++...+.- .+.+ .+...+ ...+|.||+.. +.++......+.. .+++++++
T Consensus 19 ~gi~~~a~~~~~g~~~~~~~~~-----~~~~~q~~~i~~l~--~~~vdgiii~~~~~~~~~~~~~~~~~---~giPvV~~ 88 (303)
T cd01539 19 KNLEDIQKENGGKVEFTFYDAK-----NNQSTQNEQIDTAL--AKGVDLLAVNLVDPTAAQTVINKAKQ---KNIPVIFF 88 (303)
T ss_pred HHHHHHHHhhCCCeeEEEecCC-----CCHHHHHHHHHHHH--HcCCCEEEEecCchhhHHHHHHHHHH---CCCCEEEe
Confidence 345566777 66666555431 1211 233333 25899998864 3334444444443 35789998
Q ss_pred CHH
Q 026235 135 GAG 137 (241)
Q Consensus 135 G~~ 137 (241)
+..
T Consensus 89 ~~~ 91 (303)
T cd01539 89 NRE 91 (303)
T ss_pred CCC
Confidence 864
No 119
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=77.94 E-value=30 Score=29.76 Aligned_cols=123 Identities=12% Similarity=0.085 Sum_probs=63.6
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHH--HHHHHHHHHHhcCCCCcEEEEeCHHHHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~--aV~~f~~~l~~~~~~~~~i~aIG~~Ta~ 140 (241)
..+.+.++++|+++.......- +......++..+ -..+|+||+++.. .+...++.+.+ .++++++++.....
T Consensus 19 ~gi~~~a~~~g~~~~~~~~~~~-~~~~~~~i~~~~--~~~vdgiii~~~~~~~~~~~l~~l~~---~~ipvV~~~~~~~~ 92 (288)
T cd01538 19 PNFEAALKELGAEVIVQNANGD-PAKQISQIENMI--AKGVDVLVIAPVDGEALASAVEKAAD---AGIPVIAYDRLILN 92 (288)
T ss_pred HHHHHHHHHcCCEEEEECCCCC-HHHHHHHHHHHH--HcCCCEEEEecCChhhHHHHHHHHHH---CCCCEEEECCCCCC
Confidence 3456678889999887554210 000012233333 2579999998643 33444444443 46889999864311
Q ss_pred HHHHhhhccCCCCceeecCCCC-CHHHHHHHhhhC----CCCccEEEEEccCCCch-------hHHHHHHhCC
Q 026235 141 IFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKN----GKKKCTVLYPASAKASN-------EIEEGLSNRG 201 (241)
Q Consensus 141 ~L~~~~~~~~~Gi~~~~~p~~~-t~e~L~~~l~~~----~~~~~~iL~~~g~~~~~-------~L~~~L~~~G 201 (241)
. .....+..+.+ .+..+.+.|.+. ....++++++.|..... -+.+.|++.|
T Consensus 93 ----~------~~~~~v~~d~~~~g~~~~~~l~~~~~~~~~g~~~i~~l~g~~~~~~~~~R~~gf~~~l~~~~ 155 (288)
T cd01538 93 ----S------NVDYYVSFDNEKVGELQGQALVDGLGAKGKPPGNIELIAGSPTDNNAKLFFNGAMSVLKPLI 155 (288)
T ss_pred ----C------CcceEEEeChHHHHHHHHHHHHHHHhhcCCCCceEEEEECCCCCchHHHHHHHHHHHHHhcc
Confidence 1 11111222222 344455555544 12346899887754322 2356777766
No 120
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=77.67 E-value=18 Score=30.82 Aligned_cols=124 Identities=10% Similarity=0.060 Sum_probs=64.7
Q ss_pred HHHHHHHHCCCcEEEeceEEEeeCCCch----HHHHHHhcCCCccEEEEeCHH--HHHHHHHHHHhcCCCCcEEEEeCHH
Q 026235 64 KLIKALAKHRIDCLELPLIQHAQGPDTD----RLSSVLNADTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAG 137 (241)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~----~l~~~l~~l~~~d~IiFTS~~--aV~~f~~~l~~~~~~~~~i~aIG~~ 137 (241)
.+.+.++++|+++.....-. ..+.+ .+...+ -..+|.||+.+.. ... ....+.+ .++++++++..
T Consensus 20 gi~~~a~~~g~~~~~~~~~~---~~~~~~~~~~i~~~~--~~~vdgiI~~~~~~~~~~-~~~~~~~---~giPvV~~~~~ 90 (268)
T cd06306 20 GMVEEAKRLGVSLKLLEAGG---YPNLAKQIAQLEDCA--AWGADAILLGAVSPDGLN-EILQQVA---ASIPVIALVND 90 (268)
T ss_pred HHHHHHHHcCCEEEEecCCC---CCCHHHHHHHHHHHH--HcCCCEEEEcCCChhhHH-HHHHHHH---CCCCEEEeccC
Confidence 45567788898876653211 11111 223322 2589999998643 222 2333333 46888888643
Q ss_pred HHHHHHHhhhccCCCCceeecCCCC-CHHHHHHHhhhCCC---CccEEEEEccCCCc-------hhHHHHHHhCCCeeeE
Q 026235 138 TASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGK---KKCTVLYPASAKAS-------NEIEEGLSNRGFEVVR 206 (241)
Q Consensus 138 Ta~~L~~~~~~~~~Gi~~~~~p~~~-t~e~L~~~l~~~~~---~~~~iL~~~g~~~~-------~~L~~~L~~~G~~V~~ 206 (241)
.. .. +....+..+.+ ....+++.|.+... ..++++++.|.... .-+.+.|++.|+++..
T Consensus 91 ~~----~~------~~~~~V~~d~~~~g~~~~~~l~~~g~~~~~~~~i~~l~g~~~~~~~~~R~~g~~~~~~~~~~~~~~ 160 (268)
T cd06306 91 IN----SP------DITAKVGVSWYEMGYQAGEYLAQRHPKGSKPAKVAWFPGPKGAGWVKAVEKGFRDALAGSAIEISA 160 (268)
T ss_pred CC----Cc------ceeEEecCChHHHHHHHHHHHHHHhhcCCCCceEEEEeCCCCCchHHHHHHHHHHHHhhcCcEEee
Confidence 21 12 22112223322 23455565654432 12699999875433 2356778778776544
No 121
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=77.64 E-value=25 Score=31.43 Aligned_cols=159 Identities=19% Similarity=0.167 Sum_probs=85.2
Q ss_pred EEEeCCCCChHHH----HHHHHHCCCcEEEeceEEEeeCCCchHHHHHHh---cCCCccEEEEeCHH--HHH--HHHHHH
Q 026235 53 VVVTRERGKNGKL----IKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN---ADTIFDWIIITSPE--AGS--VFLEAW 121 (241)
Q Consensus 53 VLitR~~~~~~~l----~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~---~l~~~d~IiFTS~~--aV~--~f~~~l 121 (241)
++.....+.+..+ .+.+++.|+++..+-+-+. ...+++.+.++ .....|.|+.--|= .++ ..++.+
T Consensus 36 iI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~---~~~~el~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I 112 (285)
T PRK14191 36 VILVGKDPASQTYVNMKIKACERVGMDSDLHTLQEN---TTEAELLSLIKDLNTDQNIDGILVQLPLPRHIDTKMVLEAI 112 (285)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCC---CCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcC
Confidence 4445544443333 4456777987765544221 12234444454 34678999998772 211 122222
Q ss_pred HhcCCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCC--CCccEEEEEccC-CCchhHHHHHH
Q 026235 122 KEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYPASA-KASNEIEEGLS 198 (241)
Q Consensus 122 ~~~~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~--~~~~~iL~~~g~-~~~~~L~~~L~ 198 (241)
. +.+-+=++.+.-...|- . |-. .+.| -|+.+.++.|..+. ..|++++++-.. ....-+...|.
T Consensus 113 ~----p~KDVDGl~~~n~g~l~-~------g~~-~~~P--cTp~avi~lL~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~ 178 (285)
T PRK14191 113 D----PNKDVDGFHPLNIGKLC-S------QLD-GFVP--ATPMGVMRLLKHYHIEIKGKDVVIIGASNIVGKPLAMLML 178 (285)
T ss_pred C----ccccccccChhhHHHHh-c------CCC-CCCC--CcHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHH
Confidence 1 11222222233222221 2 322 2444 58899998887653 457888877554 44556888888
Q ss_pred hCCCeeeEeeeeeeecCCCChHHHHHHcCCCCEEEEEC
Q 026235 199 NRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVAS 236 (241)
Q Consensus 199 ~~G~~V~~~~vY~~~~~~~~~~~~~~~l~~id~IvFtS 236 (241)
++|++|.-+.-. ..++.+.+.+.|+|+-..
T Consensus 179 ~~gAtVtv~hs~--------t~~l~~~~~~ADIvV~Av 208 (285)
T PRK14191 179 NAGASVSVCHIL--------TKDLSFYTQNADIVCVGV 208 (285)
T ss_pred HCCCEEEEEeCC--------cHHHHHHHHhCCEEEEec
Confidence 999998765322 122333346778777554
No 122
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=77.60 E-value=18 Score=32.16 Aligned_cols=161 Identities=15% Similarity=0.095 Sum_probs=88.6
Q ss_pred CeEEEeCCCCChHHH----HHHHHHCCCcEEEeceEEEeeCCCchHHHHHH---hcCCCccEEEEeCH--HHHHH--HHH
Q 026235 51 PKVVVTRERGKNGKL----IKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NADTIFDWIIITSP--EAGSV--FLE 119 (241)
Q Consensus 51 ~~VLitR~~~~~~~l----~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l---~~l~~~d~IiFTS~--~aV~~--f~~ 119 (241)
.-|+.....+.+..+ .+.+++.|++....++-+... .+++.+.+ +...+++.++.|-| ..+.. +++
T Consensus 36 L~~i~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~---~~~l~~~i~~Ln~d~~v~Gi~VqlPlp~~i~~~~~ld 112 (283)
T PRK14192 36 LATILVGDDPASATYVRMKGNACRRVGMDSLKVELPQETT---TEQLLAKIEELNANPDVHGILLQHPVPAQIDERACFD 112 (283)
T ss_pred EEEEEeCCChhHHHHHHHHHHHHHHcCCeEEEEECCCCCC---HHHHHHHHHHHhCCCCCCEEEEeCCCccccCHHHHHh
Confidence 335555555444433 346778899988887733221 22333333 34457999999998 33333 444
Q ss_pred HHHhc-CCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhC--CCCccEEEEEccCC-CchhHHH
Q 026235 120 AWKEA-GTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN--GKKKCTVLYPASAK-ASNEIEE 195 (241)
Q Consensus 120 ~l~~~-~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~--~~~~~~iL~~~g~~-~~~~L~~ 195 (241)
.+... ..+++.-+-.|.-. . |- ..+.| -|..++++.|..+ ...|++++++-... ...-+..
T Consensus 113 ~I~~aKDVdg~n~~n~G~l~------~------~~-~~~~p--~T~~gii~~L~~~~i~l~Gk~vvViG~gg~vGkpia~ 177 (283)
T PRK14192 113 AISLAKDVDGVTCLGFGRMA------M------GE-AAYGS--ATPAGIMRLLKAYNIELAGKHAVVVGRSAILGKPMAM 177 (283)
T ss_pred ccCHHHhcCCCCccccCccc------c------CC-CcccC--CcHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHH
Confidence 33211 12333322244211 1 21 11233 3569999888765 34678888875554 5556788
Q ss_pred HHHhCCCeeeEeeeeeeecCCCChHHHHHHcCCCCEEEEECC
Q 026235 196 GLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASP 237 (241)
Q Consensus 196 ~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~l~~id~IvFtSp 237 (241)
.|.++|++|. ++.+ ....+.+.+.+.|+|+-+.+
T Consensus 178 ~L~~~gatVt---v~~~-----~t~~L~~~~~~aDIvI~AtG 211 (283)
T PRK14192 178 MLLNANATVT---ICHS-----RTQNLPELVKQADIIVGAVG 211 (283)
T ss_pred HHHhCCCEEE---EEeC-----CchhHHHHhccCCEEEEccC
Confidence 8888887554 3332 12233444578888887653
No 123
>PRK07825 short chain dehydrogenase; Provisional
Probab=77.53 E-value=44 Score=28.48 Aligned_cols=82 Identities=17% Similarity=0.057 Sum_probs=48.2
Q ss_pred CCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEE--EeCHHHHHHHHHHHHh
Q 026235 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII--ITSPEAGSVFLEAWKE 123 (241)
Q Consensus 47 ~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~Ii--FTS~~aV~~f~~~l~~ 123 (241)
.+.|++||||....+ +..+.+.|.+.|+.+.... .+.+.+.+....+....++. ++++.+++.+++.+.+
T Consensus 2 ~~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~-------r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 74 (273)
T PRK07825 2 DLRGKVVAITGGARGIGLATARALAALGARVAIGD-------LDEALAKETAAELGLVVGGPLDVTDPASFAAFLDAVEA 74 (273)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEE-------CCHHHHHHHHHHhccceEEEccCCCHHHHHHHHHHHHH
Confidence 356899999988653 6678888889998765321 12222332222223233332 4788898888887655
Q ss_pred c-CCCCcEEEEeC
Q 026235 124 A-GTPNVRIGVVG 135 (241)
Q Consensus 124 ~-~~~~~~i~aIG 135 (241)
. +.-+.-|.+.|
T Consensus 75 ~~~~id~li~~ag 87 (273)
T PRK07825 75 DLGPIDVLVNNAG 87 (273)
T ss_pred HcCCCCEEEECCC
Confidence 3 22234444544
No 124
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=77.25 E-value=43 Score=28.23 Aligned_cols=158 Identities=11% Similarity=0.061 Sum_probs=0.0
Q ss_pred HHHHHHHHH--CCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHH
Q 026235 63 GKLIKALAK--HRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (241)
Q Consensus 63 ~~l~~~L~~--~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~ 140 (241)
..+.+.+++ +|+.+...+. .-.+......++..+. ..+|.||+.+ .......+.+......+++++.+|..
T Consensus 19 ~gi~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~--~~~dgiIi~~-~~~~~~~~~i~~~~~~~ipvv~~~~~--- 91 (271)
T cd06321 19 KGAEAAAKKLNPGVKVTVVSA-DYDLNKQVSQIDNFIA--AKVDLILLNA-VDSKGIAPAVKRAQAAGIVVVAVDVA--- 91 (271)
T ss_pred HHHHHHHHHhCCCeEEEEccC-CCCHHHHHHHHHHHHH--hCCCEEEEeC-CChhHhHHHHHHHHHCCCeEEEecCC---
Q ss_pred HHHHhhhccCCCCceeecCCCCCH-HHHHHHhhhCCCCccEEEEEccCCCc------hhHHHHHHhC-CCeeeEeeeeee
Q 026235 141 IFEEVIQSSKCSLDVAFSPSKATG-KILASELPKNGKKKCTVLYPASAKAS------NEIEEGLSNR-GFEVVRLNTYTT 212 (241)
Q Consensus 141 ~L~~~~~~~~~Gi~~~~~p~~~t~-e~L~~~l~~~~~~~~~iL~~~g~~~~------~~L~~~L~~~-G~~V~~~~vY~~ 212 (241)
.. +....+..+.+.+ +.+++.+.+.....+++.++.|.... .-+.+.+++. |.+......+..
T Consensus 92 ---~~------~~~~~V~~d~~~~g~~~~~~l~~~~~g~~~i~~i~g~~~~~~~~R~~g~~~~~~~~~~~~~~~~~~~~~ 162 (271)
T cd06321 92 ---AE------GADATVTTDNVQAGEISCQYLADRLGGKGNVAILNGPPVSAVLDRVAGCKAALAKYPGIKLLSDDQNGK 162 (271)
T ss_pred ---CC------CccceeeechHHHHHHHHHHHHHHhCCCceEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEeeecCCC
Q ss_pred ecCCCChHHHHHHc---CCCCEEEEEC
Q 026235 213 EPVHHVDQTVLKQA---LSIPVVAVAS 236 (241)
Q Consensus 213 ~~~~~~~~~~~~~l---~~id~IvFtS 236 (241)
.........+.+.+ ..+++|+.++
T Consensus 163 ~~~~~~~~~~~~~l~~~~~~~ai~~~~ 189 (271)
T cd06321 163 GSRDGGLRVMQGLLTRFPKLDGVFAIN 189 (271)
T ss_pred CChhhHHHHHHHHHHhCCCCCEEEECC
No 125
>PRK06703 flavodoxin; Provisional
Probab=76.18 E-value=7.6 Score=30.61 Aligned_cols=63 Identities=16% Similarity=0.157 Sum_probs=38.0
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCH--------HHHHHHHHHHHhcCCCCcEEEEe
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP--------EAGSVFLEAWKEAGTPNVRIGVV 134 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~--------~aV~~f~~~l~~~~~~~~~i~aI 134 (241)
+.+++.|++.|.++....+-+. +. ..+.++|.|+|-|+ ..+..|++.+....+.+.+++++
T Consensus 20 ~~ia~~l~~~g~~v~~~~~~~~----~~-------~~l~~~d~viigspt~~~g~~p~~~~~f~~~l~~~~l~~k~~~vf 88 (151)
T PRK06703 20 DLIKVSLDAFDHEVVLQEMDGM----DA-------EELLAYDGIILGSYTWGDGDLPYEAEDFHEDLENIDLSGKKVAVF 88 (151)
T ss_pred HHHHHHHHhcCCceEEEehhhC----CH-------HHHhcCCcEEEEECCCCCCcCcHHHHHHHHHHhcCCCCCCEEEEE
Confidence 3344556666777665443221 11 12467899999663 35777777776555567788888
Q ss_pred CH
Q 026235 135 GA 136 (241)
Q Consensus 135 G~ 136 (241)
|-
T Consensus 89 g~ 90 (151)
T PRK06703 89 GS 90 (151)
T ss_pred cc
Confidence 74
No 126
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=75.82 E-value=14 Score=30.22 Aligned_cols=76 Identities=17% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcC--CCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeC-HH-H
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD--TIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVG-AG-T 138 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l--~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG-~~-T 138 (241)
..+.+.|..+|+++. ......|..-.-++++-+ +.+|.+++.|..+ -|...+....-.++++.++| +. |
T Consensus 69 ~~l~~~l~~~Gf~pv-----~~kG~~Dv~laIDame~~~~~~iD~~vLvSgD~--DF~~Lv~~lre~G~~V~v~g~~~~t 141 (160)
T TIGR00288 69 DKLIEAVVNQGFEPI-----IVAGDVDVRMAVEAMELIYNPNIDAVALVTRDA--DFLPVINKAKENGKETIVIGAEPGF 141 (160)
T ss_pred HHHHHHHHHCCceEE-----EecCcccHHHHHHHHHHhccCCCCEEEEEeccH--hHHHHHHHHHHCCCEEEEEeCCCCC
Q ss_pred HHHHHHh
Q 026235 139 ASIFEEV 145 (241)
Q Consensus 139 a~~L~~~ 145 (241)
+..|++.
T Consensus 142 s~~L~~a 148 (160)
T TIGR00288 142 STALQNS 148 (160)
T ss_pred hHHHHHh
No 127
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=75.80 E-value=8.3 Score=29.49 Aligned_cols=63 Identities=10% Similarity=0.183 Sum_probs=37.4
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHH---------HHHHHHHHHHhcCCCCcEEEE
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE---------AGSVFLEAWKEAGTPNVRIGV 133 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~---------aV~~f~~~l~~~~~~~~~i~a 133 (241)
+.+.+.+.+.|+++...++-+.. .. .+.++|.|||-||. .++.|++.+....+.++++++
T Consensus 17 ~~i~~~~~~~g~~v~~~~~~~~~----~~-------~l~~~d~iilgspty~~g~~p~~~~~~f~~~l~~~~~~gk~~~v 85 (140)
T TIGR01753 17 NIIAEGLKEAGAEVDLLEVADAD----AE-------DLLSYDAVLLGCSTWGDEDLEQDDFEPFFEELEDIDLGGKKVAL 85 (140)
T ss_pred HHHHHHHHhcCCeEEEEEcccCC----HH-------HHhcCCEEEEEcCCCCCCCCCcchHHHHHHHhhhCCCCCCEEEE
Confidence 34445566678777655443221 11 23568999998865 234666666554456777777
Q ss_pred eCH
Q 026235 134 VGA 136 (241)
Q Consensus 134 IG~ 136 (241)
+|-
T Consensus 86 fgt 88 (140)
T TIGR01753 86 FGS 88 (140)
T ss_pred Eec
Confidence 763
No 128
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=75.73 E-value=12 Score=27.34 Aligned_cols=55 Identities=11% Similarity=0.042 Sum_probs=31.3
Q ss_pred EEEEEccC-CCchhHHHHHHhCCCeeeEeeeeeeecCCCChHHHHHHcCCCCEEEEEC
Q 026235 180 TVLYPASA-KASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVAS 236 (241)
Q Consensus 180 ~iL~~~g~-~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~l~~id~IvFtS 236 (241)
+||++-|. .....+.+.+++.|+++... .+..........+...+.+.|+|++..
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~h--g~~~~~~~~~~~l~~~i~~aD~VIv~t 56 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHH--GRDGGDEKKASRLPSKIKKADLVIVFT 56 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEE--ecCCCCccchhHHHHhcCCCCEEEEEe
Confidence 36777663 34467888888888766544 222222222223444557778876543
No 129
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=75.65 E-value=3.5 Score=32.35 Aligned_cols=59 Identities=19% Similarity=0.216 Sum_probs=37.5
Q ss_pred EEEEEccCCCc--------hhHHHHHHhCCCeeeEeeeeeee-c-----------CCCChHHHHHHcCCCCEEEEECCc
Q 026235 180 TVLYPASAKAS--------NEIEEGLSNRGFEVVRLNTYTTE-P-----------VHHVDQTVLKQALSIPVVAVASPS 238 (241)
Q Consensus 180 ~iL~~~g~~~~--------~~L~~~L~~~G~~V~~~~vY~~~-~-----------~~~~~~~~~~~l~~id~IvFtSps 238 (241)
||+++.|.... +.+.+.|++.|+++..+.+.+.. + ..+...++.+.+...|+|+|.||.
T Consensus 2 kilii~gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~~sP~ 80 (152)
T PF03358_consen 2 KILIINGSPRKNSNTRKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGIIFASPV 80 (152)
T ss_dssp EEEEEESSSSTTSHHHHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEEEEEE
T ss_pred EEEEEECcCCCCCHHHHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEEEeecE
Confidence 46666665431 35677777778888888777651 1 111123445556789999999984
No 130
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=75.65 E-value=10 Score=36.33 Aligned_cols=66 Identities=11% Similarity=0.087 Sum_probs=42.4
Q ss_pred CCCCCCeEEEeCCCC-----------------ChHHHHHHHHHCCCcEEEec-------e--EEEeeCCCchHHHHHHhc
Q 026235 46 ASNSNPKVVVTRERG-----------------KNGKLIKALAKHRIDCLELP-------L--IQHAQGPDTDRLSSVLNA 99 (241)
Q Consensus 46 ~~l~g~~VLitR~~~-----------------~~~~l~~~L~~~G~~v~~~P-------~--~~~~~~~~~~~l~~~l~~ 99 (241)
.++.|++||||-+.. .+..+++.+..+|++|..+. . +++.+.....++.+.+..
T Consensus 252 ~~l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~~~~p~~v~~i~V~ta~eM~~av~~ 331 (475)
T PRK13982 252 KPLAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVDLADPQGVKVIHVESARQMLAAVEA 331 (475)
T ss_pred cccCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCcCCCCCCCceEEEecCHHHHHHHHHh
Confidence 468899999997642 14678889999999998763 1 123333344555555544
Q ss_pred CCCccEEEEeCH
Q 026235 100 DTIFDWIIITSP 111 (241)
Q Consensus 100 l~~~d~IiFTS~ 111 (241)
.-.+|++|++-+
T Consensus 332 ~~~~Di~I~aAA 343 (475)
T PRK13982 332 ALPADIAIFAAA 343 (475)
T ss_pred hCCCCEEEEecc
Confidence 344787776543
No 131
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=75.34 E-value=16 Score=31.00 Aligned_cols=127 Identities=17% Similarity=0.130 Sum_probs=63.1
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhc--CCCccEEEEeCHH--HHHHHHHHHHhcCCCCcEEEEeCHHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGT 138 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~--aV~~f~~~l~~~~~~~~~i~aIG~~T 138 (241)
..+.+.++++|.++.....-. .+.+...+.++. ...+|+||+++.. .+...++.+.+ .++++++++..-
T Consensus 20 ~g~~~~~~~~g~~v~~~~~~~----~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~l~~~~~---~~ipvV~~~~~~ 92 (271)
T cd06312 20 NGAEDAAKDLGVDVEYRGPET----FDVADMARLIEAAIAAKPDGIVVTIPDPDALDPAIKRAVA---AGIPVISFNAGD 92 (271)
T ss_pred HHHHHHHHHhCCEEEEECCCC----CCHHHHHHHHHHHHHhCCCEEEEeCCChHHhHHHHHHHHH---CCCeEEEeCCCC
Confidence 345566777888877553321 022212222221 2579999998753 23334444443 358899997532
Q ss_pred HHHHHHhhhccCCCCceeecCC-CCCHHHHHHHhhhCCCCccEEEEEccCCCc-------hhHHHHHHhCCCee
Q 026235 139 ASIFEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEV 204 (241)
Q Consensus 139 a~~L~~~~~~~~~Gi~~~~~p~-~~t~e~L~~~l~~~~~~~~~iL~~~g~~~~-------~~L~~~L~~~G~~V 204 (241)
...-... ++. .+..+ ......+++.|.+. ...++++++.|.... .-+.+.++++|+.+
T Consensus 93 ~~~~~~~------~~~-~V~~d~~~~g~~~~~~l~~~-~g~~~i~~i~g~~~~~~~~~r~~g~~~~~~~~~~~~ 158 (271)
T cd06312 93 PKYKELG------ALA-YVGQDEYAAGEAAGERLAEL-KGGKNVLCVIHEPGNVTLEDRCAGFADGLGGAGITE 158 (271)
T ss_pred Ccccccc------ceE-EeccChHHHHHHHHHHHHHh-cCCCeEEEEecCCCCccHHHHHHHHHHHHHhcCcee
Confidence 1100001 111 12222 23345566666662 234688888764322 23455666666543
No 132
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=74.79 E-value=39 Score=34.18 Aligned_cols=100 Identities=17% Similarity=0.138 Sum_probs=63.9
Q ss_pred hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHH-----HHHHHHHHHHhcCCCCcEEEEeC-
Q 026235 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE-----AGSVFLEAWKEAGTPNVRIGVVG- 135 (241)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~-----aV~~f~~~l~~~~~~~~~i~aIG- 135 (241)
..-....|+..|++|..-..+. ..+++.+.. ...+.|.|+++|.. .+..+.+.+++.+.+++++++=|
T Consensus 599 a~fv~~~l~~~GfeV~~~~~~~-----s~e~~v~aa-~~~~a~ivvlcs~d~~~~e~~~~l~~~Lk~~G~~~v~vl~GG~ 672 (714)
T PRK09426 599 AKVIATAFADLGFDVDIGPLFQ-----TPEEAARQA-VENDVHVVGVSSLAAGHKTLVPALIEALKKLGREDIMVVVGGV 672 (714)
T ss_pred HHHHHHHHHhCCeeEecCCCCC-----CHHHHHHHH-HHcCCCEEEEeccchhhHHHHHHHHHHHHhcCCCCcEEEEeCC
Confidence 3445667889999995333221 223333333 23688999999866 45566677777775667777554
Q ss_pred --HHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhC
Q 026235 136 --AGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (241)
Q Consensus 136 --~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~ 174 (241)
+...+.+++. |+...+ ..+.+...+++.+.+.
T Consensus 673 ~~~~~~~~l~~a------GvD~~i-~~g~d~~~~L~~l~~~ 706 (714)
T PRK09426 673 IPPQDYDFLYEA------GVAAIF-GPGTVIADAAIDLLEL 706 (714)
T ss_pred CChhhHHHHHhC------CCCEEE-CCCCCHHHHHHHHHHH
Confidence 4445678888 998644 4456777777777543
No 133
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=74.68 E-value=45 Score=31.43 Aligned_cols=143 Identities=11% Similarity=0.096 Sum_probs=82.4
Q ss_pred CChHHHHHHHHHCCCcEEEeceEEE-------------eeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHh-cC
Q 026235 60 GKNGKLIKALAKHRIDCLELPLIQH-------------AQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE-AG 125 (241)
Q Consensus 60 ~~~~~l~~~L~~~G~~v~~~P~~~~-------------~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~-~~ 125 (241)
.+..++.+.|++.|+++..+|-+.. .+..+ ..+++ +...+...+-+..++.+ ....+.+++ .+
T Consensus 181 ~d~~elk~lL~~~Gl~~~~l~d~s~~ld~~~~~~~~~~~~~gg-~t~ee-i~~~~~A~lniv~~~~~-~~~a~~Lee~~g 257 (432)
T TIGR01285 181 GDIEELRRMVEAFGLKPIILPDLSRSLDGHLADDDFSPITQGG-TTLEQ-IRQIGQSCCTLAIGESM-RRAASLLADRCG 257 (432)
T ss_pred cCHHHHHHHHHHcCCceEEecccccccCCCCCCCccceeCCCC-CcHHH-HHhhccCcEEEEEChhH-HHHHHHHHHHHC
Confidence 4578999999999999987764321 01111 11222 23445556655567765 566777765 34
Q ss_pred CCCcEE-EEeCH-HHHHHHHHhhhccCCCCceeecCCCC--CHHHHHHHhhhC--CCCccEEEEEccCCCchhHHHHHHh
Q 026235 126 TPNVRI-GVVGA-GTASIFEEVIQSSKCSLDVAFSPSKA--TGKILASELPKN--GKKKCTVLYPASAKASNEIEEGLSN 199 (241)
Q Consensus 126 ~~~~~i-~aIG~-~Ta~~L~~~~~~~~~Gi~~~~~p~~~--t~e~L~~~l~~~--~~~~~~iL~~~g~~~~~~L~~~L~~ 199 (241)
.+-+.. .-+|. .|.+.|++. ..++|..+ |+.. .-+-+.+.|.+. ...|+|+.+..+....-.+.+.|.+
T Consensus 258 iP~~~~~~p~G~~~t~~~l~~l--~~~~g~~~---~~~~~~~r~~~~~~l~~~~~~l~Gkrvai~~~~~~~~~l~~~l~e 332 (432)
T TIGR01285 258 VPYIVFPSLMGLEAVDAFLHVL--MKISGRAV---PERFERQRRQLQDAMLDTHFFLGGKKVAIAAEPDLLAAWATFFTS 332 (432)
T ss_pred CCeEecCCCcChHHHHHHHHHH--HHHHCCCc---cHHHHHHHHHHHHHHHHHHHhhCCCEEEEEcCHHHHHHHHHHHHH
Confidence 443322 23675 566666665 22236532 2111 112244444332 2357898877554433568999999
Q ss_pred CCCeeeEeeee
Q 026235 200 RGFEVVRLNTY 210 (241)
Q Consensus 200 ~G~~V~~~~vY 210 (241)
.|.++..+.++
T Consensus 333 lGm~v~~~~~~ 343 (432)
T TIGR01285 333 MGAQIVAAVTT 343 (432)
T ss_pred CCCEEEEEEeC
Confidence 99999888876
No 134
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=74.61 E-value=41 Score=28.25 Aligned_cols=151 Identities=9% Similarity=0.053 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcC--CCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD--TIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l--~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~ 140 (241)
+.+.+.++++|+++... ....+.+...+.++.+ ..+|.||+++...-......... +++++.+|....
T Consensus 19 ~~i~~~~~~~g~~~~~~-----~~~~~~~~~~~~i~~l~~~~~dgiii~~~~~~~~~~~~~~~----~iPvV~~~~~~~- 88 (263)
T cd06280 19 RAVEDAAYRAGLRVILC-----NTDEDPEKEAMYLELMEEERVTGVIFAPTRATLRRLAELRL----SFPVVLIDRAGP- 88 (263)
T ss_pred HHHHHHHHHCCCEEEEE-----eCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCCchHHHHHhc----CCCEEEECCCCC-
Q ss_pred HHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEccCCC------chhHHHHHHhCCCeeeEeeeeeeec
Q 026235 141 IFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA------SNEIEEGLSNRGFEVVRLNTYTTEP 214 (241)
Q Consensus 141 ~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~~~~~~iL~~~g~~~------~~~L~~~L~~~G~~V~~~~vY~~~~ 214 (241)
.. .+..........+..+++.|.+... +++.++.|... ..-+.+.+++.|.......+ ...
T Consensus 89 ---~~------~~~~v~~d~~~~g~~a~~~L~~~g~--~~i~~~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~--~~~ 155 (263)
T cd06280 89 ---AG------RVDAVVLDNRAAARTLVEHLVAQGY--RRIGGLFGNASTTGAERRAGYEDAMRRHGLAPDARFV--APT 155 (263)
T ss_pred ---CC------CCCEEEECcHHHHHHHHHHHHHCCC--ceEEEEeCCCCCCHHHHHHHHHHHHHHcCCCCChhhc--ccC
Q ss_pred CCCChHHHHHHc---CCCCEEEEEC
Q 026235 215 VHHVDQTVLKQA---LSIPVVAVAS 236 (241)
Q Consensus 215 ~~~~~~~~~~~l---~~id~IvFtS 236 (241)
.....+.+.+.+ ..+++|+-++
T Consensus 156 ~~~~~~~~~~~l~~~~~~~ai~~~~ 180 (263)
T cd06280 156 AEAAEAALAAWLAAPERPEALVASN 180 (263)
T ss_pred HHHHHHHHHHHhcCCCCCcEEEECC
No 135
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=74.56 E-value=59 Score=29.57 Aligned_cols=161 Identities=11% Similarity=0.082 Sum_probs=84.7
Q ss_pred hHHHHHHHHHCCCcEEEeceEEEeeCCCc-hHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeC---HH
Q 026235 62 NGKLIKALAKHRIDCLELPLIQHAQGPDT-DRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVG---AG 137 (241)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~~~~~~~-~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG---~~ 137 (241)
.+-..+.|++.|.+=..+-.+.-+..... ..+.+.+ .....|.|+-++.-+.+....... ++++++-| +.
T Consensus 48 ~~G~~~aLk~~G~~n~~i~~~na~~~~~~a~~iarql-~~~~~dviv~i~tp~Aq~~~s~~~-----~iPVV~aavtd~v 121 (322)
T COG2984 48 REGVKEALKDAGYKNVKIDYQNAQGDLGTAAQIARQL-VGDKPDVIVAIATPAAQALVSATK-----TIPVVFAAVTDPV 121 (322)
T ss_pred HHHHHHHHHhcCccCeEEEeecCCCChHHHHHHHHHh-hcCCCcEEEecCCHHHHHHHHhcC-----CCCEEEEccCchh
Confidence 34567789999986111222222111111 2233333 236779999888888887777643 34444332 22
Q ss_pred HHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEccC-C-Cc----hhHHHHHHhCCCeeeEeeeee
Q 026235 138 TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASA-K-AS----NEIEEGLSNRGFEVVRLNTYT 211 (241)
Q Consensus 138 Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~~~~~~iL~~~g~-~-~~----~~L~~~L~~~G~~V~~~~vY~ 211 (241)
.++-..+. ..-|-.+.-+.+....+.-++.|+...+.-++|-++.+. + .. ++|.+.+++.|++|.+..+=.
T Consensus 122 ~a~Lv~~~---~~pg~NvTGvsD~~~v~q~i~lik~~~Pnak~Igv~Y~p~E~ns~~l~eelk~~A~~~Gl~vve~~v~~ 198 (322)
T COG2984 122 GAKLVKSL---EQPGGNVTGVSDLLPVAQQIELIKALLPNAKSIGVLYNPGEANSVSLVEELKKEARKAGLEVVEAAVTS 198 (322)
T ss_pred hccCCccc---cCCCCceeecCCcchHHHHHHHHHHhCCCCeeEEEEeCCCCcccHHHHHHHHHHHHHCCCEEEEEecCc
Confidence 22222211 000333333344444566666666665544677344332 2 22 467778889999998886654
Q ss_pred eecCCCChHHHHHHc-CCCCEEEEE
Q 026235 212 TEPVHHVDQTVLKQA-LSIPVVAVA 235 (241)
Q Consensus 212 ~~~~~~~~~~~~~~l-~~id~IvFt 235 (241)
....+ ...+.+ ++.|+|.+-
T Consensus 199 ~ndi~----~a~~~l~g~~d~i~~p 219 (322)
T COG2984 199 VNDIP----RAVQALLGKVDVIYIP 219 (322)
T ss_pred ccccH----HHHHHhcCCCcEEEEe
Confidence 44333 223333 889988753
No 136
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=74.56 E-value=14 Score=27.59 Aligned_cols=87 Identities=21% Similarity=0.086 Sum_probs=53.7
Q ss_pred hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeC--HHHHHHHHHHHHh--cCCCCcEEEEeCHH
Q 026235 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS--PEAGSVFLEAWKE--AGTPNVRIGVVGAG 137 (241)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS--~~aV~~f~~~l~~--~~~~~~~i~aIG~~ 137 (241)
-..++..|+++|+++..+.... +.+++.+.+.+ .++|.|.|++ ........+..+. ...++.++++-|+.
T Consensus 17 l~~la~~l~~~G~~v~~~d~~~-----~~~~l~~~~~~-~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~~ 90 (121)
T PF02310_consen 17 LLYLAAYLRKAGHEVDILDANV-----PPEELVEALRA-ERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGPH 90 (121)
T ss_dssp HHHHHHHHHHTTBEEEEEESSB------HHHHHHHHHH-TTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEESS
T ss_pred HHHHHHHHHHCCCeEEEECCCC-----CHHHHHHHHhc-CCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECCc
Confidence 5678889999999888663321 12555555544 5899999976 3344444443332 23468899999976
Q ss_pred -H---HHHHHH-hhhccCCCCceeecCC
Q 026235 138 -T---ASIFEE-VIQSSKCSLDVAFSPS 160 (241)
Q Consensus 138 -T---a~~L~~-~~~~~~~Gi~~~~~p~ 160 (241)
| .+.+++ . |+...+..+
T Consensus 91 ~t~~~~~~l~~~~------~~D~vv~Ge 112 (121)
T PF02310_consen 91 ATADPEEILREYP------GIDYVVRGE 112 (121)
T ss_dssp SGHHHHHHHHHHH------TSEEEEEET
T ss_pred hhcChHHHhccCc------CcceecCCC
Confidence 2 233444 5 877655554
No 137
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=74.52 E-value=18 Score=29.44 Aligned_cols=73 Identities=16% Similarity=0.112 Sum_probs=43.6
Q ss_pred CcEE-EEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEccCCCchhHHHHHHhCCCeeeE
Q 026235 128 NVRI-GVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVR 206 (241)
Q Consensus 128 ~~~i-~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~~~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~ 206 (241)
+..+ ++-| .|++.|+++. ++.+.-+ ..|.-+++++|.+....+.++.++.....-+.+...-+-.|.++..
T Consensus 34 g~dViIsRG-~ta~~lr~~~-----~iPVV~I--~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~~~i~~ 105 (176)
T PF06506_consen 34 GADVIISRG-GTAELLRKHV-----SIPVVEI--PISGFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELLGVDIKI 105 (176)
T ss_dssp T-SEEEEEH-HHHHHHHCC------SS-EEEE-----HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT-EEEE
T ss_pred CCeEEEECC-HHHHHHHHhC-----CCCEEEE--CCCHhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHhCCceEE
Confidence 4444 5555 6999999883 6665444 5788999999987765667888887766555444443334666544
Q ss_pred ee
Q 026235 207 LN 208 (241)
Q Consensus 207 ~~ 208 (241)
..
T Consensus 106 ~~ 107 (176)
T PF06506_consen 106 YP 107 (176)
T ss_dssp EE
T ss_pred EE
Confidence 33
No 138
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=73.52 E-value=28 Score=33.20 Aligned_cols=135 Identities=10% Similarity=0.051 Sum_probs=77.6
Q ss_pred ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhc-CCCCcEEEEeCH-HH
Q 026235 61 KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA-GTPNVRIGVVGA-GT 138 (241)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~-~~~~~~i~aIG~-~T 138 (241)
...++.+.|++.|+++..... .....++ +...+...+-+..++.+.....+.+++. +.+-+.+--+|. .|
T Consensus 221 d~~eik~lL~~~Gi~v~~~~s----g~~t~~~----i~~~~~A~lniv~~~~~~~~~A~~Le~~fGiP~~~~~~~Gi~~T 292 (466)
T TIGR01282 221 DAWESRILLEEIGLRVVAQWS----GDGTLNE----MENAPKAKLNLIHCYRSMNYISRHMEEKYGIPWMEYNFFGPTKI 292 (466)
T ss_pred cHHHHHHHHHHcCCeEEEEEC----CCCCHHH----HHhcccCCEEEEEChHHHHHHHHHHHHHhCCceEeCCCCCHHHH
Confidence 457899999999999873221 1112222 3355677777777777666777777653 444222223664 46
Q ss_pred HHHHHHhhhccCCCCceeecCCCC-----CHHHHHHH----hhhCCCCccEEEEEccCCCchhHHHHHHhCCCeeeEeee
Q 026235 139 ASIFEEVIQSSKCSLDVAFSPSKA-----TGKILASE----LPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNT 209 (241)
Q Consensus 139 a~~L~~~~~~~~~Gi~~~~~p~~~-----t~e~L~~~----l~~~~~~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~~~v 209 (241)
.+.|++. ..++|.. .++.. ..+++++. ..+. ..|+|+.+.-|......+...|++.|.++...-.
T Consensus 293 ~~~Lr~i--a~~~g~~---i~~~~e~~I~~e~~~~~~~ld~~~~~-L~GKrv~i~~g~~~~~~~~~~l~ELGmevv~~g~ 366 (466)
T TIGR01282 293 AESLRKI--AEFFDDE---IKEKAEEVIAKYQPAVDAVIAKYRPR-LEGKTVMLYVGGLRPRHVIGAFEDLGMEVIGTGY 366 (466)
T ss_pred HHHHHHH--HHHHCch---hHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCEEEEECCCCcHHHHHHHHHHCCCEEEEEee
Confidence 7777765 1223531 12110 11122222 2233 3578988886655455677899999999975444
No 139
>PRK09271 flavodoxin; Provisional
Probab=73.51 E-value=45 Score=26.62 Aligned_cols=67 Identities=9% Similarity=0.046 Sum_probs=36.8
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCH--------HHHHHHHHHHHhcCCCCcEEEEe
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP--------EAGSVFLEAWKEAGTPNVRIGVV 134 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~--------~aV~~f~~~l~~~~~~~~~i~aI 134 (241)
+.+++.|++.|.++.. +.+... + +.....++.++|.|+|-|+ ..+..|++.+......+.+++++
T Consensus 19 ~~ia~~l~~~g~~v~~---~~~~~~-~---~~~~~~~~~~~d~vilgt~T~~~G~~p~~~~~f~~~l~~~~~~~k~~avf 91 (160)
T PRK09271 19 REIEERCEEAGHEVDW---VETDVQ-T---LAEYPLDPEDYDLYLLGTWTDNAGRTPPEMKRFIAELAETIGKPPNVAVF 91 (160)
T ss_pred HHHHHHHHhCCCeeEE---Eecccc-c---ccccccCcccCCEEEEECcccCCCcCCHHHHHHHHHHHHHhccCCeEEEE
Confidence 4455566677876642 222111 0 0011114467899999884 24778887776533344566666
Q ss_pred CH
Q 026235 135 GA 136 (241)
Q Consensus 135 G~ 136 (241)
|-
T Consensus 92 gs 93 (160)
T PRK09271 92 GT 93 (160)
T ss_pred ec
Confidence 64
No 140
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=73.18 E-value=32 Score=32.28 Aligned_cols=137 Identities=11% Similarity=0.068 Sum_probs=78.6
Q ss_pred ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHh-cCCCCcEEEEeCH-HH
Q 026235 61 KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE-AGTPNVRIGVVGA-GT 138 (241)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~-~~~~~~~i~aIG~-~T 138 (241)
+..++.+.|++.|+++.... ......++ +...++..+-+..++.+...+.+.+++ .+.+-+..--+|. .|
T Consensus 186 d~~el~~lL~~~Gi~v~~~~----~~~~t~ee----i~~~~~A~lniv~~~~~~~~~a~~Le~~fGiP~~~~~p~Gi~~t 257 (421)
T cd01976 186 DAWASRILLEEMGLRVVAQW----SGDGTLNE----MENAHKAKLNLIHCYRSMNYIARMMEEKYGIPWMEYNFFGPTKI 257 (421)
T ss_pred cHHHHHHHHHHcCCeEEEEe----CCCCCHHH----HHhcccCCEEEEECcHHHHHHHHHHHHHhCCcEEecccCCHHHH
Confidence 45789999999999998322 11112233 334567777777777766666777765 3443222223564 46
Q ss_pred HHHHHHhhhccCCCCceeecCCC------CCHHHHHHHhhhC--CCCccEEEEEccCCCchhHHHHHHhCCCeeeEeeee
Q 026235 139 ASIFEEVIQSSKCSLDVAFSPSK------ATGKILASELPKN--GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTY 210 (241)
Q Consensus 139 a~~L~~~~~~~~~Gi~~~~~p~~------~t~e~L~~~l~~~--~~~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~~~vY 210 (241)
.+.|++. ..++|..+ ++. ..-+.+.+.|.+. ...|+++++.-|......+...|++.|.+|...-.+
T Consensus 258 ~~~l~~i--a~~~g~~~---~~~~e~~i~~e~~~~~~~l~~~~~~L~Gkrv~i~~g~~~~~~~~~~l~elGmevv~~g~~ 332 (421)
T cd01976 258 AESLRKI--AAYFDDEI---TAKTEEVIAEYKPAMEAVIAKYRPRLEGKTVMLYVGGLRPRHYIGAYEDLGMEVVGTGYE 332 (421)
T ss_pred HHHHHHH--HHHhCchH---HHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHCCCEEEEEEee
Confidence 6666665 12235431 111 0111233334321 236789998866554556778999999999876554
No 141
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=73.16 E-value=34 Score=30.62 Aligned_cols=159 Identities=16% Similarity=0.135 Sum_probs=88.9
Q ss_pred EEEeCCCCChHHH----HHHHHHCCCcEEEeceEEEeeCCCchHHHHHHh---cCCCccEEEEeCH--HHHH--HHHHHH
Q 026235 53 VVVTRERGKNGKL----IKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN---ADTIFDWIIITSP--EAGS--VFLEAW 121 (241)
Q Consensus 53 VLitR~~~~~~~l----~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~---~l~~~d~IiFTS~--~aV~--~f~~~l 121 (241)
+++....+.+..+ .+.+++.|+++..+-+-+. ...+++.+.++ ...+.|.|+.--| ..++ ..++.+
T Consensus 37 ii~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~---~~~~~l~~~I~~lN~d~~V~GIivq~Plp~~i~~~~i~~~I 113 (286)
T PRK14175 37 VILVGNDGASQSYVRSKKKAAEKIGMISEIVHLEET---ATEEEVLNELNRLNNDDSVSGILVQVPLPKQVSEQKILEAI 113 (286)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCC---CCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcc
Confidence 4444444443333 3456777988776544222 12234444443 4468899999877 2222 222222
Q ss_pred Hh-cCCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhC--CCCccEEEEEccCC-CchhHHHHH
Q 026235 122 KE-AGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN--GKKKCTVLYPASAK-ASNEIEEGL 197 (241)
Q Consensus 122 ~~-~~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~--~~~~~~iL~~~g~~-~~~~L~~~L 197 (241)
.. ...++..-.-.|.-. . |-. .+.| -|+.+.++.|..+ ...|++++++-... ...-+...|
T Consensus 114 ~p~KDVDGl~~~n~g~l~------~------~~~-~~~P--cTp~ai~~ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL 178 (286)
T PRK14175 114 NPEKDVDGFHPINIGKLY------I------DEQ-TFVP--CTPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLL 178 (286)
T ss_pred CcccCcccCCccchHhHh------c------CCC-CCCC--CcHHHHHHHHHHcCCCCCCCEEEEECCCchhHHHHHHHH
Confidence 21 122444444444321 1 311 2444 4889999888776 35678888885544 556788899
Q ss_pred HhCCCeeeEeeeeeeecCCCChHHHHHHcCCCCEEEEECC
Q 026235 198 SNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASP 237 (241)
Q Consensus 198 ~~~G~~V~~~~vY~~~~~~~~~~~~~~~l~~id~IvFtSp 237 (241)
.++|++|.-+.-+. .++.+.+.+.|+|+-+-+
T Consensus 179 ~~~gatVtv~~s~t--------~~l~~~~~~ADIVIsAvg 210 (286)
T PRK14175 179 LQKNASVTILHSRS--------KDMASYLKDADVIVSAVG 210 (286)
T ss_pred HHCCCeEEEEeCCc--------hhHHHHHhhCCEEEECCC
Confidence 99999887665321 123333467888876554
No 142
>cd06276 PBP1_FucR_like Ligand-binding domain of a transcription repressor, FucR, which functions as a molecular sensor of L-fucose availability. Ligand-binding domain of a transcription repressor, FucR, which functions as a molecular sensor of L-fucose availability. FcuR acts as an inducer of fucRRIAK and as a corepressor of another locus that regulates production of fucosylated glycans. FcuR and its close homologs in this group are a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes t
Probab=72.84 E-value=27 Score=29.55 Aligned_cols=123 Identities=9% Similarity=0.016 Sum_probs=68.1
Q ss_pred HHHHHHHHHCC-CcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHH-HHHHHHhcCCCCcEEEEeCHHHHH
Q 026235 63 GKLIKALAKHR-IDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSV-FLEAWKEAGTPNVRIGVVGAGTAS 140 (241)
Q Consensus 63 ~~l~~~L~~~G-~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~-f~~~l~~~~~~~~~i~aIG~~Ta~ 140 (241)
..+.+.++++| +.+...+.-+ ...+.+...+ ...+|.+|+.|...-.. ....+.+ .+++++.+|.....
T Consensus 18 ~~i~~~l~~~g~~~l~~~~~~~----~~~~~~~~~~--~~~vdGvIi~~~~~~~~~~~~~~~~---~~~PvV~i~~~~~~ 88 (247)
T cd06276 18 NSFVNTLGKNAQVDLYFHHYNE----DLFKNIISNT--KGKYSGYVVMPHFKNEIQYFLLKKI---PKEKLLILDHSIPE 88 (247)
T ss_pred HHHHHHHHhcCcEEEEEEcCch----HHHHHHHHHH--hcCCCEEEEecCCCCcHHHHHHhcc---CCCCEEEEcCcCCC
Confidence 44666788889 7666543322 1112222222 37899999987642221 2222221 35789999964311
Q ss_pred HHHHhhhccCCCCceeecCCCCCHHHHHHHhhh--CCCCccEEEEEccCCC------chhHHHHHHhCCCeee
Q 026235 141 IFEEVIQSSKCSLDVAFSPSKATGKILASELPK--NGKKKCTVLYPASAKA------SNEIEEGLSNRGFEVV 205 (241)
Q Consensus 141 ~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~--~~~~~~~iL~~~g~~~------~~~L~~~L~~~G~~V~ 205 (241)
.. ++..........+..+++.+.+ . +.+++.++.+... ..-+.+.|++.|+++.
T Consensus 89 ---~~------~~~~V~~D~~~~~~~a~~~L~~~~~--G~~~Ia~i~~~~~~~~~~R~~gf~~~l~~~g~~~~ 150 (247)
T cd06276 89 ---GG------EYSSVAQDFEKAIYNALQEGLEKLK--KYKKLILVFPNKTAIPKEIKRGFERFCKDYNIETE 150 (247)
T ss_pred ---CC------CCCeEEEccHHHHHHHHHHHHHHhc--CCCEEEEEecCccHhHHHHHHHHHHHHHHcCCCcc
Confidence 12 3332222233445667777777 5 3479999977542 1235668888888754
No 143
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=72.81 E-value=37 Score=29.87 Aligned_cols=87 Identities=15% Similarity=0.172 Sum_probs=53.2
Q ss_pred CCCeEEEeCCCCC--hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHH-H----------
Q 026235 49 SNPKVVVTRERGK--NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG-S---------- 115 (241)
Q Consensus 49 ~g~~VLitR~~~~--~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV-~---------- 115 (241)
.++||+|.+...- ..++.++|++.|+++..+++..... .. ..+.+||.|+|.-..+. +
T Consensus 2 ~~~kvaVl~~pG~n~d~e~~~Al~~aG~~v~~v~~~~~~~--~~-------~~l~~~DgLvipGGfs~gD~l~~g~~~~~ 72 (261)
T PRK01175 2 ESIRVAVLRMEGTNCEDETVKAFRRLGVEPEYVHINDLAA--ER-------KSVSDYDCLVIPGGFSAGDYIRAGAIFAA 72 (261)
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHHCCCcEEEEeeccccc--cc-------cchhhCCEEEECCCCCcccccccchhhHH
Confidence 3577887776443 4567899999999998887643211 10 13467999999886211 1
Q ss_pred HHH----HHHHhcCCCCcEEEEeCHHHHHHHHHh
Q 026235 116 VFL----EAWKEAGTPNVRIGVVGAGTASIFEEV 145 (241)
Q Consensus 116 ~f~----~~l~~~~~~~~~i~aIG~~Ta~~L~~~ 145 (241)
.+. +.+.+.--.+.+++.|.-. .+.|-+.
T Consensus 73 ~l~~~l~~~Ik~f~~~gkpVLGICnG-~QlLa~~ 105 (261)
T PRK01175 73 RLKAVLRKDIEEFIDEGYPIIGICNG-FQVLVEL 105 (261)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEECHH-HHHHHHC
Confidence 111 2222221246788888866 4678777
No 144
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=72.59 E-value=38 Score=27.82 Aligned_cols=88 Identities=13% Similarity=0.127 Sum_probs=51.5
Q ss_pred CeEEEeCCCC-ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEe-CHHH---HHHHHHHHHhcC
Q 026235 51 PKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT-SPEA---GSVFLEAWKEAG 125 (241)
Q Consensus 51 ~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFT-S~~a---V~~f~~~l~~~~ 125 (241)
||||+....+ -...+.+.|++.|+++..++..+.. . ..+..+|.||++ ++.. .....+.+.+ -
T Consensus 2 ~~iliid~~dsf~~~i~~~l~~~g~~~~v~~~~~~~----~-------~~l~~~d~iIi~gGp~~~~~~~~~~~~i~~-~ 69 (190)
T PRK06895 2 TKLLIINNHDSFTFNLVDLIRKLGVPMQVVNVEDLD----L-------DEVENFSHILISPGPDVPRAYPQLFAMLER-Y 69 (190)
T ss_pred cEEEEEeCCCchHHHHHHHHHHcCCcEEEEECCccC----h-------hHhccCCEEEECCCCCChHHhhHHHHHHHH-h
Confidence 7888887754 3555999999999988877654321 1 123568999988 4442 2222333332 1
Q ss_pred CCCcEEEEeCHHHHHHHHHhhhccCCCCcee
Q 026235 126 TPNVRIGVVGAGTASIFEEVIQSSKCSLDVA 156 (241)
Q Consensus 126 ~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~ 156 (241)
..+++++.|--.- +.|...+ |-++.
T Consensus 70 ~~~~PiLGIClG~-Qlla~~~-----Gg~V~ 94 (190)
T PRK06895 70 HQHKSILGVCLGH-QTLCEFF-----GGELY 94 (190)
T ss_pred cCCCCEEEEcHHH-HHHHHHh-----CCeEe
Confidence 2356776555443 3443332 76653
No 145
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=72.48 E-value=63 Score=29.09 Aligned_cols=160 Identities=18% Similarity=0.120 Sum_probs=85.3
Q ss_pred EEEeCCCCChHHHH----HHHHHCCCcEEEeceEEEeeCCCchHHHHHH---hcCCCccEEEEeCH--HHHH--HHHHHH
Q 026235 53 VVVTRERGKNGKLI----KALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NADTIFDWIIITSP--EAGS--VFLEAW 121 (241)
Q Consensus 53 VLitR~~~~~~~l~----~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l---~~l~~~d~IiFTS~--~aV~--~f~~~l 121 (241)
++.....+....+. +.+++.|+++..+-+-+.. ..+++.+.+ ++....|.|++--| ..++ ..++.+
T Consensus 44 iI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~---s~~el~~~I~~lN~D~~V~GIlvq~PlP~~id~~~i~~~I 120 (299)
T PLN02516 44 VVIVGSRKDSQTYVNMKRKACAEVGIKSFDVDLPENI---SEAELISKVHELNANPDVHGILVQLPLPKHINEEKILNEI 120 (299)
T ss_pred EEEECCChhHHHHHHHHHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCCCCeEEEecCCCCCcCHHHHHhcc
Confidence 44445444444443 4577789887765543221 123344444 34478899998877 2222 122222
Q ss_pred HhcCCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCC--CCccEEEEE-ccCCCchhHHHHHH
Q 026235 122 KEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEEGLS 198 (241)
Q Consensus 122 ~~~~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~--~~~~~iL~~-~g~~~~~~L~~~L~ 198 (241)
. +.+-+=++.+.-...|-.- |-...+.| -|+.+.++.|..+. ..|++++++ ||.....-|...|.
T Consensus 121 ~----p~KDVDGl~~~n~g~l~~~------~~~~~~~P--cTp~avi~lL~~~~i~l~Gk~vvVIGRS~iVGkPla~lL~ 188 (299)
T PLN02516 121 S----LEKDVDGFHPLNIGKLAMK------GREPLFLP--CTPKGCLELLSRSGIPIKGKKAVVVGRSNIVGLPVSLLLL 188 (299)
T ss_pred C----cccccCccCHhhHhhHhcC------CCCCCCCC--CCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHH
Confidence 1 1222223333333333211 11112444 58889998887653 457776555 55555566889999
Q ss_pred hCCCeeeEeeeeeeecCCCChHHHHHHcCCCCEEEEE
Q 026235 199 NRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVA 235 (241)
Q Consensus 199 ~~G~~V~~~~vY~~~~~~~~~~~~~~~l~~id~IvFt 235 (241)
++|++|..|.-... .+.+...+.|+|+-.
T Consensus 189 ~~~ATVtvchs~T~--------nl~~~~~~ADIvv~A 217 (299)
T PLN02516 189 KADATVTVVHSRTP--------DPESIVREADIVIAA 217 (299)
T ss_pred HCCCEEEEeCCCCC--------CHHHHHhhCCEEEEc
Confidence 99999987754321 122223566777654
No 146
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=72.29 E-value=16 Score=33.08 Aligned_cols=64 Identities=14% Similarity=0.174 Sum_probs=36.3
Q ss_pred HHHHHHHHCCCcEEE-eceEEEeeCCCch----HHHHHHhcCCCccEEEEeC--HHHHHHHHHHHHhcCCCCcEEEEeCH
Q 026235 64 KLIKALAKHRIDCLE-LPLIQHAQGPDTD----RLSSVLNADTIFDWIIITS--PEAGSVFLEAWKEAGTPNVRIGVVGA 136 (241)
Q Consensus 64 ~l~~~L~~~G~~v~~-~P~~~~~~~~~~~----~l~~~l~~l~~~d~IiFTS--~~aV~~f~~~l~~~~~~~~~i~aIG~ 136 (241)
-+.+..+++|+++.. .|. . .+.+ .++..+ -..+|.|+++. ++++...++.+.+ .+++++++..
T Consensus 44 Gi~~aa~~~G~~v~~~~~~---~--~d~~~q~~~i~~li--~~~vdgIiv~~~d~~al~~~l~~a~~---~gIpVV~~d~ 113 (336)
T PRK15408 44 GAKEAGKELGVDVTYDGPT---E--PSVSGQVQLINNFV--NQGYNAIIVSAVSPDGLCPALKRAMQ---RGVKVLTWDS 113 (336)
T ss_pred HHHHHHHHhCCEEEEECCC---C--CCHHHHHHHHHHHH--HcCCCEEEEecCCHHHHHHHHHHHHH---CCCeEEEeCC
Confidence 455667788988864 221 1 1211 233333 26899999974 3444444444443 4688888875
Q ss_pred H
Q 026235 137 G 137 (241)
Q Consensus 137 ~ 137 (241)
.
T Consensus 114 ~ 114 (336)
T PRK15408 114 D 114 (336)
T ss_pred C
Confidence 4
No 147
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=72.01 E-value=74 Score=28.49 Aligned_cols=158 Identities=15% Similarity=0.143 Sum_probs=86.7
Q ss_pred CeEEEeCCCCChHHH----HHHHHHCCCcEEEeceEEEeeCCCchHHHHHH---hcCCCccEEEEeCH--HHHH--HHHH
Q 026235 51 PKVVVTRERGKNGKL----IKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NADTIFDWIIITSP--EAGS--VFLE 119 (241)
Q Consensus 51 ~~VLitR~~~~~~~l----~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l---~~l~~~d~IiFTS~--~aV~--~f~~ 119 (241)
.-+++....+.+..+ .+.+++.|+++..+-+-+.. ..+++.+.+ +...+.|.|+.--| ..++ ..++
T Consensus 41 Laii~vg~d~aS~~Yv~~k~k~~~~~Gi~~~~~~l~~~~---~~~el~~~I~~LN~D~~V~GIlvqlPLP~~i~~~~i~~ 117 (287)
T PRK14176 41 LATILVGDDPASKMYVRLKHKACERVGIRAEDQFLPADT---TQEELLELIDSLNKRKDVHGILLQLPLPKHLDPQEAME 117 (287)
T ss_pred EEEEEECCCcchHHHHHHHHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHh
Confidence 335556655554444 44677789887765443221 223444444 34478899999877 2221 1222
Q ss_pred HHHh-cCCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCC--CCccEEEEEc-cCCCchhHHH
Q 026235 120 AWKE-AGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYPA-SAKASNEIEE 195 (241)
Q Consensus 120 ~l~~-~~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~--~~~~~iL~~~-g~~~~~~L~~ 195 (241)
.+.. ...++..-+-.|. |. . |-. .+.| -|+.+.++.|..+. ..|++++++- |.....-|..
T Consensus 118 ~I~p~KDVDGl~~~N~g~-----l~-~------g~~-~~~P--cTp~av~~ll~~~~i~l~Gk~vvViGrs~iVGkPla~ 182 (287)
T PRK14176 118 AIDPAKDADGFHPYNMGK-----LM-I------GDE-GLVP--CTPHGVIRALEEYGVDIEGKNAVIVGHSNVVGKPMAA 182 (287)
T ss_pred ccCccccccccChhhhhh-----Hh-c------CCC-CCCC--CcHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHH
Confidence 2211 1123444333432 21 2 322 2444 58999998887653 3578877663 4435566889
Q ss_pred HHHhCCCeeeEeeeeeeecCCCChHHHHHHcCCCCEEEE
Q 026235 196 GLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAV 234 (241)
Q Consensus 196 ~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~l~~id~IvF 234 (241)
.|.++|++|.-+..... ++.+...+.|+|+-
T Consensus 183 lL~~~~atVtv~hs~T~--------~l~~~~~~ADIvv~ 213 (287)
T PRK14176 183 MLLNRNATVSVCHVFTD--------DLKKYTLDADILVV 213 (287)
T ss_pred HHHHCCCEEEEEeccCC--------CHHHHHhhCCEEEE
Confidence 99999999977664321 12222356777664
No 148
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=70.79 E-value=92 Score=29.10 Aligned_cols=143 Identities=14% Similarity=0.094 Sum_probs=80.5
Q ss_pred ChHHHHHHHHHCCCcEEEeceEEE------------eeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHh-cCCC
Q 026235 61 KNGKLIKALAKHRIDCLELPLIQH------------AQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE-AGTP 127 (241)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~P~~~~------------~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~-~~~~ 127 (241)
...++.+.|++.|+++..+|.+.. .+... ..+++ +..+++...-+..++..-..+.+.+++ .+.+
T Consensus 170 d~~el~~lL~~~Gl~v~~~~~~s~~~d~~~~~~~~~~~~gg-~~~e~-i~~~~~A~lniv~~~~~~~~~a~~L~e~~GiP 247 (428)
T cd01965 170 DVREIKRILEAFGLEPIILPDLSDSLDGHLTDGYSPLTKGG-TTLEE-IRDAGNAKATIALGEYSGRKAAKALEEKFGVP 247 (428)
T ss_pred CHHHHHHHHHHcCCCEEEecCcccccCCCCCCCccccCCCC-CcHHH-HHHhccCcEEEEEChhhhHHHHHHHHHHHCCC
Confidence 368999999999999999876521 01011 12222 335677788888888444455666654 4444
Q ss_pred CcEEE-EeC-HHHHHHHHHhhhccCCCCceeecCCCC--CHHHHHHHhhhC--CCCccEEEEEccCCCchhHHHHHHhCC
Q 026235 128 NVRIG-VVG-AGTASIFEEVIQSSKCSLDVAFSPSKA--TGKILASELPKN--GKKKCTVLYPASAKASNEIEEGLSNRG 201 (241)
Q Consensus 128 ~~~i~-aIG-~~Ta~~L~~~~~~~~~Gi~~~~~p~~~--t~e~L~~~l~~~--~~~~~~iL~~~g~~~~~~L~~~L~~~G 201 (241)
-+..- -+| ..|.+.|++.. ..+|... |+.. .-+.+++.+.+. ...|+++.+..+....-.|.+.|.+.|
T Consensus 248 ~~~~~~p~G~~~t~~~l~~l~--~~~g~~~---~~~~~~~r~~~~~~~~~~~~~l~gk~v~i~~~~~~~~~l~~~L~e~G 322 (428)
T cd01965 248 YILFPTPIGLKATDEFLRALS--KLSGKPI---PEELERERGRLLDAMLDSHFYLGGKRVAIAGDPDLLLGLSRFLLEMG 322 (428)
T ss_pred eeecCCCcChHHHHHHHHHHH--HHHCCCC---CHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcChHHHHHHHHHHHHcC
Confidence 33222 466 34566666541 1125432 2110 011233332221 235789988854433345899999999
Q ss_pred CeeeEeeee
Q 026235 202 FEVVRLNTY 210 (241)
Q Consensus 202 ~~V~~~~vY 210 (241)
.++..+.+.
T Consensus 323 ~~v~~v~~~ 331 (428)
T cd01965 323 AEPVAAVTG 331 (428)
T ss_pred CcceEEEEc
Confidence 999776663
No 149
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=70.74 E-value=12 Score=33.95 Aligned_cols=77 Identities=12% Similarity=0.069 Sum_probs=52.3
Q ss_pred cccCCCCCCCeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHH
Q 026235 42 TSASASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFL 118 (241)
Q Consensus 42 ~~~~~~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~ 118 (241)
+....+++|++|+...+-...+.+.+.|++.|+++...-.+.=...-...++..........++|+-|-+-+|+.--
T Consensus 219 ~~~~~~l~~~~v~a~sGIg~P~~F~~~L~~~G~~~~~~~~f~DHh~yt~~dl~~l~~~a~~~~~iltTeKDaVKl~~ 295 (326)
T PF02606_consen 219 TGSIEPLKGKPVLAFSGIGNPERFFDTLESLGIEVVGTLAFPDHHRYTEQDLEKLEAEAKAAGIILTTEKDAVKLPD 295 (326)
T ss_pred ccchhhccCCeeEEEEEcCChHHHHHHHHHcCCeEEEeeECCCCCCCCHHHHHHHHHhhcccceEEecHHHHhhChh
Confidence 34445689999999999888999999999999988843333222112234454444333333489999999999653
No 150
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=70.69 E-value=43 Score=25.35 Aligned_cols=68 Identities=13% Similarity=0.207 Sum_probs=50.0
Q ss_pred hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCH----HHHHHHHHHHHhcCCCCcEEEEeCHH
Q 026235 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP----EAGSVFLEAWKEAGTPNVRIGVVGAG 137 (241)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~----~aV~~f~~~l~~~~~~~~~i~aIG~~ 137 (241)
...+.+.|++.|.++... .+.++....++...++.+|+++-- .....+++.+...+ .+++++.++..
T Consensus 6 ~~~l~~~L~~~~~~vv~~--------~~~dd~~~~i~~~~~i~avvi~~d~~~~~~~~~ll~~i~~~~-~~iPVFl~~~~ 76 (115)
T PF03709_consen 6 SRELAEALEQRGREVVDA--------DSTDDALAIIESFTDIAAVVISWDGEEEDEAQELLDKIRERN-FGIPVFLLAER 76 (115)
T ss_dssp HHHHHHHHHHTTTEEEEE--------SSHHHHHHHHHCTTTEEEEEEECHHHHHHHHHHHHHHHHHHS-TT-EEEEEESC
T ss_pred HHHHHHHHHHCCCEEEEe--------CChHHHHHHHHhCCCeeEEEEEcccccchhHHHHHHHHHHhC-CCCCEEEEecC
Confidence 457888999899888754 345566677778899999999987 66666666666544 57899999884
Q ss_pred H
Q 026235 138 T 138 (241)
Q Consensus 138 T 138 (241)
+
T Consensus 77 ~ 77 (115)
T PF03709_consen 77 D 77 (115)
T ss_dssp C
T ss_pred C
Confidence 3
No 151
>PRK05569 flavodoxin; Provisional
Probab=70.45 E-value=8.7 Score=29.77 Aligned_cols=36 Identities=22% Similarity=0.225 Sum_probs=26.5
Q ss_pred CCCccEEEEeCHH---------HHHHHHHHHHhcCCCCcEEEEeC
Q 026235 100 DTIFDWIIITSPE---------AGSVFLEAWKEAGTPNVRIGVVG 135 (241)
Q Consensus 100 l~~~d~IiFTS~~---------aV~~f~~~l~~~~~~~~~i~aIG 135 (241)
+.++|.|+|-||. .+..|++.+......+.+++.+|
T Consensus 46 ~~~~d~iilgsPty~~~~~~~~~~~~~~~~l~~~~~~~K~v~~f~ 90 (141)
T PRK05569 46 VLEADAVAFGSPSMDNNNIEQEEMAPFLDQFKLTPNENKKCILFG 90 (141)
T ss_pred HhhCCEEEEECCCcCCCcCChHHHHHHHHHhhccCcCCCEEEEEe
Confidence 4689999999984 26677776655445678888887
No 152
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=70.21 E-value=27 Score=29.52 Aligned_cols=87 Identities=16% Similarity=0.143 Sum_probs=49.5
Q ss_pred CeEEEeCCCCC-------hHHHHHHHHHC-CCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHH
Q 026235 51 PKVVVTRERGK-------NGKLIKALAKH-RIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWK 122 (241)
Q Consensus 51 ~~VLitR~~~~-------~~~l~~~L~~~-G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~ 122 (241)
++|++..+... .+-+.+.++++ |.++................+.+.+....++|+|+..+-.....+.+.+.
T Consensus 123 ~~i~~l~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~al~ 202 (275)
T cd06320 123 GKVAIIEGKAGAFAAEQRTEGFTEAIKKASGIEVVASQPADWDREKAYDVATTILQRNPDLKAIYCNNDTMALGVVEAVK 202 (275)
T ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHhhCCCcEEEEecCCCccHHHHHHHHHHHHHhCCCccEEEECCchhHHHHHHHHH
Confidence 46776543211 24466678888 77665321111111001234455554445688888888888888888887
Q ss_pred hcCCC-CcEEEEeCHH
Q 026235 123 EAGTP-NVRIGVVGAG 137 (241)
Q Consensus 123 ~~~~~-~~~i~aIG~~ 137 (241)
+.+++ ++.+++.+..
T Consensus 203 ~~g~~~di~vig~d~~ 218 (275)
T cd06320 203 NAGKQGKVLVVGTDGI 218 (275)
T ss_pred hcCCCCCeEEEecCCC
Confidence 77764 5666666543
No 153
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=69.83 E-value=83 Score=28.19 Aligned_cols=63 Identities=10% Similarity=0.018 Sum_probs=36.6
Q ss_pred CccEEEEEccCCCchhHHHHHHhCCCeeeEeeeeeeecCCCC-hHHHHHHcCCCCEEEEECCcc
Q 026235 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHV-DQTVLKQALSIPVVAVASPSA 239 (241)
Q Consensus 177 ~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~-~~~~~~~l~~id~IvFtSps~ 239 (241)
.|+++.++.-......+.+.|+.-|.+|..+.-|........ ...+.+.+...|+|++.-|.+
T Consensus 144 ~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~~~~~~~~~l~ell~~sDvv~lh~Plt 207 (311)
T PRK08410 144 KGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNKNEEYERVSLEELLKTSDIISIHAPLN 207 (311)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCccccccCceeecHHHHhhcCCEEEEeCCCC
Confidence 467777775555556788889888876544333211100100 112333357899999988754
No 154
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=69.58 E-value=26 Score=28.65 Aligned_cols=69 Identities=16% Similarity=0.138 Sum_probs=45.7
Q ss_pred CCHHHHHHHhhhCC--CCccEEEEEccCC-CchhHHHHHHhCCCeeeEeeeeeeecCCCChHHHHHHcCCCCEEEEECCc
Q 026235 162 ATGKILASELPKNG--KKKCTVLYPASAK-ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPS 238 (241)
Q Consensus 162 ~t~e~L~~~l~~~~--~~~~~iL~~~g~~-~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~l~~id~IvFtSps 238 (241)
.++...++.+.+.. ..+++++++-..+ ....+...|.++|++|. +..+. ..++.+.+.+.|+|+-+.++
T Consensus 26 ~~~~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~---v~~r~-----~~~l~~~l~~aDiVIsat~~ 97 (168)
T cd01080 26 CTPAGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVT---VCHSK-----TKNLKEHTKQADIVIVAVGK 97 (168)
T ss_pred ChHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEE---EEECC-----chhHHHHHhhCCEEEEcCCC
Confidence 36677777666553 4678999996654 35558999999998643 33322 12344456789998887765
No 155
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=69.50 E-value=60 Score=29.03 Aligned_cols=159 Identities=15% Similarity=0.129 Sum_probs=88.7
Q ss_pred EEEeCCCCChHH----HHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHh---cCCCccEEEEeCH--HHHH--HHHHHH
Q 026235 53 VVVTRERGKNGK----LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN---ADTIFDWIIITSP--EAGS--VFLEAW 121 (241)
Q Consensus 53 VLitR~~~~~~~----l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~---~l~~~d~IiFTS~--~aV~--~f~~~l 121 (241)
++.....+.+.. -.+.+++.|+++..+-+-+.. ..+++.+.++ ...+.|.|+.--| ..++ .+++.+
T Consensus 37 ii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~---~~~~l~~~I~~lN~d~~V~GIlvq~Plp~~i~~~~i~~~I 113 (285)
T PRK14189 37 VILVGDNPASQVYVRNKVKACEDNGFHSLKDRYPADL---SEAELLARIDELNRDPKIHGILVQLPLPKHIDSHKVIEAI 113 (285)
T ss_pred EEEeCCCchHHHHHHHHHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhhc
Confidence 555555444433 344677889888765543221 2344444554 3467889998877 2222 123322
Q ss_pred Hh-cCCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCC--CCccEEEEE-ccCCCchhHHHHH
Q 026235 122 KE-AGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEEGL 197 (241)
Q Consensus 122 ~~-~~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~--~~~~~iL~~-~g~~~~~~L~~~L 197 (241)
.. ...++..-.-.|.-. . |-. .+.| -|+.+.++.|..+. ..|++++++ +|.....-|...|
T Consensus 114 ~p~KDVDGl~~~n~g~l~------~------~~~-~~~P--cTp~aii~lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL 178 (285)
T PRK14189 114 APEKDVDGFHVANAGALM------T------GQP-LFRP--CTPYGVMKMLESIGIPLRGAHAVVIGRSNIVGKPMAMLL 178 (285)
T ss_pred CcccCcccCChhhhhHhh------C------CCC-CCcC--CCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHH
Confidence 21 122444444444321 1 322 2444 48899998887663 457777666 4444456689999
Q ss_pred HhCCCeeeEeeeeeeecCCCChHHHHHHcCCCCEEEEECC
Q 026235 198 SNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASP 237 (241)
Q Consensus 198 ~~~G~~V~~~~vY~~~~~~~~~~~~~~~l~~id~IvFtSp 237 (241)
.++|++|.-+.-. | .++.+.+.+.|+|+-..+
T Consensus 179 ~~~~atVt~~hs~-t-------~~l~~~~~~ADIVV~avG 210 (285)
T PRK14189 179 LQAGATVTICHSK-T-------RDLAAHTRQADIVVAAVG 210 (285)
T ss_pred HHCCCEEEEecCC-C-------CCHHHHhhhCCEEEEcCC
Confidence 9999999765322 1 122333467888876655
No 156
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=69.09 E-value=30 Score=27.75 Aligned_cols=72 Identities=14% Similarity=0.056 Sum_probs=49.0
Q ss_pred HHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEccCCCc-----hhHHHHHHhCCCeeeEeeeee
Q 026235 137 GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKAS-----NEIEEGLSNRGFEVVRLNTYT 211 (241)
Q Consensus 137 ~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~~~~~~iL~~~g~~~~-----~~L~~~L~~~G~~V~~~~vY~ 211 (241)
-.+++|+.. |++++..+-..+.++.+.+..+. +-.++.+|+-.+. +.+.+.|+++|.+-..+.+==
T Consensus 31 via~~l~d~------GfeVi~~g~~~tp~e~v~aA~~~---dv~vIgvSsl~g~h~~l~~~lve~lre~G~~~i~v~~GG 101 (143)
T COG2185 31 VIARALADA------GFEVINLGLFQTPEEAVRAAVEE---DVDVIGVSSLDGGHLTLVPGLVEALREAGVEDILVVVGG 101 (143)
T ss_pred HHHHHHHhC------CceEEecCCcCCHHHHHHHHHhc---CCCEEEEEeccchHHHHHHHHHHHHHHhCCcceEEeecC
Confidence 467788888 99998888878888887776543 2456666664333 578889999998765544444
Q ss_pred eecCCC
Q 026235 212 TEPVHH 217 (241)
Q Consensus 212 ~~~~~~ 217 (241)
.+++++
T Consensus 102 vip~~d 107 (143)
T COG2185 102 VIPPGD 107 (143)
T ss_pred ccCchh
Confidence 444443
No 157
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=68.96 E-value=39 Score=24.07 Aligned_cols=93 Identities=17% Similarity=0.169 Sum_probs=56.0
Q ss_pred ChHHHHHHHHHCCC-cEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEe----CHHHHHHHHHHHHhcCCCCcEEEEeC
Q 026235 61 KNGKLIKALAKHRI-DCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAWKEAGTPNVRIGVVG 135 (241)
Q Consensus 61 ~~~~l~~~L~~~G~-~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFT----S~~aV~~f~~~l~~~~~~~~~i~aIG 135 (241)
....+.+.|+..|+ ++.. ..+..+....+.. ..+|.++.- -.++.+ +++.+...+ +++++++++
T Consensus 10 ~~~~l~~~l~~~~~~~v~~--------~~~~~~~~~~~~~-~~~d~iiid~~~~~~~~~~-~~~~i~~~~-~~~~ii~~t 78 (112)
T PF00072_consen 10 IRELLEKLLERAGYEEVTT--------ASSGEEALELLKK-HPPDLIIIDLELPDGDGLE-LLEQIRQIN-PSIPIIVVT 78 (112)
T ss_dssp HHHHHHHHHHHTTEEEEEE--------ESSHHHHHHHHHH-STESEEEEESSSSSSBHHH-HHHHHHHHT-TTSEEEEEE
T ss_pred HHHHHHHHHHhCCCCEEEE--------ECCHHHHHHHhcc-cCceEEEEEeeeccccccc-ccccccccc-ccccEEEec
Confidence 45667778887786 4442 2344555555533 568988854 234443 344455444 678888777
Q ss_pred HHHH----HHHHHhhhccCCCCceeecCCCCCHHHHHHHh
Q 026235 136 AGTA----SIFEEVIQSSKCSLDVAFSPSKATGKILASEL 171 (241)
Q Consensus 136 ~~Ta----~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l 171 (241)
.... ..+.+. |+. ++..+..+.+.|.+.+
T Consensus 79 ~~~~~~~~~~~~~~------g~~-~~l~kp~~~~~l~~~i 111 (112)
T PF00072_consen 79 DEDDSDEVQEALRA------GAD-DYLSKPFSPEELRAAI 111 (112)
T ss_dssp SSTSHHHHHHHHHT------TES-EEEESSSSHHHHHHHH
T ss_pred CCCCHHHHHHHHHC------CCC-EEEECCCCHHHHHHhh
Confidence 4322 333344 766 4677788999988776
No 158
>PRK06934 flavodoxin; Provisional
Probab=68.90 E-value=2.4 Score=36.42 Aligned_cols=71 Identities=10% Similarity=0.083 Sum_probs=41.0
Q ss_pred ChHHHHHHHHH-CCCcEEEeceEEEeeCC---------------CchHHHHHHhcCCCccEEEEeCHH-------HHHHH
Q 026235 61 KNGKLIKALAK-HRIDCLELPLIQHAQGP---------------DTDRLSSVLNADTIFDWIIITSPE-------AGSVF 117 (241)
Q Consensus 61 ~~~~l~~~L~~-~G~~v~~~P~~~~~~~~---------------~~~~l~~~l~~l~~~d~IiFTS~~-------aV~~f 117 (241)
..+.+++.+++ .|+++.++-..+.-+.. ..+++...+.++.+||.|++-.|. .|+.|
T Consensus 72 nTk~vAe~Ia~~~gaDl~eI~~~~~Y~~~yd~~~~~a~~E~~~~~~P~L~~~~~dl~~YD~I~IG~PIWwg~~P~~V~tF 151 (221)
T PRK06934 72 STQYVAQIIQEETGGDLFRIETVKPYPRQHDPLLKYAEQEVKEGGRPEMREKIQNLADYDQIFIGYPIWWYKMPMVMYSF 151 (221)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEccccCCCCchhhhHHHHhhhcCCCHHHHHHHHhHHhCCEEEEEcchhhccccHHHHHH
Confidence 45667777754 48877776544322110 023344445577899999988864 56666
Q ss_pred HHHHHhcCCCCcEEEEe
Q 026235 118 LEAWKEAGTPNVRIGVV 134 (241)
Q Consensus 118 ~~~l~~~~~~~~~i~aI 134 (241)
++. ..+.+.+|+.+
T Consensus 152 Le~---~d~~GK~I~pF 165 (221)
T PRK06934 152 FEQ---HDFSGKTLIPF 165 (221)
T ss_pred HHh---cCCCCCEEEEE
Confidence 553 33445554443
No 159
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=68.74 E-value=38 Score=32.05 Aligned_cols=140 Identities=13% Similarity=0.066 Sum_probs=75.0
Q ss_pred ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHh-cCCCCcEEEEeC-HHH
Q 026235 61 KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE-AGTPNVRIGVVG-AGT 138 (241)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~-~~~~~~~i~aIG-~~T 138 (241)
...++.+.|++.|+++...- ......+++ ...+....-+..++..-..+.+.+++ .+.+-+...-+| ..|
T Consensus 211 d~~el~~lL~~~Gl~v~~~~----~~~~s~eei----~~~~~A~lniv~~~~~~~~~a~~L~e~~GiP~~~~~~~G~~~T 282 (456)
T TIGR01283 211 EFWHVKPLLEKLGIRVLATI----TGDSRYAEV----QTAHRAKLNMVQCSKSMINLARKMEEKYGIPYFEGSFYGIEDT 282 (456)
T ss_pred cHHHHHHHHHHcCCeEEEEe----CCCCcHHHH----HhcccCcEEEEECHhHHHHHHHHHHHHcCCCEEecCCCcHHHH
Confidence 45689999999999998621 111122333 34566677666666555666777754 354422222266 357
Q ss_pred HHHHHHhhhccCCCCce--eecCC--CCCHHHHHHHhhhC--CCCccEEEEEccCCCchhHHHHHHhCCCeeeEeeee
Q 026235 139 ASIFEEVIQSSKCSLDV--AFSPS--KATGKILASELPKN--GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTY 210 (241)
Q Consensus 139 a~~L~~~~~~~~~Gi~~--~~~p~--~~t~e~L~~~l~~~--~~~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~~~vY 210 (241)
.+.|++.. ..+|..- ...++ ...-+.+.+.|... ...|+++.+..+....-.+...|.+.|.+|..+.++
T Consensus 283 ~~~L~~Ia--~~lg~~~~~~~~~~~i~~e~~~~~~~l~~~~~~L~Gkrv~i~~g~~~~~~l~~~l~elGmevv~~~t~ 358 (456)
T TIGR01283 283 SKALRDIA--DLFGDEELLKRTEELIAREEAKIRPALEPYRERLKGKKAAIYTGGVKSWSLVSALQDLGMEVVATGTQ 358 (456)
T ss_pred HHHHHHHH--HHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHHHHCCCEEEEEeee
Confidence 77777651 1124210 00000 00011123333222 135788877655433345888999999998766443
No 160
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=68.70 E-value=56 Score=28.77 Aligned_cols=124 Identities=13% Similarity=0.029 Sum_probs=67.7
Q ss_pred CCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecC-CCCCHHHHHHHhhhCCCCcc
Q 026235 101 TIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSP-SKATGKILASELPKNGKKKC 179 (241)
Q Consensus 101 ~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p-~~~t~e~L~~~l~~~~~~~~ 179 (241)
.+.+.|+-..........+.+.+. +++++..+... ..+... . ++- .+.+ .......+++.+.+.. .+
T Consensus 66 ~~V~~iig~~~s~~~~~~~~~~~~---~ip~v~~~~~~-~~~~~~----~-~~~-~~~~~~~~~~~~~~~~l~~~g--~~ 133 (341)
T cd06341 66 DKVVAVVGGSSGAGGSALPYLAGA---GIPVIGGAGTS-AWELTS----P-NSF-PFSGGTPASLTTWGDFAKDQG--GT 133 (341)
T ss_pred cCceEEEecccccchhHHHHHhhc---CCceecCCCCC-chhhcC----C-CeE-EecCCCcchhHHHHHHHHHcC--Cc
Confidence 478888876555444333444432 45555554321 222211 0 111 1222 2345677888887654 35
Q ss_pred EEEEEccCCC------chhHHHHHHhCCCeeeEeeeeeeecCCCChHHHHHHc--CCCCEEEEECCc
Q 026235 180 TVLYPASAKA------SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPS 238 (241)
Q Consensus 180 ~iL~~~g~~~------~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~l--~~id~IvFtSps 238 (241)
++.++..+.. ...+.+.+++.|.++.....|... ..+... ....+ .++|+|++.+..
