Query 026235
Match_columns 241
No_of_seqs 189 out of 1415
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 08:46:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026235.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026235hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4es6_A Uroporphyrinogen-III sy 100.0 6.2E-39 2.1E-43 277.6 17.8 190 46-241 2-198 (254)
2 3re1_A Uroporphyrinogen-III sy 100.0 2E-38 6.9E-43 277.1 14.3 192 44-241 8-206 (269)
3 3mw8_A Uroporphyrinogen-III sy 100.0 1.8E-37 6E-42 266.2 17.4 182 50-241 1-185 (240)
4 1wcw_A Uroporphyrinogen III sy 100.0 1.8E-36 6.3E-41 262.5 16.1 184 45-241 3-196 (261)
5 1jr2_A Uroporphyrinogen-III sy 100.0 3.1E-36 1.1E-40 265.1 17.0 192 42-241 13-223 (286)
6 3d8t_A Uroporphyrinogen-III sy 100.0 1.9E-36 6.4E-41 266.7 13.7 184 45-241 28-221 (286)
7 3p9z_A Uroporphyrinogen III co 100.0 2.3E-29 7.8E-34 215.0 9.9 152 75-241 17-174 (229)
8 3p9z_A Uroporphyrinogen III co 99.8 2.8E-18 9.4E-23 146.2 13.6 117 48-174 108-224 (229)
9 1jr2_A Uroporphyrinogen-III sy 99.8 2.5E-18 8.7E-23 150.7 11.8 122 48-175 155-280 (286)
10 4es6_A Uroporphyrinogen-III sy 99.8 4.5E-18 1.5E-22 146.5 12.3 120 47-173 130-252 (254)
11 3re1_A Uroporphyrinogen-III sy 99.8 2.2E-18 7.6E-23 150.0 10.5 123 47-176 138-263 (269)
12 1wcw_A Uroporphyrinogen III sy 99.7 9.2E-18 3.2E-22 144.8 9.6 118 50-174 130-255 (261)
13 3mw8_A Uroporphyrinogen-III sy 99.7 1.1E-17 3.9E-22 142.7 9.9 120 46-172 116-239 (240)
14 3d8t_A Uroporphyrinogen-III sy 99.7 2E-17 6.9E-22 145.1 11.5 118 50-174 155-280 (286)
15 3d4o_A Dipicolinate synthase s 95.3 0.038 1.3E-06 47.7 7.2 174 48-238 3-223 (293)
16 2rir_A Dipicolinate synthase, 94.6 0.035 1.2E-06 48.0 5.0 176 48-238 5-225 (300)
17 2qh8_A Uncharacterized protein 94.2 0.84 2.9E-05 38.6 12.9 158 64-236 28-201 (302)
18 1ccw_A Protein (glutamate muta 94.0 0.78 2.7E-05 34.9 11.0 111 50-173 3-132 (137)
19 3gbv_A Putative LACI-family tr 93.6 0.49 1.7E-05 39.5 10.1 160 63-237 29-209 (304)
20 3lft_A Uncharacterized protein 93.6 0.58 2E-05 39.4 10.6 159 63-236 21-194 (295)
21 3qk7_A Transcriptional regulat 93.5 0.13 4.5E-06 43.4 6.3 154 63-236 30-195 (294)
22 3k5p_A D-3-phosphoglycerate de 93.4 0.62 2.1E-05 42.5 11.0 171 47-239 12-219 (416)
23 2yxb_A Coenzyme B12-dependent 93.4 0.9 3.1E-05 35.6 10.7 111 50-173 18-141 (161)
24 3egc_A Putative ribose operon 92.4 0.52 1.8E-05 39.3 8.5 153 63-236 28-194 (291)
25 3gv0_A Transcriptional regulat 92.4 0.18 6.1E-06 42.3 5.5 154 64-236 31-196 (288)
26 3g1w_A Sugar ABC transporter; 92.0 0.24 8.1E-06 41.7 5.8 169 50-236 4-195 (305)
27 3l49_A ABC sugar (ribose) tran 91.7 0.59 2E-05 38.8 7.9 134 50-203 5-158 (291)
28 1lss_A TRK system potassium up 91.6 2.6 8.9E-05 30.7 10.7 115 50-172 4-135 (140)
29 2pln_A HP1043, response regula 91.3 3.1 0.00011 30.0 11.4 110 46-174 14-130 (137)
30 3gt7_A Sensor protein; structu 91.1 3.7 0.00013 30.5 12.0 109 49-174 6-124 (154)
31 3llv_A Exopolyphosphatase-rela 91.0 2.3 8E-05 31.5 10.0 116 49-172 5-136 (141)
32 2fep_A Catabolite control prot 90.9 0.59 2E-05 39.1 7.2 153 63-236 36-203 (289)
33 3c3k_A Alanine racemase; struc 90.6 2 6.7E-05 35.7 10.2 148 64-236 29-192 (285)
34 3brq_A HTH-type transcriptiona 90.5 0.59 2E-05 38.7 6.8 154 63-236 41-208 (296)
35 3c85_A Putative glutathione-re 90.4 1.7 5.7E-05 34.0 9.0 119 47-173 36-173 (183)
36 2hmt_A YUAA protein; RCK, KTN, 90.2 1.8 6E-05 31.8 8.6 117 48-172 4-137 (144)
37 3d8u_A PURR transcriptional re 90.1 0.55 1.9E-05 38.6 6.2 127 63-210 23-159 (275)
38 3g85_A Transcriptional regulat 89.8 1.1 3.8E-05 37.1 7.9 153 63-236 32-196 (289)
39 3k4h_A Putative transcriptiona 89.3 0.39 1.3E-05 40.0 4.7 153 63-236 33-200 (292)
40 3dbi_A Sugar-binding transcrip 89.2 1 3.6E-05 38.5 7.5 153 63-236 83-250 (338)
41 2g1u_A Hypothetical protein TM 89.2 2.1 7.3E-05 32.5 8.6 118 46-173 15-151 (155)
42 2rgy_A Transcriptional regulat 88.9 0.88 3E-05 38.0 6.7 152 64-236 29-197 (290)
43 3k9c_A Transcriptional regulat 88.8 0.72 2.5E-05 38.6 6.0 152 63-236 31-193 (289)
44 3bbl_A Regulatory protein of L 88.7 1.2 4.1E-05 37.0 7.4 129 63-210 28-164 (287)
45 3h1g_A Chemotaxis protein CHEY 88.5 5.2 0.00018 28.5 11.6 111 48-174 3-124 (129)
46 2o20_A Catabolite control prot 88.5 1.4 4.8E-05 37.6 7.8 165 51-236 64-247 (332)
47 1dbq_A Purine repressor; trans 88.3 0.83 2.8E-05 37.8 6.1 154 64-236 28-195 (289)
48 3e3m_A Transcriptional regulat 88.2 1.8 6.2E-05 37.3 8.4 135 51-206 71-223 (355)
49 3fwz_A Inner membrane protein 88.2 4.4 0.00015 30.2 9.6 114 51-172 8-138 (140)
50 3rot_A ABC sugar transporter, 88.1 1.3 4.6E-05 37.0 7.3 142 51-207 4-166 (297)
51 2hsg_A Glucose-resistance amyl 88.0 0.79 2.7E-05 39.1 5.9 152 64-236 81-247 (332)
52 3gl9_A Response regulator; bet 87.9 5.6 0.00019 28.2 11.6 106 51-173 3-118 (122)
53 3eod_A Protein HNR; response r 87.8 5.7 0.00019 28.2 11.7 111 46-174 3-123 (130)
54 2fvy_A D-galactose-binding per 87.7 7.3 0.00025 32.2 11.7 134 63-210 22-179 (309)
55 3kke_A LACI family transcripti 87.2 1.3 4.6E-05 37.1 6.8 151 63-236 35-205 (303)
56 3tb6_A Arabinose metabolism tr 87.0 1.4 4.9E-05 36.4 6.8 127 63-210 35-175 (298)
57 1sc6_A PGDH, D-3-phosphoglycer 86.9 7.7 0.00026 34.9 12.0 164 51-239 5-208 (404)
58 3lte_A Response regulator; str 86.8 6.6 0.00023 27.8 10.3 110 49-175 5-123 (132)
59 1id1_A Putative potassium chan 86.4 8.7 0.0003 28.8 10.9 114 50-172 3-138 (153)
60 3kht_A Response regulator; PSI 86.2 7.7 0.00026 28.0 11.3 111 48-173 3-124 (144)
61 3hdv_A Response regulator; PSI 85.2 8.3 0.00028 27.5 12.0 110 50-175 7-125 (136)
62 3ksm_A ABC-type sugar transpor 85.2 0.83 2.8E-05 37.4 4.3 125 63-205 20-162 (276)
63 3huu_A Transcription regulator 85.0 1.3 4.3E-05 37.3 5.5 121 64-206 48-179 (305)
64 3kjx_A Transcriptional regulat 84.6 0.79 2.7E-05 39.4 4.1 152 64-236 89-255 (344)
65 2gkg_A Response regulator homo 84.5 7.1 0.00024 27.1 8.7 111 50-174 5-122 (127)
66 1qpz_A PURA, protein (purine n 83.6 2.2 7.6E-05 36.4 6.5 128 64-210 79-216 (340)
67 3gyb_A Transcriptional regulat 83.0 1.1 3.7E-05 37.0 4.1 150 63-236 25-184 (280)
68 3clk_A Transcription regulator 82.9 4.7 0.00016 33.3 8.1 154 63-236 28-193 (290)
69 3jvd_A Transcriptional regulat 82.7 2.9 9.9E-05 35.7 6.9 128 50-203 64-206 (333)
70 1y80_A Predicted cobalamin bin 82.7 5.4 0.00018 32.1 8.2 90 50-145 88-189 (210)
71 2xij_A Methylmalonyl-COA mutas 82.3 18 0.0006 35.5 12.8 111 50-173 604-727 (762)
72 2i2x_B MTAC, methyltransferase 82.2 11 0.00037 31.6 10.2 110 49-171 122-241 (258)
73 3h75_A Periplasmic sugar-bindi 82.1 4.7 0.00016 34.4 8.1 131 64-202 25-176 (350)
74 3grc_A Sensor protein, kinase; 82.1 12 0.0004 26.8 11.2 111 50-174 6-124 (140)
75 2j48_A Two-component sensor ki 81.7 7.1 0.00024 26.6 7.6 109 50-175 1-116 (119)
76 3jtm_A Formate dehydrogenase, 81.7 12 0.00041 33.0 10.6 154 64-239 31-231 (351)
77 3aek_A Light-independent proto 81.7 0.59 2E-05 42.6 2.1 146 51-209 184-339 (437)
78 2zay_A Response regulator rece 81.6 13 0.00043 26.9 10.2 109 48-173 6-124 (147)
79 2h0a_A TTHA0807, transcription 81.4 1.7 5.9E-05 35.6 4.8 127 63-210 19-158 (276)
80 2rdm_A Response regulator rece 80.6 12 0.00043 26.2 9.1 110 48-174 3-120 (132)
81 3cg4_A Response regulator rece 80.6 6.8 0.00023 28.2 7.5 109 48-173 5-123 (142)
82 3hs3_A Ribose operon repressor 80.5 3.6 0.00012 33.9 6.5 142 63-236 30-186 (277)
83 2amj_A Modulator of drug activ 80.3 2.5 8.5E-05 34.2 5.3 57 178-238 12-80 (204)
84 2cuk_A Glycerate dehydrogenase 80.3 4.9 0.00017 34.7 7.5 165 51-239 1-204 (311)
85 2wm8_A MDP-1, magnesium-depend 80.2 7.1 0.00024 30.2 7.9 106 58-174 69-179 (187)
86 2h3h_A Sugar ABC transporter, 80.2 3.2 0.00011 34.9 6.2 123 65-206 22-158 (313)
87 3i42_A Response regulator rece 79.6 7 0.00024 27.5 7.1 109 50-175 3-120 (127)
88 3rht_A (gatase1)-like protein; 79.6 3.1 0.00011 35.3 5.8 75 49-136 3-87 (259)
89 3f2v_A General stress protein 79.4 1.6 5.6E-05 35.2 3.8 59 180-238 3-68 (192)
90 2hqb_A Transcriptional activat 79.2 8.7 0.0003 32.3 8.7 156 63-237 27-190 (296)
91 2iks_A DNA-binding transcripti 79.1 4.8 0.00016 33.3 6.9 119 64-203 41-170 (293)
92 3t6k_A Response regulator rece 79.1 15 0.00052 26.3 10.9 109 49-174 3-121 (136)
93 4g2n_A D-isomer specific 2-hyd 79.0 29 0.00098 30.4 12.2 167 50-239 28-238 (345)
94 3m6m_D Sensory/regulatory prot 78.9 16 0.00055 26.5 12.2 112 47-175 11-134 (143)
95 3d64_A Adenosylhomocysteinase; 78.7 19 0.00066 33.3 11.3 38 41-78 66-104 (494)
96 3lua_A Response regulator rece 78.6 16 0.00053 26.2 10.3 109 50-174 4-124 (140)
97 2x7x_A Sensor protein; transfe 78.5 8.2 0.00028 32.5 8.3 93 101-206 61-164 (325)
98 3l4b_C TRKA K+ channel protien 78.4 9 0.00031 30.6 8.2 68 99-172 62-132 (218)
99 3aek_B Light-independent proto 77.9 7.9 0.00027 36.1 8.6 138 61-211 171-314 (525)
100 1k68_A Phytochrome response re 77.2 16 0.00056 25.7 11.6 108 50-173 2-127 (140)
101 4fs3_A Enoyl-[acyl-carrier-pro 77.0 11 0.00039 31.0 8.6 86 46-135 2-95 (256)
102 3hv2_A Response regulator/HD d 77.0 19 0.00065 26.3 10.7 110 46-173 10-129 (153)
103 3hly_A Flavodoxin-like domain; 76.4 5.3 0.00018 30.7 5.9 66 63-135 19-89 (161)
104 5nul_A Flavodoxin; electron tr 76.1 1.6 5.4E-05 32.5 2.7 61 63-135 17-86 (138)
105 3fni_A Putative diflavin flavo 75.8 9.7 0.00033 29.2 7.3 68 63-136 23-95 (159)
106 3miz_A Putative transcriptiona 75.6 1.7 5.8E-05 36.3 3.1 152 64-236 35-205 (301)
107 3h5i_A Response regulator/sens 75.6 12 0.00042 26.9 7.6 108 48-173 3-120 (140)
108 2ekl_A D-3-phosphoglycerate de 75.2 11 0.00039 32.4 8.3 165 49-239 4-207 (313)
109 2q62_A ARSH; alpha/beta, flavo 75.0 5.6 0.00019 33.3 6.1 87 48-135 32-143 (247)
110 3lkv_A Uncharacterized conserv 74.7 26 0.00088 29.4 10.4 170 51-235 9-200 (302)
111 1req_A Methylmalonyl-COA mutas 74.7 28 0.00095 33.9 11.5 111 50-173 596-719 (727)
112 4dad_A Putative pilus assembly 74.6 21 0.00072 25.6 9.5 113 45-174 15-138 (146)
113 3rqi_A Response regulator prot 74.0 27 0.00092 26.6 11.9 110 47-174 4-122 (184)
114 1rtt_A Conserved hypothetical 73.9 6.9 0.00023 30.7 6.1 83 51-134 7-114 (193)
115 1j4a_A D-LDH, D-lactate dehydr 73.6 16 0.00053 31.8 8.9 167 51-239 2-210 (333)
116 3uce_A Dehydrogenase; rossmann 73.5 1.8 6.2E-05 34.9 2.6 65 47-111 3-68 (223)
117 1k66_A Phytochrome response re 73.3 22 0.00076 25.3 10.9 110 48-173 4-134 (149)
118 3hg7_A D-isomer specific 2-hyd 73.0 24 0.00083 30.6 9.9 169 47-239 2-205 (324)
119 2qip_A Protein of unknown func 72.9 1.2 4.2E-05 34.8 1.4 81 62-145 63-152 (165)
120 4e7p_A Response regulator; DNA 72.8 24 0.00083 25.5 10.6 113 47-175 17-138 (150)
121 3mm4_A Histidine kinase homolo 72.0 33 0.0011 26.8 10.5 114 43-174 54-193 (206)
122 3jy6_A Transcriptional regulat 71.9 13 0.00045 30.2 7.7 115 63-198 27-144 (276)
123 2yq5_A D-isomer specific 2-hyd 71.6 7 0.00024 34.4 6.1 170 51-239 2-211 (343)
124 2g76_A 3-PGDH, D-3-phosphoglyc 71.4 13 0.00045 32.5 7.9 163 51-239 27-230 (335)
125 3cg0_A Response regulator rece 71.4 24 0.00082 24.9 9.9 109 47-173 6-124 (140)
126 3hzh_A Chemotaxis response reg 71.3 28 0.00094 25.6 11.7 113 47-175 33-155 (157)
127 3f6r_A Flavodoxin; FMN binding 71.2 4.7 0.00016 30.1 4.4 63 63-136 20-93 (148)
128 3r6w_A FMN-dependent NADH-azor 70.8 4.4 0.00015 32.5 4.3 59 180-238 3-97 (212)
129 3l9w_A Glutathione-regulated p 70.5 20 0.00067 32.2 9.0 103 50-160 4-123 (413)