T Consensus 134 ~~~~i~~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~-~~d~~~-~~~~i~~~~pdaV~~~~~~ 198 (341)
T cd06341 134 RAVALVTALSAAVSAAAALLARSLAAAGVSVAGIVVITAT-APDPTP-QAQQAAAAGADAIITVLDA 198 (341)
T ss_pred EEEEEEeCCcHHHHHHHHHHHHHHHHcCCccccccccCCC-CCCHHH-HHHHHHhcCCCEEEEecCh
Confidence 6665544332 235788999999998777676543 222223 33333 579999988753
No 161
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=68.60 E-value=43 Score=31.01 Aligned_cols=66 Identities=14% Similarity=-0.040 Sum_probs=42.6
Q ss_pred CCHHHHHHHhhhCC--CCccEEEEE-ccCCCchhHHHHHHhCCCeeeEeeeeeeecCCCChHHHHHHcCCCCEEEEE
Q 026235 162 ATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVA 235 (241)
Q Consensus 162 ~t~e~L~~~l~~~~--~~~~~iL~~-~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~l~~id~IvFt 235 (241)
-|+.+.++.|..+. ..|++++++ ||+....-|...|.++|++|.-|.-.. . .+.+...+.|+|+-.
T Consensus 213 CTp~avielL~~y~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T----~----nl~~~~r~ADIVIsA 281 (364)
T PLN02616 213 CTPKGCIELLHRYNVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT----K----NPEEITREADIIISA 281 (364)
T ss_pred CCHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCCC----C----CHHHHHhhCCEEEEc
Confidence 58899998887653 457776555 555555668889999999987664321 1 122223567777654
No 162
>PRK12742 oxidoreductase; Provisional
Probab=68.17 E-value=39 Score=27.93 Aligned_cols=32 Identities=9% Similarity=0.107 Sum_probs=25.3
Q ss_pred CCCCCeEEEeCCCC-ChHHHHHHHHHCCCcEEE
Q 026235 47 SNSNPKVVVTRERG-KNGKLIKALAKHRIDCLE 78 (241)
Q Consensus 47 ~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~ 78 (241)
++.|++||||.... -...+++.|.++|+++..
T Consensus 3 ~~~~k~vlItGasggIG~~~a~~l~~~G~~v~~ 35 (237)
T PRK12742 3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGANVRF 35 (237)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEE
Confidence 46789999998754 467788899999988764
No 163
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=68.13 E-value=79 Score=29.62 Aligned_cols=147 Identities=18% Similarity=0.142 Sum_probs=77.3
Q ss_pred CCeEEEeCCC--CChHHHHHHHHHCCCcEE-EeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCC
Q 026235 50 NPKVVVTRER--GKNGKLIKALAKHRIDCL-ELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT 126 (241)
Q Consensus 50 g~~VLitR~~--~~~~~l~~~L~~~G~~v~-~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~ 126 (241)
..+|.+...- ....++.+.|++.|+++. .+|- ....++ ...+.-..++..++.+- ...+.+++.+.
T Consensus 166 ~~~VniiG~~~~~d~~el~~lL~~~Gi~v~~~lp~------~~~~d~----~~~~~~~~~~~~~~~~~-~~A~~L~~~Gi 234 (427)
T PRK02842 166 HPSLVLVGSLADVVEDQLTLEFKKLGIGVVGFLPA------RRFTEL----PAIGPGTVVALAQPFLS-DTARALRERGA 234 (427)
T ss_pred CCcEEEEEeCCcchHHHHHHHHHHcCCeeEEEeCC------ccHHHH----hhcCcCcEEEEeCHHHH-HHHHHHHHcCC
Confidence 3455554432 234789999999999986 4442 112222 12333445566777665 35666655554
Q ss_pred CCcEE-EEeC-HHHHHHHHHhhhccCCCCceeecCC--CCCHHHHHHHhhhC--CCCccEEEEEccCCCchhHHHHHHh-
Q 026235 127 PNVRI-GVVG-AGTASIFEEVIQSSKCSLDVAFSPS--KATGKILASELPKN--GKKKCTVLYPASAKASNEIEEGLSN- 199 (241)
Q Consensus 127 ~~~~i-~aIG-~~Ta~~L~~~~~~~~~Gi~~~~~p~--~~t~e~L~~~l~~~--~~~~~~iL~~~g~~~~~~L~~~L~~- 199 (241)
+-... +-+| ..|.+.|++. ..++|......-+ ...-..+.+++... ...|+++.+..+..-.-.+...|.+
T Consensus 235 P~~~~~~P~G~~~T~~~L~~l--a~~~g~~~~~~~~~~~~er~~~~~~l~~~~~~l~Gkrvai~g~~~~~~~la~~L~ee 312 (427)
T PRK02842 235 KVLTAPFPLGPEGTRAWLEAA--AAAFGIDPDGLEEREAPAWERARKALEPYRELLRGKRVFFLPDSQLEIPLARFLSRE 312 (427)
T ss_pred ccccCCCCcChHHHHHHHHHH--HHHhCcCHhHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEECCchhHHHHHHHHHHh
Confidence 43222 2266 3566666665 1223543210000 00112233334332 2357898877443333458899988
Q ss_pred CCCeeeEeee
Q 026235 200 RGFEVVRLNT 209 (241)
Q Consensus 200 ~G~~V~~~~v 209 (241)
.|.++..+..
T Consensus 313 lGm~~v~v~t 322 (427)
T PRK02842 313 CGMELVEVGT 322 (427)
T ss_pred CCCEEEEeCC
Confidence 9999876654
No 164
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=68.03 E-value=48 Score=27.61 Aligned_cols=89 Identities=8% Similarity=0.036 Sum_probs=50.8
Q ss_pred CCeEEEeCCCCC-------hHHHHHHHHHCCCcEEEeceEEEeeCCC--chHHHHHHhcCCCccEEEEeCHHHHHHHHHH
Q 026235 50 NPKVVVTRERGK-------NGKLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLNADTIFDWIIITSPEAGSVFLEA 120 (241)
Q Consensus 50 g~~VLitR~~~~-------~~~l~~~L~~~G~~v~~~P~~~~~~~~~--~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~ 120 (241)
.++|++..+... ..-+.+.++++|.+......+......+ ...+...+..-+.+|+|+.++......+...
T Consensus 117 ~~~i~~l~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~a~~~~~a 196 (268)
T cd06289 117 HRRIAFIGGLEDSSTRRERLAGYRAALAEAGLPFDSELVVEGPPSRQGGAEAVAQLLDLPPRPTAIVCFNDLVAFGAMSG 196 (268)
T ss_pred CCCEEEecCCccccchHHHHHHHHHHHHHcCCCCCchhEEecCcchhhHHHHHHHHHcCCCCCCEEEEcCcHHHHHHHHH
Confidence 345666544321 2345567777775432211111111111 1334555543357899999998888888888
Q ss_pred HHhcCCC---CcEEEEeCHHH
Q 026235 121 WKEAGTP---NVRIGVVGAGT 138 (241)
Q Consensus 121 l~~~~~~---~~~i~aIG~~T 138 (241)
+.+.++. ++.+++.+...
T Consensus 197 l~~~g~~~p~di~iig~d~~~ 217 (268)
T cd06289 197 LRRAGLTPGRDIAVVGFDDVA 217 (268)
T ss_pred HHHcCCCCCcceEEEeecCch
Confidence 8887653 67888887653
No 165
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=67.81 E-value=45 Score=24.29 Aligned_cols=55 Identities=15% Similarity=0.155 Sum_probs=34.2
Q ss_pred eEEEeCC-CCChHHHHHHHHHCCCcEEEeceEEEeeCCCc-hHHHHHHhcCCCccEEEEeCH
Q 026235 52 KVVVTRE-RGKNGKLIKALAKHRIDCLELPLIQHAQGPDT-DRLSSVLNADTIFDWIIITSP 111 (241)
Q Consensus 52 ~VLitR~-~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~-~~l~~~l~~l~~~d~IiFTS~ 111 (241)
+|||..+ ......+.+.++++|++.... -+-...... ..+.. .+.+.|.||+..-
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~h--g~~~~~~~~~~~l~~---~i~~aD~VIv~t~ 57 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHH--GRDGGDEKKASRLPS---KIKKADLVIVFTD 57 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEE--ecCCCCccchhHHHH---hcCCCCEEEEEeC
Confidence 3677777 345678999999999998887 111111111 12333 4578899876543
No 166
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=67.71 E-value=73 Score=26.91 Aligned_cols=93 Identities=13% Similarity=0.128 Sum_probs=52.6
Q ss_pred CeEEEeCCCC-ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEe----CHHHHHHHHHHHHhcC
Q 026235 51 PKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAWKEAG 125 (241)
Q Consensus 51 ~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFT----S~~aV~~f~~~l~~~~ 125 (241)
+||++....+ ....+.+.|++.|+++..+|..... .+...+. +..+|.||++ ++.....-...++...
T Consensus 1 ~~ilv~d~~~~~~~~~~~~l~~~G~~~~~~~~~~~~----~~~~~~~---~~~~dgliisGGp~~~~~~~~~~~~i~~~~ 73 (214)
T PRK07765 1 MRILVVDNYDSFVFNLVQYLGQLGVEAEVWRNDDPR----LADEAAV---AAQFDGVLLSPGPGTPERAGASIDMVRACA 73 (214)
T ss_pred CeEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCcC----HHHHHHh---hcCCCEEEECCCCCChhhcchHHHHHHHHH
Confidence 4666665543 3456888999999999988765311 1111121 3579999998 5543332223333221
Q ss_pred CCCcEEEEeCHHHHHHHHHhhhccCCCCcee
Q 026235 126 TPNVRIGVVGAGTASIFEEVIQSSKCSLDVA 156 (241)
Q Consensus 126 ~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~ 156 (241)
-.+++++.|.-+-.-....+ |-++.
T Consensus 74 ~~~~PiLGIC~G~Qlla~a~------GG~v~ 98 (214)
T PRK07765 74 AAGTPLLGVCLGHQAIGVAF------GATVD 98 (214)
T ss_pred hCCCCEEEEccCHHHHHHHh------CCEEe
Confidence 13577766665533333444 77664
No 167
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=67.66 E-value=13 Score=31.02 Aligned_cols=32 Identities=19% Similarity=0.239 Sum_probs=21.0
Q ss_pred CCCCeEEEeCCC----------------C-ChHHHHHHHHHCCCcEEEe
Q 026235 48 NSNPKVVVTRER----------------G-KNGKLIKALAKHRIDCLEL 79 (241)
Q Consensus 48 l~g~~VLitR~~----------------~-~~~~l~~~L~~~G~~v~~~ 79 (241)
|+|++||||.+. + .+..+++.+..+|++|..+
T Consensus 1 l~gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li 49 (185)
T PF04127_consen 1 LKGKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLI 49 (185)
T ss_dssp -TT-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEE
T ss_pred CCCCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEE
Confidence 456777777553 2 2577899999999998865
No 168
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=67.29 E-value=93 Score=27.79 Aligned_cols=160 Identities=10% Similarity=0.070 Sum_probs=86.1
Q ss_pred eEEEeCCCCChHHHH----HHHHHCCCcEEEeceEEEeeCCCchHHHHHHh---cCCCccEEEEeCH--HHHH--HHHHH
Q 026235 52 KVVVTRERGKNGKLI----KALAKHRIDCLELPLIQHAQGPDTDRLSSVLN---ADTIFDWIIITSP--EAGS--VFLEA 120 (241)
Q Consensus 52 ~VLitR~~~~~~~l~----~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~---~l~~~d~IiFTS~--~aV~--~f~~~ 120 (241)
-++.....+.+..+. +.+++.|+++..+-+-+.. ..+++.+.++ .....|.|+.--| ..++ ..++.
T Consensus 36 aii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~---~~~~l~~~I~~lN~d~~V~GIivqlPlp~~i~~~~i~~~ 112 (284)
T PRK14179 36 VVILVGDNPASQVYVRNKERSALAAGFKSEVVRLPETI---SQEELLDLIERYNQDPTWHGILVQLPLPKHINEEKILLA 112 (284)
T ss_pred EEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhc
Confidence 355555554444443 5677889888765443221 2234444443 4468899998766 2221 12222
Q ss_pred HHh-cCCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCC--CCccEEEEEcc-CCCchhHHHH
Q 026235 121 WKE-AGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYPAS-AKASNEIEEG 196 (241)
Q Consensus 121 l~~-~~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~--~~~~~iL~~~g-~~~~~~L~~~ 196 (241)
+.. ...++..-+-+|.-. . |-. .+.| -|+.+.++.|..+. ..|+++.++-- ..-..-|...
T Consensus 113 I~p~KDVDGl~~~N~g~l~------~------~~~-~~~P--cTp~avi~lL~~~~i~l~Gk~v~vIG~S~ivG~Pla~l 177 (284)
T PRK14179 113 IDPKKDVDGFHPMNTGHLW------S------GRP-VMIP--CTPAGIMEMFREYNVELEGKHAVVIGRSNIVGKPMAQL 177 (284)
T ss_pred cCccccccccCHhhHHHHh------C------CCC-CCcC--CCHHHHHHHHHHhCCCCCCCEEEEECCCCcCcHHHHHH
Confidence 211 112344333333321 1 211 2344 58899998887653 46788887744 4444558888
Q ss_pred HHhCCCeeeEeeeeeeecCCCChHHHHHHcCCCCEEEEECC
Q 026235 197 LSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASP 237 (241)
Q Consensus 197 L~~~G~~V~~~~vY~~~~~~~~~~~~~~~l~~id~IvFtSp 237 (241)
|.++|++|.-+ ... .. .+.+...+.|+|+..-+
T Consensus 178 L~~~gatVtv~---~s~--t~---~l~~~~~~ADIVI~avg 210 (284)
T PRK14179 178 LLDKNATVTLT---HSR--TR---NLAEVARKADILVVAIG 210 (284)
T ss_pred HHHCCCEEEEE---CCC--CC---CHHHHHhhCCEEEEecC
Confidence 88999888665 111 11 12222357788776543
No 169
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=67.15 E-value=47 Score=32.17 Aligned_cols=139 Identities=12% Similarity=0.094 Sum_probs=78.2
Q ss_pred CChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHh-cCCCCcEEEEeCH-H
Q 026235 60 GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE-AGTPNVRIGVVGA-G 137 (241)
Q Consensus 60 ~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~-~~~~~~~i~aIG~-~ 137 (241)
..-.++.+.|++.|+++...+. .....++ |...+....-+.-++.+.....+.|++ .+.+-..+--+|- .
T Consensus 215 gD~~eik~lLe~~Gl~v~~~~~----gg~t~~e----i~~~~~A~lniv~~~~~~~~~A~~Leer~GiP~~~~~~~Gi~~ 286 (513)
T TIGR01861 215 GDQEVMVDYFQRMGIQVLSTFT----GNGSYDD----LRGMHRAHLNVLECARSAEYICNELRKRYGIPRLDIDGFGFEP 286 (513)
T ss_pred cCHHHHHHHHHHCCCeEEEEeC----CCCCHHH----HHhhccCCEEEEECHHHHHHHHHHHHHHhCCCeEecCcCCHHH
Confidence 3457899999999999985432 1112232 335566666555556656677777765 3444333223564 5
Q ss_pred HHHHHHHhhhccCCCCcee---ecCCCC-CHHHHHHHhhhCCCCccEEEEEccCCCchhHHHHHH-hCCCeeeEeee
Q 026235 138 TASIFEEVIQSSKCSLDVA---FSPSKA-TGKILASELPKNGKKKCTVLYPASAKASNEIEEGLS-NRGFEVVRLNT 209 (241)
Q Consensus 138 Ta~~L~~~~~~~~~Gi~~~---~~p~~~-t~e~L~~~l~~~~~~~~~iL~~~g~~~~~~L~~~L~-~~G~~V~~~~v 209 (241)
|.+.|++. ..++|+... ++|++. -..+-++..... ..|+|+.+..+....--+...|. +.|.++..+..
T Consensus 287 Td~~Lr~l--a~~~g~~~~~e~~I~~e~~~~r~~Ld~~~~~-L~GKrvai~~gg~~~~~~~~~l~~ElGmevv~~~t 360 (513)
T TIGR01861 287 LAASLRKV--AMFFGIEDEAQAIIDEETARWKPELDWYKER-LKGKKVCLWPGGSKLWHWAHVIEEEMGLKVVSVYS 360 (513)
T ss_pred HHHHHHHH--HHHhCCChhHhHhhHHHHHHHHHHHHHHHHh-cCCCEEEEECCchHHHHHHHHHHHhCCCEEEEEec
Confidence 66777765 223364321 122111 111112222233 35889988877655556888888 69998855544
No 170
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=67.06 E-value=76 Score=30.72 Aligned_cols=165 Identities=13% Similarity=0.105 Sum_probs=85.8
Q ss_pred eEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHH-HHHHHHHhcCCCCcE
Q 026235 52 KVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGS-VFLEAWKEAGTPNVR 130 (241)
Q Consensus 52 ~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~-~f~~~l~~~~~~~~~ 130 (241)
+|+++.+-. +...+.|++.++++...+ ..+.+++. +.+.++|.++..+...+. .+++. .++++
T Consensus 1 ~vli~~~~~--~~~~~~l~~~~~~~~~~~------~~~~~~~~---~~~~~~d~li~~~~~~~~~~~l~~-----~~~Lk 64 (525)
T TIGR01327 1 KVLIADPIS--PDGIDILEDVGVEVDVQT------GLSREELL---EIIPDYDALIVRSATKVTEEVIAA-----APKLK 64 (525)
T ss_pred CEEEeCCCC--HHHHHHHHhcCcEEEeCC------CCCHHHHH---HHhcCCCEEEEcCCCCcCHHHHhh-----CCCce
Confidence 367776542 455567777766665321 11223333 345789988775542222 22222 23455
Q ss_pred EEE---eCHH--HHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhh--------------------C--------CCC
Q 026235 131 IGV---VGAG--TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK--------------------N--------GKK 177 (241)
Q Consensus 131 i~a---IG~~--Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~--------------------~--------~~~ 177 (241)
+++ +|-- -.+++.+. |+.+.-.|. .+++.+++.... + ...
T Consensus 65 ~I~~~~~G~d~id~~~~~~~------gI~V~n~pg-~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~ 137 (525)
T TIGR01327 65 VIGRAGVGVDNIDIEAATAR------GILVVNAPT-GNTISAAEHALAMLLAAARNIPQADASLKEGEWDRKAFMGTELY 137 (525)
T ss_pred EEEECCcccchhcHHHHHHC------CCEEEeCCC-cChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCccccccCccccC
Confidence 443 3322 23566777 998765553 444444433210 0 124
Q ss_pred ccEEEEEccCCCchhHHHHHHhCCCeeeEeeeeeeecC--CCC---hHHHHHHcCCCCEEEEECCcc
Q 026235 178 KCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPV--HHV---DQTVLKQALSIPVVAVASPSA 239 (241)
Q Consensus 178 ~~~iL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~--~~~---~~~~~~~l~~id~IvFtSps~ 239 (241)
++++.++--..-...+...|+..|.+|..+.-|..... ... ...+.+.+.+.|+|++.-|.+
T Consensus 138 gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt 204 (525)
T TIGR01327 138 GKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISPERAEQLGVELVDDLDELLARADFITVHTPLT 204 (525)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChhHHHhcCCEEcCCHHHHHhhCCEEEEccCCC
Confidence 56777775544456788999988876654433311100 000 012233347899999887754
No 171
>PRK07308 flavodoxin; Validated
Probab=67.04 E-value=18 Score=28.30 Aligned_cols=74 Identities=19% Similarity=0.130 Sum_probs=42.9
Q ss_pred eEEEeCCCCChHHHH----HHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHH--------HHHHHHH
Q 026235 52 KVVVTRERGKNGKLI----KALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE--------AGSVFLE 119 (241)
Q Consensus 52 ~VLitR~~~~~~~l~----~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~--------aV~~f~~ 119 (241)
.|+........+.++ +.|++.|.++...++ ... +. ..+..+|.|+|-|+. .+..|++
T Consensus 5 ~IvY~S~tGnTe~iA~~ia~~l~~~g~~~~~~~~---~~~-~~-------~~l~~~d~vi~g~~t~g~G~~p~~~~~fl~ 73 (146)
T PRK07308 5 KIVYASMTGNTEEIADIVADKLRELGHDVDVDEC---TTV-DA-------SDFEDADIAIVATYTYGDGELPDEIVDFYE 73 (146)
T ss_pred EEEEECCCchHHHHHHHHHHHHHhCCCceEEEec---ccC-CH-------hHhccCCEEEEEeCccCCCCCCHHHHHHHH
Confidence 355444444444444 455666776543322 111 11 134678888887754 4666777
Q ss_pred HHHhcCCCCcEEEEeCH
Q 026235 120 AWKEAGTPNVRIGVVGA 136 (241)
Q Consensus 120 ~l~~~~~~~~~i~aIG~ 136 (241)
.+....+.+.+++++|-
T Consensus 74 ~l~~~~l~~k~~~vfG~ 90 (146)
T PRK07308 74 DLADLDLSGKIYGVVGS 90 (146)
T ss_pred HHhcCCCCCCEEEEEee
Confidence 77665567788888887
No 172
>cd01544 PBP1_GalR Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalR is a dimeric protein like GalS and is exclusively involved in the regulation of galactose permease, the low-affinity galactose transporter. GalS is involved in regulating expression of the high-affinity galactose transporter encoded by the mgl operon. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are structurally homologous to the periplasmic sugar bindi
Probab=66.97 E-value=55 Score=27.69 Aligned_cols=150 Identities=15% Similarity=0.085 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHHHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~L 142 (241)
..+.+.++++|+.+..... ........ ..+|.+|+.+...- ..+......+++++.+|....+
T Consensus 24 ~gi~~~~~~~g~~~~~~~~--------~~~~~~~~---~~vdgii~~~~~~~----~~~~~~~~~~~pvV~~~~~~~~-- 86 (270)
T cd01544 24 LGIEKRAQELGIELTKFFR--------DDDLLEIL---EDVDGIIAIGKFSQ----EQLAKLAKLNPNLVFVDSNPAP-- 86 (270)
T ss_pred HHHHHHHHHcCCEEEEEec--------cchhHHhc---cCcCEEEEecCCCH----HHHHHHHhhCCCEEEECCCCCC--
Q ss_pred HHhhhccCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEccCCC------------chhHHHHHHhCCCeeeEeeee
Q 026235 143 EEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA------------SNEIEEGLSNRGFEVVRLNTY 210 (241)
Q Consensus 143 ~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~~~~~~iL~~~g~~~------------~~~L~~~L~~~G~~V~~~~vY 210 (241)
. ++.....-.......+++.+.+... ++++++.+... ..-+.+.|.++|. .....++
T Consensus 87 --~------~~~~v~~D~~~a~~~~~~~l~~~g~--~~i~~i~~~~~~~~~~~~~~~~R~~gf~~~~~~~~~-~~~~~~~ 155 (270)
T cd01544 87 --D------GFDSVVPDFEQAVEKALDYLLELGH--TRIGFIGGEEKTTDGHEYIEDPRETAFREYMKEKGL-YDPELIY 155 (270)
T ss_pred --C------CCCEEEECHHHHHHHHHHHHHHcCC--CcEEEECCCcccccccchhhhHHHHHHHHHHHHcCC-CChheEe
Q ss_pred eeecCCCChHHHHHHc--CC----CCEEEEECCccC
Q 026235 211 TTEPVHHVDQTVLKQA--LS----IPVVAVASPSAV 240 (241)
Q Consensus 211 ~~~~~~~~~~~~~~~l--~~----id~IvFtSps~v 240 (241)
..........+..+.+ .. +|+|+..+.+.+
T Consensus 156 ~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~~~d~~a 191 (270)
T cd01544 156 IGDFTVESGYQLMKEALKSLGDNLPTAFFIASDPMA 191 (270)
T ss_pred eCCCCHHHHHHHHHHHHhccCCCCCCEEEEcCcHHH
No 173
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=66.86 E-value=45 Score=25.50 Aligned_cols=95 Identities=22% Similarity=0.239 Sum_probs=57.7
Q ss_pred EEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHH-HHHHHHHHHHhcCCCCcEE
Q 026235 53 VVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE-AGSVFLEAWKEAGTPNVRI 131 (241)
Q Consensus 53 VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~-aV~~f~~~l~~~~~~~~~i 131 (241)
||++.+- .+...+.|++ |+++...+ ..+.+++.+.+ .++|.++..+.. --+.+++.++ ++|+
T Consensus 1 ili~~~~--~~~~~~~l~~-~~~v~~~~------~~~~~~~~~~l---~~~d~ii~~~~~~~~~~~l~~~~-----~Lk~ 63 (133)
T PF00389_consen 1 ILITDPL--PDEEIERLEE-GFEVEFCD------SPSEEELAERL---KDADAIIVGSGTPLTAEVLEAAP-----NLKL 63 (133)
T ss_dssp EEESSS---SHHHHHHHHH-TSEEEEES------SSSHHHHHHHH---TTESEEEESTTSTBSHHHHHHHT-----T-SE
T ss_pred eEEeccC--CHHHHHHHHC-CceEEEeC------CCCHHHHHHHh---CCCeEEEEcCCCCcCHHHHhccc-----eeEE
Confidence 6777764 4677788888 77777666 22334454444 779999987766 2244455443 3443
Q ss_pred EE-eCHH----HHHHHHHhhhccCCCCceeecCCCCCHHHHHHHh
Q 026235 132 GV-VGAG----TASIFEEVIQSSKCSLDVAFSPSKATGKILASEL 171 (241)
Q Consensus 132 ~a-IG~~----Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l 171 (241)
++ .|.+ =-+++.+. |+.+.-+| +..++.+++..
T Consensus 64 I~~~~~G~d~id~~~a~~~------gI~V~n~~-g~~~~aVAE~a 101 (133)
T PF00389_consen 64 ISTAGAGVDNIDLEAAKER------GIPVTNVP-GYNAEAVAEHA 101 (133)
T ss_dssp EEESSSSCTTB-HHHHHHT------TSEEEE-T-TTTHHHHHHHH
T ss_pred EEEcccccCcccHHHHhhC------eEEEEEeC-CcCCcchhccc
Confidence 33 2222 25678888 99886666 46777777665
No 174
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=66.62 E-value=84 Score=27.38 Aligned_cols=130 Identities=18% Similarity=0.125 Sum_probs=70.2
Q ss_pred HHHHHhcCCCccEEEEe-CHHHHHHHHHHHHhcCCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCC-CCCHHHHHHH
Q 026235 93 LSSVLNADTIFDWIIIT-SPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPS-KATGKILASE 170 (241)
Q Consensus 93 l~~~l~~l~~~d~IiFT-S~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~-~~t~e~L~~~ 170 (241)
.++.+ ...+.+.|+-+ +..........+.+. +++++.-...+.. ... ..--.+.|. ......+++.
T Consensus 61 ~~~l~-~~~~v~~vvg~~~s~~~~~~~~~~~~~---~ip~i~~~~~~~~--~~~------~~~f~~~~~~~~~~~~~~~~ 128 (343)
T PF13458_consen 61 ARKLI-DDDGVDAVVGPLSSAQAEAVAPIAEEA---GIPYISPSASSPS--PDS------PNVFRLSPSDSQQAAALAEY 128 (343)
T ss_dssp HHHHH-HTSTESEEEESSSHHHHHHHHHHHHHH---T-EEEESSGGGGT--TTH------TTEEESS--HHHHHHHHHHH
T ss_pred HHHhh-hhcCcEEEEecCCcHHHHHHHHHHHhc---CcEEEEeeccCCC--CCC------CcEEEEeccccHHHHHHHHH
Confidence 34444 33788888875 666677777777764 3555554433321 111 211112232 2345667776
Q ss_pred hhhCCCCccEEEEEccCCC-----chhHHHHHHhCCCeeeEeeeeeeecCCCChHHHHHHc--CCCCEEEEECC
Q 026235 171 LPKNGKKKCTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP 237 (241)
Q Consensus 171 l~~~~~~~~~iL~~~g~~~-----~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~l--~~id~IvFtSp 237 (241)
+.+.. ..+++.++..+.. ...+.+.+++.|.++.....|... ......+...+ .++|+|++.+.
T Consensus 129 ~~~~~-g~~~v~iv~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~--~~d~~~~~~~l~~~~~d~v~~~~~ 199 (343)
T PF13458_consen 129 LAKKL-GAKKVAIVYPDDPYGRSLAEAFRKALEAAGGKVVGEIRYPPG--DTDFSALVQQLKSAGPDVVVLAGD 199 (343)
T ss_dssp HHHTT-TTSEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEE-TT--SSHHHHHHHHHHHTTTSEEEEEST
T ss_pred HHHHc-CCcEEEEEecCchhhhHHHHHHHHHHhhcCceeccceecccc--cccchHHHHHHhhcCCCEEEEecc
Confidence 65543 2478888766532 245788999999886544444321 11122333334 68999887664
No 175
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=66.31 E-value=33 Score=32.05 Aligned_cols=34 Identities=21% Similarity=0.242 Sum_probs=28.1
Q ss_pred CCCCCCeEEEeCC----------------CC-ChHHHHHHHHHCCCcEEEe
Q 026235 46 ASNSNPKVVVTRE----------------RG-KNGKLIKALAKHRIDCLEL 79 (241)
Q Consensus 46 ~~l~g~~VLitR~----------------~~-~~~~l~~~L~~~G~~v~~~ 79 (241)
.++.|++||||.+ .. -+..+++.|.++|++|..+
T Consensus 184 ~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v 234 (399)
T PRK05579 184 KDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLV 234 (399)
T ss_pred cccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEe
Confidence 4578999999988 33 2788999999999999764
No 176
>PRK06849 hypothetical protein; Provisional
Probab=66.05 E-value=47 Score=30.45 Aligned_cols=90 Identities=17% Similarity=0.172 Sum_probs=52.9
Q ss_pred CCCeEEEeCCCC-ChHHHHHHHHHCCCcEEEeceEE--------------EeeCC--Cc----hHHHHHHhcCCCccEEE
Q 026235 49 SNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQ--------------HAQGP--DT----DRLSSVLNADTIFDWII 107 (241)
Q Consensus 49 ~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~--------------~~~~~--~~----~~l~~~l~~l~~~d~Ii 107 (241)
.+|+||||.... ..-.+++.|.++|++|+.+-.-. ..+.+ +. +.+.+.++ -.++|.||
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~~~~~~s~~~d~~~~~p~p~~d~~~~~~~L~~i~~-~~~id~vI 81 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNAGHTVILADSLKYPLSRFSRAVDGFYTIPSPRWDPDAYIQALLSIVQ-RENIDLLI 81 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHhhhheEEeCCCCCCHHHHHHHHHHHHH-HcCCCEEE
Confidence 469999998875 36789999999999987753221 11111 21 23333332 35789999
Q ss_pred EeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHHH
Q 026235 108 ITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (241)
Q Consensus 108 FTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~ 141 (241)
-|+-. + .+.....+.-...+++..-++.+.+.
T Consensus 82 P~~e~-~-~~~a~~~~~l~~~~~v~~~~~~~~~~ 113 (389)
T PRK06849 82 PTCEE-V-FYLSHAKEELSAYCEVLHFDFELLLL 113 (389)
T ss_pred ECChH-H-HhHHhhhhhhcCCcEEEcCCHHHHHH
Confidence 98875 3 33332222211346666666665543
No 177
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=65.82 E-value=68 Score=30.46 Aligned_cols=131 Identities=15% Similarity=0.084 Sum_probs=74.2
Q ss_pred hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhc-CCCCcEEEEeCH-HHH
Q 026235 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA-GTPNVRIGVVGA-GTA 139 (241)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~-~~~~~~i~aIG~-~Ta 139 (241)
-.++.+.|++.|+++...-. .....++ +...+..+.-+..++.....+.+.+++. +.+-+.+-.+|. .|.
T Consensus 214 ~~el~~lL~~~Gl~v~~~~~----g~~s~~e----i~~~~~A~lniv~~~~~~~~~A~~Le~~~GiP~~~~~~~G~~~T~ 285 (457)
T TIGR01284 214 LWVLKKYFERMGIQVLSTFT----GNGCYDE----LRWMHRAKLNVVRCARSANYIANELEERYGIPRLDIDFFGFEYCA 285 (457)
T ss_pred HHHHHHHHHHcCCeEEEEEC----CCCCHHH----HHhccccCEEEEEChHHHHHHHHHHHHHhCCCeEecccCCHHHHH
Confidence 46788999999999973111 1111222 3356777776666666556677777653 544333324774 466
Q ss_pred HHHHHhhhccCCCCceeecCCCCCHHHHHH-----------HhhhCCCCccEEEEEccCCCchhHHHHHH-hCCCeeeEe
Q 026235 140 SIFEEVIQSSKCSLDVAFSPSKATGKILAS-----------ELPKNGKKKCTVLYPASAKASNEIEEGLS-NRGFEVVRL 207 (241)
Q Consensus 140 ~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~-----------~l~~~~~~~~~iL~~~g~~~~~~L~~~L~-~~G~~V~~~ 207 (241)
+.|++. ..++|+.. ..+.+++ ..... ..|+|+.+..+....-.+...|. +.|.++..+
T Consensus 286 ~~l~~i--a~~~g~~~-------~~e~~i~~~~~~~~~~ld~~~~~-L~GkrvaI~~~~~~~~~l~~~l~~ElGmevv~~ 355 (457)
T TIGR01284 286 KNLRKI--GEFFGIEE-------RAERVIEEEMAKWKPELDWYKER-LRGKKVWVWSGGPKLWHWPRPLEDELGMEVVAV 355 (457)
T ss_pred HHHHHH--HHHhCCch-------hHHHHHHHHHHHHHHHHHHHHHH-cCCCEEEEECCCcHHHHHHHHHHHhCCCEEEEE
Confidence 666665 12235431 1222222 12122 35789988755432235778886 799998876
Q ss_pred eee
Q 026235 208 NTY 210 (241)
Q Consensus 208 ~vY 210 (241)
..+
T Consensus 356 ~~~ 358 (457)
T TIGR01284 356 STK 358 (457)
T ss_pred EEE
Confidence 554
No 178
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=65.72 E-value=17 Score=33.87 Aligned_cols=82 Identities=15% Similarity=0.121 Sum_probs=59.6
Q ss_pred CCCCCcccceeccccccccCCCCCCCeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccE
Q 026235 26 RPLPFQFSRIQASSDATSASASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDW 105 (241)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~ 105 (241)
..+++++++..+ -.+..++.-..|.+||+.....=.+.+.+.++.+|+++..+-.=--+ ..+.+++.+.|+.-++++.
T Consensus 57 ~~~ll~gsGt~a-mEAav~sl~~pgdkVLv~~nG~FG~R~~~ia~~~g~~v~~~~~~wg~-~v~p~~v~~~L~~~~~~~~ 134 (383)
T COG0075 57 DVVLLSGSGTLA-MEAAVASLVEPGDKVLVVVNGKFGERFAEIAERYGAEVVVLEVEWGE-AVDPEEVEEALDKDPDIKA 134 (383)
T ss_pred cEEEEcCCcHHH-HHHHHHhccCCCCeEEEEeCChHHHHHHHHHHHhCCceEEEeCCCCC-CCCHHHHHHHHhcCCCccE
Confidence 344455555443 24555666667899999999888899999999999999876554222 2356788888876678999
Q ss_pred EEEe
Q 026235 106 IIIT 109 (241)
Q Consensus 106 IiFT 109 (241)
|.+|
T Consensus 135 V~~v 138 (383)
T COG0075 135 VAVV 138 (383)
T ss_pred EEEE
Confidence 9886
No 179
>PRK00170 azoreductase; Reviewed
Probab=65.69 E-value=10 Score=31.15 Aligned_cols=16 Identities=25% Similarity=0.470 Sum_probs=12.3
Q ss_pred HHHcCCCCEEEEECCc
Q 026235 223 LKQALSIPVVAVASPS 238 (241)
Q Consensus 223 ~~~l~~id~IvFtSps 238 (241)
.+.+...|.|||.||.
T Consensus 81 ~~~i~~AD~iV~~sP~ 96 (201)
T PRK00170 81 LEEFLAADKIVIAAPM 96 (201)
T ss_pred HHHHHHCCEEEEeecc
Confidence 3445688999999984
No 180
>PRK13243 glyoxylate reductase; Reviewed
Probab=65.64 E-value=1.1e+02 Score=27.81 Aligned_cols=165 Identities=17% Similarity=0.141 Sum_probs=85.3
Q ss_pred CeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHH-HHHHHHHhcCCCCc
Q 026235 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGS-VFLEAWKEAGTPNV 129 (241)
Q Consensus 51 ~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~-~f~~~l~~~~~~~~ 129 (241)
++|+++.+-. ....+.|++. +++... ......+.+++ ++.+.++|.++..+...+. .+++.+ +++
T Consensus 3 ~kil~~~~~~--~~~~~~l~~~-~~~~~~---~~~~~~~~~~~---~~~~~~~d~~i~~~~~~~~~~~l~~~-----p~L 68 (333)
T PRK13243 3 PKVFITREIP--ENGIEMLEEH-FEVEVW---EDEREIPREVL---LEKVRDVDALVTMLSERIDCEVFEAA-----PRL 68 (333)
T ss_pred ceEEEECCCC--HHHHHHHhcC-ceEEEe---cCCCCCCHHHH---HHHhCCCcEEEEeCCCCCCHHHHhhC-----CCC
Confidence 5688887642 3445566654 343321 11111122333 3345788988765432221 122222 344
Q ss_pred EEE---EeCHH--HHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhh--------h-----------------------
Q 026235 130 RIG---VVGAG--TASIFEEVIQSSKCSLDVAFSPSKATGKILASELP--------K----------------------- 173 (241)
Q Consensus 130 ~i~---aIG~~--Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~--------~----------------------- 173 (241)
+++ .+|-- -.+++.+. |+.+.-.| ..+++.++|... +
T Consensus 69 k~I~~~~~G~d~id~~~~~~~------gI~v~n~~-g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~ 141 (333)
T PRK13243 69 RIVANYAVGYDNIDVEEATRR------GIYVTNTP-GVLTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPL 141 (333)
T ss_pred eEEEecCccccccCHHHHHHc------CCEEEECC-CCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccc
Confidence 443 34432 24566777 98876555 344455544321 0
Q ss_pred ----CCCCccEEEEEccCCCchhHHHHHHhCCCeeeEeeeeeeecCCCCh-------HHHHHHcCCCCEEEEECCcc
Q 026235 174 ----NGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVD-------QTVLKQALSIPVVAVASPSA 239 (241)
Q Consensus 174 ----~~~~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~-------~~~~~~l~~id~IvFtSps~ 239 (241)
....|+++.++.-..-...+.+.|+..|.+| .+|.+.+..... ..+.+.+.+.|+|++.-|.+
T Consensus 142 ~~~g~~L~gktvgIiG~G~IG~~vA~~l~~~G~~V---~~~d~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t 215 (333)
T PRK13243 142 MFLGYDVYGKTIGIIGFGRIGQAVARRAKGFGMRI---LYYSRTRKPEAEKELGAEYRPLEELLRESDFVSLHVPLT 215 (333)
T ss_pred cccccCCCCCEEEEECcCHHHHHHHHHHHHCCCEE---EEECCCCChhhHHHcCCEecCHHHHHhhCCEEEEeCCCC
Confidence 0124567877755555567899999988765 455543322111 11223347889999987754
No 181
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=65.56 E-value=33 Score=25.59 Aligned_cols=26 Identities=23% Similarity=0.429 Sum_probs=20.3
Q ss_pred EEEEEccCCCc-----hhHHHHHHhCCCeee
Q 026235 180 TVLYPASAKAS-----NEIEEGLSNRGFEVV 205 (241)
Q Consensus 180 ~iL~~~g~~~~-----~~L~~~L~~~G~~V~ 205 (241)
+||++||.+.. +.+.+.++++|.++.
T Consensus 2 ~Ill~C~~GaSSs~la~km~~~a~~~gi~~~ 32 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNKGAKERGVPLE 32 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEE
Confidence 68899987754 467888999998764
No 182
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=65.54 E-value=38 Score=30.56 Aligned_cols=74 Identities=18% Similarity=0.158 Sum_probs=42.9
Q ss_pred cEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCC-CCCHHHHHHHhhhCCCCccEEE
Q 026235 104 DWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKKCTVL 182 (241)
Q Consensus 104 d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~-~~t~e~L~~~l~~~~~~~~~iL 182 (241)
.-++|.|=|+.+..-+++ +.+++. |+...-... -.++-.++..+.+....+++|.
T Consensus 55 K~i~fvTNNStksr~~y~------------------kK~~~l------G~~~v~e~~i~ssa~~~a~ylk~~~~~~k~Vy 110 (306)
T KOG2882|consen 55 KQIIFVTNNSTKSREQYM------------------KKFAKL------GFNSVKEENIFSSAYAIADYLKKRKPFGKKVY 110 (306)
T ss_pred CcEEEEeCCCcchHHHHH------------------HHHHHh------CccccCcccccChHHHHHHHHHHhCcCCCeEE
Confidence 566666666665555543 445555 665211111 2355667777766654567888
Q ss_pred EEccCCCchhHHHHHHhCCCeee
Q 026235 183 YPASAKASNEIEEGLSNRGFEVV 205 (241)
Q Consensus 183 ~~~g~~~~~~L~~~L~~~G~~V~ 205 (241)
++.++ .|.+.|++.|++..
T Consensus 111 vig~~----gi~~eL~~aG~~~~ 129 (306)
T KOG2882|consen 111 VIGEE----GIREELDEAGFEYF 129 (306)
T ss_pred Eecch----hhhHHHHHcCceee
Confidence 87554 36677777875543
No 183
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=65.30 E-value=54 Score=28.09 Aligned_cols=86 Identities=12% Similarity=0.066 Sum_probs=45.5
Q ss_pred CCeEEEeCC----CCChHHHHH----HHHHCCCcEEEeceEEEeeCCC-----chHHHHHHhcCCCccEEEEeCH-----
Q 026235 50 NPKVVVTRE----RGKNGKLIK----ALAKHRIDCLELPLIQHAQGPD-----TDRLSSVLNADTIFDWIIITSP----- 111 (241)
Q Consensus 50 g~~VLitR~----~~~~~~l~~----~L~~~G~~v~~~P~~~~~~~~~-----~~~l~~~l~~l~~~d~IiFTS~----- 111 (241)
-++|++.-+ ...+..+.+ .+.+.|+++..+.+-. -|..+ .+.+...-+.+...|++||.||
T Consensus 26 ~~kI~~I~GSlR~~S~n~~la~~~~~~~~~~g~~v~~idl~~-lPl~~~d~~~~p~v~~l~~~v~~ADgvii~TPEYn~s 104 (219)
T TIGR02690 26 IPRILLLYGSLRERSYSRLLAEEAARLLGCEGRETRIFDPPG-LPLPDAAHADHPKVRELRQLSEWSEGQVWCSPERHGA 104 (219)
T ss_pred CCEEEEEECCCCCcchHHHHHHHHHHHHhhcCCEEEEeCccc-CCCCCcCcccCHHHHHHHHHHHhCCEEEEeCCccccC
Confidence 356655433 333444444 4444688887665321 12211 1223333334477899999998
Q ss_pred --HHHHHHHHHHHhc-----CCCCcEEEEeCH
Q 026235 112 --EAGSVFLEAWKEA-----GTPNVRIGVVGA 136 (241)
Q Consensus 112 --~aV~~f~~~l~~~-----~~~~~~i~aIG~ 136 (241)
.+.+++++.+... .+.+++++++|-
T Consensus 105 ipg~LKNaiDwls~~~~~~~~~~~Kpvaivga 136 (219)
T TIGR02690 105 ITGSQKDQIDWIPLSVGPVRPTQGKTLAVMQV 136 (219)
T ss_pred cCHHHHHHHHhcccCcccccccCCCcEEEEEe
Confidence 4566666655432 245666666653
No 184
>COG1909 Uncharacterized protein conserved in archaea [Function unknown]
Probab=65.29 E-value=15 Score=30.05 Aligned_cols=71 Identities=14% Similarity=0.072 Sum_probs=47.7
Q ss_pred EEEeCHHHHHHHHHhhhccCCCCceeec---------------------------CCCCCHHHHHHHhhhCCCCc-cEEE
Q 026235 131 IGVVGAGTASIFEEVIQSSKCSLDVAFS---------------------------PSKATGKILASELPKNGKKK-CTVL 182 (241)
Q Consensus 131 i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~---------------------------p~~~t~e~L~~~l~~~~~~~-~~iL 182 (241)
+++||..|.+.+.+. |+.+++. |...-+..++++|++....+ ...+
T Consensus 38 litVGDvvT~n~~~~------gl~P~l~ivD~KT~R~~~~~~~~~~~~~~i~V~NpPGtIt~el~~ai~~a~~~~k~~~I 111 (167)
T COG1909 38 LITVGDVVTRNLIEV------GLIPDLAIVDGKTKRREPVDQNRIVFKRVIKVRNPPGTITFELIKAIEKALEDGKRVRI 111 (167)
T ss_pred EEEEchHHHHHHHHh------CCCCcEEEeeccccccccchhcccccceEEEEeCCCcEeEHHHHHHHHHHHhcCCcEEE
Confidence 999999999999999 8877542 11112356666776543333 3567
Q ss_pred EEccCCCchhHHHHHHhCCCeeeEeeee
Q 026235 183 YPASAKASNEIEEGLSNRGFEVVRLNTY 210 (241)
Q Consensus 183 ~~~g~~~~~~L~~~L~~~G~~V~~~~vY 210 (241)
++.|++..-.|+..|- +....+.+|
T Consensus 112 ~V~GEEDLa~lp~i~~---ap~~tvV~Y 136 (167)
T COG1909 112 FVDGEEDLAVLPAILY---APLGTVVLY 136 (167)
T ss_pred EEeChhHHHHhHHHhh---cCCCCEEEe
Confidence 7888887777777774 344566777
No 185
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=65.07 E-value=66 Score=29.88 Aligned_cols=141 Identities=15% Similarity=0.110 Sum_probs=74.8
Q ss_pred CChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHh-cCCCCcEEEEeCH-H
Q 026235 60 GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE-AGTPNVRIGVVGA-G 137 (241)
Q Consensus 60 ~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~-~~~~~~~i~aIG~-~ 137 (241)
....++.+.|++.|+++..... .....+++ ...+....-|..++..-..+.+.+++ .+.+-+...-+|. .
T Consensus 171 ~d~~el~~lL~~~Gl~v~~~~~----~~~s~eei----~~~~~A~lniv~~~~~~~~~a~~L~~~fGip~~~~~p~G~~~ 242 (410)
T cd01968 171 GELWGVKPLLEKLGIRVLASIT----GDSRVDEI----RRAHRAKLNVVQCSKSMIYLARKMEEKYGIPYIEVSFYGIRD 242 (410)
T ss_pred ccHHHHHHHHHHcCCeEEEEeC----CCCCHHHH----HhhhhCcEEEEEchhHHHHHHHHHHHHhCCCeEecCcCcHHH
Confidence 3457999999999999875411 11122333 24456666665555444445666654 3443222111553 5
Q ss_pred HHHHHHHhhhccCCCCce--eecCCC--CCHHHHHHHhhhC--CCCccEEEEEccCCCchhHHHHHHhCCCeeeEeeee
Q 026235 138 TASIFEEVIQSSKCSLDV--AFSPSK--ATGKILASELPKN--GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTY 210 (241)
Q Consensus 138 Ta~~L~~~~~~~~~Gi~~--~~~p~~--~t~e~L~~~l~~~--~~~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~~~vY 210 (241)
|.+.|++.. ..+|... +..++. ..-+.+.+.+... ...|+++.+..+....-.+.+.|.+.|.+|..+.++
T Consensus 243 t~~~l~~ia--~~~g~~~~~~~~~~~i~~e~~~~~~~l~~~~~~l~gkrv~i~~~~~~~~~la~~l~elGm~v~~~~~~ 319 (410)
T cd01968 243 TSKSLRNIA--ELLGDEELIERTEELIAREEARLRPELAPYRARLEGKKAALYTGGVKSWSLVSALQDLGMEVVATGTQ 319 (410)
T ss_pred HHHHHHHHH--HHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCCchHHHHHHHHHHCCCEEEEEecc
Confidence 666666651 1225431 000000 0011123333321 135789887755444567889999999998777544
No 186
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=64.79 E-value=53 Score=24.04 Aligned_cols=74 Identities=20% Similarity=0.255 Sum_probs=40.8
Q ss_pred EEEeCCCC-C----hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCCC
Q 026235 53 VVVTRERG-K----NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTP 127 (241)
Q Consensus 53 VLitR~~~-~----~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~ 127 (241)
||+..+.+ . ...+.+.++++|.++ ++.... ..++.. ...++| +|+++|.-...+-+.-+.....
T Consensus 2 Il~~Cg~G~sTS~~~~ki~~~~~~~~~~~------~v~~~~-~~~~~~---~~~~~D-iil~~Pqv~~~~~~i~~~~~~~ 70 (96)
T cd05564 2 ILLVCSAGMSTSILVKKMKKAAEKRGIDA------EIEAVP-ESELEE---YIDDAD-VVLLGPQVRYMLDEVKKKAAEY 70 (96)
T ss_pred EEEEcCCCchHHHHHHHHHHHHHHCCCce------EEEEec-HHHHHH---hcCCCC-EEEEChhHHHHHHHHHHHhccC
Confidence 55555543 2 345666777888763 333221 222222 236788 6667777655544432223335
Q ss_pred CcEEEEeCHH
Q 026235 128 NVRIGVVGAG 137 (241)
Q Consensus 128 ~~~i~aIG~~ 137 (241)
++++..|++.
T Consensus 71 ~~pv~~I~~~ 80 (96)
T cd05564 71 GIPVAVIDMM 80 (96)
T ss_pred CCcEEEcChH
Confidence 7889998875
No 187
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=64.76 E-value=45 Score=27.00 Aligned_cols=35 Identities=26% Similarity=0.158 Sum_probs=20.9
Q ss_pred CccEEEEeCHHHHHHHHHHHHhcCC--CCcEEEEeCH
Q 026235 102 IFDWIIITSPEAGSVFLEAWKEAGT--PNVRIGVVGA 136 (241)
Q Consensus 102 ~~d~IiFTS~~aV~~f~~~l~~~~~--~~~~i~aIG~ 136 (241)
+.++|+..+......+...+.+.++ .+..+++.+.
T Consensus 182 ~~~~i~~~~~~~a~~~~~~~~~~g~~~~~~~ii~~~~ 218 (269)
T cd01391 182 KPDAIFACNDEMAAGALKAAREAGLTPGDISIIGFDG 218 (269)
T ss_pred CCCEEEEcCchHHHHHHHHHHHcCCCCCCCEEEeccc
Confidence 5667776666666666666666655 3455555443
No 188
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=64.11 E-value=17 Score=29.36 Aligned_cols=18 Identities=28% Similarity=0.250 Sum_probs=13.7
Q ss_pred HHHHHcCCCCEEEEECCc
Q 026235 221 TVLKQALSIPVVAVASPS 238 (241)
Q Consensus 221 ~~~~~l~~id~IvFtSps 238 (241)
++.+.+...|+|+|.||.
T Consensus 58 ~l~~~i~~AD~iI~~sP~ 75 (171)
T TIGR03567 58 AATAQVAQADGVVVATPV 75 (171)
T ss_pred HHHHHHHHCCEEEEECCc
Confidence 445556789999999984
No 189
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=63.99 E-value=1.3e+02 Score=29.01 Aligned_cols=133 Identities=18% Similarity=0.147 Sum_probs=77.9
Q ss_pred ChHHHHHHHHHCCCcEEEe-ceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHh-cCCCCcEEEEeC-HH
Q 026235 61 KNGKLIKALAKHRIDCLEL-PLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE-AGTPNVRIGVVG-AG 137 (241)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~-P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~-~~~~~~~i~aIG-~~ 137 (241)
+-.++.+.|+..|+++..+ |. ....++ |..++..+.-|..++..-....+.+++ .+.+-+...=+| ..
T Consensus 176 D~~elkrlL~~lGi~vn~v~p~-----g~s~~d----l~~l~~A~~NIv~~~~~g~~~A~~Le~~fGiP~i~~~PiG~~~ 246 (511)
T TIGR01278 176 DLIELRRLLKTLGIEVNVVAPW-----GASIAD----LARLPAAWLNICPYREIGLMAAEYLKEKFGQPYITTTPIGVNA 246 (511)
T ss_pred HHHHHHHHHHHCCCeEEEEeCC-----CCCHHH----HHhcccCcEEEEechHHHHHHHHHHHHHhCCCcccccccCHHH
Confidence 4578999999999999765 52 112232 334566666666677554555666654 355544445577 56
Q ss_pred HHHHHHHhhhccCC---CCceeecCCCCCHHHHHH--------------HhhhCCCCccEEEEEccCCCchhHHHHHH-h
Q 026235 138 TASIFEEVIQSSKC---SLDVAFSPSKATGKILAS--------------ELPKNGKKKCTVLYPASAKASNEIEEGLS-N 199 (241)
Q Consensus 138 Ta~~L~~~~~~~~~---Gi~~~~~p~~~t~e~L~~--------------~l~~~~~~~~~iL~~~g~~~~~~L~~~L~-~ 199 (241)
|.+.|++.. .++ |+.+. .+.+++ .+..+...|+++++..+..-.-.+...|. +
T Consensus 247 T~~fL~~l~--~~~~~~g~~~~-------~e~~i~~e~~~~~~~~~~~r~~d~~~l~Gkrv~I~gd~~~a~~l~~~L~~E 317 (511)
T TIGR01278 247 TRRFIREIA--ALLNQAGADPY-------YESFILDGLSAVSQAAWFARSIDSQSLTGKRAFVFGDATHAVGMTKILARE 317 (511)
T ss_pred HHHHHHHHH--HHHhhcCCCCc-------HHHHHHhhhhhhhhHHHHHhhhhhHHhcCCeEEEEcCcHHHHHHHHHHHHh
Confidence 777777762 112 43321 111111 01111235789988865544556788897 8
Q ss_pred CCCeeeEeeeee
Q 026235 200 RGFEVVRLNTYT 211 (241)
Q Consensus 200 ~G~~V~~~~vY~ 211 (241)
.|.++.....|.
T Consensus 318 lG~~vv~~gt~~ 329 (511)
T TIGR01278 318 LGIHIVGAGTYC 329 (511)
T ss_pred CCCEEEecCCch
Confidence 999997665554
No 190
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=63.97 E-value=1.7e+02 Score=30.71 Aligned_cols=33 Identities=12% Similarity=0.012 Sum_probs=27.7
Q ss_pred CCCCCeEEEeCCCCChHHHHHHHHHCCCcEEEe
Q 026235 47 SNSNPKVVVTRERGKNGKLIKALAKHRIDCLEL 79 (241)
Q Consensus 47 ~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~ 79 (241)
+..|++|+|..+.+..-..+..|.+.|++|..+
T Consensus 303 ~~~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVf 335 (944)
T PRK12779 303 AAVKPPIAVVGSGPSGLINAYLLAVEGFPVTVF 335 (944)
T ss_pred cCCCCeEEEECCCHHHHHHHHHHHHCCCeEEEE
Confidence 345999999999988888888999999987755
No 191
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=63.94 E-value=55 Score=23.99 Aligned_cols=76 Identities=14% Similarity=0.214 Sum_probs=42.0
Q ss_pred CCeEEEeCCCCC-----hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhc
Q 026235 50 NPKVVVTRERGK-----NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA 124 (241)
Q Consensus 50 g~~VLitR~~~~-----~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~ 124 (241)
.++||+....+- ...+.+.++++|.++. +.... ..++.+. ..++| +|+++|.-... +..+++.
T Consensus 3 ~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~------v~a~~-~~~~~~~---~~~~D-vill~pqi~~~-~~~i~~~ 70 (95)
T TIGR00853 3 ETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVK------IAAGS-YGAAGEK---LDDAD-VVLLAPQVAYM-LPDLKKE 70 (95)
T ss_pred ccEEEEECCCchhHHHHHHHHHHHHHHCCCcEE------EEEec-HHHHHhh---cCCCC-EEEECchHHHH-HHHHHHH
Confidence 478888877653 2455666778888743 32221 2223332 35788 55566654443 3334432
Q ss_pred -CCCCcEEEEeCHH
Q 026235 125 -GTPNVRIGVVGAG 137 (241)
Q Consensus 125 -~~~~~~i~aIG~~ 137 (241)
.-.++++..|.+.
T Consensus 71 ~~~~~ipv~~I~~~ 84 (95)
T TIGR00853 71 TDKKGIPVEVINGA 84 (95)
T ss_pred hhhcCCCEEEeChh
Confidence 1235788888764
No 192
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=63.93 E-value=26 Score=28.61 Aligned_cols=58 Identities=17% Similarity=0.137 Sum_probs=39.9
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHH
Q 026235 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA 113 (241)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~a 113 (241)
..+.|++|+|.....- ...+++.|.++|+++... .. ..+++.+. +..+|.||.+++..
T Consensus 40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~---~r----~~~~l~~~---l~~aDiVIsat~~~ 98 (168)
T cd01080 40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVC---HS----KTKNLKEH---TKQADIVIVAVGKP 98 (168)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEE---EC----CchhHHHH---HhhCCEEEEcCCCC
Confidence 4678999999988763 666999999999864322 21 12344443 46789888777664
No 193
>PRK08605 D-lactate dehydrogenase; Validated
Probab=63.81 E-value=1.1e+02 Score=27.68 Aligned_cols=131 Identities=15% Similarity=0.152 Sum_probs=65.4
Q ss_pred cCCCccEEEEeCHHHHH-HHHHHHHhcCCCCcEEEEeCHHH--HHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhh--
Q 026235 99 ADTIFDWIIITSPEAGS-VFLEAWKEAGTPNVRIGVVGAGT--ASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK-- 173 (241)
Q Consensus 99 ~l~~~d~IiFTS~~aV~-~f~~~l~~~~~~~~~i~aIG~~T--a~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~-- 173 (241)
.+.++|++++.+...+. .+++.+++.+++-+....+|--. -+++++. |+.+.-.|. +.++.++|....
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~lk~I~~~~~G~d~id~~~~~~~------gi~v~n~~~-~~~~~vAE~~~~~~ 114 (332)
T PRK08605 42 EVEGFDGLSLSQQIPLSEAIYKLLNELGIKQIAQRSAGFDTYDLELATKY------NLIISNVPS-YSPESIAEFTVTQA 114 (332)
T ss_pred HhcCCCEEEEecCCCCCHHHHHhhhhcCceEEEEcccccchhhHHHHHHC------CCEEEeCCC-CChHHHHHHHHHHH
Confidence 45788988776532222 33444443222212222233222 3556777 888765553 444444433210
Q ss_pred ---------------------------CCCCccEEEEEccCCCchhHHHHH-HhCCCeeeEeeeeeeecCCCC------h
Q 026235 174 ---------------------------NGKKKCTVLYPASAKASNEIEEGL-SNRGFEVVRLNTYTTEPVHHV------D 219 (241)
Q Consensus 174 ---------------------------~~~~~~~iL~~~g~~~~~~L~~~L-~~~G~~V~~~~vY~~~~~~~~------~ 219 (241)
....|+++.++....-...+...| +..|.+| ..|...+.... .
T Consensus 115 l~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V---~~~d~~~~~~~~~~~~~~ 191 (332)
T PRK08605 115 INLVRHFNQIQTKVREHDFRWEPPILSRSIKDLKVAVIGTGRIGLAVAKIFAKGYGSDV---VAYDPFPNAKAATYVDYK 191 (332)
T ss_pred HHHhcChHHHHHHHHhCCcccccccccceeCCCEEEEECCCHHHHHHHHHHHhcCCCEE---EEECCCccHhHHhhcccc
Confidence 012356777765444445677787 5556554 45554332110 0
Q ss_pred HHHHHHcCCCCEEEEECCcc
Q 026235 220 QTVLKQALSIPVVAVASPSA 239 (241)
Q Consensus 220 ~~~~~~l~~id~IvFtSps~ 239 (241)
..+.+.+.+.|+|++.-|.+
T Consensus 192 ~~l~ell~~aDvIvl~lP~t 211 (332)
T PRK08605 192 DTIEEAVEGADIVTLHMPAT 211 (332)
T ss_pred CCHHHHHHhCCEEEEeCCCC
Confidence 12222346899999988764
No 194
>PRK08339 short chain dehydrogenase; Provisional
Probab=63.79 E-value=57 Score=27.90 Aligned_cols=85 Identities=16% Similarity=0.191 Sum_probs=48.2
Q ss_pred CCCCCeEEEeCCCC-ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccE--EE--EeCHHHHHHHHHHH
Q 026235 47 SNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDW--II--ITSPEAGSVFLEAW 121 (241)
Q Consensus 47 ~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~--Ii--FTS~~aV~~f~~~l 121 (241)
.+.||++|||.... -...+++.|.++|++|... .+. ....+.+.+.+......+. +. +++..+++.+++.+
T Consensus 5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~--~r~--~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~ 80 (263)
T PRK08339 5 DLSGKLAFTTASSKGIGFGVARVLARAGADVILL--SRN--EENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKEL 80 (263)
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEE--eCC--HHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHH
Confidence 36789999998764 4778999999999987643 111 0111222222221112222 21 48888998888876
Q ss_pred HhcCCCCcEEEEeC
Q 026235 122 KEAGTPNVRIGVVG 135 (241)
Q Consensus 122 ~~~~~~~~~i~aIG 135 (241)
.+.+.-+.-+.+.|
T Consensus 81 ~~~g~iD~lv~nag 94 (263)
T PRK08339 81 KNIGEPDIFFFSTG 94 (263)
T ss_pred HhhCCCcEEEECCC
Confidence 54332233444444
No 195
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=63.77 E-value=88 Score=26.33 Aligned_cols=47 Identities=19% Similarity=0.249 Sum_probs=32.1
Q ss_pred HHHHHhcCC-CccEEEEeCHHHHHHHHHHHHhcCC---CCcEEEEeCHHHH
Q 026235 93 LSSVLNADT-IFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGAGTA 139 (241)
Q Consensus 93 l~~~l~~l~-~~d~IiFTS~~aV~~f~~~l~~~~~---~~~~i~aIG~~Ta 139 (241)
+.+.+.... ..|+|+.++-.........+.+.++ +++.+++.+....
T Consensus 175 ~~~~l~~~~~~~~aI~~~~d~~a~g~~~a~~~~g~~ip~di~iig~d~~~~ 225 (273)
T cd06309 175 MEALLKAHGDDIDAVYAHNDEMALGAIQAIKAAGKKPGKDIKIVSIDGTKD 225 (273)
T ss_pred HHHHHHhCCCCccEEEECCcHHHHHHHHHHHHcCCCCCCCeEEEecCCCHH
Confidence 444453333 6888888887777777787877765 3678888876543
No 196
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=63.76 E-value=20 Score=29.82 Aligned_cols=47 Identities=26% Similarity=0.188 Sum_probs=29.2
Q ss_pred hHHHHHHhCCCeeeEeeeeeeecC--------CCChHHHHHHcCCCCEEEEECCc
Q 026235 192 EIEEGLSNRGFEVVRLNTYTTEPV--------HHVDQTVLKQALSIPVVAVASPS 238 (241)
Q Consensus 192 ~L~~~L~~~G~~V~~~~vY~~~~~--------~~~~~~~~~~l~~id~IvFtSps 238 (241)
.+.+.|.+.|+++..+.+|+-... .+...++.+.+.+.|+|+|-||.
T Consensus 22 ~~~~~l~~~g~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~ 76 (191)
T PRK10569 22 YAREWLNGLGVEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLAQADGLIVATPV 76 (191)
T ss_pred HHHHHHHhCCCEEEEEEccCCChHHHHhccCCCHHHHHHHHHHHHCCEEEEECCc
Confidence 455667777888888877742210 01112334445789999999984
No 197
>PRK09739 hypothetical protein; Provisional
Probab=63.70 E-value=20 Score=29.67 Aligned_cols=47 Identities=17% Similarity=0.215 Sum_probs=30.7
Q ss_pred hHHHHHHhCCCeeeEeeeeeeecC------------------CCChHHHHHHcCCCCEEEEECCc
Q 026235 192 EIEEGLSNRGFEVVRLNTYTTEPV------------------HHVDQTVLKQALSIPVVAVASPS 238 (241)
Q Consensus 192 ~L~~~L~~~G~~V~~~~vY~~~~~------------------~~~~~~~~~~l~~id~IvFtSps 238 (241)
.+.+.|++.|.+|..+.+|+.... .+...+..+.+...|.|||.+|.
T Consensus 25 ~~~~~~~~~g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~iV~~~P~ 89 (199)
T PRK09739 25 AIHQRAQERGHQVEELDLYRSGFDPVLTPEDEPDWKNPDKRYSPEVHQLYSELLEHDALVFVFPL 89 (199)
T ss_pred HHHHHHHHCCCEEEEEEhhhhCCCCCCCHHHhhhhcccCCCCCHHHHHHHHHHHhCCEEEEECch
Confidence 456677778888888888874311 00112344456789999999984
No 198
>PRK01355 azoreductase; Reviewed
Probab=63.43 E-value=20 Score=29.79 Aligned_cols=46 Identities=20% Similarity=0.231 Sum_probs=27.2
Q ss_pred HHHHHHh--CCCeeeEeeeeeeecC--------------CCChHHHHHHcCCCCEEEEECCc
Q 026235 193 IEEGLSN--RGFEVVRLNTYTTEPV--------------HHVDQTVLKQALSIPVVAVASPS 238 (241)
Q Consensus 193 L~~~L~~--~G~~V~~~~vY~~~~~--------------~~~~~~~~~~l~~id~IvFtSps 238 (241)
+.+.+++ .|.+|..+.+|+...+ .+...++.+++...|+|||.||.
T Consensus 26 ~~~~~~~~~~~~~v~~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~iV~~sP~ 87 (199)
T PRK01355 26 FVEEYKKVNPNDEIIILDLNETKVGSVTLTSENFKTFFKEEVSDKYINQLKSVDKVVISCPM 87 (199)
T ss_pred HHHHHHHhCCCCeEEEEeCCCCCCCcccCCHHHHHhhcCchhHHHHHHHHHhCCEEEEEcCc
Confidence 4445555 3467777777765431 11112334445789999999984
No 199
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=63.41 E-value=18 Score=29.50 Aligned_cols=53 Identities=21% Similarity=0.260 Sum_probs=41.2
Q ss_pred CCceeecCCCCCHHHHHHHhhhCCCC-ccEEEEEccCCCchhHHHHHHhCCCeeeEe
Q 026235 152 SLDVAFSPSKATGKILASELPKNGKK-KCTVLYPASAKASNEIEEGLSNRGFEVVRL 207 (241)
Q Consensus 152 Gi~~~~~p~~~t~e~L~~~l~~~~~~-~~~iL~~~g~~~~~~L~~~L~~~G~~V~~~ 207 (241)
|+.+.|.++..+++.+++.+...... +..+.++.++. .++......|+.+...
T Consensus 67 gi~Vvft~~~~tAD~~Ie~~v~~~~~~~~~v~VVTSD~---~iq~~~~~~GA~~iss 120 (166)
T PF05991_consen 67 GIEVVFTKEGETADDYIERLVRELKNRPRQVTVVTSDR---EIQRAARGRGAKRISS 120 (166)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhccCCCeEEEEeCCH---HHHHHHhhCCCEEEcH
Confidence 99999999889999999998766443 57999998864 5666667788766543
No 200
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=63.37 E-value=78 Score=25.52 Aligned_cols=124 Identities=15% Similarity=0.126 Sum_probs=65.8
Q ss_pred CCccEEEEeCHHHHHH-HHHHHHhcCCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCC-CCHHHHHHHhhhCCCCc
Q 026235 101 TIFDWIIITSPEAGSV-FLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKK 178 (241)
Q Consensus 101 ~~~d~IiFTS~~aV~~-f~~~l~~~~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~-~t~e~L~~~l~~~~~~~ 178 (241)
..+|.|+......... ....+.. .+++++++|....... .. ..-..+.+.. ...+.+++.+.+.. .
T Consensus 57 ~~~d~ii~~~~~~~~~~~~~~~~~---~~ip~v~~~~~~~~~~-~~------~~~~~~~~~~~~~~~~~~~~l~~~~--~ 124 (269)
T cd01391 57 QGVDGIIGPPSSSSALAVVELAAA---AGIPVVSLDATAPDLT-GY------PYVFRVGPDNEQAGEAAAEYLAEKG--W 124 (269)
T ss_pred cCCCEEEecCCCHHHHHHHHHHHH---cCCcEEEecCCCCccC-CC------ceEEEEcCCcHHHHHHHHHHHHHhC--C
Confidence 4789999876653332 4444443 4578888876543221 11 1111233332 24566777776664 4
Q ss_pred cEEEEEccCCC-c-----hhHHHHHHhCCCeeeEeeeeeeecCCCChHHHHHHc--C-CCCEEEEECC
Q 026235 179 CTVLYPASAKA-S-----NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--L-SIPVVAVASP 237 (241)
Q Consensus 179 ~~iL~~~g~~~-~-----~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~l--~-~id~IvFtSp 237 (241)
+++.++.+... . ..+.+.+++.|.++.....+..... .....+.+.+ . ++++|+..+.
T Consensus 125 ~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~i~~~~~ 191 (269)
T cd01391 125 KRVALIYGDDGAYGRERLEGFKAALKKAGIEVVAIEYGDLDTE-KGFQALLQLLKAAPKPDAIFACND 191 (269)
T ss_pred ceEEEEecCCcchhhHHHHHHHHHHHhcCcEEEeccccCCCcc-ccHHHHHHHHhcCCCCCEEEEcCc
Confidence 68888877652 1 3466677777755544333322211 1223333334 2 5788887764
No 201
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=63.36 E-value=35 Score=31.84 Aligned_cols=34 Identities=18% Similarity=0.106 Sum_probs=27.3
Q ss_pred CCCCCCeEEEeCCCC-----------------ChHHHHHHHHHCCCcEEEe
Q 026235 46 ASNSNPKVVVTRERG-----------------KNGKLIKALAKHRIDCLEL 79 (241)
Q Consensus 46 ~~l~g~~VLitR~~~-----------------~~~~l~~~L~~~G~~v~~~ 79 (241)
.++.|++||||.+.. -+..+++.|..+|++|..+
T Consensus 181 ~~~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~ 231 (390)
T TIGR00521 181 EDLEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLI 231 (390)
T ss_pred cccCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEe
Confidence 457899999997732 4678999999999998764
No 202
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=63.31 E-value=35 Score=28.01 Aligned_cols=46 Identities=17% Similarity=0.122 Sum_probs=28.4
Q ss_pred HHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCC---CCcEEEEeCHHH
Q 026235 93 LSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGAGT 138 (241)
Q Consensus 93 l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~---~~~~i~aIG~~T 138 (241)
+.+.+....+.|+|+.++......+...+.+.+. .++.+++.+...