130 1sqs_A Conserved hypothetical 70.4 5.8 0.0002 32.5 5.1 70 65-134 24-122 (242)
131 3hdg_A Uncharacterized protein 70.4 26 0.00087 24.8 11.0 107 50-174 7-122 (137)
132 3tem_A Ribosyldihydronicotinam 70.2 2.6 8.9E-05 34.8 2.9 35 179-213 2-44 (228)
133 2qr3_A Two-component system re 70.2 26 0.00088 24.7 10.1 107 50-174 3-123 (140)
134 4dik_A Flavoprotein; TM0755, e 69.8 7 0.00024 35.2 5.8 82 51-136 266-360 (410)
135 1mio_B Nitrogenase molybdenum 69.8 16 0.00054 33.2 8.3 142 62-210 184-344 (458)
136 3e61_A Putative transcriptiona 69.7 24 0.00083 28.5 8.8 147 63-236 28-185 (277)
137 3kto_A Response regulator rece 69.6 27 0.00093 24.8 9.2 107 50-174 6-123 (136)
138 3heb_A Response regulator rece 69.4 29 0.001 25.1 12.0 109 50-174 4-132 (152)
139 3oet_A Erythronate-4-phosphate 69.0 6.2 0.00021 35.4 5.3 162 51-239 4-181 (381)
140 1cyd_A Carbonyl reductase; sho 68.9 27 0.00091 27.8 8.8 65 47-111 4-85 (244)
141 1xg5_A ARPG836; short chain de 68.8 45 0.0015 27.3 10.5 33 47-79 29-62 (279)
142 1u7z_A Coenzyme A biosynthesis 68.6 13 0.00046 30.7 6.9 33 47-79 5-54 (226)
143 2fzv_A Putative arsenical resi 68.6 4 0.00014 35.0 3.7 60 179-238 59-133 (279)
144 1xdw_A NAD+-dependent (R)-2-hy 68.6 27 0.00093 30.2 9.3 167 51-238 1-208 (331)
145 3ruf_A WBGU; rossmann fold, UD 68.6 18 0.00061 30.7 8.0 64 45-111 20-109 (351)
146 3rd5_A Mypaa.01249.C; ssgcid, 68.5 24 0.0008 29.4 8.7 36 44-79 10-46 (291)
147 4fe7_A Xylose operon regulator 68.3 6.5 0.00022 34.7 5.3 120 65-205 46-175 (412)
148 2hpv_A FMN-dependent NADH-azor 68.2 3.7 0.00013 32.7 3.3 34 180-213 3-50 (208)
149 4e5n_A Thermostable phosphite 68.1 4.3 0.00015 35.5 3.9 166 50-239 2-211 (330)
150 4b79_A PA4098, probable short- 68.0 19 0.00064 30.0 7.8 32 48-79 9-41 (242)
151 4eyg_A Twin-arginine transloca 68.0 35 0.0012 28.7 9.8 122 101-236 71-202 (368)
152 3t4x_A Oxidoreductase, short c 68.0 26 0.00088 28.7 8.7 34 46-79 6-40 (267)
153 1fs0_G ATP synthase gamma subu 67.8 7.3 0.00025 32.2 5.1 49 102-156 57-116 (230)
154 3u7q_A Nitrogenase molybdenum- 67.2 12 0.00041 34.6 7.0 137 60-210 233-380 (492)
155 2hqr_A Putative transcriptiona 67.0 43 0.0015 26.1 10.8 106 52-175 2-113 (223)
156 1mio_A Nitrogenase molybdenum 66.9 4.7 0.00016 37.7 4.2 140 61-211 220-368 (533)
157 1sqs_A Conserved hypothetical 66.7 6 0.00021 32.4 4.4 59 180-238 3-89 (242)
158 1t0i_A YLR011WP; FMN binding p 66.7 8 0.00027 30.2 5.0 17 222-238 78-94 (191)
159 3kp1_A D-ornithine aminomutase 66.6 20 0.00069 34.6 8.3 112 50-174 602-732 (763)
160 3eul_A Possible nitrate/nitrit 66.5 34 0.0012 24.7 9.2 115 45-175 10-133 (152)
161 2fzv_A Putative arsenical resi 66.4 8.5 0.00029 32.9 5.4 86 49-135 57-168 (279)
162 4id9_A Short-chain dehydrogena 66.4 28 0.00096 29.3 8.9 68 40-110 9-85 (347)
163 2q62_A ARSH; alpha/beta, flavo 66.2 7.4 0.00025 32.5 4.9 60 179-238 35-108 (247)
164 2hpv_A FMN-dependent NADH-azor 66.2 7.1 0.00024 30.9 4.7 61 63-123 24-122 (208)
165 3d3w_A L-xylulose reductase; u 66.1 31 0.0011 27.5 8.7 34 46-79 3-37 (244)
166 2ag5_A DHRS6, dehydrogenase/re 65.9 25 0.00087 28.3 8.2 33 47-79 3-36 (246)
167 3l5o_A Uncharacterized protein 65.7 10 0.00034 32.4 5.7 112 47-173 138-253 (270)
168 2fz5_A Flavodoxin; alpha/beta 65.6 4.4 0.00015 29.6 3.1 61 63-135 18-87 (137)
169 4dgs_A Dehydrogenase; structur 65.2 27 0.00092 30.6 8.6 163 50-238 30-232 (340)
170 1rli_A Trp repressor binding p 65.2 6.9 0.00024 30.1 4.3 19 220-238 63-81 (184)
171 2qxy_A Response regulator; reg 65.1 34 0.0012 24.2 11.8 107 50-174 4-118 (142)
172 1e5d_A Rubredoxin\:oxygen oxid 64.9 19 0.00065 31.3 7.6 79 50-135 252-343 (402)
173 3f2v_A General stress protein 64.8 1.6 5.5E-05 35.3 0.5 60 62-122 19-85 (192)
174 4dim_A Phosphoribosylglycinami 64.6 17 0.00057 31.8 7.2 78 48-126 5-96 (403)
175 2rjn_A Response regulator rece 64.3 38 0.0013 24.5 12.6 113 47-174 4-123 (154)
176 3nhm_A Response regulator; pro 64.2 34 0.0012 23.9 7.9 110 50-174 4-119 (133)
177 2aef_A Calcium-gated potassium 64.1 15 0.00051 29.6 6.3 112 50-171 9-137 (234)
178 3f9i_A 3-oxoacyl-[acyl-carrier 64.0 30 0.001 27.7 8.2 34 45-78 9-43 (249)
179 3r0j_A Possible two component 64.0 54 0.0018 26.2 11.1 109 47-173 20-137 (250)
180 2q5c_A NTRC family transcripti 64.0 30 0.001 27.6 8.1 55 130-192 54-108 (196)
181 3h5o_A Transcriptional regulat 63.5 12 0.0004 31.8 5.8 153 63-236 82-247 (339)
182 1dxy_A D-2-hydroxyisocaproate 63.5 32 0.0011 29.8 8.7 167 51-239 1-208 (333)
183 2b4a_A BH3024; flavodoxin-like 63.4 28 0.00097 24.6 7.3 116 43-175 8-129 (138)
184 1t5b_A Acyl carrier protein ph 63.3 12 0.00042 29.1 5.5 59 180-238 3-96 (201)
185 3td9_A Branched chain amino ac 63.1 56 0.0019 27.4 10.2 121 101-235 80-211 (366)
186 3ezx_A MMCP 1, monomethylamine 63.0 23 0.00079 28.7 7.3 90 50-145 92-195 (215)
187 2vzf_A NADH-dependent FMN redu 62.6 3.4 0.00012 32.8 2.1 67 69-135 30-109 (197)
188 2xdq_A Light-independent proto 62.6 29 0.001 31.3 8.6 141 51-209 197-348 (460)
189 3to5_A CHEY homolog; alpha(5)b 62.5 45 0.0015 24.7 11.1 109 49-173 11-129 (134)
190 3m3p_A Glutamine amido transfe 62.4 7.2 0.00025 32.7 4.1 54 49-111 2-57 (250)
191 2pju_A Propionate catabolism o 62.1 22 0.00077 29.2 7.1 67 130-204 66-132 (225)
192 3tem_A Ribosyldihydronicotinam 62.0 3.9 0.00013 33.7 2.3 73 50-122 1-119 (228)
193 3l4e_A Uncharacterized peptida 61.9 17 0.00058 29.4 6.2 71 48-126 25-102 (206)
194 1qkk_A DCTD, C4-dicarboxylate 61.9 42 0.0015 24.2 11.8 107 50-174 3-118 (155)
195 1xrs_B D-lysine 5,6-aminomutas 61.8 40 0.0014 28.5 8.7 111 50-173 120-254 (262)
196 3fvw_A Putative NAD(P)H-depend 61.5 14 0.00046 29.3 5.5 57 180-238 4-77 (192)
197 3gbv_A Putative LACI-family tr 61.3 24 0.00082 28.8 7.2 75 63-138 159-235 (304)
198 3oig_A Enoyl-[acyl-carrier-pro 60.9 36 0.0012 27.6 8.3 86 46-135 3-96 (266)
199 3ek2_A Enoyl-(acyl-carrier-pro 60.7 31 0.001 27.9 7.8 87 45-135 9-101 (271)
200 3snk_A Response regulator CHEY 60.7 30 0.001 24.4 6.9 109 49-175 13-131 (135)
201 3l7n_A Putative uncharacterize 60.6 15 0.00053 29.9 5.8 52 51-111 1-54 (236)
202 2k6g_A Replication factor C su 60.5 15 0.0005 26.8 5.0 33 45-77 30-64 (109)
203 4a26_A Putative C-1-tetrahydro 60.5 16 0.00056 31.6 6.1 163 51-237 40-219 (300)
204 1xq1_A Putative tropinone redu 60.2 32 0.0011 27.8 7.8 36 44-79 8-44 (266)
205 3hut_A Putative branched-chain 60.2 37 0.0013 28.5 8.4 124 100-237 70-203 (358)
206 3cz5_A Two-component response 60.1 45 0.0016 24.0 9.5 111 48-175 3-123 (153)
207 3lcm_A SMU.1420, putative oxid 59.5 5.6 0.00019 31.7 2.8 40 199-238 28-83 (196)
208 3i1j_A Oxidoreductase, short c 59.5 34 0.0012 27.3 7.8 86 46-135 10-103 (247)
209 3vot_A L-amino acid ligase, BL 59.5 71 0.0024 28.0 10.5 79 48-126 3-99 (425)
210 2cok_A Poly [ADP-ribose] polym 59.0 17 0.00058 26.7 5.2 33 45-77 8-41 (113)
211 1kjq_A GART 2, phosphoribosylg 58.9 25 0.00087 30.4 7.3 75 49-124 10-96 (391)
212 3q2o_A Phosphoribosylaminoimid 58.9 83 0.0029 27.2 10.7 35 46-80 10-44 (389)
213 1tjy_A Sugar transport protein 58.8 18 0.00061 30.3 6.1 159 63-236 23-197 (316)
214 3jte_A Response regulator rece 58.8 45 0.0015 23.6 11.8 108 50-174 3-120 (143)
215 3o38_A Short chain dehydrogena 58.7 56 0.0019 26.4 9.1 88 44-135 16-110 (266)
216 3u62_A Shikimate dehydrogenase 58.7 7.8 0.00027 32.5 3.7 79 159-240 90-178 (253)
217 1q7r_A Predicted amidotransfer 58.3 22 0.00074 28.6 6.3 50 48-112 21-70 (219)
218 2qvg_A Two component response 58.3 46 0.0016 23.5 10.2 108 50-173 7-131 (143)
219 1t5b_A Acyl carrier protein ph 58.2 19 0.00064 27.9 5.8 29 95-123 79-114 (201)
220 3g85_A Transcriptional regulat 58.1 20 0.00068 29.2 6.1 73 63-135 147-224 (289)
221 4gi5_A Quinone reductase; prot 57.9 12 0.00042 31.9 4.9 37 179-215 23-67 (280)
222 4fgs_A Probable dehydrogenase 57.8 39 0.0013 28.5 8.0 70 47-123 26-99 (273)
223 4gi5_A Quinone reductase; prot 57.7 6 0.00021 33.9 2.8 78 46-123 18-140 (280)
224 3h9u_A Adenosylhomocysteinase; 57.3 1.1E+02 0.0039 27.7 12.6 72 163-237 193-275 (436)
225 1qgu_B Protein (nitrogenase mo 57.0 4.4 0.00015 37.8 2.0 140 62-210 233-392 (519)
226 1jye_A Lactose operon represso 56.9 25 0.00086 29.8 6.8 154 63-236 81-246 (349)
227 3njr_A Precorrin-6Y methylase; 56.7 41 0.0014 26.4 7.7 100 109-216 85-186 (204)
228 3oec_A Carveol dehydrogenase ( 56.6 31 0.001 29.2 7.3 35 45-79 41-76 (317)
229 2fwm_X 2,3-dihydro-2,3-dihydro 56.6 40 0.0014 27.2 7.7 34 46-79 3-37 (250)
230 2ayx_A Sensor kinase protein R 56.6 77 0.0026 25.6 10.8 110 47-174 126-244 (254)
231 3rih_A Short chain dehydrogena 56.5 61 0.0021 27.1 9.1 76 44-123 35-115 (293)
232 3rkr_A Short chain oxidoreduct 56.4 13 0.00044 30.5 4.6 100 32-135 11-115 (262)
233 3cnb_A DNA-binding response re 56.3 49 0.0017 23.2 12.1 109 49-174 7-127 (143)
234 4dry_A 3-oxoacyl-[acyl-carrier 56.1 25 0.00085 29.3 6.5 35 45-79 28-63 (281)
235 1ydg_A Trp repressor binding p 55.9 5.9 0.0002 31.5 2.4 60 179-238 7-88 (211)
236 4gx0_A TRKA domain protein; me 55.6 58 0.002 29.9 9.5 114 50-172 127-257 (565)
237 2vzf_A NADH-dependent FMN redu 55.5 9 0.00031 30.3 3.4 46 193-238 25-79 (197)
238 2ebu_A Replication factor C su 55.5 17 0.00058 26.7 4.6 33 45-77 20-54 (112)
239 2hna_A Protein MIOC, flavodoxi 55.4 27 0.00092 25.9 6.0 61 63-136 20-90 (147)
240 3kb6_A D-lactate dehydrogenase 55.3 2.7 9.3E-05 36.9 0.3 167 51-239 1-205 (334)
241 3pk0_A Short-chain dehydrogena 55.2 55 0.0019 26.6 8.5 87 45-135 5-97 (262)
242 3k5i_A Phosphoribosyl-aminoimi 55.0 1.1E+02 0.0037 26.9 10.9 32 49-80 23-54 (403)
243 1l7b_A DNA ligase; BRCT, autos 55.0 16 0.00053 25.8 4.2 34 44-77 4-38 (92)
244 3rpe_A MDAB, modulator of drug 54.8 9.4 0.00032 31.4 3.5 56 179-238 26-93 (218)
245 3pp8_A Glyoxylate/hydroxypyruv 54.3 1E+02 0.0035 26.4 11.1 60 177-239 138-204 (315)
246 3k1y_A Oxidoreductase; structu 54.3 13 0.00045 29.6 4.2 63 73-135 48-125 (191)
247 3edm_A Short chain dehydrogena 54.2 39 0.0013 27.5 7.3 34 46-79 4-38 (259)
248 3fvw_A Putative NAD(P)H-depend 54.1 19 0.00065 28.4 5.2 72 51-123 3-95 (192)
249 3egc_A Putative ribose operon 54.1 54 0.0018 26.6 8.2 89 50-138 125-225 (291)
250 3m9w_A D-xylose-binding peripl 54.0 52 0.0018 27.0 8.2 116 63-198 22-143 (313)
251 2zki_A 199AA long hypothetical 54.0 11 0.00036 29.5 3.6 58 180-238 6-80 (199)
252 2gk3_A Putative cytoplasmic pr 53.8 9.8 0.00033 31.8 3.5 47 58-110 38-85 (256)
253 4gkb_A 3-oxoacyl-[acyl-carrier 53.7 73 0.0025 26.4 9.0 150 46-209 3-183 (258)
254 1t0i_A YLR011WP; FMN binding p 53.6 11 0.00039 29.3 3.7 29 93-121 75-110 (191)
255 1d4a_A DT-diaphorase, quinone 53.3 9.5 0.00033 32.1 3.4 34 180-213 4-45 (273)
256 2fqx_A Membrane lipoprotein TM 53.3 58 0.002 27.4 8.5 155 63-237 27-197 (318)
257 2jba_A Phosphate regulon trans 53.1 52 0.0018 22.5 8.9 109 51-173 3-118 (127)
258 1mb3_A Cell division response 52.8 52 0.0018 22.4 10.8 107 51-174 2-118 (124)
259 2ohh_A Type A flavoprotein FPR 52.7 18 0.00062 31.5 5.2 65 64-135 276-350 (404)
260 4a5o_A Bifunctional protein fo 52.5 20 0.00067 30.9 5.2 160 52-237 39-213 (286)
261 1rtt_A Conserved hypothetical 52.5 12 0.0004 29.4 3.6 58 180-238 8-82 (193)
262 3pdi_B Nitrogenase MOFE cofact 52.4 26 0.00088 31.9 6.4 155 50-212 169-347 (458)
263 1ykg_A SIR-FP, sulfite reducta 52.4 13 0.00044 28.6 3.8 36 100-135 54-100 (167)
264 3iwt_A 178AA long hypothetical 52.3 22 0.00074 27.7 5.2 49 62-114 42-93 (178)
265 3s2u_A UDP-N-acetylglucosamine 51.7 73 0.0025 27.4 9.0 12 50-61 180-191 (365)
266 3k4h_A Putative transcriptiona 51.7 22 0.00076 28.9 5.4 88 51-138 132-231 (292)
267 1pea_A Amidase operon; gene re 51.7 33 0.0011 29.3 6.8 123 101-236 74-205 (385)
268 3bil_A Probable LACI-family tr 51.6 44 0.0015 28.3 7.5 119 64-202 87-215 (348)
269 3i6i_A Putative leucoanthocyan 51.4 34 0.0012 29.0 6.7 78 47-125 7-110 (346)
270 3h75_A Periplasmic sugar-bindi 51.2 87 0.003 26.2 9.3 92 51-145 146-253 (350)
271 3gv0_A Transcriptional regulat 50.1 33 0.0011 28.0 6.2 94 50-145 127-234 (288)
272 3qvo_A NMRA family protein; st 50.0 92 0.0031 24.6 8.9 81 42-125 15-116 (236)
273 2a5l_A Trp repressor binding p 50.0 38 0.0013 26.1 6.3 59 180-238 7-81 (200)
274 3r1i_A Short-chain type dehydr 50.0 19 0.00066 29.9 4.8 93 23-123 9-105 (276)
275 3lkb_A Probable branched-chain 49.8 25 0.00085 30.1 5.6 125 101-236 74-206 (392)
276 3uug_A Multiple sugar-binding 49.8 51 0.0017 27.2 7.5 117 63-198 23-151 (330)
277 1rli_A Trp repressor binding p 49.6 9.2 0.00032 29.4 2.5 71 51-122 4-98 (184)
278 2amj_A Modulator of drug activ 49.6 8.6 0.00029 30.9 2.4 52 64-121 38-96 (204)
279 3p0r_A Azoreductase; structura 49.5 22 0.00074 28.5 4.9 59 180-238 6-102 (211)
280 3glv_A Lipopolysaccharide core 49.4 68 0.0023 23.8 7.5 87 62-160 18-118 (143)
281 2nm0_A Probable 3-oxacyl-(acyl 49.3 59 0.002 26.4 7.7 35 45-79 16-51 (253)
282 2q9u_A A-type flavoprotein; fl 49.2 84 0.0029 27.3 9.1 55 179-238 257-317 (414)
283 4gx0_A TRKA domain protein; me 49.1 58 0.002 29.9 8.3 113 51-172 349-475 (565)
284 2xok_G ATP synthase subunit ga 49.0 25 0.00085 30.5 5.4 64 102-173 104-185 (311)
285 2dr1_A PH1308 protein, 386AA l 48.7 1.1E+02 0.0037 25.6 9.6 74 163-238 80-156 (386)
286 1vjo_A Alanine--glyoxylate ami 48.7 67 0.0023 27.2 8.3 74 163-238 94-169 (393)
287 1lnq_A MTHK channels, potassiu 48.7 53 0.0018 27.9 7.5 110 51-170 116-242 (336)
288 3r6w_A FMN-dependent NADH-azor 48.7 9.3 0.00032 30.5 2.5 58 64-121 24-113 (212)
289 3e48_A Putative nucleoside-dip 48.4 1.1E+02 0.0037 24.8 12.5 73 51-126 1-98 (289)
290 3l6u_A ABC-type sugar transpor 48.4 20 0.00069 29.2 4.6 82 52-137 137-230 (293)
291 4hs4_A Chromate reductase; tri 47.9 14 0.00047 29.6 3.4 84 50-134 6-115 (199)
292 3nrc_A Enoyl-[acyl-carrier-pro 47.6 72 0.0024 26.1 8.0 86 45-135 21-112 (280)
293 2q9u_A A-type flavoprotein; fl 47.6 26 0.00089 30.7 5.5 78 51-135 257-348 (414)
294 3rfq_A Pterin-4-alpha-carbinol 47.6 23 0.00079 28.2 4.7 50 61-114 50-101 (185)
295 3eaf_A ABC transporter, substr 47.5 60 0.0021 27.7 7.8 124 100-237 74-208 (391)
296 3sg0_A Extracellular ligand-bi 47.5 71 0.0024 26.8 8.2 133 91-236 79-222 (386)
297 3n0w_A ABC branched chain amin 46.9 57 0.002 27.6 7.5 134 91-237 63-206 (379)
298 4ici_A Putative flavoprotein; 46.8 6.8 0.00023 30.6 1.3 34 99-135 84-124 (171)
299 3sx2_A Putative 3-ketoacyl-(ac 46.4 24 0.00083 28.9 4.9 36 44-79 7-43 (278)
300 2ywj_A Glutamine amidotransfer 46.4 34 0.0012 26.4 5.5 70 51-138 1-78 (186)
301 3fni_A Putative diflavin flavo 46.2 54 0.0018 24.8 6.5 13 226-238 54-66 (159)
302 3k1y_A Oxidoreductase; structu 46.2 13 0.00046 29.6 3.0 60 179-238 12-95 (191)
303 3sxp_A ADP-L-glycero-D-mannohe 46.0 1.3E+02 0.0046 25.2 11.2 34 46-79 6-42 (362)
304 3rht_A (gatase1)-like protein; 45.9 20 0.00069 30.2 4.2 52 179-237 5-59 (259)
305 3h5l_A Putative branched-chain 45.7 74 0.0025 27.4 8.1 82 49-133 163-251 (419)
306 3rpe_A MDAB, modulator of drug 45.6 11 0.00039 30.9 2.5 52 64-121 51-109 (218)
307 3f6p_A Transcriptional regulat 45.5 71 0.0024 21.9 12.5 106 50-174 2-116 (120)
308 3s99_A Basic membrane lipoprot 45.5 1.2E+02 0.0043 26.2 9.6 121 101-234 85-214 (356)
309 4imr_A 3-oxoacyl-(acyl-carrier 45.2 86 0.0029 25.7 8.1 86 46-135 29-118 (275)
310 3kcn_A Adenylate cyclase homol 45.1 82 0.0028 22.5 12.2 110 50-174 4-120 (151)
311 3d7l_A LIN1944 protein; APC893 45.0 38 0.0013 26.0 5.6 60 51-111 4-67 (202)
312 3i4f_A 3-oxoacyl-[acyl-carrier 45.0 63 0.0021 26.0 7.2 32 47-78 4-36 (264)
313 3b6i_A Flavoprotein WRBA; flav 44.4 38 0.0013 26.1 5.5 14 225-238 65-78 (198)
314 3g1w_A Sugar ABC transporter; 44.4 66 0.0023 26.2 7.3 81 64-144 147-232 (305)
315 2yxb_A Coenzyme B12-dependent 44.3 48 0.0016 25.4 6.0 56 178-239 18-80 (161)
316 2huf_A Alanine glyoxylate amin 44.3 1E+02 0.0034 26.0 8.7 60 177-238 93-154 (393)
317 3tnl_A Shikimate dehydrogenase 44.0 47 0.0016 28.6 6.4 33 45-77 149-182 (315)
318 4h15_A Short chain alcohol deh 44.0 25 0.00084 29.4 4.5 34 46-79 7-41 (261)
319 3ksm_A ABC-type sugar transpor 43.9 25 0.00087 28.1 4.5 86 50-137 127-223 (276)
320 2pjk_A 178AA long hypothetical 43.8 36 0.0012 26.8 5.2 49 62-114 42-93 (178)
321 4evq_A Putative ABC transporte 43.8 55 0.0019 27.5 6.9 85 49-136 150-240 (375)
322 3e8x_A Putative NAD-dependent 43.7 25 0.00084 28.0 4.3 35 45-79 16-51 (236)
323 2ch1_A 3-hydroxykynurenine tra 43.5 89 0.003 26.4 8.2 33 177-209 92-124 (396)
324 1eo1_A Hypothetical protein MT 43.5 37 0.0013 24.6 5.0 50 118-174 58-107 (124)
325 2v25_A Major cell-binding fact 43.5 57 0.0019 25.4 6.5 60 46-112 144-203 (259)
326 3dzz_A Putative pyridoxal 5'-p 43.5 1E+02 0.0035 25.9 8.6 73 49-124 108-192 (391)
327 3tb6_A Arabinose metabolism tr 43.4 19 0.00066 29.2 3.7 73 65-137 158-239 (298)
328 1e5d_A Rubredoxin\:oxygen oxid 43.3 1.3E+02 0.0043 25.9 9.3 56 178-238 252-313 (402)
329 2nv0_A Glutamine amidotransfer 43.3 40 0.0014 26.2 5.5 77 51-143 2-86 (196)
330 3phh_A Shikimate dehydrogenase 43.2 53 0.0018 27.7 6.5 139 70-239 31-183 (269)
331 3snr_A Extracellular ligand-bi 43.2 75 0.0026 26.3 7.6 85 49-136 134-225 (362)
332 2yxd_A Probable cobalt-precorr 42.9 97 0.0033 22.7 10.0 94 109-212 65-159 (183)
333 1y5e_A Molybdenum cofactor bio 42.8 30 0.001 26.8 4.5 49 62-114 33-84 (169)
334 2bgk_A Rhizome secoisolaricire 42.7 32 0.0011 28.0 5.0 36 44-79 10-46 (278)
335 1a4i_A Methylenetetrahydrofola 42.4 74 0.0025 27.4 7.3 162 51-237 38-217 (301)
336 3q9s_A DNA-binding response re 42.2 1.3E+02 0.0044 24.0 12.1 108 48-174 35-151 (249)
337 2dr1_A PH1308 protein, 386AA l 42.1 26 0.00088 29.6 4.4 75 49-124 94-175 (386)
338 3pxx_A Carveol dehydrogenase; 42.1 35 0.0012 28.0 5.1 35 45-79 5-40 (287)
339 1usg_A Leucine-specific bindin 42.1 1.4E+02 0.0049 24.4 9.3 125 101-236 68-201 (346)
340 3lkb_A Probable branched-chain 42.0 1.2E+02 0.0043 25.5 8.9 83 49-134 142-230 (392)
341 4eyg_A Twin-arginine transloca 41.9 66 0.0023 26.9 7.1 93 49-144 138-240 (368)
342 3qiv_A Short-chain dehydrogena 41.7 32 0.0011 27.6 4.8 35 45-79 4-39 (253)
343 3ilh_A Two component response 41.7 88 0.003 21.9 11.1 111 49-175 8-137 (146)
344 3l07_A Bifunctional protein fo 41.4 84 0.0029 26.8 7.5 162 51-237 37-213 (285)
345 3gem_A Short chain dehydrogena 41.1 24 0.00082 29.0 3.9 36 44-79 21-57 (260)
346 3ddh_A Putative haloacid dehal 41.0 34 0.0012 26.1 4.7 89 60-160 108-203 (234)
347 3ipc_A ABC transporter, substr 40.9 84 0.0029 26.1 7.5 134 91-237 60-202 (356)
348 1ycg_A Nitric oxide reductase; 40.8 24 0.00084 30.5 4.2 65 64-135 271-342 (398)
349 2ohh_A Type A flavoprotein FPR 40.6 89 0.003 26.9 7.8 56 178-238 256-317 (404)
350 4fn4_A Short chain dehydrogena 40.6 24 0.00082 29.4 3.9 149 47-209 4-187 (254)
351 3don_A Shikimate dehydrogenase 40.5 22 0.00074 30.2 3.6 152 62-239 15-186 (277)
352 4iin_A 3-ketoacyl-acyl carrier 40.2 32 0.0011 28.1 4.6 34 45-78 24-58 (271)
353 1e6u_A GDP-fucose synthetase; 40.1 22 0.00075 29.6 3.6 62 49-111 2-64 (321)
354 3iwt_A 178AA long hypothetical 40.0 53 0.0018 25.3 5.7 48 188-240 40-93 (178)
355 3pzy_A MOG; ssgcid, seattle st 39.8 26 0.00089 27.2 3.7 46 59-109 26-73 (164)
356 3p2o_A Bifunctional protein fo 39.8 84 0.0029 26.8 7.2 162 51-237 36-212 (285)
357 2gk4_A Conserved hypothetical 39.8 32 0.0011 28.5 4.4 31 49-79 2-49 (232)
358 4dik_A Flavoprotein; TM0755, e 39.6 46 0.0016 29.8 5.8 74 163-238 247-329 (410)
359 2yx6_A Hypothetical protein PH 39.4 33 0.0011 24.8 4.1 51 116-173 54-104 (121)
360 1ka9_H Imidazole glycerol phos 39.3 67 0.0023 25.1 6.3 47 51-112 3-50 (200)
361 2ae2_A Protein (tropinone redu 39.2 41 0.0014 27.3 5.1 34 46-79 5-39 (260)
362 4id3_A DNA repair protein REV1 39.2 47 0.0016 22.3 4.7 33 45-77 5-38 (92)
363 3u7r_A NADPH-dependent FMN red 39.1 37 0.0013 26.9 4.7 59 179-238 3-77 (190)
364 2vyc_A Biodegradative arginine 39.1 1.2E+02 0.0042 29.2 9.2 104 51-171 1-127 (755)
365 3vtz_A Glucose 1-dehydrogenase 39.0 34 0.0012 28.1 4.6 34 46-79 10-44 (269)
366 1p6q_A CHEY2; chemotaxis, sign 38.9 92 0.0031 21.3 11.1 107 50-173 6-123 (129)
367 2xdq_B Light-independent proto 38.8 37 0.0013 31.3 5.2 152 42-210 158-336 (511)
368 3hn0_A Nitrate transport prote 38.8 19 0.00064 30.1 2.9 114 102-237 34-152 (283)
369 2iuf_A Catalase; oxidoreductas 38.7 1.2E+02 0.004 29.3 8.7 92 44-145 523-648 (688)
370 1mkz_A Molybdenum cofactor bio 38.7 28 0.00095 27.2 3.8 49 62-114 30-81 (172)
371 1o13_A Probable NIFB protein; 38.5 33 0.0011 25.6 4.0 49 118-173 69-117 (136)
372 3is3_A 17BETA-hydroxysteroid d 38.5 39 0.0013 27.6 4.9 77 43-123 11-92 (270)
373 2dri_A D-ribose-binding protei 38.5 38 0.0013 27.3 4.8 83 51-137 124-217 (271)
374 1o5i_A 3-oxoacyl-(acyl carrier 38.4 38 0.0013 27.4 4.7 38 42-79 11-49 (249)
375 1jbe_A Chemotaxis protein CHEY 38.3 93 0.0032 21.2 12.5 107 50-173 4-121 (128)
376 3dii_A Short-chain dehydrogena 38.3 1.1E+02 0.0039 24.3 7.7 79 50-135 2-84 (247)
377 3r3s_A Oxidoreductase; structu 38.3 47 0.0016 27.7 5.4 77 44-123 43-124 (294)
378 3l3e_A DNA topoisomerase 2-bin 38.2 30 0.001 24.4 3.6 38 40-77 8-46 (107)
379 8abp_A L-arabinose-binding pro 38.2 53 0.0018 26.8 5.7 74 63-138 153-235 (306)
380 3e03_A Short chain dehydrogena 38.2 41 0.0014 27.6 5.0 88 46-135 2-99 (274)
381 3rot_A ABC sugar transporter, 38.1 35 0.0012 28.0 4.5 84 50-138 130-228 (297)
382 3ngx_A Bifunctional protein fo 38.1 50 0.0017 28.1 5.5 159 52-237 31-202 (276)
383 3c3m_A Response regulator rece 38.1 1E+02 0.0035 21.6 9.3 108 51-174 4-120 (138)
384 3o74_A Fructose transport syst 38.1 27 0.00093 27.9 3.8 45 93-137 170-217 (272)
385 3k31_A Enoyl-(acyl-carrier-pro 37.9 43 0.0015 28.0 5.1 87 45-135 25-117 (296)
386 3m3p_A Glutamine amido transfe 37.8 52 0.0018 27.3 5.5 53 178-237 3-57 (250)
387 3ijr_A Oxidoreductase, short c 37.7 41 0.0014 28.0 5.0 35 44-78 41-76 (291)
388 4gud_A Imidazole glycerol phos 37.7 76 0.0026 24.9 6.4 72 51-137 3-81 (211)
389 3pgx_A Carveol dehydrogenase; 37.7 40 0.0014 27.7 4.9 35 45-79 10-45 (280)
390 3qk7_A Transcriptional regulat 37.6 66 0.0022 26.2 6.2 73 65-137 148-225 (294)
391 3grk_A Enoyl-(acyl-carrier-pro 37.4 48 0.0016 27.6 5.3 90 42-135 23-118 (293)
392 3flh_A Uncharacterized protein 37.4 66 0.0022 23.0 5.5 40 163-203 57-99 (124)
393 3n74_A 3-ketoacyl-(acyl-carrie 37.2 42 0.0014 27.1 4.8 72 45-123 4-79 (261)
394 4g81_D Putative hexonate dehyd 37.1 30 0.001 28.9 3.9 31 47-77 6-37 (255)
395 3dhn_A NAD-dependent epimerase 37.1 1.4E+02 0.0049 23.0 10.3 59 50-111 4-76 (227)
396 3d02_A Putative LACI-type tran 37.0 61 0.0021 26.3 5.9 121 64-203 25-159 (303)
397 2rhc_B Actinorhodin polyketide 36.9 49 0.0017 27.2 5.3 33 47-79 19-52 (277)
398 3oid_A Enoyl-[acyl-carrier-pro 36.9 91 0.0031 25.2 6.9 80 49-135 3-91 (258)
399 3imf_A Short chain dehydrogena 36.7 38 0.0013 27.5 4.5 85 46-135 2-92 (257)
400 3uf0_A Short-chain dehydrogena 36.7 46 0.0016 27.4 5.1 86 45-135 26-115 (273)