T Consensus 169 ~~~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~g~~i~~~i~i~~~d~~~ 217 (264)
T cd01537 169 AEELLTAHPDPTAIFAANDDMALGALRALREAGLRVPDDISVIGFDGTP 217 (264)
T ss_pred HHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHhCCCCCCCeEEEeecCcc
Confidence 4444433345788888876666666677777665 356667666443
No 203
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=63.24 E-value=21 Score=28.94 Aligned_cols=64 Identities=13% Similarity=0.061 Sum_probs=38.5
Q ss_pred HCCCcEEEeceEEEeeC------C--CchHHHHHHhcCCCccEEEEeCH-------HHHHHHHHHHHhcCCCCcEEEEe
Q 026235 71 KHRIDCLELPLIQHAQG------P--DTDRLSSVLNADTIFDWIIITSP-------EAGSVFLEAWKEAGTPNVRIGVV 134 (241)
Q Consensus 71 ~~G~~v~~~P~~~~~~~------~--~~~~l~~~l~~l~~~d~IiFTS~-------~aV~~f~~~l~~~~~~~~~i~aI 134 (241)
+.|.++..+-+.+..+. . ..+.+.+..+.+...|.|||.|| ...++|++.+....+.+++++.+
T Consensus 29 ~~g~ev~~idL~~~~~~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~Y~~s~~~~LKn~lD~~~~~~l~~K~~~~v 107 (174)
T TIGR03566 29 RLGISPRTIDLADLAPSLGGALWRSQLPPDAERILQAIESADLLVVGSPVYRGSYTGLFKHLFDLVDPNALIGKPVLLA 107 (174)
T ss_pred hcCCeEEEEEhhhcChhhccccccCCCCHHHHHHHHHHHHCCEEEEECCcCcCcCcHHHHHHHHhcCHhHhCCCEEEEE
Confidence 45788777665553210 0 12345555566788999999998 56677777654333445555444
No 204
>PRK06841 short chain dehydrogenase; Provisional
Probab=62.97 E-value=50 Score=27.67 Aligned_cols=38 Identities=13% Similarity=-0.016 Sum_probs=28.1
Q ss_pred ccccCCCCCCCeEEEeCCCC-ChHHHHHHHHHCCCcEEE
Q 026235 41 ATSASASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLE 78 (241)
Q Consensus 41 ~~~~~~~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~ 78 (241)
+...+.+++|++||||.... -...+++.|.++|+++..
T Consensus 6 ~~~~~~~~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~ 44 (255)
T PRK06841 6 QFDLAFDLSGKVAVVTGGASGIGHAIAELFAAKGARVAL 44 (255)
T ss_pred cchhhcCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEE
Confidence 33444567899999998754 467788899999987653
No 205
>PRK04017 hypothetical protein; Provisional
Probab=62.92 E-value=43 Score=26.47 Aligned_cols=83 Identities=14% Similarity=0.176 Sum_probs=50.4
Q ss_pred HHHHHHHHhcCCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCC-CCCHHHHHHHhhhCCCCccEEEEEcc-CCC---
Q 026235 115 SVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKKCTVLYPAS-AKA--- 189 (241)
Q Consensus 115 ~~f~~~l~~~~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~-~~t~e~L~~~l~~~~~~~~~iL~~~g-~~~--- 189 (241)
..+.+.+.+.+..+..|++=|+.=.++|++. |+.+++... ........+.+.. .++.|+++.- +..
T Consensus 10 ~e~i~~L~e~s~~g~vIVVEGk~D~~~L~~l------Gv~~~iI~t~g~~~~~~~e~ia~---~~r~VIILTD~D~~Gek 80 (132)
T PRK04017 10 EEIIEELKEFSEAGAPIIVEGKRDVESLRKL------GVEGEIIKVSRTPLAEIAELIAS---RGKEVIILTDFDRKGEE 80 (132)
T ss_pred HHHHHHHHHhcCCCCEEEEeCccHHHHHHHc------CCCccEEEECCeecchHHHHHHh---cCCeEEEEECCCcchHH
Confidence 3344555555556788999999999999999 997655432 2222333344422 2345555543 333
Q ss_pred -chhHHHHHHhCCCeeeE
Q 026235 190 -SNEIEEGLSNRGFEVVR 206 (241)
Q Consensus 190 -~~~L~~~L~~~G~~V~~ 206 (241)
+..|.+.|+..|+.|+.
T Consensus 81 Ir~~l~~~l~~~G~~vd~ 98 (132)
T PRK04017 81 LAKKLSEYLQGYGIKVDT 98 (132)
T ss_pred HHHHHHHHHHhCCCCccH
Confidence 34567778888887754
No 206
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=62.88 E-value=54 Score=27.06 Aligned_cols=65 Identities=12% Similarity=0.039 Sum_probs=40.2
Q ss_pred CCCCCeEEEeCCCC-ChHHHHHHHHHCCCcEEEece---------EEEeeCCCchHHHHHHhcCCCccEEEEeCH
Q 026235 47 SNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPL---------IQHAQGPDTDRLSSVLNADTIFDWIIITSP 111 (241)
Q Consensus 47 ~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~---------~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~ 111 (241)
++.|++++||.... -...+.+.|.++|+++..+-- ....+.+-.+.+.+.++..+..|.||....
T Consensus 2 ~l~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~lv~~ag 76 (235)
T PRK06550 2 EFMTKTVLITGAASGIGLAQARAFLAQGAQVYGVDKQDKPDLSGNFHFLQLDLSDDLEPLFDWVPSVDILCNTAG 76 (235)
T ss_pred CCCCCEEEEcCCCchHHHHHHHHHHHCCCEEEEEeCCcccccCCcEEEEECChHHHHHHHHHhhCCCCEEEECCC
Confidence 46789999998754 367788999999998764321 111121111224455555577888887643
No 207
>PRK07206 hypothetical protein; Provisional
Probab=62.88 E-value=1.1e+02 Score=28.24 Aligned_cols=66 Identities=20% Similarity=0.104 Sum_probs=41.3
Q ss_pred CeEEEeCCCCChHHHHHHHHHCCCcEEEeceE-------E----------EeeCCCchHHHHHHhcCCCccEEEEeCHHH
Q 026235 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPLI-------Q----------HAQGPDTDRLSSVLNADTIFDWIIITSPEA 113 (241)
Q Consensus 51 ~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~-------~----------~~~~~~~~~l~~~l~~l~~~d~IiFTS~~a 113 (241)
|++|+..+......+.+.++++|++++.+-.- . .....+.+.+.+.++. ..+|.|+-++=..
T Consensus 3 k~~liv~~~~~~~~~~~a~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~-~~~d~vi~~~e~~ 81 (416)
T PRK07206 3 KKVVIVDPFSSGKFLAPAFKKRGIEPIAVTSSCLLDPYYYASFDTSDFIEVIINGDIDDLVEFLRK-LGPEAIIAGAESG 81 (416)
T ss_pred CeEEEEcCCchHHHHHHHHHHcCCeEEEEEcCCCCchhhhcccCcccchhhhcCCCHHHHHHHHHH-cCCCEEEECCCcc
Confidence 67888888777788999999999987754211 0 0011122344444533 5689988776555
Q ss_pred HHHH
Q 026235 114 GSVF 117 (241)
Q Consensus 114 V~~f 117 (241)
+...
T Consensus 82 ~~~~ 85 (416)
T PRK07206 82 VELA 85 (416)
T ss_pred HHHH
Confidence 5543
No 208
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=62.20 E-value=1.3e+02 Score=30.01 Aligned_cols=98 Identities=12% Similarity=0.125 Sum_probs=58.0
Q ss_pred ccEEEEeC------HHHHHHHHHHHHhcCCCCcEEEEeCHHHHHHHHHhhhcc-----CCC--------Cceee-----c
Q 026235 103 FDWIIITS------PEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSS-----KCS--------LDVAF-----S 158 (241)
Q Consensus 103 ~d~IiFTS------~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~L~~~~~~~-----~~G--------i~~~~-----~ 158 (241)
--+||++| ..++++|...+.+ +.-.++.+|-.+...+-..+|.. ..| +++.+ .
T Consensus 494 ~p~VIiatsGMl~gG~~~~~l~~l~~d---~kn~IifvGyqa~gTlGr~l~~g~~~i~i~g~~~~~~i~v~~~V~~~~gf 570 (630)
T TIGR03675 494 EPAIILATSGMLNGGPVVEYLKLLAPD---PRNSLVFVGYQAEGTLGRRIQSGWREIPLTDEGKTETIKINMEVETVEGF 570 (630)
T ss_pred CCEEEEECCCCCCcchHHHHHHHHcCC---CCCeEEEeCCCCCCchHHHHhcCCcEEEecCCCCceEEEEEEEEEEeCCc
Confidence 35677765 3345555443322 34567777866655554434431 111 01111 2
Q ss_pred CCCCCHHHHHHHhhhCCCCccEEEEEccCCC-chhHHHHHHhC-CCe
Q 026235 159 PSKATGKILASELPKNGKKKCTVLYPASAKA-SNEIEEGLSNR-GFE 203 (241)
Q Consensus 159 p~~~t~e~L~~~l~~~~~~~~~iL~~~g~~~-~~~L~~~L~~~-G~~ 203 (241)
+.+.+-.+|++.+....++.++|++.+|+.. ...|.+.|.+. |++
T Consensus 571 SaHaD~~~L~~~v~~~~p~p~~v~lvHGe~~~~~~la~~l~~~~~~~ 617 (630)
T TIGR03675 571 SGHSDRRQLMNYVRRMQPKPEKILLNHGEPSKILDLASSIYKKFNIE 617 (630)
T ss_pred cccCCHHHHHHHHHhcCCCCCEEEEEcCCHHHHHHHHHHHHHHhCCc
Confidence 4467889999888876555579999999864 46788888754 544
No 209
>PRK08250 glutamine amidotransferase; Provisional
Probab=62.17 E-value=48 Score=28.43 Aligned_cols=52 Identities=15% Similarity=0.116 Sum_probs=34.4
Q ss_pred CeEEEeCCC--CChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCH
Q 026235 51 PKVVVTRER--GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP 111 (241)
Q Consensus 51 ~~VLitR~~--~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~ 111 (241)
|||++.+.. .....+...+++.|+++....+++-.+.+ ....+||.||++-.
T Consensus 1 m~i~vi~h~~~e~~g~~~~~~~~~g~~~~~~~~~~g~~~p---------~~~~~~d~vii~GG 54 (235)
T PRK08250 1 MRVHFIIHESFEAPGAYLKWAENRGYDISYSRVYAGEALP---------ENADGFDLLIVMGG 54 (235)
T ss_pred CeEEEEecCCCCCchHHHHHHHHCCCeEEEEEccCCCCCC---------CCccccCEEEECCC
Confidence 466666554 45678889999999888775555322211 13467999999755
No 210
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=62.07 E-value=36 Score=24.90 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=20.2
Q ss_pred cEEEEEccCCC------chhHHHHHHhCCCee
Q 026235 179 CTVLYPASAKA------SNEIEEGLSNRGFEV 204 (241)
Q Consensus 179 ~~iL~~~g~~~------~~~L~~~L~~~G~~V 204 (241)
.++|++||.+- ...+++.|+++|+++
T Consensus 3 ~kILvvCgsG~~TS~m~~~ki~~~l~~~gi~~ 34 (94)
T PRK10310 3 RKIIVACGGAVATSTMAAEEIKELCQSHNIPV 34 (94)
T ss_pred CeEEEECCCchhHHHHHHHHHHHHHHHCCCeE
Confidence 47999999875 356678888999864
No 211
>PLN02253 xanthoxin dehydrogenase
Probab=61.97 E-value=54 Score=28.05 Aligned_cols=34 Identities=12% Similarity=0.096 Sum_probs=26.4
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEe
Q 026235 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (241)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (241)
..+.||++|||..... ...+++.|.++|+++..+
T Consensus 14 ~~l~~k~~lItGas~gIG~~la~~l~~~G~~v~~~ 48 (280)
T PLN02253 14 QRLLGKVALVTGGATGIGESIVRLFHKHGAKVCIV 48 (280)
T ss_pred cccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEE
Confidence 3466899999988653 667888899999987654
No 212
>PRK06490 glutamine amidotransferase; Provisional
Probab=61.91 E-value=65 Score=27.76 Aligned_cols=94 Identities=10% Similarity=-0.048 Sum_probs=52.1
Q ss_pred CCCeEEEeCCC--CChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHH-H-------HHHH
Q 026235 49 SNPKVVVTRER--GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA-G-------SVFL 118 (241)
Q Consensus 49 ~g~~VLitR~~--~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~a-V-------~~f~ 118 (241)
..++|++.+.. +....+.+.|++.|.++.....+.-.+.+ ..+.+||.+|+|-... + ....
T Consensus 6 ~~~~vlvi~h~~~~~~g~l~~~l~~~g~~~~v~~~~~~~~~p---------~~l~~~dgvii~Ggp~~~~d~~~wi~~~~ 76 (239)
T PRK06490 6 DKRPVLIVLHQERSTPGRVGQLLQERGYPLDIRRPRLGDPLP---------DTLEDHAGAVIFGGPMSANDPDDFIRREI 76 (239)
T ss_pred CCceEEEEecCCCCCChHHHHHHHHCCCceEEEeccCCCCCC---------CcccccCEEEEECCCCCCCCCchHHHHHH
Confidence 35788888664 35677999999999988765433211111 1346789888874332 2 2222
Q ss_pred HHHHhcCCCCcEEEEeCHHHHHHHHHhhhccCCCCceee
Q 026235 119 EAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAF 157 (241)
Q Consensus 119 ~~l~~~~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~ 157 (241)
+.+.+.-..+++++.|.-.-.-..+.+ |-++.-
T Consensus 77 ~~i~~~~~~~~PvLGIC~G~Qlla~al------GG~V~~ 109 (239)
T PRK06490 77 DWISVPLKENKPFLGICLGAQMLARHL------GARVAP 109 (239)
T ss_pred HHHHHHHHCCCCEEEECHhHHHHHHHc------CCEeec
Confidence 222221113577766665533333344 766543
No 213
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=61.82 E-value=13 Score=28.69 Aligned_cols=49 Identities=16% Similarity=0.220 Sum_probs=34.2
Q ss_pred ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhc-CCCccEEEEeCHHH
Q 026235 61 KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA-DTIFDWIIITSPEA 113 (241)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~-l~~~d~IiFTS~~a 113 (241)
....+.+.|++.|+++....+.. ++.+.+.+.+.. ...+|.||.|...+
T Consensus 19 ~~~~l~~~l~~~G~~~~~~~~v~----Dd~~~I~~~l~~~~~~~dliittGG~g 68 (135)
T smart00852 19 NGPALAELLTELGIEVTRYVIVP----DDKEAIKEALREALERADLVITTGGTG 68 (135)
T ss_pred cHHHHHHHHHHCCCeEEEEEEeC----CCHHHHHHHHHHHHhCCCEEEEcCCCC
Confidence 35678999999999988766553 455556565543 25689888887665
No 214
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=61.40 E-value=1e+02 Score=27.51 Aligned_cols=159 Identities=13% Similarity=0.099 Sum_probs=88.3
Q ss_pred EEEeCCCCChHHH----HHHHHHCCCcEEEeceEEEeeCCCchHHHHHHh---cCCCccEEEEeCH--HHHH--HHHHHH
Q 026235 53 VVVTRERGKNGKL----IKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN---ADTIFDWIIITSP--EAGS--VFLEAW 121 (241)
Q Consensus 53 VLitR~~~~~~~l----~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~---~l~~~d~IiFTS~--~aV~--~f~~~l 121 (241)
+++....+.+..+ .+.+++.|+++..+-+-+. ...+++.+.++ .....|.|+.--| ..++ ..++.+
T Consensus 31 ii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~---~~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~v~~~I 107 (279)
T PRK14178 31 TVIVGDDPASQMYVRMKHRACERVGIGSVGIELPGD---ATTRTVLERIRRLNEDPDINGILVQLPLPKGVDTERVIAAI 107 (279)
T ss_pred EEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCC---CCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhcc
Confidence 5555554443333 4467778988776544222 12234444443 4478899998877 2222 122222
Q ss_pred Hh-cCCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCC--CCccEEEEEccC-CCchhHHHHH
Q 026235 122 KE-AGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYPASA-KASNEIEEGL 197 (241)
Q Consensus 122 ~~-~~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~--~~~~~iL~~~g~-~~~~~L~~~L 197 (241)
.. ...++..-.-+|.-- . |-. .+.| -|+.+.++.|..+. ..|++++++-.. ....-|...|
T Consensus 108 ~p~KDVDGl~~~n~g~l~------~------~~~-~~~P--cTp~av~~ll~~~~i~l~Gk~V~ViGrs~~vGrpla~lL 172 (279)
T PRK14178 108 LPEKDVDGFHPLNLGRLV------S------GLP-GFAP--CTPNGIMTLLHEYKISIAGKRAVVVGRSIDVGRPMAALL 172 (279)
T ss_pred CcccCcccCChhhHHHHh------C------CCC-CCCC--CCHHHHHHHHHHcCCCCCCCEEEEECCCccccHHHHHHH
Confidence 11 122444444444321 1 322 2444 58999998887663 467887777444 4555688888
Q ss_pred HhCCCeeeEeeeeeeecCCCChHHHHHHcCCCCEEEEECC
Q 026235 198 SNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASP 237 (241)
Q Consensus 198 ~~~G~~V~~~~vY~~~~~~~~~~~~~~~l~~id~IvFtSp 237 (241)
...|++|..+.-.. ..+.+.+.+.|+|+-+-+
T Consensus 173 ~~~~atVtv~hs~t--------~~L~~~~~~ADIvI~Avg 204 (279)
T PRK14178 173 LNADATVTICHSKT--------ENLKAELRQADILVSAAG 204 (279)
T ss_pred HhCCCeeEEEecCh--------hHHHHHHhhCCEEEECCC
Confidence 88998887765321 223333467888876544
No 215
>PRK03094 hypothetical protein; Provisional
Probab=61.36 E-value=15 Score=26.46 Aligned_cols=36 Identities=22% Similarity=0.453 Sum_probs=25.6
Q ss_pred CCchhHHHHHHhCCCeeeEeeeeeeecCCCChHHHHHHcCCCCEEEEEC
Q 026235 188 KASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVAS 236 (241)
Q Consensus 188 ~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~l~~id~IvFtS 236 (241)
.+..++.+.|+++|++|..+.-|.. ...+|+++.|.
T Consensus 8 ~~Ls~i~~~L~~~GYeVv~l~~~~~-------------~~~~Da~VitG 43 (80)
T PRK03094 8 QSLTDVQQALKQKGYEVVQLRSEQD-------------AQGCDCCVVTG 43 (80)
T ss_pred cCcHHHHHHHHHCCCEEEecCcccc-------------cCCcCEEEEeC
Confidence 4567899999999999977753321 14677777764
No 216
>PRK06932 glycerate dehydrogenase; Provisional
Probab=61.36 E-value=50 Score=29.67 Aligned_cols=60 Identities=10% Similarity=0.011 Sum_probs=36.8
Q ss_pred CccEEEEEccCCCchhHHHHHHhCCCeeeEeeeeeeecCCC---ChHHHHHHcCCCCEEEEECCcc
Q 026235 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHH---VDQTVLKQALSIPVVAVASPSA 239 (241)
Q Consensus 177 ~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~---~~~~~~~~l~~id~IvFtSps~ 239 (241)
.|+++.++.-......+.+.|+.-|.+|.. |.+..... ....+.+.+.+.|+|++.-|.+
T Consensus 146 ~gktvgIiG~G~IG~~va~~l~~fg~~V~~---~~~~~~~~~~~~~~~l~ell~~sDiv~l~~Plt 208 (314)
T PRK06932 146 RGSTLGVFGKGCLGTEVGRLAQALGMKVLY---AEHKGASVCREGYTPFEEVLKQADIVTLHCPLT 208 (314)
T ss_pred CCCEEEEECCCHHHHHHHHHHhcCCCEEEE---ECCCcccccccccCCHHHHHHhCCEEEEcCCCC
Confidence 467887775555556788999988887654 44322111 1112333347899999987754
No 217
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=61.16 E-value=18 Score=29.36 Aligned_cols=45 Identities=22% Similarity=0.145 Sum_probs=28.6
Q ss_pred HHHHHhhhCC--CCccEEEEEccCCCch----hHHHHHHhCCCeeeEeeee
Q 026235 166 ILASELPKNG--KKKCTVLYPASAKASN----EIEEGLSNRGFEVVRLNTY 210 (241)
Q Consensus 166 ~L~~~l~~~~--~~~~~iL~~~g~~~~~----~L~~~L~~~G~~V~~~~vY 210 (241)
++.+.+.+.. ....+++++||.+.+. .+...|.++|++|.-+.++
T Consensus 11 ~~a~~i~~~~~~~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~ 61 (169)
T PF03853_consen 11 AIAELIRKLFGSPKGPRVLILCGPGNNGGDGLVAARHLANRGYNVTVYLVG 61 (169)
T ss_dssp HHHHHHHHHSTCCTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHHhcccCCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEEEEEe
Confidence 4444444433 4568999999986442 5788999999987654443
No 218
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=60.97 E-value=51 Score=31.30 Aligned_cols=144 Identities=16% Similarity=0.108 Sum_probs=81.4
Q ss_pred CChHHHHHHHHHCCCcEEEeceEEE------------eeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhc-CC
Q 026235 60 GKNGKLIKALAKHRIDCLELPLIQH------------AQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA-GT 126 (241)
Q Consensus 60 ~~~~~l~~~L~~~G~~v~~~P~~~~------------~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~-~~ 126 (241)
..-.++.+.|+..|+++..+|-+.- .+..+ ..+.+ +...++...-|..++.+ ..+.+.+++. +.
T Consensus 182 ~D~~elk~lL~~~Gl~v~~lpd~s~~ld~~l~~~~~~~~~gg-~t~ee-i~~~~~A~lniv~~~~~-~~~a~~Lee~~Gi 258 (455)
T PRK14476 182 GDIEELREIIEAFGLEPIILPDLSGSLDGHLPDDWTPTTLGG-TTLEE-IRELGRSAATIAIGESM-RKAAEALEARTGV 258 (455)
T ss_pred ccHHHHHHHHHHcCCceEEecCccccccCCCCCcccccCCCC-CCHHH-HHhhccCcEEEEecHHH-HHHHHHHHHHhCC
Confidence 4568999999999999988875431 01111 12222 33456666666667765 4666666653 44
Q ss_pred CCcEE-EEeCH-HHHHHHHHhhhccCCCCceeecCCCC--CHHHHHHHhhhC--CCCccEEEEEccCCCchhHHHHHHhC
Q 026235 127 PNVRI-GVVGA-GTASIFEEVIQSSKCSLDVAFSPSKA--TGKILASELPKN--GKKKCTVLYPASAKASNEIEEGLSNR 200 (241)
Q Consensus 127 ~~~~i-~aIG~-~Ta~~L~~~~~~~~~Gi~~~~~p~~~--t~e~L~~~l~~~--~~~~~~iL~~~g~~~~~~L~~~L~~~ 200 (241)
+-+.. .-+|- .|.+.|++.. .++|..+ |+.. .-+.+.+.|.+. ...++++.+..+....--|.+.|.+.
T Consensus 259 P~~~~~~p~G~~~t~~~l~~l~--~~~g~~~---~~~i~~er~~~~~~~~d~~~~l~gkrvai~~~~~~~~~la~~L~el 333 (455)
T PRK14476 259 PYLVFPSLTGLEAVDRFIATLA--QISGRPV---PAKYRRQRAQLQDAMLDGHFYFGGKRVAIAAEPDLLLALGSFLAEM 333 (455)
T ss_pred CeEecCCCcChHHHHHHHHHHH--HHHCCCC---cHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeCHHHHHHHHHHHHHC
Confidence 42222 22565 5666676651 2235432 2111 112244444332 13478887775443334588999999
Q ss_pred CCeeeEeeeee
Q 026235 201 GFEVVRLNTYT 211 (241)
Q Consensus 201 G~~V~~~~vY~ 211 (241)
|.++..+.+..
T Consensus 334 G~~v~~~~~~~ 344 (455)
T PRK14476 334 GAEIVAAVTTT 344 (455)
T ss_pred CCEEEEEEeCC
Confidence 99998877654
No 219
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=60.90 E-value=1e+02 Score=27.75 Aligned_cols=137 Identities=15% Similarity=0.095 Sum_probs=75.8
Q ss_pred EEEeCCCCChHHH----HHHHHHCCCcEEEeceEEEeeCCCchHHHHHHh---cCCCccEEEEeCH--HHHH--HHHHHH
Q 026235 53 VVVTRERGKNGKL----IKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN---ADTIFDWIIITSP--EAGS--VFLEAW 121 (241)
Q Consensus 53 VLitR~~~~~~~l----~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~---~l~~~d~IiFTS~--~aV~--~f~~~l 121 (241)
+++....+....+ .+.+++.|+++..+-+-+. ...+++.+.+. +....|.|++--| ..++ ..++.+
T Consensus 37 ~i~vg~~~~s~~Yv~~k~k~a~~~Gi~~~~~~l~~~---~~~~el~~~i~~lN~d~~V~GIlvq~Plp~~~~~~~i~~~I 113 (296)
T PRK14188 37 VVLVGEDPASQVYVRSKGKQTKEAGMASFEHKLPAD---TSQAELLALIARLNADPAIHGILVQLPLPKHLDSEAVIQAI 113 (296)
T ss_pred EEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCC---CCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCHHHHHhcc
Confidence 4455554444333 3456778988665433221 12234444443 4467899999877 2222 122222
Q ss_pred Hh-cCCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCC--CCccEEEEEc-cCCCchhHHHHH
Q 026235 122 KE-AGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYPA-SAKASNEIEEGL 197 (241)
Q Consensus 122 ~~-~~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~--~~~~~iL~~~-g~~~~~~L~~~L 197 (241)
.. ...++..-.-+| .|- . |-. .+.| -|+.+.++.|..+. ..|++++++- +..-..-|...|
T Consensus 114 ~p~KDVDGl~~~n~g-----~l~-~------~~~-~~~P--cTp~ai~~ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L 178 (296)
T PRK14188 114 DPEKDVDGLHVVNAG-----RLA-T------GET-ALVP--CTPLGCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLL 178 (296)
T ss_pred CcccccccCChhhHH-----HHh-C------CCC-CCcC--CCHHHHHHHHHHhCCCCCCCEEEEEcCCcchHHHHHHHH
Confidence 11 112344433333 221 2 322 2444 58899998887652 4688988885 555556688899
Q ss_pred HhCCCeeeEe
Q 026235 198 SNRGFEVVRL 207 (241)
Q Consensus 198 ~~~G~~V~~~ 207 (241)
.+.|++|.-+
T Consensus 179 ~~~g~tVtv~ 188 (296)
T PRK14188 179 LAANATVTIA 188 (296)
T ss_pred HhCCCEEEEE
Confidence 8999777544
No 220
>COG1497 Predicted transcriptional regulator [Transcription]
Probab=60.79 E-value=23 Score=30.96 Aligned_cols=63 Identities=13% Similarity=0.151 Sum_probs=50.1
Q ss_pred EEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEccCCCchhHHHHHHhCCCee
Q 026235 130 RIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEV 204 (241)
Q Consensus 130 ~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~~~~~~iL~~~g~~~~~~L~~~L~~~G~~V 204 (241)
.++++|...--++++. |+++|+.- .+.++.+++-. .|..+|+++...-...+.+.|.+.|.+.
T Consensus 190 ~iaAmG~~a~va~rkl------giePdi~F--g~~~a~ieAa~----rGl~vlvv~t~~ml~~~~~~l~~~~~eY 252 (260)
T COG1497 190 IIAAMGTEALVALRKL------GIEPDIEF--GTLEAAIEAAV----RGLSVLVVITRRMLRYLLRKLEEEGLEY 252 (260)
T ss_pred hhhhhhHHHHHHHHHc------CCCCCeee--cccHHHHHHHh----cCCcEEEEEeHHHHHHHHHHHHhcCCcc
Confidence 6899999999999999 99998753 35566665543 4678999988887788999999988765
No 221
>PF11798 IMS_HHH: IMS family HHH motif; InterPro: IPR024728 This helix-hairpin-helix motif is found in proteins belonging to the type-Y family of DNA polymerases []. This type of polymerases are thought to be involved in UV protection and mutation [, ]. ; PDB: 3PZP_B 2OH2_B 2W7O_B 3IN5_B 1T94_A 2W7P_B 2W8K_A 2AGQ_A 1RYR_A 3RAX_A ....
Probab=60.78 E-value=4.8 Score=23.61 Aligned_cols=17 Identities=18% Similarity=0.225 Sum_probs=13.6
Q ss_pred cEEEEeCHHHHHHHHHh
Q 026235 129 VRIGVVGAGTASIFEEV 145 (241)
Q Consensus 129 ~~i~aIG~~Ta~~L~~~ 145 (241)
.++.-||++|++.|++.
T Consensus 14 ~~~~GIG~kt~~kL~~~ 30 (32)
T PF11798_consen 14 RKFWGIGKKTAKKLNKL 30 (32)
T ss_dssp GGSTTS-HHHHHHHHCT
T ss_pred HhhCCccHHHHHHHHHc
Confidence 35677999999999998
No 222
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=60.49 E-value=72 Score=24.14 Aligned_cols=76 Identities=20% Similarity=0.101 Sum_probs=45.4
Q ss_pred hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHH----HHHHHHHHHhcCCCCcEEEEeCHH
Q 026235 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA----GSVFLEAWKEAGTPNVRIGVVGAG 137 (241)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~a----V~~f~~~l~~~~~~~~~i~aIG~~ 137 (241)
...++..|+++|+++...... ..+...+.+....++|.|.||+-.. +..+.+.+++. .+++++++-|+.
T Consensus 5 l~~~aa~l~~~g~~v~~~~~~------~~~~~~~~~~~~~~pdiv~~S~~~~~~~~~~~~~~~ik~~-~p~~~iv~GG~~ 77 (127)
T cd02068 5 LAYLAAVLEDAGFIVAEHDVL------SADDIVEDIKELLKPDVVGISLMTSAIYEALELAKIAKEV-LPNVIVVVGGPH 77 (127)
T ss_pred HHHHHHHHHHCCCeeeecCCC------CHHHHHHHHHHhcCCCEEEEeeccccHHHHHHHHHHHHHH-CCCCEEEECCcc
Confidence 356778899999776664432 1233333342326899999987443 33344444443 357888888877
Q ss_pred HHHHHHH
Q 026235 138 TASIFEE 144 (241)
Q Consensus 138 Ta~~L~~ 144 (241)
....-+.
T Consensus 78 ~t~~p~~ 84 (127)
T cd02068 78 ATFFPEE 84 (127)
T ss_pred hhhCHHH
Confidence 6644443
No 223
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=59.97 E-value=1.1e+02 Score=29.76 Aligned_cols=115 Identities=10% Similarity=0.139 Sum_probs=68.9
Q ss_pred CeEEEeCCCCChHHHHHHHHHCCCcEEEeceE------------EEeeCC-CchHHHHHHhcCCCccEEEEeCHHHHHH-
Q 026235 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPLI------------QHAQGP-DTDRLSSVLNADTIFDWIIITSPEAGSV- 116 (241)
Q Consensus 51 ~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~------------~~~~~~-~~~~l~~~l~~l~~~d~IiFTS~~aV~~- 116 (241)
.+|++.....-...+.+.|+++|.++..+.-= .....+ ..++..+.. .+++.|.++.+..+..++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a-~i~~a~~viv~~~~~~~~~ 496 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLA-HLDCARWLLLTIPNGYEAG 496 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhc-CccccCEEEEEcCChHHHH
Confidence 45777777777889999999999876544210 001111 111111111 457889888876654443
Q ss_pred -HHHHHHhcCCCCcEEEEe--CHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhh
Q 026235 117 -FLEAWKEAGTPNVRIGVV--GAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (241)
Q Consensus 117 -f~~~l~~~~~~~~~i~aI--G~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~ 173 (241)
......+. .++.++++. -+...+.+++. |.+..+.|+...++.+.+.+..
T Consensus 497 ~iv~~~~~~-~~~~~iiar~~~~~~~~~l~~~------Gad~vv~p~~~~a~~i~~~l~~ 549 (558)
T PRK10669 497 EIVASAREK-RPDIEIIARAHYDDEVAYITER------GANQVVMGEREIARTMLELLET 549 (558)
T ss_pred HHHHHHHHH-CCCCeEEEEECCHHHHHHHHHc------CCCEEEChHHHHHHHHHHHhcC
Confidence 22223332 245666654 45555667888 9998888887777777776653
No 224
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=59.87 E-value=71 Score=29.91 Aligned_cols=143 Identities=13% Similarity=0.109 Sum_probs=79.9
Q ss_pred ChHHHHHHHHHCCCcEEEeceEEE----------eeCC-CchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHh-cCCCC
Q 026235 61 KNGKLIKALAKHRIDCLELPLIQH----------AQGP-DTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE-AGTPN 128 (241)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~P~~~~----------~~~~-~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~-~~~~~ 128 (241)
+-.++.+.|++.|+++..+|=+.- .+.. ....+++ +...++...-|..++.+ ..+.+.+++ .+.+-
T Consensus 172 D~~eik~lL~~~Gl~v~~l~d~s~~~d~~~~~~~~~~~~ggt~lee-i~~~~~A~lniv~~~~~-~~~a~~Lee~~GiP~ 249 (417)
T cd01966 172 DVEELKDIIEAFGLEPIILPDLSGSLDGHLADDWSPTTTGGTTLED-IRQMGRSAATLAIGESM-RKAAEALEERTGVPY 249 (417)
T ss_pred HHHHHHHHHHHcCCceEEecCcccccCCCCCCCccccCCCCCcHHH-HHhhccCeEEEEECHHH-HHHHHHHHHHHCCCe
Confidence 457899999999999988874320 0000 0111222 33456666766667765 566666664 34432
Q ss_pred cEE-EEeCH-HHHHHHHHhhhccCCCCceeecCCCC--CHHHHHHHhhhC--CCCccEEEEEccCCCchhHHHHHHhCCC
Q 026235 129 VRI-GVVGA-GTASIFEEVIQSSKCSLDVAFSPSKA--TGKILASELPKN--GKKKCTVLYPASAKASNEIEEGLSNRGF 202 (241)
Q Consensus 129 ~~i-~aIG~-~Ta~~L~~~~~~~~~Gi~~~~~p~~~--t~e~L~~~l~~~--~~~~~~iL~~~g~~~~~~L~~~L~~~G~ 202 (241)
+.. .-+|. .|.+.|++.. .++|..+ |+.. .-+.+.+.|... ...|+|+.+..+..-.--+.+.|.+.|.
T Consensus 250 ~~~~~p~G~~~T~~~L~~la--~~~g~~~---~~~i~~er~~~~~~~~d~~~~l~gkrvai~~~~~~~~~l~~~L~ElG~ 324 (417)
T cd01966 250 YVFPSLTGLEAVDALIATLA--KLSGRPV---PEKIRRQRAQLQDAMLDGHFYLGGKRVAIALEPDLLAALSSFLAEMGA 324 (417)
T ss_pred eecCCCcchHHHHHHHHHHH--HHHCCCc---CHHHHHHHHHHHHHHHHHHHHhCCcEEEEEeCHHHHHHHHHHHHHCCC
Confidence 222 22565 5777777651 2236542 3211 112244444331 1347888777543334468899999999
Q ss_pred eeeEeeee
Q 026235 203 EVVRLNTY 210 (241)
Q Consensus 203 ~V~~~~vY 210 (241)
++..+.+.
T Consensus 325 ~~~~~~~~ 332 (417)
T cd01966 325 EIVAAVAT 332 (417)
T ss_pred EEEEEEEC
Confidence 98766553
No 225
>PRK05568 flavodoxin; Provisional
Probab=59.77 E-value=21 Score=27.54 Aligned_cols=36 Identities=17% Similarity=0.205 Sum_probs=25.0
Q ss_pred CCCccEEEEeCHH---------HHHHHHHHHHhcCCCCcEEEEeCH
Q 026235 100 DTIFDWIIITSPE---------AGSVFLEAWKEAGTPNVRIGVVGA 136 (241)
Q Consensus 100 l~~~d~IiFTS~~---------aV~~f~~~l~~~~~~~~~i~aIG~ 136 (241)
+.++|.|+|-||. .++.|++.+... +++.+++++|.
T Consensus 46 ~~~~d~iilgsp~y~~~~~~~~~~~~f~~~~~~~-~~~k~~~~f~t 90 (142)
T PRK05568 46 VKGADVVALGSPAMGDEVLEEGEMEPFVESISSL-VKGKKLVLFGS 90 (142)
T ss_pred HHhCCEEEEECCccCcccccchhHHHHHHHhhhh-hCCCEEEEEEc
Confidence 4689999999983 366677665432 35677777775
No 226
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=59.66 E-value=71 Score=27.89 Aligned_cols=85 Identities=12% Similarity=0.081 Sum_probs=47.6
Q ss_pred CCeEEEeCCCCC-------hHHHHHHHHHCCCcEEEeceEEEeeCC-C--chHHHHHHhcCCCccEEEEeCHHHHHHHHH
Q 026235 50 NPKVVVTRERGK-------NGKLIKALAKHRIDCLELPLIQHAQGP-D--TDRLSSVLNADTIFDWIIITSPEAGSVFLE 119 (241)
Q Consensus 50 g~~VLitR~~~~-------~~~l~~~L~~~G~~v~~~P~~~~~~~~-~--~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~ 119 (241)
.++|++..+... ..-+.+.|+++|..+.. +...... + ...+.+.++....+|+|+.++-......+.
T Consensus 179 ~r~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~ 255 (328)
T PRK11303 179 AESILLLGALPELSVSFEREQGFRQALKDDPREVHY---LYANSFEREAGAQLFEKWLETHPMPDALFTTSYTLLQGVLD 255 (328)
T ss_pred CCeEEEEeCccccccHHHHHHHHHHHHHHcCCCceE---EEeCCCChHHHHHHHHHHHcCCCCCCEEEEcCcHHHHHHHH
Confidence 466776644321 23456678888875421 1111111 1 123444553334688888888766666777
Q ss_pred HHHhcCC---CCcEEEEeCHH
Q 026235 120 AWKEAGT---PNVRIGVVGAG 137 (241)
Q Consensus 120 ~l~~~~~---~~~~i~aIG~~ 137 (241)
.+.+.++ +++.+++.+..
T Consensus 256 al~~~g~~vP~disv~gfd~~ 276 (328)
T PRK11303 256 VLLERPGELPSDLAIATFGDN 276 (328)
T ss_pred HHHHcCCCCCCceEEEEeCCh
Confidence 7777664 36777777654
No 227
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=59.65 E-value=86 Score=29.33 Aligned_cols=138 Identities=12% Similarity=0.097 Sum_probs=80.0
Q ss_pred ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHh-cCCCCcEE-EEeCH-H
Q 026235 61 KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE-AGTPNVRI-GVVGA-G 137 (241)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~-~~~~~~~i-~aIG~-~ 137 (241)
.-.++.+.|++.|+++..++... ...++ +...++...-+..++..-....+.+++ .+.+-+.+ .-+|. .
T Consensus 180 d~~ei~~lL~~~Gi~v~~~~~~~----~~~~e----i~~~~~A~lniv~~~~~g~~~a~~Lee~~GiP~~~~~~P~G~~~ 251 (426)
T cd01972 180 DVDEFKRLLNELGLRVNAIIAGG----CSVEE----LERASEAAANVTLCLDLGYYLGAALEQRFGVPEIKAPQPYGIEA 251 (426)
T ss_pred cHHHHHHHHHHcCCeEEEEeCCC----CCHHH----HHhcccCCEEEEEChhHHHHHHHHHHHHhCCCeEecCCccCHHH
Confidence 34889999999999998653321 12222 335677778777787655666776654 45443333 23665 5
Q ss_pred HHHHHHHhhhccCCCCceeecCCC--CCHHHHHHHhhh--CCCCccEEEEEccCCCchhHHHHHHhCC-CeeeEeee
Q 026235 138 TASIFEEVIQSSKCSLDVAFSPSK--ATGKILASELPK--NGKKKCTVLYPASAKASNEIEEGLSNRG-FEVVRLNT 209 (241)
Q Consensus 138 Ta~~L~~~~~~~~~Gi~~~~~p~~--~t~e~L~~~l~~--~~~~~~~iL~~~g~~~~~~L~~~L~~~G-~~V~~~~v 209 (241)
|.+.|++.. .++|+... .++. ..-+.+.+.|.+ ....|+++++..+....-.+...|.+.| .++..+.+
T Consensus 252 T~~~l~~ia--~~~g~~~~-~e~~i~~e~~~~~~~l~~~~~~l~Gk~~~i~~~~~~~~~~~~~l~elG~~~v~~~~~ 325 (426)
T cd01972 252 TDKWLREIA--KVLGMEAE-AEAVIEREHERVAPEIEELRKALKGKKAIVETGAAYGHLLIAVLRELGFGEVPVVLV 325 (426)
T ss_pred HHHHHHHHH--HHhCCcHH-HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCCccHHHHHHHHHHcCCceEEEEEe
Confidence 666666651 12264321 1100 001122223322 1235788888877766667889999999 77776554
No 228
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=59.63 E-value=58 Score=27.38 Aligned_cols=85 Identities=16% Similarity=0.121 Sum_probs=48.7
Q ss_pred CeEEEeCCCCC-------hHHHHHHHHHC-CCcEEEeceEEEeeC-CC-chHHHHHHhcCCCccEEEEeCHHHHHHHHHH
Q 026235 51 PKVVVTRERGK-------NGKLIKALAKH-RIDCLELPLIQHAQG-PD-TDRLSSVLNADTIFDWIIITSPEAGSVFLEA 120 (241)
Q Consensus 51 ~~VLitR~~~~-------~~~l~~~L~~~-G~~v~~~P~~~~~~~-~~-~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~ 120 (241)
++|++..+... ..-+.+.++++ |.++.. .+..... .+ ...+.+.+.....+|+|++.|-.....+.+.
T Consensus 124 ~~i~~i~~~~~~~~~~~r~~gf~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~d~~a~g~~~~ 201 (273)
T cd06310 124 GKVAVISFVPGSSTTDQREEGFLEGLKEYPGIEIVA--TQYSDSDYAKALDITEDLLTANPDLKGIFGANEGSAVGAARA 201 (273)
T ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHHhCCCcEEEe--cccCCcCHHHHHHHHHHHHHhCCCceEEEecCchhHHHHHHH
Confidence 56666644321 23355677777 665543 1111100 01 1233444433346899999888888888888
Q ss_pred HHhcCCC-CcEEEEeCHH
Q 026235 121 WKEAGTP-NVRIGVVGAG 137 (241)
Q Consensus 121 l~~~~~~-~~~i~aIG~~ 137 (241)
+.+.+.+ ++.+++.+..
T Consensus 202 l~~~g~~~di~vig~d~~ 219 (273)
T cd06310 202 VRQAGKAGKVKVVGFDAS 219 (273)
T ss_pred HHhcCCCCCeEEEEeCCC
Confidence 8877764 6777777754
No 229
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs. Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate
Probab=59.57 E-value=1.1e+02 Score=26.02 Aligned_cols=162 Identities=9% Similarity=0.032 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCcEEEeceEEEe--eCCCchHHHHHHhcCCCccEEEEe-CHHHHHHHHHHHHhcCCCCcEEEEeCHHHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHA--QGPDTDRLSSVLNADTIFDWIIIT-SPEAGSVFLEAWKEAGTPNVRIGVVGAGTA 139 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~--~~~~~~~l~~~l~~l~~~d~IiFT-S~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta 139 (241)
..+.+.++++|+++...+...-. .......+.+.+ .-.++|+||++ +........+.+.+ .+.+++.++..+.
T Consensus 20 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l-~~~~vDgiIv~~~~~~~~~~~~~l~~---~~~p~V~i~~~~~ 95 (280)
T cd06303 20 ASFTARLEELNIPYELTQFSSRPGIDHRLQSQQLNEA-LQSKPDYLIFTLDSLRHRKLIERVLA---SGKTKIILQNITT 95 (280)
T ss_pred HHHHHHHHHcCCcEEEEEeccCcccCHHHHHHHHHHH-HHcCCCEEEEcCCchhhHHHHHHHHh---CCCCeEEEeCCCC
Q ss_pred ---HHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEccCC------CchhHHHHHHhC-CCeeeEeee
Q 026235 140 ---SIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAK------ASNEIEEGLSNR-GFEVVRLNT 209 (241)
Q Consensus 140 ---~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~~~~~~iL~~~g~~------~~~~L~~~L~~~-G~~V~~~~v 209 (241)
...... ++.....-....++.+++.|.+.....+++.++.+.. ...-+.+.|+++ |.++ ...
T Consensus 96 ~~~~~~~~~------~~~~V~~d~~~~g~~~~~~L~~~~~g~~~i~~l~~~~~~~~~~R~~gf~~al~~~~~~~~--~~~ 167 (280)
T cd06303 96 PVKAWLKHQ------PLLYVGFDHAAGARLLADYFIKRYPNHARYAMLYFSPGYISTARGDTFIDCVHARNNWTL--TSE 167 (280)
T ss_pred CccccccCC------CceEeCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCcchhHHHHHHHHHHHhCCCceE--EEe
Q ss_pred eeeecCCCChHHHHHHc----CCCCEEEEEC
Q 026235 210 YTTEPVHHVDQTVLKQA----LSIPVVAVAS 236 (241)
Q Consensus 210 Y~~~~~~~~~~~~~~~l----~~id~IvFtS 236 (241)
+..........+....+ .++++|+.++
T Consensus 168 ~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~n 198 (280)
T cd06303 168 FYTDATRQKAYQATSDILSNNPDVDFIYACS 198 (280)
T ss_pred ecCCCCHHHHHHHHHHHHHhCCCCcEEEECC
No 230
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=59.50 E-value=25 Score=28.94 Aligned_cols=64 Identities=17% Similarity=0.023 Sum_probs=40.4
Q ss_pred hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhc--------CCCCcEEEE
Q 026235 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA--------GTPNVRIGV 133 (241)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~--------~~~~~~i~a 133 (241)
.+.++..|++.|++|...|+=+.+. + ++++||.||+-++-=-.+|.+.+.+. .-...-++|
T Consensus 18 A~~iA~~L~e~g~qvdi~dl~~~~~----------~-~l~~ydavVIgAsI~~~h~~~~~~~Fv~k~~e~L~~kP~A~f~ 86 (175)
T COG4635 18 AEYIASHLRESGIQVDIQDLHAVEE----------P-ALEDYDAVVIGASIRYGHFHEAVQSFVKKHAEALSTKPSAFFS 86 (175)
T ss_pred HHHHHHHhhhcCCeeeeeehhhhhc----------c-ChhhCceEEEecchhhhhhHHHHHHHHHHHHHHHhcCCceEEE
Confidence 3556667888899998776654432 2 46899999999885555554443321 112356677
Q ss_pred eCH
Q 026235 134 VGA 136 (241)
Q Consensus 134 IG~ 136 (241)
++.
T Consensus 87 vnl 89 (175)
T COG4635 87 VNL 89 (175)
T ss_pred eeh
Confidence 764
No 231
>PLN03139 formate dehydrogenase; Provisional
Probab=59.49 E-value=86 Score=29.25 Aligned_cols=157 Identities=11% Similarity=0.023 Sum_probs=81.1
Q ss_pred hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHH--HHHHHHHHHHhcCCCCcEEEE---eCH
Q 026235 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGV---VGA 136 (241)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~--aV~~f~~~l~~~~~~~~~i~a---IG~ 136 (241)
.-.+.+.|++.|.+++..+- . . .+.+++.+ .+.++|.+|.+... -+. .+.+.. .+++++++ +|-
T Consensus 64 ~~~~~~~l~~~g~~~v~~~~--~-~-~~~~~~~~---~l~dadili~~~~~~~~~~--~e~l~~--ap~LK~I~~~g~G~ 132 (386)
T PLN03139 64 ALGIRDWLESQGHQYIVTDD--K-E-GPDCELEK---HIPDLHVLITTPFHPAYVT--AERIKK--AKNLELLLTAGIGS 132 (386)
T ss_pred CccHHHHHHhcCCeEEEeCC--C-C-CCHHHHHH---HhCCCeEEEEcCccCCCCC--HHHHhh--CCCccEEEECCccc
Confidence 44577889999988876541 1 1 12233333 45778877653211 111 112221 23444432 332
Q ss_pred H--HHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhh-------h-----------------------CCCCccEEEEE
Q 026235 137 G--TASIFEEVIQSSKCSLDVAFSPSKATGKILASELP-------K-----------------------NGKKKCTVLYP 184 (241)
Q Consensus 137 ~--Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~-------~-----------------------~~~~~~~iL~~ 184 (241)
- -.+++.+. |+.+.-.| ..+++.++|... + ....|+++.++
T Consensus 133 D~iDl~aa~~~------gI~V~n~~-g~na~sVAE~al~liL~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIV 205 (386)
T PLN03139 133 DHIDLPAAAAA------GLTVAEVT-GSNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNVAGIAYRAYDLEGKTVGTV 205 (386)
T ss_pred cccCHHHHHHC------CeEEEECC-CcCcHHHHHHHHHHHHHHHcCcHHHHHHHHhCCCccccccCCCcCCCCCEEEEE
Confidence 2 22456677 88875554 344555554421 0 01245677766
Q ss_pred ccCCCchhHHHHHHhCCCeeeEeeeeeeecCCC---------ChHHHHHHcCCCCEEEEECCcc
Q 026235 185 ASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHH---------VDQTVLKQALSIPVVAVASPSA 239 (241)
Q Consensus 185 ~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~---------~~~~~~~~l~~id~IvFtSps~ 239 (241)
--..-...+.+.|+..|.+|. +|.+..... ....+.+.+...|+|+...|.+
T Consensus 206 G~G~IG~~vA~~L~afG~~V~---~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt 266 (386)
T PLN03139 206 GAGRIGRLLLQRLKPFNCNLL---YHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLT 266 (386)
T ss_pred eecHHHHHHHHHHHHCCCEEE---EECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCC
Confidence 544444568889988887764 454432110 0012233347899999988753
No 232
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=59.47 E-value=4.5 Score=32.34 Aligned_cols=115 Identities=10% Similarity=0.052 Sum_probs=67.0
Q ss_pred CCCCeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEe--eCC---CchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHH
Q 026235 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHA--QGP---DTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWK 122 (241)
Q Consensus 48 l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~--~~~---~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~ 122 (241)
..|++|.+..-- .++.+.|++.+.++..+..-.-. ... ........ +...|.++.|...-+..-++.+-
T Consensus 9 ~~~~~V~~VG~f---~P~~~~l~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~---l~~aD~viiTGsTlvN~Ti~~iL 82 (147)
T PF04016_consen 9 GPGDKVGMVGYF---QPLVEKLKERGAEVRVFDLNPDNIGEEPGDVPDEDAEEI---LPWADVVIITGSTLVNGTIDDIL 82 (147)
T ss_dssp TTTSEEEEES-----HCCHHHHCCCCSEEEEEESSGGG--SSCT-EEGGGHHHH---GGG-SEEEEECHHCCTTTHHHHH
T ss_pred cCCCEEEEEcCc---HHHHHHHhcCCCCEEEEECCCCCCCCCCCcCCHHHHHHH---HccCCEEEEEeeeeecCCHHHHH
Confidence 357888888743 12566777677766654332200 011 11223333 47899999999988776666554
Q ss_pred hcCCCCcEEEEeCHHHHHHH---HHhhhccCCCCceeecCCCCCHHHHHHHhhhC
Q 026235 123 EAGTPNVRIGVVGAGTASIF---EEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (241)
Q Consensus 123 ~~~~~~~~i~aIG~~Ta~~L---~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~ 174 (241)
+...+...++.+||.|.-.- .++ |++.......-+.+.+++.+.+-
T Consensus 83 ~~~~~~~~vil~GpS~~~~P~~l~~~------Gv~~v~g~~v~d~~~~~~~i~~G 131 (147)
T PF04016_consen 83 ELARNAREVILYGPSAPLHPEALFDY------GVTYVGGSRVVDPEKVLRAISEG 131 (147)
T ss_dssp HHTTTSSEEEEESCCGGS-GGGGCCT------T-SEEEEEEES-HHHHHHHHCTT
T ss_pred HhCccCCeEEEEecCchhhHHHHHhC------CCCEEEEEEEeCHHHHHHHHHcC
Confidence 44335788999999875433 344 77653332346888999888753
No 233
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=59.36 E-value=1e+02 Score=28.30 Aligned_cols=139 Identities=14% Similarity=0.088 Sum_probs=72.0
Q ss_pred ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHh-cCCCCcEEEEeCH-HH
Q 026235 61 KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE-AGTPNVRIGVVGA-GT 138 (241)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~-~~~~~~~i~aIG~-~T 138 (241)
...++.+.|++.|+++..+..- ....++ +...+....-+..++..-....+.+++ .+.+-+...-+|. .|
T Consensus 174 d~~el~~lL~~~Gi~~~~~~~~----~~~~~~----i~~~~~A~~niv~~~~~~~~~a~~L~~r~GiP~~~~~p~G~~~t 245 (406)
T cd01967 174 DAWVIKPLLEELGIRVNATFTG----DGTVDE----LRRAHRAKLNLVHCSRSMNYLAREMEERYGIPYMEVNFYGFEDT 245 (406)
T ss_pred hHHHHHHHHHHcCCEEEEEeCC----CCCHHH----HhhCccCCEEEEEChHHHHHHHHHHHHhhCCCEEEecCCcHHHH
Confidence 4588999999999999853211 112233 334566776666555333444555543 3433222222453 45
Q ss_pred HHHHHHhhhccCCCCceeecCC--CCCHHHHHHHhhhC--CCCccEEEEEccCCCchhHHHHHHhCCCeeeEeeee
Q 026235 139 ASIFEEVIQSSKCSLDVAFSPS--KATGKILASELPKN--GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTY 210 (241)
Q Consensus 139 a~~L~~~~~~~~~Gi~~~~~p~--~~t~e~L~~~l~~~--~~~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~~~vY 210 (241)
.+.++... ..+|.... .++ ..--+.+.+.+... ...++++.+..+..-...+...|.+.|.+|..+..+
T Consensus 246 ~~~l~~l~--~~lg~~~~-~~~~i~~~~~~~~~~l~~~~~~l~gkrv~I~~~~~~~~~~~~~l~elG~~v~~~~~~ 318 (406)
T cd01967 246 SESLRKIA--KFFGDEEK-AEEVIAEEEARIKPELEKYRERLKGKKVIIYTGGARSWHVIAALRELGMEVVAAGYE 318 (406)
T ss_pred HHHHHHHH--HHhCCHHH-HHHHHHHHHHHHHHHHHHHHHhccCCEEEEEccCcchHHHHHHHHHcCCEEEEEEEe
Confidence 55566541 11254110 000 00111122223221 235788887766555556668999999998666554
No 234
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=59.34 E-value=78 Score=29.14 Aligned_cols=47 Identities=15% Similarity=0.000 Sum_probs=34.6
Q ss_pred CCHHHHHHHhhhCC--CCccEEEEE-ccCCCchhHHHHHHhCCCeeeEee
Q 026235 162 ATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEEGLSNRGFEVVRLN 208 (241)
Q Consensus 162 ~t~e~L~~~l~~~~--~~~~~iL~~-~g~~~~~~L~~~L~~~G~~V~~~~ 208 (241)
-|+.+.++.|..+. ..|++++++ ||+....-|...|.++|++|.-|.
T Consensus 196 CTp~avi~LL~~~~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicH 245 (345)
T PLN02897 196 CTPKGCVELLIRSGVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVH 245 (345)
T ss_pred CCHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEc
Confidence 58899998887653 457776555 555556668889999999996554
No 235
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=59.28 E-value=1.4e+02 Score=28.73 Aligned_cols=74 Identities=18% Similarity=0.196 Sum_probs=46.5
Q ss_pred CeEEEeCCCCChHHHHHHHHHC--CCcEEEece------EEE--------e--eCCCchHHHHHHhcCCCccEEEEeCHH
Q 026235 51 PKVVVTRERGKNGKLIKALAKH--RIDCLELPL------IQH--------A--QGPDTDRLSSVLNADTIFDWIIITSPE 112 (241)
Q Consensus 51 ~~VLitR~~~~~~~l~~~L~~~--G~~v~~~P~------~~~--------~--~~~~~~~l~~~l~~l~~~d~IiFTS~~ 112 (241)
|+||++........+...|++. |.+++.+|- ..+ . ...|.+.+.+..+ ...+|+||..+-.
T Consensus 1 mkVLviG~Ggrehal~~~l~~s~~g~~v~~~~g~~Npg~~~~~~~~~~~~~~~~~~d~~~l~~~a~-~~~id~Vi~g~E~ 79 (486)
T PRK05784 1 MKVLLVGDGAREHALAEALEKSTKGYKVYALSSYLNPGINSVVKATGGEYFIGNINSPEEVKKVAK-EVNPDLVVIGPEE 79 (486)
T ss_pred CEEEEECCchhHHHHHHHHHhCCCCCEEEEEECCCChhheeecccccCceEecCCCCHHHHHHHHH-HhCCCEEEECCch
Confidence 5899999988888899999887 889887764 111 1 1123445555553 3578988875544
Q ss_pred HH-HHHHHHHHhcC
Q 026235 113 AG-SVFLEAWKEAG 125 (241)
Q Consensus 113 aV-~~f~~~l~~~~ 125 (241)
.. ....+.+...+
T Consensus 80 ~l~~glad~l~~~G 93 (486)
T PRK05784 80 PLFAGVADVLREEG 93 (486)
T ss_pred HHHHHHHHHHHhCC
Confidence 32 24445555443
No 236
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=59.22 E-value=1.5e+02 Score=27.53 Aligned_cols=139 Identities=12% Similarity=0.068 Sum_probs=75.7
Q ss_pred ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHh-cCCCCcEEEEeCHH-H
Q 026235 61 KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE-AGTPNVRIGVVGAG-T 138 (241)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~-~~~~~~~i~aIG~~-T 138 (241)
+-+++.+.|++.|+++...- ......++ +...++...-+..++..-..+.+.+++ .+.+-..+-.+|.. |
T Consensus 176 d~~ei~~lL~~~Gl~v~~~~----~~~~t~~e----i~~~~~A~lnlv~~~~~~~~~A~~L~er~GiP~~~~~~~G~~~t 247 (415)
T cd01977 176 DTEVLQKYFERMGIQVLSTF----TGNGTYDD----LRWMHRAKLNVVNCARSAGYIANELKKRYGIPRLDVDGFGFEYC 247 (415)
T ss_pred cHHHHHHHHHHcCCeEEEEE----CCCCCHHH----HHhcccCCEEEEEchhHHHHHHHHHHHHhCCCeEEeccCCHHHH
Confidence 34679999999999996321 11112232 335677777666665544566666665 35554433347755 5
Q ss_pred HHHHHHhhhccCCCCceee---cCCCC-CHHHHHHHhhhCCCCccEEEEEccCCCchhHHHHHH-hCCCeeeEeeee
Q 026235 139 ASIFEEVIQSSKCSLDVAF---SPSKA-TGKILASELPKNGKKKCTVLYPASAKASNEIEEGLS-NRGFEVVRLNTY 210 (241)
Q Consensus 139 a~~L~~~~~~~~~Gi~~~~---~p~~~-t~e~L~~~l~~~~~~~~~iL~~~g~~~~~~L~~~L~-~~G~~V~~~~vY 210 (241)
.+.|++. .+++|.+.+. +++.. ....-++..... ..|+++.+..+....-.+...|. +.|.++..+..+
T Consensus 248 ~~~l~~l--a~~~g~~~~~e~~i~~~~~~~r~~l~~~~~~-l~Gk~vai~~~~~~~~~la~~l~~elG~~v~~i~~~ 321 (415)
T cd01977 248 AESLRKI--GAFFGIEDRAEAVIAEEMAKWKPELDWYKER-LKGKKVCIWTGGPKLWHWTKVIEDELGMQVVAMSSK 321 (415)
T ss_pred HHHHHHH--HHHhCcchhHHHHHHHHHHHHHHHHHHHHHH-cCCCEEEEECCCchHHHHHHHHHHhcCCEEEEEEEE
Confidence 5666654 1223544211 11100 011112212122 35789988755544456888886 899999876554
No 237
>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.
Probab=59.06 E-value=1.1e+02 Score=25.74 Aligned_cols=127 Identities=16% Similarity=0.021 Sum_probs=60.6
Q ss_pred CCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHHHHHHhhhccCC-CCceeecCCCCCHHHHHHHhhhCCCCcc
Q 026235 101 TIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKC-SLDVAFSPSKATGKILASELPKNGKKKC 179 (241)
Q Consensus 101 ~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~L~~~~~~~~~-Gi~~~~~p~~~t~e~L~~~l~~~~~~~~ 179 (241)
..+|+||..+..+.... . .. ..+++++.+|.......... -+... +............+.+++.+.+.....+
T Consensus 59 ~~vd~iI~~~~~~~~~~-~-~~---~~~iPvV~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~ 132 (281)
T cd06325 59 DKPDLIVAIATPAAQAA-A-NA---TKDIPIVFTAVTDPVGAGLV-KSLEKPGGNVTGVSDLVPVETQLELLKKLLPDAK 132 (281)
T ss_pred cCCCEEEEcCcHHHHHH-H-Hc---CCCCCEEEEecCCccccccc-cccccCCCceeCeecccchHHHHHHHHHHCCCCc
Confidence 57999998765433222 1 21 24678888873211110000 00000 1111111233445667777776533457
Q ss_pred EEEEEccCCC------chhHHHHHHhCCCeeeEeeeeeeecCCCChHHHHHH-cCCCCEEEEECC
Q 026235 180 TVLYPASAKA------SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQ-ALSIPVVAVASP 237 (241)
Q Consensus 180 ~iL~~~g~~~------~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~-l~~id~IvFtSp 237 (241)
++.++.+... ...+.+.+++.|.++.....+ ......+..+. +..+|+|+..+-
T Consensus 133 ~i~~l~~~~~~~~~~r~~g~~~~~~~~g~~~~~~~~~----~~~~~~~~~~~~~~~~dai~~~~d 193 (281)
T cd06325 133 TVGVLYNPSEANSVVQVKELKKAAAKLGIEVVEATVS----SSNDVQQAAQSLAGKVDAIYVPTD 193 (281)
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHhCCCEEEEEecC----CHHHHHHHHHHhcccCCEEEEcCc
Confidence 8888754321 145667788888776543211 11101122222 355788877643
No 238
>PRK09701 D-allose transporter subunit; Provisional
Probab=58.88 E-value=43 Score=29.40 Aligned_cols=130 Identities=7% Similarity=0.012 Sum_probs=64.4
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCc----hHHHHHHhcCCCccEEEEeCHHH--HHHHHHHHHhcCCCCcEEEEeCH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDT----DRLSSVLNADTIFDWIIITSPEA--GSVFLEAWKEAGTPNVRIGVVGA 136 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~----~~l~~~l~~l~~~d~IiFTS~~a--V~~f~~~l~~~~~~~~~i~aIG~ 136 (241)
..+.+.++++|+++..+..- ...+. +.++..+ ...+|.||+..... .......+.+ .+++++++|.
T Consensus 44 ~gi~~~a~~~g~~v~~~~~~---~~~~~~~~~~~i~~l~--~~~vDgiIi~~~~~~~~~~~l~~~~~---~giPvV~~~~ 115 (311)
T PRK09701 44 KGIEDEAKTLGVSVDIFASP---SEGDFQSQLQLFEDLS--NKNYKGIAFAPLSSVNLVMPVARAWK---KGIYLVNLDE 115 (311)
T ss_pred HHHHHHHHHcCCeEEEecCC---CCCCHHHHHHHHHHHH--HcCCCEEEEeCCChHHHHHHHHHHHH---CCCcEEEeCC
Confidence 44556777889888765211 11121 1233332 25799999976432 2222222322 4588999986
Q ss_pred HHHH-HHHHhhhccCCCCceeecCCCC-CHHHHHHHhhhC-CCCccEEEEEccCCCc-------hhHHHHHHhCC-Cee
Q 026235 137 GTAS-IFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKN-GKKKCTVLYPASAKAS-------NEIEEGLSNRG-FEV 204 (241)
Q Consensus 137 ~Ta~-~L~~~~~~~~~Gi~~~~~p~~~-t~e~L~~~l~~~-~~~~~~iL~~~g~~~~-------~~L~~~L~~~G-~~V 204 (241)
.... .+... -.+....+..+.+ ..+..++.|.+. ...+++++++.|.... .-+.+.|+++| +++
T Consensus 116 ~~~~~~~~~~----~~~~~~~V~~d~~~~g~~aa~~L~~~~g~~~~~i~~l~g~~~~~~~~~R~~Gf~~al~~~~~~~~ 190 (311)
T PRK09701 116 KIDMDNLKKA----GGNVEAFVTTDNVAVGAKGASFIIDKLGAEGGEVAIIEGKAGNASGEARRNGATEAFKKASQIKL 190 (311)
T ss_pred CCCccccccc----CCceEEEeccchHHHHHHHHHHHHHHhCCCCCEEEEEECCCCCccHHHHHHHHHHHHHhCCCcEE
Confidence 4321 11000 0001111222322 345566666554 3224688888775432 34567787776 543
No 239
>PRK10339 DNA-binding transcriptional repressor EbgR; Provisional
Probab=58.82 E-value=1.3e+02 Score=26.40 Aligned_cols=145 Identities=11% Similarity=-0.053 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHHHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~L 142 (241)
..+.+.++++|+.+.....-.... ....+|.||+++ ..-......+.+.+ .+++.++.....
T Consensus 87 ~~i~~~~~~~g~~~~~~~~~~~~~------------~~~~vDgiI~~~-~~~~~~~~~l~~~~---~pvV~~~~~~~~-- 148 (327)
T PRK10339 87 HGIETQCEKLGIELTNCYEHSGLP------------DIKNVTGILIVG-KPTPALRAAASALT---DNICFIDFHEPG-- 148 (327)
T ss_pred HHHHHHHHHCCCEEEEeecccccc------------ccccCCEEEEeC-CCCHHHHHHHHhcC---CCEEEEeCCCCC--
Q ss_pred HHhhhccCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEccCCC-------chhHHHHHHhCCCeeeEeeeeeeecC
Q 026235 143 EEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEPV 215 (241)
Q Consensus 143 ~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~~~~~~iL~~~g~~~-------~~~L~~~L~~~G~~V~~~~vY~~~~~ 215 (241)
. ++.....-....+..+++.|.+... +++.++.+... ..-+.+.++.+|. +....+|.....
T Consensus 149 --~------~~~~V~~D~~~~~~~a~~~l~~~G~--~~i~~i~~~~~~~~~~~R~~gf~~~~~~~g~-~~~~~~~~~~~~ 217 (327)
T PRK10339 149 --S------GYDAVDIDLARISKEIIDFYINQGV--NRIGFIGGEDEPGKADIREVAFAEYGRLKQV-VREEDIWRGGFS 217 (327)
T ss_pred --C------CCCEEEECHHHHHHHHHHHHHHCCC--CeEEEeCCccccchhhHHHHHHHHHHHHcCC-CChhheeecCcC
Q ss_pred CCChHHHHHHc----CCCCEEEEEC
Q 026235 216 HHVDQTVLKQA----LSIPVVAVAS 236 (241)
Q Consensus 216 ~~~~~~~~~~l----~~id~IvFtS 236 (241)
.....+..+.+ ..+++|+.++
T Consensus 218 ~~~~~~~~~~~l~~~~~~~ai~~~~ 242 (327)
T PRK10339 218 SSSGYELAKQMLAREDYPKALFVAS 242 (327)
T ss_pred hhHHHHHHHHHHhCCCCCCEEEECC
No 240
>PRK13556 azoreductase; Provisional
Probab=58.79 E-value=33 Score=28.64 Aligned_cols=15 Identities=33% Similarity=0.244 Sum_probs=11.6
Q ss_pred HHcCCCCEEEEECCc
Q 026235 224 KQALSIPVVAVASPS 238 (241)
Q Consensus 224 ~~l~~id~IvFtSps 238 (241)
+++...|.|||.+|.
T Consensus 85 ~~l~~AD~iVi~~P~ 99 (208)
T PRK13556 85 NQFLEADKVVFAFPL 99 (208)
T ss_pred HHHHHCCEEEEeccc
Confidence 334688999999984
No 241
>PRK06487 glycerate dehydrogenase; Provisional
Probab=58.76 E-value=1.3e+02 Score=26.94 Aligned_cols=172 Identities=8% Similarity=-0.089 Sum_probs=0.0
Q ss_pred CeEEEe--CCCCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCCCC
Q 026235 51 PKVVVT--RERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPN 128 (241)
Q Consensus 51 ~~VLit--R~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~ 128 (241)
|+|+++ ..........+.|++...++...+ ..+.+++.+.+ .++|.++..+..--+.+++.+++.++=.
T Consensus 1 m~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------~~~~~~~~~~~---~~~d~~i~~~~~~~~~~l~~~~~Lk~I~ 71 (317)
T PRK06487 1 MRAVFLDHDSLDLGDLDLSPLEQAFDELQLHD------ATTPEQVAERL---RGAQVAISNKVALDAAALAAAPQLKLIL 71 (317)
T ss_pred CeEEEEccccCCccccchhHHHhhCCeEEEec------CCCHHHHHHHh---CCCeEEEEeCCCCCHHHHhhCCCCeEEE
Q ss_pred cEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCC---------------------------------
Q 026235 129 VRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--------------------------------- 175 (241)
Q Consensus 129 ~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~--------------------------------- 175 (241)
..-+-+-.--.+++.+. |+.+.-.| ...++.++|......
T Consensus 72 ~~~~G~d~id~~~~~~~------gI~v~n~~-g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~ 144 (317)
T PRK06487 72 VAATGTNNVDLAAARER------GITVCNCQ-GYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIV 144 (317)
T ss_pred EcCccccccCHHHHHHC------CCEEEeCC-CCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCccc
Q ss_pred -CCccEEEEEccCCCchhHHHHHHhCCCeeeEeeeeeeecCCCChHHHHHHcCCCCEEEEECCcc
Q 026235 176 -KKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSA 239 (241)
Q Consensus 176 -~~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~l~~id~IvFtSps~ 239 (241)
..|+++.++.-......+.+.|+.-|.+|..+.-|......... .+.+.+...|+|+..-|.+
T Consensus 145 ~l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~~~~~~~-~l~ell~~sDiv~l~lPlt 208 (317)
T PRK06487 145 ELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRPARPDRL-PLDELLPQVDALTLHCPLT 208 (317)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCccccccc-CHHHHHHhCCEEEECCCCC
No 242
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=58.37 E-value=72 Score=25.86 Aligned_cols=53 Identities=13% Similarity=0.142 Sum_probs=30.7
Q ss_pred EEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHH
Q 026235 54 VVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA 113 (241)
Q Consensus 54 LitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~a 113 (241)
|.++.......+.+.|++.|.....+.+++...... ...+..+|.||+|....
T Consensus 5 l~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~-------~~~~~~~dgvil~Gg~~ 57 (188)
T cd01741 5 LQHDTPEGPGLFEDLLREAGAETIEIDVVDVYAGEL-------LPDLDDYDGLVILGGPM 57 (188)
T ss_pred EECCCCCCcchHHHHHHhcCCCCceEEEEecCCCCC-------CCCcccCCEEEECCCCc
Confidence 334444446889999999995222223333221111 12467899999997643
No 243
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=58.31 E-value=1.6e+02 Score=27.47 Aligned_cols=144 Identities=23% Similarity=0.181 Sum_probs=79.5
Q ss_pred CeEEEeCCCC--ChHHHHHHHHHCCCcEEE-eceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCCC
Q 026235 51 PKVVVTRERG--KNGKLIKALAKHRIDCLE-LPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTP 127 (241)
Q Consensus 51 ~~VLitR~~~--~~~~l~~~L~~~G~~v~~-~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~ 127 (241)
++|.+...-. .-+++.+.|++.|+++.. +| ....+ .+..++...+-+-.++..-.. .+.+++.+.+
T Consensus 160 ~~vniiG~~~~~d~~ei~~lL~~~Gl~~~~~l~------~~~~~----el~~~~~A~~~i~~~~~~~~~-a~~Le~~GvP 228 (416)
T cd01980 160 PSLALLGEMFPADPVAIGSVLERMGLAAVPVVP------TREWR----ELYAAGDAAAVAALHPFYTAT-IRELEEAGRP 228 (416)
T ss_pred CeEEEEccCCCCCHHHHHHHHHHcCCceeeEeC------CCCHH----HHhhcccCcEEEEeChhHHHH-HHHHHHcCCc
Confidence 4566554222 336899999999999975 33 12222 234567778888888876644 7777654443
Q ss_pred CcEEEEeCH-HHHHHHHHhhhccCCCCceeecCCCC--CHHHHHHHh-hhCC-CCccEEEEEccCCCchhHHHHHHhCCC
Q 026235 128 NVRIGVVGA-GTASIFEEVIQSSKCSLDVAFSPSKA--TGKILASEL-PKNG-KKKCTVLYPASAKASNEIEEGLSNRGF 202 (241)
Q Consensus 128 ~~~i~aIG~-~Ta~~L~~~~~~~~~Gi~~~~~p~~~--t~e~L~~~l-~~~~-~~~~~iL~~~g~~~~~~L~~~L~~~G~ 202 (241)
-....=+|. .|.+.+++. ..++|..+.-. +.. .-+.+++.+ ..+. ..+ |+.+..+...--.+...|.+.|.
T Consensus 229 ~~~~~piG~~~td~~l~~l--a~~~g~~~~~~-e~~~~~e~~~~~~~ld~~~~l~g-kv~v~g~~~~~~~la~~L~elGm 304 (416)
T cd01980 229 IVSGAPVGADGTAAWLEAV--GEALGLDMDQV-RKVANEEKAAAKGAIRAFSPIKG-RVLVSGYEGNELLVARLLIESGA 304 (416)
T ss_pred eecCCCcCchHHHHHHHHH--HHHhCcCchhH-HHHHHHHHHHHHHHHhhHHhhCc-eEEEECCCchhHHHHHHHHHcCC
Confidence 221123554 455666654 22236543100 111 111222222 1111 234 66555455445569999999999
Q ss_pred eeeEeee
Q 026235 203 EVVRLNT 209 (241)
Q Consensus 203 ~V~~~~v 209 (241)
+|..+..
T Consensus 305 evv~~~t 311 (416)
T cd01980 305 EVPYVST 311 (416)
T ss_pred EEEEEec
Confidence 9988877
No 244
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=58.30 E-value=1.1e+02 Score=25.54 Aligned_cols=154 Identities=10% Similarity=0.063 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcC--CCccEEEEeC--HHHHHHHHHHHHhcCCCCcEEEEeCHHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD--TIFDWIIITS--PEAGSVFLEAWKEAGTPNVRIGVVGAGT 138 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l--~~~d~IiFTS--~~aV~~f~~~l~~~~~~~~~i~aIG~~T 138 (241)
..+.+.++++|+++.. .....+.+...+.++.+ ..+|+||+++ .......++.+.+ .+++++.++..
T Consensus 19 ~~i~~~~~~~g~~~~i-----~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~~~~---~~ipvV~~~~~- 89 (267)
T cd06322 19 NAMKEEAKKQKVNLIV-----SIANQDLNKQLSDVEDFITKKVDAIVLSPVDSKGIRAAIAKAKK---AGIPVITVDIA- 89 (267)
T ss_pred HHHHHHHHhcCCEEEE-----ecCCCCHHHHHHHHHHHHHcCCCEEEEcCCChhhhHHHHHHHHH---CCCCEEEEccc-
Q ss_pred HHHHHHhhhccCCCCceeecCCCCCH-HHHHHHhhhCCCCccEEEEEccCCCc------hhHHHHHHhC-CCeeeEeeee
Q 026235 139 ASIFEEVIQSSKCSLDVAFSPSKATG-KILASELPKNGKKKCTVLYPASAKAS------NEIEEGLSNR-GFEVVRLNTY 210 (241)
Q Consensus 139 a~~L~~~~~~~~~Gi~~~~~p~~~t~-e~L~~~l~~~~~~~~~iL~~~g~~~~------~~L~~~L~~~-G~~V~~~~vY 210 (241)
.... +....+..+.+.. ..+++.+.+.....+++.++.+.... .-+.+.+++. |.++ ...+
T Consensus 90 ---~~~~------~~~~~v~~d~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~R~~gf~~~~~~~~~~~~--~~~~ 158 (267)
T cd06322 90 ---AEGV------AVVSHVATDNYAGGVLAGELAAKVLNGKGQVAIIDYPTVQSVVDRVRGFKEALADYPNIKI--VAVQ 158 (267)
T ss_pred ---CCCC------ceEEEEecChHHHHHHHHHHHHHHhCCCceEEEEecCCCccHHHHHHHHHHHHHhCCCcEE--EEec
Q ss_pred eeecCCCChHHHHHHc---CCCCEEEEEC
Q 026235 211 TTEPVHHVDQTVLKQA---LSIPVVAVAS 236 (241)
Q Consensus 211 ~~~~~~~~~~~~~~~l---~~id~IvFtS 236 (241)
.....+.....+.+.+ .++++|+-.+
T Consensus 159 ~~~~~~~~~~~~~~~l~~~~~~~ai~~~~ 187 (267)
T cd06322 159 PGITRAEALTAAQNILQANPDLDGIFAFG 187 (267)
T ss_pred CCCChHHHHHHHHHHHHhCCCCCEEEEcC
No 245
>PRK06398 aldose dehydrogenase; Validated
Probab=58.18 E-value=65 Score=27.34 Aligned_cols=64 Identities=6% Similarity=0.136 Sum_probs=41.0
Q ss_pred CCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEece-------EEEee--CCCchHHHHHH----hcCCCccEEEEeC
Q 026235 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPL-------IQHAQ--GPDTDRLSSVL----NADTIFDWIIITS 110 (241)
Q Consensus 47 ~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~-------~~~~~--~~~~~~l~~~l----~~l~~~d~IiFTS 110 (241)
++.||++|||..... ...+++.|.++|+++...-- +.... +.+.+.+.+.+ +..+.+|.||...
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~id~li~~A 80 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEPSYNDVDYFKVDVSNKEQVIKGIDYVISKYGRIDILVNNA 80 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCccccCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 477899999988653 67899999999998875321 12222 22333444433 2346789888753
No 246
>PLN02409 serine--glyoxylate aminotransaminase
Probab=58.06 E-value=1e+02 Score=28.41 Aligned_cols=72 Identities=13% Similarity=-0.029 Sum_probs=38.5
Q ss_pred HHHHHHhhhCCCCccEEEEEccCCCchhHHHHHHhCCCeeeEeeeeeeecCCCChHHHHHHcC-----CCCEEEEECCc
Q 026235 165 KILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQAL-----SIPVVAVASPS 238 (241)
Q Consensus 165 e~L~~~l~~~~~~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~l~-----~id~IvFtSps 238 (241)
.++...+.....+|.+|++.....-.....+.++..|+++..+.+-.... ...+++.+.+. +..+|++++++
T Consensus 71 ~a~~~a~~~~~~~Gd~Vlv~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~--~~~~~l~~~l~~~~~~~~k~v~~~~~~ 147 (401)
T PLN02409 71 GAWESALTNTLSPGDKVVSFRIGQFSLLWIDQMQRLNFDVDVVESPWGQG--ADLDILKSKLRQDTNHKIKAVCVVHNE 147 (401)
T ss_pred HHHHHHHHhcCCCCCEEEEeCCCchhHHHHHHHHHcCCceEEEECCCCCC--CCHHHHHHHHhhCcCCCccEEEEEeec
Confidence 44433443443456788888744333334566677788877776422111 12333443342 56788887664
No 247
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=57.99 E-value=1e+02 Score=26.07 Aligned_cols=85 Identities=13% Similarity=0.022 Sum_probs=47.0
Q ss_pred CCCCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcC--CC-ccEEEEeCHHHHHHHH-HHHHhcCCCCcEEE
Q 026235 57 RERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD--TI-FDWIIITSPEAGSVFL-EAWKEAGTPNVRIG 132 (241)
Q Consensus 57 R~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l--~~-~d~IiFTS~~aV~~f~-~~l~~~~~~~~~i~ 132 (241)
++-++..++.+.|+++|..+..+.- ..+ ....+.+.++.+ .. +--.|+||.......+ ..+.+.+.+..+++
T Consensus 24 ~~~pga~e~L~~L~~~G~~~~ivTN-~~~---~~~~~~~~L~~~gl~~~~~~~Ii~s~~~~~~~l~~~~~~~~~~~~~~~ 99 (242)
T TIGR01459 24 HTYPGAVQNLNKIIAQGKPVYFVSN-SPR---NIFSLHKTLKSLGINADLPEMIISSGEIAVQMILESKKRFDIRNGIIY 99 (242)
T ss_pred ccCccHHHHHHHHHHCCCEEEEEeC-CCC---ChHHHHHHHHHCCCCccccceEEccHHHHHHHHHhhhhhccCCCceEE
Confidence 3456778889999999988776544 111 112222334333 22 2236667776544433 33344445556789
Q ss_pred EeCHHHH--HHHHHh
Q 026235 133 VVGAGTA--SIFEEV 145 (241)
Q Consensus 133 aIG~~Ta--~~L~~~ 145 (241)
.||.... +.++..
T Consensus 100 ~vGd~~~d~~~~~~~ 114 (242)
T TIGR01459 100 LLGHLENDIINLMQC 114 (242)
T ss_pred EeCCcccchhhhcCC
Confidence 9998543 344444
No 248
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=57.98 E-value=1.5e+02 Score=28.65 Aligned_cols=166 Identities=15% Similarity=0.119 Sum_probs=84.3
Q ss_pred CeEEEeCCCCChHHHHHHHHHC-CCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHH-HHHHHHHhcCCCC
Q 026235 51 PKVVVTRERGKNGKLIKALAKH-RIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGS-VFLEAWKEAGTPN 128 (241)
Q Consensus 51 ~~VLitR~~~~~~~l~~~L~~~-G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~-~f~~~l~~~~~~~ 128 (241)
++|+++.+- .+...+.|++. |+++...+ ..+.+++. +.+.++|.++..+...+. .+++. .++
T Consensus 1 m~ili~~~~--~~~~~~~l~~~~~~~v~~~~------~~~~~~~~---~~~~~~d~~i~~~~~~~~~~~l~~-----~~~ 64 (526)
T PRK13581 1 MKVLVSDPI--SPAGLEILKDAPGVEVDVKT------GLDKEELL---EIIGDYDALIVRSATKVTAEVLEA-----AKN 64 (526)
T ss_pred CeEEEeCCC--CHHHHHHHhccCCeEEEeCC------CCCHHHHH---HHhcCCCEEEEcCCCCCCHHHHhh-----CCC
Confidence 368888654 24455667665 55554321 11223333 345789988765432221 22222 234
Q ss_pred cEEEE---eCHH--HHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhh--------h------------C--------C
Q 026235 129 VRIGV---VGAG--TASIFEEVIQSSKCSLDVAFSPSKATGKILASELP--------K------------N--------G 175 (241)
Q Consensus 129 ~~i~a---IG~~--Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~--------~------------~--------~ 175 (241)
+++++ +|-- -.+++.+. |+.+.-.|. .+++.++|... + + .
T Consensus 65 Lk~I~~~~~G~d~id~~~~~~~------gI~V~n~p~-~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~ 137 (526)
T PRK13581 65 LKVIGRAGVGVDNVDVPAATRR------GIIVVNAPT-GNTISAAEHTIALMLALARNIPQAHASLKAGKWERKKFMGVE 137 (526)
T ss_pred CeEEEECCcccccccHHHHHHC------CCEEEeCCC-CChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCccCccccc
Confidence 55443 3322 12556677 888765553 34444433211 0 0 0
Q ss_pred CCccEEEEEccCCCchhHHHHHHhCCCeeeEeeeeeeecCC----CChHHHHHHcCCCCEEEEECCcc
Q 026235 176 KKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVH----HVDQTVLKQALSIPVVAVASPSA 239 (241)
Q Consensus 176 ~~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~----~~~~~~~~~l~~id~IvFtSps~ 239 (241)
..++++.++--..-...+...|+..|++|..+.-|...... .....+.+.+...|+|+..-|.+
T Consensus 138 l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDiV~l~lP~t 205 (526)
T PRK13581 138 LYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISPERAAQLGVELVSLDELLARADFITLHTPLT 205 (526)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChhHHHhcCCEEEcHHHHHhhCCEEEEccCCC
Confidence 23667777755444567888999888866544433211000 00002223347889999887754
No 249
>TIGR02955 TMAO_TorT TMAO reductase system periplasmic protein TorT. Members of this family are the periplasmic protein TorT which, together with the the TorS/TorR histidine kinase/response regulator system, regulates expression of the torCAD operon for trimethylamine N-oxide reductase (TMAO reductase). It appears to bind an inducer for TMAO reductase, and shows homology to a periplasmic D-ribose binding protein.
Probab=57.80 E-value=61 Score=28.06 Aligned_cols=127 Identities=11% Similarity=0.005 Sum_probs=61.2
Q ss_pred HHHHHHHHCCCcEEEeceEEEeeCCC-chHHHHHHhcCCCccEEEEeCH--HHHHHHHHHHHhcCCCCcEEEEeCHHHHH
Q 026235 64 KLIKALAKHRIDCLELPLIQHAQGPD-TDRLSSVLNADTIFDWIIITSP--EAGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (241)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~-~~~l~~~l~~l~~~d~IiFTS~--~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~ 140 (241)
.+.+.++++|+++.....-....... .+.+...+ -..+|.||+.+. +.+...+..+ . .+++++.++.....
T Consensus 20 gi~~~a~~~g~~v~~~~~~~~~~~~~~~~~i~~l~--~~~vDgiIi~~~~~~~~~~~l~~~-~---~~iPvV~~~~~~~~ 93 (295)
T TIGR02955 20 GMVEQAKHLGVELKVLEAGGYPNLDKQLAQIEQCK--SWGADAILLGTVSPEALNHDLAQL-T---KSIPVFALVNQIDS 93 (295)
T ss_pred HHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHH--HcCCCEEEEecCChhhhhHHHHHH-h---cCCCEEEEecCCCc
Confidence 44566778898887643211000000 11222222 268999999764 2222222222 1 25788877433211
Q ss_pred HHHHhhhccCCCCceeecCCC-CCHHHHHHHhhhCCCC---ccEEEEEccCCCc-------hhHHHHHHhCCCeeeE
Q 026235 141 IFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKK---KCTVLYPASAKAS-------NEIEEGLSNRGFEVVR 206 (241)
Q Consensus 141 ~L~~~~~~~~~Gi~~~~~p~~-~t~e~L~~~l~~~~~~---~~~iL~~~g~~~~-------~~L~~~L~~~G~~V~~ 206 (241)
. . .+ ..+..+. ..+..+.+.|.+.... .++++++.|.... .-+.+.|++.|+++..
T Consensus 94 ~---~------~~-~~V~~D~~~~g~~~~~~L~~~~~~~~g~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~~~ 160 (295)
T TIGR02955 94 N---Q------VK-GRVGVDWYQMGYQAGEYLAQRHPKGSGPTTLAWLPGPKNRGGTKPVTQGFRAALEGSDVEISA 160 (295)
T ss_pred c---c------ee-EEEeecHHHHHHHHHHHHHHhcccCCCCeeEEEEeCCCcCCchhHHHHHHHHHHhcCCcEEEE
Confidence 1 1 11 1122222 2334555555542211 3479888775432 2456678778876653
No 250
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=57.75 E-value=56 Score=29.93 Aligned_cols=137 Identities=14% Similarity=0.169 Sum_probs=77.7
Q ss_pred CCCCeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCC-------chHHHHHHhcCCCccEEEEeCHH-HHHHHHH
Q 026235 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPD-------TDRLSSVLNADTIFDWIIITSPE-AGSVFLE 119 (241)
Q Consensus 48 l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~-------~~~l~~~l~~l~~~d~IiFTS~~-aV~~f~~ 119 (241)
..++..+.+.|..-.+...+++.. |++....++- .+.++..++.......++=+|.. +.++++-
T Consensus 15 ~p~~~L~gPGPsnl~~~V~~A~~~--------~~lgh~sPe~~qIm~~v~egikyVFkT~n~~tf~isgsGh~g~E~al~ 86 (385)
T KOG2862|consen 15 VPVRTLLGPGPSNLSGRVQEAMSR--------PSLGHMSPEFVQIMDEVLEGIKYVFKTANAQTFVISGSGHSGWEAALV 86 (385)
T ss_pred CCcceeecCCCcCCCHHHHHhhcC--------CccccCCHHHHHHHHHHHHHHHHHhccCCCceEEEecCCcchHHHHHH
Confidence 345667788887766666666533 2222221111 12233333344566666666653 4455544
Q ss_pred HHHhcCCCCcEEEEeCH---HHHHHHHHhhhccCCCCceeecCC----CCCHHHHHHHhhhCCCCccEEEEEccCCCchh
Q 026235 120 AWKEAGTPNVRIGVVGA---GTASIFEEVIQSSKCSLDVAFSPS----KATGKILASELPKNGKKKCTVLYPASAKASNE 192 (241)
Q Consensus 120 ~l~~~~~~~~~i~aIG~---~Ta~~L~~~~~~~~~Gi~~~~~p~----~~t~e~L~~~l~~~~~~~~~iL~~~g~~~~~~ 192 (241)
.+-+.+ ++.-++.+|- ..++.++.+ |.+++.++. ..+-|.+.+.|.++.. +-+.+.+|+.+-..
T Consensus 87 N~lePg-d~vLv~~~G~wg~ra~D~~~r~------ga~V~~v~~~~G~~~~le~i~~~lsqh~p--~~vfv~hgdsSTgV 157 (385)
T KOG2862|consen 87 NLLEPG-DNVLVVSTGTWGQRAADCARRY------GAEVDVVEADIGQAVPLEEITEKLSQHKP--KAVFVTHGDSSTGV 157 (385)
T ss_pred hhcCCC-CeEEEEEechHHHHHHHHHHhh------CceeeEEecCcccCccHHHHHHHHHhcCC--ceEEEEecCccccc
Confidence 332211 3455555554 455666777 999999864 3466888888887643 56777777776666
Q ss_pred HHHHHHhCC
Q 026235 193 IEEGLSNRG 201 (241)
Q Consensus 193 L~~~L~~~G 201 (241)
+++.+...|
T Consensus 158 ~q~~~~~~g 166 (385)
T KOG2862|consen 158 LQDLLAISG 166 (385)
T ss_pred cchHHHHHH
Confidence 666444333
No 251
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=57.58 E-value=53 Score=27.37 Aligned_cols=67 Identities=12% Similarity=0.130 Sum_probs=45.3
Q ss_pred CCeEEEeCCCC-----ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHh
Q 026235 50 NPKVVVTRERG-----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE 123 (241)
Q Consensus 50 g~~VLitR~~~-----~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~ 123 (241)
+.+|++..... ..+.+.+.+++.|+++..++.+.. .+.+++.+ .+...|.|+|+-.+..+.... +++
T Consensus 29 ~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~---~~~~~~~~---~l~~ad~I~~~GG~~~~~~~~-l~~ 100 (210)
T cd03129 29 GARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDT---ANDPDVVA---RLLEADGIFVGGGNQLRLLSV-LRE 100 (210)
T ss_pred CCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCC---CCCHHHHH---HHhhCCEEEEcCCcHHHHHHH-HHh
Confidence 46666554332 356678889999999999887765 23333444 347899999999988765444 444
No 252
>PLN02306 hydroxypyruvate reductase
Probab=57.58 E-value=1.6e+02 Score=27.35 Aligned_cols=146 Identities=14% Similarity=0.121 Sum_probs=73.0
Q ss_pred CCeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHH-HHHHHHHHHhcCCCC
Q 026235 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA-GSVFLEAWKEAGTPN 128 (241)
Q Consensus 50 g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~a-V~~f~~~l~~~~~~~ 128 (241)
..+|+++.+-. .+...+.|++.|+++.... ......+.+++.+.+ ..++|.++..+... -+.+++.+.+. +
T Consensus 15 ~~~v~~~~~~~-~~~~~~~L~~~~~~v~~~~--~~~~~~~~~~~~~~~--~~~~d~vi~~~~~~i~~~~l~~~~~l---~ 86 (386)
T PLN02306 15 KYRVVSTKPMP-GTRWINLLVDQDCRVEICT--EKKTILSVEDIIALI--GDKCDGVIGQLTEDWGETLFSALSKA---G 86 (386)
T ss_pred CceEEEeCCCC-cHHHHHHHHhcCceEEecC--CcCCCCCHHHHHHHh--hcCCcEEEEcCCCCcCHHHHHhCCcC---C
Confidence 35688888753 2224567777777765221 001111233343332 14588877654322 23344433221 1
Q ss_pred cEE-EEeCHHH----HHHHHHhhhccCCCCceeecCCCCCHHHHHHHhh------------------h------------
Q 026235 129 VRI-GVVGAGT----ASIFEEVIQSSKCSLDVAFSPSKATGKILASELP------------------K------------ 173 (241)
Q Consensus 129 ~~i-~aIG~~T----a~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~------------------~------------ 173 (241)
+++ .+.|..+ -+++++. |+.+.-.|. ..++.++|... +
T Consensus 87 lk~I~~~~~G~D~iD~~aa~~~------gI~V~n~pg-~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~ 159 (386)
T PLN02306 87 GKAFSNMAVGYNNVDVEAANKY------GIAVGNTPG-VLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFV 159 (386)
T ss_pred ceEEEECCcccccccHHHHHHC------CCEEEECCC-cCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccC
Confidence 233 3333333 4667888 998866553 44454443211 0
Q ss_pred -CCCCccEEEEEccCCCchhHHHHHH-hCCCeeeEeeee
Q 026235 174 -NGKKKCTVLYPASAKASNEIEEGLS-NRGFEVVRLNTY 210 (241)
Q Consensus 174 -~~~~~~~iL~~~g~~~~~~L~~~L~-~~G~~V~~~~vY 210 (241)
....|+++.++.-......+.+.|. .-|.+|....-|
T Consensus 160 g~~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~ 198 (386)
T PLN02306 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY 198 (386)
T ss_pred CcCCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCC
Confidence 0123567766655444556777774 677766544433
No 253
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=57.47 E-value=1.3e+02 Score=26.92 Aligned_cols=159 Identities=16% Similarity=0.135 Sum_probs=84.0
Q ss_pred EEEeCCCCChHH----HHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHh---cCCCccEEEEeCH--HHHH--HHHHHH
Q 026235 53 VVVTRERGKNGK----LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN---ADTIFDWIIITSP--EAGS--VFLEAW 121 (241)
Q Consensus 53 VLitR~~~~~~~----l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~---~l~~~d~IiFTS~--~aV~--~f~~~l 121 (241)
+++....+.+.. ..+.+++.|+++..+-+-+.. ..+++.+.+. ...+.|.|+.--| ..++ ..++.+
T Consensus 37 ii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~---~~~el~~~I~~lN~D~~V~GIlvq~PLp~~i~~~~i~~~I 113 (284)
T PRK14190 37 VILVGDDPASHSYVRGKKKAAEKVGIYSELYEFPADI---TEEELLALIDRLNADPRINGILVQLPLPKHIDEKAVIERI 113 (284)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcC
Confidence 444444443333 344667789887765443221 2234444443 4467889998876 2221 112221
Q ss_pred HhcCCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCC--CCccEEEEE-ccCCCchhHHHHHH
Q 026235 122 KEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEEGLS 198 (241)
Q Consensus 122 ~~~~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~--~~~~~iL~~-~g~~~~~~L~~~L~ 198 (241)
. +.+-+=++-+.-...|. . |-. .+.| -|+.+.++.|..+. ..|++++++ ||.....-|...|.
T Consensus 114 ~----p~KDVDGl~~~n~g~l~-~------~~~-~~~P--cTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~ 179 (284)
T PRK14190 114 S----PEKDVDGFHPINVGRMM-L------GQD-TFLP--CTPHGILELLKEYNIDISGKHVVVVGRSNIVGKPVGQLLL 179 (284)
T ss_pred C----ccccccccCHhhHHHHh-c------CCC-CCCC--CCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHH
Confidence 1 11222222232222222 2 322 2444 58999998887663 457776555 45555566888999
Q ss_pred hCCCeeeEeeeeeeecCCCChHHHHHHcCCCCEEEEEC
Q 026235 199 NRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVAS 236 (241)
Q Consensus 199 ~~G~~V~~~~vY~~~~~~~~~~~~~~~l~~id~IvFtS 236 (241)
++|++|.-|.-+. ..+.+.+.+.|+|+-..
T Consensus 180 ~~~atVt~chs~t--------~~l~~~~~~ADIvI~Av 209 (284)
T PRK14190 180 NENATVTYCHSKT--------KNLAELTKQADILIVAV 209 (284)
T ss_pred HCCCEEEEEeCCc--------hhHHHHHHhCCEEEEec
Confidence 9999998664221 12222335677776543
No 254
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=57.41 E-value=44 Score=28.68 Aligned_cols=79 Identities=11% Similarity=0.023 Sum_probs=48.2
Q ss_pred CCCCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHH------------HH-HHHHHHh
Q 026235 57 RERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG------------SV-FLEAWKE 123 (241)
Q Consensus 57 R~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV------------~~-f~~~l~~ 123 (241)
-......++.+.|++.|+++..++.-+.. .. ...+.+||.||+...... +. +.+.+.+
T Consensus 7 pG~n~~~~~~~al~~aG~~v~~v~~~~~~--~~-------~~~l~~~d~liipGG~~~~d~l~~~~~~~~~~~~~~~l~~ 77 (238)
T cd01740 7 PGSNCDRDMAYAFELAGFEAEDVWHNDLL--AG-------RKDLDDYDGVVLPGGFSYGDYLRAGAIAAASPLLMEEVKE 77 (238)
T ss_pred CCcCCHHHHHHHHHHcCCCEEEEeccCCc--cc-------cCCHhhCCEEEECCCCCcccccccccccccChhHHHHHHH
Confidence 33334567889999999999987764421 11 013467899999876321 10 2333333
Q ss_pred cCCCCcEEEEeCHHHHHHHHHh
Q 026235 124 AGTPNVRIGVVGAGTASIFEEV 145 (241)
Q Consensus 124 ~~~~~~~i~aIG~~Ta~~L~~~ 145 (241)
....++++++|.-. .+.|-+.
T Consensus 78 ~~~~g~pvlGIC~G-~QlL~~~ 98 (238)
T cd01740 78 FAERGGLVLGICNG-FQILVEL 98 (238)
T ss_pred HHhCCCeEEEECcH-HHHHHHc
Confidence 22357889888865 4777776
No 255
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=57.41 E-value=61 Score=26.99 Aligned_cols=71 Identities=23% Similarity=0.295 Sum_probs=45.2
Q ss_pred HHHHHH-hhhCCCCccEEEEEccCC-----CchhHHHHHHhCCCeeeEeeeeeeecCCCChHHHHHHcCCCCEEEEECCc
Q 026235 165 KILASE-LPKNGKKKCTVLYPASAK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPS 238 (241)
Q Consensus 165 e~L~~~-l~~~~~~~~~iL~~~g~~-----~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~l~~id~IvFtSps 238 (241)
..+++. +......+.+++++.... .-+...+.+++.|+++..+.+..+ ...+++.+.+...|+|+|+-..
T Consensus 15 ~~~~~~~~~~~~~~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~----~~~~~~~~~l~~ad~I~~~GG~ 90 (210)
T cd03129 15 RPILQDFLARAGGAGARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDT----ANDPDVVARLLEADGIFVGGGN 90 (210)
T ss_pred HHHHHHHHHHcCCCCCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCC----CCCHHHHHHHhhCCEEEEcCCc
Confidence 334444 333332456777775543 234577888999999988887665 2233455566889999998654
Q ss_pred c
Q 026235 239 A 239 (241)
Q Consensus 239 ~ 239 (241)
+
T Consensus 91 ~ 91 (210)
T cd03129 91 Q 91 (210)
T ss_pred H
Confidence 3
No 256
>PRK07060 short chain dehydrogenase; Provisional
Probab=57.26 E-value=78 Score=26.17 Aligned_cols=33 Identities=21% Similarity=0.113 Sum_probs=25.4
Q ss_pred CCCCCCeEEEeCCCC-ChHHHHHHHHHCCCcEEE
Q 026235 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLE 78 (241)
Q Consensus 46 ~~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~ 78 (241)
.++.|++++|+.... -...+.+.|.++|+++..
T Consensus 5 ~~~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~ 38 (245)
T PRK07060 5 FDFSGKSVLVTGASSGIGRACAVALAQRGARVVA 38 (245)
T ss_pred cccCCCEEEEeCCcchHHHHHHHHHHHCCCEEEE
Confidence 457789999998753 467788888889987654
No 257
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=56.96 E-value=25 Score=34.38 Aligned_cols=73 Identities=22% Similarity=0.287 Sum_probs=50.4
Q ss_pred ecCCCCCHHHHHHHhhhCCCCccEEEEEccCC-CchhHHHHHHhCCCeeeEeeeeeeecCCCCh-HHHHHHc--CCCCEE
Q 026235 157 FSPSKATGKILASELPKNGKKKCTVLYPASAK-ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVD-QTVLKQA--LSIPVV 232 (241)
Q Consensus 157 ~~p~~~t~e~L~~~l~~~~~~~~~iL~~~g~~-~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~-~~~~~~l--~~id~I 232 (241)
+-|.....++|+.+|.+....+.|+|+-.=-+ =.++|.+.|++.|++|..+ ...++... -++++.| +.+|++
T Consensus 425 vRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~Yl----HSdidTlER~eIirdLR~G~~DvL 500 (663)
T COG0556 425 VRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYL----HSDIDTLERVEIIRDLRLGEFDVL 500 (663)
T ss_pred eecCCCcHHHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEee----eccchHHHHHHHHHHHhcCCccEE
Confidence 34566788999999988766678988875433 3478999999999998755 33333211 2344554 788887
Q ss_pred E
Q 026235 233 A 233 (241)
Q Consensus 233 v 233 (241)
|
T Consensus 501 V 501 (663)
T COG0556 501 V 501 (663)
T ss_pred E
Confidence 6
No 258
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain. This model represents the alpha chain of the vanadium-containing component of the vanadium-iron nitrogenase compound I. The complex also includes a second alpha chain, two beta chains and two delta chains. Compount I interacts with compound II also known as the iron-protein which transfers electrons to compound I where the catalysis occurs.
Probab=56.88 E-value=1e+02 Score=29.28 Aligned_cols=139 Identities=12% Similarity=0.073 Sum_probs=73.2
Q ss_pred ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHh-cCCCCcEEEEeCH-HH
Q 026235 61 KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE-AGTPNVRIGVVGA-GT 138 (241)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~-~~~~~~~i~aIG~-~T 138 (241)
...++.+.|++.|+++...- ......++ +...+....-+..++.....+.+.+++ .+.+-+.+--+|- .|
T Consensus 215 d~~el~~lL~~~Gi~v~~~~----~g~~t~~e----i~~~~~A~lnlv~~~~~~~~~A~~Leer~GiP~~~~~p~Gi~~T 286 (461)
T TIGR01860 215 DTQVLQKYWDKMGIQVIAHF----TGNGTYDD----LRCMHRAQLNVVNCARSAGYIANELKKRYGIPRLDVDTWGFNYM 286 (461)
T ss_pred cHHHHHHHHHHcCCcEEEEe----CCCCCHHH----HHhcccCcEEEEECchHHHHHHHHHHHHhCCCeecCCcCCHHHH
Confidence 45789999999999997421 11112232 334566666554444433446666654 3544332223674 56
Q ss_pred HHHHHHhhhccCCCCcee---ecCCC-CCHHHHHHHhhhCCCCccEEEEEccCCCchhHHHHHH-hCCCeeeEeeee
Q 026235 139 ASIFEEVIQSSKCSLDVA---FSPSK-ATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLS-NRGFEVVRLNTY 210 (241)
Q Consensus 139 a~~L~~~~~~~~~Gi~~~---~~p~~-~t~e~L~~~l~~~~~~~~~iL~~~g~~~~~~L~~~L~-~~G~~V~~~~vY 210 (241)
.+.|++.. .++|+... ++|++ ....+-++..... ..|+|+.+..+....-.+...|. +.|.++..+..+
T Consensus 287 ~~~L~~la--~~~g~~~~~e~~I~~e~~~~~~~Ld~~~~~-L~GkrvaI~~~~~~~~~~~~~l~~ElGmevv~~~~~ 360 (461)
T TIGR01860 287 AEALRKIG--AFFGIEDKAEEVIAEEYAKYKPKLDWYKER-LQGKKMCIWTGGPRLWHWTKALEDDLGMQVVAMSSK 360 (461)
T ss_pred HHHHHHHH--HHhCCcHHHHHHHHHHHHHHHHHHHHHHHH-cCCCEEEEECCCchHHHHHHHHHHhCCCEEEEEeee
Confidence 66777652 22365321 11111 0111122222222 35789888755433335778887 699988776443
No 259
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=56.86 E-value=1.1e+02 Score=27.32 Aligned_cols=158 Identities=17% Similarity=0.160 Sum_probs=86.1
Q ss_pred EEEeCCCCChHHH----HHHHHHCCCcEEEeceEEEeeCCCchHHHHHHh---cCCCccEEEEeCH--HHH--HHHHHHH
Q 026235 53 VVVTRERGKNGKL----IKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN---ADTIFDWIIITSP--EAG--SVFLEAW 121 (241)
Q Consensus 53 VLitR~~~~~~~l----~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~---~l~~~d~IiFTS~--~aV--~~f~~~l 121 (241)
+++....+.+..+ .+.+++.|+++..+-+-+. ...+++.+.++ ...+.|.|+.--| ..+ +..++.+
T Consensus 38 ii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~---~s~~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~~~I 114 (285)
T PRK10792 38 VVLVGSDPASQVYVASKRKACEEVGFVSRSYDLPET---TSEAELLALIDELNADPTIDGILVQLPLPAHIDNVKVLERI 114 (285)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCC---CCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcc
Confidence 4555554443333 4467778988766544221 12234444443 4467899998877 222 1122222
Q ss_pred Hh-cCCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCC--CCccEEEEE-ccCCCchhHHHHH
Q 026235 122 KE-AGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEEGL 197 (241)
Q Consensus 122 ~~-~~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~--~~~~~iL~~-~g~~~~~~L~~~L 197 (241)
.. ...++..-+-+|. |. . |-. .+.| -|+.+.++.|..+. ..|++++++ ||.....-|...|
T Consensus 115 ~p~KDVDGl~~~n~g~-----l~-~------~~~-~~~P--cTp~av~~ll~~~~i~l~Gk~vvViGrs~iVG~Pla~lL 179 (285)
T PRK10792 115 HPDKDVDGFHPYNVGR-----LA-Q------RIP-LLRP--CTPRGIMTLLERYGIDTYGLNAVVVGASNIVGRPMSLEL 179 (285)
T ss_pred CcccccCccChhhHhH-----Hh-C------CCC-CCCC--CCHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHH
Confidence 11 1123444444442 21 2 322 2444 48999998887653 357787666 4443556688889
Q ss_pred HhCCCeeeEeeeeeeecCCCChHHHHHHcCCCCEEEEEC
Q 026235 198 SNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVAS 236 (241)
Q Consensus 198 ~~~G~~V~~~~vY~~~~~~~~~~~~~~~l~~id~IvFtS 236 (241)
.++|++|.-+.-.. .++.+.+.+.|+|+-+-
T Consensus 180 ~~~~atVtv~hs~T--------~~l~~~~~~ADIvi~av 210 (285)
T PRK10792 180 LLAGCTVTVCHRFT--------KNLRHHVRNADLLVVAV 210 (285)
T ss_pred HHCCCeEEEEECCC--------CCHHHHHhhCCEEEEcC
Confidence 99999886664321 12222335778877655
No 260
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=56.71 E-value=1.7e+02 Score=27.55 Aligned_cols=60 Identities=12% Similarity=0.138 Sum_probs=40.2
Q ss_pred CeEEEeCCCCChHHHHHHHHHCCCcEEEece--------EEE--eeC--CCchHHHHHHhcCCCccEEEEeCH
Q 026235 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPL--------IQH--AQG--PDTDRLSSVLNADTIFDWIIITSP 111 (241)
Q Consensus 51 ~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~--------~~~--~~~--~~~~~l~~~l~~l~~~d~IiFTS~ 111 (241)
|+||+.........+...|++.|.++..+|. +.. ... .+.+.+.+..+ ..++|+||.++-
T Consensus 3 ~kVLvlG~G~re~al~~~l~~~g~~v~~~~~~~Npg~~~~a~~~~~~~~~d~e~l~~~~~-~~~id~Vi~~~d 74 (435)
T PRK06395 3 MKVMLVGSGGREDAIARAIKRSGAILFSVIGHENPSIKKLSKKYLFYDEKDYDLIEDFAL-KNNVDIVFVGPD 74 (435)
T ss_pred eEEEEECCcHHHHHHHHHHHhCCCeEEEEECCCChhhhhcccceeecCCCCHHHHHHHHH-HhCCCEEEECCC
Confidence 7899999987788899899999987777654 111 111 23344555443 357899887653
No 261
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=56.69 E-value=31 Score=28.73 Aligned_cols=71 Identities=11% Similarity=0.062 Sum_probs=41.2
Q ss_pred HHHHHHHCCCcEEEeceEEEeeCCC--chHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCC---CCcEEEEeCHH
Q 026235 65 LIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGAG 137 (241)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~--~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~---~~~~i~aIG~~ 137 (241)
+.+.|+++|.++.. .+......+ .+.+.+.+......|+|+.++......+.+.+.+.++ .++.+++.+..
T Consensus 139 f~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~~p~di~v~g~d~~ 214 (266)
T cd06282 139 YRAAMRAAGLAPLP--PVEIPFNTAALPSALLALLTAHPAPTAIFCSNDLLALAVIRALRRLGLRVPDDLSVVGFDGI 214 (266)
T ss_pred HHHHHHHcCCCCCc--cccCCCcHHHHHHHHHHHhcCCCCCCEEEECCcHHHHHHHHHHHHcCCCCCCceEEEeecch
Confidence 45567777765432 111111111 1234444433346799999988877778888888775 35667777653
No 262
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=56.50 E-value=61 Score=27.44 Aligned_cols=69 Identities=19% Similarity=0.070 Sum_probs=42.4
Q ss_pred CCCCCeEEEeCCC---CChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCC--CccEEE--EeCHHHHHHHHH
Q 026235 47 SNSNPKVVVTRER---GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT--IFDWII--ITSPEAGSVFLE 119 (241)
Q Consensus 47 ~l~g~~VLitR~~---~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~--~~d~Ii--FTS~~aV~~f~~ 119 (241)
.+.||++|||... .-...+++.|.+.|++|... .+. +...+.++++. ....+- +|++.+++.+++
T Consensus 4 ~l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~--~r~------~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~ 75 (252)
T PRK06079 4 ILSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYT--YQN------DRMKKSLQKLVDEEDLLVECDVASDESIERAFA 75 (252)
T ss_pred ccCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEe--cCc------hHHHHHHHhhccCceeEEeCCCCCHHHHHHHHH
Confidence 4678999999985 45788999999999987643 221 11111222221 111111 578888888777
Q ss_pred HHHh
Q 026235 120 AWKE 123 (241)
Q Consensus 120 ~l~~ 123 (241)
.+.+
T Consensus 76 ~~~~ 79 (252)
T PRK06079 76 TIKE 79 (252)
T ss_pred HHHH
Confidence 6644
No 263
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=56.15 E-value=11 Score=29.57 Aligned_cols=87 Identities=15% Similarity=0.184 Sum_probs=56.5
Q ss_pred EeCHHHHHHHHHhhhccCCC--CceeecCCCCCHHHHHHHhhhCCCCccEEEEEccCCCchhHHHHHHhCCCeeeEeeee
Q 026235 133 VVGAGTASIFEEVIQSSKCS--LDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTY 210 (241)
Q Consensus 133 aIG~~Ta~~L~~~~~~~~~G--i~~~~~p~~~t~e~L~~~l~~~~~~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~~~vY 210 (241)
+||..|-+.++++ . |++.-.....+.+.|.+.+.++.+ +.+++..+...+.+.+.|...+.. +.+|
T Consensus 9 SIG~qtLdVi~~~------~d~f~v~~Lsa~~n~~~L~~q~~~f~p---~~v~i~~~~~~~~l~~~~~~~~~~---~~v~ 76 (129)
T PF02670_consen 9 SIGTQTLDVIRKH------PDKFEVVALSAGSNIEKLAEQAREFKP---KYVVIADEEAYEELKKALPSKGPG---IEVL 76 (129)
T ss_dssp HHHHHHHHHHHHC------TTTEEEEEEEESSTHHHHHHHHHHHT----SEEEESSHHHHHHHHHHHHHTTSS---SEEE
T ss_pred HHHHHHHHHHHhC------CCceEEEEEEcCCCHHHHHHHHHHhCC---CEEEEcCHHHHHHHHHHhhhcCCC---CEEE
Confidence 4899999999998 6 666555567899999998888753 456665666677888888655543 2333
Q ss_pred eeecCCCChHHHHHHc--CCCCEEEEECC
Q 026235 211 TTEPVHHVDQTVLKQA--LSIPVVAVASP 237 (241)
Q Consensus 211 ~~~~~~~~~~~~~~~l--~~id~IvFtSp 237 (241)
.- .+.+.+.. .++|+++....
T Consensus 77 ~G------~~~l~~~~~~~~~D~vv~Ai~ 99 (129)
T PF02670_consen 77 SG------PEGLEELAEEPEVDIVVNAIV 99 (129)
T ss_dssp ES------HHHHHHHHTHTT-SEEEE--S
T ss_pred eC------hHHHHHHhcCCCCCEEEEeCc
Confidence 21 23333333 58999887643
No 264
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=55.84 E-value=41 Score=29.51 Aligned_cols=63 Identities=16% Similarity=0.167 Sum_probs=42.6
Q ss_pred CCCCeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEe-----eCCCchHHHHHHhcCCCccEEEEeCHH
Q 026235 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHA-----QGPDTDRLSSVLNADTIFDWIIITSPE 112 (241)
Q Consensus 48 l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~-----~~~~~~~l~~~l~~l~~~d~IiFTS~~ 112 (241)
..|.+|+++|+.- ......+...|+++..++.-... ...+.+.+++.++.-.+...|++|+++
T Consensus 97 ~~gd~Vlv~~~~h--~s~~~~~~~~g~~~~~v~~~~~~~~~~~~~i~~~~l~~~l~~~~~~k~v~l~~p~ 164 (294)
T cd00615 97 GPGDKILIDRNCH--KSVINGLVLSGAVPVYLKPERNPYYGIAGGIPPETFKKALIEHPDAKAAVITNPT 164 (294)
T ss_pred CCCCEEEEeCCch--HHHHHHHHHCCCEEEEecCccCcccCcCCCCCHHHHHHHHHhCCCceEEEEECCC
Confidence 4678999999863 33456677789998888764221 122456677777443567889999874
No 265
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=55.77 E-value=46 Score=26.90 Aligned_cols=50 Identities=14% Similarity=0.104 Sum_probs=33.6
Q ss_pred ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcC---CCccEEEEeCHHHH
Q 026235 61 KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD---TIFDWIIITSPEAG 114 (241)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l---~~~d~IiFTS~~aV 114 (241)
....+...|++.|+++..... .+ ++.+.+.+.+++. ..+|.||.|-..++
T Consensus 23 n~~~l~~~L~~~G~~v~~~~i---v~-Dd~~~i~~~l~~~~~~~~~DlVIttGGtg~ 75 (163)
T TIGR02667 23 SGQYLVERLTEAGHRLADRAI---VK-DDIYQIRAQVSAWIADPDVQVILITGGTGF 75 (163)
T ss_pred cHHHHHHHHHHCCCeEEEEEE---cC-CCHHHHHHHHHHHHhcCCCCEEEECCCcCC
Confidence 355788889999998765433 33 4455666666442 57999998876654
No 266
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=55.71 E-value=42 Score=30.89 Aligned_cols=66 Identities=20% Similarity=0.162 Sum_probs=39.8
Q ss_pred CCHHHHHHHhhhCCCCccEEEEEccCCC------chhHHHHHHhCCCeeeEeeeeeeecCCCChHHH---HHHc--CCCC
Q 026235 162 ATGKILASELPKNGKKKCTVLYPASAKA------SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTV---LKQA--LSIP 230 (241)
Q Consensus 162 ~t~e~L~~~l~~~~~~~~~iL~~~g~~~------~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~---~~~l--~~id 230 (241)
...+.+.+.+.+. ++|++++++... .+.+.+.|+..|+++ .+|.........+.+ .+.. .++|
T Consensus 15 g~~~~l~~~~~~~---~~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~---~~~~~v~~~p~~~~v~~~~~~~~~~~~D 88 (382)
T cd08187 15 GTESELGKELKKY---GKKVLLVYGGGSIKKNGLYDRVIASLKEAGIEV---VELGGVEPNPRLETVREGIELCKEEKVD 88 (382)
T ss_pred CHHHHHHHHHHHh---CCEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeE---EEECCccCCCCHHHHHHHHHHHHHcCCC
Confidence 4456666666654 378999987522 256888999888764 455544433322222 2222 5789
Q ss_pred EEE
Q 026235 231 VVA 233 (241)
Q Consensus 231 ~Iv 233 (241)
+|+
T Consensus 89 ~II 91 (382)
T cd08187 89 FIL 91 (382)
T ss_pred EEE
Confidence 887
No 267
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=55.57 E-value=1.6e+02 Score=26.60 Aligned_cols=165 Identities=10% Similarity=0.157 Sum_probs=82.6
Q ss_pred CeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCCCCcE
Q 026235 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVR 130 (241)
Q Consensus 51 ~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~ 130 (241)
++|+++.+-. +...+.|++. +++...+ .....+.+++.+ .+.++|.++..+..--+.+++. .++++
T Consensus 3 ~~vl~~~~~~--~~~~~~l~~~-~~v~~~~---~~~~~~~~~~~~---~~~~ad~li~~~~~~~~~~l~~-----~p~Lk 68 (323)
T PRK15409 3 PSVILYKALP--DDLLQRLEEH-FTVTQVA---NLSPETVEQHAA---AFAEAEGLLGSGEKVDAALLEK-----MPKLR 68 (323)
T ss_pred ceEEEeCCCC--HHHHHHHHhc-CcEEEcC---CCCCCCHHHHHH---HhcCCeEEEEcCCCCCHHHHhh-----CCCCe
Confidence 5799998753 4555677664 4544322 111112233333 4578898775332211222332 23455
Q ss_pred EE-EeCHHH----HHHHHHhhhccCCCCceeecCCCCCHHHHHHHhh-------hC------------------------
Q 026235 131 IG-VVGAGT----ASIFEEVIQSSKCSLDVAFSPSKATGKILASELP-------KN------------------------ 174 (241)
Q Consensus 131 i~-aIG~~T----a~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~-------~~------------------------ 174 (241)
++ +.|..+ .+++.+. |+.+.-.|. ..++.++|... +.
T Consensus 69 ~I~~~g~G~d~id~~~~~~~------gI~V~n~~~-~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~ 141 (323)
T PRK15409 69 AASTISVGYDNFDVDALTAR------KILLMHTPT-VLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGT 141 (323)
T ss_pred EEEECceecccccHHHHHHC------CCEEEeCCC-CCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccC
Confidence 44 333333 4667778 998765553 44444443320 00
Q ss_pred CCCccEEEEEccCCCchhHHHHHH-hCCCeeeEeeeeeeecCCCC-------hHHHHHHcCCCCEEEEECCcc
Q 026235 175 GKKKCTVLYPASAKASNEIEEGLS-NRGFEVVRLNTYTTEPVHHV-------DQTVLKQALSIPVVAVASPSA 239 (241)
Q Consensus 175 ~~~~~~iL~~~g~~~~~~L~~~L~-~~G~~V~~~~vY~~~~~~~~-------~~~~~~~l~~id~IvFtSps~ 239 (241)
...|+++.++.-......+.+.|+ .-|.+|. .|........ ...+.+.+.+.|+|+..-|.+
T Consensus 142 ~L~gktvGIiG~G~IG~~va~~l~~~fgm~V~---~~~~~~~~~~~~~~~~~~~~l~ell~~sDvv~lh~plt 211 (323)
T PRK15409 142 DVHHKTLGIVGMGRIGMALAQRAHFGFNMPIL---YNARRHHKEAEERFNARYCDLDTLLQESDFVCIILPLT 211 (323)
T ss_pred CCCCCEEEEEcccHHHHHHHHHHHhcCCCEEE---EECCCCchhhHHhcCcEecCHHHHHHhCCEEEEeCCCC
Confidence 123567766644444456777786 6666554 3433211110 012233347899999887754
No 268
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=55.44 E-value=84 Score=25.47 Aligned_cols=89 Identities=19% Similarity=0.087 Sum_probs=51.8
Q ss_pred EEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEe----CHHHHHHHHHHHHhcCCCCc
Q 026235 54 VVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAWKEAGTPNV 129 (241)
Q Consensus 54 LitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFT----S~~aV~~f~~~l~~~~~~~~ 129 (241)
++-....-...+.+.|++.|+++..+|.-.. .+.. ..+..+|.||.+ |+.....+....... ..++
T Consensus 3 ~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~-----~~~~----~~~~~~dgvil~gG~~~~~~~~~~~~i~~~~-~~~~ 72 (184)
T cd01743 3 LIDNYDSFTYNLVQYLRELGAEVVVVRNDEI-----TLEE----LELLNPDAIVISPGPGHPEDAGISLEIIRAL-AGKV 72 (184)
T ss_pred EEeCCCccHHHHHHHHHHcCCceEEEeCCCC-----CHHH----HhhcCCCEEEECCCCCCcccchhHHHHHHHH-hcCC
Confidence 3445666778899999999999988777332 1111 134679998875 332222222222111 2357
Q ss_pred EEEEeCHHHHHHHHHhhhccCCCCceeec
Q 026235 130 RIGVVGAGTASIFEEVIQSSKCSLDVAFS 158 (241)
Q Consensus 130 ~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~ 158 (241)
+++.|.-...-..+.+ |-++.-.
T Consensus 73 PvlGIC~G~Qlla~~~------Gg~v~~~ 95 (184)
T cd01743 73 PILGVCLGHQAIAEAF------GGKVVRA 95 (184)
T ss_pred CEEEECHhHHHHHHHh------CCEEEeC
Confidence 8888877654444555 7665433
No 269
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=55.43 E-value=22 Score=25.22 Aligned_cols=37 Identities=14% Similarity=0.135 Sum_probs=28.1
Q ss_pred cEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhh
Q 026235 129 VRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (241)
Q Consensus 129 ~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~ 172 (241)
+-+.-||+...+.|++. |+++... ...+.+..++++.
T Consensus 57 li~~~iG~~~~~~L~~~------gI~v~~~-~~~~i~~~l~~~~ 93 (94)
T PF02579_consen 57 LICGGIGEGAFRALKEA------GIKVYQG-AGGDIEEALEAYL 93 (94)
T ss_dssp EEESCSCHHHHHHHHHT------TSEEEES-TSSBHHHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHC------CCEEEEc-CCCCHHHHHHHHh
Confidence 34445899999999999 9998554 6678787777654
No 270
>PRK09739 hypothetical protein; Provisional
Probab=55.30 E-value=33 Score=28.36 Aligned_cols=60 Identities=8% Similarity=0.017 Sum_probs=38.7
Q ss_pred HHHHHHHHHCCCcEEEeceEEEee--CC--------------CchHHHHHHhcCCCccEEEEeCH-------HHHHHHHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQ--GP--------------DTDRLSSVLNADTIFDWIIITSP-------EAGSVFLE 119 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~--~~--------------~~~~l~~~l~~l~~~d~IiFTS~-------~aV~~f~~ 119 (241)
+.+.+.+++.|.++..+-+++... .. ..+++.+.++.+...|.|||.+| ...+.|++
T Consensus 24 ~~~~~~~~~~g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~iV~~~P~y~~~~Pa~LK~~iD 103 (199)
T PRK09739 24 EAIHQRAQERGHQVEELDLYRSGFDPVLTPEDEPDWKNPDKRYSPEVHQLYSELLEHDALVFVFPLWWYSFPAMLKGYID 103 (199)
T ss_pred HHHHHHHHHCCCEEEEEEhhhhCCCCCCCHHHhhhhcccCCCCCHHHHHHHHHHHhCCEEEEECchhhhcchHHHHHHHH
Confidence 445556677888888887776421 00 12345555666788999999997 56666666
Q ss_pred HHH
Q 026235 120 AWK 122 (241)
Q Consensus 120 ~l~ 122 (241)
.+-
T Consensus 104 ~v~ 106 (199)
T PRK09739 104 RVW 106 (199)
T ss_pred HHc
Confidence 553
No 271
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=54.98 E-value=60 Score=23.81 Aligned_cols=27 Identities=22% Similarity=0.350 Sum_probs=20.9
Q ss_pred ccEEEEEccCCCc-----hhHHHHHHhCCCee
Q 026235 178 KCTVLYPASAKAS-----NEIEEGLSNRGFEV 204 (241)
Q Consensus 178 ~~~iL~~~g~~~~-----~~L~~~L~~~G~~V 204 (241)
.++||++||.+-. ..+.+.++++|+++
T Consensus 3 ~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~ 34 (95)
T TIGR00853 3 ETNILLLCAAGMSTSLLVNKMNKAAEEYGVPV 34 (95)
T ss_pred ccEEEEECCCchhHHHHHHHHHHHHHHCCCcE
Confidence 3689999998744 45778888899874
No 272
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=54.98 E-value=68 Score=26.46 Aligned_cols=33 Identities=18% Similarity=0.142 Sum_probs=24.4
Q ss_pred CCCCCeEEEeCCCC-ChHHHHHHHHHCCCcEEEe
Q 026235 47 SNSNPKVVVTRERG-KNGKLIKALAKHRIDCLEL 79 (241)
Q Consensus 47 ~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~ 79 (241)
.+.+++|||+.... -...+.+.|.++|+++..+
T Consensus 2 ~~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~ 35 (247)
T PRK05565 2 KLMGKVAIVTGASGGIGRAIAELLAKEGAKVVIA 35 (247)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE
Confidence 46678899998754 3667888888889877644
No 273
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=54.97 E-value=24 Score=32.32 Aligned_cols=77 Identities=16% Similarity=0.129 Sum_probs=53.4
Q ss_pred cccccCCCCCCCeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHH
Q 026235 40 DATSASASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVF 117 (241)
Q Consensus 40 ~~~~~~~~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f 117 (241)
-+.+...++++++++...+-.....+-+.|++.|+++...-.+.=...-..+++....+ ....+.++.|.+-+|++=
T Consensus 223 ~~~~~~~~~~~~~v~afaGIg~P~rFf~tL~~~g~~~~~~~~FpDH~~f~~~~l~~l~~-~~~~~~Ll~TeKDaVKl~ 299 (336)
T COG1663 223 GERSDVADLKGKRVVAFAGIGNPQRFFATLRNLGIQVVETLAFPDHYDFSAADLEDLAK-KAQADGLLTTEKDAVKLR 299 (336)
T ss_pred ceecchhhcCCceEEEEEecCChHHHHHHHHHcCcceeeeecCCchhhccHHHHHHHHh-hhccceEEeeccceeecc
Confidence 45677778888999999888888999999999998876543332111112344544442 333488999999999853
No 274
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=54.73 E-value=87 Score=26.52 Aligned_cols=79 Identities=19% Similarity=0.077 Sum_probs=48.1
Q ss_pred eEEEeCCCCCh--HHHHHHHH-HCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHH------------HH
Q 026235 52 KVVVTRERGKN--GKLIKALA-KHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG------------SV 116 (241)
Q Consensus 52 ~VLitR~~~~~--~~l~~~L~-~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV------------~~ 116 (241)
+|.|.+-...+ .++..+|+ ..|+++..++.-+ ..+.++|+||+...... ..
T Consensus 2 ~v~Vl~~~G~n~~~d~~~a~~~~~G~~~~~v~~~~--------------~~l~~~D~lvipGG~~~~d~l~~~~~~~~~~ 67 (219)
T PRK03619 2 KVAVIVFPGSNCDRDMARALRDLLGAEPEYVWHKE--------------TDLDGVDAVVLPGGFSYGDYLRCGAIAAFSP 67 (219)
T ss_pred EEEEEecCCcChHHHHHHHHHhcCCCeEEEEecCc--------------CCCCCCCEEEECCCCchhhhhccchhhhchH
Confidence 56666554443 45788998 7899887664311 03467899998875221 12
Q ss_pred HHHHHHhcCCCCcEEEEeCHHHHHHHHHh
Q 026235 117 FLEAWKEAGTPNVRIGVVGAGTASIFEEV 145 (241)
Q Consensus 117 f~~~l~~~~~~~~~i~aIG~~Ta~~L~~~ 145 (241)
+.+.+++....+.++++|.-+. +.|-+.
T Consensus 68 ~~~~l~~~~~~g~~ilgIC~G~-qlLa~~ 95 (219)
T PRK03619 68 IMKAVKEFAEKGKPVLGICNGF-QILTEA 95 (219)
T ss_pred HHHHHHHHHHCCCEEEEECHHH-HHHHHc
Confidence 2222322222578899998875 677776
No 275
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=54.72 E-value=60 Score=28.57 Aligned_cols=69 Identities=20% Similarity=0.186 Sum_probs=43.5
Q ss_pred hHHHHHHHHHCCCcEEEeceEEEeeCCCc-hHHHHHHhcCCCccEEEEeCHH-HHHHHHHHHHhcCCCCcEEEE
Q 026235 62 NGKLIKALAKHRIDCLELPLIQHAQGPDT-DRLSSVLNADTIFDWIIITSPE-AGSVFLEAWKEAGTPNVRIGV 133 (241)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~~~~~~~-~~l~~~l~~l~~~d~IiFTS~~-aV~~f~~~l~~~~~~~~~i~a 133 (241)
...+.+.++++|.++.....+... ..+. ..+.+.. . .+.|+|++.+.. ....|+..+.+.+++...+..
T Consensus 150 ~~~~~~~~~~~G~~v~~~~~~~~~-~~d~~~~~~~i~-~-~~pdaV~~~~~~~~a~~~~~~~~~~G~~~~~~~~ 220 (341)
T cd06341 150 AALLARSLAAAGVSVAGIVVITAT-APDPTPQAQQAA-A-AGADAIITVLDAAVCASVLKAVRAAGLTPKVVLS 220 (341)
T ss_pred HHHHHHHHHHcCCccccccccCCC-CCCHHHHHHHHH-h-cCCCEEEEecChHHHHHHHHHHHHcCCCCCEEEe
Confidence 344677888899887765544432 1233 3344333 2 579999998866 677788888888775433333
No 276
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=54.50 E-value=35 Score=31.10 Aligned_cols=66 Identities=14% Similarity=0.106 Sum_probs=39.7
Q ss_pred CHHHHHHHhhhCCCCccEEEEEccCCCc-----hhHHHHHHhCCCeeeEeeeeeeecCCCChH---HHHHHc--CCCCEE
Q 026235 163 TGKILASELPKNGKKKCTVLYPASAKAS-----NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQ---TVLKQA--LSIPVV 232 (241)
Q Consensus 163 t~e~L~~~l~~~~~~~~~iL~~~g~~~~-----~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~---~~~~~l--~~id~I 232 (241)
..+.+.+.+.+.. .++++++++.... +.+.+.|++.|+++ .+|.........+ +..+.+ .++|+|
T Consensus 10 ~l~~l~~~l~~~~--~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~---~~~~~~~~~p~~~~v~~~~~~~~~~~~d~I 84 (370)
T cd08551 10 AIEKLGEEIKNLG--GRKALIVTDPGLVKTGVLDKVIDSLKEAGIEV---VIFDGVEPNPTLSNVDAAVAAYREEGCDGV 84 (370)
T ss_pred HHHHHHHHHHHcC--CCeEEEEeCcchhhCccHHHHHHHHHHcCCeE---EEECCCCCCCCHHHHHHHHHHHHhcCCCEE
Confidence 4566776666542 3689999886543 37888999888765 3454333222222 333333 478888
Q ss_pred E
Q 026235 233 A 233 (241)
Q Consensus 233 v 233 (241)
+
T Consensus 85 i 85 (370)
T cd08551 85 I 85 (370)
T ss_pred E
Confidence 7
No 277
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=54.46 E-value=20 Score=27.64 Aligned_cols=49 Identities=16% Similarity=0.198 Sum_probs=30.9
Q ss_pred CCCchhHHHHHHhCCCeeeEeeeeeeecCCCChHHHHH----HcCCCCEEEEECCccC
Q 026235 187 AKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLK----QALSIPVVAVASPSAV 240 (241)
Q Consensus 187 ~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~----~l~~id~IvFtSps~v 240 (241)
+...+.|.+.|++.|+++....+- + +..+++.+ .+...|.|+.|..+++
T Consensus 17 d~~~~~l~~~l~~~G~~~~~~~~v---~--Dd~~~I~~~l~~~~~~~dliittGG~g~ 69 (135)
T smart00852 17 DSNGPALAELLTELGIEVTRYVIV---P--DDKEAIKEALREALERADLVITTGGTGP 69 (135)
T ss_pred cCcHHHHHHHHHHCCCeEEEEEEe---C--CCHHHHHHHHHHHHhCCCEEEEcCCCCC
Confidence 445678999999999887655443 2 22322222 2357898888876553
No 278
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=54.42 E-value=1.1e+02 Score=29.31 Aligned_cols=141 Identities=13% Similarity=0.093 Sum_probs=77.0
Q ss_pred eEEEeCC--CCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCH---HHHHHHHHHHHhcCC
Q 026235 52 KVVVTRE--RGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP---EAGSVFLEAWKEAGT 126 (241)
Q Consensus 52 ~VLitR~--~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~---~aV~~f~~~l~~~~~ 126 (241)
.|.+..+ ......+...|++.|+++..... ....+++ ..++.-..++.+|| .+.+++.+.++...
T Consensus 195 ~vnl~G~~~~~~~~~i~~lL~~lGI~v~~~lp-----~~~~~eL----~~~~~~~~~c~~~P~ls~aa~~Le~~~gvp~- 264 (457)
T CHL00073 195 PLVLFGSLPSTVASQLTLELKRQGIKVSGWLP-----SQRYTDL----PSLGEGVYVCGVNPFLSRTATTLMRRRKCKL- 264 (457)
T ss_pred cEEEEEecCcccHHHHHHHHHHcCCeEeEEeC-----CCCHHHH----HhhCcccEEEEcCcchHHHHHHHHHHhCCce-
Confidence 4555544 33467788999999999973211 1122333 24455577777774 44444444333110
Q ss_pred CCcEEEEeCH-HHHHHHHHhhhccCCCCceeecCCCC--CHHHHHHHhhhC--CCCccEEEEEccCCCchhHHHHHHhCC
Q 026235 127 PNVRIGVVGA-GTASIFEEVIQSSKCSLDVAFSPSKA--TGKILASELPKN--GKKKCTVLYPASAKASNEIEEGLSNRG 201 (241)
Q Consensus 127 ~~~~i~aIG~-~Ta~~L~~~~~~~~~Gi~~~~~p~~~--t~e~L~~~l~~~--~~~~~~iL~~~g~~~~~~L~~~L~~~G 201 (241)
-..+ +-+|. .|.+.|++. ..++|+. |+.. --..+.++|... ...|+|+.+..+..-.=-|...|.+.|
T Consensus 265 ~~~P-~PiGi~~Td~fLr~I--a~~~G~~----pe~l~~Er~rl~dal~d~~~~L~GKrvai~Gdp~~~i~LarfL~elG 337 (457)
T CHL00073 265 IGAP-FPIGPDGTRAWIEKI--CSVFGIE----PQGLEEREEQIWESLKDYLDLVRGKSVFFMGDNLLEISLARFLIRCG 337 (457)
T ss_pred eecC-CcCcHHHHHHHHHHH--HHHhCcC----HHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHHCC
Confidence 0122 22775 567777765 2334643 2211 112233444332 135889986644344445899999999
Q ss_pred CeeeEeee
Q 026235 202 FEVVRLNT 209 (241)
Q Consensus 202 ~~V~~~~v 209 (241)
.++..+-.
T Consensus 338 mevV~vgt 345 (457)
T CHL00073 338 MIVYEIGI 345 (457)
T ss_pred CEEEEEEe
Confidence 99887733
No 279
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=54.28 E-value=60 Score=24.89 Aligned_cols=74 Identities=20% Similarity=0.174 Sum_probs=48.5
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCch-HHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCC---CCcEEEEeCHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTD-RLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGAG 137 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~-~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~---~~~~i~aIG~~ 137 (241)
.-+.+.++++|.++............... .....++.. ..|+|+..+......+...+.+.++ .++.+++.|..
T Consensus 29 ~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~pdaii~~~~~~a~~~~~~l~~~g~~vP~di~vv~~~~~ 106 (160)
T PF13377_consen 29 EGFREALKEHGIEFEELIFFSDDDSEDAREAQLLWLRRL-RPDAIICSNDRLALGVLRALRELGIRVPQDISVVSFDDS 106 (160)
T ss_dssp HHHHHHHHHTTSEEEGEEEEESSSHHHHHHHHHHHHHTC-SSSEEEESSHHHHHHHHHHHHHTTSCTTTTSEEEEESSS
T ss_pred HHHHHHHHHCCCCCCeeEeecCCcchhHHHHHHHHHhcC-CCcEEEEcCHHHHHHHHHHHHHcCCcccccccEEEecCc
Confidence 33566888899886654333321111111 111223333 6799999999999999999999876 48999999953
No 280
>PRK01160 hypothetical protein; Provisional
Probab=54.28 E-value=40 Score=28.01 Aligned_cols=106 Identities=14% Similarity=0.039 Sum_probs=61.5
Q ss_pred hHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHHHHHHhhhccCCCCceeec------------
Q 026235 91 DRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFS------------ 158 (241)
Q Consensus 91 ~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~------------ 158 (241)
+.+++.| ...-..+|+.-..... +.. .+. ..+.++++||..|.+.|.++ |+.+++.
T Consensus 9 ~~lR~eL---k~P~G~l~~~~~~~~~-l~~-~~~-~~~~~iitVGDVVT~~ll~~------g~~P~laIvD~kTkR~~~~ 76 (178)
T PRK01160 9 PELRQEL---KKPLGELVRGDIPEPY-LKI-KEE-LEKHPLITVGDVVTENLLRV------GLKPFLAIYDLKTKRREYK 76 (178)
T ss_pred HHHHHHH---hcCCceeEeCCCcchh-hhh-hhh-ccCCcEEEEccHhhHHHHHC------CCCCCEEEEeCccccCCCc
Confidence 3445544 4455677777422111 111 111 23567999999999999999 9887552
Q ss_pred ---------------CCCCCHHHHHHHhhhC---CCCcc-EEEEEccCCCchhHHHHHHhCCCeeeEeeeee
Q 026235 159 ---------------PSKATGKILASELPKN---GKKKC-TVLYPASAKASNEIEEGLSNRGFEVVRLNTYT 211 (241)
Q Consensus 159 ---------------p~~~t~e~L~~~l~~~---~~~~~-~iL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~ 211 (241)
|...=+++++++|.+. ...+. ..+++.|++..-.|+..|- +....+.+|=
T Consensus 77 ~~i~~~~~~~i~V~NPpGtIt~el~~ai~~a~~~~~~~~~~~I~VdGEEDLa~lP~il~---aP~gs~VlYG 145 (178)
T PRK01160 77 PSIFEHEEVSITVRNPPGTITLALLRAIKKAFSLIERGKKVRIEVNGEEDLAVIPAVLY---APLGTVVAYG 145 (178)
T ss_pred cccccccccEEEEECCCCcccHHHHHHHHHHHHhhhcCCeEEEEEcChHHHHHHHHHHh---cCCCCEEEeC
Confidence 1111235666666654 22333 3567778877777777764 2345666664
No 281
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=54.13 E-value=26 Score=28.32 Aligned_cols=18 Identities=28% Similarity=0.403 Sum_probs=13.6
Q ss_pred HHHHHcCCCCEEEEECCc
Q 026235 221 TVLKQALSIPVVAVASPS 238 (241)
Q Consensus 221 ~~~~~l~~id~IvFtSps 238 (241)
++.+.+...|+|+|.||.
T Consensus 61 ~~~~~i~~AD~iIi~tP~ 78 (174)
T TIGR03566 61 RILQAIESADLLVVGSPV 78 (174)
T ss_pred HHHHHHHHCCEEEEECCc
Confidence 445556789999999984
No 282
>PRK11480 tauA taurine transporter substrate binding subunit; Provisional
Probab=54.02 E-value=44 Score=29.72 Aligned_cols=66 Identities=11% Similarity=0.024 Sum_probs=45.2
Q ss_pred cCCCCCCCeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHH
Q 026235 44 ASASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG 114 (241)
Q Consensus 44 ~~~~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV 114 (241)
.-.+|+||+|.++........+...|++.|.+...+- +.... ......++ .-+..|+++...+...
T Consensus 116 s~~DLkGK~Iav~~~s~~~~~l~~~L~~~Gl~~~dv~---~v~~~-~~~~~~Al-~~G~VDAa~~~~p~~~ 181 (320)
T PRK11480 116 KPEDLIGKRIAVPFISTTHYSLLAALKHWGIKPGQVE---IVNLQ-PPAIIAAW-QRGDIDGAYVWAPAVN 181 (320)
T ss_pred ChHHcCCCEEecCCCCchHHHHHHHHHHcCCCHhheE---EEECC-cHHHHHHH-HcCCcCEEEEcchHHH
Confidence 4467899999998776555667888999999876533 33332 23344455 3489999888887643
No 283
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=53.89 E-value=98 Score=25.66 Aligned_cols=78 Identities=17% Similarity=0.119 Sum_probs=44.2
Q ss_pred CeEEEeCC-CCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHH---HH-H---HHHHHHH
Q 026235 51 PKVVVTRE-RGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE---AG-S---VFLEAWK 122 (241)
Q Consensus 51 ~~VLitR~-~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~---aV-~---~f~~~l~ 122 (241)
++|+|.-- ......+++.|+++|+++..++ +.. ++.++|.|+++.+. .. . .+.+.+.
T Consensus 1 ~~~~v~~~~~~~~~~~~~~l~~~G~~~~~~~--------~~~-------~~~~~d~iii~G~~~~~~~~~~~~~~~~~i~ 65 (200)
T PRK13143 1 MMIVIIDYGVGNLRSVSKALERAGAEVVITS--------DPE-------EILDADGIVLPGVGAFGAAMENLSPLRDVIL 65 (200)
T ss_pred CeEEEEECCCccHHHHHHHHHHCCCeEEEEC--------CHH-------HHccCCEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 35555543 3445789999999999877663 111 23589999998731 11 1 1112222
Q ss_pred hcCCCCcEEEEeCHHHHHHHHH
Q 026235 123 EAGTPNVRIGVVGAGTASIFEE 144 (241)
Q Consensus 123 ~~~~~~~~i~aIG~~Ta~~L~~ 144 (241)
+.--.++++++|.-. .+.|-+
T Consensus 66 ~~~~~~~PilgIC~G-~q~l~~ 86 (200)
T PRK13143 66 EAARSGKPFLGICLG-MQLLFE 86 (200)
T ss_pred HHHHcCCCEEEECHH-HHHHhh
Confidence 111246788777655 344443
No 284
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=53.87 E-value=1.3e+02 Score=25.21 Aligned_cols=92 Identities=9% Similarity=0.124 Sum_probs=49.4
Q ss_pred CCccEEEEeCH--HHHHHHHHHHHhcCCCCcEEEEeCHHHHHHHHHhhhccCCCC-ceeecCCCCC-HHHHHHHhhhCCC
Q 026235 101 TIFDWIIITSP--EAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSL-DVAFSPSKAT-GKILASELPKNGK 176 (241)
Q Consensus 101 ~~~d~IiFTS~--~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi-~~~~~p~~~t-~e~L~~~l~~~~~ 176 (241)
..+|.||+.+. .++...++.+.+ .+++++.++.... .. +. ...+.++.+. ...+++.|.+...
T Consensus 59 ~~vDgiii~~~~~~~~~~~i~~~~~---~gIpvV~~d~~~~----~~------~~~~~~V~~d~~~~g~~aa~~l~~~~~ 125 (274)
T cd06311 59 RKIDALVILPFESAPLTQPVAKAKK---AGIFVVVVDRGLS----SP------GAQDLYVAGDNYGMGRVAGEYIATKLG 125 (274)
T ss_pred cCCCEEEEeCCCchhhHHHHHHHHH---CCCeEEEEcCCCC----CC------cccceEEcCCcHHHHHHHHHHHHHHhC
Confidence 57899999864 333333343433 4688888875311 11 11 1123333333 3445566665533
Q ss_pred CccEEEEEccCCCc------hhHHHHHHhCCCeee
Q 026235 177 KKCTVLYPASAKAS------NEIEEGLSNRGFEVV 205 (241)
Q Consensus 177 ~~~~iL~~~g~~~~------~~L~~~L~~~G~~V~ 205 (241)
..++++++.|.... .-+.+.|++.|.++.
T Consensus 126 g~~~i~~~~g~~~~~~~~R~~gf~~~l~~~~~~~~ 160 (274)
T cd06311 126 GNGNIVVLRGIPTPIDNERVDAFDAAIAKYPIKIL 160 (274)
T ss_pred CCCeEEEEECCCCcchhHHHHHHHHHHhhCCcEEE
Confidence 35689988775321 235667777775443
No 285
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=53.73 E-value=41 Score=28.38 Aligned_cols=87 Identities=13% Similarity=0.107 Sum_probs=49.7
Q ss_pred CCeEEEeCCCCC-------hHHHHHHHHHC-CCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHH
Q 026235 50 NPKVVVTRERGK-------NGKLIKALAKH-RIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAW 121 (241)
Q Consensus 50 g~~VLitR~~~~-------~~~l~~~L~~~-G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l 121 (241)
.++|++..+... ..-+.+.++++ |.++................+.+.++...++|+|+.++-.....+...+
T Consensus 122 ~~~i~~l~~~~~~~~~~~R~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~aI~~~~d~~a~g~~~al 201 (270)
T cd06308 122 KGNILEIWGLEGSSPAIERHDGFKEALSKYPKIKIVAQQDGDWLKEKAEEKMEELLQANPDIDLVYAHNDPMALGAYLAA 201 (270)
T ss_pred CceEEEEECCCCCchHHHHHHHHHHHHHHCCCCEEEEecCCCccHHHHHHHHHHHHHhCCCCcEEEeCCcHHHHHHHHHH
Confidence 456766643221 23345567777 7655432111100000013355555444568999988888888888888
Q ss_pred HhcCC-CCcEEEEeCH
Q 026235 122 KEAGT-PNVRIGVVGA 136 (241)
Q Consensus 122 ~~~~~-~~~~i~aIG~ 136 (241)
.+.++ .++.+++.+.
T Consensus 202 ~~~g~~~dv~vvg~d~ 217 (270)
T cd06308 202 KRAGREKEIKFIGIDG 217 (270)
T ss_pred HHcCCCCCcEEEEecC
Confidence 88776 4677777754
No 286
>TIGR01729 taurine_ABC_bnd taurine ABC transporter, periplasmic binding protein. This model identifies a cluster of ABC transporter periplasmic substrate binding proteins, apparently specific for taurine. Transport systems for taurine (NH2-CH2-CH2-SO3H), sulfonates, and sulfate esters import sulfur when sulfate levels are low. The most closely related proteins outside this family are putative aliphatic sulfonate binding proteins (TIGR01728).
Probab=53.52 E-value=48 Score=28.93 Aligned_cols=65 Identities=14% Similarity=0.107 Sum_probs=43.7
Q ss_pred cCCCCCCCeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHH
Q 026235 44 ASASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA 113 (241)
Q Consensus 44 ~~~~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~a 113 (241)
.-.+|+||+|.++.+......+...|+++|.+...+.+.. .. ..+...++ .-+..|+++...+..
T Consensus 94 s~~DLkGK~Igv~~~s~~~~~l~~~L~~~Gl~~~dv~~v~---~~-~~~~~~al-~~G~vDa~~~~~p~~ 158 (300)
T TIGR01729 94 KPEDLKGKNVAVPFVSTTHYSLLAALKHWKTDPREVNILN---LK-PPQIVAAW-QRGDIDAAYVWPPAL 158 (300)
T ss_pred ChhHcCCCEEEeCCCCcHHHHHHHHHHHcCCChhheEEEe---cC-cHHHHHHH-HcCCcCEEEEecHHH
Confidence 3458899999998776656667788999998755443332 22 22333445 348999999888754
No 287
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=53.48 E-value=1.5e+02 Score=26.22 Aligned_cols=73 Identities=11% Similarity=0.030 Sum_probs=36.8
Q ss_pred HHHHHHHhhhCCCCccEEEEEccCCCchhHHHHHHhCCCeeeEeeeeeeecCCCChHHHHHHc-C-CCCEEEEECCc
Q 026235 164 GKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA-L-SIPVVAVASPS 238 (241)
Q Consensus 164 ~e~L~~~l~~~~~~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~l-~-~id~IvFtSps 238 (241)
.+++.-.+.....+|.+|++.....-...+...++..|+++..+.+.... ....+++.+.+ . +.++|+++++.
T Consensus 60 t~al~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~--~~~~~~l~~~i~~~~~~~v~i~~~~ 134 (356)
T cd06451 60 TGAMEAALSNLLEPGDKVLVGVNGVFGDRWADMAERYGADVDVVEKPWGE--AVSPEEIAEALEQHDIKAVTLTHNE 134 (356)
T ss_pred HHHHHHHHHHhCCCCCEEEEecCCchhHHHHHHHHHhCCCeEEeecCCCC--CCCHHHHHHHHhccCCCEEEEeccC
Confidence 44444344333345667777643222222445666777777776653211 11123344334 3 56777777663
No 288
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=53.31 E-value=36 Score=27.43 Aligned_cols=49 Identities=20% Similarity=0.148 Sum_probs=35.8
Q ss_pred HHHHHHhhhCCCCccEEEEEccCC-CchhHHHHHHhCCCeeeEeeeeeee
Q 026235 165 KILASELPKNGKKKCTVLYPASAK-ASNEIEEGLSNRGFEVVRLNTYTTE 213 (241)
Q Consensus 165 e~L~~~l~~~~~~~~~iL~~~g~~-~~~~L~~~L~~~G~~V~~~~vY~~~ 213 (241)
+.+++.+.+...+|+++++..... +-+++.+.|++.|+++..+.-|+.-
T Consensus 120 ~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~~ 169 (179)
T TIGR00537 120 DRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIVAERGLF 169 (179)
T ss_pred HHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEEEEeecC
Confidence 455666656655677777665444 4678999999999999998888653
No 289
>PRK07856 short chain dehydrogenase; Provisional
Probab=53.23 E-value=83 Score=26.39 Aligned_cols=34 Identities=12% Similarity=0.058 Sum_probs=26.6
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEe
Q 026235 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (241)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (241)
.++.||++|||..... ...+++.|.+.|+++..+
T Consensus 2 ~~~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~ 36 (252)
T PRK07856 2 LDLTGRVVLVTGGTRGIGAGIARAFLAAGATVVVC 36 (252)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 3577999999988653 677899999999887543
No 290
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=53.18 E-value=56 Score=29.45 Aligned_cols=61 Identities=18% Similarity=0.146 Sum_probs=39.7
Q ss_pred CCccEEEEEccCCCchh--HHHHHHhCCCeeeEeeeeeeecCCCChHHHHHHc-CCCCEEEEECCc
Q 026235 176 KKKCTVLYPASAKASNE--IEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA-LSIPVVAVASPS 238 (241)
Q Consensus 176 ~~~~~iL~~~g~~~~~~--L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~l-~~id~IvFtSps 238 (241)
.++.+|++...+..... +...-+..|++|..+.+......+ .+++.+.+ .+.+.|+|+-.+
T Consensus 86 ~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~v~~i~~~~~~~~~--~~~~~~~l~~~~~lv~~~~~~ 149 (371)
T PF00266_consen 86 KPGDEVLVTSNEHPSNRYPWEEIAKRKGAEVRVIPADPGGSLD--LEDLEEALNPDTRLVSISHVE 149 (371)
T ss_dssp TTTCEEEEEESSHHHHHHHHHHHHHHTTEEEEEEEEGTTSSCS--HHHHHHHHHTTESEEEEESBE
T ss_pred ccccccccccccccccccccccccccchhhhccccccccchhh--hhhhhhhhccccceEEeeccc
Confidence 45678888877765544 444555789999888775443332 34444445 788888888654
No 291
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=53.17 E-value=1.4e+02 Score=25.32 Aligned_cols=155 Identities=16% Similarity=0.153 Sum_probs=88.2
Q ss_pred CeEEEeCCCCChHHHHHHHHHCCCcEEEec---------------eEEEeeCC-CchHHHHHHhcCCCccEEEEeCHH-H
Q 026235 51 PKVVVTRERGKNGKLIKALAKHRIDCLELP---------------LIQHAQGP-DTDRLSSVLNADTIFDWIIITSPE-A 113 (241)
Q Consensus 51 ~~VLitR~~~~~~~l~~~L~~~G~~v~~~P---------------~~~~~~~~-~~~~l~~~l~~l~~~d~IiFTS~~-a 113 (241)
|+|+|.....-+..+++.|.+.|.++.-+- ..-+.... +.+.|.++ .+.++|.++..+.+ -
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~a--gi~~aD~vva~t~~d~ 78 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEA--GIDDADAVVAATGNDE 78 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhc--CCCcCCEEEEeeCCCH
Confidence 456666555556677777777776655331 11111111 22223322 45799999998888 4
Q ss_pred HHHHHHHHHh--cCCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCC-------CC-ccEEEE
Q 026235 114 GSVFLEAWKE--AGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG-------KK-KCTVLY 183 (241)
Q Consensus 114 V~~f~~~l~~--~~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~-------~~-~~~iL~ 183 (241)
+..++-.+.. .+.+.+-+=+-.+.-.+.+++. |+...+.|+......+.+.+.... .. +..++.
T Consensus 79 ~N~i~~~la~~~~gv~~viar~~~~~~~~~~~~~------g~~~ii~Pe~~~~~~l~~~i~~p~~~~~~~~~~~~~~~~~ 152 (225)
T COG0569 79 VNSVLALLALKEFGVPRVIARARNPEHEKVLEKL------GADVIISPEKLAAKRLARLIVTPGALDVLELAGGDAEVIE 152 (225)
T ss_pred HHHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHc------CCcEEECHHHHHHHHHHHHhcCCChheEEeecCCcceEEE
Confidence 4444443332 3556666666777788889998 988878888777777877765432 11 122222
Q ss_pred EccCC----CchhHHHHHHhCCCeeeEeeeeeee
Q 026235 184 PASAK----ASNEIEEGLSNRGFEVVRLNTYTTE 213 (241)
Q Consensus 184 ~~g~~----~~~~L~~~L~~~G~~V~~~~vY~~~ 213 (241)
..-.. .+..|.+.=-.....+.-+.+|+..
T Consensus 153 ~~v~~~~~~~g~~L~el~~~~~~~~~vvai~r~~ 186 (225)
T COG0569 153 EKVAEDSPLAGKTLRELDLRLPYDVNVIAIKRGG 186 (225)
T ss_pred EEecCCCccCCcCHHHhcccCCCCcEEEEEecCC
Confidence 22222 2233333221223567788889875
No 292
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=53.16 E-value=1e+02 Score=25.60 Aligned_cols=73 Identities=16% Similarity=0.073 Sum_probs=40.8
Q ss_pred HHHHHHHCCCcEEEeceEEEeeCC-C-chHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCC---CCcEEEEeCHH
Q 026235 65 LIKALAKHRIDCLELPLIQHAQGP-D-TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGAG 137 (241)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~-~-~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~---~~~~i~aIG~~ 137 (241)
+.+.++++|.++.....+...... . ...+.+.+.....+|+|+.+|-.....+...+.+.++ .++.+++.+..
T Consensus 138 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~~l~~~g~~vp~di~v~g~d~~ 215 (269)
T cd06288 138 YRQALAEAGIPFDPDLVVHGDWSADDGYEAAAALLDLDDRPTAIFCGNDRMAMGAYQALLERGLRIPQDVSVVGFDNQ 215 (269)
T ss_pred HHHHHHHcCCCCCHHHeEeCCCChHHHHHHHHHHHhCCCCCCEEEEeCcHHHHHHHHHHHHcCCCCcccceEEeeCCc
Confidence 455666777654322122111110 1 1334455544356889988888777777777777765 35667776643
No 293
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=53.00 E-value=20 Score=26.49 Aligned_cols=46 Identities=24% Similarity=0.249 Sum_probs=25.7
Q ss_pred CCceeecCCCC-CHHHHHHHhhhCCCCccEEEEEccCCCchhHHHHHHhCCCe
Q 026235 152 SLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFE 203 (241)
Q Consensus 152 Gi~~~~~p~~~-t~e~L~~~l~~~~~~~~~iL~~~g~~~~~~L~~~L~~~G~~ 203 (241)
|+.+.. -+-. +.....+.|.+.. .+++++++ +.+.+.+.|++.|++
T Consensus 55 Gi~~~~-~~i~ts~~~~~~~l~~~~-~~~~v~vl----G~~~l~~~l~~~G~e 101 (101)
T PF13344_consen 55 GIPVDE-DEIITSGMAAAEYLKEHK-GGKKVYVL----GSDGLREELREAGFE 101 (101)
T ss_dssp TTT--G-GGEEEHHHHHHHHHHHHT-TSSEEEEE----S-HHHHHHHHHTTEE
T ss_pred CcCCCc-CEEEChHHHHHHHHHhcC-CCCEEEEE----cCHHHHHHHHHcCCC
Confidence 776422 1122 3355556666542 35788877 344788888888753
No 294
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=52.71 E-value=1.1e+02 Score=26.91 Aligned_cols=158 Identities=12% Similarity=0.089 Sum_probs=87.4
Q ss_pred CCCCCCeEEEeCCCCCh---HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEE---EeCHHHHHHHHH
Q 026235 46 ASNSNPKVVVTRERGKN---GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII---ITSPEAGSVFLE 119 (241)
Q Consensus 46 ~~l~g~~VLitR~~~~~---~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~Ii---FTS~~aV~~f~~ 119 (241)
.-|.|||+||+.-...+ =-+++.|.++|++...- |.-+.+ ..++.+..+.++. ++|+ .|+-..++..++
T Consensus 2 g~L~GK~~lI~Gvan~rSIAwGIAk~l~~~GAeL~fT--y~~e~l--~krv~~la~~~~s-~~v~~cDV~~d~~i~~~f~ 76 (259)
T COG0623 2 GLLEGKRILIMGVANNRSIAWGIAKALAEQGAELAFT--YQGERL--EKRVEELAEELGS-DLVLPCDVTNDESIDALFA 76 (259)
T ss_pred CccCCceEEEEEecccccHHHHHHHHHHHcCCEEEEE--eccHHH--HHHHHHHHhhccC-CeEEecCCCCHHHHHHHHH
Confidence 35789999999765443 34789999999998743 222211 2233333333332 4443 478889999999
Q ss_pred HHHhcC-CCCcEEEEeCHHHHHHHHHh-hhccCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEccCCC--------
Q 026235 120 AWKEAG-TPNVRIGVVGAGTASIFEEV-IQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------- 189 (241)
Q Consensus 120 ~l~~~~-~~~~~i~aIG~~Ta~~L~~~-~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~~~~~~iL~~~g~~~-------- 189 (241)
.+++.. .-+.-+-|||=.-++.|..- +.-+.=|+.....-..|+--.|++........|..++-+..-.+
T Consensus 77 ~i~~~~g~lD~lVHsIaFa~k~el~G~~~dtsre~f~~a~~IS~YS~~~lak~a~~lM~~ggSiltLtYlgs~r~vPnYN 156 (259)
T COG0623 77 TIKKKWGKLDGLVHSIAFAPKEELKGDYLDTSREGFLIAMDISAYSFTALAKAARPLMNNGGSILTLTYLGSERVVPNYN 156 (259)
T ss_pred HHHHhhCcccEEEEEeccCChHHhCCcccccCHHHHHhHhhhhHhhHHHHHHHHHHhcCCCCcEEEEEeccceeecCCCc
Confidence 887752 23566777887766666422 00000011110111234555566555555445566665544332
Q ss_pred ------------chhHHHHHHhCCCeeeEee
Q 026235 190 ------------SNEIEEGLSNRGFEVVRLN 208 (241)
Q Consensus 190 ------------~~~L~~~L~~~G~~V~~~~ 208 (241)
-..|...|=++|++|..+.