401 3gfs_A FMN-dependent NADPH-azo 36.6 9.3 0.00032 29.4 0.6 75 60-134 14-102 (174)
402 3gyb_A Transcriptional regulat 36.6 47 0.0016 26.7 5.1 86 50-138 118-215 (280)
403 3kbq_A Protein TA0487; structu 36.6 32 0.0011 27.1 3.8 49 62-114 25-74 (172)
404 2pzm_A Putative nucleotide sug 36.6 35 0.0012 28.7 4.3 70 41-111 11-97 (330)
405 4dqx_A Probable oxidoreductase 36.4 45 0.0015 27.6 4.9 36 44-79 21-57 (277)
406 1dbw_A Transcriptional regulat 36.4 1E+02 0.0035 21.1 11.9 107 50-174 3-118 (126)
407 3rwb_A TPLDH, pyridoxal 4-dehy 36.4 46 0.0016 26.8 4.9 33 46-78 2-35 (247)
408 2wsb_A Galactitol dehydrogenas 36.3 50 0.0017 26.3 5.2 34 46-79 7-41 (254)
409 1fmc_A 7 alpha-hydroxysteroid 36.3 35 0.0012 27.3 4.1 34 46-79 7-41 (255)
410 1sb8_A WBPP; epimerase, 4-epim 36.2 1.1E+02 0.0037 25.6 7.6 32 48-79 25-57 (352)
411 3ej6_A Catalase-3; heme, hydro 36.1 2E+02 0.0068 27.7 9.8 90 46-145 533-646 (688)
412 3tpc_A Short chain alcohol deh 36.0 43 0.0015 27.0 4.7 34 46-79 3-37 (257)
413 2bkw_A Alanine-glyoxylate amin 36.0 36 0.0012 28.7 4.4 75 49-124 85-166 (385)
414 3l7o_A Ribose-5-phosphate isom 35.9 85 0.0029 25.8 6.5 53 96-155 12-68 (225)
415 3pdi_A Nitrogenase MOFE cofact 35.9 13 0.00044 34.2 1.5 140 60-210 216-364 (483)
416 1xdz_A Methyltransferase GIDB; 35.9 1.5E+02 0.005 23.5 8.0 93 109-210 102-202 (240)
417 3g89_A Ribosomal RNA small sub 35.9 1E+02 0.0036 25.0 7.1 92 110-210 113-212 (249)
418 1ja9_A 4HNR, 1,3,6,8-tetrahydr 35.8 42 0.0014 27.1 4.6 33 46-78 17-50 (274)
419 3op4_A 3-oxoacyl-[acyl-carrier 35.7 47 0.0016 26.8 4.9 33 46-78 5-38 (248)
420 2fn9_A Ribose ABC transporter, 35.7 31 0.0011 28.0 3.8 44 93-136 182-225 (290)
421 1g0o_A Trihydroxynaphthalene r 35.7 58 0.002 26.7 5.6 33 46-78 25-58 (283)
422 2ark_A Flavodoxin; FMN, struct 35.7 35 0.0012 26.4 3.9 10 228-237 52-61 (188)
423 3dzd_A Transcriptional regulat 35.5 2E+02 0.0069 24.8 9.3 104 51-172 1-113 (368)
424 3h7a_A Short chain dehydrogena 35.5 42 0.0014 27.2 4.5 74 47-124 4-81 (252)
425 3s55_A Putative short-chain de 35.4 45 0.0016 27.3 4.8 35 45-79 5-40 (281)
426 2q5c_A NTRC family transcripti 35.4 1.3E+02 0.0044 23.7 7.4 60 103-173 120-179 (196)
427 3u7i_A FMN-dependent NADH-azor 35.4 41 0.0014 27.3 4.4 59 180-238 6-104 (223)
428 2dwc_A PH0318, 433AA long hypo 35.4 56 0.0019 28.8 5.7 75 50-125 19-105 (433)
429 3hs3_A Ribose operon repressor 35.2 58 0.002 26.3 5.4 87 48-137 120-216 (277)
430 3grp_A 3-oxoacyl-(acyl carrier 35.1 47 0.0016 27.2 4.9 71 45-123 22-97 (266)
431 1o2d_A Alcohol dehydrogenase, 35.0 62 0.0021 28.3 5.9 53 178-233 40-103 (371)
432 3kke_A LACI family transcripti 35.0 53 0.0018 27.0 5.2 76 63-138 151-236 (303)
433 3lyl_A 3-oxoacyl-(acyl-carrier 35.0 44 0.0015 26.6 4.6 73 47-123 2-78 (247)
434 1lk5_A D-ribose-5-phosphate is 35.0 1.3E+02 0.0043 24.7 7.4 50 96-145 14-67 (229)
435 2h1q_A Hypothetical protein; Z 35.0 48 0.0016 28.1 4.9 111 48-174 139-254 (270)
436 3ucx_A Short chain dehydrogena 34.9 57 0.002 26.5 5.4 74 46-123 7-84 (264)
437 4hp8_A 2-deoxy-D-gluconate 3-d 34.8 41 0.0014 28.0 4.4 33 47-79 6-39 (247)
438 3evz_A Methyltransferase; NYSG 34.7 37 0.0013 26.7 4.1 46 165-210 159-206 (230)
439 3tzq_B Short-chain type dehydr 34.7 48 0.0016 27.2 4.8 72 46-123 7-81 (271)
440 4eso_A Putative oxidoreductase 34.6 48 0.0016 26.9 4.8 71 46-123 4-78 (255)
441 3uve_A Carveol dehydrogenase ( 34.6 50 0.0017 27.1 5.0 34 46-79 7-41 (286)
442 1uj6_A Ribose 5-phosphate isom 34.4 1.2E+02 0.0043 24.7 7.3 54 96-155 16-73 (227)
443 1d4a_A DT-diaphorase, quinone 34.3 25 0.00086 29.4 3.0 73 51-123 3-121 (273)
444 2hq1_A Glucose/ribitol dehydro 34.3 47 0.0016 26.4 4.6 33 47-79 2-35 (247)
445 1i3c_A Response regulator RCP1 34.2 1.2E+02 0.0043 21.5 12.1 110 50-173 8-133 (149)
446 3ai3_A NADPH-sorbose reductase 34.1 53 0.0018 26.6 5.0 33 47-79 4-37 (263)
447 3icc_A Putative 3-oxoacyl-(acy 34.1 48 0.0016 26.5 4.7 33 46-78 3-36 (255)
448 4e6p_A Probable sorbitol dehyd 34.1 50 0.0017 26.8 4.8 34 46-79 4-38 (259)
449 2d1y_A Hypothetical protein TT 34.0 51 0.0017 26.7 4.8 33 47-79 3-36 (256)
450 1tvm_A PTS system, galactitol- 33.7 1.1E+02 0.0038 21.8 6.2 52 178-237 21-78 (113)
451 3f6r_A Flavodoxin; FMN binding 33.7 89 0.0031 22.7 5.9 14 160-173 11-24 (148)
452 1zk4_A R-specific alcohol dehy 33.7 48 0.0016 26.4 4.6 32 47-78 3-35 (251)
453 3gvc_A Oxidoreductase, probabl 33.7 48 0.0016 27.4 4.7 34 46-79 25-59 (277)
454 1vl8_A Gluconate 5-dehydrogena 33.6 52 0.0018 26.9 4.9 36 43-78 14-50 (267)
455 4e3z_A Putative oxidoreductase 33.6 1.1E+02 0.0037 24.8 6.9 30 49-78 25-55 (272)
456 2x4g_A Nucleoside-diphosphate- 33.5 1.4E+02 0.0047 24.7 7.7 60 49-111 12-86 (342)
457 2h3h_A Sugar ABC transporter, 33.5 55 0.0019 27.0 5.1 84 51-138 124-219 (313)
458 3awd_A GOX2181, putative polyo 33.4 51 0.0017 26.4 4.7 34 46-79 9-43 (260)
459 4egf_A L-xylulose reductase; s 33.3 46 0.0016 27.1 4.5 34 45-78 15-49 (266)
460 2yvq_A Carbamoyl-phosphate syn 33.3 37 0.0013 25.6 3.6 68 41-110 17-104 (143)
461 3crn_A Response regulator rece 33.2 1.2E+02 0.0041 21.0 10.4 106 50-173 3-117 (132)
462 2ew8_A (S)-1-phenylethanol deh 33.2 53 0.0018 26.4 4.8 33 47-79 4-37 (249)
463 3ha2_A NADPH-quinone reductase 33.2 73 0.0025 24.9 5.4 41 193-238 21-61 (177)
464 2zat_A Dehydrogenase/reductase 33.1 49 0.0017 26.7 4.6 33 46-78 10-43 (260)
465 2pd6_A Estradiol 17-beta-dehyd 33.1 57 0.002 26.1 5.0 33 47-79 4-37 (264)
466 3f1l_A Uncharacterized oxidore 33.1 58 0.002 26.3 5.0 74 46-123 8-88 (252)
467 3tsc_A Putative oxidoreductase 33.0 53 0.0018 26.9 4.9 34 46-79 7-41 (277)
468 3lec_A NADB-rossmann superfami 33.0 1.3E+02 0.0043 24.6 7.1 30 179-208 118-147 (230)
469 1obo_A Flavodoxin; electron tr 33.0 49 0.0017 24.8 4.3 37 99-135 43-87 (169)
470 3nnk_A Ureidoglycine-glyoxylat 33.0 1.4E+02 0.0048 25.2 7.8 33 177-209 87-119 (411)
471 1uzm_A 3-oxoacyl-[acyl-carrier 33.0 53 0.0018 26.4 4.8 34 46-79 11-45 (247)
472 3svl_A Protein YIEF; E. coli C 32.9 26 0.00088 27.7 2.7 17 222-238 66-82 (193)
473 1o1y_A Conserved hypothetical 32.9 43 0.0015 27.3 4.2 92 50-156 12-115 (239)
474 2o23_A HADH2 protein; HSD17B10 32.9 55 0.0019 26.2 4.9 34 46-79 8-42 (265)
475 4b4u_A Bifunctional protein fo 32.8 74 0.0025 27.5 5.8 79 21-109 150-229 (303)
476 3n75_A LDC, lysine decarboxyla 32.8 1E+02 0.0035 29.7 7.4 67 62-137 19-85 (715)
477 3uxy_A Short-chain dehydrogena 32.7 42 0.0014 27.6 4.1 35 45-79 23-58 (266)
478 1uls_A Putative 3-oxoacyl-acyl 32.7 56 0.0019 26.2 4.9 33 47-79 2-35 (245)
479 1iy8_A Levodione reductase; ox 32.6 52 0.0018 26.7 4.7 34 46-79 9-43 (267)
480 2f8m_A Ribose 5-phosphate isom 32.6 83 0.0028 26.2 5.9 51 99-155 24-78 (244)
481 3kvo_A Hydroxysteroid dehydrog 32.5 52 0.0018 28.4 4.9 37 43-79 38-75 (346)
482 3ksx_A Nitrate transport prote 32.5 74 0.0025 26.4 5.8 67 45-116 126-192 (324)
483 1jx6_A LUXP protein; protein-l 32.5 95 0.0032 25.8 6.5 86 50-138 175-270 (342)
484 1czn_A Flavodoxin; FMN binding 32.4 21 0.00073 27.0 2.1 37 99-135 43-87 (169)
485 1nff_A Putative oxidoreductase 32.4 58 0.002 26.4 4.9 32 47-78 4-36 (260)
486 1gy8_A UDP-galactose 4-epimera 32.4 2.3E+02 0.0078 23.9 11.1 30 50-79 2-33 (397)
487 1b0a_A Protein (fold bifunctio 32.4 78 0.0027 27.1 5.8 161 51-237 36-211 (288)
488 3kwm_A Ribose-5-phosphate isom 32.3 1.1E+02 0.0039 25.0 6.6 53 96-155 20-73 (224)
489 2pju_A Propionate catabolism o 32.3 2E+02 0.0068 23.4 8.2 57 105-173 134-190 (225)
490 2pjm_A Ribose-5-phosphate isom 32.2 71 0.0024 26.3 5.4 54 96-155 14-70 (226)
491 2z9v_A Aspartate aminotransfer 32.2 34 0.0012 29.0 3.6 75 49-124 82-163 (392)
492 3ged_A Short-chain dehydrogena 32.2 1.9E+02 0.0065 23.7 8.1 65 50-123 2-71 (247)
493 3v2g_A 3-oxoacyl-[acyl-carrier 32.1 60 0.0021 26.6 5.0 76 45-123 26-105 (271)
494 3svt_A Short-chain type dehydr 32.1 54 0.0018 26.9 4.7 35 45-79 6-41 (281)
495 3u7q_B Nitrogenase molybdenum- 32.0 38 0.0013 31.4 4.1 142 63-209 238-395 (523)
496 4dmm_A 3-oxoacyl-[acyl-carrier 32.0 49 0.0017 27.1 4.5 34 45-78 23-57 (269)
497 3o26_A Salutaridine reductase; 32.0 43 0.0015 27.5 4.1 87 45-135 7-100 (311)
498 3ftp_A 3-oxoacyl-[acyl-carrier 31.9 51 0.0018 27.1 4.6 34 45-78 23-57 (270)
499 3t7c_A Carveol dehydrogenase; 31.9 58 0.002 27.1 5.0 34 46-79 24-58 (299)
500 3ksu_A 3-oxoacyl-acyl carrier 31.9 47 0.0016 27.1 4.3 35 45-79 6-41 (262)
No 1
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=100.00 E-value=6.2e-39 Score=277.61 Aligned_cols=190 Identities=19% Similarity=0.199 Sum_probs=167.0
Q ss_pred CCCCCCeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcC
Q 026235 46 ASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAG 125 (241)
Q Consensus 46 ~~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~ 125 (241)
.||.||+||+|||..+.+.+.+.|+++|++++.+|+|++++.++...+++.+.+++.||||||||+|+|++|++.+...+
T Consensus 2 ~~L~g~~vlvtRp~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~l~~~l~~l~~~d~vifTS~~aV~~~~~~l~~~~ 81 (254)
T 4es6_A 2 SHMSGWRLLLTRPDEECAALAASLGEAGVHSSSLPLLAIDPLEETPEQRTLMLDLDRYCAVVVVSKPAARLGLERLDRYW 81 (254)
T ss_dssp ----CCEEEECSCHHHHHHHHHHHHHTTCEEEECCSCEEEECCCCHHHHHHHHTGGGCSEEEECSHHHHHHHHHHHHHHC
T ss_pred CCCCCCEEEEeCChHHhHHHHHHHHHCCCcEEEeCCEEEeeCcChHHHHHHHHhccCCCEEEEECHHHHHHHHHHHHHhC
Confidence 57999999999999889999999999999999999999999887667777777788999999999999999999987654
Q ss_pred C--CCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhh--h-CCCCccEEEEEccCCCchhHHHHHHhC
Q 026235 126 T--PNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP--K-NGKKKCTVLYPASAKASNEIEEGLSNR 200 (241)
Q Consensus 126 ~--~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~--~-~~~~~~~iL~~~g~~~~~~L~~~L~~~ 200 (241)
. ++++++|||++|+++|+++ |+.++++|+.+++++|++.+. + ....+++||++||+.++++|.+.|+++
T Consensus 82 ~~~~~~~i~aVG~~Ta~~L~~~------G~~~~~~~~~~~~e~L~~~l~~~~~~~~~~~~vL~~rg~~~r~~L~~~L~~~ 155 (254)
T 4es6_A 82 PQPPQQTWCSVGAATAAILEAY------GLDVTYPEQGDDSEALLALPAFQDSLRVHDPKVLIMRGEGGREFLAERLRGQ 155 (254)
T ss_dssp SSCCSCEEEESSHHHHHHHHHH------TCCEECCSSCCSHHHHHTCHHHHHHTCSSSCEEEEEECSSCCCHHHHHHHHT
T ss_pred CCcccCEEEEECHHHHHHHHHc------CCCcccCCCCCCHHHHHHhHhhcccccCCCCEEEEEcCCccHHHHHHHHHHC
Confidence 3 4589999999999999999 999999998899999999987 3 234678999999999999999999999
Q ss_pred CCeeeEeeeeeeecCCCChHHHHHHc--CCCCEEEEECCccCC
Q 026235 201 GFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVR 241 (241)
Q Consensus 201 G~~V~~~~vY~~~~~~~~~~~~~~~l--~~id~IvFtSps~v~ 241 (241)
|++|.++.+|++.+++....++.+.+ +.+|+|+||||++|+
T Consensus 156 G~~v~~~~vY~~~~~~~~~~~~~~~l~~~~~d~v~ftS~s~v~ 198 (254)
T 4es6_A 156 GVQVDYLPLYRRRAPDYPAGELLARVRAERLNGLVVSSGQGLQ 198 (254)
T ss_dssp TCEEEEEECEEEECCCCCTTHHHHHHHHTTCCEEECCSHHHHH
T ss_pred CCEEEEEeEEEeeCCCCCHHHHHHHHHhCCCCEEEEcCHHHHH
Confidence 99999999999999887655554444 689999999999874
No 2
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen III synthase, HMB, lyase; 2.50A {Pseudomonas syringae PV}
Probab=100.00 E-value=2e-38 Score=277.13 Aligned_cols=192 Identities=21% Similarity=0.218 Sum_probs=160.2
Q ss_pred cCCCCCCCeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHh
Q 026235 44 ASASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE 123 (241)
Q Consensus 44 ~~~~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~ 123 (241)
-+.++.|++||||||..+.+.+.+.|+++|++++.+|+|++++.++...+++.+..+..||||||||+|||++|++.+..