T Consensus 157 vMGvAKAaLEasvRyLA~dlG~~gIRVNaIS 187 (259)
T COG0623 157 VMGVAKAALEASVRYLAADLGKEGIRVNAIS 187 (259)
T ss_pred hhHHHHHHHHHHHHHHHHHhCccCeEEeeec
Confidence 1245556666777776653
No 295
>PRK12827 short chain dehydrogenase; Provisional
Probab=52.58 E-value=86 Score=25.87 Aligned_cols=32 Identities=22% Similarity=0.287 Sum_probs=25.2
Q ss_pred CCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEe
Q 026235 48 NSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (241)
Q Consensus 48 l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (241)
+.+++||||..... ...+++.|.++|+++..+
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~g~~v~~~ 36 (249)
T PRK12827 4 LDSRRVLITGGSGGLGRAIAVRLAADGADVIVL 36 (249)
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCeEEEE
Confidence 56799999987643 677889999999987653
No 296
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=52.57 E-value=1.4e+02 Score=27.43 Aligned_cols=105 Identities=12% Similarity=0.073 Sum_probs=70.3
Q ss_pred hHHHHHHHHHCCCcEEEeceEEEeeCCC-chHHHHHHhcC--CCccEEEEeCHHHHHHHHHHHHhcCC-CCcEEEEeCHH
Q 026235 62 NGKLIKALAKHRIDCLELPLIQHAQGPD-TDRLSSVLNAD--TIFDWIIITSPEAGSVFLEAWKEAGT-PNVRIGVVGAG 137 (241)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~~~~~~-~~~l~~~l~~l--~~~d~IiFTS~~aV~~f~~~l~~~~~-~~~~i~aIG~~ 137 (241)
-.+..+.+.++|.+++.. +.+-..++ .+.+.+.++.+ -+.|.||+.-+..+....+..++..+ -++..-+--..
T Consensus 51 l~e~i~~ah~~gkk~~V~--~N~~~~~~~~~~~~~~l~~l~e~GvDaviv~Dpg~i~l~~e~~p~l~ih~S~q~~v~N~~ 128 (347)
T COG0826 51 LAEAVELAHSAGKKVYVA--VNTLLHNDELETLERYLDRLVELGVDAVIVADPGLIMLARERGPDLPIHVSTQANVTNAE 128 (347)
T ss_pred HHHHHHHHHHcCCeEEEE--eccccccchhhHHHHHHHHHHHcCCCEEEEcCHHHHHHHHHhCCCCcEEEeeeEecCCHH
Confidence 355666778888876643 33333222 23233333322 57999999999998876665433211 15666677889
Q ss_pred HHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhC
Q 026235 138 TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (241)
Q Consensus 138 Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~ 174 (241)
|++.+.+. |..-.+.|..-+.+.+.+...+.
T Consensus 129 ~~~f~~~~------G~~rvVl~rEls~~ei~~i~~~~ 159 (347)
T COG0826 129 TAKFWKEL------GAKRVVLPRELSLEEIKEIKEQT 159 (347)
T ss_pred HHHHHHHc------CCEEEEeCccCCHHHHHHHHHhC
Confidence 99999999 98877888888889998777654
No 297
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=52.36 E-value=1.2e+02 Score=25.32 Aligned_cols=44 Identities=14% Similarity=0.130 Sum_probs=27.3
Q ss_pred HHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHH
Q 026235 93 LSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAG 137 (241)
Q Consensus 93 l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~ 137 (241)
+.+.++.-.+.|+|+..+-. ...+...+.+.+++...+++.|..
T Consensus 176 ~~~~l~~~~~~~~i~~~~d~-A~g~~~al~~~g~~~p~v~g~d~~ 219 (272)
T cd06300 176 VADFLASNPDVDGIWTQGGD-AVGAVQAFEQAGRDIPPVTGEDEN 219 (272)
T ss_pred HHHHHHhCCCcCEEEecCCC-cHHHHHHHHHcCCCCcEEEeeCCc
Confidence 34444333457888887777 666777777777644455666544
No 298
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=52.27 E-value=1.3e+02 Score=27.79 Aligned_cols=77 Identities=13% Similarity=0.037 Sum_probs=45.3
Q ss_pred CCCCHHHHHHHhhhCCCCccEEEEEccCCCchhHHHHHHhCCCeeeEeeeeeee-cCCCChHHHHHHc-CCCCEEEEECC
Q 026235 160 SKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTE-PVHHVDQTVLKQA-LSIPVVAVASP 237 (241)
Q Consensus 160 ~~~t~e~L~~~l~~~~~~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~-~~~~~~~~~~~~l-~~id~IvFtSp 237 (241)
.....++|.-.+.....+|..|+++.-. =+......+-.|+++..+.++... .-....+++.+.+ .+..+|++.||
T Consensus 95 t~Ga~~al~~~~~a~~~pGDeVlip~P~--Y~~y~~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i~~ktk~i~ln~P 172 (393)
T COG0436 95 TAGAKEALFLAFLALLNPGDEVLIPDPG--YPSYEAAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAITPKTKAIILNSP 172 (393)
T ss_pred eCCHHHHHHHHHHHhcCCCCEEEEeCCC--CcCHHHHHHhcCCEEEEEeCCcCccCCcCCHHHHHhhcCccceEEEEeCC
Confidence 3456677776666665566777777542 334556666677787777775432 1111123333333 45677888887
Q ss_pred c
Q 026235 238 S 238 (241)
Q Consensus 238 s 238 (241)
.
T Consensus 173 ~ 173 (393)
T COG0436 173 N 173 (393)
T ss_pred C
Confidence 5
No 299
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=52.25 E-value=15 Score=29.33 Aligned_cols=49 Identities=16% Similarity=0.190 Sum_probs=32.7
Q ss_pred hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcC-C--CccEEEEeCHHHH
Q 026235 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD-T--IFDWIIITSPEAG 114 (241)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l-~--~~d~IiFTS~~aV 114 (241)
..-+.+.|++.|+++....... ++.+.+.+.+++. . .+|.||.|-..++
T Consensus 22 ~~~l~~~l~~~G~~v~~~~~v~----Dd~~~i~~~l~~~~~~~~~DlVittGG~s~ 73 (152)
T cd00886 22 GPALVELLEEAGHEVVAYEIVP----DDKDEIREALIEWADEDGVDLILTTGGTGL 73 (152)
T ss_pred HHHHHHHHHHcCCeeeeEEEcC----CCHHHHHHHHHHHHhcCCCCEEEECCCcCC
Confidence 4468888999999877654432 3445566655432 3 6898888876664
No 300
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=52.20 E-value=25 Score=25.33 Aligned_cols=36 Identities=22% Similarity=0.471 Sum_probs=25.7
Q ss_pred CCchhHHHHHHhCCCeeeEeeeeeeecCCCChHHHHHHcCCCCEEEEEC
Q 026235 188 KASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVAS 236 (241)
Q Consensus 188 ~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~l~~id~IvFtS 236 (241)
.+...+.+.|+++|++|..+.-+. .+..+|+++.|-
T Consensus 8 ~~Ls~v~~~L~~~GyeVv~l~~~~-------------~~~~~daiVvtG 43 (80)
T PF03698_consen 8 EGLSNVKEALREKGYEVVDLENEQ-------------DLQNVDAIVVTG 43 (80)
T ss_pred CCchHHHHHHHHCCCEEEecCCcc-------------ccCCcCEEEEEC
Confidence 456789999999999998876322 124677777663
No 301
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=52.17 E-value=1.5e+02 Score=28.26 Aligned_cols=139 Identities=13% Similarity=0.044 Sum_probs=72.8
Q ss_pred ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhc-CCCCcEEEEeC-HHH
Q 026235 61 KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA-GTPNVRIGVVG-AGT 138 (241)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~-~~~~~~i~aIG-~~T 138 (241)
.-.++.+.|++.|+++..... .....+++ ...+....-+..++..-..+.+.|++. +.+-+...-+| ..|
T Consensus 205 d~~elk~lL~~~Gl~v~~~~~----~~~s~eei----~~~~~A~lniv~~~~~~~~~A~~L~erfGiP~~~~~p~G~~~T 276 (475)
T PRK14478 205 ELWQVKPLLDRLGIRVVACIT----GDARYDDV----ASAHRARANMMVCSGAMINLARKMEERYGIPFFEGSFYGIEDT 276 (475)
T ss_pred CHHHHHHHHHHcCCeEEEEcC----CCCCHHHH----HhcccCcEEEEEcHHHHHHHHHHHHHHhCCCEEecCCCcHHHH
Confidence 446899999999999884221 11122333 245556654444444445556666653 44422221255 356
Q ss_pred HHHHHHhhhccCCCCceeecCCC--CCH--------HHHHHHhhhC--CCCccEEEEEccCCCchhHHHHHHhCCCeeeE
Q 026235 139 ASIFEEVIQSSKCSLDVAFSPSK--ATG--------KILASELPKN--GKKKCTVLYPASAKASNEIEEGLSNRGFEVVR 206 (241)
Q Consensus 139 a~~L~~~~~~~~~Gi~~~~~p~~--~t~--------e~L~~~l~~~--~~~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~ 206 (241)
.+.|++.. .++|-+. .++. ... +.+.+.|... ...|+++.+..+....-.|...|.+.|.+|..
T Consensus 277 ~~~l~~la--~~~~~~~--~~~~~~~~~e~~i~~e~~~~~~~l~~~~~~l~Gk~vaI~~~~~~~~~la~~l~ElGm~v~~ 352 (475)
T PRK14478 277 SDSLRQIA--RLLVERG--ADAELVERTEALIAEEEAKAWAALEPYRPRLEGKRVLLYTGGVKSWSVVKALQELGMEVVG 352 (475)
T ss_pred HHHHHHHH--HHHhhcC--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCCchHHHHHHHHHHCCCEEEE
Confidence 77777762 1111000 1110 001 1122233221 13578988875543233588899999999988
Q ss_pred eeeee
Q 026235 207 LNTYT 211 (241)
Q Consensus 207 ~~vY~ 211 (241)
+.++.
T Consensus 353 ~~~~~ 357 (475)
T PRK14478 353 TSVKK 357 (475)
T ss_pred EEEEC
Confidence 87664
No 302
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=52.16 E-value=52 Score=27.52 Aligned_cols=74 Identities=15% Similarity=0.042 Sum_probs=42.2
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCC--chHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCC---CCcEEEEeCH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGA 136 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~--~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~---~~~~i~aIG~ 136 (241)
.-+.+.|+++|.++.....+......+ .+.+.+.++.....|+|+.++......++..+.+.++ +++.+++++.
T Consensus 137 ~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~~~~a~~~~~~l~~~g~~~p~~i~vig~d~ 215 (268)
T cd06273 137 AGVRAALAEAGLELPELWQVEAPYSIADGRAALRQLLEQPPRPTAVICGNDVLALGALYEARRLGLSVPEDLSIVGFDD 215 (268)
T ss_pred HHHHHHHHHcCCCCCHHHeeeCCCcHHHHHHHHHHHHcCCCCCCEEEEcChHHHHHHHHHHHHcCCCCCCceEEEecCC
Confidence 335567777776543322222111111 1234444433356899999888877777777877765 3566666664
No 303
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=51.93 E-value=1.8e+02 Score=27.73 Aligned_cols=144 Identities=12% Similarity=0.030 Sum_probs=75.7
Q ss_pred ChHHHHHHHHHCCCcEEEeceEEEeeC----------CCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHh-cCCCCc
Q 026235 61 KNGKLIKALAKHRIDCLELPLIQHAQG----------PDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE-AGTPNV 129 (241)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~P~~~~~~~----------~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~-~~~~~~ 129 (241)
+-.++.+.|++.|+++..+|-+.+-.. .....+++ +...+....-|..+...-....+.+++ .+.+-.
T Consensus 183 D~~elk~lL~~~Gl~v~~l~d~~s~d~~~~~~~~~~~~gg~tlee-i~~~~~A~lniv~~~~~g~~~A~~Lee~~giP~~ 261 (461)
T TIGR02931 183 DVKELKHLLEEMDIEANVLFEIESFDSPLMPDKSAVSHGSTTIED-LTDTANAKGTIALNRYEGMKAADYLQKKFDVPAI 261 (461)
T ss_pred hHHHHHHHHHHcCCceEEeeccccccCCCCCcccccCCCCCcHHH-HHhhccCcEEEEEcHhhHHHHHHHHHHHhCCCee
Confidence 458899999999999998876531000 00112222 334555556555555433455666654 344322
Q ss_pred EE-EEeCH-HHHHHHHHhhhccCCCCceeecCCCCC--HHHHHHHhhh---CCCCccEEEEEccCCCchhHHHHHHhCCC
Q 026235 130 RI-GVVGA-GTASIFEEVIQSSKCSLDVAFSPSKAT--GKILASELPK---NGKKKCTVLYPASAKASNEIEEGLSNRGF 202 (241)
Q Consensus 130 ~i-~aIG~-~Ta~~L~~~~~~~~~Gi~~~~~p~~~t--~e~L~~~l~~---~~~~~~~iL~~~g~~~~~~L~~~L~~~G~ 202 (241)
.+ .-+|- .|.+.|++.. .++|... |+... -+.+.+.+.+ ....|+|+.+..+..-.-.+.+.|.+.|.
T Consensus 262 ~~~~piGi~~T~~fl~~l~--~~~g~~~---~e~i~~er~~~~~~~~d~~~~~l~Gkrvai~~~~~~~~~l~~~l~elGm 336 (461)
T TIGR02931 262 IGPTPIGIRNTDTFLQNLK--KMTGKPI---PESLVKERGIAIDAIADLTHMFLADKRVAIYGNPDLVIGLAEFCLDLEM 336 (461)
T ss_pred ccCCCcchHHHHHHHHHHH--HHHCCCC---CHHHHHHHHHHHHHHHhhhhHHhCCCeEEEEeCHHHHHHHHHHHHHCCC
Confidence 22 34553 4555565541 2236432 21111 1123444433 12357888776543333457888889999
Q ss_pred eeeEeeee
Q 026235 203 EVVRLNTY 210 (241)
Q Consensus 203 ~V~~~~vY 210 (241)
.+.-+.+.
T Consensus 337 ~~~~~~~~ 344 (461)
T TIGR02931 337 KPVLLLLG 344 (461)
T ss_pred EEEEEEEC
Confidence 88765544
No 304
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=51.76 E-value=28 Score=29.12 Aligned_cols=20 Identities=15% Similarity=0.223 Sum_probs=15.6
Q ss_pred hHHHHHHcCCCCEEEEECCc
Q 026235 219 DQTVLKQALSIPVVAVASPS 238 (241)
Q Consensus 219 ~~~~~~~l~~id~IvFtSps 238 (241)
.+++.+.+.+.|+|||-||-
T Consensus 66 ~~~i~~~l~~aD~iI~gsPv 85 (207)
T COG0655 66 MNEIYEKLLEADGIIFGSPV 85 (207)
T ss_pred HHHHHHHHHHCCEEEEeCCe
Confidence 35566667789999999994
No 305
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=51.65 E-value=6.3 Score=32.57 Aligned_cols=47 Identities=23% Similarity=0.284 Sum_probs=31.9
Q ss_pred hhHHHHHHhCC-CeeeEeeeeeeecCCCCh---------------H---HH-HHHcCCCCEEEEECCc
Q 026235 191 NEIEEGLSNRG-FEVVRLNTYTTEPVHHVD---------------Q---TV-LKQALSIPVVAVASPS 238 (241)
Q Consensus 191 ~~L~~~L~~~G-~~V~~~~vY~~~~~~~~~---------------~---~~-~~~l~~id~IvFtSps 238 (241)
+.+.+.|++.| .+|..+.+|+. ..+... . .. .+.+...|.|||..|.
T Consensus 22 ~~~~~~~~~~~~~~v~~~dL~~~-~~p~l~~~~~~~~~~~~~~~~~d~~~~~~~~l~~AD~iV~~~Pl 88 (199)
T PF02525_consen 22 DAFLEGLQEAGPHEVEIRDLYEE-FLPVLDSECFAAFRTYEQGPAIDVQSEQIEELLWADHIVFAFPL 88 (199)
T ss_dssp HHHHHHHHHHTTSEEEEEETTTT-T--SSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHSSEEEEEEEE
T ss_pred HHHHHHHHHcCCCEEEEEECccc-ccccchHHHHHhhhhhhhhhhhhHHHHHHHHHHHcCcceEeccc
Confidence 46778899999 89999999997 222111 0 01 2445689999998873
No 306
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=51.61 E-value=33 Score=26.00 Aligned_cols=69 Identities=14% Similarity=0.117 Sum_probs=34.2
Q ss_pred CeEEEeCCCCC------hHHHHHHHHHCCCcEEEeceEEEeeCC-CchHHHHHHhcCCCccEEEEeCHHHHHHHHH
Q 026235 51 PKVVVTRERGK------NGKLIKALAKHRIDCLELPLIQHAQGP-DTDRLSSVLNADTIFDWIIITSPEAGSVFLE 119 (241)
Q Consensus 51 ~~VLitR~~~~------~~~l~~~L~~~G~~v~~~P~~~~~~~~-~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~ 119 (241)
+.|+..||... ...+.+..+++|...+++|+-.-.... +...+.+.++...+.=++-.-|.+=+..+..
T Consensus 29 ktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~~~~Pvl~hC~sG~Ra~~l~~ 104 (110)
T PF04273_consen 29 KTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADALESLPKPVLAHCRSGTRASALWA 104 (110)
T ss_dssp -EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TTT--HHHHHHHHHHHHTTTTSEEEE-SCSHHHHHHHH
T ss_pred cEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHHhCCCCEEEECCCChhHHHHHH
Confidence 67888898732 234678889999999999988643221 1234555555555554444445554444443
No 307
>COG0715 TauA ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism]
Probab=51.57 E-value=42 Score=29.64 Aligned_cols=64 Identities=23% Similarity=0.136 Sum_probs=46.0
Q ss_pred CCCCCCCeEEEeCCCC-ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHH
Q 026235 45 SASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA 113 (241)
Q Consensus 45 ~~~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~a 113 (241)
-.+++||+|-++++.. ..--+...|++.|.+...+.+..+-+ ..+...+ ..+.+|+.+..=|..
T Consensus 131 ~adlkGk~vg~~~~~~~~~~~l~~~L~~~Gl~~~dv~~v~~~~----~~~~~al-~~g~vda~~~~ep~~ 195 (335)
T COG0715 131 VADLKGKKVGVPFGGSTSDFLLRYALAKAGLDPDDVELVNLPP----ADAVAAL-AAGQVDAFVVWEPWN 195 (335)
T ss_pred ccCCCCceEEEeCCCchHHHHHHHHHHHcCCCcccceEEeeCc----HHHHHHH-hcCCcceEEecCCch
Confidence 4788999999999986 77889999999999999888444332 2334445 347888755444443
No 308
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=51.41 E-value=62 Score=29.73 Aligned_cols=66 Identities=20% Similarity=0.141 Sum_probs=40.3
Q ss_pred CCHHHHHHHhhhCCCCccEEEEEccCCC--c----hhHHHHHHhCCCeeeEeeeeeeecCCCChHHHH---HHc--CCCC
Q 026235 162 ATGKILASELPKNGKKKCTVLYPASAKA--S----NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVL---KQA--LSIP 230 (241)
Q Consensus 162 ~t~e~L~~~l~~~~~~~~~iL~~~g~~~--~----~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~---~~l--~~id 230 (241)
...+.+.+.+.+. ++|+|++++... . +.+.+.|++.|+++ .+|.-+.+....+.+. +.. .++|
T Consensus 12 g~l~~l~~~~~~~---g~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~---~~~~~v~~~p~~~~v~~~~~~~~~~~~D 85 (380)
T cd08185 12 GKLNELGEEALKP---GKKALIVTGNGSSKKTGYLDRVIELLKQAGVEV---VVFDKVEPNPTTTTVMEGAALAREEGCD 85 (380)
T ss_pred CHHHHHHHHHHhc---CCeEEEEeCCCchhhccHHHHHHHHHHHcCCeE---EEeCCccCCCCHHHHHHHHHHHHHcCCC
Confidence 3456666666552 379999998654 1 46888898888765 4554444333333232 222 5789
Q ss_pred EEE
Q 026235 231 VVA 233 (241)
Q Consensus 231 ~Iv 233 (241)
+|+
T Consensus 86 ~Ii 88 (380)
T cd08185 86 FVV 88 (380)
T ss_pred EEE
Confidence 887
No 309
>PRK06125 short chain dehydrogenase; Provisional
Probab=51.31 E-value=1.2e+02 Score=25.60 Aligned_cols=32 Identities=13% Similarity=0.059 Sum_probs=23.5
Q ss_pred CCCCCeEEEeCCCC-ChHHHHHHHHHCCCcEEE
Q 026235 47 SNSNPKVVVTRERG-KNGKLIKALAKHRIDCLE 78 (241)
Q Consensus 47 ~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~ 78 (241)
.+.|+++||+.... -...+++.|.++|++|..
T Consensus 4 ~~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~ 36 (259)
T PRK06125 4 HLAGKRVLITGASKGIGAAAAEAFAAEGCHLHL 36 (259)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEE
Confidence 45688899998753 366788888888887654
No 310
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=51.30 E-value=83 Score=26.46 Aligned_cols=33 Identities=21% Similarity=0.189 Sum_probs=26.3
Q ss_pred CCCCCeEEEeCCC---CChHHHHHHHHHCCCcEEEe
Q 026235 47 SNSNPKVVVTRER---GKNGKLIKALAKHRIDCLEL 79 (241)
Q Consensus 47 ~l~g~~VLitR~~---~~~~~l~~~L~~~G~~v~~~ 79 (241)
+++|++||||... .-...+++.|.++|+++..+
T Consensus 2 ~l~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~ 37 (256)
T PRK12748 2 PLMKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFT 37 (256)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEE
Confidence 5678999999875 35778999999999887654
No 311
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=51.27 E-value=1.2e+02 Score=28.04 Aligned_cols=113 Identities=13% Similarity=0.114 Sum_probs=57.5
Q ss_pred CeEEEeCCCCChHHHHHHHHHCCCcEEEece-------------EEEeeCC--CchHHHHHHhcCCCccEEEEeCHHHHH
Q 026235 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPL-------------IQHAQGP--DTDRLSSVLNADTIFDWIIITSPEAGS 115 (241)
Q Consensus 51 ~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~-------------~~~~~~~--~~~~l~~~l~~l~~~d~IiFTS~~aV~ 115 (241)
|+|+|.....-+..+.+.|.+.|.++..+.- +++...+ +...+.+. .+.++|.++.++++-..
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~--~~~~a~~vi~~~~~~~~ 78 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREA--GAEDADLLIAVTDSDET 78 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHc--CCCcCCEEEEecCChHH
Confidence 3566665555556666667666666554311 1111111 11222221 35789999998776443
Q ss_pred HHH-HH-HHhcCCCCcEEEEe--CHHH--HHHH---HHhhhccCCCCceeecCCCCCHHHHHHHhh
Q 026235 116 VFL-EA-WKEAGTPNVRIGVV--GAGT--ASIF---EEVIQSSKCSLDVAFSPSKATGKILASELP 172 (241)
Q Consensus 116 ~f~-~~-l~~~~~~~~~i~aI--G~~T--a~~L---~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~ 172 (241)
... .. ++.. .+..++++. .... ...+ ++. |....+.|..-.+..|...+.
T Consensus 79 n~~~~~~~r~~-~~~~~ii~~~~~~~~~~~~~l~~~~~~------G~~~vi~p~~~~a~~l~~~l~ 137 (453)
T PRK09496 79 NMVACQIAKSL-FGAPTTIARVRNPEYAEYDKLFSKEAL------GIDLLISPELLVAREIARLIE 137 (453)
T ss_pred HHHHHHHHHHh-cCCCeEEEEECCccccchhhhhhhhcC------CccEEECHHHHHHHHHHHHhc
Confidence 332 22 2222 134445543 2222 2333 566 887766676666677776654
No 312
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=50.98 E-value=61 Score=26.33 Aligned_cols=68 Identities=18% Similarity=0.080 Sum_probs=43.9
Q ss_pred CCHHHHHHHhhhCC--CCccEEEEE-ccCCCchhHHHHHHhCCCeeeEeeeeeeecCCCChHHHHHHcCCCCEEEEECC
Q 026235 162 ATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASP 237 (241)
Q Consensus 162 ~t~e~L~~~l~~~~--~~~~~iL~~-~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~l~~id~IvFtSp 237 (241)
-|+.++++.|..+. ..|++++++ +|.....-|...|.++|++|+.+.-|.. ++.+.+.+.|+|+-..+
T Consensus 18 cTp~aii~lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~--------~l~~~~~~ADIVVsa~G 88 (160)
T PF02882_consen 18 CTPLAIIELLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTK--------NLQEITRRADIVVSAVG 88 (160)
T ss_dssp HHHHHHHHHHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSS--------SHHHHHTTSSEEEE-SS
T ss_pred CCHHHHHHHHHhcCCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCC--------cccceeeeccEEeeeec
Confidence 48889998887653 467787666 4444556689999999999988877741 12223467788776554
No 313
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=50.96 E-value=19 Score=28.37 Aligned_cols=50 Identities=14% Similarity=0.199 Sum_probs=34.9
Q ss_pred ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcC-CCccEEEEeCHHHH
Q 026235 61 KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD-TIFDWIIITSPEAG 114 (241)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l-~~~d~IiFTS~~aV 114 (241)
....+...|++.|+++....... ++.+.+.+.+++. ..+|.||.|...++
T Consensus 28 n~~~l~~~l~~~G~~v~~~~~v~----Dd~~~i~~~l~~~~~~~DliIttGG~g~ 78 (144)
T TIGR00177 28 NGPLLAALLEEAGFNVSRLGIVP----DDPEEIREILRKAVDEADVVLTTGGTGV 78 (144)
T ss_pred cHHHHHHHHHHCCCeEEEEeecC----CCHHHHHHHHHHHHhCCCEEEECCCCCC
Confidence 35678889999998887654432 3445566666433 57999999987775
No 314
>TIGR01729 taurine_ABC_bnd taurine ABC transporter, periplasmic binding protein. This model identifies a cluster of ABC transporter periplasmic substrate binding proteins, apparently specific for taurine. Transport systems for taurine (NH2-CH2-CH2-SO3H), sulfonates, and sulfate esters import sulfur when sulfate levels are low. The most closely related proteins outside this family are putative aliphatic sulfonate binding proteins (TIGR01728).
Probab=50.90 E-value=76 Score=27.65 Aligned_cols=56 Identities=14% Similarity=0.088 Sum_probs=35.1
Q ss_pred CccEEEEEccCCCchhHHHHHHhCCCeeeEeeeeeeecCCCChHHHHHHc--CCCCEEEEECC
Q 026235 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP 237 (241)
Q Consensus 177 ~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~l--~~id~IvFtSp 237 (241)
+|++|-+..+......+...|++.|.+...+.+... . ..+....+ +++|+++...|
T Consensus 99 kGK~Igv~~~s~~~~~l~~~L~~~Gl~~~dv~~v~~-~----~~~~~~al~~G~vDa~~~~~p 156 (300)
T TIGR01729 99 KGKNVAVPFVSTTHYSLLAALKHWKTDPREVNILNL-K----PPQIVAAWQRGDIDAAYVWPP 156 (300)
T ss_pred CCCEEEeCCCCcHHHHHHHHHHHcCCChhheEEEec-C----cHHHHHHHHcCCcCEEEEecH
Confidence 478888877665556677889888887555443322 1 11223233 78898877665
No 315
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=50.75 E-value=1.2e+02 Score=27.24 Aligned_cols=138 Identities=14% Similarity=0.058 Sum_probs=76.5
Q ss_pred EEEeCCCCChHH----HHHHHHHCCCcEEEeceEEEeeCCCchHHHHHH---hcCCCccEEEEeCH--HHH--HHHHHHH
Q 026235 53 VVVTRERGKNGK----LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NADTIFDWIIITSP--EAG--SVFLEAW 121 (241)
Q Consensus 53 VLitR~~~~~~~----l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l---~~l~~~d~IiFTS~--~aV--~~f~~~l 121 (241)
+++....+.+.. -.+.+++.|+++..+-+-+.. ..+++.+.+ ++....|.|+.--| ..+ +.+++.+
T Consensus 37 iI~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~---~~~el~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I 113 (297)
T PRK14186 37 VLRVGDDPASAVYVRNKEKACARVGIASFGKHLPADT---SQAEVEALIAQLNQDERVDGILLQLPLPKHLDEVPLLHAI 113 (297)
T ss_pred EEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcc
Confidence 444444433333 344677789888765442221 123344444 34467899999877 222 2223322
Q ss_pred Hhc-CCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCC--CCccEEEEE-ccCCCchhHHHHH
Q 026235 122 KEA-GTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEEGL 197 (241)
Q Consensus 122 ~~~-~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~--~~~~~iL~~-~g~~~~~~L~~~L 197 (241)
... ..++..-.-.|. |- . |-. .+.| -|+.+.++.|..+. ..|++++++ ||.....-|...|
T Consensus 114 ~p~KDVDGl~~~n~g~-----l~-~------~~~-~~~P--cTp~aii~lL~~~~i~l~Gk~vvVIGrS~iVGkPla~lL 178 (297)
T PRK14186 114 DPDKDADGLHPLNLGR-----LV-K------GEP-GLRS--CTPAGVMRLLRSQQIDIAGKKAVVVGRSILVGKPLALML 178 (297)
T ss_pred CcccCcccCChhhHHH-----Hh-C------CCC-CCCC--CCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHH
Confidence 211 123444444442 21 1 321 2444 58999998887653 457776655 5555556688999
Q ss_pred HhCCCeeeEee
Q 026235 198 SNRGFEVVRLN 208 (241)
Q Consensus 198 ~~~G~~V~~~~ 208 (241)
.++|++|..+.
T Consensus 179 ~~~~atVtv~h 189 (297)
T PRK14186 179 LAANATVTIAH 189 (297)
T ss_pred HHCCCEEEEeC
Confidence 99999986663
No 316
>TIGR03427 ABC_peri_uca ABC transporter periplasmic binding protein, urea carboxylase region. Members of this family are ABC transporter periplasmic binding proteins associated with the urea carboxylase/allophanate hydrolase pathway, an alternative to urease for urea degradation. The protein is restricted to bacteria with the pathway, with its gene close to the urea carboxylase and allophanate hydrolase genes. The substrate for this transporter therefore is likely to be urea or a compound from which urea is easily derived.
Probab=50.71 E-value=25 Score=31.86 Aligned_cols=69 Identities=10% Similarity=0.102 Sum_probs=49.9
Q ss_pred cccCCCCCCCeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHH
Q 026235 42 TSASASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGS 115 (241)
Q Consensus 42 ~~~~~~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~ 115 (241)
-..-.+|+||+|.+++.....--+.+.|++.|.....+-+..+.+ .+...++ .-++.|+.+...|....
T Consensus 98 i~svaDLKGKkIav~~gs~~~~ll~~aL~~aGL~~~DV~~v~~~~----~d~~aAl-~~G~VDAa~~~eP~~s~ 166 (328)
T TIGR03427 98 GKSLADLKGQKVNLVELSVSHYLLARALESVGLSEKDVKVVNTSD----ADIVAAF-ITKDVTAVVTWNPQLSE 166 (328)
T ss_pred CCCHHHcCCCEEeccCCChHHHHHHHHHHHcCCCHHHeEEEeCCh----HHHHHHH-hcCCCcEEEEcCchHHH
Confidence 355678999999999988777788899999999755444444332 2334556 34899999988887554
No 317
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=50.64 E-value=1.1e+02 Score=25.37 Aligned_cols=45 Identities=16% Similarity=0.130 Sum_probs=30.2
Q ss_pred HHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCC---CCcEEEEeCHH
Q 026235 93 LSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGAG 137 (241)
Q Consensus 93 l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~---~~~~i~aIG~~ 137 (241)
+.+.++.....|+|+..+-.....+...+.+.+. .++.+++.+..
T Consensus 168 ~~~~l~~~~~~~ai~~~~d~~a~~~~~~l~~~g~~~p~di~vig~d~~ 215 (268)
T cd01575 168 LAELLARWPDLDAVFCSNDDLALGALFECQRRGISVPEDIAIAGFGDL 215 (268)
T ss_pred HHHHHhCCCCCCEEEECCcHHHHHHHHHHHHhCCCCCcceEEEecCCc
Confidence 4444543356788888887777777777777664 36677777754
No 318
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=50.19 E-value=1.4e+02 Score=26.76 Aligned_cols=160 Identities=20% Similarity=0.127 Sum_probs=87.5
Q ss_pred CeEEEeCCCCChHHH----HHHHHHCCCcEEEeceEEEeeCCCchHHHHHHh---cCCCccEEEEeCH--HHHH--HHHH
Q 026235 51 PKVVVTRERGKNGKL----IKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN---ADTIFDWIIITSP--EAGS--VFLE 119 (241)
Q Consensus 51 ~~VLitR~~~~~~~l----~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~---~l~~~d~IiFTS~--~aV~--~f~~ 119 (241)
.-++.....+.+..+ .+.+++.|+++..+-+-+. ...+++.+.++ +....|.|+.--| ..++ ..++
T Consensus 35 LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~---~~~~~l~~~I~~LN~D~~V~GIlvqlPLP~~id~~~i~~ 111 (288)
T PRK14171 35 LAIVLVGDNPASIIYVKNKIKNAHKIGIDTLLVNLSTT---IHTNDLISKINELNLDNEISGIIVQLPLPSSIDKNKILS 111 (288)
T ss_pred EEEEEeCCCccHHHHHHHHHHHHHHcCCEEEEEECCCC---CCHHHHHHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHHh
Confidence 335555555444443 4467778987775443221 12344444454 3478899999877 3222 2222
Q ss_pred HHHh-cCCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCC--CCccEEEEE-ccCCCchhHHH
Q 026235 120 AWKE-AGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEE 195 (241)
Q Consensus 120 ~l~~-~~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~--~~~~~iL~~-~g~~~~~~L~~ 195 (241)
.+.. ...++..-.-.|.-- . |-...+.| -|+.+.++.|..+. ..|++++++ ||.....-|..
T Consensus 112 ~I~p~KDVDGl~~~N~g~l~------~------g~~~~~~P--cTp~av~~lL~~y~i~l~GK~vvViGrS~iVGkPla~ 177 (288)
T PRK14171 112 AVSPSKDIDGFHPLNVGYLH------S------GISQGFIP--CTALGCLAVIKKYEPNLTGKNVVIIGRSNIVGKPLSA 177 (288)
T ss_pred ccCcccccccCCccchhhhh------c------CCCCCCcC--CCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHH
Confidence 2221 123455544444321 2 43122444 58899998887653 457776555 55555566888
Q ss_pred HHHhCCCeeeEeeeeeeecCCCChHHHHHHcCCCCEEEEE
Q 026235 196 GLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVA 235 (241)
Q Consensus 196 ~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~l~~id~IvFt 235 (241)
.|.++|++|+-|.-+. . .+.+...+.|+|+-.
T Consensus 178 lL~~~~ATVtichs~T----~----~L~~~~~~ADIvV~A 209 (288)
T PRK14171 178 LLLKENCSVTICHSKT----H----NLSSITSKADIVVAA 209 (288)
T ss_pred HHHHCCCEEEEeCCCC----C----CHHHHHhhCCEEEEc
Confidence 9999999987654321 1 122223567777654
No 319
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=50.10 E-value=1.1e+02 Score=25.63 Aligned_cols=32 Identities=6% Similarity=0.017 Sum_probs=25.3
Q ss_pred CCCCCeEEEeCCCC-ChHHHHHHHHHCCCcEEE
Q 026235 47 SNSNPKVVVTRERG-KNGKLIKALAKHRIDCLE 78 (241)
Q Consensus 47 ~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~ 78 (241)
.+.||+++||.... -...+++.|.+.|+++..
T Consensus 4 ~l~~k~~lItGas~gIG~~~a~~l~~~G~~v~~ 36 (255)
T PRK06463 4 RFKGKVALITGGTRGIGRAIAEAFLREGAKVAV 36 (255)
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEE
Confidence 45689999998754 467789999999988764
No 320
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=50.02 E-value=68 Score=27.06 Aligned_cols=70 Identities=20% Similarity=0.210 Sum_probs=36.9
Q ss_pred HHHHHHHCCCcEEEeceEEEeeCCCc----hHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCC-CCcEEEEeCHHH
Q 026235 65 LIKALAKHRIDCLELPLIQHAQGPDT----DRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT-PNVRIGVVGAGT 138 (241)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~----~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~-~~~~i~aIG~~T 138 (241)
+.+.++++|.++... . . ...+. ..+.+.++.-..+|+|+..+-.....+...+.+.++ .++.++..+...
T Consensus 142 f~~~~~~~~~~~~~~--~-~-~~~~~~~~~~~~~~~l~~~~~~~~i~~~~d~~a~~~~~al~~~g~~~di~vig~d~~~ 216 (271)
T cd06314 142 IKDAIKDSKIEIVDT--R-G-DEEDFAKAKSNAEDALNAHPDLKCMFGLYAYNGPAIAEAVKAAGKLGKVKIVGFDEDP 216 (271)
T ss_pred HHHHHhcCCcEEEEE--e-c-CccCHHHHHHHHHHHHHhCCCccEEEecCCccHHHHHHHHHHcCCCCceEEEEeCCCH
Confidence 456676777654431 1 1 11111 234445543345677776655555555666666665 356677776643
No 321
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=49.93 E-value=44 Score=27.18 Aligned_cols=55 Identities=18% Similarity=0.067 Sum_probs=36.8
Q ss_pred CCCCCeEEEe-CCCCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCH
Q 026235 47 SNSNPKVVVT-RERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP 111 (241)
Q Consensus 47 ~l~g~~VLit-R~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~ 111 (241)
++.||+|++. |+..-...++..|.++|+.|....-. ...+++.+ ...|.||-..+
T Consensus 33 ~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~-------T~~l~~~~---~~ADIVVsa~G 88 (160)
T PF02882_consen 33 DLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSK-------TKNLQEIT---RRADIVVSAVG 88 (160)
T ss_dssp STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TT-------SSSHHHHH---TTSSEEEE-SS
T ss_pred CCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCC-------CCccccee---eeccEEeeeec
Confidence 5889998877 66667899999999999998865332 23344444 57888885553
No 322
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=49.87 E-value=1.5e+02 Score=30.38 Aligned_cols=119 Identities=17% Similarity=0.089 Sum_probs=75.7
Q ss_pred ccccCCCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHH
Q 026235 41 ATSASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLE 119 (241)
Q Consensus 41 ~~~~~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~ 119 (241)
++..+..+.|.+||+.-...- .......|+++|+++...+ -. .+. ...++..+.||.|+-==.--+---.+
T Consensus 657 ~~~~~~~l~g~~iLlvddn~vn~~Va~~~l~~~g~~~~~~~-sg------~e~-l~~~~~~~~y~~ifmD~qMP~mDG~e 728 (786)
T KOG0519|consen 657 EPRDSKLLTGPKILLVDDNPVNRKVATGMLKKLGAEVTEVN-SG------QEA-LDKLKPPHSYDVIFMDLQMPEMDGYE 728 (786)
T ss_pred CccccccccCCceEEEecccchHHHHHHHHHHhCCeeEeec-Cc------HHH-HHhcCCCCcccEEEEEcCCcccchHH
Confidence 344777888999999988764 4556668999999999886 21 222 23343346777666432211111111
Q ss_pred HHHhc---CCCCcEEEE----eCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhC
Q 026235 120 AWKEA---GTPNVRIGV----VGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (241)
Q Consensus 120 ~l~~~---~~~~~~i~a----IG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~ 174 (241)
...+. -...++|+| +.+.|.+.+.+. |++. +..+..+-+.|...+.+.
T Consensus 729 ~~~~irk~~~~~~pIvAlTa~~~~~~~~~c~~~------Gmd~-yl~KP~~~~~l~~~l~~~ 783 (786)
T KOG0519|consen 729 ATREIRKKERWHLPIVALTADADPSTEEECLEV------GMDG-YLSKPFTLEKLVKILREF 783 (786)
T ss_pred HHHHHHHhhcCCCCEEEEecCCcHHHHHHHHHh------CCce-EEcccccHHHHHHHHHHH
Confidence 11111 012466766 678888888888 9996 667788999998888764
No 323
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=49.80 E-value=1.6e+02 Score=24.96 Aligned_cols=85 Identities=13% Similarity=0.011 Sum_probs=50.3
Q ss_pred CCCCCeEEEeCCC---CChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccE--E--EEeCHHHHHHHHH
Q 026235 47 SNSNPKVVVTRER---GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDW--I--IITSPEAGSVFLE 119 (241)
Q Consensus 47 ~l~g~~VLitR~~---~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~--I--iFTS~~aV~~f~~ 119 (241)
++.||.++||... .-...+++.|.+.|+++... .+.. .+.+.+++....+..... + =+++..+++.+++
T Consensus 4 ~~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~--~r~~--~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~ 79 (257)
T PRK08594 4 SLEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFT--YAGE--RLEKEVRELADTLEGQESLLLPCDVTSDEEITACFE 79 (257)
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEe--cCcc--cchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHH
Confidence 4678999999973 56888999999999987643 2211 112223333322221111 1 1588999999988
Q ss_pred HHHhc-CCCCcEEEEeC
Q 026235 120 AWKEA-GTPNVRIGVVG 135 (241)
Q Consensus 120 ~l~~~-~~~~~~i~aIG 135 (241)
.+.+. +.-+.-|.+.|
T Consensus 80 ~~~~~~g~ld~lv~nag 96 (257)
T PRK08594 80 TIKEEVGVIHGVAHCIA 96 (257)
T ss_pred HHHHhCCCccEEEECcc
Confidence 77543 32234444444
No 324
>COG0431 Predicted flavoprotein [General function prediction only]
Probab=49.74 E-value=55 Score=26.91 Aligned_cols=40 Identities=18% Similarity=0.118 Sum_probs=27.5
Q ss_pred hHHHHHHhcCCCccEEEEeCHH-------HHHHHHHHHHhcCCCCcE
Q 026235 91 DRLSSVLNADTIFDWIIITSPE-------AGSVFLEAWKEAGTPNVR 130 (241)
Q Consensus 91 ~~l~~~l~~l~~~d~IiFTS~~-------aV~~f~~~l~~~~~~~~~ 130 (241)
+.+....+.+...|.+||.||. ++++.++.+....+.+.+
T Consensus 56 ~~v~~~~~~i~~aD~li~~tPeYn~s~pg~lKnaiD~l~~~~~~~Kp 102 (184)
T COG0431 56 PAVQALREAIAAADGLIIATPEYNGSYPGALKNAIDWLSREALGGKP 102 (184)
T ss_pred HHHHHHHHHHHhCCEEEEECCccCCCCCHHHHHHHHhCCHhHhCCCc
Confidence 3355555566889999999974 777777766555455566
No 325
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=49.63 E-value=54 Score=27.32 Aligned_cols=37 Identities=19% Similarity=0.156 Sum_probs=21.3
Q ss_pred CCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHH
Q 026235 101 TIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAG 137 (241)
Q Consensus 101 ~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~ 137 (241)
.++++|+.++-.........+.+.+++++.+++.+..
T Consensus 180 ~~~~ai~~~~d~~a~~~~~~l~~~g~~di~iig~d~~ 216 (268)
T cd06323 180 PDIKGVFAQNDEMALGAIEALKAAGKDDVKVVGFDGT 216 (268)
T ss_pred CCcCEEEEcCCchHHHHHHHHHHcCCCCcEEEEeCCC
Confidence 4466666666655555566666655545555555543
No 326
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=49.56 E-value=1.9e+02 Score=25.78 Aligned_cols=158 Identities=18% Similarity=0.132 Sum_probs=85.4
Q ss_pred EEEeCCCCChHHH----HHHHHHCCCcEEEeceEEEeeCCCchHHHHHHh---cCCCccEEEEeCH--HHHH--HHHHHH
Q 026235 53 VVVTRERGKNGKL----IKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN---ADTIFDWIIITSP--EAGS--VFLEAW 121 (241)
Q Consensus 53 VLitR~~~~~~~l----~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~---~l~~~d~IiFTS~--~aV~--~f~~~l 121 (241)
++.....+.+..+ .+.+++.|+++...-+-+.. ..+++.+.+. .....|.|+.--| ..++ ..++.+
T Consensus 36 ii~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~---~~~~l~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I 112 (281)
T PRK14183 36 VILVGDDPASHTYVKMKAKACDRVGIYSITHEMPSTI---SQKEILETIAMMNNNPNIDGILVQLPLPKHIDTTKILEAI 112 (281)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCccCeEEEeCCCCCCCCHHHHHhcc
Confidence 4455544444333 34567779887655332211 2234444443 4478899999887 2322 222222
Q ss_pred Hh-cCCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCC--CCccEEEEE-ccCCCchhHHHHH
Q 026235 122 KE-AGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEEGL 197 (241)
Q Consensus 122 ~~-~~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~--~~~~~iL~~-~g~~~~~~L~~~L 197 (241)
.. ...++..-+-.|.- . . |-. .+.| -|+.+.++.|..+. ..|++++++ ||.....-|...|
T Consensus 113 ~p~KDVDGl~~~n~g~l-----~-~------g~~-~~~P--cTp~avi~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL 177 (281)
T PRK14183 113 DPKKDVDGFHPYNVGRL-----V-T------GLD-GFVP--CTPLGVMELLEEYEIDVKGKDVCVVGASNIVGKPMAALL 177 (281)
T ss_pred CchhcccccChhhhhHH-----h-c------CCC-CCCC--CcHHHHHHHHHHcCCCCCCCEEEEECCCCcchHHHHHHH
Confidence 11 12244444444522 1 2 422 2444 48999998888663 467887766 4445555688889
Q ss_pred HhCCCeeeEeeeeeeecCCCChHHHHHHcCCCCEEEEEC
Q 026235 198 SNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVAS 236 (241)
Q Consensus 198 ~~~G~~V~~~~vY~~~~~~~~~~~~~~~l~~id~IvFtS 236 (241)
.++|++|.-+.-+ | + ++.+...+.|+|+-..
T Consensus 178 ~~~~AtVti~hs~-T---~----~l~~~~~~ADIvV~Av 208 (281)
T PRK14183 178 LNANATVDICHIF-T---K----DLKAHTKKADIVIVGV 208 (281)
T ss_pred HHCCCEEEEeCCC-C---c----CHHHHHhhCCEEEEec
Confidence 8999998644222 2 1 1222235677776543
No 327
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=49.55 E-value=1.7e+02 Score=25.12 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=10.6
Q ss_pred EEEEccCCCchhHHHHHHhCCCee
Q 026235 181 VLYPASAKASNEIEEGLSNRGFEV 204 (241)
Q Consensus 181 iL~~~g~~~~~~L~~~L~~~G~~V 204 (241)
++++-|-....++...+ +.|+++
T Consensus 113 i~~iPG~~TpsEi~~A~-~~Ga~~ 135 (222)
T PRK07114 113 VPYSPGCGSLSEIGYAE-ELGCEI 135 (222)
T ss_pred CCEeCCCCCHHHHHHHH-HCCCCE
Confidence 34444544444555544 344443
No 328
>TIGR03427 ABC_peri_uca ABC transporter periplasmic binding protein, urea carboxylase region. Members of this family are ABC transporter periplasmic binding proteins associated with the urea carboxylase/allophanate hydrolase pathway, an alternative to urease for urea degradation. The protein is restricted to bacteria with the pathway, with its gene close to the urea carboxylase and allophanate hydrolase genes. The substrate for this transporter therefore is likely to be urea or a compound from which urea is easily derived.
Probab=49.21 E-value=2e+02 Score=25.95 Aligned_cols=137 Identities=15% Similarity=0.064 Sum_probs=77.0
Q ss_pred HHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHHHHH
Q 026235 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE 143 (241)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~L~ 143 (241)
.+.+.|++.|.+|...+. ++..+...++ .-+..|...+++..++.... ..+ -.++++.++...
T Consensus 25 ~fe~~l~~~Gl~Ve~~~f------~~~~~~l~Al-~aG~iD~~~~g~~~~~~~~~----a~g-~~~~iv~v~~~~----- 87 (328)
T TIGR03427 25 IVDKWADKYGITIEVVQI------NDYVESINQY-TAGKFDGCTMTNMDALTIPA----AGG-VDTTALIVGDFS----- 87 (328)
T ss_pred chhhhHHHcCCeEEEEEC------CChHHHHHHH-HcCCCCEEeecCHHHHHHHH----hCC-CCeEEEEEEccC-----
Confidence 455567777877664432 2222222334 24888987777766653211 122 235666665421
Q ss_pred HhhhccCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEccCCCchhHHHHHHhCCCeeeEeeeeeeecCCCChHHHH
Q 026235 144 EVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVL 223 (241)
Q Consensus 144 ~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~~~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~ 223 (241)
. |-...+++. ++.+... +|++|-+.+|..+.-.|...|++.|.+...+.+-...+ . +..
T Consensus 88 -~------g~~~ivv~~-------i~svaDL--KGKkIav~~gs~~~~ll~~aL~~aGL~~~DV~~v~~~~-~----d~~ 146 (328)
T TIGR03427 88 -N------GNDGIVLKG-------GKSLADL--KGQKVNLVELSVSHYLLARALESVGLSEKDVKVVNTSD-A----DIV 146 (328)
T ss_pred -C------CceEEEECC-------CCCHHHc--CCCEEeccCCChHHHHHHHHHHHcCCCHHHeEEEeCCh-H----HHH
Confidence 2 322223332 2333333 57999999887776778899999999866555543322 1 122
Q ss_pred HHc--CCCCEEEEECCc
Q 026235 224 KQA--LSIPVVAVASPS 238 (241)
Q Consensus 224 ~~l--~~id~IvFtSps 238 (241)
..+ +++|+++..-|.
T Consensus 147 aAl~~G~VDAa~~~eP~ 163 (328)
T TIGR03427 147 AAFITKDVTAVVTWNPQ 163 (328)
T ss_pred HHHhcCCCcEEEEcCch
Confidence 223 789988776653
No 329
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=49.19 E-value=1.3e+02 Score=25.56 Aligned_cols=47 Identities=17% Similarity=0.132 Sum_probs=31.9
Q ss_pred HHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHH
Q 026235 92 RLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGT 138 (241)
Q Consensus 92 ~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~T 138 (241)
.+.+.+..-.++|+|+.++-......++.+.+.++.++.++.++...
T Consensus 173 ~~~~~l~~~~~~~ai~~~nd~~a~g~~~al~~~g~~di~vvgfd~~~ 219 (272)
T cd06313 173 IWETWLTKYPQLDGAFCHNDSMALAAYQIMKAAGRTKIVIGGVDGDP 219 (272)
T ss_pred HHHHHHHhCCCCCEEEECCCcHHHHHHHHHHHcCCCceEEEeecCCH
Confidence 34444543356788888887777777777777766667777777543
No 330
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=49.18 E-value=58 Score=25.86 Aligned_cols=41 Identities=15% Similarity=0.211 Sum_probs=24.8
Q ss_pred HHHHHHC-CCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeC
Q 026235 66 IKALAKH-RIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS 110 (241)
Q Consensus 66 ~~~L~~~-G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS 110 (241)
++.|+++ |+++..+ +. .+......+.+.+ .-+++|+||+|.
T Consensus 42 a~~L~~~~Gi~v~~v-i~--~~~gg~~~i~~~I-~~g~i~lVInt~ 83 (142)
T PRK05234 42 GGLIQEATGLDVTRL-LS--GPLGGDQQIGALI-AEGKIDMLIFFR 83 (142)
T ss_pred HHHHHhccCCeeEEE-Ec--CCCCCchhHHHHH-HcCceeEEEEec
Confidence 4456667 7776655 11 1211234566666 458999999986
No 331
>PRK05872 short chain dehydrogenase; Provisional
Probab=49.04 E-value=1.8e+02 Score=25.27 Aligned_cols=83 Identities=18% Similarity=0.065 Sum_probs=49.3
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCC-CccEE----EEeCHHHHHHHHH
Q 026235 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT-IFDWI----IITSPEAGSVFLE 119 (241)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~-~~d~I----iFTS~~aV~~f~~ 119 (241)
.++.|++||||....+ ...+++.|.++|+++..+ .+ +.+.+.+..+.++ ..++. =+|+..+++.+++
T Consensus 5 ~~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~--~r-----~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~ 77 (296)
T PRK05872 5 TSLAGKVVVVTGAARGIGAELARRLHARGAKLALV--DL-----EEAELAALAAELGGDDRVLTVVADVTDLAAMQAAAE 77 (296)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE--eC-----CHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHH
Confidence 4577999999987653 678899999999876543 11 2222333222232 22222 2578888888877
Q ss_pred HHHhc-CCCCcEEEEeC
Q 026235 120 AWKEA-GTPNVRIGVVG 135 (241)
Q Consensus 120 ~l~~~-~~~~~~i~aIG 135 (241)
.+.+. +.-+.-|.+.|
T Consensus 78 ~~~~~~g~id~vI~nAG 94 (296)
T PRK05872 78 EAVERFGGIDVVVANAG 94 (296)
T ss_pred HHHHHcCCCCEEEECCC
Confidence 66443 32245555555
No 332
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=49.03 E-value=51 Score=27.88 Aligned_cols=67 Identities=10% Similarity=0.082 Sum_probs=40.6
Q ss_pred CCCeEEEeCCC-----CChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHH
Q 026235 49 SNPKVVVTRER-----GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFL 118 (241)
Q Consensus 49 ~g~~VLitR~~-----~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~ 118 (241)
.+.+|++.... ...+.+.+.+++.|+.....+........+.+++.+. +.+.|.|+|+-.+..+..-
T Consensus 28 ~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~~~~~---l~~ad~I~~~GG~~~~~~~ 99 (217)
T cd03145 28 AGARIVVIPAASEEPAEVGEEYRDVFERLGAREVEVLVIDSREAANDPEVVAR---LRDADGIFFTGGDQLRITS 99 (217)
T ss_pred CCCcEEEEeCCCcChhHHHHHHHHHHHHcCCceeEEeccCChHHcCCHHHHHH---HHhCCEEEEeCCcHHHHHH
Confidence 35666665443 2356678888999986444433322112233444444 4678999999999876543
No 333
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=48.95 E-value=1.7e+02 Score=27.52 Aligned_cols=140 Identities=12% Similarity=0.049 Sum_probs=74.5
Q ss_pred hHHHHHHHHHCCCcEEEeceEE------------Eee-CCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHh-cCCC
Q 026235 62 NGKLIKALAKHRIDCLELPLIQ------------HAQ-GPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE-AGTP 127 (241)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~------------~~~-~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~-~~~~ 127 (241)
..++.+.|++.|+++..+|=+. ..+ ....++ +...+....-+..++..-....+.+++ .+.+
T Consensus 176 ~~el~~lL~~~Gl~~~~~~d~s~~~d~~~~~~~~~~~gg~~~~~----i~~~~~A~~niv~~~~~~~~~a~~Le~~~giP 251 (435)
T cd01974 176 MREIKRLLELMGVDYTILPDTSDVLDTPADGEYRMYPGGTTLEE----LKDAGNAKATLALQEYATEKTAKFLEKKCKVP 251 (435)
T ss_pred HHHHHHHHHHcCCCEEEecccccccCCCCCCCccccCCCCCHHH----HHhhccCcEEEEECccccHHHHHHHHHHhCCC
Confidence 5799999999999998665211 111 112232 334556666666666544455555654 4444
Q ss_pred CcEE-EEeCH-HHHHHHHHhhhccCCCCceeecCCC--CCHHHHHHHhhhC--CCCccEEEEEccCCCchhHHHHHHhCC
Q 026235 128 NVRI-GVVGA-GTASIFEEVIQSSKCSLDVAFSPSK--ATGKILASELPKN--GKKKCTVLYPASAKASNEIEEGLSNRG 201 (241)
Q Consensus 128 ~~~i-~aIG~-~Ta~~L~~~~~~~~~Gi~~~~~p~~--~t~e~L~~~l~~~--~~~~~~iL~~~g~~~~~~L~~~L~~~G 201 (241)
-+.. .-+|. .|.+.+++.. .++|..+ |+. ..-+.+.+.+.+. ...|+++.+..+..-.--+.+.|.+.|
T Consensus 252 ~~~~~~p~G~~~t~~~l~~l~--~~~g~~~---~~~i~~er~~~~~~~~~~~~~l~gkrv~i~g~~~~~~~la~~L~elG 326 (435)
T cd01974 252 VETLNMPIGVAATDEFLMALS--ELTGKPI---PEELEEERGRLVDAMTDSHQYLHGKKFALYGDPDFLIGLTSFLLELG 326 (435)
T ss_pred eeecCCCcChHHHHHHHHHHH--HHhCCCC---CHHHHHHHHHHHHHHHHHHHhcCCCEEEEEcChHHHHHHHHHHHHCC
Confidence 2222 23443 4555555541 1126542 111 0112344444332 235788877744323334778999999
Q ss_pred CeeeEeeee
Q 026235 202 FEVVRLNTY 210 (241)
Q Consensus 202 ~~V~~~~vY 210 (241)
.++..+.++
T Consensus 327 m~v~~~~~~ 335 (435)
T cd01974 327 MEPVHVLTG 335 (435)
T ss_pred CEEEEEEeC
Confidence 999666654
No 334
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=48.88 E-value=37 Score=27.99 Aligned_cols=51 Identities=22% Similarity=0.276 Sum_probs=32.6
Q ss_pred CCCchhHHHHHHhCCCeeeEeeeeeeecCCCCh--HHHHHHcC-CCCEEEEECCccC
Q 026235 187 AKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVD--QTVLKQAL-SIPVVAVASPSAV 240 (241)
Q Consensus 187 ~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~--~~~~~~l~-~id~IvFtSps~v 240 (241)
+.+.+.|.+.|++.|.++ ..|+-++.+... ..+.+.+. .+|+|+.|-...+
T Consensus 26 D~sG~~l~~~L~~ag~~~---~~~~iV~D~~~~I~~~l~~~~~~~~DvvlttGGTG~ 79 (169)
T COG0521 26 DKSGPLLVELLEEAGHNV---AAYTIVPDDKEQIRATLIALIDEDVDVVLTTGGTGI 79 (169)
T ss_pred ccchhHHHHHHHHcCCcc---ceEEEeCCCHHHHHHHHHHHhcCCCCEEEEcCCccC
Confidence 346788999999999887 666666554321 12222233 3899988866543
No 335
>PRK07053 glutamine amidotransferase; Provisional
Probab=48.70 E-value=1.2e+02 Score=26.10 Aligned_cols=51 Identities=10% Similarity=0.023 Sum_probs=34.6
Q ss_pred CeEEEeCCC--CChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeC
Q 026235 51 PKVVVTRER--GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS 110 (241)
Q Consensus 51 ~~VLitR~~--~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS 110 (241)
++|++.+.. ..-..+.+.|++.|.++..+..+.-.... .++.++|.||++-
T Consensus 3 ~~ilviqh~~~e~~g~i~~~L~~~g~~~~v~~~~~~~~~~---------~~~~~~d~lii~G 55 (234)
T PRK07053 3 KTAVAIRHVAFEDLGSFEQVLGARGYRVRYVDVGVDDLET---------LDALEPDLLVVLG 55 (234)
T ss_pred ceEEEEECCCCCCChHHHHHHHHCCCeEEEEecCCCccCC---------CCccCCCEEEECC
Confidence 678887664 35667999999999888776655322111 1345789988875
No 336
>PLN02409 serine--glyoxylate aminotransaminase
Probab=48.42 E-value=55 Score=30.14 Aligned_cols=63 Identities=21% Similarity=0.128 Sum_probs=43.3
Q ss_pred CCCCeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcC--CCccEEEEeCH
Q 026235 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD--TIFDWIIITSP 111 (241)
Q Consensus 48 l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l--~~~d~IiFTS~ 111 (241)
..|.+||++.+..-...+.+.++.+|+++..+|.-.-. ..+.+.+.+.+... ++...|++++.
T Consensus 82 ~~Gd~Vlv~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~-~~~~~~l~~~l~~~~~~~~k~v~~~~~ 146 (401)
T PLN02409 82 SPGDKVVSFRIGQFSLLWIDQMQRLNFDVDVVESPWGQ-GADLDILKSKLRQDTNHKIKAVCVVHN 146 (401)
T ss_pred CCCCEEEEeCCCchhHHHHHHHHHcCCceEEEECCCCC-CCCHHHHHHHHhhCcCCCccEEEEEee
Confidence 36789999997655566677888899999988853211 12456677777431 26788998765
No 337
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=48.40 E-value=44 Score=29.18 Aligned_cols=48 Identities=10% Similarity=0.065 Sum_probs=25.6
Q ss_pred CCceeecCCCCCH-HHHHHHhhhCCCCccEEEEEccCCCchhHHHHHHhCCCee
Q 026235 152 SLDVAFSPSKATG-KILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEV 204 (241)
Q Consensus 152 Gi~~~~~p~~~t~-e~L~~~l~~~~~~~~~iL~~~g~~~~~~L~~~L~~~G~~V 204 (241)
|+... ..+-.++ ..+.+.|.+....+++++++ | .+.+.+.|++.|+.+
T Consensus 59 G~~~~-~~~i~ts~~~~~~~l~~~~~~~~~v~~i-G---~~~~~~~l~~~g~~~ 107 (279)
T TIGR01452 59 GFNGL-AEQLFSSALCAARLLRQPPDAPKAVYVI-G---EEGLRAELDAAGIRL 107 (279)
T ss_pred CCCCC-hhhEecHHHHHHHHHHhhCcCCCEEEEE-c---CHHHHHHHHHCCCEE
Confidence 77542 1222333 44455565532234566666 3 235677787777764
No 338
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=48.35 E-value=1.1e+02 Score=26.29 Aligned_cols=35 Identities=17% Similarity=0.106 Sum_probs=19.1
Q ss_pred CccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCH
Q 026235 102 IFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGA 136 (241)
Q Consensus 102 ~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~ 136 (241)
++++|+.++-.....+...+.+.++.++.+++.+.
T Consensus 207 ~~~ai~~~~d~~A~g~l~al~~~G~~dv~vig~d~ 241 (295)
T PRK10653 207 DVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDG 241 (295)
T ss_pred CcCEEEECCChhHHHHHHHHHHcCCCceEEEEeCC
Confidence 45566665555555555555555554555555543
No 339
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=48.34 E-value=1.6e+02 Score=25.66 Aligned_cols=127 Identities=12% Similarity=0.077 Sum_probs=71.0
Q ss_pred CeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHH-HHHHHHHHHHhcCC---
Q 026235 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE-AGSVFLEAWKEAGT--- 126 (241)
Q Consensus 51 ~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~-aV~~f~~~l~~~~~--- 126 (241)
|+|||..+...+..+.+.|.+.|. +. +++..--. . +.. .......-+.+-+- ....+.+.+.+.+.
T Consensus 1 m~ILvlgGTtE~r~la~~L~~~g~-v~-~sv~t~~g----~---~~~-~~~~~~~~v~~G~lg~~~~l~~~l~~~~i~~v 70 (249)
T PF02571_consen 1 MKILVLGGTTEGRKLAERLAEAGY-VI-VSVATSYG----G---ELL-KPELPGLEVRVGRLGDEEGLAEFLRENGIDAV 70 (249)
T ss_pred CEEEEEechHHHHHHHHHHHhcCC-EE-EEEEhhhh----H---hhh-ccccCCceEEECCCCCHHHHHHHHHhCCCcEE
Confidence 689999999899999999999997 33 22221110 0 011 11111223344444 66666666666554
Q ss_pred -C-CcEEEE-eCHHHHHHHHHhhhccCCCCceeec--C-----------CCCCHHHHHHHhhhCCCCccEEEEEccCCCc
Q 026235 127 -P-NVRIGV-VGAGTASIFEEVIQSSKCSLDVAFS--P-----------SKATGKILASELPKNGKKKCTVLYPASAKAS 190 (241)
Q Consensus 127 -~-~~~i~a-IG~~Ta~~L~~~~~~~~~Gi~~~~~--p-----------~~~t~e~L~~~l~~~~~~~~~iL~~~g~~~~ 190 (241)
+ ..+++. |-....++.++. |+...-. | ...+.++.++.+.+. .+++||+-.|...-
T Consensus 71 IDATHPfA~~is~na~~a~~~~------~ipylR~eRp~~~~~~~~~~~~v~~~~eA~~~l~~~--~~~~iflttGsk~L 142 (249)
T PF02571_consen 71 IDATHPFAAEISQNAIEACREL------GIPYLRFERPSWQPEPDDNWHYVDSYEEAAELLKEL--GGGRIFLTTGSKNL 142 (249)
T ss_pred EECCCchHHHHHHHHHHHHhhc------CcceEEEEcCCcccCCCCeEEEeCCHHHHHHHHhhc--CCCCEEEeCchhhH
Confidence 2 233333 445555566666 7653211 1 013667777777554 34799998886654
Q ss_pred hhHHH
Q 026235 191 NEIEE 195 (241)
Q Consensus 191 ~~L~~ 195 (241)
+.+..
T Consensus 143 ~~f~~ 147 (249)
T PF02571_consen 143 PPFVP 147 (249)
T ss_pred HHHhh
Confidence 44443
No 340
>PRK11480 tauA taurine transporter substrate binding subunit; Provisional
Probab=48.19 E-value=58 Score=28.94 Aligned_cols=57 Identities=11% Similarity=0.086 Sum_probs=36.7
Q ss_pred CccEEEEEccCCCchhHHHHHHhCCCeeeEeeeeeeecCCCChHHHHHHc--CCCCEEEEECCc
Q 026235 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPS 238 (241)
Q Consensus 177 ~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~l--~~id~IvFtSps 238 (241)
+|++|.++.+......+...|++.|.+...+..... . ..+....+ +++|+++...|.
T Consensus 121 kGK~Iav~~~s~~~~~l~~~L~~~Gl~~~dv~~v~~---~--~~~~~~Al~~G~VDAa~~~~p~ 179 (320)
T PRK11480 121 IGKRIAVPFISTTHYSLLAALKHWGIKPGQVEIVNL---Q--PPAIIAAWQRGDIDGAYVWAPA 179 (320)
T ss_pred CCCEEecCCCCchHHHHHHHHHHcCCCHhheEEEEC---C--cHHHHHHHHcCCcCEEEEcchH
Confidence 478999987665556688899999987766543222 1 12233333 789988776653
No 341
>PLN02891 IMP cyclohydrolase
Probab=48.17 E-value=46 Score=32.39 Aligned_cols=91 Identities=15% Similarity=0.163 Sum_probs=54.4
Q ss_pred EEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHH-hhhCCCC-ccEEE
Q 026235 105 WIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASE-LPKNGKK-KCTVL 182 (241)
Q Consensus 105 ~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~-l~~~~~~-~~~iL 182 (241)
.|=.+-+.++.-|...|.+. +..|++-| .|++.|++. |+.+.-+.+-....++++- .+...++ ..-||
T Consensus 26 LISVsDKtgi~~fAk~L~~~---gveIiSTg-GTak~L~e~------Gi~v~~Vsd~TgfPEiL~GRVKTLHPkIhgGIL 95 (547)
T PLN02891 26 LISLSDKTDLALLANGLQEL---GYTIVSTG-GTASALEAA------GVSVTKVEELTNFPEMLDGRVKTLHPAVHGGIL 95 (547)
T ss_pred EEEEecccCHHHHHHHHHHC---CCEEEEcc-hHHHHHHHc------CCceeeHHhccCCchhhCCcccccCchhhhhhh
Confidence 45556688888898888775 58899998 699999999 9998666542111222211 1111110 11233
Q ss_pred EEccCCCchhHHHHHHhCCCeeeEee
Q 026235 183 YPASAKASNEIEEGLSNRGFEVVRLN 208 (241)
Q Consensus 183 ~~~g~~~~~~L~~~L~~~G~~V~~~~ 208 (241)
.- ...+.=.+.|+++|+.-..+.
T Consensus 96 a~---r~~~~h~~~l~~~~I~~IDlV 118 (547)
T PLN02891 96 AR---RDQEHHMEALNEHGIGTIDVV 118 (547)
T ss_pred cC---CCCHHHHHHHHHcCCCceeeE
Confidence 22 233455677888988544433
No 342
>PRK12744 short chain dehydrogenase; Provisional
Probab=48.15 E-value=1.5e+02 Score=24.89 Aligned_cols=35 Identities=14% Similarity=0.227 Sum_probs=26.3
Q ss_pred CCCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEe
Q 026235 45 SASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (241)
Q Consensus 45 ~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (241)
+..+.|+++|||..... ...+++.|.+.|+++..+
T Consensus 3 ~~~l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i 38 (257)
T PRK12744 3 DHSLKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAI 38 (257)
T ss_pred CCCCCCcEEEEECCCchHHHHHHHHHHHCCCcEEEE
Confidence 34567899999987643 678888998899885543
No 343
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=48.15 E-value=90 Score=27.28 Aligned_cols=70 Identities=21% Similarity=0.239 Sum_probs=43.3
Q ss_pred CCe-EEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHh
Q 026235 50 NPK-VVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE 123 (241)
Q Consensus 50 g~~-VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~ 123 (241)
|.. +.+++.. ...+.+.+++.|+++..+|--.- ...|..++.+.+++ .+.|+||.++-+.-..+...++.
T Consensus 31 g~~v~f~~~~~--~~~~~~~i~~~g~~v~~~~~~~~-~~~d~~~~~~~l~~-~~~d~vV~D~y~~~~~~~~~~k~ 101 (279)
T TIGR03590 31 GAEVAFACKPL--PGDLIDLLLSAGFPVYELPDESS-RYDDALELINLLEE-EKFDILIVDHYGLDADWEKLIKE 101 (279)
T ss_pred CCEEEEEeCCC--CHHHHHHHHHcCCeEEEecCCCc-hhhhHHHHHHHHHh-cCCCEEEEcCCCCCHHHHHHHHH
Confidence 444 4455554 34567788999998877653321 11233456666644 37899999997655556666654
No 344
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=48.12 E-value=2.7e+02 Score=26.97 Aligned_cols=140 Identities=14% Similarity=0.098 Sum_probs=77.5
Q ss_pred CChHHHHHHHHHCCCcEEE-eceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHh-cCCCCcEEEEeCH-
Q 026235 60 GKNGKLIKALAKHRIDCLE-LPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE-AGTPNVRIGVVGA- 136 (241)
Q Consensus 60 ~~~~~l~~~L~~~G~~v~~-~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~-~~~~~~~i~aIG~- 136 (241)
.+-.++.+.|+..|+++.. +|. . ...++ |..+++.+.=|..++..-..+.+.|++ .+.+-+...=||-
T Consensus 180 ~Dl~eikrLL~~~Gi~vn~v~~~-g----~sl~d----i~~~~~A~~NIvl~~~~g~~~A~~Le~~fgiP~i~~~PiGi~ 250 (513)
T CHL00076 180 HDCRELKRLLQDLGIEINQIIPE-G----GSVED----LKNLPKAWFNIVPYREVGLMTAKYLEKEFGMPYISTTPMGIV 250 (513)
T ss_pred chHHHHHHHHHHCCCeEEEEECC-C----CCHHH----HHhcccCcEEEEechhhhHHHHHHHHHHhCCCeEeeccCCHH
Confidence 3457899999999999983 331 1 12222 334566666555566555566777765 3444344344663
Q ss_pred HHHHHHHHhhhccCCCCceeecC-CCCCHHHHHHHhh--------------hCCCCccEEEEEccCCCchhHHHHH-HhC
Q 026235 137 GTASIFEEVIQSSKCSLDVAFSP-SKATGKILASELP--------------KNGKKKCTVLYPASAKASNEIEEGL-SNR 200 (241)
Q Consensus 137 ~Ta~~L~~~~~~~~~Gi~~~~~p-~~~t~e~L~~~l~--------------~~~~~~~~iL~~~g~~~~~~L~~~L-~~~ 200 (241)
.|.+.|++. ..+.|....... ++-..+.+++.-. .....|+++++..+..-.--+...| ++.
T Consensus 251 ~T~~fLr~l--a~~lg~~~~~i~~~e~~~e~~i~~~~~~~~~~~~~~r~~d~~~l~Gkrv~I~gd~~~a~~l~~~L~~EL 328 (513)
T CHL00076 251 DTAECIRQI--QKILNKLASDILEKKVDYEKYIDQQTRFVSQAAWFSRSIDCQNLTGKKAVVFGDATHAASMTKILAREM 328 (513)
T ss_pred HHHHHHHHH--HHHhCCCcchhhhchhhHHHHHHHhhhhhhhhhHhhhhhhccccCCCEEEEEcCchHHHHHHHHHHHhC
Confidence 566777665 122354321110 1122233332211 1123578998886554555678888 589
Q ss_pred CCeeeEeeee
Q 026235 201 GFEVVRLNTY 210 (241)
Q Consensus 201 G~~V~~~~vY 210 (241)
|.++.-.-.|
T Consensus 329 Gm~vv~~g~~ 338 (513)
T CHL00076 329 GIRVSCAGTY 338 (513)
T ss_pred CCEEEEecCc
Confidence 9998644444
No 345
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=47.97 E-value=8.2 Score=35.49 Aligned_cols=153 Identities=15% Similarity=0.126 Sum_probs=84.8
Q ss_pred CCeEEEeCC---C-CChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhc-
Q 026235 50 NPKVVVTRE---R-GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA- 124 (241)
Q Consensus 50 g~~VLitR~---~-~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~- 124 (241)
.+.|-|... . ....++.+.|++.|+++..++.-.. ..+++ ..+++.+.-+..++.+-..+.+.+++.
T Consensus 144 ~~~VNiiG~~~~~~~d~~el~~lL~~~Gi~v~~~~~~~~----t~~e~----~~~~~A~lniv~~~~~~~~~a~~L~e~~ 215 (398)
T PF00148_consen 144 PRSVNIIGGSPLGPGDLEELKRLLEELGIEVNAVFPGGT----TLEEI----RKAPEAALNIVLCPEGGPYAAEWLEERF 215 (398)
T ss_dssp SSEEEEEEESTBTHHHHHHHHHHHHHTTEEEEEEEETTB----CHHHH----HHGGGSSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCceEEecCcCCCcccHHHHHHHHHHCCCceEEEeCCCC----CHHHH----HhCCcCcEEEEeccchhhHHHHHHHHHh
Confidence 345655432 2 3567899999999997776542211 22333 345778888888998777777777663
Q ss_pred CCCCcE-EEEeCHH-HHHHHHHhhhccCCCCceeecCCC--CCHHHHHHHhhhC--CCCccEEEEEccCCCchhHHHHHH
Q 026235 125 GTPNVR-IGVVGAG-TASIFEEVIQSSKCSLDVAFSPSK--ATGKILASELPKN--GKKKCTVLYPASAKASNEIEEGLS 198 (241)
Q Consensus 125 ~~~~~~-i~aIG~~-Ta~~L~~~~~~~~~Gi~~~~~p~~--~t~e~L~~~l~~~--~~~~~~iL~~~g~~~~~~L~~~L~ 198 (241)
+.+-+. ..-+|.. |.+.+++.. . ..|... .++. ..-+...+.+.+. ...++++++..+....-.|...|.
T Consensus 216 giP~~~~~~p~G~~~t~~~l~~i~-~-~lg~~~--~~~~i~~~~~~~~~~l~~~~~~l~g~~v~i~~~~~~~~~l~~~L~ 291 (398)
T PF00148_consen 216 GIPYLYFPSPYGIEGTDAWLRAIA-E-ALGKPI--AEAEIAEERERAEDALADYRERLGGKRVAIYGDPDRALGLARFLE 291 (398)
T ss_dssp T-EEEEEC-SBSHHHHHHHHHHHH-H-HHTHHH--HHHHHHHHHHHHHHHHHHHHHHHTT-EEEEESSHHHHHHHHHHHH
T ss_pred CCCeeeccccccHHHHHHHHHHHH-H-HhCCch--hhHHHHHHHHHHHHHHHhhHHhhcCceEEEEcCchhHHHHHHHHH
Confidence 433222 2336644 555555541 1 114111 0100 0112222223221 124689988766544456999999
Q ss_pred hCCCeeeEeeeeeeec
Q 026235 199 NRGFEVVRLNTYTTEP 214 (241)
Q Consensus 199 ~~G~~V~~~~vY~~~~ 214 (241)
+.|.++..+.++....
T Consensus 292 elG~~v~~v~~~~~~~ 307 (398)
T PF00148_consen 292 ELGMEVVAVGCDDKSP 307 (398)
T ss_dssp HTT-EEEEEEESSGGH
T ss_pred HcCCeEEEEEEccCch
Confidence 9999999998886643
No 346
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=47.94 E-value=34 Score=31.65 Aligned_cols=37 Identities=22% Similarity=0.209 Sum_probs=28.0
Q ss_pred CCCccEEEEeCHH---H----HHHHHHHHHhcCCCCcEEEEeCH
Q 026235 100 DTIFDWIIITSPE---A----GSVFLEAWKEAGTPNVRIGVVGA 136 (241)
Q Consensus 100 l~~~d~IiFTS~~---a----V~~f~~~l~~~~~~~~~i~aIG~ 136 (241)
+.++|.|+|-||. + +..|++.+....+.+.++++.|.
T Consensus 298 ~~~~d~ii~GspT~~~~~~~~~~~~l~~l~~~~~~~K~~a~FGs 341 (394)
T PRK11921 298 VFKSKAILVGSSTINRGILSSTAAILEEIKGLGFKNKKAAAFGS 341 (394)
T ss_pred HHhCCEEEEECCCcCccccHHHHHHHHHhhccCcCCCEEEEEec
Confidence 3579999999987 2 55666666666667888999985
No 347
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=47.90 E-value=70 Score=29.31 Aligned_cols=67 Identities=16% Similarity=0.143 Sum_probs=38.9
Q ss_pred CCHHHHHHHhhhCCCCccEEEEEccCC-----CchhHHHHHHhCCCeeeEeeeeeeecCCCChH---HHHHHc--CCCCE
Q 026235 162 ATGKILASELPKNGKKKCTVLYPASAK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQ---TVLKQA--LSIPV 231 (241)
Q Consensus 162 ~t~e~L~~~l~~~~~~~~~iL~~~g~~-----~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~---~~~~~l--~~id~ 231 (241)
...+.+.+.+.+.. .++++++++.. .-+.+.+.|++.|+++. +|.........+ +..+.. .++|+
T Consensus 12 g~l~~l~~~l~~~~--~~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~---~~~~v~~~p~~~~v~~~~~~~~~~~~D~ 86 (376)
T cd08193 12 GSLARLGELLAALG--AKRVLVVTDPGILKAGLIDPLLASLEAAGIEVT---VFDDVEADPPEAVVEAAVEAARAAGADG 86 (376)
T ss_pred CHHHHHHHHHHHcC--CCeEEEEcCcchhhCccHHHHHHHHHHcCCeEE---EECCCCCCcCHHHHHHHHHHHHhcCCCE
Confidence 34556666665542 36899888764 12567788888887654 454443333333 223222 47888
Q ss_pred EE
Q 026235 232 VA 233 (241)
Q Consensus 232 Iv 233 (241)
|+
T Consensus 87 II 88 (376)
T cd08193 87 VI 88 (376)
T ss_pred EE
Confidence 76
No 348
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=47.58 E-value=40 Score=27.01 Aligned_cols=83 Identities=23% Similarity=0.247 Sum_probs=51.3
Q ss_pred hcCCCCCCcccceeccccccccCCCCCCCeEEEeC-CCC-ChHHHHHHHHHCCCcEEE---eceEEEeeCCCchHHHHHH
Q 026235 23 RLNRPLPFQFSRIQASSDATSASASNSNPKVVVTR-ERG-KNGKLIKALAKHRIDCLE---LPLIQHAQGPDTDRLSSVL 97 (241)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~VLitR-~~~-~~~~l~~~L~~~G~~v~~---~P~~~~~~~~~~~~l~~~l 97 (241)
|.|||-|+--+ -.+||.|||- |.. .-..+.+.|+++|+.... -|.|.+.+++... -..+
T Consensus 3 ~mnrPAPveIs--------------y~~MrFLIThnPtnaTln~fieELkKygvttvVRVCe~TYdt~~lek~G--I~Vl 66 (173)
T KOG2836|consen 3 RMNRPAPVEIS--------------YKNMRFLITHNPTNATLNKFIEELKKYGVTTVVRVCEPTYDTTPLEKEG--ITVL 66 (173)
T ss_pred cccCCCCeeee--------------ccceEEEEecCCCchhHHHHHHHHHhcCCeEEEEecccccCCchhhhcC--ceEe
Confidence 67888886432 3489999994 433 245677889999987654 3556555443110 0011
Q ss_pred hcCCCccEEEEeCHHHHHHHHHHHHh
Q 026235 98 NADTIFDWIIITSPEAGSVFLEAWKE 123 (241)
Q Consensus 98 ~~l~~~d~IiFTS~~aV~~f~~~l~~ 123 (241)
+ -.+|-=.++.+.-|+-+++.+..
T Consensus 67 -d-w~f~dg~ppp~qvv~~w~~l~~~ 90 (173)
T KOG2836|consen 67 -D-WPFDDGAPPPNQVVDDWLSLVKT 90 (173)
T ss_pred -e-cccccCCCCchHHHHHHHHHHHH
Confidence 1 23444467888999999987653
No 349
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=47.50 E-value=1.7e+02 Score=24.49 Aligned_cols=88 Identities=15% Similarity=0.085 Sum_probs=49.7
Q ss_pred CCeEEEeCCCCC------hHHHHHHHHHCCCcEEEeceEEEeeCCC----chHHHHHHhcCCCccEEEEeCHHHHHHHHH
Q 026235 50 NPKVVVTRERGK------NGKLIKALAKHRIDCLELPLIQHAQGPD----TDRLSSVLNADTIFDWIIITSPEAGSVFLE 119 (241)
Q Consensus 50 g~~VLitR~~~~------~~~l~~~L~~~G~~v~~~P~~~~~~~~~----~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~ 119 (241)
.++|++..+... ..-+.+.++++|..+...+........+ ...+.+.++....+|+|+.++-.....+..
T Consensus 109 ~~~i~~i~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~ 188 (265)
T cd01543 109 FRHFAFYGLPGARWSDEREEAFRQLVAEAGYECSFFYRGLSTDAQSWEEEQEELAQWLQSLPKPVGIFACTDARARQLLE 188 (265)
T ss_pred CcEEEEEcCCCCHHHHHHHHHHHHHHHHcCCccccccCccccccccHHHHHHHHHHHHhcCCCCcEEEecChHHHHHHHH
Confidence 456776654432 1234556777787653222111111111 123445554334678888888777777888
Q ss_pred HHHhcCC---CCcEEEEeCHH
Q 026235 120 AWKEAGT---PNVRIGVVGAG 137 (241)
Q Consensus 120 ~l~~~~~---~~~~i~aIG~~ 137 (241)
.+.+.++ +++.+++.+..
T Consensus 189 ~l~~~g~~vp~di~vigfd~~ 209 (265)
T cd01543 189 ACRRAGIAVPEEVAVLGVDND 209 (265)
T ss_pred HHHHhCCCCCCceEEEeeCCc
Confidence 8877765 36777777743
No 350
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=47.46 E-value=1.7e+02 Score=25.61 Aligned_cols=90 Identities=12% Similarity=0.067 Sum_probs=49.4
Q ss_pred ccCCCCCCCeEEEeCCCC-ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCC-CccEEE--EeCHHHHHHHH
Q 026235 43 SASASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT-IFDWII--ITSPEAGSVFL 118 (241)
Q Consensus 43 ~~~~~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~-~~d~Ii--FTS~~aV~~f~ 118 (241)
+....++|+++|||.... -...+++.|.++|+.+...-.- .....+.+.+.+...+ ...++. +++..+++.++
T Consensus 5 ~~~~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~---~~~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~ 81 (306)
T PRK07792 5 TNTTDLSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVA---SALDASDVLDEIRAAGAKAVAVAGDISQRATADELV 81 (306)
T ss_pred cCCcCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCC---chhHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHH
Confidence 344668899999998764 3677889999999987643211 1011122223332211 122221 46777888887
Q ss_pred HHHHhcCCCCcEEEEeC
Q 026235 119 EAWKEAGTPNVRIGVVG 135 (241)
Q Consensus 119 ~~l~~~~~~~~~i~aIG 135 (241)
+...+.+.-+.-|.+.|
T Consensus 82 ~~~~~~g~iD~li~nAG 98 (306)
T PRK07792 82 ATAVGLGGLDIVVNNAG 98 (306)
T ss_pred HHHHHhCCCCEEEECCC
Confidence 76554332233344444
No 351
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=47.29 E-value=1.2e+02 Score=25.35 Aligned_cols=32 Identities=6% Similarity=0.042 Sum_probs=25.6
Q ss_pred CCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEE
Q 026235 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLE 78 (241)
Q Consensus 47 ~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~ 78 (241)
.+.+++||||..... ...+.+.|.++|+++..
T Consensus 8 ~l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~ 40 (255)
T PRK06113 8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVV 40 (255)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHCCCeEEE
Confidence 467899999988754 67788889999988764
No 352
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=47.27 E-value=1.1e+02 Score=26.56 Aligned_cols=47 Identities=17% Similarity=0.259 Sum_probs=33.6
Q ss_pred CCCHHHHHHHhhhCCCCccEEEEEcc--CCCchhHHHHHHhCCCeeeEeee
Q 026235 161 KATGKILASELPKNGKKKCTVLYPAS--AKASNEIEEGLSNRGFEVVRLNT 209 (241)
Q Consensus 161 ~~t~e~L~~~l~~~~~~~~~iL~~~g--~~~~~~L~~~L~~~G~~V~~~~v 209 (241)
..++.++++++..... +||-++.. +.....+.+.|++.|++|....-
T Consensus 105 tt~~~A~~~AL~alg~--~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~~~ 153 (239)
T TIGR02990 105 VTPSSAAVDGLAALGV--RRISLLTPYTPETSRPMAQYFAVRGFEIVNFTC 153 (239)
T ss_pred eCHHHHHHHHHHHcCC--CEEEEECCCcHHHHHHHHHHHHhCCcEEeeeec
Confidence 3467888888887754 56665544 44556788899999999877744
No 353
>PF12261 T_hemolysin: Thermostable hemolysin; InterPro: IPR022050 This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 228 amino acids in length. T_hemolysin is a pore-forming toxin of bacteria, able to lyse erythrocytes from a number of mammalian species.
Probab=47.08 E-value=22 Score=29.53 Aligned_cols=72 Identities=13% Similarity=0.219 Sum_probs=47.6
Q ss_pred HHHHHHHHC-CCcEEEeceEEEeeCCCc-----h----HHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEE
Q 026235 64 KLIKALAKH-RIDCLELPLIQHAQGPDT-----D----RLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGV 133 (241)
Q Consensus 64 ~l~~~L~~~-G~~v~~~P~~~~~~~~~~-----~----~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~a 133 (241)
++...+.+. |..+..--++|+--+... . .+...+ ....++|++||....+++.+..+ ++....
T Consensus 69 piE~~l~~~~g~~v~R~~IvEvGnLAs~~~g~~~~l~~~l~~~L-~~~g~~w~vfTaT~~lr~~~~rl------gl~~~~ 141 (179)
T PF12261_consen 69 PIEQLLSRRFGRPVSRSQIVEVGNLASFSPGAARLLFAALAQLL-AQQGFEWVVFTATRQLRNLFRRL------GLPPTV 141 (179)
T ss_pred cHHHHHHhhcCCCcchhheeEeechhhcCcccHHHHHHHHHHHH-HHCCCCEEEEeCCHHHHHHHHHc------CCCcee
Confidence 444555444 666777777776544321 1 122223 33789999999999999999865 356777
Q ss_pred eCHHHHHHH
Q 026235 134 VGAGTASIF 142 (241)
Q Consensus 134 IG~~Ta~~L 142 (241)
+|++..+.|
T Consensus 142 La~Ad~~rl 150 (179)
T PF12261_consen 142 LADADPSRL 150 (179)
T ss_pred ccccCHhHc
Confidence 788877777
No 354
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=47.05 E-value=1.1e+02 Score=27.89 Aligned_cols=41 Identities=7% Similarity=0.059 Sum_probs=32.0
Q ss_pred ccccccCCCCCCCeEEEeCCCC-ChHHHHHHHHHCCCcEEEe
Q 026235 39 SDATSASASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLEL 79 (241)
Q Consensus 39 ~~~~~~~~~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~ 79 (241)
+-++.+.....+|+||||.... -+..+.+.|.++|.+|..+
T Consensus 10 ~~~~~~~~~~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v 51 (370)
T PLN02695 10 ELEREPYWPSEKLRICITGAGGFIASHIARRLKAEGHYIIAS 51 (370)
T ss_pred hcCCCCCCCCCCCEEEEECCccHHHHHHHHHHHhCCCEEEEE
Confidence 3455666666889999998864 4778999999999988765
No 355
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=46.91 E-value=1.4e+02 Score=25.19 Aligned_cols=46 Identities=17% Similarity=0.029 Sum_probs=32.8
Q ss_pred CCHHHHHHHhhhC-----------CCCccEEEEE-ccCCCchhHHHHHHhCCCeeeEe
Q 026235 162 ATGKILASELPKN-----------GKKKCTVLYP-ASAKASNEIEEGLSNRGFEVVRL 207 (241)
Q Consensus 162 ~t~e~L~~~l~~~-----------~~~~~~iL~~-~g~~~~~~L~~~L~~~G~~V~~~ 207 (241)
-|+.+.++.|..+ ...|++++++ ||+....-|...|.++|++|..+
T Consensus 35 CTp~avi~lL~~~~i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~ 92 (197)
T cd01079 35 CTPLAIVKILEFLGIYNKILPYGNRLYGKTITIINRSEVVGRPLAALLANDGARVYSV 92 (197)
T ss_pred CCHHHHHHHHHHhCCcccccccCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEE
Confidence 4777787777643 2457776555 55555566889999999999877
No 356
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=46.85 E-value=1e+02 Score=25.70 Aligned_cols=31 Identities=16% Similarity=0.084 Sum_probs=24.0
Q ss_pred CCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEE
Q 026235 48 NSNPKVVVTRERGK-NGKLIKALAKHRIDCLE 78 (241)
Q Consensus 48 l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~ 78 (241)
++|+++|||..... ...+.+.|.++|+++..
T Consensus 5 ~~~~~vlItGasg~iG~~la~~l~~~G~~v~~ 36 (262)
T PRK13394 5 LNGKTAVVTGAASGIGKEIALELARAGAAVAI 36 (262)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCeEEE
Confidence 56889999988653 56788888889988753
No 357
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=46.75 E-value=1.9e+02 Score=24.81 Aligned_cols=154 Identities=12% Similarity=-0.013 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcC--CCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD--TIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l--~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~ 140 (241)
..+.+.++++|+++.. .....+.+.-.+.++.+ ..+|+||+.+...-.-....... ...+++.+|..
T Consensus 55 ~gi~~~~~~~g~~~~~-----~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~~~~~~~~~~~~~---~~~pvv~~~~~--- 123 (309)
T PRK11041 55 RGIEVTAAEHGYLVLI-----GDCAHQNQQEKTFVNLIITKQIDGMLLLGSRLPFDASKEEQR---NLPPMVMANEF--- 123 (309)
T ss_pred HHHHHHHHHCCCEEEE-----EeCCCChHHHHHHHHHHHHcCCCEEEEecCCCChHHHHHHHh---cCCCEEEEccc---
Q ss_pred HHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEccCCC-------chhHHHHHHhCCCeeeEeeeeeee
Q 026235 141 IFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTE 213 (241)
Q Consensus 141 ~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~~~~~~iL~~~g~~~-------~~~L~~~L~~~G~~V~~~~vY~~~ 213 (241)
.... ++.....-....++..++.|.+... +++.++.+... ..-+.+.+++.|.++.....+...
T Consensus 124 -~~~~------~~~~V~~Dn~~~g~~a~~~l~~~G~--~~I~~l~~~~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~~~~~ 194 (309)
T PRK11041 124 -APEL------ELPTVHIDNLTAAFEAVNYLHELGH--KRIACIAGPEEMPLCHYRLQGYVQALRRCGITVDPQYIARGD 194 (309)
T ss_pred -cCCC------CCCEEEECcHHHHHHHHHHHHHcCC--ceEEEEeCCccccchHHHHHHHHHHHHHcCCCCCHHHeEeCC
Q ss_pred cCCCChHHHHHHc----CCCCEEEEEC
Q 026235 214 PVHHVDQTVLKQA----LSIPVVAVAS 236 (241)
Q Consensus 214 ~~~~~~~~~~~~l----~~id~IvFtS 236 (241)
.......+....+ ..+|+|+.++
T Consensus 195 ~~~~~~~~~~~~~l~~~~~~~ai~~~~ 221 (309)
T PRK11041 195 FTFEAGAKALKQLLDLPQPPTAVFCHS 221 (309)
T ss_pred CCHHHHHHHHHHHHcCCCCCCEEEEcC
No 358
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=46.71 E-value=1.5e+02 Score=26.26 Aligned_cols=87 Identities=17% Similarity=0.151 Sum_probs=47.6
Q ss_pred CHHHHHHHHHhhhccCCCCce-eecCCCCCHHHHHHHhhhCCCCccEEEEEccCCCchhHHHHHHhCCCeeeEeeeeeee
Q 026235 135 GAGTASIFEEVIQSSKCSLDV-AFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTE 213 (241)
Q Consensus 135 G~~Ta~~L~~~~~~~~~Gi~~-~~~p~~~t~e~L~~~l~~~~~~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~ 213 (241)
|+.-.+.+.+++ |+++ .+.-...+.+++. .+.....++ ++++... .-......++..|+++..+.
T Consensus 49 ~~~lr~~la~~~-----~~~~~~i~~t~G~~~~i~-~~~~~l~~g-~vl~~~p--~y~~~~~~~~~~g~~~~~~~----- 114 (330)
T TIGR01140 49 YDELRAAAAAYY-----GLPAASVLPVNGAQEAIY-LLPRLLAPG-RVLVLAP--TYSEYARAWRAAGHEVVELP----- 114 (330)
T ss_pred HHHHHHHHHHHh-----CCChhhEEECCCHHHHHH-HHHHHhCCC-eEEEeCC--CcHHHHHHHHHcCCEEEEeC-----
Confidence 466666666652 6642 2222334445444 343333334 6666533 33456677788887776654
Q ss_pred cCCCChHHHHHHcCCCCEEEEECCcc
Q 026235 214 PVHHVDQTVLKQALSIPVVAVASPSA 239 (241)
Q Consensus 214 ~~~~~~~~~~~~l~~id~IvFtSps~ 239 (241)
..+++.+.+.+.+.|++++|..
T Consensus 115 ----d~~~l~~~~~~~~~v~i~~p~N 136 (330)
T TIGR01140 115 ----DLDRLPAALEELDVLVLCNPNN 136 (330)
T ss_pred ----CHHHHHhhcccCCEEEEeCCCC
Confidence 1233444445667888888753
No 359
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=46.48 E-value=1.1e+02 Score=26.07 Aligned_cols=80 Identities=20% Similarity=0.149 Sum_probs=48.8
Q ss_pred CeEEEeCCCCC--hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHH------------HH
Q 026235 51 PKVVVTRERGK--NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG------------SV 116 (241)
Q Consensus 51 ~~VLitR~~~~--~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV------------~~ 116 (241)
|||+|.+-... ..++.+.|++.|+++..++.- +. .+.++|.||+...... ..
T Consensus 1 ~~v~Vl~~~G~n~~~~~~~al~~~G~~~~~i~~~------~~--------~l~~~d~lilpGG~~~~d~~~~~~~~~~~~ 66 (227)
T TIGR01737 1 MKVAVIRFPGTNCDRDTVYALRLLGVDAEIVWYE------DG--------SLPDYDGVVLPGGFSYGDYLRAGAIAAASP 66 (227)
T ss_pred CeEEEEeCCCcCcHHHHHHHHHHCCCeEEEEecC------CC--------CCCCCCEEEECCCCcccccccccchhcchH
Confidence 46777766543 346889999999998877431 11 1457899999885321 11
Q ss_pred HHHHHHhcCCCCcEEEEeCHHHHHHHHHh
Q 026235 117 FLEAWKEAGTPNVRIGVVGAGTASIFEEV 145 (241)
Q Consensus 117 f~~~l~~~~~~~~~i~aIG~~Ta~~L~~~ 145 (241)
+.+.+.+....+.++++|.-.. +.|.+.
T Consensus 67 ~~~~l~~~~~~g~pvlgIC~G~-QlLa~~ 94 (227)
T TIGR01737 67 IMQEVREFAEKGVPVLGICNGF-QILVEA 94 (227)
T ss_pred HHHHHHHHHHcCCEEEEECHHH-HHHHHc
Confidence 2233332222468888888764 556654
No 360
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=46.37 E-value=56 Score=25.80 Aligned_cols=56 Identities=9% Similarity=0.113 Sum_probs=29.6
Q ss_pred HHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEcc-----CCCchhHHHHHHhCCCe
Q 026235 139 ASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPAS-----AKASNEIEEGLSNRGFE 203 (241)
Q Consensus 139 a~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~~~~~~iL~~~g-----~~~~~~L~~~L~~~G~~ 203 (241)
+..|+.. |+++......-+.|.++++..++.. .++-+.+ ...-+.+.+.|+++|..
T Consensus 22 ~~~l~~~------GfeVi~LG~~v~~e~~v~aa~~~~a---diVglS~l~~~~~~~~~~~~~~l~~~gl~ 82 (134)
T TIGR01501 22 DHAFTNA------GFNVVNLGVLSPQEEFIKAAIETKA---DAILVSSLYGHGEIDCKGLRQKCDEAGLE 82 (134)
T ss_pred HHHHHHC------CCEEEECCCCCCHHHHHHHHHHcCC---CEEEEecccccCHHHHHHHHHHHHHCCCC
Confidence 3445666 7776666666666777766665432 2222222 11224556666666653
No 361
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=46.21 E-value=24 Score=27.34 Aligned_cols=49 Identities=14% Similarity=0.135 Sum_probs=32.5
Q ss_pred hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcC-CCccEEEEeCHHHH
Q 026235 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD-TIFDWIIITSPEAG 114 (241)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l-~~~d~IiFTS~~aV 114 (241)
...+.+.|++.|+++...+... ++.+.+.+.+++. ..+|.||.|-..++
T Consensus 21 ~~~l~~~l~~~G~~v~~~~~v~----Dd~~~i~~~i~~~~~~~DlvittGG~g~ 70 (133)
T cd00758 21 GPALEALLEDLGCEVIYAGVVP----DDADSIRAALIEASREADLVLTTGGTGV 70 (133)
T ss_pred HHHHHHHHHHCCCEEEEeeecC----CCHHHHHHHHHHHHhcCCEEEECCCCCC
Confidence 4578888999998876654432 3445566665432 45898888866554
No 362
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=46.20 E-value=58 Score=25.28 Aligned_cols=50 Identities=12% Similarity=0.122 Sum_probs=36.0
Q ss_pred HHHHHhcCCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhC
Q 026235 118 LEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (241)
Q Consensus 118 ~~~l~~~~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~ 174 (241)
.+.+.+.+.+-+-+-=||+..-+.|++. |+++.. .+..+.+..++.+.+-
T Consensus 58 a~~l~~~gvdvvi~~~iG~~a~~~l~~~------GIkv~~-~~~~~V~e~i~~~~~g 107 (121)
T COG1433 58 AELLVDEGVDVVIASNIGPNAYNALKAA------GIKVYV-APGGTVEEAIKAFLEG 107 (121)
T ss_pred HHHHHHcCCCEEEECccCHHHHHHHHHc------CcEEEe-cCCCCHHHHHHHHhcC
Confidence 4555566655455555999999999999 999844 4457888777777643
No 363
>PLN02461 Probable pyruvate kinase
Probab=46.12 E-value=94 Score=30.19 Aligned_cols=73 Identities=12% Similarity=-0.012 Sum_probs=44.7
Q ss_pred cEEEEe-CHHHHHHHHHHHHhcCCCCcEEEEeC---------------HHHHHHHHHhhhccCCCCceeecCC------C
Q 026235 104 DWIIIT-SPEAGSVFLEAWKEAGTPNVRIGVVG---------------AGTASIFEEVIQSSKCSLDVAFSPS------K 161 (241)
Q Consensus 104 d~IiFT-S~~aV~~f~~~l~~~~~~~~~i~aIG---------------~~Ta~~L~~~~~~~~~Gi~~~~~p~------~ 161 (241)
-.|+|| |.+..+.+..+ .+.++|+++- +.|++.|.=+ ||+.+.+.+. .
T Consensus 398 aIiv~T~sG~tA~~iSk~-----RP~~pIia~t~~~~~~~~~~w~~~~~~~ar~l~L~-----~GV~P~~~~~~~~~~~~ 467 (511)
T PLN02461 398 LIVVLTRGGTTARLVAKY-----RPAVPILSVVVPEITTDSFDWSCSDEAPARHSLIY-----RGLIPVLAEGSAKATDS 467 (511)
T ss_pred EEEEECCCcHHHHHHHhh-----CCCCCEEEEecCcccccccccccCCHHHhhhhhee-----cceEEEEeccccccccc
Confidence 355666 55555554442 2568898885 5777777644 5998865543 2
Q ss_pred CCHHHHHHHhhh------CCCCccEEEEEcc
Q 026235 162 ATGKILASELPK------NGKKKCTVLYPAS 186 (241)
Q Consensus 162 ~t~e~L~~~l~~------~~~~~~~iL~~~g 186 (241)
.+.+.+++...+ ...+|..++++.|
T Consensus 468 ~~~~~~i~~a~~~~~~~g~~~~Gd~vvvv~~ 498 (511)
T PLN02461 468 ESTEEILEAAIEHAKKKGLCKPGDSVVALHR 498 (511)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCcCEEEEEec
Confidence 455666544432 2346788888866
No 364
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=46.07 E-value=93 Score=26.16 Aligned_cols=89 Identities=15% Similarity=0.069 Sum_probs=48.8
Q ss_pred CCeEEEeCCCCC-------hHHHHHHHHHCCCcEEEeceEEEeeCCC--chHHHHHHhcCCCccEEEEeCHHHHHHHHHH
Q 026235 50 NPKVVVTRERGK-------NGKLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLNADTIFDWIIITSPEAGSVFLEA 120 (241)
Q Consensus 50 g~~VLitR~~~~-------~~~l~~~L~~~G~~v~~~P~~~~~~~~~--~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~ 120 (241)
.++|++...... ..-+.+.++++|.++.....+......+ ...+.+.++...++|+|++++......++..
T Consensus 125 ~~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~~~~a~g~~~~ 204 (275)
T cd06295 125 RRRIAFLGGPQDMPEGEERLEGYREALAEAGLPLDPRLVAPGDFTEESGRAAMRALLERGPDFDAVFAASDLMALGALRA 204 (275)
T ss_pred CCeEEEEcCCCCcchhHHHHHHHHHHHHHcCCCCChhhEEeccCCHHHHHHHHHHHHhCCCCCCEEEECCcHHHHHHHHH
Confidence 356666544221 2335566777775443222222111111 1234455544456889988887766677777
Q ss_pred HHhcCC---CCcEEEEeCHHH
Q 026235 121 WKEAGT---PNVRIGVVGAGT 138 (241)
Q Consensus 121 l~~~~~---~~~~i~aIG~~T 138 (241)
+.+.++ .++.+++++...
T Consensus 205 l~~~g~~ip~~i~ii~~d~~~ 225 (275)
T cd06295 205 LREAGRRVPEDVAVVGFDDIP 225 (275)
T ss_pred HHHhCCCCccceEEEeeCCch
Confidence 777665 367788887554
No 365
>PRK05670 anthranilate synthase component II; Provisional
Probab=45.87 E-value=1.6e+02 Score=23.93 Aligned_cols=83 Identities=19% Similarity=0.119 Sum_probs=50.1
Q ss_pred CCCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEe----CHHHHHHHHHHHHhcCCCCcEEEE
Q 026235 58 ERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAWKEAGTPNVRIGV 133 (241)
Q Consensus 58 ~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFT----S~~aV~~f~~~l~~~~~~~~~i~a 133 (241)
...-...+.+.|+++|+++..+|.... +.+ .++.+ .+|.||++ |+.........+... ..+++++.
T Consensus 8 ~d~f~~~i~~~l~~~g~~~~v~~~~~~----~~~----~~~~~-~~dglIlsgGpg~~~d~~~~~~~l~~~-~~~~PvLG 77 (189)
T PRK05670 8 YDSFTYNLVQYLGELGAEVVVYRNDEI----TLE----EIEAL-NPDAIVLSPGPGTPAEAGISLELIREF-AGKVPILG 77 (189)
T ss_pred CCchHHHHHHHHHHCCCcEEEEECCCC----CHH----HHHhC-CCCEEEEcCCCCChHHcchHHHHHHHh-cCCCCEEE
Confidence 344567899999999999987775431 111 12233 38999997 665443344444332 24578888
Q ss_pred eCHHHHHHHHHhhhccCCCCcee
Q 026235 134 VGAGTASIFEEVIQSSKCSLDVA 156 (241)
Q Consensus 134 IG~~Ta~~L~~~~~~~~~Gi~~~ 156 (241)
|.-.-.-..... |-++.
T Consensus 78 IClG~Qlla~al------Gg~v~ 94 (189)
T PRK05670 78 VCLGHQAIGEAF------GGKVV 94 (189)
T ss_pred ECHHHHHHHHHh------CCEEE
Confidence 877643333444 86653
No 366
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=45.82 E-value=1.1e+02 Score=25.42 Aligned_cols=89 Identities=13% Similarity=0.064 Sum_probs=48.6
Q ss_pred CCeEEEeCCCCC-------hHHHHHHHHHCCCcEEEeceEEEeeCCC--chHHHHHHhcC-CCccEEEEeCHHHHHHHHH
Q 026235 50 NPKVVVTRERGK-------NGKLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLNAD-TIFDWIIITSPEAGSVFLE 119 (241)
Q Consensus 50 g~~VLitR~~~~-------~~~l~~~L~~~G~~v~~~P~~~~~~~~~--~~~l~~~l~~l-~~~d~IiFTS~~aV~~f~~ 119 (241)
.++|++..+... ..-+.+.++++|.++.....+......+ ...+.+.+... ..+|+|+..+-.....+..
T Consensus 116 ~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ai~~~~d~~A~g~~~ 195 (264)
T cd06274 116 PEEVLFLGGLPELSPSRERLAGFRQALADAGLPVQPDWIYAEGYSPESGYQLMAELLARLGRLPRALFTTSYTLLEGVLR 195 (264)
T ss_pred CCcEEEEeCCCcccchHHHHHHHHHHHHHcCCCCCcceeecCCCChHHHHHHHHHHHccCCCCCcEEEEcChHHHHHHHH
Confidence 356666644322 2334556777775432221111111011 12344445333 4578888888777777778
Q ss_pred HHHhcCC---CCcEEEEeCHHH
Q 026235 120 AWKEAGT---PNVRIGVVGAGT 138 (241)
Q Consensus 120 ~l~~~~~---~~~~i~aIG~~T 138 (241)
.+.+.++ +++.+++++...
T Consensus 196 al~~~g~~ip~dv~v~g~d~~~ 217 (264)
T cd06274 196 FLRERPGLAPSDLRIATFDDHP 217 (264)
T ss_pred HHHHcCCCCCcceEEEEeCCHH
Confidence 8877765 367888888653
No 367
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=45.48 E-value=68 Score=26.80 Aligned_cols=50 Identities=16% Similarity=0.094 Sum_probs=32.8
Q ss_pred HHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCC---CCcEEEEeCHHHHHHH
Q 026235 93 LSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGAGTASIF 142 (241)
Q Consensus 93 l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~---~~~~i~aIG~~Ta~~L 142 (241)
+...+..-..+|+|+.++-.....+...+.+.++ +++.+++.+......+
T Consensus 163 ~~~~l~~~~~~~ai~~~~d~~a~~~~~~l~~~g~~vp~dv~vvg~d~~~~~~~ 215 (261)
T cd06272 163 AKKLLKESDLPTAIICGSYDIALGVLSALNKQGISIPEDIEIISYDNIPQMAI 215 (261)
T ss_pred HHHHHcCCCCCCEEEECCcHHHHHHHHHHHHhCCCCCCceEEEeeCChhHHhh
Confidence 3344433345788888887766667777777765 3788888887644443
No 368
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=45.48 E-value=65 Score=27.05 Aligned_cols=44 Identities=18% Similarity=0.244 Sum_probs=29.0
Q ss_pred HHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCCC--CcEEEEeCH
Q 026235 93 LSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTP--NVRIGVVGA 136 (241)
Q Consensus 93 l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~--~~~i~aIG~ 136 (241)
+.+.+......++|+..+-......++.+.+.++. ++.+++++-
T Consensus 174 ~~~~l~~~~~~~ai~~~~d~~a~~~~~~l~~~g~~~~di~ivg~d~ 219 (272)
T cd06301 174 MENWLSSGGKIDAVVANNDEMALGAIMALKAAGKSDKDVPVAGIDG 219 (272)
T ss_pred HHHHHHhCCCCCEEEECCCchHHHHHHHHHHcCCCCCCcEEEeeCC
Confidence 44455444567888887777777777777777664 567777653
No 369
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=45.47 E-value=1.8e+02 Score=25.93 Aligned_cols=147 Identities=18% Similarity=0.167 Sum_probs=80.5
Q ss_pred HHHHHHHCCCcEEEeceEEEeeCCCchHHHHHH---hcCCCccEEEEeCH--HHHH--HHHHHHHh-cCCCCcEEEEeCH
Q 026235 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NADTIFDWIIITSP--EAGS--VFLEAWKE-AGTPNVRIGVVGA 136 (241)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l---~~l~~~d~IiFTS~--~aV~--~f~~~l~~-~~~~~~~i~aIG~ 136 (241)
..+.+++.|+++..+-+-+.. ..+++.+.+ +.....|.|+.--| ..++ .+++.+.. ...++..-.-.|.
T Consensus 52 k~k~~~~~Gi~~~~~~l~~~~---~~~el~~~I~~lN~D~~V~GIivq~PlP~~i~~~~i~~~I~p~KDVDGl~~~n~g~ 128 (282)
T PRK14180 52 KEKACAQVGIDSQVITLPEHT---TESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPEKDVDGFHPTNVGR 128 (282)
T ss_pred HHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhhcCccccccccChhhHHH
Confidence 345677889887765443221 123344444 44477899998877 2222 12222221 1123444444443
Q ss_pred HHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCC--CCccEEEEE-ccCCCchhHHHHHHhCCCeeeEeeeeeee
Q 026235 137 GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEEGLSNRGFEVVRLNTYTTE 213 (241)
Q Consensus 137 ~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~--~~~~~iL~~-~g~~~~~~L~~~L~~~G~~V~~~~vY~~~ 213 (241)
-- . |-...+.| -|+.+.++.|..+. ..|++++++ ||.....-|...|.++|++|.-|.-..
T Consensus 129 l~------~------g~~~~~~P--cTp~aii~lL~~y~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T-- 192 (282)
T PRK14180 129 LQ------L------RDKKCLES--CTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT-- 192 (282)
T ss_pred Hh------c------CCCCCcCC--CCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC--
Confidence 21 2 31112444 48999998888763 457777665 445555668889999999996664332
Q ss_pred cCCCChHHHHHHcCCCCEEEEEC
Q 026235 214 PVHHVDQTVLKQALSIPVVAVAS 236 (241)
Q Consensus 214 ~~~~~~~~~~~~l~~id~IvFtS 236 (241)
.+ +.+.+.+.|+|+-.-
T Consensus 193 --~d----l~~~~k~ADIvIsAv 209 (282)
T PRK14180 193 --TD----LKSHTTKADILIVAV 209 (282)
T ss_pred --CC----HHHHhhhcCEEEEcc
Confidence 11 222235677776543
No 370
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=45.47 E-value=1.3e+02 Score=25.77 Aligned_cols=47 Identities=15% Similarity=0.205 Sum_probs=35.0
Q ss_pred HHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHH
Q 026235 92 RLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGT 138 (241)
Q Consensus 92 ~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~T 138 (241)
.+.+.|....++|+|+.++-......++.+.+.+++++.+++.|..+
T Consensus 176 ~~~~~l~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~di~vvg~d~~~ 222 (294)
T cd06316 176 IANAMLTQNPDLKGIYAVWDVPAEGVIAALRAAGRDDIKVTTVDLGL 222 (294)
T ss_pred HHHHHHHhCCCeeEEEeCCCchhHHHHHHHHHcCCCCceEEEeCCCc
Confidence 34555543456888888887888888888888887778888888654
No 371
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=45.47 E-value=1.9e+02 Score=24.62 Aligned_cols=110 Identities=9% Similarity=0.040 Sum_probs=65.3
Q ss_pred CeEEEeCCCC-ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeC----HHHHHHHHHHHHhcC
Q 026235 51 PKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVFLEAWKEAG 125 (241)
Q Consensus 51 ~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS----~~aV~~f~~~l~~~~ 125 (241)
++||+.-... -.+.+...|++.|+++.... +..+..+.+.. . +|.|+.== -+|...+-. +....
T Consensus 1 ~~ILiveDd~~i~~~l~~~L~~~g~~v~~~~--------~~~~a~~~~~~-~-~dlviLD~~lP~~dG~~~~~~-iR~~~ 69 (229)
T COG0745 1 MRILLVEDDPELAELLKEYLEEEGYEVDVAA--------DGEEALEAARE-Q-PDLVLLDLMLPDLDGLELCRR-LRAKK 69 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEEC--------CHHHHHHHHhc-C-CCEEEEECCCCCCCHHHHHHH-HHhhc
Confidence 4677776654 46678889999999988653 22233333422 3 99988743 456554444 33223
Q ss_pred CCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhC
Q 026235 126 TPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (241)
Q Consensus 126 ~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~ 174 (241)
....+|+.+...+...=+-. ---.|-. |++.+.++.+.|+.-+...
T Consensus 70 ~~~~PIi~Lta~~~~~d~v~--gl~~GAD-DYl~KPf~~~EL~ARi~a~ 115 (229)
T COG0745 70 GSGPPIIVLTARDDEEDRVL--GLEAGAD-DYLTKPFSPRELLARLRAL 115 (229)
T ss_pred CCCCcEEEEECCCcHHHHHH--HHhCcCC-eeeeCCCCHHHHHHHHHHH
Confidence 35566777666543332222 0000543 7888899999998777543
No 372
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=45.33 E-value=65 Score=24.48 Aligned_cols=79 Identities=15% Similarity=0.134 Sum_probs=53.5
Q ss_pred CCCCeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCC
Q 026235 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT 126 (241)
Q Consensus 48 l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~ 126 (241)
..|..|+...+....+++.+...+.+++++.+........+...++.+.+++.+.-+..++...+..+.-.+.+.+.|.
T Consensus 25 ~~G~~vi~lG~~vp~e~~~~~a~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~~~~~~~G~ 103 (122)
T cd02071 25 DAGFEVIYTGLRQTPEEIVEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGIIPPEDYELLKEMGV 103 (122)
T ss_pred HCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCC
Confidence 3578899999888888999999999999999888765544333444445544333366677775555554555556554
No 373
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=45.29 E-value=34 Score=32.39 Aligned_cols=71 Identities=14% Similarity=0.204 Sum_probs=45.1
Q ss_pred HHHHHHhhhCCCCccEEEEEccCCCchhHHHHHHhCCCeeeEeeeeeeecCCCChHHHHHHc--CCCCEEEEECCccC
Q 026235 165 KILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPSAV 240 (241)
Q Consensus 165 e~L~~~l~~~~~~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~l--~~id~IvFtSps~v 240 (241)
--|++...+.... +++||+.|+++..-+.-.-+..|+....+.+|--...+ ++...+ .++|.++.=|-.++
T Consensus 108 TLLLQva~~lA~~-~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e----~I~~~l~~~~p~lvVIDSIQT~ 180 (456)
T COG1066 108 TLLLQVAARLAKR-GKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLE----DIIAELEQEKPDLVVIDSIQTL 180 (456)
T ss_pred HHHHHHHHHHHhc-CcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHH----HHHHHHHhcCCCEEEEecccee
Confidence 3455555555433 48999999998887777777777766666666433333 233333 57888888776543
No 374
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=45.12 E-value=64 Score=27.75 Aligned_cols=83 Identities=19% Similarity=0.153 Sum_probs=53.9
Q ss_pred CCCCcccceeccccccccCCCCCCCeEEEeCCCC-------ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhc
Q 026235 27 PLPFQFSRIQASSDATSASASNSNPKVVVTRERG-------KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA 99 (241)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~l~g~~VLitR~~~-------~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~ 99 (241)
+.+.+|-.|+.- .++++|...-... --++..+.|+++|.++.++++.+. +.+.+...+
T Consensus 18 ~~~~~~i~n~l~---------g~~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~l~~~----~~~~Ie~~l-- 82 (224)
T COG3340 18 EHFLPFIANFLQ---------GKRKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSELHLSKP----PLAAIENKL-- 82 (224)
T ss_pred hhhhHHHHHHhc---------CCCceEEEEecCccccchHHHHHHHHHHHHHcCCeeeeeeccCC----CHHHHHHhh--
Confidence 355677777763 1134766443222 134567789999999999988763 334455544
Q ss_pred CCCccEEEEeCHHHHHHHHHHHHhcCC
Q 026235 100 DTIFDWIIITSPEAGSVFLEAWKEAGT 126 (241)
Q Consensus 100 l~~~d~IiFTS~~aV~~f~~~l~~~~~ 126 (241)
.+.|.|...-.|...- +..+++.++
T Consensus 83 -~~~d~IyVgGGNTF~L-L~~lke~gl 107 (224)
T COG3340 83 -MKADIIYVGGGNTFNL-LQELKETGL 107 (224)
T ss_pred -hhccEEEECCchHHHH-HHHHHHhCc
Confidence 6789999999998654 444666654
No 375
>PRK08264 short chain dehydrogenase; Validated
Probab=45.03 E-value=1.7e+02 Score=24.06 Aligned_cols=31 Identities=13% Similarity=0.110 Sum_probs=24.1
Q ss_pred CCCCCeEEEeCCCC-ChHHHHHHHHHCCC-cEE
Q 026235 47 SNSNPKVVVTRERG-KNGKLIKALAKHRI-DCL 77 (241)
Q Consensus 47 ~l~g~~VLitR~~~-~~~~l~~~L~~~G~-~v~ 77 (241)
.+.+++||||.... -...+++.|.++|+ .|.
T Consensus 3 ~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~ 35 (238)
T PRK08264 3 DIKGKVVLVTGANRGIGRAFVEQLLARGAAKVY 35 (238)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCcccEE
Confidence 45678999998754 36778888999998 654
No 376
>PF11731 Cdd1: Pathogenicity locus; InterPro: IPR021725 Cdd1 is expressed as part of the pathogenicity locus operon in several different orders of bacteria []. Many members of the family are annotated as being putative mitomycin resistance proteins but this could not be confirmed.
Probab=45.02 E-value=19 Score=26.76 Aligned_cols=39 Identities=15% Similarity=0.051 Sum_probs=29.1
Q ss_pred EEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhC
Q 026235 130 RIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (241)
Q Consensus 130 ~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~ 174 (241)
.+=-||++|++-|... |+...--=...+.+.|-+.++..
T Consensus 16 ~iP~IG~a~a~DL~~L------Gi~s~~~L~g~dP~~Ly~~lc~~ 54 (93)
T PF11731_consen 16 DIPNIGKATAEDLRLL------GIRSPADLKGRDPEELYERLCAL 54 (93)
T ss_pred cCCCccHHHHHHHHHc------CCCCHHHHhCCCHHHHHHHHHHH
Confidence 3456999999999998 99752222467888888888764
No 377
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=44.97 E-value=32 Score=31.93 Aligned_cols=53 Identities=11% Similarity=0.088 Sum_probs=32.0
Q ss_pred ccEEEEEccCC-----CchhHHHHHHhCCCeeeEeeeeeeecCCCChH---HHHHHc--CCCCEEE
Q 026235 178 KCTVLYPASAK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQ---TVLKQA--LSIPVVA 233 (241)
Q Consensus 178 ~~~iL~~~g~~-----~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~---~~~~~l--~~id~Iv 233 (241)
.+|+|++++.. ..+.+.+.|++.|+++. +|.-.......+ +..+.+ .++|+|+
T Consensus 21 ~~k~liVtd~~~~~~g~~~~v~~~L~~~gi~~~---~f~~v~~~p~~~~v~~~~~~~~~~~~D~II 83 (398)
T cd08178 21 KKRAFIVTDRFMVKLGYVDKVIDVLKRRGVETE---VFSDVEPDPSLETVRKGLELMNSFKPDTII 83 (398)
T ss_pred CCeEEEEcChhHHhCccHHHHHHHHHHCCCeEE---EecCCCCCcCHHHHHHHHHHHHhcCCCEEE
Confidence 36899998753 22458889999987654 454433333222 333333 5789887
No 378
>PRK06196 oxidoreductase; Provisional
Probab=44.92 E-value=2.1e+02 Score=25.05 Aligned_cols=82 Identities=16% Similarity=0.131 Sum_probs=48.1
Q ss_pred CCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEE--EEeCHHHHHHHHHHHHh
Q 026235 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWI--IITSPEAGSVFLEAWKE 123 (241)
Q Consensus 47 ~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~I--iFTS~~aV~~f~~~l~~ 123 (241)
++.|++||||..... +..+++.|.++|++|... .+ +.+...+....+..+.++ =+++..+++.+++.+.+
T Consensus 23 ~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~--~R-----~~~~~~~~~~~l~~v~~~~~Dl~d~~~v~~~~~~~~~ 95 (315)
T PRK06196 23 DLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVP--AR-----RPDVAREALAGIDGVEVVMLDLADLESVRAFAERFLD 95 (315)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE--eC-----CHHHHHHHHHHhhhCeEEEccCCCHHHHHHHHHHHHh
Confidence 467899999988653 677888999999886643 11 112222222222223332 25788999988887654
Q ss_pred c-CCCCcEEEEeC
Q 026235 124 A-GTPNVRIGVVG 135 (241)
Q Consensus 124 ~-~~~~~~i~aIG 135 (241)
. +.-+.-|.+.|
T Consensus 96 ~~~~iD~li~nAg 108 (315)
T PRK06196 96 SGRRIDILINNAG 108 (315)
T ss_pred cCCCCCEEEECCC
Confidence 3 21234444444
No 379
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=44.72 E-value=1.3e+02 Score=24.99 Aligned_cols=31 Identities=19% Similarity=0.077 Sum_probs=22.7
Q ss_pred CCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEE
Q 026235 48 NSNPKVVVTRERGK-NGKLIKALAKHRIDCLE 78 (241)
Q Consensus 48 l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~ 78 (241)
+.|+++|||..... ...+.+.|.++|+++..
T Consensus 2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~ 33 (250)
T PRK08063 2 FSGKVALVTGSSRGIGKAIALRLAEEGYDIAV 33 (250)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEE
Confidence 45678888877643 66788888888887653
No 380
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=44.65 E-value=90 Score=26.02 Aligned_cols=45 Identities=18% Similarity=0.109 Sum_probs=30.6
Q ss_pred HHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCC---CCcEEEEeCHH
Q 026235 93 LSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGAG 137 (241)
Q Consensus 93 l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~---~~~~i~aIG~~ 137 (241)
+.+.+....+.|+|+.++......+...+.+.++ +++.+++.+..
T Consensus 174 ~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~iP~dv~vig~d~~ 221 (270)
T cd06294 174 LKKLLEQHPRPTAIVATDDLLALGVLKVLNELGLKVPEDLSIIGFNNS 221 (270)
T ss_pred HHHHHhCCCCCCEEEECChHHHHHHHHHHHHcCCCCCcceEEEeeCCh
Confidence 4444533346888888887777777777777765 36777777654
No 381
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=44.60 E-value=2.6e+02 Score=25.83 Aligned_cols=144 Identities=13% Similarity=0.065 Sum_probs=78.1
Q ss_pred CeEEEeCC--CCChHHHHHHHHHCCCcEE-EeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHh-cCC
Q 026235 51 PKVVVTRE--RGKNGKLIKALAKHRIDCL-ELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE-AGT 126 (241)
Q Consensus 51 ~~VLitR~--~~~~~~l~~~L~~~G~~v~-~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~-~~~ 126 (241)
.+|.+... .....++.+.|++.|+++. .+|- .+.++ +...+....++..++.+- ...+.+++ .+.
T Consensus 156 ~~VnliG~~~~~d~~el~~lL~~~Gi~v~~~~~d------~~~~~----~~~~~~a~~~~~~~~~~~-~~A~~Le~r~gi 224 (396)
T cd01979 156 RSLVLVGSLPDIVEDQLRRELEQLGIPVVGFLPP------RRYTD----LPVIGPGTYVLGIQPFLS-RTATTLMRRRKC 224 (396)
T ss_pred CceEEEEeCCcchHHHHHHHHHHcCCeEEEEeCC------CChHH----hhccCcceEEEEeChhHH-HHHHHHHHhcCC
Confidence 44555442 2235789999999999996 3331 11222 223445555666676654 34555554 344
Q ss_pred CCcEE-EEeCH-HHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhC--CCCccEEEEEccCCCchhHHHHHHhCCC
Q 026235 127 PNVRI-GVVGA-GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN--GKKKCTVLYPASAKASNEIEEGLSNRGF 202 (241)
Q Consensus 127 ~~~~i-~aIG~-~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~--~~~~~~iL~~~g~~~~~~L~~~L~~~G~ 202 (241)
+-..+ +-+|. .|.+.|++. ..++|.......+ ....+.+.+... ...|+++.+..+....-.+...|.+.|.
T Consensus 225 P~~~~~~P~G~~~t~~~l~~l--a~~~g~~~~~i~~--e~~~~~~~l~~~~~~l~Gkrv~i~g~~~~~~~la~~L~elGm 300 (396)
T cd01979 225 KLLSAPFPIGPDGTRAWLEAI--CSAFGIFPSVLAE--REARAWRALEPYLDLLRGKSIFFMGDNLLEIPLARFLTRCGM 300 (396)
T ss_pred CcccCCcCcChHHHHHHHHHH--HHHhCCChhHHHH--HHHHHHHHHHHHHHhhcCCEEEEECCchHHHHHHHHHHHCCC
Confidence 33332 22663 566666665 1223532211111 122344444432 2357898877554334568999999999
Q ss_pred eeeEeee
Q 026235 203 EVVRLNT 209 (241)
Q Consensus 203 ~V~~~~v 209 (241)
++..+..
T Consensus 301 ~vv~~~t 307 (396)
T cd01979 301 IVVEVGT 307 (396)
T ss_pred EEEeeCC
Confidence 9877643
No 382
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=44.48 E-value=45 Score=30.19 Aligned_cols=68 Identities=19% Similarity=0.130 Sum_probs=38.1
Q ss_pred CCHHHHHHHhhhCCCCccEEEEEccCCCc----hhHHHHHHhCCCeeeEeeeeeeecCCCChHHHHHHc--CCCCEEE
Q 026235 162 ATGKILASELPKNGKKKCTVLYPASAKAS----NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVA 233 (241)
Q Consensus 162 ~t~e~L~~~l~~~~~~~~~iL~~~g~~~~----~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~l--~~id~Iv 233 (241)
...+.+.+.+.+. ++|+|++.++... +.+.+.|++.|+++. ...+...+..+...+..+.. .++|.|+
T Consensus 9 g~~~~l~~~~~~~---~~r~livt~~~~~~~~~~~v~~~L~~~~i~~~-~~~~~~~p~~~~v~~~~~~~~~~~~D~II 82 (351)
T cd08170 9 GALDELGEYLARL---GKRALIIADEFVLDLVGAKIEESLAAAGIDAR-FEVFGGECTRAEIERLAEIARDNGADVVI 82 (351)
T ss_pred CHHHHHHHHHHHh---CCeEEEEECHHHHHHHHHHHHHHHHhCCCeEE-EEEeCCcCCHHHHHHHHHHHhhcCCCEEE
Confidence 3445666666654 3789988876433 456778888888764 33343332222112222222 4788876
No 383
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=44.48 E-value=96 Score=25.74 Aligned_cols=74 Identities=16% Similarity=0.017 Sum_probs=40.3
Q ss_pred HHHHHHHHCCCcEEEeceEEEeeCCC--chHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCC---CCcEEEEeCHH
Q 026235 64 KLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGAG 137 (241)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~--~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~---~~~~i~aIG~~ 137 (241)
-+.+.++++|.++.....+......+ ...+.+.+......|+|+.++......+...+.+.++ +++.+++++..
T Consensus 136 gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~~~~a~g~~~al~~~g~~~p~~v~v~g~d~~ 214 (267)
T cd06284 136 GYRQALAEAGLPADEELIQEGDFSLESGYAAARRLLALPDRPTAIFCFSDEMAIGAISALKELGLRVPEDISVVGFDDI 214 (267)
T ss_pred HHHHHHHHcCCCCCcceEEeCCCChHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCccceeEEEeCCH
Confidence 34456777775543222222111111 1233444433346788888887777777777777665 35667777644
No 384
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=44.45 E-value=1.3e+02 Score=25.36 Aligned_cols=33 Identities=12% Similarity=0.147 Sum_probs=26.4
Q ss_pred CCCCCeEEEeCCCC-ChHHHHHHHHHCCCcEEEe
Q 026235 47 SNSNPKVVVTRERG-KNGKLIKALAKHRIDCLEL 79 (241)
Q Consensus 47 ~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~ 79 (241)
.+.++++|||.... -...+++.|.+.|+++...
T Consensus 6 ~l~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~ 39 (266)
T PRK06171 6 NLQGKIIIVTGGSSGIGLAIVKELLANGANVVNA 39 (266)
T ss_pred cCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEE
Confidence 46789999998764 3677899999999988754
No 385
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=44.40 E-value=2.1e+02 Score=24.80 Aligned_cols=133 Identities=14% Similarity=0.069 Sum_probs=0.0
Q ss_pred HHHHHHhcCCCccEEEE-eCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHHHH--HHhhhccCCCCceeecCCCCCHHHHH
Q 026235 92 RLSSVLNADTIFDWIII-TSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF--EEVIQSSKCSLDVAFSPSKATGKILA 168 (241)
Q Consensus 92 ~l~~~l~~l~~~d~IiF-TS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~L--~~~~~~~~~Gi~~~~~p~~~t~e~L~ 168 (241)
...+.+..-...|.||. .+..........+.+ .+++++..+..+...- ..- .+-............++
T Consensus 58 ~~~~~l~~~~~v~avig~~~s~~~~~~~~~~~~---~~iP~i~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 128 (336)
T cd06326 58 ANTRKLIEDDKVFALFGYVGTPTTAAALPLLEE---AGVPLVGPFTGASSLRDPPDR------NVFNVRASYADEIAAIV 128 (336)
T ss_pred HHHHHHHhhcCcEEEEeCCCchhHHHHHHHHHH---cCCeEEEecCCcHHhcCCCCC------ceEEeCCChHHHHHHHH
Q ss_pred HHhhhCCCCccEEEEE-----ccCCCchhHHHHHHhCCCeeeEeeeeeeecCCCChHHHHHHc-CCCCEEEEEC
Q 026235 169 SELPKNGKKKCTVLYP-----ASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA-LSIPVVAVAS 236 (241)
Q Consensus 169 ~~l~~~~~~~~~iL~~-----~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~l-~~id~IvFtS 236 (241)
+.+.+... +++.++ .+......+.+.+++.|.++.....|... ..+....+.+.. ..+|+|++++
T Consensus 129 ~~l~~~g~--~~v~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~-~~d~~~~~~~l~~~~~dav~~~~ 199 (336)
T cd06326 129 RHLVTLGL--KRIAVFYQDDAFGKDGLAGVEKALAARGLKPVATASYERN-TADVAAAVAQLAAARPQAVIMVG 199 (336)
T ss_pred HHHHHhCC--ceEEEEEecCcchHHHHHHHHHHHHHcCCCeEEEEeecCC-cccHHHHHHHHHhcCCCEEEEEc
No 386
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=44.31 E-value=2.1e+02 Score=24.79 Aligned_cols=126 Identities=13% Similarity=0.024 Sum_probs=63.6
Q ss_pred CCccEEEEeCHH-HHHHHHHHHHhcCCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCC-CCCHHHHHHHhhhCCCCc
Q 026235 101 TIFDWIIITSPE-AGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKK 178 (241)
Q Consensus 101 ~~~d~IiFTS~~-aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~-~~t~e~L~~~l~~~~~~~ 178 (241)
...+.||-...+ .+......+.+ .+++++..+.. ...+... ....+-+. +.+. ......+++.+.+.. .
T Consensus 64 ~~v~~iig~~~s~~~~~~~~~~~~---~~ip~v~~~~~-~~~~~~~-~~~~~~f~--~~~~~~~~~~~~~~~l~~~~--~ 134 (336)
T cd06360 64 DKVDVVVGPVHSGEALAMVKVLRE---PGTPLINPNAG-ADDLTGR-LCAPNFFR--TSFSNAQWAAPMGKYAADDG--Y 134 (336)
T ss_pred hCCcEEEccCccHhHHHHHHHHHh---cCceEEecCCC-Ccccccc-CCCCcEEE--EeCchHHHHHHHHHHHHHcC--C
Confidence 467786644322 22333444443 34666666543 3333222 00000111 2222 233556777776554 3
Q ss_pred cEEEEEccCCC-----chhHHHHHHhCCCeeeEeeeeeeecCCCChHHHHHHc-CCCCEEEEEC
Q 026235 179 CTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA-LSIPVVAVAS 236 (241)
Q Consensus 179 ~~iL~~~g~~~-----~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~l-~~id~IvFtS 236 (241)
+++.++..+.. ...+.+.|++.|.++.....|... ..+....+.+.. .++|+|++..
T Consensus 135 ~~v~~l~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~-~~d~~~~v~~~~~~~pd~v~~~~ 197 (336)
T cd06360 135 KKVVTVAWDYAFGYEVVEGFKEAFTEAGGKIVKELWVPFG-TSDFASYLAQIPDDVPDAVFVFF 197 (336)
T ss_pred CeEEEEeccchhhHHHHHHHHHHHHHcCCEEEEEEecCCC-CcchHHHHHHHHhcCCCEEEEec
Confidence 67777755432 245778899999988766555432 223233332222 5789988754
No 387
>PRK12829 short chain dehydrogenase; Provisional
Probab=44.31 E-value=1.3e+02 Score=25.03 Aligned_cols=33 Identities=15% Similarity=0.090 Sum_probs=25.3
Q ss_pred CCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEe
Q 026235 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (241)
Q Consensus 47 ~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (241)
.+.++++|||..... ...+.+.|.++|++|..+
T Consensus 8 ~~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~ 41 (264)
T PRK12829 8 PLDGLRVLVTGGASGIGRAIAEAFAEAGARVHVC 41 (264)
T ss_pred ccCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEE
Confidence 367899999988653 677888888899886543
No 388
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=44.28 E-value=26 Score=28.71 Aligned_cols=72 Identities=17% Similarity=0.183 Sum_probs=41.5
Q ss_pred CHHHHHHHhhh---CCCCccEEEEEccCCCchhHHHHHHhCCCeeeEeeeeeeecCCCChH--------HHHHHcCCCCE
Q 026235 163 TGKILASELPK---NGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQ--------TVLKQALSIPV 231 (241)
Q Consensus 163 t~e~L~~~l~~---~~~~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~--------~~~~~l~~id~ 231 (241)
+.+++++.|.+ ....|++++++-...-..-+...|+..|++| .||++.|...... .+.+.+...|.
T Consensus 5 ~g~S~~d~i~r~t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V---~V~e~DPi~alqA~~dGf~v~~~~~a~~~adi 81 (162)
T PF00670_consen 5 TGQSLVDGIMRATNLMLAGKRVVVIGYGKVGKGIARALRGLGARV---TVTEIDPIRALQAAMDGFEVMTLEEALRDADI 81 (162)
T ss_dssp HHHHHHHHHHHHH-S--TTSEEEEE--SHHHHHHHHHHHHTT-EE---EEE-SSHHHHHHHHHTT-EEE-HHHHTTT-SE
T ss_pred cchhHHHHHHhcCceeeCCCEEEEeCCCcccHHHHHHHhhCCCEE---EEEECChHHHHHhhhcCcEecCHHHHHhhCCE
Confidence 35677777753 2346789999888777788999999999765 6777766442111 11222467787
Q ss_pred EEEECC
Q 026235 232 VAVASP 237 (241)
Q Consensus 232 IvFtSp 237 (241)
++-++.
T Consensus 82 ~vtaTG 87 (162)
T PF00670_consen 82 FVTATG 87 (162)
T ss_dssp EEE-SS
T ss_pred EEECCC
Confidence 665544
No 389
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]
Probab=44.19 E-value=1.8e+02 Score=26.72 Aligned_cols=97 Identities=11% Similarity=0.114 Sum_probs=55.4
Q ss_pred eCHHHHHHHHHhhhccCCCCceeecCC--CCCHHHHHHHhhhCCCCccEEEEEccCCCchh-HHHHHHhCCCeeeEeeee
Q 026235 134 VGAGTASIFEEVIQSSKCSLDVAFSPS--KATGKILASELPKNGKKKCTVLYPASAKASNE-IEEGLSNRGFEVVRLNTY 210 (241)
Q Consensus 134 IG~~Ta~~L~~~~~~~~~Gi~~~~~p~--~~t~e~L~~~l~~~~~~~~~iL~~~g~~~~~~-L~~~L~~~G~~V~~~~vY 210 (241)
||..|+-+|.+. |..+..+-. .+..++|- .+.+....+++|.+..++..... |.+-.+..+ ++.+...
T Consensus 14 iGsht~l~L~~~------gy~v~~vDNl~n~~~~sl~-r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~~~--fd~V~Hf 84 (343)
T KOG1371|consen 14 IGSHTVLALLKR------GYGVVIVDNLNNSYLESLK-RVRQLLGEGKSVFFVEGDLNDAEALEKLFSEVK--FDAVMHF 84 (343)
T ss_pred eehHHHHHHHhC------CCcEEEEecccccchhHHH-HHHHhcCCCCceEEEEeccCCHHHHHHHHhhcC--CceEEee
Confidence 899999999999 998865531 23333332 33333334578999999887654 555555443 4444332
Q ss_pred ----------------eeecCCCChHHHHHHc--CCCCEEEEECCccC
Q 026235 211 ----------------TTEPVHHVDQTVLKQA--LSIPVVAVASPSAV 240 (241)
Q Consensus 211 ----------------~~~~~~~~~~~~~~~l--~~id~IvFtSps~v 240 (241)
......-.-. +++.. .+.-.++|.|+++|
T Consensus 85 a~~~~vgeS~~~p~~Y~~nNi~gtln-lLe~~~~~~~~~~V~sssatv 131 (343)
T KOG1371|consen 85 AALAAVGESMENPLSYYHNNIAGTLN-LLEVMKAHNVKALVFSSSATV 131 (343)
T ss_pred hhhhccchhhhCchhheehhhhhHHH-HHHHHHHcCCceEEEecceee
Confidence 2222111111 12221 24888999998876
No 390
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=44.09 E-value=55 Score=30.01 Aligned_cols=61 Identities=10% Similarity=0.073 Sum_probs=39.0
Q ss_pred CCCCCCeEEEeCCCCChHHHHHHHHHCCCcEEEe--ceEEEeeCCCchHH-HHHHhcCCCccEEEEe
Q 026235 46 ASNSNPKVVVTRERGKNGKLIKALAKHRIDCLEL--PLIQHAQGPDTDRL-SSVLNADTIFDWIIIT 109 (241)
Q Consensus 46 ~~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~--P~~~~~~~~~~~~l-~~~l~~l~~~d~IiFT 109 (241)
..+.|++||+.....-+....+.|.++|+.-+.+ -.++..+ .+.+ .+.+.-...+|+||+.
T Consensus 170 ~~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~~---~~~~~~~~~~~~~~~DvVIs~ 233 (338)
T PRK00676 170 QKSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTLP---YRTVVREELSFQDPYDVIFFG 233 (338)
T ss_pred CCccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccccc---hhhhhhhhhhcccCCCEEEEc
Confidence 3578999999999888889999999999753222 1111111 1111 1233334789999984
No 391
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=44.08 E-value=1.4e+02 Score=23.61 Aligned_cols=69 Identities=23% Similarity=0.190 Sum_probs=45.1
Q ss_pred CCHHHHHHHhhhCC--CCccEEEEE-ccCCCchhHHHHHHhCCCeeeEeeeeeeecCCCChHHHHHHcCCCCEEEEECCc
Q 026235 162 ATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPS 238 (241)
Q Consensus 162 ~t~e~L~~~l~~~~--~~~~~iL~~-~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~l~~id~IvFtSps 238 (241)
-+.+++++.+..+. ..|++++++ |+.....-|...|.++|++|.-+.-... ++.+.+.+.|+|+-..++
T Consensus 10 ~t~~a~~~ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~--------~l~~~v~~ADIVvsAtg~ 81 (140)
T cd05212 10 PVAKAVKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTI--------QLQSKVHDADVVVVGSPK 81 (140)
T ss_pred cHHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCc--------CHHHHHhhCCEEEEecCC
Confidence 47888888887652 457777665 4444556799999999998877753321 122234677887766543
No 392
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=44.05 E-value=72 Score=27.45 Aligned_cols=150 Identities=18% Similarity=0.244 Sum_probs=83.4
Q ss_pred hHHHHHHHHHCCCcEEE--eceEEEeeCCCchHHH-----HHHh-cCCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEE
Q 026235 62 NGKLIKALAKHRIDCLE--LPLIQHAQGPDTDRLS-----SVLN-ADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGV 133 (241)
Q Consensus 62 ~~~l~~~L~~~G~~v~~--~P~~~~~~~~~~~~l~-----~~l~-~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~a 133 (241)
..++...+.+.|+.++. +|+=.+.+ ++...++ .++. .....|.|.|...+| .+.
T Consensus 20 E~ef~~m~~~ervs~H~sRmpl~~VT~-EeL~~M~~~t~~aAl~Lada~vdvI~Y~Ctsg-----------------S~i 81 (238)
T COG3473 20 EPEFWRMLPSERVSVHTSRMPLKNVTP-EELLKMESYTERAALELADAGVDVIVYGCTSG-----------------SLI 81 (238)
T ss_pred chHHHHhhhhccceeeecccccccCCH-HHHHHHHHHHHHHHHhcCccccCEEEEeccce-----------------eee
Confidence 45677777766666554 56555332 1111111 0110 114556666654433 355
Q ss_pred eCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEccCCCchhHHHHHHhCCCeeeEeeeeeee
Q 026235 134 VGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTE 213 (241)
Q Consensus 134 IG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~~~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~ 213 (241)
+|++=-+.+.+.+|..+ |+.+ + .++-.+++.|.......-.+|-|--+.-+.-..++|+++|++|....+-.-.
T Consensus 82 ~G~~~d~ei~~~ie~~~-~v~v-v----Tts~Avv~aL~al~a~ri~vlTPY~~evn~~e~ef~~~~Gfeiv~~~~Lgi~ 155 (238)
T COG3473 82 GGPGYDKEIAQRIEEAK-GVPV-V----TTSTAVVEALNALGAQRISVLTPYIDEVNQREIEFLEANGFEIVDFKGLGIT 155 (238)
T ss_pred cCCchhHHHHHHHHhcc-CCce-e----echHHHHHHHHhhCcceEEEeccchhhhhhHHHHHHHhCCeEEEEeeccCCc
Confidence 67555555555555555 6654 2 3567788888877543223444445667777899999999999888776443
Q ss_pred cCCC----ChH---HHHHHc--CCCCEEEEE
Q 026235 214 PVHH----VDQ---TVLKQA--LSIPVVAVA 235 (241)
Q Consensus 214 ~~~~----~~~---~~~~~l--~~id~IvFt 235 (241)
.+-. .+. ++.+.+ ++.|+|...
T Consensus 156 dn~eigr~~P~~~y~lAk~~~~~~~DaiFiS 186 (238)
T COG3473 156 DNLEIGRQEPWAVYRLAKEVFTPDADAIFIS 186 (238)
T ss_pred ccchhcccChHHHHHHHHHhcCCCCCeEEEE
Confidence 3221 111 233333 678887654
No 393
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=44.01 E-value=57 Score=29.94 Aligned_cols=41 Identities=24% Similarity=0.217 Sum_probs=27.4
Q ss_pred CHHHHHHHhhhCCCCccEEEEEccCCC--chhHHHHHHhCCCeeeE
Q 026235 163 TGKILASELPKNGKKKCTVLYPASAKA--SNEIEEGLSNRGFEVVR 206 (241)
Q Consensus 163 t~e~L~~~l~~~~~~~~~iL~~~g~~~--~~~L~~~L~~~G~~V~~ 206 (241)
..+.+-+.+.+. ++|+|++.+... .+.+.+.|++.|+++..
T Consensus 10 ~~~~l~~~l~~~---~~r~livtd~~~~~~~~v~~~L~~~g~~~~~ 52 (374)
T cd08183 10 VAKELPALAAEL---GRRVLLVTGASSLRAAWLIEALRAAGIEVTH 52 (374)
T ss_pred HHHHHHHHHHHc---CCcEEEEECCchHHHHHHHHHHHHcCCeEEE
Confidence 345566666554 479999987654 35577789888877643
No 394
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=43.97 E-value=1.7e+02 Score=26.05 Aligned_cols=138 Identities=13% Similarity=0.045 Sum_probs=76.1
Q ss_pred EEEeCCCCChHHH----HHHHHHCCCcEEEeceEEEeeCCCchHHHHHHh---cCCCccEEEEeCH--HHH--HHHHHHH
Q 026235 53 VVVTRERGKNGKL----IKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN---ADTIFDWIIITSP--EAG--SVFLEAW 121 (241)
Q Consensus 53 VLitR~~~~~~~l----~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~---~l~~~d~IiFTS~--~aV--~~f~~~l 121 (241)
+++....+.+..+ .+.+++.|+++..+-+-+. ...+++.+.+. .....|.|+.--| ... +..++.+
T Consensus 35 ii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~---~~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I 111 (282)
T PRK14169 35 VVLVGSDPASEVYVRNKQRRAEDIGVRSLMFRLPEA---TTQADLLAKVAELNHDPDVDAILVQLPLPAGLDEQAVIDAI 111 (282)
T ss_pred EEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCC---CCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhhc
Confidence 4555554444333 3456777988776544222 11234444443 4467899999877 222 1223322
Q ss_pred Hh-cCCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCC--CCccEEEEE-ccCCCchhHHHHH
Q 026235 122 KE-AGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEEGL 197 (241)
Q Consensus 122 ~~-~~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~--~~~~~iL~~-~g~~~~~~L~~~L 197 (241)
.. ...++..-.-.|.-. . |-. .+.| -|+.+.++.|..+. ..|++++++ ||.....-|...|
T Consensus 112 ~p~KDVDGl~~~N~g~l~------~------~~~-~~~P--cTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL 176 (282)
T PRK14169 112 DPDKDVDGFSPVSVGRLW------A------NEP-TVVA--STPYGIMALLDAYDIDVAGKRVVIVGRSNIVGRPLAGLM 176 (282)
T ss_pred CcccCcccCChhhhHHHh------c------CCC-CCCC--CCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHH
Confidence 21 112344433333321 1 211 1344 58899998887653 457776655 5555556688899
Q ss_pred HhCCCeeeEee
Q 026235 198 SNRGFEVVRLN 208 (241)
Q Consensus 198 ~~~G~~V~~~~ 208 (241)
.++|++|.-+.
T Consensus 177 ~~~~atVtich 187 (282)
T PRK14169 177 VNHDATVTIAH 187 (282)
T ss_pred HHCCCEEEEEC
Confidence 99999887553
No 395
>PRK09072 short chain dehydrogenase; Provisional
Probab=43.82 E-value=1.6e+02 Score=24.83 Aligned_cols=85 Identities=24% Similarity=0.277 Sum_probs=45.1
Q ss_pred CCCCCeEEEeCCCC-ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEE--EEeCHHHHHHHHHHHHh
Q 026235 47 SNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWI--IITSPEAGSVFLEAWKE 123 (241)
Q Consensus 47 ~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~I--iFTS~~aV~~f~~~l~~ 123 (241)
.+.+++||||.... -+..+.+.|.++|++|..+- + .....+.+...+..-....++ =++....++.+++.+.+
T Consensus 2 ~~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~--r--~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~ 77 (263)
T PRK09072 2 DLKDKRVLLTGASGGIGQALAEALAAAGARLLLVG--R--NAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARARE 77 (263)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEE--C--CHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHh
Confidence 35688999998654 46788888999998766442 1 000111122222111122222 14667777777776654
Q ss_pred cCCCCcEEEEeC
Q 026235 124 AGTPNVRIGVVG 135 (241)
Q Consensus 124 ~~~~~~~i~aIG 135 (241)
.+..+.-+.+.|
T Consensus 78 ~~~id~lv~~ag 89 (263)
T PRK09072 78 MGGINVLINNAG 89 (263)
T ss_pred cCCCCEEEECCC
Confidence 332244444444
No 396
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=43.62 E-value=1.6e+02 Score=26.41 Aligned_cols=140 Identities=19% Similarity=0.159 Sum_probs=78.1
Q ss_pred EEEeCCCCChHHHH----HHHHHCCCcEEEeceEEEeeCCCchHHHHHHh---cCCCccEEEEeCHHH--H--HHHHHHH
Q 026235 53 VVVTRERGKNGKLI----KALAKHRIDCLELPLIQHAQGPDTDRLSSVLN---ADTIFDWIIITSPEA--G--SVFLEAW 121 (241)
Q Consensus 53 VLitR~~~~~~~l~----~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~---~l~~~d~IiFTS~~a--V--~~f~~~l 121 (241)
+++....+.+..+. +.+++.|+.....-+-+.. ..+++...+. ...++|.|++.=|=- + +..++.+
T Consensus 35 vilvgddpaS~~YV~~K~k~~~~iGi~~~~~~l~~~~---t~~eLl~~I~~lN~D~~v~GIlVQlPLp~hld~~~il~~I 111 (283)
T COG0190 35 VILVGDDPASQVYVRSKKKAAEEIGIASELYDLPEDI---TEEELLALIDELNADPEVDGILVQLPLPKHLDEQKLLQAI 111 (283)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHcCCeeEEEeCCCcC---CHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhhc
Confidence 45555554444433 4567789877765554332 2344444554 347889998764421 1 1222222
Q ss_pred H-hcCCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCCC--CccEE-EEEccCCCchhHHHHH
Q 026235 122 K-EAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGK--KKCTV-LYPASAKASNEIEEGL 197 (241)
Q Consensus 122 ~-~~~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~~--~~~~i-L~~~g~~~~~~L~~~L 197 (241)
. +...++..-+=+|.-... +- + +.| -|..+.+..|..+.. .|+++ ++-||+....-|...|
T Consensus 112 ~p~KDVDG~hp~N~g~L~~~---~~------~----~~P--CTp~gi~~ll~~~~i~l~Gk~~vVVGrS~iVGkPla~lL 176 (283)
T COG0190 112 DPEKDVDGFHPYNLGKLAQG---EP------G----FLP--CTPAGIMTLLEEYGIDLRGKNVVVVGRSNIVGKPLALLL 176 (283)
T ss_pred CcCCCccccChhHhcchhcC---CC------C----CCC--CCHHHHHHHHHHhCCCCCCCEEEEECCCCcCcHHHHHHH
Confidence 1 112244444444433221 11 2 233 588999988877642 56775 4556666667788899
Q ss_pred HhCCCeeeEeeee
Q 026235 198 SNRGFEVVRLNTY 210 (241)
Q Consensus 198 ~~~G~~V~~~~vY 210 (241)
.+.|++|+-|.-.
T Consensus 177 ~~~naTVtvcHs~ 189 (283)
T COG0190 177 LNANATVTVCHSR 189 (283)
T ss_pred HhCCCEEEEEcCC
Confidence 9999999766544
No 397
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=43.56 E-value=1.9e+02 Score=24.10 Aligned_cols=116 Identities=15% Similarity=0.125 Sum_probs=60.4
Q ss_pred HHHHHHHHH-CCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHHH
Q 026235 63 GKLIKALAK-HRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (241)
Q Consensus 63 ~~l~~~L~~-~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~ 141 (241)
..+.+.+++ .|+.+...... +.+.+ +.+ .-..+|+||+++.+. .....+.+ .+++++.+|....
T Consensus 18 ~gi~~~~~~~~g~~~~~~~~~------~~~~~-~~l-~~~~vdGiI~~~~~~--~~~~~l~~---~~~PvV~~~~~~~-- 82 (265)
T cd01543 18 RGIARYAREHGPWSIYLEPRG------LQEPL-RWL-KDWQGDGIIARIDDP--EMAEALQK---LGIPVVDVSGSRE-- 82 (265)
T ss_pred HHHHHHHHhcCCeEEEEeccc------chhhh-hhc-cccccceEEEECCCH--HHHHHHhh---CCCCEEEEeCccC--
Confidence 345566777 67776553211 11112 223 225799999875321 12233332 3578999986431
Q ss_pred HHHhhhccCCCCceeecCCC-CCHHHHHHHhhhCCCCccEEEEEccCCCc------hhHHHHHHhCCCee
Q 026235 142 FEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS------NEIEEGLSNRGFEV 204 (241)
Q Consensus 142 L~~~~~~~~~Gi~~~~~p~~-~t~e~L~~~l~~~~~~~~~iL~~~g~~~~------~~L~~~L~~~G~~V 204 (241)
.. ++.. +..+. ..+..+++.+.+.. .++++++.+.... .-+.+.|++.|..+
T Consensus 83 --~~------~~~~-v~~d~~~~g~~~~~~l~~~g--~~~i~~i~~~~~~~~~~R~~gf~~~~~~~~~~~ 141 (265)
T cd01543 83 --KP------GIPR-VTTDNAAIGRMAAEHFLERG--FRHFAFYGLPGARWSDEREEAFRQLVAEAGYEC 141 (265)
T ss_pred --CC------CCCE-EeeCHHHHHHHHHHHHHHCC--CcEEEEEcCCCCHHHHHHHHHHHHHHHHcCCcc
Confidence 12 3322 22332 23445556665543 4688888654332 23566778888765
No 398
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=43.54 E-value=76 Score=29.11 Aligned_cols=59 Identities=19% Similarity=0.269 Sum_probs=35.9
Q ss_pred CCccEEEEEccCCCchhHHHHHHhCCCeeeEeeeeeeecCCCChHHH----HHHcCCCCEEEEEC
Q 026235 176 KKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTV----LKQALSIPVVAVAS 236 (241)
Q Consensus 176 ~~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~----~~~l~~id~IvFtS 236 (241)
..++++|++...+-.....+.|.++|+. .+.+..+........+. .+.+.++|+|+..|
T Consensus 172 l~~k~vLvIGaGem~~l~a~~L~~~g~~--~i~v~nRt~~~~~~~~~~~~~~~~~~~~DvVIs~t 234 (338)
T PRK00676 172 SKKASLLFIGYSEINRKVAYYLQRQGYS--RITFCSRQQLTLPYRTVVREELSFQDPYDVIFFGS 234 (338)
T ss_pred ccCCEEEEEcccHHHHHHHHHHHHcCCC--EEEEEcCCccccchhhhhhhhhhcccCCCEEEEcC
Confidence 3578999997766667788899998863 34444333221111111 12236899999853
No 399
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=43.49 E-value=1.9e+02 Score=25.94 Aligned_cols=160 Identities=18% Similarity=0.079 Sum_probs=85.5
Q ss_pred CeEEEeCCCCChHH----HHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHh---cCCCccEEEEeCH--HHHH--HHHH
Q 026235 51 PKVVVTRERGKNGK----LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN---ADTIFDWIIITSP--EAGS--VFLE 119 (241)
Q Consensus 51 ~~VLitR~~~~~~~----l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~---~l~~~d~IiFTS~--~aV~--~f~~ 119 (241)
.-+++......+.. -.+.+++.|+++..+-+-+.. ..+++.+.+. .....|.|+.--| ..++ .+++
T Consensus 32 Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~---~~~el~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~ 108 (287)
T PRK14173 32 LRVVRLGEDPASVSYVRLKDRQAKALGLRSQVEVLPEST---SQEELLELIARLNADPEVDGILVQLPLPPHIDFQRVLE 108 (287)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHh
Confidence 33555554444333 344677789887765443221 1234444443 4467899999877 2221 2222
Q ss_pred HHHh-cCCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCC--CCccEEEEE-ccCCCchhHHH
Q 026235 120 AWKE-AGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEE 195 (241)
Q Consensus 120 ~l~~-~~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~--~~~~~iL~~-~g~~~~~~L~~ 195 (241)
.+.. ...++..-+-.|.- - . |-. .+.| -|+.+.++.|..+. ..|++++++ ||.....-|..