T Consensus 8 ~~~~~~g~~IlvTRp~~~a~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~l~~~l~~l~~~d~vifTS~naV~~~~~~l~~ 87 (269)
T 3re1_A 8 HSMDMSAWRLLLTRPAEESAALARVLADAGIFSSSLPLLETEPLPLTPAQRSIIFELLNYSAVIVVSKPAARLAIELIDE 87 (269)
T ss_dssp -----CCCEEEECSCHHHHHHHHHHHHTTTCEEEECCCCEEEECCCHHHHHHHHHTGGGSSEEEECSHHHHHHHHHHHHH
T ss_pred cccccCCCEEEEeCChHHHHHHHHHHHHCCCCEEEcCCEEEecCCCcHHHHHHHHhccCCCEEEEECHHHHHHHHHHHHH
Confidence 35678899999999999999999999999999999999999998776677777877889999999999999999999876
Q ss_pred cCC--CCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhh--h-CCCCccEEEEEccCCCchhHHHHHH
Q 026235 124 AGT--PNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP--K-NGKKKCTVLYPASAKASNEIEEGLS 198 (241)
Q Consensus 124 ~~~--~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~--~-~~~~~~~iL~~~g~~~~~~L~~~L~ 198 (241)
.+. ++++++|||++|+++|+++ |+.++++|+.+++++|++.+. + ....+++||++||+.++++|.+.|+
T Consensus 88 ~~~~~~~~~i~aVG~~Ta~aL~~~------G~~~~~~~~~~~~e~L~~~l~l~~~~~~~g~~vLi~rg~~~r~~L~~~L~ 161 (269)
T 3re1_A 88 VWPQPPMQPWFSVGSATGQILLDY------GLDASWPEQGDDSEALLDHPRLKQAIAVPGSRVLIMRGNEGRELLAEQLR 161 (269)
T ss_dssp HCSSCCCSCEEESSHHHHHHHHHT------TCCEECC-------CGGGCHHHHHHHCSSSCEEEEEECSSCCCHHHHHHH
T ss_pred hCCCcccCEEEEECHHHHHHHHHc------CCCcccCCCCCCHHHHHHhhhhcccccCCCCEEEEEccCccHHHHHHHHH
Confidence 543 3589999999999999999 999999988899999999886 3 2346789999999999999999999
Q ss_pred hCCCeeeEeeeeeeecCCCChHHHHHHc--CCCCEEEEECCccCC
Q 026235 199 NRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVR 241 (241)
Q Consensus 199 ~~G~~V~~~~vY~~~~~~~~~~~~~~~l--~~id~IvFtSps~v~ 241 (241)
++|++|.++.+|++++++.....+.+.+ +.+|+|+||||++|+
T Consensus 162 ~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~~~d~v~ftS~s~v~ 206 (269)
T 3re1_A 162 ERGVGVDYLPLYRRYLPQHAPGTLLQRVEVERLNGLVVSSGQGFE 206 (269)
T ss_dssp HTTCEEEEEECEEEECCCCCTTTTHHHHHHTTCCEEECSSHHHHT
T ss_pred HCCCEEEEEeEEEEECCCCCHHHHHHHHHcCCCCEEEEcCHHHHH
Confidence 9999999999999999876554443333 689999999999875
No 3
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=100.00 E-value=1.8e-37 Score=266.20 Aligned_cols=182 Identities=21% Similarity=0.205 Sum_probs=158.6
Q ss_pred CCeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCCCCc
Q 026235 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNV 129 (241)
Q Consensus 50 g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~ 129 (241)
||+||+|||..+.+.+.+.|+++|+++..+|+|++++.++.+. .+..+++||||||||+|||++|++.+.. .++++
T Consensus 1 G~~vlvtRp~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~---~~~~l~~~d~viftS~~aV~~~~~~l~~-~l~~~ 76 (240)
T 3mw8_A 1 GMKLLLTRPEGKNAAMASALDALAIPYLVEPLLSVEAAAVTQA---QLDELSRADILIFISTSAVSFATPWLKD-QWPKA 76 (240)
T ss_dssp CCCEEECSCTTSCHHHHHHHHHHTCCEEECCSCEEEECCCCHH---HHHHHTTCSEEEECSHHHHHHHHHHHTT-CCCSS
T ss_pred CCEEEEeCChHHhHHHHHHHHHCCCcEEEeCcEEEeccccHHH---HHHHhcCCCEEEEECHHHHHHHHHHHHh-hCcCC
Confidence 7999999999999999999999999999999999999865432 3334578999999999999999998763 46679
Q ss_pred EEEEeCHHHHHHHHHhhhccCCCCceeecCCCC-CHHHHHHHhhhCCCCccEEEEEccCCCchhHHHHHHhCCCeeeEee
Q 026235 130 RIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLN 208 (241)
Q Consensus 130 ~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~-t~e~L~~~l~~~~~~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~~~ 208 (241)
+++|||++|+++|+++ |+.++++|+.+ ++|+|++.+......++++|++||+.++++|.+.|+++|++|.++.
T Consensus 77 ~~~aVG~~Ta~~L~~~------G~~~~~~p~~~~~~e~L~~~~~~~~~~g~~vL~~rg~~~r~~l~~~L~~~G~~v~~~~ 150 (240)
T 3mw8_A 77 TYYAVGDATADALALQ------GITAERSPADSQATEGLLTLPSLEQVSGKQIVIVRGKGGREAMADGLRLRGANVSYLE 150 (240)
T ss_dssp EEEESSHHHHHHHHHT------TCCCEECC---CCGGGGGGCGGGTCCTTCEEEEEEESSSCCHHHHHHHHTTCEEEEEE
T ss_pred eEEEECHHHHHHHHHc------CCCCccCCCCcCCHHHHHHhhhhccCCCCEEEEEeCCCcHHHHHHHHHHCCCEEEEEE
Confidence 9999999999999999 99999999887 9999999876544568999999999999999999999999999999
Q ss_pred eeeeecCCCChHHHHHHc--CCCCEEEEECCccCC
Q 026235 209 TYTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVR 241 (241)
Q Consensus 209 vY~~~~~~~~~~~~~~~l--~~id~IvFtSps~v~ 241 (241)
+|++.+.+....++.+.+ +.+|+|+||||++|+
T Consensus 151 ~Y~~~~~~~~~~~~~~~l~~~~~d~v~ftS~s~v~ 185 (240)
T 3mw8_A 151 VYQRACPPLDAPASVSRWQSFGIDTIVVTSGEVLE 185 (240)
T ss_dssp EEEEECCCCCHHHHHHHHHHHTCCEEECCSHHHHH
T ss_pred EEEeeCCCCCHHHHHHHHHhCCCCEEEEcCHHHHH
Confidence 999999887666555444 589999999999874
No 4
>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porph structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} PDB: 1wd7_A 1wcx_A
Probab=100.00 E-value=1.8e-36 Score=262.51 Aligned_cols=184 Identities=18% Similarity=0.128 Sum_probs=156.7
Q ss_pred CCCCCCCeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcC-CCccEEEEeCHHHHHHHHHHHHh
Q 026235 45 SASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD-TIFDWIIITSPEAGSVFLEAWKE 123 (241)
Q Consensus 45 ~~~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l-~~~d~IiFTS~~aV~~f~~~l~~ 123 (241)
.+|+.|++||+||+.. .+.+.+.|+++|++++.+|+|++++. +.+.+...+.++ +.||||||||+|+|++|++.+.+
T Consensus 3 ~~~l~g~~vlvtr~~~-~~~l~~~L~~~G~~~~~~P~i~i~~~-~~~~l~~~~~~l~~~~d~iiftS~~aV~~~~~~l~~ 80 (261)
T 1wcw_A 3 RLEEDAVRVAYAGLRR-KEAFKALAEKLGFTPLLFPVQATEKV-PVPEYRDQVRALAQGVDLFLATTGVGVRDLLEAGKA 80 (261)
T ss_dssp -----CCEEEECCSTT-HHHHHHHHHHTTCEEEECCCEEEEEC-CGGGGHHHHHHHHTCCSEEEECCHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCc-hHHHHHHHHHCCCcEEEeccEEEecC-CHHHHHHHHHhhccCCCEEEEeCHHHHHHHHHHHHH
Confidence 4789999999999997 89999999999999999999999998 666666666666 58999999999999999999877
Q ss_pred cCCC------CcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCCCCcc-EEEEEccCCCchhHHHH
Q 026235 124 AGTP------NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKC-TVLYPASAKASNEIEEG 196 (241)
Q Consensus 124 ~~~~------~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~~~~~-~iL~~~g~~~~~~L~~~ 196 (241)
.+.+ +++++|||++|+++|+++ |+.++++| .+++++|++.|.+ ++ +||++||+.+++.|.+.
T Consensus 81 ~~~~~~~~l~~~~i~avG~~Ta~~l~~~------G~~~~~~p-~~~~e~L~~~l~~----g~~~vL~~r~~~~~~~L~~~ 149 (261)
T 1wcw_A 81 LGLDLEGPLAKAFRLARGAKAARALKEA------GLPPHAVG-DGTSKSLLPLLPQ----GRGVAALQLYGKPLPLLENA 149 (261)
T ss_dssp TTCCCHHHHHHSEEEESSHHHHHHHHHT------TCCCSEEC-SSSHHHHGGGSCC----CCEEEEEECCSSCCHHHHHH
T ss_pred hCchHHHHhcCCeEEEECHHHHHHHHHc------CCCCCccc-CccHHHHHHHHHc----CCceEEEEccCcccHHHHHH
Confidence 6543 589999999999999999 99999999 8999999998865 68 99999999999999999
Q ss_pred HHhCCCeeeEeeeeeeecCCCChHHHHHHc--CCCCEEEEECCccCC
Q 026235 197 LSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVR 241 (241)
Q Consensus 197 L~~~G~~V~~~~vY~~~~~~~~~~~~~~~l--~~id~IvFtSps~v~ 241 (241)
|+++|++|.++.+|++.+......++.+.+ +.+|+|+||||++|+
T Consensus 150 L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l~~~~~d~v~ftS~~~v~ 196 (261)
T 1wcw_A 150 LAERGYRVLPLMPYRHLPDPEGILRLEEALLRGEVDALAFVAAIQVE 196 (261)
T ss_dssp HHHTTEEEEEECSEEEEECHHHHHHHHHHHHHTCCSEEEECSHHHHH
T ss_pred HHHCCCEEEEEeeEEEecCCccHHHHHHHHHcCCCCEEEEECHHHHH
Confidence 999999999999999995432223333334 689999999999874
No 5
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=100.00 E-value=3.1e-36 Score=265.13 Aligned_cols=192 Identities=17% Similarity=0.223 Sum_probs=159.5
Q ss_pred cccCCCCCCCeEEEeCCC-CCh---HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHH
Q 026235 42 TSASASNSNPKVVVTRER-GKN---GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVF 117 (241)
Q Consensus 42 ~~~~~~l~g~~VLitR~~-~~~---~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f 117 (241)
.+.+.++.|++|++||+. .+. +.+.+.|+++|++++.+|++++++.+ .+.+...+..+..||||||||+|||++|
T Consensus 13 ~~~~~~l~g~~vlvtr~~~~~~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~-~~~l~~~l~~~~~~d~lifTS~naV~~~ 91 (286)
T 1jr2_A 13 SSGHIEGRHMKVLLLKDAKEDDCGQDPYIRELGLYGLEATLIPVLSFEFLS-LPSFSEKLSHPEDYGGLIFTSPRAVEAA 91 (286)
T ss_dssp ---------CEEEEEESSCCCBTTBCHHHHHHHTTTCEEEEEECEEEEECC-HHHHHHHHTCGGGCSEEEECCHHHHHHH
T ss_pred cccchhhcCCEEEEEcCCCCCCCCCcHHHHHHHHCCCceEEEeeEEEecCC-HHHHHHHHhCcccccEEEEeCHHHHHHH
Confidence 467889999999999997 667 99999999999999999999999863 4556666666789999999999999999
Q ss_pred HHHHHhcCC------------CCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEc
Q 026235 118 LEAWKEAGT------------PNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPA 185 (241)
Q Consensus 118 ~~~l~~~~~------------~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~~~~~~iL~~~ 185 (241)
++.+.+.+. .+++++|||++|+++|+++ |+.+ ++|+.+++++|++.+......+++||++|
T Consensus 92 ~~~l~~~~~~~~~~~d~~~~l~~~~i~aVG~~Ta~aL~~~------G~~~-~~p~~~~ae~L~~~l~~~~~~g~~vLi~r 164 (286)
T 1jr2_A 92 ELCLEQNNKTEVWERSLKEKWNAKSVYVVGNATASLVSKI------GLDT-EGETCGNAEKLAEYICSRESSALPLLFPC 164 (286)
T ss_dssp HHHHHHTTCHHHHHHHTHHHHHHSEEEECSHHHHHHHHHT------TCCC-SCCSCSSHHHHHHHHHTSCCCSSCEEEEE
T ss_pred HHHHHhccccccchhhHHHHhccCcEEEECHHHHHHHHHc------CCCc-CCCCccCHHHHHHHHHhcccCCCeEEEEC
Confidence 998876542 3689999999999999999 9998 78889999999999987655678999999
Q ss_pred cCCCchhHHHHHHhCCCeeeEeeeeeeecCCCChHHHHHHc---CCCCEEEEECCccCC
Q 026235 186 SAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA---LSIPVVAVASPSAVR 241 (241)
Q Consensus 186 g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~l---~~id~IvFtSps~v~ 241 (241)
|+.+++.|.+.|+++|++|.++.+|++.+.+.....+.+.+ +.+|+|+||||++|+
T Consensus 165 g~~~r~~L~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l~~~~~~d~v~ftS~~~v~ 223 (286)
T 1jr2_A 165 GNLKREILPKALKDKGIAMESITVYQTVAHPGIQGNLNSYYSQQGVPASITFFSPSGLT 223 (286)
T ss_dssp SCGGGCCHHHHHHTTTCCEEEEECEEEEECTTHHHHHHHHHHHHCSCSEEEESSHHHHH
T ss_pred ChhhHHHHHHHHHHCCCeeEEEEEEEEeeCCCcHHHHHHHHHhCCCCCEEEEEChHHHH
Confidence 99999999999999999999999999998776443443333 689999999999874
No 6
>3d8t_A Uroporphyrinogen-III synthase; heme biosynthesis, lyase; 1.60A {Thermus thermophilus} PDB: 3d8r_A 3d8s_A 3d8n_A
Probab=100.00 E-value=1.9e-36 Score=266.71 Aligned_cols=184 Identities=17% Similarity=0.122 Sum_probs=156.5
Q ss_pred CCCCCCCeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcC-CCccEEEEeCHHHHHHHHHHHHh
Q 026235 45 SASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD-TIFDWIIITSPEAGSVFLEAWKE 123 (241)
Q Consensus 45 ~~~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l-~~~d~IiFTS~~aV~~f~~~l~~ 123 (241)
.+|+.|++||+||+.. .+.+.+.|+++|++++.+|+|++++. +.+.+.+.+.++ +.||||||||+|+|++|++.+.+
T Consensus 28 ~~pL~G~~VlvtR~~~-~~~l~~~L~~~G~~v~~~P~i~i~~~-~~~~l~~~l~~l~~~~d~lifTS~naV~~~~~~l~~ 105 (286)
T 3d8t_A 28 GIDPFTMRIAYAGLRR-KEEFKALAEKLGFTPLLFPVQATEKV-PVPEYRDQVRELAQGVDLFLATTGVGVRDLLEAGKA 105 (286)
T ss_dssp -----CCEEEECCSSC-HHHHHHHHHHHTCEEEECCCEEEEEE-ECTTHHHHHHHHTTCCSEEEECCHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCc-hHHHHHHHHHCCCeEEEeeeEEEecC-CHHHHHHHHHhhccCCCEEEEECHHHHHHHHHHHHH
Confidence 5789999999999997 89999999999999999999999987 555666666666 47999999999999999999887
Q ss_pred cCCC------CcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCCCCcc-EEEEEccCCCchhHHHH
Q 026235 124 AGTP------NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKC-TVLYPASAKASNEIEEG 196 (241)
Q Consensus 124 ~~~~------~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~~~~~-~iL~~~g~~~~~~L~~~ 196 (241)
.+.+ +++++|||++|+++|+++ |+.++++| .+++++|++.|.+ ++ +||++||+.+++.|.+.