T Consensus 109 ~I~p~KDVDGl~~~N~g~l-----~-~------~~~-~~~P--cTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~ 173 (287)
T PRK14173 109 AIDPLKDVDGFHPLNVGRL-----W-M------GGE-ALEP--CTPAGVVRLLKHYGIPLAGKEVVVVGRSNIVGKPLAA 173 (287)
T ss_pred ccCccccccccChhhhHHH-----h-c------CCC-CCCC--CCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHH
Confidence 2211 11234433333322 1 2 322 2444 48999998887653 357776655 45555566888
Q ss_pred HHHhCCCeeeEeeeeeeecCCCChHHHHHHcCCCCEEEEEC
Q 026235 196 GLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVAS 236 (241)
Q Consensus 196 ~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~l~~id~IvFtS 236 (241)
.|.++|++|+-+.-.. ..+.+...+.|+|+-.-
T Consensus 174 lL~~~~aTVtichs~T--------~~l~~~~~~ADIvIsAv 206 (287)
T PRK14173 174 LLLREDATVTLAHSKT--------QDLPAVTRRADVLVVAV 206 (287)
T ss_pred HHHHCCCEEEEeCCCC--------CCHHHHHhhCCEEEEec
Confidence 9989999887553221 11222235677776543
No 400
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=43.43 E-value=59 Score=24.68 Aligned_cols=42 Identities=7% Similarity=0.106 Sum_probs=26.1
Q ss_pred HHHHHH-CCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCH
Q 026235 66 IKALAK-HRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP 111 (241)
Q Consensus 66 ~~~L~~-~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~ 111 (241)
.+.|++ .|+.+..+ ++-+....+.+.+.+ .-+++|+||+|+.
T Consensus 37 a~~L~~~~Gi~v~~v---k~~~~~g~~~i~~~i-~~g~i~~VInt~~ 79 (115)
T cd01422 37 GLLIQEATGLTVNRM---KSGPLGGDQQIGALI-AEGEIDAVIFFRD 79 (115)
T ss_pred HHHHHHhhCCcEEEE---ecCCCCchhHHHHHH-HcCceeEEEEcCC
Confidence 455666 77776654 321112234566667 4589999999965
No 401
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=43.14 E-value=70 Score=29.22 Aligned_cols=66 Identities=17% Similarity=0.110 Sum_probs=37.8
Q ss_pred CHHHHHHHhhhCCCCccEEEEEccCC-----CchhHHHHHHhCCCeeeEeeeeeeecCCCChHHH---HHHc--CCCCEE
Q 026235 163 TGKILASELPKNGKKKCTVLYPASAK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTV---LKQA--LSIPVV 232 (241)
Q Consensus 163 t~e~L~~~l~~~~~~~~~iL~~~g~~-----~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~---~~~l--~~id~I 232 (241)
..+.+.+.+.+.. .++++++.+.. ..+.+.+.|++.|+++. +|.........+.+ .+.. .++|+|
T Consensus 11 ~~~~l~~~l~~~g--~~~~liv~~~~~~~~~~~~~v~~~L~~~g~~~~---~~~~v~~~p~~~~v~~~~~~~~~~~~d~I 85 (370)
T cd08192 11 AIKELPAECAELG--IKRPLIVTDPGLAALGLVARVLALLEDAGLAAA---LFDEVPPNPTEAAVEAGLAAYRAGGCDGV 85 (370)
T ss_pred HHHHHHHHHHHcC--CCeEEEEcCcchhhCccHHHHHHHHHHcCCeEE---EeCCCCCCCCHHHHHHHHHHHHhcCCCEE
Confidence 3455666665542 26888888753 23568888988887654 34333333223322 2222 578888
Q ss_pred E
Q 026235 233 A 233 (241)
Q Consensus 233 v 233 (241)
+
T Consensus 86 I 86 (370)
T cd08192 86 I 86 (370)
T ss_pred E
Confidence 7
No 402
>PF09084 NMT1: NMT1/THI5 like; InterPro: IPR015168 This entry is found in the NMT1 and THI5 proteins. These proteins are proposed to be required for the biosynthesis of the pyrimidine moiety of thiamine [, , ]. They are regulated by thiamine []. ; PDB: 2X26_A 3E4R_A 3KSJ_A 3KSX_A 3UIF_A 4DDD_A 1US4_A 1US5_A 3IX1_B 2X7P_A ....
Probab=43.11 E-value=17 Score=29.79 Aligned_cols=61 Identities=21% Similarity=0.163 Sum_probs=39.3
Q ss_pred cccCCCCCCCeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEE
Q 026235 42 TSASASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII 107 (241)
Q Consensus 42 ~~~~~~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~Ii 107 (241)
-..-.+|+||+|.+++.......+...|+++|+....+..+ ... ...+...+ .-+..|+++
T Consensus 85 i~~~~DLkGK~i~v~~~s~~~~~~~~~l~~~g~~~~~v~~v---~~~-~~~~~~al-~~g~vDa~~ 145 (216)
T PF09084_consen 85 IKSPADLKGKKIGVSRGSSSEYFLRALLKKNGIDPDDVKIV---NLG-PPELAQAL-LSGQVDAAI 145 (216)
T ss_dssp -SSGGGGTTSEEEESTTSHHHHHHHHHHHHTTT-GGGSEEE---ES--HHHHHHHH-HTTSSSEEE
T ss_pred CCCHHHhCCCEEEEecCcchhHHHHHHHHHhccccccceee---eee-hhhhhhhh-hcCCCCEEE
Confidence 34556789999999996556667888999999865544333 222 23333355 347889888
No 403
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=43.05 E-value=2.5e+02 Score=25.29 Aligned_cols=137 Identities=17% Similarity=0.130 Sum_probs=75.8
Q ss_pred EEEeCCCCChHHH----HHHHHHCCCcEEEeceEEEeeCCCchHHHHHH---hcCCCccEEEEeCH--HHHH--HHHHHH
Q 026235 53 VVVTRERGKNGKL----IKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NADTIFDWIIITSP--EAGS--VFLEAW 121 (241)
Q Consensus 53 VLitR~~~~~~~l----~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l---~~l~~~d~IiFTS~--~aV~--~f~~~l 121 (241)
+++....+....+ .+.+++.|++....-+-+. ...+++.+.+ ++....|.|++--| ..++ ..++.+
T Consensus 38 iI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~---~t~~~l~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I 114 (301)
T PRK14194 38 VILVGNDPASQVYVRNKILRAEEAGIRSLEHRLPAD---TSQARLLALIAELNADPSVNGILLQLPLPAHIDEARVLQAI 114 (301)
T ss_pred EEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCC---CCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhcc
Confidence 5555555444333 3466778988765544221 1233444444 34468899998877 2222 122222
Q ss_pred Hh-cCCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhC--CCCccEEEEEccC-CCchhHHHHH
Q 026235 122 KE-AGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN--GKKKCTVLYPASA-KASNEIEEGL 197 (241)
Q Consensus 122 ~~-~~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~--~~~~~~iL~~~g~-~~~~~L~~~L 197 (241)
.. ...++..-.-.|.- - . |-. .+.| -|+.+.++.|..+ ...|+++.++--. .-..-|...|
T Consensus 115 ~p~KDVDGl~~~N~g~l-----~-~------~~~-~~~P--cTp~aii~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L 179 (301)
T PRK14194 115 NPLKDVDGFHSENVGGL-----S-Q------GRD-VLTP--CTPSGCLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAALL 179 (301)
T ss_pred CchhccCccChhhhhHH-----h-c------CCC-CCCC--CcHHHHHHHHHHhCCCCCCCEEEEECCCCccHHHHHHHH
Confidence 11 11244444444432 1 2 322 2444 4889999888765 3468888887443 4445688889
Q ss_pred HhCCCeeeEe
Q 026235 198 SNRGFEVVRL 207 (241)
Q Consensus 198 ~~~G~~V~~~ 207 (241)
.++|++|.-+
T Consensus 180 ~~~gatVtv~ 189 (301)
T PRK14194 180 LQAHCSVTVV 189 (301)
T ss_pred HHCCCEEEEE
Confidence 8999877655
No 404
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.99 E-value=2.5e+02 Score=25.23 Aligned_cols=160 Identities=10% Similarity=0.053 Sum_probs=84.1
Q ss_pred EEEeCCCCChHHH----HHHHHHCCCcEEEeceEEEeeCCCchHHHHHH---hcCCCccEEEEeCH--HHHH--HHHHHH
Q 026235 53 VVVTRERGKNGKL----IKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NADTIFDWIIITSP--EAGS--VFLEAW 121 (241)
Q Consensus 53 VLitR~~~~~~~l----~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l---~~l~~~d~IiFTS~--~aV~--~f~~~l 121 (241)
+++....+....+ .+.+++.|+++..+-+-+. ...+++.+.+ ++....|.|+.--| ..++ ..++.+
T Consensus 37 iI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~---~~e~~l~~~I~~lN~d~~V~GIlvqlPLP~~i~~~~i~~~I 113 (294)
T PRK14187 37 VILVGDDPASQLYVRNKQRKAEMLGLRSETILLPST---ISESSLIEKINELNNDDSVHGILVQLPVPNHIDKNLIINTI 113 (294)
T ss_pred EEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCC---CCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcc
Confidence 5555555444433 4467778988776544221 1223444444 34467899998877 2222 112221
Q ss_pred HhcCCCCcEEEEeCHHHHHHHHHhhhccCCCCc-eeecCCCCCHHHHHHHhhhCC--CCccEEEEE-ccCCCchhHHHHH
Q 026235 122 KEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLD-VAFSPSKATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEEGL 197 (241)
Q Consensus 122 ~~~~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~-~~~~p~~~t~e~L~~~l~~~~--~~~~~iL~~-~g~~~~~~L~~~L 197 (241)
. +.+-+=++.+.-...|- . |-. ..+.| -|+.+.++.|..+. ..|++++++ ||.....-|...|
T Consensus 114 ~----p~KDVDGl~~~n~g~l~-~------g~~~~~~~P--cTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL 180 (294)
T PRK14187 114 D----PEKDVDGFHNENVGRLF-T------GQKKNCLIP--CTPKGCLYLIKTITRNLSGSDAVVIGRSNIVGKPMACLL 180 (294)
T ss_pred C----cccCcccCChhhHHHHh-C------CCCCCCccC--cCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHH
Confidence 1 11222222232222221 1 321 22444 48899998887652 456776555 4555556688999
Q ss_pred HhCCCeeeEeeeeeeecCCCChHHHHHHcCCCCEEEEEC
Q 026235 198 SNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVAS 236 (241)
Q Consensus 198 ~~~G~~V~~~~vY~~~~~~~~~~~~~~~l~~id~IvFtS 236 (241)
.++|++|.-|.-+.. .+.+...+.|+|+-.-
T Consensus 181 ~~~~aTVt~chs~T~--------~l~~~~~~ADIvVsAv 211 (294)
T PRK14187 181 LGENCTVTTVHSATR--------DLADYCSKADILVAAV 211 (294)
T ss_pred hhCCCEEEEeCCCCC--------CHHHHHhhCCEEEEcc
Confidence 999999976654321 1222235677776543
No 405
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=42.95 E-value=76 Score=30.74 Aligned_cols=85 Identities=18% Similarity=0.213 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHH-hhhCCCC-ccEEEEEccCC
Q 026235 111 PEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASE-LPKNGKK-KCTVLYPASAK 188 (241)
Q Consensus 111 ~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~-l~~~~~~-~~~iL~~~g~~ 188 (241)
+.++..|...+.+. +..+++-| .|++.|++. |+.+..+.+-....+|++- .+...++ ..-+|. ..
T Consensus 10 K~~iv~lAk~L~~l---GfeIiATg-GTak~L~e~------GI~v~~Vsk~TgfPEil~GRVKTLHP~IhgGiLa---rr 76 (511)
T TIGR00355 10 KTGIVEFAQGLVER---GVELLSTG-GTAKLLAEA------GVPVTEVSDYTGFPEMMDGRVKTLHPKVHGGILA---RR 76 (511)
T ss_pred cccHHHHHHHHHHC---CCEEEEec-hHHHHHHHC------CCeEEEeecccCCchhhCCccccCCchhhhhhhc---CC
Confidence 55566666666654 57888886 699999999 9988766542222222211 1111110 112232 22
Q ss_pred CchhHHHHHHhCCCeeeEeee
Q 026235 189 ASNEIEEGLSNRGFEVVRLNT 209 (241)
Q Consensus 189 ~~~~L~~~L~~~G~~V~~~~v 209 (241)
..++ .+.|+++|+.-..+.|
T Consensus 77 ~~~~-~~~l~~~~I~~IDlVv 96 (511)
T TIGR00355 77 GDDD-DADLEEHGIEPIDLVV 96 (511)
T ss_pred CchH-HHHHHHcCCCceeEEE
Confidence 3455 7789999985444443
No 406
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=42.93 E-value=1.9e+02 Score=23.91 Aligned_cols=133 Identities=20% Similarity=0.133 Sum_probs=0.0
Q ss_pred hHHHHHHhcCCCccEEEEeC-HHHHHHHHHHHHhcCCCCcEEEEeCHHHHHHHH-HhhhccCCCCceeecCC-CCCHHHH
Q 026235 91 DRLSSVLNADTIFDWIIITS-PEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE-EVIQSSKCSLDVAFSPS-KATGKIL 167 (241)
Q Consensus 91 ~~l~~~l~~l~~~d~IiFTS-~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~L~-~~~~~~~~Gi~~~~~p~-~~t~e~L 167 (241)
+..++.+++ +.|.|+... ...+......+.+ .+++++..+......-. .. ..-..+.+. ....+.+
T Consensus 57 ~~~~~l~~~--~v~~iig~~~~~~~~~~~~~~~~---~~ip~i~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 125 (298)
T cd06268 57 AAARELVDD--GVDAVIGPLSSGVALAAAPVAEE---AGVPLISPGATSPALTGKGN------PYVFRTAPSDAQQAAAL 125 (298)
T ss_pred HHHHHHHhC--CceEEEcCCcchhHHhhHHHHHh---CCCcEEccCCCCcccccCCC------ceEEEcccCcHHHHHHH
Q ss_pred HHHhhhCCCCccEEEEEccCCC-----chhHHHHHHhCCCeeeEeeeeeeecCCCChHHHHHHc-CCCCEEEEEC
Q 026235 168 ASELPKNGKKKCTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA-LSIPVVAVAS 236 (241)
Q Consensus 168 ~~~l~~~~~~~~~iL~~~g~~~-----~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~l-~~id~IvFtS 236 (241)
++.+.+.. ..+++.++.++.. ...+.+.+++.|.++.....|.... .+....+.+.. .++|+|++.+
T Consensus 126 ~~~~~~~~-~~~~i~~v~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~l~~~~~~~vi~~~ 198 (298)
T cd06268 126 ADYLAEKG-KVKKVAIIYDDYAYGRGLAAAFREALKKLGGEVVAEETYPPGA-TDFSPLIAKLKAAGPDAVFLAG 198 (298)
T ss_pred HHHHHHhc-CCCEEEEEEcCCchhHHHHHHHHHHHHHcCCEEEEEeccCCCC-ccHHHHHHHHHhcCCCEEEEcc
No 407
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=42.70 E-value=1.1e+02 Score=25.56 Aligned_cols=69 Identities=19% Similarity=0.219 Sum_probs=44.2
Q ss_pred CCHHHHHHHhhhCCCCccEEEEEccCCCc-----hhHHHHHHhC-CCeeeEeeeeeeecCCCChHHHHHHcCCCCEEEEE
Q 026235 162 ATGKILASELPKNGKKKCTVLYPASAKAS-----NEIEEGLSNR-GFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVA 235 (241)
Q Consensus 162 ~t~e~L~~~l~~~~~~~~~iL~~~g~~~~-----~~L~~~L~~~-G~~V~~~~vY~~~~~~~~~~~~~~~l~~id~IvFt 235 (241)
+..+.|.+.+.+....+.+++|+...... ....+.+++. |+++..+.+.. . ++..+.+...|+|+++
T Consensus 15 ~~~~~l~~~l~~~~~~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~----~---~~~~~~l~~ad~I~l~ 87 (212)
T cd03146 15 HALPAIDDLLLSLTKARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFD----T---EDPLDALLEADVIYVG 87 (212)
T ss_pred cchHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccC----c---ccHHHHHhcCCEEEEC
Confidence 45566666665554445788887665432 2367788888 99888877755 1 1223345688999887
Q ss_pred CC
Q 026235 236 SP 237 (241)
Q Consensus 236 Sp 237 (241)
-.
T Consensus 88 GG 89 (212)
T cd03146 88 GG 89 (212)
T ss_pred Cc
Confidence 54
No 408
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.65 E-value=2.4e+02 Score=25.17 Aligned_cols=140 Identities=15% Similarity=0.104 Sum_probs=77.2
Q ss_pred CeEEEeCCCCChHHH----HHHHHHCCCcEEEeceEEEeeCCCchHHHHHH---hcCCCccEEEEeCH--HHH--HHHHH
Q 026235 51 PKVVVTRERGKNGKL----IKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NADTIFDWIIITSP--EAG--SVFLE 119 (241)
Q Consensus 51 ~~VLitR~~~~~~~l----~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l---~~l~~~d~IiFTS~--~aV--~~f~~ 119 (241)
.-+++....+.+..+ .+.+++.|+++...-+-+.. ..+++.+.+ ++..+.|.|+.--| ..+ +.+++
T Consensus 35 Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~---~~~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~~ 111 (278)
T PRK14172 35 IASILVGNDGGSIYYMNNQEKVANSLGIDFKKIKLDESI---SEEDLINEIEELNKDNNVHGIMLQLPLPKHLDEKKITN 111 (278)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHh
Confidence 335555555444333 45677789887765443221 123344444 34467899998876 222 22222
Q ss_pred HHHhc-CCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCC--CCccEEEEE-ccCCCchhHHH
Q 026235 120 AWKEA-GTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEE 195 (241)
Q Consensus 120 ~l~~~-~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~--~~~~~iL~~-~g~~~~~~L~~ 195 (241)
.+... ..++..-.-.|. |. . |-. .+.| -|+.+.++.|..+. ..|++++++ ||.....-|..
T Consensus 112 ~I~p~KDVDGl~~~n~g~-----l~-~------g~~-~~~P--cTp~av~~lL~~~~i~l~Gk~vvViGrS~~VGkPla~ 176 (278)
T PRK14172 112 KIDANKDIDCLTFISVGK-----FY-K------GEK-CFLP--CTPNSVITLIKSLNIDIEGKEVVVIGRSNIVGKPVAQ 176 (278)
T ss_pred ccCcccccCccCHhhHHH-----Hh-C------CCC-CCcC--CCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHH
Confidence 22111 123333332222 21 2 322 2444 48999998887663 457776665 45555566888
Q ss_pred HHHhCCCeeeEee
Q 026235 196 GLSNRGFEVVRLN 208 (241)
Q Consensus 196 ~L~~~G~~V~~~~ 208 (241)
.|.++|++|.-|.
T Consensus 177 lL~~~~AtVt~ch 189 (278)
T PRK14172 177 LLLNENATVTICH 189 (278)
T ss_pred HHHHCCCEEEEeC
Confidence 9999999887664
No 409
>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]
Probab=42.64 E-value=37 Score=29.66 Aligned_cols=74 Identities=9% Similarity=0.145 Sum_probs=49.7
Q ss_pred eCHHHHHHHHHhhhccCCCCceeecCC-CCCHHHHHHHhhhCCCCccEEEEEccCCCchhHHHHHHhCCCeeeEeeeeee
Q 026235 134 VGAGTASIFEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTT 212 (241)
Q Consensus 134 IG~~Ta~~L~~~~~~~~~Gi~~~~~p~-~~t~e~L~~~l~~~~~~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~ 212 (241)
||-.|+++|-+. |+.+...-. ..+.+.++ .|.+..++.+-+++.|--..+.++.+.+++....+-.+.+--+
T Consensus 17 IGl~~sk~Ll~k------gik~~~i~~~~En~~a~a-kL~ai~p~~~v~F~~~DVt~~~~~~~~f~ki~~~fg~iDIlIN 89 (261)
T KOG4169|consen 17 IGLATSKALLEK------GIKVLVIDDSEENPEAIA-KLQAINPSVSVIFIKCDVTNRGDLEAAFDKILATFGTIDILIN 89 (261)
T ss_pred hhHHHHHHHHHc------CchheeehhhhhCHHHHH-HHhccCCCceEEEEEeccccHHHHHHHHHHHHHHhCceEEEEc
Confidence 788999999999 988744332 22333333 4555555555566666656678888888888777777777655
Q ss_pred ec
Q 026235 213 EP 214 (241)
Q Consensus 213 ~~ 214 (241)
..
T Consensus 90 gA 91 (261)
T KOG4169|consen 90 GA 91 (261)
T ss_pred cc
Confidence 43
No 410
>PRK06128 oxidoreductase; Provisional
Probab=42.52 E-value=2e+02 Score=24.96 Aligned_cols=89 Identities=11% Similarity=0.083 Sum_probs=48.9
Q ss_pred CCCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCC-CccEE--EEeCHHHHHHHHHH
Q 026235 45 SASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT-IFDWI--IITSPEAGSVFLEA 120 (241)
Q Consensus 45 ~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~-~~d~I--iFTS~~aV~~f~~~ 120 (241)
...+.||+||||..... ...+++.|.++|++|... +......+.+.+.+.+...+ +..++ =+++...++.+++.
T Consensus 50 ~~~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~ 127 (300)
T PRK06128 50 FGRLQGRKALITGADSGIGRATAIAFAREGADIALN--YLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVER 127 (300)
T ss_pred ccccCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEE--eCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHH
Confidence 34588999999987653 678899999999987532 11100011122333332221 12221 14778888888776
Q ss_pred HHh-cCCCCcEEEEeC
Q 026235 121 WKE-AGTPNVRIGVVG 135 (241)
Q Consensus 121 l~~-~~~~~~~i~aIG 135 (241)
+.+ .+.-+.-|.+.|
T Consensus 128 ~~~~~g~iD~lV~nAg 143 (300)
T PRK06128 128 AVKELGGLDILVNIAG 143 (300)
T ss_pred HHHHhCCCCEEEECCc
Confidence 543 222244444444
No 411
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=42.52 E-value=2.3e+02 Score=26.57 Aligned_cols=140 Identities=9% Similarity=0.029 Sum_probs=75.2
Q ss_pred ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHH---HHHhcCCCccEEEEeCHHHH--HHHHHHHHhcCC-------CC
Q 026235 61 KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLS---SVLNADTIFDWIIITSPEAG--SVFLEAWKEAGT-------PN 128 (241)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~---~~l~~l~~~d~IiFTS~~aV--~~f~~~l~~~~~-------~~ 128 (241)
..+.+.+.|++.|++++..|... .+.++.. +.++. .+.|.||+.-.+-. +.+...+...+. +.
T Consensus 24 ~~~~~~~~l~~~~~~vv~~~~~~----~~~~~~~~~~~~~~~-~~~d~ii~~~~tf~~~~~~~~~~~~~~~Pvll~a~~~ 98 (452)
T cd00578 24 YAREVADLLNELPVEVVDKPEVT----GTPDEARKAAEEFNE-ANCDGLIVWMHTFGPAKMWIAGLSELRKPVLLLATQF 98 (452)
T ss_pred HHHHHHHHHhcCCceEEecCccc----CCHHHHHHHHHHHhh-cCCcEEEEcccccccHHHHHHHHHhcCCCEEEEeCCC
Confidence 46678888888899999988664 1222333 33333 47899887332211 112222222221 11
Q ss_pred ----------cEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhC--------CCCccEEEEEccCCCc
Q 026235 129 ----------VRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN--------GKKKCTVLYPASAKAS 190 (241)
Q Consensus 129 ----------~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~--------~~~~~~iL~~~g~~~~ 190 (241)
..-+|==..++..|++. |++..++-.....+...+.|.++ ..++.|+..+.+. .+
T Consensus 99 ~~~~~~~~~~~~s~~g~~~~~~~l~r~------gi~~~~v~g~~~d~~~~~~i~~~~raa~~~~~lr~~rig~iG~~-~~ 171 (452)
T cd00578 99 NREIPDFMNLNQSACGLREFGNILARL------GIPFKVVYGHWKDEDVLRKIESWARAAAAVATLRGLRVGRFGDR-MR 171 (452)
T ss_pred CCCCCchhhhhcchhhhHHHHHHHHHc------CCceeEEECCCCCHHHHHHHHHHHHHHHHHHHhhcCceEEECCC-cC
Confidence 12222223467778888 99876543222224444444332 1356788888432 22
Q ss_pred h------hHHHHHHhCCCeeeEeeeeee
Q 026235 191 N------EIEEGLSNRGFEVVRLNTYTT 212 (241)
Q Consensus 191 ~------~L~~~L~~~G~~V~~~~vY~~ 212 (241)
. +..+.+++-|++|..+.+.+-
T Consensus 172 ~~~~~~~d~~~~~~~fG~~v~~i~~~el 199 (452)
T cd00578 172 GMAVTEGDKVLAQIKFGVSVEYLEVGEL 199 (452)
T ss_pred CcEEecCCHHHHHHhhCeEEEEEcHHHH
Confidence 1 233556777999998887644
No 412
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=42.38 E-value=1.8e+02 Score=27.90 Aligned_cols=104 Identities=19% Similarity=0.110 Sum_probs=58.0
Q ss_pred CChHHHHHHHHHCC-CcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHH----HHHHHHHHHhcCCCCcEEEEe
Q 026235 60 GKNGKLIKALAKHR-IDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA----GSVFLEAWKEAGTPNVRIGVV 134 (241)
Q Consensus 60 ~~~~~l~~~L~~~G-~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~a----V~~f~~~l~~~~~~~~~i~aI 134 (241)
.+-..++..|++.| .+|..+-... .+. +.+.+.+.+. ...+|.|.||+-.. +..+.+.+++. .+++++++-
T Consensus 23 lgl~~lAa~L~~~G~~~V~iiD~~~-~~~-~~~~~~~~l~-~~~pdvVgis~~t~~~~~a~~~~~~~k~~-~P~~~iV~G 98 (497)
T TIGR02026 23 LWVAYIGGALLDAGYHDVTFLDAMT-GPL-TDEKLVERLR-AHCPDLVLITAITPAIYIACETLKFARER-LPNAIIVLG 98 (497)
T ss_pred HHHHHHHHHHHhcCCcceEEecccc-cCC-CHHHHHHHHH-hcCcCEEEEecCcccHHHHHHHHHHHHHH-CCCCEEEEc
Confidence 34567888899999 6887776532 222 2344555553 35799999987432 22233333332 367888888
Q ss_pred CHHHH----HHHHHhhhccCCCCceeecCC-CCCHHHHHHHhh
Q 026235 135 GAGTA----SIFEEVIQSSKCSLDVAFSPS-KATGKILASELP 172 (241)
Q Consensus 135 G~~Ta----~~L~~~~~~~~~Gi~~~~~p~-~~t~e~L~~~l~ 172 (241)
|+... +.|.+. -+++..+..+ +.+...|++.+.
T Consensus 99 G~h~t~~~~~~l~~~-----p~vD~Vv~GEGE~~~~~Ll~~l~ 136 (497)
T TIGR02026 99 GIHPTFMFHQVLTEA-----PWIDFIVRGEGEETVVKLIAALE 136 (497)
T ss_pred CCCcCcCHHHHHhcC-----CCccEEEeCCcHHHHHHHHHHHH
Confidence 87533 333332 1455545444 233445555543
No 413
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=42.33 E-value=50 Score=26.14 Aligned_cols=77 Identities=18% Similarity=0.163 Sum_probs=49.8
Q ss_pred CCCCCeEEEe-CCCCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcC
Q 026235 47 SNSNPKVVVT-RERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAG 125 (241)
Q Consensus 47 ~l~g~~VLit-R~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~ 125 (241)
+++|++|++. |+......++..|.+.|+++....-. ...+++.+ ...|.||-..... ..+-..+ -
T Consensus 25 ~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~-------t~~l~~~v---~~ADIVvsAtg~~-~~i~~~~---i 90 (140)
T cd05212 25 RLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWK-------TIQLQSKV---HDADVVVVGSPKP-EKVPTEW---I 90 (140)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCC-------CcCHHHHH---hhCCEEEEecCCC-CccCHHH---c
Confidence 5678998876 77778999999999999988876421 12233333 6788888776665 3222211 1
Q ss_pred CCCcEEEEeCHH
Q 026235 126 TPNVRIGVVGAG 137 (241)
Q Consensus 126 ~~~~~i~aIG~~ 137 (241)
.++..+.-+|..
T Consensus 91 kpGa~Vidvg~~ 102 (140)
T cd05212 91 KPGATVINCSPT 102 (140)
T ss_pred CCCCEEEEcCCC
Confidence 246667767654
No 414
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=42.29 E-value=50 Score=31.19 Aligned_cols=47 Identities=13% Similarity=0.030 Sum_probs=39.5
Q ss_pred ccceeccccccccCCCCCCCeEEEeCCCCChHHHHHHHHHCCCcEEE
Q 026235 32 FSRIQASSDATSASASNSNPKVVVTRERGKNGKLIKALAKHRIDCLE 78 (241)
Q Consensus 32 ~~~~~~~~~~~~~~~~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~ 78 (241)
|.+.++-|..=-+..++.||+|+|.........++..|.+.|++|..
T Consensus 157 f~g~~~HS~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~ 203 (443)
T COG2072 157 FKGRILHSADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTL 203 (443)
T ss_pred CCceEEchhcCCCccccCCCeEEEECCCccHHHHHHHHHhcCCeeEE
Confidence 45567777777778999999999999998899999999999966654
No 415
>PLN02778 3,5-epimerase/4-reductase
Probab=42.07 E-value=1.1e+02 Score=27.01 Aligned_cols=57 Identities=16% Similarity=0.117 Sum_probs=37.3
Q ss_pred CCCeEEEeCCCC-ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeC
Q 026235 49 SNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS 110 (241)
Q Consensus 49 ~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS 110 (241)
..|+||||...+ -+..+.+.|.++|.+|... .....+.+.+...+.. .++|+||-..
T Consensus 8 ~~~kiLVtG~tGfiG~~l~~~L~~~g~~V~~~----~~~~~~~~~v~~~l~~-~~~D~ViH~A 65 (298)
T PLN02778 8 ATLKFLIYGKTGWIGGLLGKLCQEQGIDFHYG----SGRLENRASLEADIDA-VKPTHVFNAA 65 (298)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCCCEEEEe----cCccCCHHHHHHHHHh-cCCCEEEECC
Confidence 348899999875 4778999999999987532 1122333445555533 3689988444
No 416
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.05 E-value=2.2e+02 Score=25.36 Aligned_cols=141 Identities=18% Similarity=0.156 Sum_probs=78.3
Q ss_pred EEEeCCCCChHHH----HHHHHHCCCcEEEeceEEEeeCCCchHHHHHHh---cCCCccEEEEeCH--HHHH--HHHHHH
Q 026235 53 VVVTRERGKNGKL----IKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN---ADTIFDWIIITSP--EAGS--VFLEAW 121 (241)
Q Consensus 53 VLitR~~~~~~~l----~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~---~l~~~d~IiFTS~--~aV~--~f~~~l 121 (241)
++.....+.+..+ .+.+++.|+++..+-+-+. ...+++.+.+. .....|.|+.--| ..++ ..++.+
T Consensus 35 ii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~---~t~~~l~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I 111 (282)
T PRK14166 35 VILVGDNPASQTYVKSKAKACEECGIKSLVYHLNEN---TTQNELLALINTLNHDDSVHGILVQLPLPDHICKDLILESI 111 (282)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCC---CCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcc
Confidence 4555554444333 3456777988776544321 12234444443 3468899998877 2222 122222
Q ss_pred Hh-cCCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCC--CCccEEEEE-ccCCCchhHHHHH
Q 026235 122 KE-AGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEEGL 197 (241)
Q Consensus 122 ~~-~~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~--~~~~~iL~~-~g~~~~~~L~~~L 197 (241)
.. ...++..-.-.|.-- . |....+.| -|+.+.++.|..+. ..|++++++ ||.....-|...|
T Consensus 112 ~p~KDVDGl~~~N~g~l~------~------g~~~~~~P--cTp~avi~lL~~y~i~l~Gk~vvVvGrS~iVGkPla~lL 177 (282)
T PRK14166 112 ISSKDVDGFHPINVGYLN------L------GLESGFLP--CTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATML 177 (282)
T ss_pred CcccCcccCChhhhHHHh------c------CCCCCCcC--CCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHH
Confidence 21 122444444444221 2 42222444 58999998887653 457776655 5555556688899
Q ss_pred HhCCCeeeEeeee
Q 026235 198 SNRGFEVVRLNTY 210 (241)
Q Consensus 198 ~~~G~~V~~~~vY 210 (241)
.++|++|+-|.-+
T Consensus 178 ~~~~atVt~chs~ 190 (282)
T PRK14166 178 LNAGATVSVCHIK 190 (282)
T ss_pred HHCCCEEEEeCCC
Confidence 9999999766543
No 417
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.04 E-value=2.3e+02 Score=25.32 Aligned_cols=157 Identities=14% Similarity=0.129 Sum_probs=85.4
Q ss_pred EEEeCCCCChHH----HHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHh---cCCCccEEEEeCHH--HH--HHHHHHH
Q 026235 53 VVVTRERGKNGK----LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN---ADTIFDWIIITSPE--AG--SVFLEAW 121 (241)
Q Consensus 53 VLitR~~~~~~~----l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~---~l~~~d~IiFTS~~--aV--~~f~~~l 121 (241)
++.....+.+.. ..+.+++.|+++..+-+-+. ...+++.+.+. ...+.|.|+.--|= .+ +..++.+
T Consensus 38 ii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~---~s~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I 114 (284)
T PRK14177 38 TILVGNNPASETYVSMKVKACHKVGMGSEMIRLKEQ---TTTEELLGVIDKLNLDPNVDGILLQHPVPSQIDERAAFDRI 114 (284)
T ss_pred EEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCC---CCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhcc
Confidence 555555544433 34567788988776543221 12344444443 44788999998772 22 2222222
Q ss_pred Hhc-CCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCC--CCccEEEEE-ccCCCchhHHHHH
Q 026235 122 KEA-GTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEEGL 197 (241)
Q Consensus 122 ~~~-~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~--~~~~~iL~~-~g~~~~~~L~~~L 197 (241)
... ..++..-.-.|. |- . |-. .+.| -|+.+.++.|..+. ..|++++++ ||.....-|...|
T Consensus 115 ~p~KDVDGl~~~n~g~-----l~-~------g~~-~~~P--cTp~avi~ll~~y~i~l~Gk~vvViGrS~iVGkPla~lL 179 (284)
T PRK14177 115 ALEKDVDGVTTLSFGK-----LS-M------GVE-TYLP--CTPYGMVLLLKEYGIDVTGKNAVVVGRSPILGKPMAMLL 179 (284)
T ss_pred CcccccccCChhhHHH-----HH-c------CCC-CCCC--CCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHH
Confidence 211 123444333332 21 2 432 2444 48899998887653 457776555 5555556688999
Q ss_pred HhCCCeeeEeeeeeeecCCCChHHHHHHcCCCCEEEEE
Q 026235 198 SNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVA 235 (241)
Q Consensus 198 ~~~G~~V~~~~vY~~~~~~~~~~~~~~~l~~id~IvFt 235 (241)
.++|++|.-|.-.. . ++.+...+.|+|+-.
T Consensus 180 ~~~~atVt~chs~T----~----~l~~~~~~ADIvIsA 209 (284)
T PRK14177 180 TEMNATVTLCHSKT----Q----NLPSIVRQADIIVGA 209 (284)
T ss_pred HHCCCEEEEeCCCC----C----CHHHHHhhCCEEEEe
Confidence 99999987664221 1 122223567777644
No 418
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=41.98 E-value=81 Score=26.07 Aligned_cols=15 Identities=7% Similarity=0.279 Sum_probs=12.0
Q ss_pred HHcCCCCEEEEECCc
Q 026235 224 KQALSIPVVAVASPS 238 (241)
Q Consensus 224 ~~l~~id~IvFtSps 238 (241)
+.+...|.|+|-||.
T Consensus 65 ~~l~~aD~ii~gsPt 79 (200)
T PRK03767 65 DELADYDAIIFGTPT 79 (200)
T ss_pred HHHHhCCEEEEEecc
Confidence 345689999999985
No 419
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=41.91 E-value=23 Score=27.11 Aligned_cols=82 Identities=20% Similarity=0.267 Sum_probs=36.1
Q ss_pred hHHHHHHHHHCCCcEEEeceEEE----eeCCCchHHHHHHhcC--CCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeC
Q 026235 62 NGKLIKALAKHRIDCLELPLIQH----AQGPDTDRLSSVLNAD--TIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVG 135 (241)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~----~~~~~~~~l~~~l~~l--~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG 135 (241)
...+.+.|+..|+.+...|.... +...|..-..+.+... +.+|.+++-|.-+ -|...+....-.+.++..+|
T Consensus 49 ~~~~~~~L~~~g~~v~~~~~~~~~~~~k~~~D~~l~~d~~~~~~~~~~d~ivLvSgD~--Df~~~v~~l~~~g~~V~v~~ 126 (146)
T PF01936_consen 49 QKSFQEALQRAGIKVRHFPLRKRGGGGKKGVDVALAVDILELAYENPPDTIVLVSGDS--DFAPLVRKLRERGKRVIVVG 126 (146)
T ss_dssp HHHHHHHHHHHT-EEEE------S---S---HHHHHHHHHHHG--GG-SEEEEE---G--GGHHHHHHHHHH--EEEEEE
T ss_pred hhhHHHHHHhCeeeEEeeecccccccccCCcHHHHHHHHHHHhhccCCCEEEEEECcH--HHHHHHHHHHHcCCEEEEEE
Confidence 46677889999999988888642 1111211112222222 4458888877763 24333332222346666666
Q ss_pred --HHHHHHHHHh
Q 026235 136 --AGTASIFEEV 145 (241)
Q Consensus 136 --~~Ta~~L~~~ 145 (241)
..+.+.|++.
T Consensus 127 ~~~~~s~~L~~~ 138 (146)
T PF01936_consen 127 AEDSASEALRSA 138 (146)
T ss_dssp -GGGS-HHHHHH
T ss_pred eCCCCCHHHHHh
Confidence 5677777765
No 420
>PRK05967 cystathionine beta-lyase; Provisional
Probab=41.88 E-value=2.2e+02 Score=26.49 Aligned_cols=97 Identities=16% Similarity=0.082 Sum_probs=52.8
Q ss_pred eCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEccCCCch--hHHHHHHhCCCeeeEeeeee
Q 026235 134 VGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASN--EIEEGLSNRGFEVVRLNTYT 211 (241)
Q Consensus 134 IG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~~~~~~iL~~~g~~~~~--~L~~~L~~~G~~V~~~~vY~ 211 (241)
.|.-|.+.|++.+..--.|-...+++. .++++.-.+.....+|.+|+++...-+.- .+.+.++..|++|..+..
T Consensus 61 ~gnPt~~~Le~~la~le~~~~~v~~sS--G~aAi~~~l~all~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi~v~~vd~-- 136 (395)
T PRK05967 61 RGTPTTDALCKAIDALEGSAGTILVPS--GLAAVTVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLKRLGVEVEYYDP-- 136 (395)
T ss_pred CCChHHHHHHHHHHHHhCCCCEEEECc--HHHHHHHHHHHhcCCCCEEEEccCCcHHHHHHHHHHHHhcCeEEEEeCC--
Confidence 566676666654311111222223322 45666555555555678888876544332 234677888887765421
Q ss_pred eecCCCChHHHHHHc-CCCCEEEEECCcc
Q 026235 212 TEPVHHVDQTVLKQA-LSIPVVAVASPSA 239 (241)
Q Consensus 212 ~~~~~~~~~~~~~~l-~~id~IvFtSps~ 239 (241)
.+ .+.+.+.+ .+...|++.||++
T Consensus 137 ----~~-~e~l~~al~~~TklV~lesPsN 160 (395)
T PRK05967 137 ----EI-GAGIAKLMRPNTKVVHTEAPGS 160 (395)
T ss_pred ----CC-HHHHHHhcCcCceEEEEECCCC
Confidence 11 22344444 4677889888874
No 421
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=41.84 E-value=99 Score=25.78 Aligned_cols=45 Identities=13% Similarity=0.027 Sum_probs=27.8
Q ss_pred HHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCC---CCcEEEEeCHH
Q 026235 93 LSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGAG 137 (241)
Q Consensus 93 l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~---~~~~i~aIG~~ 137 (241)
+.+.++.-..+|+|+.++......+.+.+.+.++ +++.+++++..
T Consensus 167 ~~~~l~~~~~~~aii~~~~~~a~~~~~~l~~~g~~ip~di~vi~~d~~ 214 (265)
T cd06290 167 VEELLQRGPDFTAIFAANDQTAYGARLALYRRGLRVPEDVSLIGFDDL 214 (265)
T ss_pred HHHHHcCCCCCCEEEEcCcHHHHHHHHHHHHcCCCCCcceEEeeecCc
Confidence 4444433345678887777766666777776664 35666666644
No 422
>PRK06138 short chain dehydrogenase; Provisional
Probab=41.75 E-value=1.5e+02 Score=24.46 Aligned_cols=33 Identities=12% Similarity=0.054 Sum_probs=24.5
Q ss_pred CCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEe
Q 026235 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (241)
Q Consensus 47 ~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (241)
.++|+++|||..... ...+++.|.+.|+++.-+
T Consensus 2 ~~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~ 35 (252)
T PRK06138 2 RLAGRVAIVTGAGSGIGRATAKLFAREGARVVVA 35 (252)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEe
Confidence 356889999988643 677888888888876543
No 423
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=41.66 E-value=1.5e+02 Score=22.22 Aligned_cols=95 Identities=14% Similarity=0.152 Sum_probs=52.5
Q ss_pred CeEEEeCCCCC-----hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhc-
Q 026235 51 PKVVVTRERGK-----NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA- 124 (241)
Q Consensus 51 ~~VLitR~~~~-----~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~- 124 (241)
++||+.++.+- ...+.+.++++|.++. +.... ..++...+ ...++|.| +++|+ |++-.+.+++.
T Consensus 2 kkILlvCg~G~STSlla~k~k~~~~e~gi~~~------i~a~~-~~e~~~~~-~~~~~DvI-ll~PQ-i~~~~~~i~~~~ 71 (104)
T PRK09590 2 KKALIICAAGMSSSMMAKKTTEYLKEQGKDIE------VDAIT-ATEGEKAI-AAAEYDLY-LVSPQ-TKMYFKQFEEAG 71 (104)
T ss_pred cEEEEECCCchHHHHHHHHHHHHHHHCCCceE------EEEec-HHHHHHhh-ccCCCCEE-EEChH-HHHHHHHHHHHh
Confidence 57887777653 3445667778888633 22211 12233322 23468844 45554 45545545442
Q ss_pred CCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhh
Q 026235 125 GTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (241)
Q Consensus 125 ~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~ 173 (241)
...++++.+|.+.. + .|-..+.+.++..|.+
T Consensus 72 ~~~~ipv~~I~~~~------Y------------~~~~~~~~~~~~~~~~ 102 (104)
T PRK09590 72 AKVGKPVVQIPPQA------Y------------IPIPMGIEKMAKLILE 102 (104)
T ss_pred hhcCCCEEEeCHHH------c------------CCCccCHHHHHHHHHh
Confidence 22468888887641 3 3445788888877654
No 424
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=41.56 E-value=72 Score=29.12 Aligned_cols=66 Identities=15% Similarity=0.069 Sum_probs=38.3
Q ss_pred CHHHHHHHhhhCCCCccEEEEEccCCCc--hhHHHHHHhCCCeeeEeeeeeeecCCCChH---HHHHHc--CCCCEEE
Q 026235 163 TGKILASELPKNGKKKCTVLYPASAKAS--NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQ---TVLKQA--LSIPVVA 233 (241)
Q Consensus 163 t~e~L~~~l~~~~~~~~~iL~~~g~~~~--~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~---~~~~~l--~~id~Iv 233 (241)
..+.+.+.+.+.. .+|++++++.... +.+.+.|++.|+++ .+|.-.......+ +..+.. .++|+||
T Consensus 10 ~l~~l~~~~~~~g--~~~~livtd~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~p~~~~v~~~~~~~~~~~~D~II 82 (367)
T cd08182 10 AIAKLPSLLKGLG--GKRVLLVTGPRSAIASGLTDILKPLGTLV---VVFDDVQPNPDLEDLAAGIRLLREFGPDAVL 82 (367)
T ss_pred HHHHHHHHHHhcC--CCeEEEEeCchHHHHHHHHHHHHHcCCeE---EEEcCcCCCcCHHHHHHHHHHHHhcCcCEEE
Confidence 4456666665542 3689999876543 56788898887544 4554443333232 223222 4789887
No 425
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=41.55 E-value=76 Score=24.54 Aligned_cols=33 Identities=9% Similarity=0.183 Sum_probs=21.5
Q ss_pred CCCccEEEEeCHH--------HHHHHHHHHHhcCCCCcEEEEeC
Q 026235 100 DTIFDWIIITSPE--------AGSVFLEAWKEAGTPNVRIGVVG 135 (241)
Q Consensus 100 l~~~d~IiFTS~~--------aV~~f~~~l~~~~~~~~~i~aIG 135 (241)
+.++|.|+|-|+. .+..|++.+.. ++.+++++|
T Consensus 48 ~~~~d~iilgs~t~~~g~~p~~~~~fl~~l~~---~~k~~avfg 88 (140)
T TIGR01754 48 PENYDLVFLGTWTWERGRTPDEMKDFIAELGY---KPSNVAIFG 88 (140)
T ss_pred hhhCCEEEEEcCeeCCCcCCHHHHHHHHHhcc---cCCEEEEEE
Confidence 4578999998863 45666655432 456777766
No 426
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=41.54 E-value=86 Score=28.86 Aligned_cols=68 Identities=16% Similarity=0.151 Sum_probs=39.0
Q ss_pred CHHHHHHHhhhCCC-CccEEEEEccCCCc------hhHHHHHHhCCCeeeEeeeeeeecCCCChH---HHHHHc--CCCC
Q 026235 163 TGKILASELPKNGK-KKCTVLYPASAKAS------NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQ---TVLKQA--LSIP 230 (241)
Q Consensus 163 t~e~L~~~l~~~~~-~~~~iL~~~g~~~~------~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~---~~~~~l--~~id 230 (241)
..+.+-+.+.+... ..+|+|++++.... +.+.+.|++.|+++ .+|.-..+....+ +..+.+ .++|
T Consensus 10 ~~~~l~~~l~~~~~~g~kr~livtd~~~~~~~g~~~~v~~~L~~~gi~~---~~f~~v~~~p~~~~v~~~~~~~~~~~~D 86 (383)
T cd08186 10 AIEKIGEILKDLKSKGISKVLLVTGKSAYKKSGAWDKVEPALDEHGIEY---VLYNKVTPNPTVDQVDEAAKLGREFGAQ 86 (383)
T ss_pred HHHHHHHHHHHhcccCCCEEEEEcCccHHhhcChHHHHHHHHHHcCCeE---EEeCCCCCCCCHHHHHHHHHHHHHcCCC
Confidence 34556666655421 12689999886431 46888999888754 4554333333232 222222 4788
Q ss_pred EEE
Q 026235 231 VVA 233 (241)
Q Consensus 231 ~Iv 233 (241)
+|+
T Consensus 87 ~II 89 (383)
T cd08186 87 AVI 89 (383)
T ss_pred EEE
Confidence 877
No 427
>PF13379 NMT1_2: NMT1-like family; PDB: 2G29_A 3UN6_A 2I4C_A 2I49_A 2I4B_A 2I48_A 3QSL_A.
Probab=41.51 E-value=1.1e+02 Score=26.02 Aligned_cols=141 Identities=15% Similarity=0.114 Sum_probs=67.7
Q ss_pred HHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHHHHHHhhh
Q 026235 68 ALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQ 147 (241)
Q Consensus 68 ~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~L~~~~~ 147 (241)
.++++|.++. .+.........+.+ .-++.|.... ....+.....- .+-.+.++.+++.. ...
T Consensus 29 ~f~~~G~~ve------~~~~~~g~~~~~al-~~G~iD~a~~-~~~~~~~~~~g---~~~~~~~~~~~~~~-----~~~-- 90 (252)
T PF13379_consen 29 LFEKEGLDVE------WVQFASGADILEAL-AAGEIDIAFV-LAPALIAIAKG---AGGPDVDIVVLAGL-----SQN-- 90 (252)
T ss_dssp HHHHTTSCEE------EEEESSHHHHHHHH-HCTSSSEEEE-CTHHHHHHHTT---TTT----EEEEEEC-----SBS--
T ss_pred hHHHcCCEEE------EEEcCCHHHHHHHH-HcCCCCEEEe-chHHHHHHHcC---CCCcccceEEeecc-----CCC--
Confidence 6778898862 22223444555555 3588999888 55554332211 01122344444321 112
Q ss_pred ccCCCCceeecC-------CCCCHHHHHHHhhhCCCCccEEEEEccCCCch-hHHHHHHhCCCee-eEeeeeeeecCCCC
Q 026235 148 SSKCSLDVAFSP-------SKATGKILASELPKNGKKKCTVLYPASAKASN-EIEEGLSNRGFEV-VRLNTYTTEPVHHV 218 (241)
Q Consensus 148 ~~~~Gi~~~~~p-------~~~t~e~L~~~l~~~~~~~~~iL~~~g~~~~~-~L~~~L~~~G~~V-~~~~vY~~~~~~~~ 218 (241)
|... ++. ...+.++|++..... +|++|..+....... .+...|++.|.+. ..+.+-..-+
T Consensus 91 ----g~~l-vv~~~~~~~~~~~~~~dl~~~~~~~--kGk~i~~~~~gs~~~~~l~~~l~~~Gl~~~~dv~~~~~~~---- 159 (252)
T PF13379_consen 91 ----GNAL-VVRNDLKDASDIKSLADLIKKRKAQ--KGKKIAVPFPGSTHDMLLRYLLKKAGLDPKDDVTLVNVPP---- 159 (252)
T ss_dssp ----SEEE-EECGGGTTCSTTCCGHHHHHTCCSC--STEEEEESSTTSHHHHHHHHHHHHTT--TTTSSEEEE--G----
T ss_pred ----ceEE-EEcCccccCCCccCHHHHHhhhccc--CCcEEEEcCCCCHHHHHHHHHHHhCCCCcccceEEEecCH----
Confidence 4222 332 233445554443322 578888854433333 4667899999887 3333222211
Q ss_pred hHHHHHHc--CCCCEEEEECCc
Q 026235 219 DQTVLKQA--LSIPVVAVASPS 238 (241)
Q Consensus 219 ~~~~~~~l--~~id~IvFtSps 238 (241)
.+....+ +++|+++..-|.
T Consensus 160 -~~~~~al~~g~iDa~~~~eP~ 180 (252)
T PF13379_consen 160 -PEMVAALRAGEIDAAVLWEPF 180 (252)
T ss_dssp -HHHHHHHHTTS-SEEEEETTH
T ss_pred -HHHHHHHhCCCcCEEEecCCH
Confidence 2233333 789998887663
No 428
>PRK08105 flavodoxin; Provisional
Probab=41.46 E-value=1.3e+02 Score=23.87 Aligned_cols=69 Identities=17% Similarity=0.158 Sum_probs=37.7
Q ss_pred hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCc-cEEEEeCHH-------HHHHHHHHHHhc--CCCCcEE
Q 026235 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIF-DWIIITSPE-------AGSVFLEAWKEA--GTPNVRI 131 (241)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~-d~IiFTS~~-------aV~~f~~~l~~~--~~~~~~i 131 (241)
++.+.+.|++.|+++..+++..... + ....+ -+|++||.- ....|+..+.+. .+.++++
T Consensus 19 A~~l~~~l~~~g~~~~~~~~~~~~~----------~-~~~~~~~vi~~~sT~G~Ge~p~~~~~f~~~l~~~~~~l~~~~~ 87 (149)
T PRK08105 19 AEEAEAILTAQGHEVTLFEDPELSD----------W-QPYQDELVLVVTSTTGQGDLPDSIVPLFQALKDTAGYQPNLRY 87 (149)
T ss_pred HHHHHHHHHhCCCceEEechhhCCc----------h-hcccCCeEEEEECCCCCCCCChhHHHHHHHHHhcCcccCCCEE
Confidence 3455566777899888776543211 1 11222 355666653 345566666654 4566777
Q ss_pred EEeCHHHHHH
Q 026235 132 GVVGAGTASI 141 (241)
Q Consensus 132 ~aIG~~Ta~~ 141 (241)
++.|-.-..+
T Consensus 88 avfGlGds~Y 97 (149)
T PRK08105 88 GVIALGDSSY 97 (149)
T ss_pred EEEeeecCCH
Confidence 7766543333
No 429
>PLN02735 carbamoyl-phosphate synthase
Probab=41.35 E-value=3.1e+02 Score=29.32 Aligned_cols=75 Identities=17% Similarity=0.098 Sum_probs=47.7
Q ss_pred ccccccCCCCCCCeEEEeCCCCC-----------hHHHHHHHHHCCCcEEEeceEE--------------EeeCCCchHH
Q 026235 39 SDATSASASNSNPKVVVTRERGK-----------NGKLIKALAKHRIDCLELPLIQ--------------HAQGPDTDRL 93 (241)
Q Consensus 39 ~~~~~~~~~l~g~~VLitR~~~~-----------~~~l~~~L~~~G~~v~~~P~~~--------------~~~~~~~~~l 93 (241)
|.+|.......-++|||..+..- +..+.+.|++.|++|+.+-.-. +.|. +.+.+
T Consensus 12 ~~~~~~~~~~~~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke~G~~Vi~vd~np~t~~~~~~~aD~~yi~p~-~~e~v 90 (1102)
T PLN02735 12 SAATKAGKRTDLKKIMILGAGPIVIGQACEFDYSGTQACKALKEEGYEVVLINSNPATIMTDPETADRTYIAPM-TPELV 90 (1102)
T ss_pred cccccCCcccCCCEEEEECCCccccccceeecchHHHHHHHHHHcCCEEEEEeCCcccccCChhhCcEEEeCCC-CHHHH
Confidence 45666666666789999987652 3468999999999988765311 1121 22334
Q ss_pred HHHHhcCCCccEEEEe--CHHHHH
Q 026235 94 SSVLNADTIFDWIIIT--SPEAGS 115 (241)
Q Consensus 94 ~~~l~~l~~~d~IiFT--S~~aV~ 115 (241)
.+.++ -.++|+|+-| +..+..
T Consensus 91 ~~ii~-~e~~D~Iip~~gg~~gl~ 113 (1102)
T PLN02735 91 EQVIA-KERPDALLPTMGGQTALN 113 (1102)
T ss_pred HHHHH-HhCCCEEEECCCchhhHH
Confidence 44443 3678999975 445544
No 430
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=41.11 E-value=50 Score=25.75 Aligned_cols=49 Identities=18% Similarity=0.209 Sum_probs=33.6
Q ss_pred hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhc-CCCccEEEEeCHHHH
Q 026235 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA-DTIFDWIIITSPEAG 114 (241)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~-l~~~d~IiFTS~~aV 114 (241)
...+.+.|+++|+++....+.. ++.+.+.+.+.. +...|.||.|-..++
T Consensus 19 ~~~l~~~l~~~G~~v~~~~~v~----Dd~~~i~~~l~~~~~~~D~VittGG~g~ 68 (144)
T PF00994_consen 19 GPFLAALLEELGIEVIRYGIVP----DDPDAIKEALRRALDRADLVITTGGTGP 68 (144)
T ss_dssp HHHHHHHHHHTTEEEEEEEEEE----SSHHHHHHHHHHHHHTTSEEEEESSSSS
T ss_pred HHHHHHHHHHcCCeeeEEEEEC----CCHHHHHHHHHhhhccCCEEEEcCCcCc
Confidence 5678889999999877665443 455566666643 256799988876653
No 431
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=41.07 E-value=56 Score=29.61 Aligned_cols=67 Identities=16% Similarity=0.141 Sum_probs=37.2
Q ss_pred HHHHHHHhhhCCCCccEEEEEccCCCc----hhHHHHHHhCCCeeeEeeeeeeecCCCChHHHHHHc--CCCCEEE
Q 026235 164 GKILASELPKNGKKKCTVLYPASAKAS----NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVA 233 (241)
Q Consensus 164 ~e~L~~~l~~~~~~~~~iL~~~g~~~~----~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~l--~~id~Iv 233 (241)
.+.+.+.+.+. ++|+|++++.... +.+.+.|++.|+++..+..+.-.+......+..+.. .++|+|+
T Consensus 11 ~~~l~~~~~~~---~~r~liv~d~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~ii 83 (345)
T cd08171 11 YKKIPEVCEKY---GKKVVVIGGKTALAAAKDKIKAALEQSGIEITDFIWYGGESTYENVERLKKNPAVQEADMIF 83 (345)
T ss_pred HHHHHHHHHhc---CCEEEEEeCHHHHHHHHHHHHHHHHHCCCeEEEEEecCCCCCHHHHHHHHHHHhhcCCCEEE
Confidence 45555555542 3789999886432 457788888887765444443332211112222222 4788876
No 432
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=40.81 E-value=66 Score=27.62 Aligned_cols=44 Identities=14% Similarity=0.164 Sum_probs=19.1
Q ss_pred CccEEEEe--CHHHHHHHHHHHHhcCCC--CcEEEEeCHHHHHHHHHh
Q 026235 102 IFDWIIIT--SPEAGSVFLEAWKEAGTP--NVRIGVVGAGTASIFEEV 145 (241)
Q Consensus 102 ~~d~IiFT--S~~aV~~f~~~l~~~~~~--~~~i~aIG~~Ta~~L~~~ 145 (241)
....++.| |....+.+.+.+...+++ .-.+++-|..+++.|++.
T Consensus 33 g~~~~~~Tnn~~r~~~~~~~~l~~~g~~~~~~~iit~~~~~~~~l~~~ 80 (249)
T TIGR01457 33 DIPYLFVTNNSTRTPESVAEMLASFDIPATLETVFTASMATADYMNDL 80 (249)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHcCCCCChhhEeeHHHHHHHHHHhc
Confidence 33444444 233344444444444432 123555555555555543
No 433
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=40.62 E-value=1.4e+02 Score=24.38 Aligned_cols=30 Identities=17% Similarity=0.100 Sum_probs=23.1
Q ss_pred CCCCeEEEeCCCCC-hHHHHHHHHHCCCcEE
Q 026235 48 NSNPKVVVTRERGK-NGKLIKALAKHRIDCL 77 (241)
Q Consensus 48 l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~ 77 (241)
+.+++||||..... +..+.+.|.++|+++.
T Consensus 4 ~~~~~vlItGasg~iG~~l~~~l~~~g~~v~ 34 (249)
T PRK12825 4 LMGRVALVTGAARGLGRAIALRLARAGADVV 34 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCeEE
Confidence 45688999987643 6788888999998863
No 434
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=40.59 E-value=2.3e+02 Score=24.06 Aligned_cols=85 Identities=11% Similarity=-0.011 Sum_probs=48.7
Q ss_pred CCCCCeEEEeCC---CCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccE--EEEeCHHHHHHHHHHH
Q 026235 47 SNSNPKVVVTRE---RGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDW--IIITSPEAGSVFLEAW 121 (241)
Q Consensus 47 ~l~g~~VLitR~---~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~--IiFTS~~aV~~f~~~l 121 (241)
.+.|+++|||.. ..-...+++.|.+.|+++... ++.. .+.+.+.+....++.... .=+++..+++.+++.+
T Consensus 3 ~l~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 78 (260)
T PRK06997 3 FLAGKRILITGLLSNRSIAYGIAKACKREGAELAFT--YVGD--RFKDRITEFAAEFGSDLVFPCDVASDEQIDALFASL 78 (260)
T ss_pred ccCCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEE--ccch--HHHHHHHHHHHhcCCcceeeccCCCHHHHHHHHHHH
Confidence 367899999994 344788999999999998643 1111 112223332222222111 1258889999988877
Q ss_pred Hhc-CCCCcEEEEeC
Q 026235 122 KEA-GTPNVRIGVVG 135 (241)
Q Consensus 122 ~~~-~~~~~~i~aIG 135 (241)
.+. +.-+.-|.+.|
T Consensus 79 ~~~~g~iD~lvnnAG 93 (260)
T PRK06997 79 GQHWDGLDGLVHSIG 93 (260)
T ss_pred HHHhCCCcEEEEccc
Confidence 543 32234444444
No 435
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=40.56 E-value=1.8e+02 Score=27.05 Aligned_cols=132 Identities=16% Similarity=0.141 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCcEE-EeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEE-eC-HHHH
Q 026235 63 GKLIKALAKHRIDCL-ELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGV-VG-AGTA 139 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~-~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~a-IG-~~Ta 139 (241)
.++.+.|++.|+++. .+|-..+.... ....-..++-.++.+-...-.+-++.+.+-..+-. +| ..|.
T Consensus 168 ~elk~lL~~~Gi~v~~~lpd~~~~e~~----------~~~~~~~~~~~~~~~~~~A~~Le~~~GiP~~~~~~PiGi~~T~ 237 (407)
T TIGR01279 168 DQLRLELKQLGIPVVGFLPASHFTELP----------VIGPGTVVAPLQPYLSDTATTLRRERGAKVLSAPFPFGPDGTR 237 (407)
T ss_pred HHHHHHHHHcCCeEEEEeCCCCcchhh----------hcCCCeEEEEechHHHHHHHHHHHHhCCccccCCCCcCHHHHH
Q ss_pred HHHHHhhhccCCCCcee-ecCCCCCHHHHHHHhhhCCCCccEEEEEccCCCchhHHHHHHhCCCeeeEe
Q 026235 140 SIFEEVIQSSKCSLDVA-FSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRL 207 (241)
Q Consensus 140 ~~L~~~~~~~~~Gi~~~-~~p~~~t~e~L~~~l~~~~~~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~~ 207 (241)
+.|++. ..++|..+. +..+..-...-++...... .|+++++..+..-.-.+...|.+.|.++..+
T Consensus 238 ~~l~~l--a~~~g~~~~~~~~e~~~~~~~l~~~~~~l-~Gkrv~i~gd~~~~~~l~~~L~elGm~~v~~ 303 (407)
T TIGR01279 238 RFLEAI--AAEFGIEVDKLSEREAQAWRALEPHTQLL-RGKKIFFFGDNLLELPLARFLKRCGMEVVEC 303 (407)
T ss_pred HHHHHH--HHHhCcCHHHHHHHHHHHHHHHHHHHHhc-CCCEEEEECCchHHHHHHHHHHHCCCEEEEe
No 436
>cd06328 PBP1_SBP_like_2 Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=40.52 E-value=2.4e+02 Score=24.79 Aligned_cols=131 Identities=15% Similarity=0.047 Sum_probs=65.0
Q ss_pred HHHHHhcCCCccEEEE-eCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCC-CCCHHHHHHH
Q 026235 93 LSSVLNADTIFDWIII-TSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPS-KATGKILASE 170 (241)
Q Consensus 93 l~~~l~~l~~~d~IiF-TS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~-~~t~e~L~~~ 170 (241)
.++.+. -.+.+.|+= .+..........+.+. ++++++.+ .++..+...- ...+-+. +.+. ......+...
T Consensus 60 ~~~li~-~~~V~avvG~~~S~~~~a~~~~~~~~---~ip~i~~~-~~~~~l~~~~-~~~~~f~--~~~~~~~~~~~~~~~ 131 (333)
T cd06328 60 ARELIG-DDGVDILVGSTSSGVALAVLPVAEEN---KKILIVEP-AAADSITGKN-WNRYTFR--TGRNSSQDAIAAAAA 131 (333)
T ss_pred HHHHHH-hcCCeEEEccCCcHHHHHHHHHHHHh---CCcEEecC-CCCchhhccC-CCCcEEE--ecCChHHHHHHHHHH
Confidence 444442 246777762 2333344455555553 35555433 3334454330 0001122 1121 2233444555
Q ss_pred hhhCCCCccEEEEEccCCC-----chhHHHHHHhCCCeeeEeeeeeeecCCCChHHHHHHc-CCCCEEEEE
Q 026235 171 LPKNGKKKCTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA-LSIPVVAVA 235 (241)
Q Consensus 171 l~~~~~~~~~iL~~~g~~~-----~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~l-~~id~IvFt 235 (241)
+.+. .+++.++..+.. ...+.+.|+++|.+|.....|.. ...+....+.+.. .++|+|++.
T Consensus 132 ~~~~---~~~v~~i~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~-~~~d~~~~v~~l~~~~pd~V~~~ 198 (333)
T cd06328 132 LGKP---GKKIATLAQDYAFGRDGVAAFKAALEKLGAAIVTEEYAPT-DTTDFTPYAQRLLDALKKVLFVI 198 (333)
T ss_pred HHhc---CCeEEEEecCccccHHHHHHHHHHHHhCCCEEeeeeeCCC-CCcchHHHHHHHHhcCCCEEEEE
Confidence 5543 367666644432 35788899999999887766654 2222233333222 578998765
No 437
>PRK12359 flavodoxin FldB; Provisional
Probab=40.51 E-value=1.4e+02 Score=24.39 Aligned_cols=74 Identities=9% Similarity=0.083 Sum_probs=0.0
Q ss_pred EEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHH--------HHHHHHHHHHhc
Q 026235 53 VVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE--------AGSVFLEAWKEA 124 (241)
Q Consensus 53 VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~--------aV~~f~~~l~~~ 124 (241)
|+..-.....+.+++.+++. +....+.+..+...... .+..||.|||-+|. ....|+..+.+.
T Consensus 5 I~Y~S~TGNTe~vAe~I~~~-lg~~~v~v~~i~~~~~~--------~l~~yD~iIlG~pTw~~Gel~~d~~~~~~~l~~~ 75 (172)
T PRK12359 5 LFYGSSTCYTEMAAEKIRDI-IGEELVDLHNLKDDPPK--------LMEQYDVLILGIPTWDFGEIQEDWEAVWDQLDDL 75 (172)
T ss_pred EEEECCCCHHHHHHHHHHHH-hCCCeEEEEEcccCChh--------HHccCCEEEEEecccCCCcCcHHHHHHHHHHhhC
Q ss_pred CCCCcEEEEeC
Q 026235 125 GTPNVRIGVVG 135 (241)
Q Consensus 125 ~~~~~~i~aIG 135 (241)
.+.+++++..|
T Consensus 76 dl~gK~vAlFG 86 (172)
T PRK12359 76 NLEGKIVALYG 86 (172)
T ss_pred CCCCCEEEEEe
No 438
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=40.43 E-value=3.1e+02 Score=25.60 Aligned_cols=64 Identities=25% Similarity=0.152 Sum_probs=38.4
Q ss_pred HhhhCCCCccEEEEEccCCCchhHHHHHHhCCCeeeEeeeeeeecCCCChHHHHHHc---CCCCEEEEE
Q 026235 170 ELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA---LSIPVVAVA 235 (241)
Q Consensus 170 ~l~~~~~~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~l---~~id~IvFt 235 (241)
.+.+...+|.++|++....=..-+.+.++..|.+|..+.+=--.+.+ .+++.+.+ ..+++|.++
T Consensus 72 av~sl~~pgdkVLv~~nG~FG~R~~~ia~~~g~~v~~~~~~wg~~v~--p~~v~~~L~~~~~~~~V~~v 138 (383)
T COG0075 72 AVASLVEPGDKVLVVVNGKFGERFAEIAERYGAEVVVLEVEWGEAVD--PEEVEEALDKDPDIKAVAVV 138 (383)
T ss_pred HHHhccCCCCeEEEEeCChHHHHHHHHHHHhCCceEEEeCCCCCCCC--HHHHHHHHhcCCCccEEEEE
Confidence 33444456788888877666677888888888877665443221111 23444444 356677665
No 439
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=40.37 E-value=62 Score=23.79 Aligned_cols=48 Identities=15% Similarity=0.131 Sum_probs=33.1
Q ss_pred CCHHHHHHHhhhCCCCccEEEEEccCCCc--hhHHHHHHhCCCeeeEeeeeee
Q 026235 162 ATGKILASELPKNGKKKCTVLYPASAKAS--NEIEEGLSNRGFEVVRLNTYTT 212 (241)
Q Consensus 162 ~t~e~L~~~l~~~~~~~~~iL~~~g~~~~--~~L~~~L~~~G~~V~~~~vY~~ 212 (241)
+.+.+.++.|.+. |+++.++.-+..+ ..+.+.|+..|+++..=.++..
T Consensus 17 pga~e~l~~L~~~---g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~~~i~ts 66 (101)
T PF13344_consen 17 PGAVEALDALRER---GKPVVFLTNNSSRSREEYAKKLKKLGIPVDEDEIITS 66 (101)
T ss_dssp TTHHHHHHHHHHT---TSEEEEEES-SSS-HHHHHHHHHHTTTT--GGGEEEH
T ss_pred cCHHHHHHHHHHc---CCCEEEEeCCCCCCHHHHHHHHHhcCcCCCcCEEECh
Confidence 3556677777764 5799999877544 5899999999999876655543
No 440
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=40.29 E-value=3.1e+02 Score=25.87 Aligned_cols=139 Identities=13% Similarity=0.079 Sum_probs=74.3
Q ss_pred CChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhc-CCCCcEEEEeCHH-
Q 026235 60 GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA-GTPNVRIGVVGAG- 137 (241)
Q Consensus 60 ~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~-~~~~~~i~aIG~~- 137 (241)
...+++.+.|++.|+++.... ......++ +..++....-|..++.......+.+++. +.+-..+--+|..
T Consensus 204 ~d~~el~~lL~~~Gl~v~~~~----~~~~t~ee----i~~~~~A~lniv~~~~~~~~~A~~L~er~GiP~~~~~p~G~~~ 275 (443)
T TIGR01862 204 GDAWVMRIYLEEMGIQVVATF----TGDGTYDE----IRLMHKAKLNLVHCARSANYIANELEERYGIPWMKIDFFGFTY 275 (443)
T ss_pred ccHHHHHHHHHHcCCeEEEEE----CCCCCHHH----HHhcccCCEEEEEChHHHHHHHHHHHHHhCCCeEecccCCHHH
Confidence 355799999999999987421 11112232 3345666676666766656666666653 4442222235644
Q ss_pred HHHHHHHhhhccCCCCcee---ecCCCCCHHHHHHHhhhC--CCCccEEEEEccCCCchhHHH-HHHhCCCeeeEeeee
Q 026235 138 TASIFEEVIQSSKCSLDVA---FSPSKATGKILASELPKN--GKKKCTVLYPASAKASNEIEE-GLSNRGFEVVRLNTY 210 (241)
Q Consensus 138 Ta~~L~~~~~~~~~Gi~~~---~~p~~~t~e~L~~~l~~~--~~~~~~iL~~~g~~~~~~L~~-~L~~~G~~V~~~~vY 210 (241)
|.+.|++. ..++|+... ++++ ..+...+.+... ...|+++.+.-+....-.+.. .|.+.|.++..+..+
T Consensus 276 t~~~l~~l--a~~~gi~~~~e~~i~~--~~~~~~~~l~~~~~~l~gkrvai~~~~~~~~~~~~~ll~elGm~v~~~~~~ 350 (443)
T TIGR01862 276 TAESLRAI--AAFFGIEKRAEEVIAE--EKAKWKPELDYYKERLQGKRVCLYIGGSRLWHWIGSAEEDLGMEVVAVGYE 350 (443)
T ss_pred HHHHHHHH--HHHhCCcHHHHHHHHH--HHHHHHHHHHHHHHHhcCCeEEEECCchhHHHHHHHHHHHCCCEEEEeccc
Confidence 55556654 222364321 0110 001112222211 135788888655443335666 888999999888555
No 441
>PF10678 DUF2492: Protein of unknown function (DUF2492); InterPro: IPR019620 This entry describes a family of small cytosolic proteins, about 80 amino acids in length, in which the eight invariant residues include three His residues and two Cys residues. Two pairs of these invariant residues occur in motifs HxH (where x is A or G) and CxH, both of which suggest metal-binding activity. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulphatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulphur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulphatase/maturase systems.
Probab=40.25 E-value=74 Score=22.80 Aligned_cols=41 Identities=20% Similarity=0.202 Sum_probs=30.4
Q ss_pred CCCCHHHHHHHhhhCCCCccEEEEEccCCCc--hhHHHHHHhCC
Q 026235 160 SKATGKILASELPKNGKKKCTVLYPASAKAS--NEIEEGLSNRG 201 (241)
Q Consensus 160 ~~~t~e~L~~~l~~~~~~~~~iL~~~g~~~~--~~L~~~L~~~G 201 (241)
..++-++|.++|.+....+.|+ +-|+..+- +.|.+.|.++|
T Consensus 18 ~~~t~~~L~~ai~~~FG~~arF-hTCSae~m~a~eLv~FL~~rg 60 (78)
T PF10678_consen 18 NPYTKEELKAAIIEKFGEDARF-HTCSAEGMTADELVDFLEERG 60 (78)
T ss_pred CCcCHHHHHHHHHHHhCCCceE-EecCCCCCCHHHHHHHHHHcC
Confidence 4568888988888776666677 56665543 67899998888
No 442
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=40.25 E-value=2e+02 Score=23.79 Aligned_cols=32 Identities=25% Similarity=0.094 Sum_probs=23.6
Q ss_pred CCCCCeEEEeCCCC-ChHHHHHHHHHCCCcEEE
Q 026235 47 SNSNPKVVVTRERG-KNGKLIKALAKHRIDCLE 78 (241)
Q Consensus 47 ~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~ 78 (241)
++++++||||.... -...+.+.|.++|+++..
T Consensus 3 ~~~~~~vlitGasg~iG~~l~~~l~~~g~~v~~ 35 (252)
T PRK06077 3 SLKDKVVVVTGSGRGIGRAIAVRLAKEGSLVVV 35 (252)
T ss_pred CCCCcEEEEeCCCChHHHHHHHHHHHCCCEEEE
Confidence 35678899998765 366788888888887653
No 443
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=40.15 E-value=1.1e+02 Score=25.25 Aligned_cols=8 Identities=38% Similarity=0.530 Sum_probs=3.2
Q ss_pred HHHHHhCC
Q 026235 194 EEGLSNRG 201 (241)
Q Consensus 194 ~~~L~~~G 201 (241)
.+.|.++|
T Consensus 106 ~~~l~~~g 113 (259)
T cd01542 106 GEYLAQQG 113 (259)
T ss_pred HHHHHHcC
Confidence 33444444
No 444
>PRK09701 D-allose transporter subunit; Provisional
Probab=40.09 E-value=1.7e+02 Score=25.62 Aligned_cols=45 Identities=16% Similarity=0.068 Sum_probs=30.0
Q ss_pred HHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCCC-CcEEEEeCHH
Q 026235 93 LSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTP-NVRIGVVGAG 137 (241)
Q Consensus 93 l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~-~~~i~aIG~~ 137 (241)
+.+.+..-.++|+|+..+-.......+.+.+.+.+ ++.+++++..
T Consensus 207 ~~~ll~~~~~~~~I~~~~d~~A~g~~~al~~~G~~~dv~vvg~d~~ 252 (311)
T PRK09701 207 ATNVLQRNPNIKAIYCANDTMAMGVAQAVANAGKTGKVLVVGTDGI 252 (311)
T ss_pred HHHHHHhCCCCCEEEECCcchHHHHHHHHHHcCCCCCEEEEEeCCC
Confidence 34444433467888888777777777777776663 5677777664
No 445
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=40.08 E-value=1.7e+02 Score=24.19 Aligned_cols=84 Identities=12% Similarity=0.051 Sum_probs=47.5
Q ss_pred CCeEEEeCCCCC-------hHHHHHHHHHCCCcEEEeceEEEeeCCCc----hHHHHHHhcCCCccEEEEeCHHHHHHHH
Q 026235 50 NPKVVVTRERGK-------NGKLIKALAKHRIDCLELPLIQHAQGPDT----DRLSSVLNADTIFDWIIITSPEAGSVFL 118 (241)
Q Consensus 50 g~~VLitR~~~~-------~~~l~~~L~~~G~~v~~~P~~~~~~~~~~----~~l~~~l~~l~~~d~IiFTS~~aV~~f~ 118 (241)
.++|++..+... ..-+.+.+++.|.++... . ....+. ..+.+.+..-.+.|+|+.++........
T Consensus 115 ~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~a~~~~ 190 (266)
T cd06278 115 CRRIAFIGGPADTSTSRERERGFRDALAAAGVPVVVE---E-AGDYSYEGGYEAARRLLASRPRPDAIFCANDLLAIGVM 190 (266)
T ss_pred CceEEEEcCCCcccchHHHHHHHHHHHHHcCCChhhh---c-cCCCCHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHH
Confidence 356777654322 234566677777663211 1 111111 2344555433568999988877777777
Q ss_pred HHHHhc-CC---CCcEEEEeCHH
Q 026235 119 EAWKEA-GT---PNVRIGVVGAG 137 (241)
Q Consensus 119 ~~l~~~-~~---~~~~i~aIG~~ 137 (241)
+.+.+. +. .++.+++++..
T Consensus 191 ~~l~~~~~~~~p~di~i~~~d~~ 213 (266)
T cd06278 191 DAARQEGGLRVPEDVSVIGFDDI 213 (266)
T ss_pred HHHHHhcCCCCccceEEEEeCCh
Confidence 777764 33 36777887654
No 446
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=40.06 E-value=2.8e+02 Score=24.96 Aligned_cols=46 Identities=15% Similarity=-0.079 Sum_probs=21.0
Q ss_pred CHHHHHHHhhhCCCCccEEEEEccCCCchhHHHHHHhCCCeeeEeeee
Q 026235 163 TGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTY 210 (241)
Q Consensus 163 t~e~L~~~l~~~~~~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~~~vY 210 (241)
+.+++.-.+......|.+|+++... -+......+..|+++..+.+.
T Consensus 102 ~~~~i~~~~~~~~~~gd~Vl~~~P~--y~~~~~~~~~~g~~~~~v~~~ 147 (385)
T PRK09276 102 SKEGIAHIPLAFVNPGDVVLVPDPG--YPVYKIGTIFAGGEPYFMPLK 147 (385)
T ss_pred cHHHHHHHHHHhCCCCCEEEEcCCC--CcChHHHHHHcCCEEEEEecC
Confidence 3444433333333345566665442 122334444556666655543
No 447
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=40.06 E-value=80 Score=28.96 Aligned_cols=67 Identities=15% Similarity=0.141 Sum_probs=38.6
Q ss_pred CCHHHHHHHhhhCCCCccEEEEEccCCC-----chhHHHHHHhCCCeeeEeeeeeeecCCCChH---HHHHHc--CCCCE
Q 026235 162 ATGKILASELPKNGKKKCTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQ---TVLKQA--LSIPV 231 (241)
Q Consensus 162 ~t~e~L~~~l~~~~~~~~~iL~~~g~~~-----~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~---~~~~~l--~~id~ 231 (241)
...+.+.+.+.+.. .+|+|++++... .+.+.+.|++.|+++. +|.-.......+ +..+.. .++|+
T Consensus 9 g~~~~l~~~~~~~~--~~r~livt~~~~~~~g~~~~v~~~L~~~gi~~~---~~~~v~~~p~~~~v~~~~~~~~~~~~D~ 83 (375)
T cd08194 9 GAVDETGAVLADLG--GKRPLIVTDKVMVKLGLVDKLTDSLKKEGIESA---IFDDVVSEPTDESVEEGVKLAKEGGCDV 83 (375)
T ss_pred CHHHHHHHHHHHcC--CCeEEEEcCcchhhcchHHHHHHHHHHCCCeEE---EECCCCCCcCHHHHHHHHHHHHhcCCCE
Confidence 34455666665442 368998887542 2457889988887653 444333332232 222222 57888
Q ss_pred EE
Q 026235 232 VA 233 (241)
Q Consensus 232 Iv 233 (241)
|+
T Consensus 84 II 85 (375)
T cd08194 84 II 85 (375)
T ss_pred EE
Confidence 77
No 448
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=40.05 E-value=1.3e+02 Score=24.94 Aligned_cols=74 Identities=16% Similarity=0.067 Sum_probs=42.3
Q ss_pred HHHHHHHHCCCcEEEeceEEEeeCCC--chHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCC---CCcEEEEeCHH
Q 026235 64 KLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGAG 137 (241)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~--~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~---~~~~i~aIG~~ 137 (241)
-+.+.++++|.+......+......+ .+.+.+.+.....+|+|+..+-.....+...+.+.++ +++.+++++..
T Consensus 141 gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vp~~i~iig~d~~ 219 (268)
T cd06271 141 GYRRALAEAGLPLDPALIVSGDMTEEGGYAAAAELLALPDRPTAIVCSSELMALGVLAALAEAGLRPGRDVSVVGFDDS 219 (268)
T ss_pred HHHHHHHHhCCCCCCceEEeCCCChHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHhCCCCCcceeEEEecCc
Confidence 35567777776642222222111101 1234455533345889998887777677777877765 36777777754
No 449
>PRK07890 short chain dehydrogenase; Provisional
Probab=40.00 E-value=1.6e+02 Score=24.51 Aligned_cols=32 Identities=19% Similarity=0.039 Sum_probs=22.4
Q ss_pred CCCCeEEEeCCCC-ChHHHHHHHHHCCCcEEEe
Q 026235 48 NSNPKVVVTRERG-KNGKLIKALAKHRIDCLEL 79 (241)
Q Consensus 48 l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~ 79 (241)
+.+++||||.... -...+++.|.++|++|..+
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~ 35 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVVLA 35 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEE
Confidence 4578888887754 3667777788888766543
No 450
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=39.92 E-value=87 Score=28.74 Aligned_cols=67 Identities=15% Similarity=0.110 Sum_probs=39.4
Q ss_pred CCHHHHHHHhhhCCCCccEEEEEccCCC-----chhHHHHHHhCCCeeeEeeeeeeecCCCChHHH---HHHc--CCCCE
Q 026235 162 ATGKILASELPKNGKKKCTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTV---LKQA--LSIPV 231 (241)
Q Consensus 162 ~t~e~L~~~l~~~~~~~~~iL~~~g~~~-----~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~---~~~l--~~id~ 231 (241)
...+.+.+.+.+.. .+++|++++... .+.+.+.|++.|+++ .+|.-.......+.+ .+.. .++|+
T Consensus 14 g~l~~l~~~l~~~g--~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~---~~f~~v~~~p~~~~v~~~~~~~~~~~~D~ 88 (377)
T cd08176 14 GAIKEIGDELKNLG--FKKALIVTDKGLVKIGVVEKVTDVLDEAGIDY---VIYDGVKPNPTITNVKDGLAVFKKEGCDF 88 (377)
T ss_pred CHHHHHHHHHHHhC--CCeEEEECCchHhhcCcHHHHHHHHHHcCCeE---EEeCCCCCCCCHHHHHHHHHHHHhcCCCE
Confidence 34455666665542 268999987643 346888998888764 456544333323322 2222 47898
Q ss_pred EE
Q 026235 232 VA 233 (241)
Q Consensus 232 Iv 233 (241)
|+
T Consensus 89 II 90 (377)
T cd08176 89 II 90 (377)
T ss_pred EE
Confidence 87
No 451
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.89 E-value=95 Score=27.76 Aligned_cols=55 Identities=13% Similarity=-0.052 Sum_probs=38.3
Q ss_pred CCCCCCeEEEe-CCCCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeC
Q 026235 46 ASNSNPKVVVT-RERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS 110 (241)
Q Consensus 46 ~~l~g~~VLit-R~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS 110 (241)
-++.|++|++. |+..-...++..|.++|++|..+- .....+.+.+ ...|.||-..
T Consensus 153 i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~h-------s~t~~l~~~~---~~ADIvV~Av 208 (285)
T PRK14191 153 IEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCH-------ILTKDLSFYT---QNADIVCVGV 208 (285)
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEe-------CCcHHHHHHH---HhCCEEEEec
Confidence 47889999888 554678899999999999987541 1223344433 5678877655
No 452
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=39.89 E-value=43 Score=28.11 Aligned_cols=51 Identities=16% Similarity=0.044 Sum_probs=33.3
Q ss_pred hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcC---CCccEEEEeCHHHH
Q 026235 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD---TIFDWIIITSPEAG 114 (241)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l---~~~d~IiFTS~~aV 114 (241)
...+.+.|++.|++...+ .+.+.+ ++.+.+.+.+... ..+|.||+|-..++
T Consensus 25 g~~L~~~L~~~G~~g~~v-~~~iVp-Dd~~~I~~aL~~a~~~~~~DlIITTGGtg~ 78 (193)
T PRK09417 25 IPALEEWLASALTSPFEI-ETRLIP-DEQDLIEQTLIELVDEMGCDLVLTTGGTGP 78 (193)
T ss_pred HHHHHHHHHHcCCCCceE-EEEECC-CCHHHHHHHHHHHhhcCCCCEEEECCCCCC
Confidence 457888999998765443 334443 3455666666543 36999998876554
No 453
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=39.81 E-value=1.1e+02 Score=25.91 Aligned_cols=54 Identities=15% Similarity=0.127 Sum_probs=37.9
Q ss_pred HHHHHHHhhhCCCC--ccEEEEEccCCCc--h--hHHHHHHhCCCeeeEeeeeeeecCCC
Q 026235 164 GKILASELPKNGKK--KCTVLYPASAKAS--N--EIEEGLSNRGFEVVRLNTYTTEPVHH 217 (241)
Q Consensus 164 ~e~L~~~l~~~~~~--~~~iL~~~g~~~~--~--~L~~~L~~~G~~V~~~~vY~~~~~~~ 217 (241)
..++.+.+.+..+. ..+|+++||.+.+ + .....|...|+.|+.+.+........
T Consensus 33 G~aVa~~i~~~~~~~~~~~v~vlcG~GnNGGDG~VaAR~L~~~G~~V~v~~~~~~~~~~~ 92 (203)
T COG0062 33 GLAVARAILREYPLGRARRVLVLCGPGNNGGDGLVAARHLKAAGYAVTVLLLGDPKKLKT 92 (203)
T ss_pred HHHHHHHHHHHcCcccCCEEEEEECCCCccHHHHHHHHHHHhCCCceEEEEeCCCCCccH
Confidence 45667777665544 4589999996544 2 46678999998888887776665543
No 454
>cd00853 NifX NifX belongs to a family of iron-molybdenum cluster-binding proteins that includes NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. The protein is part of the nitrogen fixation gene cluster in nitrogen-fixing bacteria and has sequence similarity to other members of the cluster.
Probab=39.71 E-value=48 Score=24.25 Aligned_cols=34 Identities=18% Similarity=0.178 Sum_probs=24.2
Q ss_pred EEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHh
Q 026235 132 GVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASEL 171 (241)
Q Consensus 132 ~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l 171 (241)
.-||+...+.|++. |+++...+...+.++.++.+
T Consensus 68 ~~iG~~a~~~L~~~------GI~v~~~~~~~~v~eal~~~ 101 (102)
T cd00853 68 AAIGGPAAARLVRA------GIHPIKVPEGEPIAELLEEL 101 (102)
T ss_pred hhcChhHHHHHHHc------CCEEEEcCCCCcHHHHHHhh
Confidence 44999999999999 99985444434556555443
No 455
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=39.58 E-value=83 Score=26.50 Aligned_cols=50 Identities=18% Similarity=0.152 Sum_probs=31.1
Q ss_pred HHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCCC-CcEEEEeCHHHHHHHH
Q 026235 93 LSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTP-NVRIGVVGAGTASIFE 143 (241)
Q Consensus 93 l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~-~~~i~aIG~~Ta~~L~ 143 (241)
+.+.|....+.++|+..+-.......+.+++.+.. ++.+++. ..+.+.++
T Consensus 176 ~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~~~~~ivg~-d~~~~~~~ 226 (274)
T cd06311 176 MQDLLTKFPKIDAVWAHDDDMAVGVLAAIKQAGRTDIKFVVGG-AGSKDMIK 226 (274)
T ss_pred HHHHHHhCCCcCEEEECCCcHHHHHHHHHHHcCCCCCceEEEe-CCCHHHHH
Confidence 44455444568898888877777777888777764 4455442 33445443
No 456
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=39.37 E-value=74 Score=23.50 Aligned_cols=14 Identities=29% Similarity=0.256 Sum_probs=6.9
Q ss_pred hHHHHHHhCCCeee
Q 026235 192 EIEEGLSNRGFEVV 205 (241)
Q Consensus 192 ~L~~~L~~~G~~V~ 205 (241)
.+...|++.|++|.
T Consensus 19 ~la~~l~~~G~~v~ 32 (121)
T PF02310_consen 19 YLAAYLRKAGHEVD 32 (121)
T ss_dssp HHHHHHHHTTBEEE
T ss_pred HHHHHHHHCCCeEE
Confidence 44455555555444
No 457
>TIGR01141 hisC histidinol-phosphate aminotransferase. Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.
Probab=39.19 E-value=2.7e+02 Score=24.51 Aligned_cols=95 Identities=16% Similarity=0.094 Sum_probs=46.6
Q ss_pred CHHHHHHHHHhhhccCCCCcee-ecCCCCCHHHHHHHhhhCCCCccEEEEEccCCCchhHHHHHHhCCCeeeEeeeeeee
Q 026235 135 GAGTASIFEEVIQSSKCSLDVA-FSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTE 213 (241)
Q Consensus 135 G~~Ta~~L~~~~~~~~~Gi~~~-~~p~~~t~e~L~~~l~~~~~~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~ 213 (241)
|+...+++.+++ |..++ +.......+++.-.+.....++.+|+++... -+.....++..|+++..+.+...
T Consensus 56 ~~~lr~~ia~~~-----~~~~~~i~~~~G~~~~l~~~~~~l~~~gd~v~~~~p~--y~~~~~~~~~~g~~~~~~~~~~~- 127 (346)
T TIGR01141 56 PAELKQALADYY-----GVDPEQILLGNGSDEIIELLIRAFLEPGDAVLVPPPT--YSMYEISAKIHGAEVVKVPLDED- 127 (346)
T ss_pred HHHHHHHHHHHh-----CcChHHEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCC--HHHHHHHHHHcCCeEEEeccCCC-
Confidence 455556665553 54322 2222344455433333333345677776542 23444555667887777666433
Q ss_pred cCCCChHHHHHHc-CCCCEEEEECCc
Q 026235 214 PVHHVDQTVLKQA-LSIPVVAVASPS 238 (241)
Q Consensus 214 ~~~~~~~~~~~~l-~~id~IvFtSps 238 (241)
.. ...+++.+.+ .+..+|++++|+
T Consensus 128 ~~-~d~~~l~~~~~~~~~~v~l~~p~ 152 (346)
T TIGR01141 128 GQ-LDLEDILVAIDDKPKLVFLCSPN 152 (346)
T ss_pred CC-CCHHHHHHhcCCCCCEEEEeCCC
Confidence 11 1123333333 456677777664
No 458
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=39.17 E-value=52 Score=30.53 Aligned_cols=73 Identities=19% Similarity=0.221 Sum_probs=49.3
Q ss_pred CCCCeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEE--eeCCCchHHHHHHhcCCCccEEEEeCHH----------HHH
Q 026235 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQH--AQGPDTDRLSSVLNADTIFDWIIITSPE----------AGS 115 (241)
Q Consensus 48 l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~--~~~~~~~~l~~~l~~l~~~d~IiFTS~~----------aV~ 115 (241)
..|..||++.|. -.......+-.|+++..+|+... ....+.+.+.+.+. .+..+|+++||| ..+
T Consensus 111 ~pGDeVlip~P~--Y~~y~~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i~--~ktk~i~ln~P~NPTGav~~~~~l~ 186 (393)
T COG0436 111 NPGDEVLIPDPG--YPSYEAAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAIT--PKTKAIILNSPNNPTGAVYSKEELK 186 (393)
T ss_pred CCCCEEEEeCCC--CcCHHHHHHhcCCEEEEEeCCcCccCCcCCHHHHHhhcC--ccceEEEEeCCCCCcCcCCCHHHHH
Confidence 346668888886 34556667778999999998542 23345566777663 367899998775 456
Q ss_pred HHHHHHHhc
Q 026235 116 VFLEAWKEA 124 (241)
Q Consensus 116 ~f~~~l~~~ 124 (241)
.+.+.+.++
T Consensus 187 ~i~~~a~~~ 195 (393)
T COG0436 187 AIVELAREH 195 (393)
T ss_pred HHHHHHHHc
Confidence 666666654
No 459
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=39.01 E-value=87 Score=27.80 Aligned_cols=62 Identities=10% Similarity=0.039 Sum_probs=41.2
Q ss_pred CCCCeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCH
Q 026235 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP 111 (241)
Q Consensus 48 l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~ 111 (241)
..|.+|+++.+......+...++..|+++..+|+-.. ...+.+.+.+.+.+ .+.+.|+++++
T Consensus 72 ~~g~~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~~~~~l~~~i~~-~~~~~v~i~~~ 133 (356)
T cd06451 72 EPGDKVLVGVNGVFGDRWADMAERYGADVDVVEKPWG-EAVSPEEIAEALEQ-HDIKAVTLTHN 133 (356)
T ss_pred CCCCEEEEecCCchhHHHHHHHHHhCCCeEEeecCCC-CCCCHHHHHHHHhc-cCCCEEEEecc
Confidence 3588899987654333466778889999999886321 12245666666632 36678888776
No 460
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=38.84 E-value=39 Score=28.19 Aligned_cols=58 Identities=14% Similarity=0.184 Sum_probs=36.1
Q ss_pred HHHHHHHHHCCCcEEEeceEEE--eeCC-------------CchHHHHHHhcCCCccEEEEeCH-------HHHHHHHHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQH--AQGP-------------DTDRLSSVLNADTIFDWIIITSP-------EAGSVFLEA 120 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~--~~~~-------------~~~~l~~~l~~l~~~d~IiFTS~-------~aV~~f~~~ 120 (241)
+...+.+++.|+++..+-+-+. .+-. +.+.+...++.+.++|.|||-|| ...+.|++.
T Consensus 21 ~~~~~g~~~~G~E~~~i~v~~~~i~~c~~c~~c~~~~~c~~~dD~~~~i~~~l~~aD~iI~gsPvy~g~vsa~~K~fiDR 100 (207)
T COG0655 21 EAVLEGAEEAGAEVEIIRLPEKNIKPCTGCFACWKKKPCVIKDDDMNEIYEKLLEADGIIFGSPVYFGNVSAQMKAFIDR 100 (207)
T ss_pred HHHHHHHHHcCCEEEEEEecCCCcccchHHHhhhccCCCCCCcccHHHHHHHHHHCCEEEEeCCeecCCchHHHHHHHhh
Confidence 3445566778998887666654 2211 00123333444578999999997 567778776
No 461
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=38.79 E-value=23 Score=31.16 Aligned_cols=59 Identities=17% Similarity=0.237 Sum_probs=36.3
Q ss_pred CeEEEeCCCC-ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCH
Q 026235 51 PKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP 111 (241)
Q Consensus 51 ~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~ 111 (241)
|||||+...+ -+..+.+.|.+.|.++....--+ ..+.+.+.+.+.+.+ ..+|+||.+-+
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~~-~dl~d~~~~~~~~~~-~~pd~Vin~aa 60 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRSD-LDLTDPEAVAKLLEA-FKPDVVINCAA 60 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTTC-S-TTSHHHHHHHHHH-H--SEEEE---
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCchh-cCCCCHHHHHHHHHH-hCCCeEeccce
Confidence 6899999765 36788899988887776552111 112345666777643 46899999864
No 462
>PF08373 RAP: RAP domain; InterPro: IPR013584 The ~60-residue RAP (an acronym for RNA-binding domain abundant in Apicomplexans) domain is found in various proteins in eukaryotes. It is particularly abundant in apicomplexans and might mediate a range of cellular functions through its potential interactions with RNA []. The RAP domain consists of multiple blocks of charged and aromatics residues and is predicted to be composed of alpha helical and beta strand structures. Two predicted loop regions that are dominated by glycine and tryptophan residues are found before and after the central beta sheet []. Some proteins known to contain a RAP domain are listed below: Human hypothetical protein MGC5297, Mammalian FAST kinase domain-containing proteins (FASTKDs), Chlamydomonas reinhardtii chloroplastic trans-splicing factor Raa3.
Probab=38.77 E-value=22 Score=23.17 Aligned_cols=33 Identities=9% Similarity=0.104 Sum_probs=23.6
Q ss_pred HHHHHHHCCCcEEEeceEEEeeCCCchHHHHHH
Q 026235 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL 97 (241)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l 97 (241)
=.+.|+++|..|+.+|.++.....+.++-...|
T Consensus 23 k~r~L~~~G~~Vi~Ip~~eW~~l~~~~~k~~YL 55 (58)
T PF08373_consen 23 KHRHLKALGYKVISIPYYEWNKLKSREEKIEYL 55 (58)
T ss_pred HHHHHHHCCCEEEEecHHHHHhcCCHHHHHHHH
Confidence 345788999999999999988764444333343
No 463
>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. The function of the NMDA subtype receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer comprising two NR1 and two NR2 (A, B, C, and D) or NR3 (A and B) subunits
Probab=38.51 E-value=2.3e+02 Score=25.16 Aligned_cols=66 Identities=14% Similarity=0.072 Sum_probs=35.1
Q ss_pred hHHHHHHHHHCCCc--EEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCCC
Q 026235 62 NGKLIKALAKHRID--CLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTP 127 (241)
Q Consensus 62 ~~~l~~~L~~~G~~--v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~ 127 (241)
.+.+.+.+++.|.. +...-.+......+...+...++..+.--.|++.+......++..+.+.++.
T Consensus 153 ~~~l~~~l~~~g~~~~i~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~il~~a~~~g~~ 220 (362)
T cd06367 153 LDRVETTLEESFVGWEFQLVLTLDLSDDDGDARLLRQLKKLESRVILLYCSKEEAERIFEAAASLGLT 220 (362)
T ss_pred HHHHHHHHHhcccceeeeeeEEeccCCCcchHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 45677778888877 4332222221111233344444443332334556666777777777776653
No 464
>PLN03194 putative disease resistance protein; Provisional
Probab=38.40 E-value=1.3e+02 Score=25.19 Aligned_cols=85 Identities=13% Similarity=0.149 Sum_probs=50.5
Q ss_pred chhhhcCCCCCCcccceeccccccccCCCCCCCeEEEeCCCCC----hHHHHHHHHHCCCcEEEeceEEEeeCCC-chHH
Q 026235 19 SSRLRLNRPLPFQFSRIQASSDATSASASNSNPKVVVTRERGK----NGKLIKALAKHRIDCLELPLIQHAQGPD-TDRL 93 (241)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~VLitR~~~~----~~~l~~~L~~~G~~v~~~P~~~~~~~~~-~~~l 93 (241)
||--.||.|+|+.|-.-.. ....-.-+|-.|+.+. .+-|.+.|+..|+.+..-. -++..... ...+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~--------~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~-~el~~G~~i~~~L 74 (187)
T PLN03194 4 SSTAQLNNRLFLHYPSSSS--------SAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDN-KNMKPGDKLFDKI 74 (187)
T ss_pred hHHHHHhhhhhcccccCCC--------CCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcC-ccccCCCcHHHHH
Confidence 4566799999998854322 2222334555677654 4557778999999887643 23333332 2456
Q ss_pred HHHHhcCCCccEEEEeCHHH
Q 026235 94 SSVLNADTIFDWIIITSPEA 113 (241)
Q Consensus 94 ~~~l~~l~~~d~IiFTS~~a 113 (241)
.++|+ -..+-.+||+...+
T Consensus 75 ~~AIe-eSri~IvVfS~~Ya 93 (187)
T PLN03194 75 NSAIR-NCKVGVAVFSPRYC 93 (187)
T ss_pred HHHHH-hCeEEEEEECCCcc
Confidence 66663 35666666665333
No 465
>PF01321 Creatinase_N: Creatinase/Prolidase N-terminal domain; InterPro: IPR000587 Creatinase or creatine amidinohydrolase (3.5.3.3 from EC) catalyses the conversion of creatine and water to sarcosine and urea. The enzyme works as a homodimer, and is induced by choline chloride. Each monomer of creatinase has two clearly defined domains, a small N-terminal domain, and a large C-terminal domain. The structure of the C-terminal region represents the "pita-bread" fold. The fold contains both alpha helices and an anti-parallel beta sheet within two structurally similar domains that are thought to be derived from an ancient gene duplication. The active site, where conserved, is located between the two domains. The fold is common to methionine aminopeptidase (3.4.11.18 from EC), aminopeptidase P (3.4.11.9 from EC), prolidase (3.4.13.9 from EC), agropine synthase and creatinase (3.5.3.3 from EC). Though many of these peptidases require a divalent cation, creatinase is not a metal-dependent enzyme [, , ]. ; GO: 0016787 hydrolase activity; PDB: 1PV9_A 3CTZ_A 3IL0_B 3PN9_A 2HOW_A 1WN1_B 3I7M_A 1CHM_B 3QOC_D 1KP0_B ....
Probab=38.40 E-value=1.6e+02 Score=21.65 Aligned_cols=98 Identities=18% Similarity=0.108 Sum_probs=52.3
Q ss_pred HHHHHHhcCCCccEEEEeCHHHHHHHHHHH---HhcC------CCCcEEEEe-CHHHHHHHHH-hhhccCCCCceeecCC
Q 026235 92 RLSSVLNADTIFDWIIITSPEAGSVFLEAW---KEAG------TPNVRIGVV-GAGTASIFEE-VIQSSKCSLDVAFSPS 160 (241)
Q Consensus 92 ~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l---~~~~------~~~~~i~aI-G~~Ta~~L~~-~~~~~~~Gi~~~~~p~ 160 (241)
.+.+.++ ..++|++++|++..+.++...- .... .++..+++= +.......+. . +.++....+
T Consensus 4 rl~~~m~-~~gid~lll~~~~ni~YltG~~~~~~~~~~~l~i~~~~~~l~~~~~~~~~~~~~~~~------~~~v~~~~~ 76 (132)
T PF01321_consen 4 RLRAAMA-EAGIDALLLTSPENIRYLTGFRWQPGERPVLLVITADGAVLFVPKGEYERAAEESAP------DDEVVEYED 76 (132)
T ss_dssp HHHHHHH-HTT-SEEEEESHHHHHHHHS--ST-TSSEEEEEEESSSEEEEEEGGGHHHHHHHHTT------SSEEEEEST
T ss_pred HHHHHHH-HCCCCEEEEcChhhceEecCCCcCCCcceEEEEecccCcEEEeccccHHHHHHhhcC------CceEEEEec
Confidence 3455563 3679999999999999988762 2111 023333333 4554444444 3 444322211
Q ss_pred CCCHHHHHHHhhhCCCCccEEEEEccCCCchhHHHHHHh
Q 026235 161 KATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSN 199 (241)
Q Consensus 161 ~~t~e~L~~~l~~~~~~~~~iL~~~g~~~~~~L~~~L~~ 199 (241)
..+.+.+.+++....++++.+=... -.-..-+.|++
T Consensus 77 --~~~~~~~~l~~~~~~~~~igve~~~-~~~~~~~~l~~ 112 (132)
T PF01321_consen 77 --PYEAIAEALKKLGPEGKRIGVEPDS-LSAAEYQRLQE 112 (132)
T ss_dssp --HHHHHHHHHHHHTTTTSEEEEETTT-SBHHHHHHHHH
T ss_pred --ccchHHHHHHHhCCCCCEEEEcCCc-ChHHHHHHHHH
Confidence 3677888887775555677665443 23334444543
No 466
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=38.33 E-value=2.9e+02 Score=24.64 Aligned_cols=126 Identities=10% Similarity=0.003 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhcCCCCc---EEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEcc
Q 026235 110 SPEAGSVFLEAWKEAGTPNV---RIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPAS 186 (241)
Q Consensus 110 S~~aV~~f~~~l~~~~~~~~---~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~~~~~~iL~~~g 186 (241)
.+.+++++.++....+.++. ..--.+..+.+.+++. ...++|. -.+.....+.+++.-.+.....+|.+|++...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-la~~~g~-~~i~~~~g~t~al~~~l~~~~~~gd~Vl~~~~ 91 (361)
T cd06452 14 TPEARKALIEWGDGYSVCDFCRGRLDEIEKPPIKDFHHD-LAEFLGM-DEARVTPGAREGKFAVMHSLCEKGDWVVVDGL 91 (361)
T ss_pred CHHHHHHHHHHhcccCCccccccccccccCchHHHHHHH-HHHHcCC-ceEEEeCCHHHHHHHHHHHhcCCCCEEEEcCC
Q ss_pred CCCchhHHHHHHhCCCeeeEeeeeeeecCCCChHHHHHHcC--------CCCEEEEECCcc
Q 026235 187 AKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQAL--------SIPVVAVASPSA 239 (241)
Q Consensus 187 ~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~l~--------~id~IvFtSps~ 239 (241)
...... ..++..|+++..+.+-....-....+.+.+.+. +.+.|++++|..
T Consensus 92 ~~~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n 150 (361)
T cd06452 92 AHYTSY--VAAERAGLNVREVPNTGHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDG 150 (361)
T ss_pred cchHHH--HHHHhcCCEEEEEecCCCCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCC
No 467
>PF00633 HHH: Helix-hairpin-helix motif; InterPro: IPR000445 The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins [, , ]. The HhH motif is similar to, but distinct from, the HtH motif. Both of these motifs have two helices connected by a short turn. In the HtH motif the second helix binds to DNA with the helix in the major groove. This allows the contact between specific base and residues throughout the protein. In the HhH motif the second helix does not protrude from the surface of the protein and therefore cannot lie in the major groove of the DNA. Crystallographic studies suggest that the interaction of the HhH domain with DNA is mediated by amino acids located in the strongly conserved loop (L-P-G-V) and at the N-terminal end of the second helix []. This interaction could involve the formation of hydrogen bonds between protein backbone nitrogens and DNA phosphate groups []. The structural difference between the HtH and HhH domains is reflected at the functional level: whereas the HtH domain, found primarily in gene regulatory proteins, binds DNA in a sequence specific manner, the HhH domain is rather found in proteins involved in enzymatic activities and binds DNA with no sequence specificity []. The HhH domain of DisA, a bacterial checkpoint control protein, is a DNA-binding domain [].; GO: 0003677 DNA binding; PDB: 3C1Z_A 3C23_A 3C1Y_A 3C21_A 1Z00_A 2A1J_B 1KEA_A 1VRL_A 1RRQ_A 3G0Q_A ....
Probab=38.29 E-value=25 Score=20.27 Aligned_cols=11 Identities=27% Similarity=0.374 Sum_probs=8.3
Q ss_pred eCHHHHHHHHH
Q 026235 134 VGAGTASIFEE 144 (241)
Q Consensus 134 IG~~Ta~~L~~ 144 (241)
||++||+++.+
T Consensus 19 IG~~tA~~I~~ 29 (30)
T PF00633_consen 19 IGPKTANAILS 29 (30)
T ss_dssp -SHHHHHHHHH
T ss_pred cCHHHHHHHHh
Confidence 79999988765
No 468
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=38.29 E-value=3e+02 Score=24.77 Aligned_cols=58 Identities=12% Similarity=-0.024 Sum_probs=25.9
Q ss_pred CccEEEEEccCCCchhHHHHHHhCCCeeeEeeeeeeecCCCChHHHHHHc-CCCCEEEEECCc
Q 026235 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA-LSIPVVAVASPS 238 (241)
Q Consensus 177 ~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~l-~~id~IvFtSps 238 (241)
+|..|++... .-+.....++..|+++..+.+..... ...+++.+.+ .+.++|++++|.
T Consensus 111 ~gd~vli~~P--~y~~~~~~~~~~g~~~~~v~~~~~~~--~~~~~l~~~~~~~~~~v~l~~p~ 169 (371)
T PRK05166 111 PGDRVVTLYP--SFPLHEDYPTMMGARVERVTVTPDLG--FDLDALCAAVARAPRMLMFSNPS 169 (371)
T ss_pred CCCEEEEcCC--ChHHHHHHHHHcCCeEEEeecCCCCC--CCHHHHHHhhhcCCCEEEEeCCC
Confidence 4456665422 11233445556666666655532111 1122232222 345666666664
No 469
>PLN03026 histidinol-phosphate aminotransferase; Provisional
Probab=38.28 E-value=88 Score=28.51 Aligned_cols=60 Identities=15% Similarity=0.214 Sum_probs=38.4
Q ss_pred CCCeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHH
Q 026235 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE 112 (241)
Q Consensus 49 ~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~ 112 (241)
.|.+|+++.|.- ..+....+..|+++..+|+-. ....+.+.+.+.+. ..+.+.|++++|+
T Consensus 126 ~gd~Vlv~~P~y--~~y~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~~~-~~~~~~v~l~~P~ 185 (380)
T PLN03026 126 PGDKIIDCPPTF--GMYVFDAAVNGAEVIKVPRTP-DFSLDVPRIVEAVE-THKPKLLFLTSPN 185 (380)
T ss_pred CCCEEEEcCCCh--HHHHHHHHHcCCEEEEeecCC-CCCcCHHHHHHHHh-ccCCcEEEEeCCC
Confidence 567888888763 355566677899999888621 11123345555441 2467888888876
No 470
>PRK13566 anthranilate synthase; Provisional
Probab=38.21 E-value=2e+02 Score=29.27 Aligned_cols=93 Identities=13% Similarity=0.106 Sum_probs=56.3
Q ss_pred CCCCCCeEEEeCCCC-ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEe-CHHH-----HHHHH
Q 026235 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT-SPEA-----GSVFL 118 (241)
Q Consensus 46 ~~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFT-S~~a-----V~~f~ 118 (241)
.+..|++|++..-.. -...+.+.|++.|+++..++.... .+ .+ ....+|.||++ ++.. +..++
T Consensus 522 ~~~~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~~-----~~----~~-~~~~~DgVVLsgGpgsp~d~~~~~lI 591 (720)
T PRK13566 522 AVGEGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGFA-----EE----ML-DRVNPDLVVLSPGPGRPSDFDCKATI 591 (720)
T ss_pred CCCCCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCC-----hh----Hh-hhcCCCEEEECCCCCChhhCCcHHHH
Confidence 577889999997764 467899999999998877665431 11 12 23478998885 3322 23333
Q ss_pred HHHHhcCCCCcEEEEeCHHHHHHHHHhhhccCCCCceee
Q 026235 119 EAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAF 157 (241)
Q Consensus 119 ~~l~~~~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~ 157 (241)
..+.+ .+++++.|.-+- +.|-..+ |-++..
T Consensus 592 ~~a~~---~~iPILGIClG~-QlLa~al-----GG~V~~ 621 (720)
T PRK13566 592 DAALA---RNLPIFGVCLGL-QAIVEAF-----GGELGQ 621 (720)
T ss_pred HHHHH---CCCcEEEEehhH-HHHHHHc-----CCEEEE
Confidence 33322 357786666553 4443332 766543
No 471
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=38.14 E-value=1.3e+02 Score=28.68 Aligned_cols=114 Identities=11% Similarity=0.105 Sum_probs=63.2
Q ss_pred CCCCeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCC-chHHHHHHhc----CCCccEEEEeCHHHHHHHHHHHH
Q 026235 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPD-TDRLSSVLNA----DTIFDWIIITSPEAGSVFLEAWK 122 (241)
Q Consensus 48 l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~-~~~l~~~l~~----l~~~d~IiFTS~~aV~~f~~~l~ 122 (241)
++|||+.++......-.+.+.|.+.|.++..+- .... ... .+...+.+.. .+..+.++...++ ...+.+.+.
T Consensus 312 L~GKrvai~Gdp~~~i~LarfL~elGmevV~vg-t~~~-~~~~~~~d~~~l~~~~~~~~~~~~vive~~D-~~el~~~i~ 388 (457)
T CHL00073 312 VRGKSVFFMGDNLLEISLARFLIRCGMIVYEIG-IPYM-DKRYQAAELALLEDTCRKMNVPMPRIVEKPD-NYNQIQRIR 388 (457)
T ss_pred HCCCEEEEECCCcHHHHHHHHHHHCCCEEEEEE-eCCC-ChhhhHHHHHHHHHHhhhcCCCCcEEEeCCC-HHHHHHHHh
Confidence 689999999887888899999999999999871 1110 111 1111222322 2223456666654 444555555
Q ss_pred hcCCCCcEEEEeCHHHHHHHHHhhhccCCCCcee------ecCCC-C-CHHHHHHHhhh
Q 026235 123 EAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVA------FSPSK-A-TGKILASELPK 173 (241)
Q Consensus 123 ~~~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~------~~p~~-~-t~e~L~~~l~~ 173 (241)
+.. ..++.-|-..+.-|... |+... +.|-. | .+-.|++.+.+
T Consensus 389 ~~~---pDLlIgG~~~~~Pl~~~------G~p~~d~~~~~~~pi~Gy~ga~~L~e~~~~ 438 (457)
T CHL00073 389 ELQ---PDLAITGMAHANPLEAR------GINTKWSVEFTFAQIHGFTNARDVLELVTR 438 (457)
T ss_pred hCC---CCEEEccccccCchhhc------CCcceEecceEEEccccHhhHHHHHHHHHH
Confidence 432 22333333455566777 76553 33432 2 24556655543
No 472
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.09 E-value=3e+02 Score=24.71 Aligned_cols=159 Identities=13% Similarity=0.086 Sum_probs=82.6
Q ss_pred EEEeCCCCChHH----HHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHh---cCCCccEEEEeCH--HHHHHH--HHHH
Q 026235 53 VVVTRERGKNGK----LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN---ADTIFDWIIITSP--EAGSVF--LEAW 121 (241)
Q Consensus 53 VLitR~~~~~~~----l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~---~l~~~d~IiFTS~--~aV~~f--~~~l 121 (241)
+++....+.... -.+.+++.|+++..+-+-+.. ..+++.+.++ .....|.|+.--| ..++.. ++.+
T Consensus 36 ii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~---~~~el~~~I~~lN~D~~V~GIlvq~Plp~~id~~~i~~~I 112 (295)
T PRK14174 36 VIIVGEDPASQVYVRNKAKSCKEIGMNSTVIELPADT---TEEHLLKKIEDLNNDPDVHGILVQQPLPKQIDEFAVTLAI 112 (295)
T ss_pred EEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcC
Confidence 555555444333 344677789887765443221 2234444443 4467899998877 322211 1211
Q ss_pred H-hcCCCCcEEEEeCHHHHHHHHHhhhccCCCC-ceeecCCCCCHHHHHHHhhhCC--CCccEEEEE-ccCCCchhHHHH
Q 026235 122 K-EAGTPNVRIGVVGAGTASIFEEVIQSSKCSL-DVAFSPSKATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEEG 196 (241)
Q Consensus 122 ~-~~~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi-~~~~~p~~~t~e~L~~~l~~~~--~~~~~iL~~-~g~~~~~~L~~~ 196 (241)
. +...++..-.-.|.-- . |- +..+.| -|+.+.++.|..+. ..|++++++ ||+....-|...
T Consensus 113 ~p~KDVDGl~~~n~g~l~------~------~~~~~~~~P--cTp~ail~ll~~y~i~l~Gk~vvViGrS~iVG~Pla~l 178 (295)
T PRK14174 113 DPAKDVDGFHPENLGRLV------M------GHLDKCFVS--CTPYGILELLGRYNIETKGKHCVVVGRSNIVGKPMANL 178 (295)
T ss_pred CccccccccChhhHHHHh------c------CCCCCCcCC--CCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHH
Confidence 1 1112344433333321 1 32 122444 48899998888663 457887666 444444446666
Q ss_pred HHh----CCCeeeEeeeeeeecCCCChHHHHHHcCCCCEEEEEC
Q 026235 197 LSN----RGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVAS 236 (241)
Q Consensus 197 L~~----~G~~V~~~~vY~~~~~~~~~~~~~~~l~~id~IvFtS 236 (241)
|.+ +|++|..+.-... .+.+.+.+.|+++-.-
T Consensus 179 L~~~~~~~~atVt~~hs~t~--------~l~~~~~~ADIvI~Av 214 (295)
T PRK14174 179 MLQKLKESNCTVTICHSATK--------DIPSYTRQADILIAAI 214 (295)
T ss_pred HHhccccCCCEEEEEeCCch--------hHHHHHHhCCEEEEec
Confidence 655 6788776654321 1232335677776543
No 473
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=38.06 E-value=46 Score=26.14 Aligned_cols=49 Identities=22% Similarity=0.248 Sum_probs=30.9
Q ss_pred CCCchhHHHHHHhCCCeeeEeeeeeeecCCCChHHHH----HHcCCCCEEEEECCccC
Q 026235 187 AKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVL----KQALSIPVVAVASPSAV 240 (241)
Q Consensus 187 ~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~----~~l~~id~IvFtSps~v 240 (241)
+...+.|.+.|++.|+++... ...+.+ .+++. +.+...|.|+.|..+++
T Consensus 26 d~n~~~l~~~l~~~G~~v~~~---~~v~Dd--~~~i~~~l~~~~~~~DliIttGG~g~ 78 (144)
T TIGR00177 26 DSNGPLLAALLEEAGFNVSRL---GIVPDD--PEEIREILRKAVDEADVVLTTGGTGV 78 (144)
T ss_pred eCcHHHHHHHHHHCCCeEEEE---eecCCC--HHHHHHHHHHHHhCCCEEEECCCCCC
Confidence 456678999999999776553 222222 22222 22357899998877654
No 474
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=38.04 E-value=2.5e+02 Score=27.19 Aligned_cols=141 Identities=12% Similarity=0.077 Sum_probs=73.2
Q ss_pred CChHHHHHHHHHCCCcEEEeceEE------------Eee-CCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhc-C
Q 026235 60 GKNGKLIKALAKHRIDCLELPLIQ------------HAQ-GPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA-G 125 (241)
Q Consensus 60 ~~~~~l~~~L~~~G~~v~~~P~~~------------~~~-~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~-~ 125 (241)
..-.++.+.|+..|+++..+|=+. +-+ ....+++. .......-+..++..-....+.+++. +
T Consensus 234 gd~~eikrlL~~~Gi~~~~l~d~s~~~d~p~~g~~~~~~ggttleei~----~a~~A~~~ivl~~~~~~~~a~~l~~~~g 309 (515)
T TIGR01286 234 GNFREIKRILSLMGVGYTLLSDPEEVLDTPADGEFRMYAGGTTLEEMK----DAPNAEATVLLQPYTLRKTKEYIEKTWK 309 (515)
T ss_pred hhHHHHHHHHHHcCCCeEEccCccccccCCCCCCccccCCCCCHHHHH----HhhhCcEEEEEchhhhHHHHHHHHHHhC
Confidence 345889999999999999876221 111 11223333 34455555555665444455555432 3
Q ss_pred CCCcEE-EEeCH-HHHHHHHHhhhccCCCCceeecCCCCCH--HHHHHHhhhC--CCCccEEEEEccCCCchhHHHHHHh
Q 026235 126 TPNVRI-GVVGA-GTASIFEEVIQSSKCSLDVAFSPSKATG--KILASELPKN--GKKKCTVLYPASAKASNEIEEGLSN 199 (241)
Q Consensus 126 ~~~~~i-~aIG~-~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~--e~L~~~l~~~--~~~~~~iL~~~g~~~~~~L~~~L~~ 199 (241)
.+-..+ .=+|- .|.+.|++. +.++|..+ |+.... .-++++|... ...|+|+.+.....----+...|.+
T Consensus 310 ~p~~~~~~PiGi~~Td~fL~~l--a~~~g~~i---p~~i~~eR~rl~dam~d~~~~l~GKrvaI~gdpd~~~~l~~fL~E 384 (515)
T TIGR01286 310 QETPKLNIPLGVKGTDEFLMKV--SEISGQPI---PAELTKERGRLVDAMTDSHAWLHGKRFAIYGDPDFVMGLVRFVLE 384 (515)
T ss_pred CCcccCCCCccHHHHHHHHHHH--HHHHCCCC---CHHHHHHHHHHHHHHHHHHHHhcCceEEEECCHHHHHHHHHHHHH
Confidence 221111 12553 466666665 22335432 221111 1255555432 1357888777433222347778999
Q ss_pred CCCeeeEeee
Q 026235 200 RGFEVVRLNT 209 (241)
Q Consensus 200 ~G~~V~~~~v 209 (241)
.|.++..+.+
T Consensus 385 lGmepv~v~~ 394 (515)
T TIGR01286 385 LGCEPVHILC 394 (515)
T ss_pred CCCEEEEEEe
Confidence 9998755543
No 475
>PLN02240 UDP-glucose 4-epimerase
Probab=37.92 E-value=1.9e+02 Score=25.56 Aligned_cols=33 Identities=15% Similarity=0.129 Sum_probs=26.1
Q ss_pred CCCCCeEEEeCCCC-ChHHHHHHHHHCCCcEEEe
Q 026235 47 SNSNPKVVVTRERG-KNGKLIKALAKHRIDCLEL 79 (241)
Q Consensus 47 ~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~ 79 (241)
.+.+++||||.... -...+.+.|.+.|.+|..+
T Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~ 35 (352)
T PLN02240 2 SLMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVI 35 (352)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence 46789999998754 4678888898899888765
No 476
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=37.91 E-value=1.1e+02 Score=28.51 Aligned_cols=67 Identities=10% Similarity=0.056 Sum_probs=38.0
Q ss_pred CCHHHHHHHhhhCCCCccEEEEEccCC-----CchhHHHHHHhCCCeeeEeeeeeeecCCCChHHH---HHHc--CCCCE
Q 026235 162 ATGKILASELPKNGKKKCTVLYPASAK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTV---LKQA--LSIPV 231 (241)
Q Consensus 162 ~t~e~L~~~l~~~~~~~~~iL~~~g~~-----~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~---~~~l--~~id~ 231 (241)
...+.|.+.+.+.. .+++|+..+.. --+.+.+.|++.|+++. +|....+....+.+ .+.. .++|.
T Consensus 35 g~~~~l~~~~~~~g--~~~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~---~~~~v~~~P~~~~v~~~~~~~r~~~~D~ 109 (395)
T PRK15454 35 GAVSSCGQQAQTRG--LKHLFVMADSFLHQAGMTAGLTRSLAVKGIAMT---LWPCPVGEPCITDVCAAVAQLRESGCDG 109 (395)
T ss_pred CHHHHHHHHHHhcC--CCEEEEEcCcchhhCccHHHHHHHHHHcCCeEE---EECCCCCCcCHHHHHHHHHHHHhcCcCE
Confidence 34556666665542 26888886642 12568899999987654 45333333222222 2222 58888
Q ss_pred EE
Q 026235 232 VA 233 (241)
Q Consensus 232 Iv 233 (241)
|+
T Consensus 110 Ii 111 (395)
T PRK15454 110 VI 111 (395)
T ss_pred EE
Confidence 76
No 477
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=37.82 E-value=31 Score=25.03 Aligned_cols=60 Identities=18% Similarity=0.231 Sum_probs=27.3
Q ss_pred HHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEccCCCchh----HHHHHHhCCCeeeEeeee
Q 026235 139 ASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNE----IEEGLSNRGFEVVRLNTY 210 (241)
Q Consensus 139 a~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~~~~~~iL~~~g~~~~~~----L~~~L~~~G~~V~~~~vY 210 (241)
++.|.+. |++. ++. ++-.+.|.++...-.++.-..+....+. +.+.+++..+++.-...|
T Consensus 6 a~~l~~l------G~~i--~AT----~gTa~~L~~~Gi~~~~v~~~~~~~~~~~g~~~i~~~i~~~~IdlVIn~~~ 69 (95)
T PF02142_consen 6 AKRLAEL------GFEI--YAT----EGTAKFLKEHGIEVTEVVNKIGEGESPDGRVQIMDLIKNGKIDLVINTPY 69 (95)
T ss_dssp HHHHHHT------TSEE--EEE----HHHHHHHHHTT--EEECCEEHSTG-GGTHCHHHHHHHHTTSEEEEEEE--
T ss_pred HHHHHHC------CCEE--EEC----hHHHHHHHHcCCCceeeeeecccCccCCchhHHHHHHHcCCeEEEEEeCC
Confidence 4566666 7654 332 3344455554332233444444432333 777776665554333333
No 478
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=37.80 E-value=2.3e+02 Score=24.40 Aligned_cols=74 Identities=15% Similarity=0.027 Sum_probs=38.6
Q ss_pred CHHHHHHHhhhCCCCccEEEEEccCCCchhHHHHHHhCCCeeeEeeeeeeecCCCChHHHHHHc-CCCCEEEEECCc
Q 026235 163 TGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA-LSIPVVAVASPS 238 (241)
Q Consensus 163 t~e~L~~~l~~~~~~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~l-~~id~IvFtSps 238 (241)
+.+++...+......+.+|+++... -......++..|+++..+..............+.... .++.+|+++.+.
T Consensus 68 ~t~a~~~~~~~~~~~g~~vl~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~ 142 (350)
T cd00609 68 AQEALSLLLRALLNPGDEVLVPDPT--YPGYEAAARLAGAEVVPVPLDEEGGFLLDLELLEAAKTPKTKLLYLNNPN 142 (350)
T ss_pred cHHHHHHHHHHhCCCCCEEEEcCCC--chhHHHHHHHCCCEEEEEecccccCCccCHHHHHhhcCccceEEEEECCC
Confidence 3444443333333345677777554 3346667777777777776654333322112222112 467778877754
No 479
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=37.73 E-value=2.2e+02 Score=23.12 Aligned_cols=87 Identities=13% Similarity=0.040 Sum_probs=46.4
Q ss_pred CCeEEEeCCCCC-------hHHHHHHHHHCCCcEEEeceEEEeeC-CC-chHHHHHHhcCCCccEEEEeCHHHHHHHHHH
Q 026235 50 NPKVVVTRERGK-------NGKLIKALAKHRIDCLELPLIQHAQG-PD-TDRLSSVLNADTIFDWIIITSPEAGSVFLEA 120 (241)
Q Consensus 50 g~~VLitR~~~~-------~~~l~~~L~~~G~~v~~~P~~~~~~~-~~-~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~ 120 (241)
.++|++..+... ...+.+.++++|.++.....+..... .+ ...+.+.+..-.+.|+|+.++......+...
T Consensus 116 ~~~i~~i~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~a~~~~~a 195 (264)
T cd06267 116 HRRIAFIGGPPDLSTARERLEGYREALEEAGIPLDEELIVEGDFSEESGYEAARELLASGERPTAIFAANDLMAIGALRA 195 (264)
T ss_pred CceEEEecCCCccchHHHHHHHHHHHHHHcCCCCCcceEEecccchhhHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHH
Confidence 456776644322 23455667777753322211111111 11 1234455544346888888877666667777
Q ss_pred HHhcCC---CCcEEEEeCH
Q 026235 121 WKEAGT---PNVRIGVVGA 136 (241)
Q Consensus 121 l~~~~~---~~~~i~aIG~ 136 (241)
+.+.+. .++.+++.+.
T Consensus 196 l~~~g~~~~~~i~i~~~d~ 214 (264)
T cd06267 196 LRELGLRVPEDVSVVGFDD 214 (264)
T ss_pred HHHhCCCCCCceEEEeeCC
Confidence 777665 3566777654
No 480
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=37.69 E-value=1.6e+02 Score=27.21 Aligned_cols=34 Identities=18% Similarity=0.140 Sum_probs=28.1
Q ss_pred CCCCCCeEEEeCCCCChHHHHHHHHHCCCcEEEe
Q 026235 46 ASNSNPKVVVTRERGKNGKLIKALAKHRIDCLEL 79 (241)
Q Consensus 46 ~~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~ 79 (241)
.-+.|+++.|.-.....-.+.+.|+++|.++..+
T Consensus 283 ~~l~gkrv~i~~~~~~~~~la~~l~elGm~v~~~ 316 (410)
T cd01968 283 ARLEGKKAALYTGGVKSWSLVSALQDLGMEVVAT 316 (410)
T ss_pred HHhCCCEEEEEcCCchHHHHHHHHHHCCCEEEEE
Confidence 3468999998777667788999999999998766
No 481
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=37.64 E-value=2.4e+02 Score=23.77 Aligned_cols=77 Identities=12% Similarity=0.060 Sum_probs=39.8
Q ss_pred CCCCCHHHHHHHhhhCCCCccEEEEEccCCCchhHHHHHHhCCCeeeEeeeeeeecCCCChHHHHHHc--CCCCEEEEEC
Q 026235 159 PSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVAS 236 (241)
Q Consensus 159 p~~~t~e~L~~~l~~~~~~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~l--~~id~IvFtS 236 (241)
....+.+.|++++.+.... ..+.++-++...-...+..++.|+.+..+.-=+..+.....+++.+.+ -++|.++..+
T Consensus 8 g~Gsn~~al~~~~~~~~l~-~~i~~visn~~~~~~~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dliv~ag 86 (207)
T PLN02331 8 GGGSNFRAIHDACLDGRVN-GDVVVVVTNKPGCGGAEYARENGIPVLVYPKTKGEPDGLSPDELVDALRGAGVDFVLLAG 86 (207)
T ss_pred CCChhHHHHHHHHHcCCCC-eEEEEEEEeCCCChHHHHHHHhCCCEEEeccccCCCcccchHHHHHHHHhcCCCEEEEeC
Confidence 3466778888888766443 355444454433334555567787764322110011112223444444 3788877654
No 482
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=37.58 E-value=3.3e+02 Score=25.48 Aligned_cols=99 Identities=8% Similarity=-0.008 Sum_probs=55.8
Q ss_pred CCCCCCCeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhc
Q 026235 45 SASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA 124 (241)
Q Consensus 45 ~~~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~ 124 (241)
..-++||||++.-+......+...+++.|.++...-. .. .+.....+.+..+. .+.++.-.+ ....+.+.+.+.
T Consensus 295 ~~~L~Gkrv~i~~g~~~~~~~~~~l~elGmevv~~g~---~~-~~~~~~~~~~~~~~-~~~~i~~~~-d~~e~~~~i~~~ 368 (421)
T cd01976 295 RPRLEGKTVMLYVGGLRPRHYIGAYEDLGMEVVGTGY---EF-AHRDDYERTEVIPK-EGTLLYDDV-THYELEEFVKRL 368 (421)
T ss_pred HHHcCCCEEEEECCCCcHHHHHHHHHHCCCEEEEEEe---ec-CCHHHHhhHHhhcC-CceEEEcCC-CHHHHHHHHHHh
Confidence 3667999999887666677888899999999996333 21 12222333333333 244554333 233334444442
Q ss_pred CCCCcEEEEeCHHHHHHHHHhhhccCCCCceeec
Q 026235 125 GTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFS 158 (241)
Q Consensus 125 ~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~ 158 (241)
+..++.-|..-+...++. |+..+.+
T Consensus 369 ---~pDliig~~~~~~~a~k~------giP~~~~ 393 (421)
T cd01976 369 ---KPDLIGSGIKEKYVFQKM------GIPFRQM 393 (421)
T ss_pred ---CCCEEEecCcchhhhhhc------CCCeEeC
Confidence 233444444544555666 8876543
No 483
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=37.48 E-value=1.2e+02 Score=25.60 Aligned_cols=76 Identities=11% Similarity=0.083 Sum_probs=45.8
Q ss_pred CCHHHHHHHhhhCC-CCccEEEEEccCC-----CchhHHHHHHhCCCe-eeEeeeeeeecCCCChHHHHHHcCCCCEEEE
Q 026235 162 ATGKILASELPKNG-KKKCTVLYPASAK-----ASNEIEEGLSNRGFE-VVRLNTYTTEPVHHVDQTVLKQALSIPVVAV 234 (241)
Q Consensus 162 ~t~e~L~~~l~~~~-~~~~~iL~~~g~~-----~~~~L~~~L~~~G~~-V~~~~vY~~~~~~~~~~~~~~~l~~id~IvF 234 (241)
+....+.+.+.+.. ..+.+|+++.... ..+.+.+.+++.|++ +..+.+.++.. ...+++.+.+.+.|+|+|
T Consensus 12 ~~~~~i~~~~~~~ag~~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~v~~~~~~~~~~--a~~~~~~~~l~~ad~I~~ 89 (217)
T cd03145 12 YDNRAILQRFVARAGGAGARIVVIPAASEEPAEVGEEYRDVFERLGAREVEVLVIDSREA--ANDPEVVARLRDADGIFF 89 (217)
T ss_pred cCHHHHHHHHHHHcCCCCCcEEEEeCCCcChhHHHHHHHHHHHHcCCceeEEeccCChHH--cCCHHHHHHHHhCCEEEE
Confidence 34556666655443 2356777765543 234577788888984 56665554432 223345555678999999
Q ss_pred ECCcc
Q 026235 235 ASPSA 239 (241)
Q Consensus 235 tSps~ 239 (241)
+-..+
T Consensus 90 ~GG~~ 94 (217)
T cd03145 90 TGGDQ 94 (217)
T ss_pred eCCcH
Confidence 87654
No 484
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=37.42 E-value=53 Score=29.63 Aligned_cols=28 Identities=36% Similarity=0.494 Sum_probs=18.2
Q ss_pred eEEEe--CCCCChHHHHHHHHHCCCcEEEe
Q 026235 52 KVVVT--RERGKNGKLIKALAKHRIDCLEL 79 (241)
Q Consensus 52 ~VLit--R~~~~~~~l~~~L~~~G~~v~~~ 79 (241)
+|++| ||..++..+++.|+++|+++..+
T Consensus 147 ~V~VtESRP~~eG~~~ak~L~~~gI~~~~I 176 (301)
T COG1184 147 KVIVTESRPRGEGRIMAKELRQSGIPVTVI 176 (301)
T ss_pred EEEEEcCCCcchHHHHHHHHHHcCCceEEE
Confidence 56666 45556677777777777665543
No 485
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.25 E-value=2.3e+02 Score=25.31 Aligned_cols=160 Identities=14% Similarity=0.084 Sum_probs=85.5
Q ss_pred eEEEeCCCCChHHH----HHHHHHCCCcEEEeceEEEeeCCCchHHHHHH---hcCCCccEEEEeCH--HHHH--HHHHH
Q 026235 52 KVVVTRERGKNGKL----IKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NADTIFDWIIITSP--EAGS--VFLEA 120 (241)
Q Consensus 52 ~VLitR~~~~~~~l----~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l---~~l~~~d~IiFTS~--~aV~--~f~~~ 120 (241)
-+++....+.+..+ .+.+++.|+++..+-+-+.. ..+++.+.+ ++....|.|+.--| ..++ ..++.
T Consensus 30 aiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~---t~~el~~~I~~lN~d~~V~GIlvqlPlP~~i~~~~i~~~ 106 (287)
T PRK14181 30 AVVLIGNDPASEVYVGMKVKKATDLGMVSKAHRLPSDA---TLSDILKLIHRLNNDPNIHGILVQLPLPKHLDAQAILQA 106 (287)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCCCCeEEEcCCCCCCcCHHHHHhc
Confidence 35555554444333 44677789887765442221 123344444 44578899998877 3332 12222
Q ss_pred HHh-cCCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCC--CCccEEEEE-ccCCCchhHHHH
Q 026235 121 WKE-AGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEEG 196 (241)
Q Consensus 121 l~~-~~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~--~~~~~iL~~-~g~~~~~~L~~~ 196 (241)
+.. ...++..-+-.|.- - . |-...+.| -|+.+.++.|..+. ..|++++++ ||.....-|...
T Consensus 107 I~p~KDVDGl~p~n~g~l-----~-~------g~~~~~~P--cTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~l 172 (287)
T PRK14181 107 ISPDKDVDGLHPVNMGKL-----L-L------GETDGFIP--CTPAGIIELLKYYEIPLHGRHVAIVGRSNIVGKPLAAL 172 (287)
T ss_pred cCcccCcccCChhhHHHH-----h-c------CCCCCCCC--CCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHH
Confidence 211 11234443334422 1 2 32112444 48999998887653 457776655 555555568888
Q ss_pred HHhC----CCeeeEeeeeeeecCCCChHHHHHHcCCCCEEEEEC
Q 026235 197 LSNR----GFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVAS 236 (241)
Q Consensus 197 L~~~----G~~V~~~~vY~~~~~~~~~~~~~~~l~~id~IvFtS 236 (241)
|.++ |++|+-|.-+. . .+.+.+.+.|+|+-.-
T Consensus 173 L~~~~~~~~AtVtvchs~T----~----~l~~~~~~ADIvV~Av 208 (287)
T PRK14181 173 LMQKHPDTNATVTLLHSQS----E----NLTEILKTADIIIAAI 208 (287)
T ss_pred HHhCcCCCCCEEEEeCCCC----C----CHHHHHhhCCEEEEcc
Confidence 8888 67776543321 1 1222235677776543
No 486
>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. This group includes the ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. They share a similar topology with an N-terminal extracellular ligand-binding domain, a single transmembrane domain, and a C-terminal cytosolic region that contains kinase-like and catalytic domains. GC-D is specifically expressed in a subpopulation of olfactory sensory neurons. GC-E and GC-F are colocalized within the same photoreceptor cells of the retina and have important roles in phototransduction. Unlike the other family members, GC-E and GC-F have no known extracellular ligands. Instead, they are activated under low calcium conditions by guanylyl cyclase activating proteins called GCAPs. GC-D expressing neurons have been implicated in pheromone detection and GC-D is phyloge
Probab=37.22 E-value=2.1e+02 Score=25.93 Aligned_cols=81 Identities=20% Similarity=0.209 Sum_probs=45.0
Q ss_pred CeEEEeCCCCC-----hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcC---CCccEEEEeCH------HHHHH
Q 026235 51 PKVVVTRERGK-----NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD---TIFDWIIITSP------EAGSV 116 (241)
Q Consensus 51 ~~VLitR~~~~-----~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l---~~~d~IiFTS~------~aV~~ 116 (241)
++|.+...... .+.+.+.|++.|.++...-.+. .+...+...|..+ ...|.||+... ..+..
T Consensus 133 ~~vaii~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~----~~~~d~~~~L~~lk~~~~~~viv~~~~~~~~~~~~~~~ 208 (382)
T cd06371 133 AHVAIVSSPQDIWVETAQKLASALRAHGLPVGLVTSMG----PDEKGAREALKKVRSADRVRVVIMCMHSVLIGGEEQRL 208 (382)
T ss_pred eEEEEEEecccchHHHHHHHHHHHHHCCCcEEEEEEec----CCHHHHHHHHHHHhcCCCcEEEEEEeeccccCcHHHHH
Confidence 45555543332 4678888888998776543222 1222333444333 33678777543 45567
Q ss_pred HHHHHHhcCCCCcEEEEeC
Q 026235 117 FLEAWKEAGTPNVRIGVVG 135 (241)
Q Consensus 117 f~~~l~~~~~~~~~i~aIG 135 (241)
++..+.+.++.+-.+..||
T Consensus 209 i~~qa~~~Gm~~~~y~~i~ 227 (382)
T cd06371 209 LLETALEMGMTDGRYVFIP 227 (382)
T ss_pred HHHHHHHcCCcCCcEEEEE
Confidence 7788888877543333333
No 487
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=37.15 E-value=2.2e+02 Score=23.78 Aligned_cols=31 Identities=16% Similarity=0.074 Sum_probs=23.1
Q ss_pred CCCCeEEEeCCCC-ChHHHHHHHHHCCCcEEE
Q 026235 48 NSNPKVVVTRERG-KNGKLIKALAKHRIDCLE 78 (241)
Q Consensus 48 l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~ 78 (241)
++|++||||.... -+..+++.|.++|+++..
T Consensus 10 ~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~ 41 (259)
T PRK08213 10 LSGKTALVTGGSRGLGLQIAEALGEAGARVVL 41 (259)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHcCCEEEE
Confidence 5678899997654 356788888888987654
No 488
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=37.14 E-value=4.4e+02 Score=26.35 Aligned_cols=115 Identities=8% Similarity=0.006 Sum_probs=66.2
Q ss_pred ccCCCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeC----HHHHHHH
Q 026235 43 SASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVF 117 (241)
Q Consensus 43 ~~~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS----~~aV~~f 117 (241)
....+..+.+||+.-.... ...+...|+..|+++... .+..+..+.+ .-..+|.|+.-- .++++..
T Consensus 518 ~~~~~~~~~~ILivdD~~~~~~~l~~~L~~~g~~v~~a--------~~~~eal~~~-~~~~~Dlvl~D~~mp~~~G~e~~ 588 (779)
T PRK11091 518 EDDMPLPALNILLVEDIELNVIVARSVLEKLGNSVDVA--------MTGKEALEMF-DPDEYDLVLLDIQLPDMTGLDIA 588 (779)
T ss_pred cccccccccceEEEcCCHHHHHHHHHHHHHcCCEEEEE--------CCHHHHHHHh-hcCCCCEEEEcCCCCCCCHHHHH
Confidence 3344566788999877653 456778888889776532 3333333344 235788877532 2344443
Q ss_pred HHHHHhcC-CCC-cEEEEeCHHHHH---HHHHhhhccCCCCceeecCCCCCHHHHHHHhhhC
Q 026235 118 LEAWKEAG-TPN-VRIGVVGAGTAS---IFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (241)
Q Consensus 118 ~~~l~~~~-~~~-~~i~aIG~~Ta~---~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~ 174 (241)
-. +.+.. ..+ .+++++...... .+.+. |.. ++..+..+.+.|.+.|.+.
T Consensus 589 ~~-ir~~~~~~~~~~ii~~ta~~~~~~~~~~~~------G~~-~~l~KP~~~~~L~~~l~~~ 642 (779)
T PRK11091 589 RE-LRERYPREDLPPLVALTANVLKDKKEYLDA------GMD-DVLSKPLSVPALTAMIKKF 642 (779)
T ss_pred HH-HHhccccCCCCcEEEEECCchHhHHHHHHC------CCC-EEEECCCCHHHHHHHHHHH
Confidence 33 33322 133 366666543322 22344 776 4667778889999888655
No 489
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=37.06 E-value=1.4e+02 Score=24.93 Aligned_cols=73 Identities=16% Similarity=0.180 Sum_probs=42.7
Q ss_pred HHHHHHHCCCcEEEeceEEEeeCCC----chHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCC---CCcEEEEeCHH
Q 026235 65 LIKALAKHRIDCLELPLIQHAQGPD----TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGAG 137 (241)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~----~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~---~~~~i~aIG~~ 137 (241)
+.+.++++|.++.....+....... ...+.+.+.....+|+|+.+|-.....+.+.+.+.++ +++.+++++-.
T Consensus 142 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~av~~~~d~~a~g~~~al~~~g~~~p~dv~vvg~d~~ 221 (273)
T cd01541 142 FIKAYREHGIPFNPSNVITYTTEEKEEKLFEKIKEILKRPERPTAIVCYNDEIALRVIDLLKELGLKIPEDISVVGFDDS 221 (273)
T ss_pred HHHHHHHcCCCCChHHEEeccccchhhHHHHHHHHHHcCCCCCCEEEEcCcHHHHHHHHHHHHcCCCCCCcEEEEEcCCc
Confidence 5566777776543222222111111 1234444533356899998888888888888887765 36777777643
No 490
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=37.05 E-value=1.1e+02 Score=27.38 Aligned_cols=63 Identities=16% Similarity=0.204 Sum_probs=40.3
Q ss_pred CCCCeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCH
Q 026235 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP 111 (241)
Q Consensus 48 l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~ 111 (241)
..|.+|+++.+..-...+...++.+|+++..+|+-.- ...+.+.+.+.+..-.+.+.|.++.+
T Consensus 78 ~~~~~vlv~~~~~~~~~~~~~~~~~g~~~~~i~~~~~-~~~d~~~l~~~l~~~~~~~~v~~~~~ 140 (368)
T PRK13479 78 PRDGKVLVPDNGAYGARIAQIAEYLGIAHVVLDTGED-EPPDAAEVEAALAADPRITHVALVHC 140 (368)
T ss_pred CCCCeEEEEeCCchHHHHHHHHHHcCCcEEEEECCCC-CCCCHHHHHHHHHhCCCCcEEEEEcc
Confidence 3566788887654444456777889999999886421 11245666666643345667777776
No 491
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=36.99 E-value=1.6e+02 Score=26.30 Aligned_cols=75 Identities=19% Similarity=0.165 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhcCC-CCcEEEEeCH-----HHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEcc
Q 026235 113 AGSVFLEAWKEAGT-PNVRIGVVGA-----GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPAS 186 (241)
Q Consensus 113 aV~~f~~~l~~~~~-~~~~i~aIG~-----~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~~~~~~iL~~~g 186 (241)
||+.-.+...+.-. .+-++|+.|+ ..-+.|++. |+.+ +.+. +.+ +....+++|+
T Consensus 12 GV~rAi~~a~~~~~~~~~~vy~lG~iIHN~~vv~~L~~~------Gv~~--v~~~-------~~~-----~~g~~ViirA 71 (281)
T PF02401_consen 12 GVKRAIEIAEEALEEYPGPVYTLGPIIHNPQVVERLEKR------GVKV--VDDI-------DEV-----PEGDTVIIRA 71 (281)
T ss_dssp HHHHHHHHHHHHCCCHSS-EEECS-SSS-HHHHHHHHHC------TEEE--ESSG-------CGS------TTEEEEE-T
T ss_pred cHHHHHHHHHHHHHhcCCCEEEecCcccCHHHHHHHHHC------CCEE--ecCc-------ccc-----CCCCEEEEeC
Confidence 45555555544321 1249999996 567788998 9875 2221 111 1357888899
Q ss_pred CCCchhHHHHHHhCCCeeeEe
Q 026235 187 AKASNEIEEGLSNRGFEVVRL 207 (241)
Q Consensus 187 ~~~~~~L~~~L~~~G~~V~~~ 207 (241)
-+..+...+.|+++|+++...
T Consensus 72 HGv~~~~~~~l~~~g~~viDa 92 (281)
T PF02401_consen 72 HGVPPEVYEELKERGLEVIDA 92 (281)
T ss_dssp T---HHHHHHHHHTTEEEEE-
T ss_pred CCCCHHHHHHHHHcCCEEEEC
Confidence 999999999999999876444
No 492
>PRK05854 short chain dehydrogenase; Provisional
Probab=36.96 E-value=73 Score=28.14 Aligned_cols=73 Identities=12% Similarity=0.129 Sum_probs=42.4
Q ss_pred CCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcC-C--CccE--EEEeCHHHHHHHHHH
Q 026235 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD-T--IFDW--IIITSPEAGSVFLEA 120 (241)
Q Consensus 47 ~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l-~--~~d~--IiFTS~~aV~~f~~~ 120 (241)
.++|++++||....+ +..+++.|.++|++|... .+.. ...++..+.+... + ...+ +=+++..+|+.+++.
T Consensus 11 ~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~--~R~~--~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~ 86 (313)
T PRK05854 11 DLSGKRAVVTGASDGLGLGLARRLAAAGAEVILP--VRNR--AKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQ 86 (313)
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEE--eCCH--HHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHH
Confidence 467899999988653 677888999999887643 1111 0111122222111 1 1121 224788888888887
Q ss_pred HHh
Q 026235 121 WKE 123 (241)
Q Consensus 121 l~~ 123 (241)
+.+
T Consensus 87 ~~~ 89 (313)
T PRK05854 87 LRA 89 (313)
T ss_pred HHH
Confidence 654
No 493
>PLN02765 pyruvate kinase
Probab=36.91 E-value=1.8e+02 Score=28.36 Aligned_cols=71 Identities=17% Similarity=0.033 Sum_probs=40.1
Q ss_pred EEEEe-CHHHHHHHHHHHHhcCCCCcEEEEeC---------------HHHHHHHHHhhhccCCCCceeecCCCCC-----
Q 026235 105 WIIIT-SPEAGSVFLEAWKEAGTPNVRIGVVG---------------AGTASIFEEVIQSSKCSLDVAFSPSKAT----- 163 (241)
Q Consensus 105 ~IiFT-S~~aV~~f~~~l~~~~~~~~~i~aIG---------------~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t----- 163 (241)
.|+|| |....+.+..+ .+.++|+++- +.|++.|.=. ||+.+.+.....+
T Consensus 412 Ivv~T~sG~tAr~isk~-----RP~~pIla~t~~~~~~~~~~~~~~~~~~aR~L~L~-----~GV~P~~~~~~~~~e~~~ 481 (526)
T PLN02765 412 IIVFTSSGRAARLIAKY-----RPTMPVLSVVIPRLKTNQLKWSFTGAFQARQCLIV-----RGLFPMLADPRHSAESTS 481 (526)
T ss_pred EEEECCCcHHHHHHHhh-----CCCCCEEEEecCcccccccccccCcHHHHHHhhcc-----cCCEEEEecccccccccc
Confidence 45555 44555444432 2568888876 5677776644 6998866543333
Q ss_pred --HHHHHHHh----hh--CCCCccEEEEEc
Q 026235 164 --GKILASEL----PK--NGKKKCTVLYPA 185 (241)
Q Consensus 164 --~e~L~~~l----~~--~~~~~~~iL~~~ 185 (241)
.+.+++.. .+ ...+|..+++..
T Consensus 482 ~~~~~~~~~a~~~~~~~g~~~~GD~vvv~~ 511 (526)
T PLN02765 482 ATNESVLKVALDHGKAAGVIKSHDRVVVCQ 511 (526)
T ss_pred ccHHHHHHHHHHHHHHcCCCCCCCEEEEEe
Confidence 34444333 22 234577888775
No 494
>PRK06523 short chain dehydrogenase; Provisional
Probab=36.87 E-value=76 Score=26.67 Aligned_cols=35 Identities=9% Similarity=0.023 Sum_probs=27.4
Q ss_pred CCCCCCCeEEEeCCCC-ChHHHHHHHHHCCCcEEEe
Q 026235 45 SASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLEL 79 (241)
Q Consensus 45 ~~~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~ 79 (241)
..+++|++||||.... -...+.+.|.+.|+++..+
T Consensus 4 ~~~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~ 39 (260)
T PRK06523 4 FLELAGKRALVTGGTKGIGAATVARLLEAGARVVTT 39 (260)
T ss_pred CcCCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEE
Confidence 3457799999998764 3678999999999987643
No 495
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.78 E-value=1.1e+02 Score=27.52 Aligned_cols=52 Identities=12% Similarity=0.056 Sum_probs=36.5
Q ss_pred CCCCCeEEEe-CCCCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEE
Q 026235 47 SNSNPKVVVT-RERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIII 108 (241)
Q Consensus 47 ~l~g~~VLit-R~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiF 108 (241)
++.|++|++. |+.--+..++..|...|++|..+-. ....+.+.. ...|.||-
T Consensus 161 ~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs-------~T~~l~~~~---~~ADIvv~ 213 (287)
T PRK14176 161 DIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHV-------FTDDLKKYT---LDADILVV 213 (287)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEec-------cCCCHHHHH---hhCCEEEE
Confidence 6789998888 5555789999999999998865432 122233433 56788775
No 496
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=36.75 E-value=1.3e+02 Score=26.70 Aligned_cols=101 Identities=18% Similarity=0.138 Sum_probs=62.4
Q ss_pred CChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCC---CccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCH
Q 026235 60 GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT---IFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGA 136 (241)
Q Consensus 60 ~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~---~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~ 136 (241)
++..+..+.|+++|..++.+.=-.+ ...+.+.+.|..+. ...--|+||..+...++.... +..+++.||+
T Consensus 27 pga~e~l~~L~~~g~~~iflTNn~~---~s~~~~~~~L~~~~~~~~~~~~i~TS~~at~~~l~~~~----~~~kv~viG~ 99 (269)
T COG0647 27 PGAAEALKRLKAAGKPVIFLTNNST---RSREVVAARLSSLGGVDVTPDDIVTSGDATADYLAKQK----PGKKVYVIGE 99 (269)
T ss_pred chHHHHHHHHHHcCCeEEEEeCCCC---CCHHHHHHHHHhhcCCCCCHHHeecHHHHHHHHHHhhC----CCCEEEEECC
Confidence 5678888899999988776533222 22233444554422 222346699998887776432 3479999998
Q ss_pred HHH-HHHHHhhhccCCCCceeecC-------------CCCCHHHHHHHhhh
Q 026235 137 GTA-SIFEEVIQSSKCSLDVAFSP-------------SKATGKILASELPK 173 (241)
Q Consensus 137 ~Ta-~~L~~~~~~~~~Gi~~~~~p-------------~~~t~e~L~~~l~~ 173 (241)
.-- +.|+.. |+...... +..+.|.+.+++..
T Consensus 100 ~~l~~~l~~~------G~~~~~~~~~~~~d~Vv~g~d~~~~~e~l~~a~~~ 144 (269)
T COG0647 100 EGLKEELEGA------GFELVDEEEPARVDAVVVGLDRTLTYEKLAEALLA 144 (269)
T ss_pred cchHHHHHhC------CcEEeccCCCCcccEEEEecCCCCCHHHHHHHHHH
Confidence 765 677777 87543211 23567777766654
No 497
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=36.75 E-value=2.4e+02 Score=23.26 Aligned_cols=37 Identities=19% Similarity=0.092 Sum_probs=27.3
Q ss_pred CCccEEEEeCHHHHHHHHHHHHhcCC---CCcEEEEeCHH
Q 026235 101 TIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGAG 137 (241)
Q Consensus 101 ~~~d~IiFTS~~aV~~f~~~l~~~~~---~~~~i~aIG~~ 137 (241)
..+|+|+.++-.....++..+.+.++ +++.+++++..
T Consensus 174 ~~~~ai~~~~d~~a~~~~~~l~~~g~~ip~di~v~g~d~~ 213 (260)
T cd06286 174 DRPDAIFTGSDEVAAGIITEAKKQGIRVPEDLAIIGFDNQ 213 (260)
T ss_pred CCCCEEEEcchHHHHHHHHHHHHcCCCCCcceEEEeecCc
Confidence 46788888887777777777877765 46777777654
No 498
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=36.68 E-value=94 Score=28.50 Aligned_cols=66 Identities=15% Similarity=0.187 Sum_probs=41.4
Q ss_pred CCeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHH----------HHHHHHH
Q 026235 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE----------AGSVFLE 119 (241)
Q Consensus 50 g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~----------aV~~f~~ 119 (241)
|.+|+++-|.= .......+..|+++..+|.-. ...|.+.+...+. ++.+.|++++|| .++.+.+
T Consensus 99 gd~vl~~~Ptf--~~Y~~~a~~~g~~~~~v~~~~--~~~d~~~~~~~~~--~~~~lv~i~nPNNPTG~~~~~~~l~~l~~ 172 (356)
T COG0079 99 GDTVLIPEPTF--SMYEIAAQLAGAEVVKVPLKE--FRLDLDAILAAIR--DKTKLVFLCNPNNPTGTLLPREELRALLE 172 (356)
T ss_pred CCEEEEcCCCh--HHHHHHHHhcCCeEEEecccc--cccCHHHHHHhhh--cCCCEEEEeCCCCCCCCCCCHHHHHHHHH
Confidence 34677776653 455666777899999888876 2233344444442 257888888765 4666665
Q ss_pred HH
Q 026235 120 AW 121 (241)
Q Consensus 120 ~l 121 (241)
.+
T Consensus 173 ~~ 174 (356)
T COG0079 173 AL 174 (356)
T ss_pred hC
Confidence 54
No 499
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=36.57 E-value=1.3e+02 Score=27.29 Aligned_cols=65 Identities=12% Similarity=0.135 Sum_probs=38.4
Q ss_pred CHHHHHHHhhhCCCCccEEEEEccCCC-c-----hhHHHHHHhCCCeeeEeeeeeeecCCCChH---HHHHHc--CCCCE
Q 026235 163 TGKILASELPKNGKKKCTVLYPASAKA-S-----NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQ---TVLKQA--LSIPV 231 (241)
Q Consensus 163 t~e~L~~~l~~~~~~~~~iL~~~g~~~-~-----~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~---~~~~~l--~~id~ 231 (241)
..+.+-+.+.+. ++|+|++++... . +.+.+.|++.|+++ .+|.-.......+ +..+.. .++|+
T Consensus 13 ~l~~l~~~~~~~---g~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~---~~~~~v~~~p~~~~v~~~~~~~~~~~~D~ 86 (357)
T cd08181 13 CVEKHGEELAAL---GKRALIVTGKSSAKKNGSLDDVTKALEELGIEY---EIFDEVEENPSLETIMEAVEIAKKFNADF 86 (357)
T ss_pred HHHHHHHHHHHc---CCEEEEEeCCchHhhcCcHHHHHHHHHHcCCeE---EEeCCCCCCcCHHHHHHHHHHHHhcCCCE
Confidence 445565555543 379999987643 1 56888899888754 5564443333233 222222 47888
Q ss_pred EE
Q 026235 232 VA 233 (241)
Q Consensus 232 Iv 233 (241)
|+
T Consensus 87 II 88 (357)
T cd08181 87 VI 88 (357)
T ss_pred EE
Confidence 76
No 500
>PRK09004 FMN-binding protein MioC; Provisional
Probab=36.56 E-value=85 Score=24.75 Aligned_cols=62 Identities=18% Similarity=0.200 Sum_probs=34.7
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeC-H-------HHHHHHHHHHHhc--CCCCcEEE
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS-P-------EAGSVFLEAWKEA--GTPNVRIG 132 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS-~-------~aV~~f~~~l~~~--~~~~~~i~ 132 (241)
+.+++.+++.|+++..+.+. +. .++..+|.++|-+ . ...+.|++.+.+. .+.+++++
T Consensus 20 ~~l~~~~~~~g~~~~~~~~~------~~-------~~l~~~~~li~~~sT~G~Ge~p~~~~~f~~~L~~~~~~l~g~~~a 86 (146)
T PRK09004 20 DHLAEKLEEAGFSTETLHGP------LL-------DDLSASGLWLIVTSTHGAGDLPDNLQPFFEELQEQKPDLSQVRFA 86 (146)
T ss_pred HHHHHHHHHcCCceEEeccC------CH-------HHhccCCeEEEEECCCCCCCCChhHHHHHHHHHhcCCCCCCCEEE
Confidence 44556667778887754321 11 1234566655544 3 3456677766553 35677777
Q ss_pred EeCHH
Q 026235 133 VVGAG 137 (241)
Q Consensus 133 aIG~~ 137 (241)
+.|-.
T Consensus 87 VfGlG 91 (146)
T PRK09004 87 AIGIG 91 (146)
T ss_pred EEeec
Confidence 77743
Done!