T Consensus 106 ~~~~~~~~l~~~~i~aVG~~Ta~aL~~~------G~~~~~~p-~~~~e~L~~~l~~----g~~~vLi~r~~~~~~~L~~~ 174 (286)
T 3d8t_A 106 LGLDLEGPLAKAFRLARGAKAARALKEA------GLPPHAVG-DGTSKSLLPLLPQ----GRGVAALQLYGKPLPLLENA 174 (286)
T ss_dssp TTCCCHHHHHHSEEEESSHHHHHHHHHT------TCCCSEEC-SSSGGGGGGGCCC----CCSEEEEECSSSCCHHHHHH
T ss_pred cCchHHHHhcCCeEEEECHHHHHHHHHc------CCCccccc-cccHHHHHHHHHc----CCceEEEEccCcccHHHHHH
Confidence 6543 689999999999999999 99999999 8999999998865 68 99999999999999999
Q ss_pred HHhCCCeeeEeeeeeeecCCCChHHHHHHc--CCCCEEEEECCccCC
Q 026235 197 LSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVR 241 (241)
Q Consensus 197 L~~~G~~V~~~~vY~~~~~~~~~~~~~~~l--~~id~IvFtSps~v~ 241 (241)
|+++|++|.++.+|++++......++.+.+ +.+|+|+|||+++|+
T Consensus 175 L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l~~~~~d~v~FtS~~~v~ 221 (286)
T 3d8t_A 175 LAERGYRVLPLMPYRHLPDPEGILRLEEAVLRGEVDALAFVAAIQVE 221 (286)
T ss_dssp HHHTTCEEEEECSEEEEECHHHHHHHHHHHHTTCCSEEEESSHHHHH
T ss_pred HHHCCCEEEEEEEEEEecCcccHHHHHHHHHcCCCCEEEEECHHHHH
Confidence 999999999999999995432223344444 689999999999874
No 7
>3p9z_A Uroporphyrinogen III cosynthase (HEMD); MCSG, PSI2, structural genomics, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.10A {Helicobacter pylori}
Probab=99.96 E-value=2.3e-29 Score=214.97 Aligned_cols=152 Identities=21% Similarity=0.193 Sum_probs=122.9
Q ss_pred cEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcC----CCCcEEEEeCHHHHHHHHHhhhccC
Q 026235 75 DCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAG----TPNVRIGVVGAGTASIFEEVIQSSK 150 (241)
Q Consensus 75 ~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~----~~~~~i~aIG~~Ta~~L~~~~~~~~ 150 (241)
.++.+|+++|++.+.. .++++||||||||+|||++|++.+.+.+ +.+++++|||++|+++|+++
T Consensus 17 ~~~~~Pll~I~~~~~~-------~~l~~~d~lifTS~naV~~~~~~l~~~~~~~~l~~~~i~aVG~~Ta~aL~~~----- 84 (229)
T 3p9z_A 17 PYKTLILNEFCYYPLE-------LDPTPFNALIFTSKNAVFSLLETLKNSPKLKMLQNIPAYALSEPTAKTLQDH----- 84 (229)
T ss_dssp TSEEECCEEEEECCCC-------SCCTTCSEEEESCHHHHHHHHHHTTTCHHHHHHHTSCEEESSHHHHHHHHHT-----
T ss_pred CceeeceeeEEecccc-------CCcCcCCEEEEECHHHHHHHHHHHHhccchHHHcCCcEEEECHHHHHHHHHc-----
Confidence 6888999999998652 2678999999999999999998875322 34789999999999999999
Q ss_pred CCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEccCCCchhHHHHHHhCCCeeeEeeeeeeecCCCChHHHHHHc--CC
Q 026235 151 CSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LS 228 (241)
Q Consensus 151 ~Gi~~~~~p~~~t~e~L~~~l~~~~~~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~l--~~ 228 (241)
|+.++++|+.+++++|++.|.+.. .++++|++||+.++++|.+.|+++|++|.++.+|++.+.+... +..+.+ +.
T Consensus 85 -G~~~~~~p~~~~~e~L~~~l~~~~-~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~-~~~~~l~~~~ 161 (229)
T 3p9z_A 85 -HFKVAFMGEKAHGKEFVQEIFPLL-EKKSVLYLRAKEIVSSLDTILLEHGIDFKQAVVYENKLKHLTL-SEQNALKPKE 161 (229)
T ss_dssp -TCCBCCCCC---------CCHHHH-TTCEEEEEEESSCSSCHHHHHHHTTCEEEEEEEEEEEECCCCH-HHHHHHSCCT
T ss_pred -CCCeeecCCcccHHHHHHHHHhhC-CCCEEEEECCccchHHHHHHHHHCCCeEEEEEEEEeeCCCccH-HHHHHHhcCC
Confidence 999999999999999999887643 4789999999999999999999999999999999999988654 334444 68
Q ss_pred CCEEEEECCccCC
Q 026235 229 IPVVAVASPSAVR 241 (241)
Q Consensus 229 id~IvFtSps~v~ 241 (241)
+|+|+||||++|+
T Consensus 162 ~d~v~ftS~s~v~ 174 (229)
T 3p9z_A 162 KSILIFTAISHAK 174 (229)
T ss_dssp TCEEEECSHHHHH
T ss_pred CeEEEEECHHHHH
Confidence 9999999999874
No 8
>3p9z_A Uroporphyrinogen III cosynthase (HEMD); MCSG, PSI2, structural genomics, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.10A {Helicobacter pylori}
Probab=99.77 E-value=2.8e-18 Score=146.17 Aligned_cols=117 Identities=16% Similarity=0.059 Sum_probs=103.2
Q ss_pred CCCCeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCCC
Q 026235 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTP 127 (241)
Q Consensus 48 l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~ 127 (241)
+.|++||++|+..+++.+.+.|+++|++|..+|+|++++.+......+.+ ..+.+|||+|||+++|++|++.+. ...
T Consensus 108 ~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~l-~~~~~d~v~ftS~s~v~~~~~~~~--~~~ 184 (229)
T 3p9z_A 108 LEKKSVLYLRAKEIVSSLDTILLEHGIDFKQAVVYENKLKHLTLSEQNAL-KPKEKSILIFTAISHAKAFLHYFE--FLE 184 (229)
T ss_dssp HTTCEEEEEEESSCSSCHHHHHHHTTCEEEEEEEEEEEECCCCHHHHHHH-SCCTTCEEEECSHHHHHHHHHHSC--CCT
T ss_pred CCCCEEEEECCccchHHHHHHHHHCCCeEEEEEEEEeeCCCccHHHHHHH-hcCCCeEEEEECHHHHHHHHHHhC--ccc
Confidence 46899999999999999999999999999999999999977654455555 457899999999999999999763 245
Q ss_pred CcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhC
Q 026235 128 NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (241)
Q Consensus 128 ~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~ 174 (241)
+++++|||+.|+++++++ |++++ +|+.++.++|++.+.+.
T Consensus 185 ~~~~~aIG~~Ta~~l~~~------G~~v~-va~~~~~e~ll~~l~~l 224 (229)
T 3p9z_A 185 NYTAISIGNTTALYLQEQ------GIPSY-IAKKPSLEACLELALSL 224 (229)
T ss_dssp TCEEEESSHHHHHHHHHT------TCCEE-ECSSSSHHHHHHHHHHT
T ss_pred CCEEEEECHHHHHHHHHc------CCCce-eCCCCCHHHHHHHHHHH
Confidence 789999999999999999 99974 78999999999999876
No 9
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=99.76 E-value=2.5e-18 Score=150.74 Aligned_cols=122 Identities=20% Similarity=0.205 Sum_probs=106.1
Q ss_pred CCCCeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCCc-hHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhc--
Q 026235 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDT-DRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA-- 124 (241)
Q Consensus 48 l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~-~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~-- 124 (241)
..|++||++|+...++.+.+.|+++|++|..+|+|++++.++. +.+.+.+...+.+|+|+|||+++|++|++.+.+.
T Consensus 155 ~~g~~vLi~rg~~~r~~L~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l~~~~~~d~v~ftS~~~v~~f~~~~~~~~~ 234 (286)
T 1jr2_A 155 SSALPLLFPCGNLKREILPKALKDKGIAMESITVYQTVAHPGIQGNLNSYYSQQGVPASITFFSPSGLTYSLKHIQELSG 234 (286)
T ss_dssp CCSSCEEEEESCGGGCCHHHHHHTTTCCEEEEECEEEEECTTHHHHHHHHHHHHCSCSEEEESSHHHHHHHHHHHHHHHG
T ss_pred cCCCeEEEECChhhHHHHHHHHHHCCCeeEEEEEEEEeeCCCcHHHHHHHHHhCCCCCEEEEEChHHHHHHHHHHhhhcc
Confidence 4689999999999999999999999999999999999987653 3455555444789999999999999999988652
Q ss_pred -CCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCC
Q 026235 125 -GTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG 175 (241)
Q Consensus 125 -~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~ 175 (241)
.+.+++++|||+.|+++|+++ |+.++++|+.++.++|+++|.+..
T Consensus 235 ~~l~~~~i~aIG~~Ta~~l~~~------G~~~~~va~~~~~~~ll~al~~~~ 280 (286)
T 1jr2_A 235 DNIDQIKFAAIGPTTARALAAQ------GLPVSCTAESPTPQALATGIRKAL 280 (286)
T ss_dssp GGGGGSEEEESSHHHHHHHHHT------TCCCSEECSSSSHHHHHHHHHHHT
T ss_pred ccccCCEEEEECHHHHHHHHHc------CCCceEecCCCCHHHHHHHHHHHH
Confidence 245789999999999999999 999988999999999999997764
No 10
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=99.76 E-value=4.5e-18 Score=146.54 Aligned_cols=120 Identities=15% Similarity=0.159 Sum_probs=105.7
Q ss_pred CCCCCeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCC-chHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhc-
Q 026235 47 SNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPD-TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA- 124 (241)
Q Consensus 47 ~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~-~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~- 124 (241)
...|++||++|+...++.|.+.|+++|++|..+++|++++.+. .+.+.+.+ ..+.+|+|+|||+++|++|++.+.+.
T Consensus 130 ~~~~~~vL~~rg~~~r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l-~~~~~d~v~ftS~s~v~~~~~~~~~~~ 208 (254)
T 4es6_A 130 RVHDPKVLIMRGEGGREFLAERLRGQGVQVDYLPLYRRRAPDYPAGELLARV-RAERLNGLVVSSGQGLQNLYQLAAADW 208 (254)
T ss_dssp CSSSCEEEEEECSSCCCHHHHHHHHTTCEEEEEECEEEECCCCCTTHHHHHH-HHTTCCEEECCSHHHHHHHHHHHGGGH
T ss_pred cCCCCEEEEEcCCccHHHHHHHHHHCCCEEEEEeEEEeeCCCCCHHHHHHHH-HhCCCCEEEEcCHHHHHHHHHHhhHHH
Confidence 5678999999999999999999999999999999999998764 34555556 34789999999999999999988653
Q ss_pred -CCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhh
Q 026235 125 -GTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (241)
Q Consensus 125 -~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~ 173 (241)
.+.+++++|||+.|+++++++ |++++++|+.++.++|+++|.+
T Consensus 209 ~~l~~~~~~aIG~~Ta~~l~~~------G~~~~~~a~~~~~~~l~~ai~~ 252 (254)
T 4es6_A 209 PEIGRLPLFVPSPRVAEMAREL------GAQRVIDCRGASAPALLAALTS 252 (254)
T ss_dssp HHHTTSCEEESSHHHHHHHHHT------TCSSEEECSSSSHHHHHHHHHH
T ss_pred HHHhCCeEEEECHHHHHHHHHc------CCCceEECCCCCHHHHHHHHHh
Confidence 235789999999999999999 9999899999999999999865
No 11
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen III synthase, HMB, lyase; 2.50A {Pseudomonas syringae PV}
Probab=99.76 E-value=2.2e-18 Score=150.03 Aligned_cols=123 Identities=13% Similarity=0.132 Sum_probs=107.1
Q ss_pred CCCCCeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCC-chHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhc-
Q 026235 47 SNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPD-TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA- 124 (241)
Q Consensus 47 ~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~-~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~- 124 (241)
...|++||++|+...++.+.+.|+++|++|..+|+|++++.+. .+.+.+.+. .+.+|+|+|||+++|++|++.+.+.
T Consensus 138 ~~~g~~vLi~rg~~~r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~-~~~~d~v~ftS~s~v~~~~~~~~~~~ 216 (269)
T 3re1_A 138 AVPGSRVLIMRGNEGRELLAEQLRERGVGVDYLPLYRRYLPQHAPGTLLQRVE-VERLNGLVVSSGQGFEHLLQLAGDSW 216 (269)
T ss_dssp CSSSCEEEEEECSSCCCHHHHHHHHTTCEEEEEECEEEECCCCCTTTTHHHHH-HTTCCEEECSSHHHHTTTHHHHGGGH
T ss_pred cCCCCEEEEEccCccHHHHHHHHHHCCCEEEEEeEEEEECCCCCHHHHHHHHH-cCCCCEEEEcCHHHHHHHHHHhhHHH
Confidence 4679999999999999999999999999999999999998654 344444552 3789999999999999999988653
Q ss_pred -CCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCCC
Q 026235 125 -GTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGK 176 (241)
Q Consensus 125 -~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~~ 176 (241)
.+.+++++|||+.|+++++++ |++++++|+.++.++|+++|.+...
T Consensus 217 ~~l~~~~~~aIG~~Ta~~l~~~------G~~~~~va~~~t~~~l~~al~~~~~ 263 (269)
T 3re1_A 217 PDLAGLPLFVPSPRVASLAQAA------GARNVIDCRGASAAALLAALRDQPQ 263 (269)
T ss_dssp HHHTTSCEEESSHHHHHHHHHH------TCSSEEECSSSSHHHHHHHHHHSCC
T ss_pred HHHhCCeEEEECHHHHHHHHHC------CCCceEECCCCCHHHHHHHHHHHhc
Confidence 235789999999999999999 9999899999999999999988753
No 12
>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porph structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} PDB: 1wd7_A 1wcx_A
Probab=99.73 E-value=9.2e-18 Score=144.79 Aligned_cols=118 Identities=18% Similarity=0.114 Sum_probs=99.8
Q ss_pred CC-eEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCC-chHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcC--
Q 026235 50 NP-KVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPD-TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAG-- 125 (241)
Q Consensus 50 g~-~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~-~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~-- 125 (241)
|+ +||++|+...++.+.+.|+++|++|..+|+|++++..+ .+.+.+.+. .+.+|+|+|||+++|++|++.+.+.+
T Consensus 130 g~~~vL~~r~~~~~~~L~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l~-~~~~d~v~ftS~~~v~~~~~~~~~~~~~ 208 (261)
T 1wcw_A 130 GRGVAALQLYGKPLPLLENALAERGYRVLPLMPYRHLPDPEGILRLEEALL-RGEVDALAFVAAIQVEFLFEGAKDPKAL 208 (261)
T ss_dssp CCEEEEEECCSSCCHHHHHHHHHTTEEEEEECSEEEEECHHHHHHHHHHHH-HTCCSEEEECSHHHHHHHHHHCSCHHHH
T ss_pred CCceEEEEccCcccHHHHHHHHHCCCEEEEEeeEEEecCCccHHHHHHHHH-cCCCCEEEEECHHHHHHHHHHHhhccch
Confidence 88 99999999999999999999999999999999996432 233334442 37899999999999999998764321
Q ss_pred ---CC-CcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhC
Q 026235 126 ---TP-NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (241)
Q Consensus 126 ---~~-~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~ 174 (241)
+. +++++|||+.|+++++++ |++++++|+.++.++|+++|.++
T Consensus 209 ~~~l~~~~~~~aIG~~Ta~~l~~~------G~~~~~~a~~~~~~~l~~~l~~~ 255 (261)
T 1wcw_A 209 REALNTRVKALAVGRVTADALREW------GVKPFYVDETERLGSLLQGFKRA 255 (261)
T ss_dssp HHHHHHTSEEEEESHHHHHHHHHT------TCCCSEEECSCCHHHHHHHHHHH
T ss_pred hHHhhcCCEEEEECHHHHHHHHHc------CCCCceecCCCCHHHHHHHHHHH
Confidence 24 689999999999999999 99998889999999999998764
No 13
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=99.72 E-value=1.1e-17 Score=142.74 Aligned_cols=120 Identities=18% Similarity=0.125 Sum_probs=103.5
Q ss_pred CCCCCCeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCC-chHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhc
Q 026235 46 ASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPD-TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA 124 (241)
Q Consensus 46 ~~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~-~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~ 124 (241)
....|++||++|+...++.+.+.|+++|++|..+++|++++.+. .+.+.+.+. .+.+|+|+|||+++|++|++.+.+.
T Consensus 116 ~~~~g~~vL~~rg~~~r~~l~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l~-~~~~d~v~ftS~s~v~~~~~~~~~~ 194 (240)
T 3mw8_A 116 EQVSGKQIVIVRGKGGREAMADGLRLRGANVSYLEVYQRACPPLDAPASVSRWQ-SFGIDTIVVTSGEVLENLINLVPKD 194 (240)
T ss_dssp TCCTTCEEEEEEESSSCCHHHHHHHHTTCEEEEEEEEEEECCCCCHHHHHHHHH-HHTCCEEECCSHHHHHHHHHHSCGG
T ss_pred ccCCCCEEEEEeCCCcHHHHHHHHHHCCCEEEEEEEEEeeCCCCCHHHHHHHHH-hCCCCEEEEcCHHHHHHHHHHcchH
Confidence 35689999999999999999999999999999999999998764 344555552 3579999999999999999987543
Q ss_pred C---CCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhh
Q 026235 125 G---TPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (241)
Q Consensus 125 ~---~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~ 172 (241)
. +.+++++|||+.|+++++++ |++++++++.++.++|+++|.
T Consensus 195 ~~~~l~~~~~~aiG~~ta~~l~~~------G~~~~~va~~p~~~~ll~al~ 239 (240)
T 3mw8_A 195 SFAWLRDCHIIVPSARVETQARKK------GLRRVTNAGAANQAAVLDALG 239 (240)
T ss_dssp GHHHHHHSEEEESSHHHHHHHHHT------TCCCEEECSSSSHHHHHHHHT
T ss_pred HHHHHhCCCEEEECHHHHHHHHHc------CCCceEeCCCCCHHHHHHHhh
Confidence 2 24689999999999999999 999989999999999999874
No 14
>3d8t_A Uroporphyrinogen-III synthase; heme biosynthesis, lyase; 1.60A {Thermus thermophilus} PDB: 3d8r_A 3d8s_A 3d8n_A
Probab=99.72 E-value=2e-17 Score=145.08 Aligned_cols=118 Identities=17% Similarity=0.117 Sum_probs=100.5
Q ss_pred CC-eEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCC-chHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhc---
Q 026235 50 NP-KVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPD-TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA--- 124 (241)
Q Consensus 50 g~-~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~-~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~--- 124 (241)
|+ +||++|+...++.+.+.|+++|++|..+|+|++++..+ .+.+.+.+ ..+.+|+|+|||+++|++|++.+.+.
T Consensus 155 g~~~vLi~r~~~~~~~L~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l-~~~~~d~v~FtS~~~v~~~~~~~~~~~~~ 233 (286)
T 3d8t_A 155 GRGVAALQLYGKPLPLLENALAERGYRVLPLMPYRHLPDPEGILRLEEAV-LRGEVDALAFVAAIQVEFLFEGAKDPKAL 233 (286)
T ss_dssp CCSEEEEECSSSCCHHHHHHHHHTTCEEEEECSEEEEECHHHHHHHHHHH-HTTCCSEEEESSHHHHHHHHHHCSCHHHH
T ss_pred CCceEEEEccCcccHHHHHHHHHCCCEEEEEEEEEEecCcccHHHHHHHH-HcCCCCEEEEECHHHHHHHHHHHHhccch
Confidence 88 99999999999999999999999999999999996432 23344444 34789999999999999999876432
Q ss_pred --CCC-CcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhC
Q 026235 125 --GTP-NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (241)
Q Consensus 125 --~~~-~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~ 174 (241)
.+. +++++|||+.|+++++++ |+.++++|+.++.++|+++|.+.
T Consensus 234 ~~~l~~~~~i~aIG~~TA~al~~~------G~~~~~~a~~~~~~~L~~~l~~~ 280 (286)
T 3d8t_A 234 REALNTRVKALAVGRVTADALREW------GVKPFYVDETERLGSLLQGFKRA 280 (286)
T ss_dssp HHHHTTTSEEEEESHHHHHHHHHT------TCCCSEEECSSCHHHHHHHHHHH
T ss_pred hhHhhcCCEEEEECHHHHHHHHHc------CCCceEEeCCCCHHHHHHHHHHH
Confidence 134 789999999999999999 99998899999999999999764
No 15
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}
Probab=95.31 E-value=0.038 Score=47.65 Aligned_cols=174 Identities=11% Similarity=0.035 Sum_probs=99.8
Q ss_pred CCCCeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeC----CCchHHHHHHhcCCCccEEEEe--------------
Q 026235 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQG----PDTDRLSSVLNADTIFDWIIIT-------------- 109 (241)
Q Consensus 48 l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~----~~~~~l~~~l~~l~~~d~IiFT-------------- 109 (241)
+.|++|++.........+.+.|.+.|+++.....-..... ...+++ .+.+.++|.|+..
T Consensus 3 ~~~m~i~v~~~~~~~~~~~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~d~ii~~~~~~~~~~~i~~~~ 79 (293)
T 3d4o_A 3 LTGKHVVIIGGDARQLEIIRKLSTFDAKISLVGFDQLDDGFIGVTKMRID---EVDWNTVDAILLPISGTNEAGKVDTIF 79 (293)
T ss_dssp CTTCEEEEECBCHHHHHHHHHHHHTTCEEEEESCTTCC--CTTCEEECGG---GCCGGGCSEEECCTTCCCTTCBCCBSS
T ss_pred ccCcEEEEECCCHHHHHHHHHHHhCCCEEEEeccccccccccccccccch---HHHHhcCCEEEeccccccCCceeeccc
Confidence 5689999998877777888999999999876532110000 000111 2234678988863
Q ss_pred --CHHHH-HHHHHHHHhcCCCCcEEEEeCHHHH---HHHHHhhhccCCCCceeecCC-----CCCHHHHHH----Hhhh-
Q 026235 110 --SPEAG-SVFLEAWKEAGTPNVRIGVVGAGTA---SIFEEVIQSSKCSLDVAFSPS-----KATGKILAS----ELPK- 173 (241)
Q Consensus 110 --S~~aV-~~f~~~l~~~~~~~~~i~aIG~~Ta---~~L~~~~~~~~~Gi~~~~~p~-----~~t~e~L~~----~l~~- 173 (241)
++..+ +.+++. .++.++++.|--.- +++++. |+.+.-.|+ ..++..+.+ .+..
T Consensus 80 ~~~~~~~~~~~l~~-----~~~l~~i~~G~d~id~~~~~~~~------gi~v~~~~~~~~~~~~~~~svae~a~~~~l~~ 148 (293)
T 3d4o_A 80 SNESIVLTEEMIEK-----TPNHCVVYSGISNTYLNQCMKKT------NRTLVKLMERDDIAIYNSIPTAEGTIMMAIQH 148 (293)
T ss_dssp CSCCCBCCHHHHHT-----SCTTCEEEESSCCHHHHHHHHHH------TCEEEEGGGCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCccchHHHHHh-----CCCCCEEEecCCCHHHHHHHHHc------CCeEEEecCCceeeeeccHhHHHHHHHHHHHh
Confidence 11111 222322 24466666775433 567888 998866663 223332222 2212
Q ss_pred --CCCCccEEEEEccCCCchhHHHHHHhCCCeeeEeeeeeeecCCC--------C---hHHHHHHcCCCCEEEEECCc
Q 026235 174 --NGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHH--------V---DQTVLKQALSIPVVAVASPS 238 (241)
Q Consensus 174 --~~~~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~--------~---~~~~~~~l~~id~IvFtSps 238 (241)
....+++++++-.......+...|+..|++| .+|.+.+... . ...+.+.+.+.|+|+.+.|.
T Consensus 149 ~~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V---~~~dr~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~ 223 (293)
T 3d4o_A 149 TDFTIHGANVAVLGLGRVGMSVARKFAALGAKV---KVGARESDLLARIAEMGMEPFHISKAAQELRDVDVCINTIPA 223 (293)
T ss_dssp CSSCSTTCEEEEECCSHHHHHHHHHHHHTTCEE---EEEESSHHHHHHHHHTTSEEEEGGGHHHHTTTCSEEEECCSS
T ss_pred cCCCCCCCEEEEEeeCHHHHHHHHHHHhCCCEE---EEEECCHHHHHHHHHCCCeecChhhHHHHhcCCCEEEECCCh
Confidence 2345789999866555567888899999754 4554432110 0 01233335789999998874
No 16
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}
Probab=94.62 E-value=0.035 Score=48.02 Aligned_cols=176 Identities=14% Similarity=0.113 Sum_probs=98.4
Q ss_pred CCCCeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCC-chHHHHHHhcCCCccEEEE----eC----------HH
Q 026235 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPD-TDRLSSVLNADTIFDWIII----TS----------PE 112 (241)
Q Consensus 48 l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~-~~~l~~~l~~l~~~d~IiF----TS----------~~ 112 (241)
+.|++|++...........+.|.++|+++.....-+...... .....+..+.+.++|.|+. .. ..
T Consensus 5 ~~~mki~v~~~~~~~~~~~~~L~~~g~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~s~~a~~ 84 (300)
T 2rir_A 5 LTGLKIAVIGGDARQLEIIRKLTEQQADIYLVGFDQLDHGFTGAVKCNIDEIPFQQIDSIILPVSATTGEGVVSTVFSNE 84 (300)
T ss_dssp CCSCEEEEESBCHHHHHHHHHHHHTTCEEEEESCTTSSCCCTTEEECCGGGSCGGGCSEEECCSSCEETTTEECBSSCSS
T ss_pred ccCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccceeccchHHHHhcCCEEEeccccccCCcccccccccC
Confidence 678999999887777788899999999987542111110000 0000011223467898886 21 11
Q ss_pred H--H-HHHHHHHHhcCCCCcEEEEeCHHH---HHHHHHhhhccCCCCceeecCCCCCHHHHHHHh-------------hh
Q 026235 113 A--G-SVFLEAWKEAGTPNVRIGVVGAGT---ASIFEEVIQSSKCSLDVAFSPSKATGKILASEL-------------PK 173 (241)
Q Consensus 113 a--V-~~f~~~l~~~~~~~~~i~aIG~~T---a~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l-------------~~ 173 (241)
- + +.+++. .+..+++++|--. .+++.+. |+.+.-+|.. ..-.+...+ ..
T Consensus 85 ~~~~~~~~l~~-----~~~l~~i~~g~~~~d~~~~~~~~------gi~v~~~~~~-~~v~~~r~~~~~~g~~~~~~~~~~ 152 (300)
T 2rir_A 85 EVVLKQDHLDR-----TPAHCVIFSGISNAYLENIAAQA------KRKLVKLFER-DDIAIYNSIPTVEGTIMLAIQHTD 152 (300)
T ss_dssp CEECCHHHHHT-----SCTTCEEEESSCCHHHHHHHHHT------TCCEEEGGGS-HHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred CccchHHHHhh-----cCCCCEEEEecCCHHHHHHHHHC------CCEEEeecCC-CceEEEcCccHHHHHHHHHHHhcC
Confidence 1 1 223332 2445556677544 3467788 9998777653 221222221 11
Q ss_pred CCCCccEEEEEccCCCchhHHHHHHhCCCeeeEeeeeeeecCCCC-----------hHHHHHHcCCCCEEEEECCc
Q 026235 174 NGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHV-----------DQTVLKQALSIPVVAVASPS 238 (241)
Q Consensus 174 ~~~~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~-----------~~~~~~~l~~id~IvFtSps 238 (241)
....+++++++-.......+...|+..|++ +.+|.+.+.... ...+.+.+.+.|+|+.+.|.
T Consensus 153 ~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~---V~~~d~~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~ 225 (300)
T 2rir_A 153 YTIHGSQVAVLGLGRTGMTIARTFAALGAN---VKVGARSSAHLARITEMGLVPFHTDELKEHVKDIDICINTIPS 225 (300)
T ss_dssp SCSTTSEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSHHHHHHHHHTTCEEEEGGGHHHHSTTCSEEEECCSS
T ss_pred CCCCCCEEEEEcccHHHHHHHHHHHHCCCE---EEEEECCHHHHHHHHHCCCeEEchhhHHHHhhCCCEEEECCCh
Confidence 234578999996655556788889899975 445544321100 11233335789999998874
No 17
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=94.24 E-value=0.84 Score=38.59 Aligned_cols=158 Identities=7% Similarity=-0.013 Sum_probs=83.1
Q ss_pred HHHHHHHHCCC----cEEEeceEEEeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHH
Q 026235 64 KLIKALAKHRI----DCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAG 137 (241)
Q Consensus 64 ~l~~~L~~~G~----~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~ 137 (241)
-+.+.++++|+ .+... +.... .+.+...+.++. -..+|.||+++..+...+.. . ..+++++.+|..
T Consensus 28 gi~~~l~~~Gy~~g~~v~l~-~~~~~--~~~~~~~~~~~~l~~~~vDgII~~~~~~~~~~~~---~--~~~iPvV~~~~~ 99 (302)
T 2qh8_A 28 GLLDGLKAKGYEEGKNLEFD-YKTAQ--GNPAIAVQIARQFVGENPDVLVGIATPTAQALVS---A--TKTIPIVFTAVT 99 (302)
T ss_dssp HHHHHHHHTTCCBTTTEEEE-EEECT--TCHHHHHHHHHHHHHTCCSEEEEESHHHHHHHHH---H--CSSSCEEEEEES
T ss_pred HHHHHHHHcCCCCCCceEEE-EecCC--CCHHHHHHHHHHHHhCCCCEEEECChHHHHHHHh---c--CCCcCEEEEecC
Confidence 45667888998 54421 11221 222222222222 26899999998766554332 1 356788887742
Q ss_pred HHHH---HHHhhhccCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEccCCCc------hhHHHHHHhCCCeeeEee
Q 026235 138 TASI---FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKAS------NEIEEGLSNRGFEVVRLN 208 (241)
Q Consensus 138 Ta~~---L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~~~~~~iL~~~g~~~~------~~L~~~L~~~G~~V~~~~ 208 (241)
-... +... ...+-...-+.+.......++.|.+..+..++|.++.+.... ..+.+.|++.|+++....
T Consensus 100 ~~~~~~~v~~~---~~~~~~~~gv~~~~~~~~~~~~l~~~~Pg~~~I~~i~~~~~~~~~~r~~g~~~al~~~gi~~~~~~ 176 (302)
T 2qh8_A 100 DPVGAKLVKQL---EQPGKNVTGLSDLSPVEQHVELIKEILPNVKSIGVVYNPGEANAVSLMELLKLSAAKHGIKLVEAT 176 (302)
T ss_dssp CTTTTTSCSCS---SSCCSSEEEEECCCCHHHHHHHHHHHSTTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CHhhcCccccc---cCCCCCEEEEECCcCHHHHHHHHHHhCCCCcEEEEEecCCCcchHHHHHHHHHHHHHcCCEEEEEe
Confidence 1110 0000 000111111223334566777777654445799999876421 356778889999887766
Q ss_pred eeeeecCCCChHHHHHH-cCCCCEEEEEC
Q 026235 209 TYTTEPVHHVDQTVLKQ-ALSIPVVAVAS 236 (241)
Q Consensus 209 vY~~~~~~~~~~~~~~~-l~~id~IvFtS 236 (241)
++.. .. ..+..+. +.++|+|+..+
T Consensus 177 ~~~~---~~-~~~~~~~l~~~~dai~~~~ 201 (302)
T 2qh8_A 177 ALKS---AD-VQSATQAIAEKSDVIYALI 201 (302)
T ss_dssp CSSG---GG-HHHHHHHHGGGCSEEEECS
T ss_pred cCCh---HH-HHHHHHHHhccCCEEEECC
Confidence 5532 11 1222222 36789887654
No 18
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=93.97 E-value=0.78 Score=34.94 Aligned_cols=111 Identities=15% Similarity=0.156 Sum_probs=71.5
Q ss_pred CCeEEEeCCCC-----ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHH-----HHHHHHH
Q 026235 50 NPKVVVTRERG-----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE-----AGSVFLE 119 (241)
Q Consensus 50 g~~VLitR~~~-----~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~-----aV~~f~~ 119 (241)
..+|++..... +..-+...|+..|++|+++-.. .+ .+++.+...+ .+.|.|.+++.. .++.+.+
T Consensus 3 ~~~vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~~--~p---~e~~v~~a~~-~~~d~v~lS~~~~~~~~~~~~~i~ 76 (137)
T 1ccw_A 3 KKTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVL--SP---QELFIKAAIE-TKADAILVSSLYGQGEIDCKGLRQ 76 (137)
T ss_dssp CCEEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEE--EC---HHHHHHHHHH-HTCSEEEEEECSSTHHHHHTTHHH
T ss_pred CCEEEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCCC--CC---HHHHHHHHHh-cCCCEEEEEecCcCcHHHHHHHHH
Confidence 35677765543 2345667899999999987552 22 2334344422 577888877633 2445566
Q ss_pred HHHhcCCCCcEEEEeCHH---------HHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhh
Q 026235 120 AWKEAGTPNVRIGVVGAG---------TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (241)
Q Consensus 120 ~l~~~~~~~~~i~aIG~~---------Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~ 173 (241)
.+++.+.+++++++=|.. ..+.+++. |+... .+...+...+++.+.+
T Consensus 77 ~l~~~g~~~i~v~vGG~~~~~~~~~~~~~~~~~~~------G~d~~-~~~g~~~~~~~~~l~~ 132 (137)
T 1ccw_A 77 KCDEAGLEGILLYVGGNIVVGKQHWPDVEKRFKDM------GYDRV-YAPGTPPEVGIADLKK 132 (137)
T ss_dssp HHHHTTCTTCEEEEEESCSSSSCCHHHHHHHHHHT------TCSEE-CCTTCCHHHHHHHHHH
T ss_pred HHHhcCCCCCEEEEECCCcCchHhhhhhHHHHHHC------CCCEE-ECCCCCHHHHHHHHHH
Confidence 677766667888887754 14568998 99864 4445677777777754
No 19
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=93.63 E-value=0.49 Score=39.46 Aligned_cols=160 Identities=9% Similarity=0.004 Sum_probs=88.3
Q ss_pred HHHHHHHHHC-CCcEEEeceEEEeeCCCchHHHHHHhc--CCCccEEEEeCHH--HHHHHHHHHHhcCCCCcEEEEeCHH
Q 026235 63 GKLIKALAKH-RIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAG 137 (241)
Q Consensus 63 ~~l~~~L~~~-G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~--aV~~f~~~l~~~~~~~~~i~aIG~~ 137 (241)
..+.+.++++ |+.+......... .+.+...+.++. -..+|.||+.... +.....+.+.+. ++++++++..
T Consensus 29 ~gi~~~a~~~~g~~~~~~~~~~~~--~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~---~iPvV~~~~~ 103 (304)
T 3gbv_A 29 KGIREAVTTYSDFNISANITHYDP--YDYNSFVATSQAVIEEQPDGVMFAPTVPQYTKGFTDALNEL---GIPYIYIDSQ 103 (304)
T ss_dssp HHHHHHHHHTGGGCEEEEEEEECS--SCHHHHHHHHHHHHTTCCSEEEECCSSGGGTHHHHHHHHHH---TCCEEEESSC
T ss_pred HHHHHHHHHHHhCCeEEEEEcCCC--CCHHHHHHHHHHHHhcCCCEEEECCCChHHHHHHHHHHHHC---CCeEEEEeCC
Confidence 3455667778 8887765443221 222222222221 3789999998754 344455555443 5789999854
Q ss_pred HHHHHHHhhhccCCCCceeecCCCC-CHHHHHHHhhhCCCCccEEEEEc----cCCCc-------hhHHHHHHhCCCeee
Q 026235 138 TASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPA----SAKAS-------NEIEEGLSNRGFEVV 205 (241)
Q Consensus 138 Ta~~L~~~~~~~~~Gi~~~~~p~~~-t~e~L~~~l~~~~~~~~~iL~~~----g~~~~-------~~L~~~L~~~G~~V~ 205 (241)
.. .. +....+..+.+ .+..+++.|.+....+++|.++. |.... .-+.+.|++.|.++.
T Consensus 104 ~~----~~------~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~~~~~g~~~~~~~~~R~~gf~~~l~~~g~~~~ 173 (304)
T 3gbv_A 104 IK----DA------PPLAFFGQNSHQSGYFAARMLMLLAVNDREIVIFRKIHEGVIGSNQQESREIGFRQYMQEHHPACN 173 (304)
T ss_dssp CT----TS------CCSEEEECCHHHHHHHHHHHHHHHSTTCSEEEEEEEEBTTBCCCHHHHHHHHHHHHHHHHHCTTSE
T ss_pred CC----CC------CceEEEecChHHHHHHHHHHHHHHhCCCCeEEEEEecccCCccchhHHHHHHHHHHHHHhhCCCcE
Confidence 21 11 11112333322 34555666666543347999998 33222 246778888888887
Q ss_pred EeeeeeeecCCCChHHHHHH-c---CCCCEEEEECC
Q 026235 206 RLNTYTTEPVHHVDQTVLKQ-A---LSIPVVAVASP 237 (241)
Q Consensus 206 ~~~vY~~~~~~~~~~~~~~~-l---~~id~IvFtSp 237 (241)
...++..........+.... + ..+|+|+.++-
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d 209 (304)
T 3gbv_A 174 ILELNLHADLNIEDSRMLDDFFREHPDVKHGITFNS 209 (304)
T ss_dssp EEEEEEESSCSSCHHHHHHHHHHHCTTCCEEEESSS
T ss_pred EEEeeecCCCHHHHHHHHHHHHHhCCCeEEEEEcCc
Confidence 77666554443333333222 3 47898877654
No 20
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=93.60 E-value=0.58 Score=39.39 Aligned_cols=159 Identities=9% Similarity=0.039 Sum_probs=85.2
Q ss_pred HHHHHHHHHCCC---cEEEeceEEEeeCCCchHHHHHHh--cCCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHH
Q 026235 63 GKLIKALAKHRI---DCLELPLIQHAQGPDTDRLSSVLN--ADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAG 137 (241)
Q Consensus 63 ~~l~~~L~~~G~---~v~~~P~~~~~~~~~~~~l~~~l~--~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~ 137 (241)
.-+.+.++++|+ .+... +.... .+.+...+.++ .-..+|.||+++..+...+.. . ..+++++.+|..
T Consensus 21 ~gi~~~l~~~gy~g~~v~l~-~~~~~--~~~~~~~~~~~~l~~~~vDgII~~~~~~~~~~~~---~--~~~iPvV~~~~~ 92 (295)
T 3lft_A 21 KGIQDGLAEEGYKDDQVKID-FMNSE--GDQSKVATMSKQLVANGNDLVVGIATPAAQGLAS---A--TKDLPVIMAAIT 92 (295)
T ss_dssp HHHHHHHHHTTCCGGGEEEE-EEECT--TCHHHHHHHHHHHTTSSCSEEEEESHHHHHHHHH---H--CSSSCEEEESCS
T ss_pred HHHHHHHHHcCCCCCceEEE-EecCC--CCHHHHHHHHHHHHhcCCCEEEECCcHHHHHHHH---c--CCCCCEEEEecc
Confidence 345667888998 65432 11211 22222222222 236899999998766554332 1 256888888742
Q ss_pred HHHH---HHHhhhccCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEccCCCc------hhHHHHHHhCCCeeeEee
Q 026235 138 TASI---FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKAS------NEIEEGLSNRGFEVVRLN 208 (241)
Q Consensus 138 Ta~~---L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~~~~~~iL~~~g~~~~------~~L~~~L~~~G~~V~~~~ 208 (241)
.... .... ...+-...-+.+.......++.|.+..+..++|.++.+.... ..+.+.|++.|+++....
T Consensus 93 ~~~~~~~v~~~---~~~~~~~~gv~~~~~~~~~~~~l~~~~pg~~~I~~i~~~~~~~~~~r~~g~~~al~~~gi~~~~~~ 169 (295)
T 3lft_A 93 DPIGANLVKDL---KKPGGNVTGVSDHNPAQQQVELIKALTPNVKTIGALYSSSEDNSKTQVEEFKAYAEKAGLTVETFA 169 (295)
T ss_dssp CTTTTTSCSCS---SCCCSSEEEEEECCCHHHHHHHHHHHCTTCCEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred ChhhcCccccc---cCCCCcEEEEECCccHHHHHHHHHHhCCCCcEEEEEeCCCCcchHHHHHHHHHHHHHcCCEEEEEe
Confidence 1100 0000 000111111223345667777777764445799999876431 346778889999887766
Q ss_pred eeeeecCCCChHHHHHHc-CCCCEEEEEC
Q 026235 209 TYTTEPVHHVDQTVLKQA-LSIPVVAVAS 236 (241)
Q Consensus 209 vY~~~~~~~~~~~~~~~l-~~id~IvFtS 236 (241)
++.. .. ..+..+.+ .++|+|+..+
T Consensus 170 ~~~~---~~-~~~~~~~l~~~~dai~~~~ 194 (295)
T 3lft_A 170 VPST---NE-IASTVTVMTSKVDAIWVPI 194 (295)
T ss_dssp ESSG---GG-HHHHHHHHTTTCSEEEECS
T ss_pred cCCH---HH-HHHHHHHHHhcCCEEEECC
Confidence 5532 11 12223333 6789887654
No 21
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=93.47 E-value=0.13 Score=43.36 Aligned_cols=154 Identities=12% Similarity=0.123 Sum_probs=84.9
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHHHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~L 142 (241)
..+.+.++++|+.+.....-. ......+.+.+. -..+|.||+.+...-....+.+.+ .+++++++|...
T Consensus 30 ~gi~~~a~~~g~~~~~~~~~~---~~~~~~~~~~l~-~~~vdGiIi~~~~~~~~~~~~l~~---~~iPvV~~~~~~---- 98 (294)
T 3qk7_A 30 SWIGIELGKRGLDLLLIPDEP---GEKYQSLIHLVE-TRRVDALIVAHTQPEDFRLQYLQK---QNFPFLALGRSH---- 98 (294)
T ss_dssp HHHHHHHHHTTCEEEEEEECT---TCCCHHHHHHHH-HTCCSEEEECSCCSSCHHHHHHHH---TTCCEEEESCCC----
T ss_pred HHHHHHHHHCCCEEEEEeCCC---hhhHHHHHHHHH-cCCCCEEEEeCCCCChHHHHHHHh---CCCCEEEECCCC----
Confidence 345567788999888765421 222333444442 268999999876432333444444 357899998641
Q ss_pred HHhhhccCCCCceeecCCCC-CHHHHHHHhhhCCCCccEEEEEccCCCc-------hhHHHHHHhCCCeeeEeeeeeeec
Q 026235 143 EEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTEP 214 (241)
Q Consensus 143 ~~~~~~~~~Gi~~~~~p~~~-t~e~L~~~l~~~~~~~~~iL~~~g~~~~-------~~L~~~L~~~G~~V~~~~vY~~~~ 214 (241)
... ++.. +..+.+ .+...++.|.+.. .++|.++.|.... .-+.+.|++.|.++....++....
T Consensus 99 ~~~------~~~~-V~~D~~~~~~~a~~~L~~~G--~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~ 169 (294)
T 3qk7_A 99 LPK------PYAW-FDFDNHAGASLAVKRLLELG--HQRIAFVSTDARISYVDQRLQGYVQTMSEAGLMPLAGYLQKADP 169 (294)
T ss_dssp CSS------CCEE-EEECHHHHHHHHHHHHHHTT--CCCEEEEEESSCCHHHHHHHHHHHHHHHTTTCCCCTTCEEEECS
T ss_pred CCC------CCCE-EEcChHHHHHHHHHHHHHCC--CceEEEEeCCcccchHHHHHHHHHHHHHHCCCCCChhHeecCCC
Confidence 122 4332 233322 3345566666653 4689999887543 235677888998775544443322
Q ss_pred CCCChHHH-HHHc---CCCCEEEEEC
Q 026235 215 VHHVDQTV-LKQA---LSIPVVAVAS 236 (241)
Q Consensus 215 ~~~~~~~~-~~~l---~~id~IvFtS 236 (241)
......+. .+.+ ..+|+|+-++
T Consensus 170 ~~~~~~~~~~~~l~~~~~~~ai~~~n 195 (294)
T 3qk7_A 170 TRPGGYLAASRLLALEVPPTAIITDC 195 (294)
T ss_dssp SHHHHHHHHHHHHHSSSCCSEEEESS
T ss_pred CHHHHHHHHHHHHcCCCCCcEEEECC
Confidence 21111122 2222 4688887654
No 22
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Probab=93.43 E-value=0.62 Score=42.46 Aligned_cols=171 Identities=13% Similarity=0.068 Sum_probs=97.1
Q ss_pred CCCCCeEEEeCCCCChHHHHHHHHHCCC-cEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHH-HHHHHHHhc
Q 026235 47 SNSNPKVVVTRERGKNGKLIKALAKHRI-DCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGS-VFLEAWKEA 124 (241)
Q Consensus 47 ~l~g~~VLitR~~~~~~~l~~~L~~~G~-~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~-~f~~~l~~~ 124 (241)
+...++||++.+-. ....+.|++.|+ ++...+- . .+.+++.+. +.++|.++..|..-+. .+++.+
T Consensus 12 ~~~~~kIl~~~~i~--~~~~~~l~~~g~~~v~~~~~----~-~~~~~l~~~---~~~~d~l~v~~~~~i~~~~l~~~--- 78 (416)
T 3k5p_A 12 SRDRINVLLLEGIS--QTAVEYFKSSGYTNVTHLPK----A-LDKADLIKA---ISSAHIIGIRSRTQLTEEIFAAA--- 78 (416)
T ss_dssp CGGGSCEEECSCCC--HHHHHHHHHTTCCCEEECSS----C-CCHHHHHHH---HTTCSEEEECSSCCBCHHHHHHC---
T ss_pred CCCCcEEEEECCCC--HHHHHHHHHCCCcEEEECCC----C-CCHHHHHHH---ccCCEEEEEcCCCCCCHHHHHhC---
Confidence 33357899997753 456678899998 6655431 1 123444444 4788999887754332 233322
Q ss_pred CCCCcEEE-EeCHHH----HHHHHHhhhccCCCCceeecCCCCCHHHHHHHhh-------h-------------------
Q 026235 125 GTPNVRIG-VVGAGT----ASIFEEVIQSSKCSLDVAFSPSKATGKILASELP-------K------------------- 173 (241)
Q Consensus 125 ~~~~~~i~-aIG~~T----a~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~-------~------------------- 173 (241)
++++++ +.|-.+ -+++++. |+.+.-.| ..++++++|... +
T Consensus 79 --p~Lk~I~~~~~G~d~IDl~~a~~~------GI~V~n~p-~~n~~aVAE~~l~l~L~l~R~i~~~~~~~~~g~W~~~~~ 149 (416)
T 3k5p_A 79 --NRLIAVGCFSVGTNQVELKAARKR------GIPVFNAP-FSNTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWEKTAI 149 (416)
T ss_dssp --TTCCEEEECSSCCTTBCHHHHHHT------TCCEECCS-STTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCT
T ss_pred --CCcEEEEECccccCccCHHHHHhc------CcEEEeCC-CcccHHHHHHHHHHHHHHhcccHHHHHhhhcccccccCC
Confidence 334443 344444 5778888 99886555 455555544321 0
Q ss_pred --CCCCccEEEEEccCCCchhHHHHHHhCCCeeeEeeeeeeecCCC--ChHHHHHHcCCCCEEEEECCcc
Q 026235 174 --NGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHH--VDQTVLKQALSIPVVAVASPSA 239 (241)
Q Consensus 174 --~~~~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~--~~~~~~~~l~~id~IvFtSps~ 239 (241)
....|+++.++.-..-...+...|+..|.+|..+..+....... ....+.+.+.+.|+|++.-|.+
T Consensus 150 ~~~el~gktvGIIGlG~IG~~vA~~l~~~G~~V~~yd~~~~~~~~~~~~~~sl~ell~~aDvV~lhvPlt 219 (416)
T 3k5p_A 150 GSREVRGKTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQYGNVKPAASLDELLKTSDVVSLHVPSS 219 (416)
T ss_dssp TCCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCCCCBTTBEECSSHHHHHHHCSEEEECCCC-
T ss_pred CCccCCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCcchhcccCcEecCCHHHHHhhCCEEEEeCCCC
Confidence 11246788888655555678889999997665443322111110 0012222346789999887753
No 23
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=93.40 E-value=0.9 Score=35.64 Aligned_cols=111 Identities=14% Similarity=0.130 Sum_probs=72.0
Q ss_pred CCeEEEeCCCC-----ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCH-----HHHHHHHH
Q 026235 50 NPKVVVTRERG-----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP-----EAGSVFLE 119 (241)
Q Consensus 50 g~~VLitR~~~-----~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~-----~aV~~f~~ 119 (241)
..+|++..+.. +..-+...|+..|++|+.+.... ..+++.+...+ .+.|.|.+++. ..+..+.+
T Consensus 18 ~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~-----p~e~lv~aa~~-~~~diV~lS~~~~~~~~~~~~~i~ 91 (161)
T 2yxb_A 18 RYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQ-----TPEQVAMAAVQ-EDVDVIGVSILNGAHLHLMKRLMA 91 (161)
T ss_dssp SCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBC-----CHHHHHHHHHH-TTCSEEEEEESSSCHHHHHHHHHH
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCC-----CHHHHHHHHHh-cCCCEEEEEeechhhHHHHHHHHH
Confidence 46777775543 24567778899999999886542 23444445533 57899888775 35666677
Q ss_pred HHHhcCCCCcEEEEeCHHHHH---HHHHhhhccCCCCceeecCCCCCHHHHHHHhhh
Q 026235 120 AWKEAGTPNVRIGVVGAGTAS---IFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (241)
Q Consensus 120 ~l~~~~~~~~~i~aIG~~Ta~---~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~ 173 (241)
.+++.+.+++++++=|....+ .+++. |+...+.| +.+.+..++.+.+
T Consensus 92 ~L~~~g~~~i~v~vGG~~~~~~~~~l~~~------G~d~v~~~-~~~~~~~~~~~~~ 141 (161)
T 2yxb_A 92 KLRELGADDIPVVLGGTIPIPDLEPLRSL------GIREIFLP-GTSLGEIIEKVRK 141 (161)
T ss_dssp HHHHTTCTTSCEEEEECCCHHHHHHHHHT------TCCEEECT-TCCHHHHHHHHHH
T ss_pred HHHhcCCCCCEEEEeCCCchhcHHHHHHC------CCcEEECC-CCCHHHHHHHHHH
Confidence 777766667899888865543 36777 99754544 3454445555543
No 24
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=92.44 E-value=0.52 Score=39.27 Aligned_cols=153 Identities=10% Similarity=0.005 Sum_probs=82.8
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~ 140 (241)
..+.+.++++|+++.....- .+.+...+.++. -..+|.||+.+........+ .....+++++++|....
T Consensus 28 ~gi~~~a~~~g~~~~~~~~~-----~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~---~~~~~~iPvV~~~~~~~- 98 (291)
T 3egc_A 28 SGVESEARHKGYSVLLANTA-----EDIVREREAVGQFFERRVDGLILAPSEGEHDYLR---TELPKTFPIVAVNRELR- 98 (291)
T ss_dssp HHHHHHHHHTTCEEEEEECT-----TCHHHHHHHHHHHHHTTCSEEEECCCSSCCHHHH---HSSCTTSCEEEESSCCC-
T ss_pred HHHHHHHHHCCCEEEEEeCC-----CCHHHHHHHHHHHHHCCCCEEEEeCCCCChHHHH---HhhccCCCEEEEecccC-
Confidence 34556778889887754321 122221222221 26899999988765333333 33235789999986532
Q ss_pred HHHHhhhccCCCCceeecCCC-CCHHHHHHHhhhCCCCccEEEEEccCCCc-------hhHHHHHHhCCCeeeEeeeeee
Q 026235 141 IFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTT 212 (241)
Q Consensus 141 ~L~~~~~~~~~Gi~~~~~p~~-~t~e~L~~~l~~~~~~~~~iL~~~g~~~~-------~~L~~~L~~~G~~V~~~~vY~~ 212 (241)
.. ++.. +..+. .....+++.|.+. ..++|.++.+.... .-+.+.|++.|..+....+...
T Consensus 99 ---~~------~~~~-V~~D~~~~g~~a~~~L~~~--G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~ 166 (291)
T 3egc_A 99 ---IP------GCGA-VLSENVRGARTAVEYLIAR--GHTRIGAIVGSAGLMTSRERLKGFRAAMSAAGLPVRQEWIAAG 166 (291)
T ss_dssp ---CT------TCEE-EEECHHHHHHHHHHHHHHT--TCCSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEC-
T ss_pred ---CC------CCCE-EEECcHHHHHHHHHHHHHc--CCCEEEEEeCCCCCcCHHHHHHHHHHHHHHcCCCCCHHHeEeC
Confidence 23 4432 33332 2345556666665 34689999887543 2366788888887654433322
Q ss_pred ecCC-CChHHHHHHc---CCCCEEEEEC
Q 026235 213 EPVH-HVDQTVLKQA---LSIPVVAVAS 236 (241)
Q Consensus 213 ~~~~-~~~~~~~~~l---~~id~IvFtS 236 (241)
.... .....+.+.+ ..+|+|+.++
T Consensus 167 ~~~~~~~~~~~~~~l~~~~~~~ai~~~~ 194 (291)
T 3egc_A 167 GVRADNGRDGAIKVLTGADRPTALLTSS 194 (291)
T ss_dssp -----CCHHHHHHHHTC-CCCSEEEESS
T ss_pred CCChhHHHHHHHHHHhCCCCCcEEEECC
Confidence 2222 2222233333 4688887654
No 25
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=92.41 E-value=0.18 Score=42.30 Aligned_cols=154 Identities=12% Similarity=0.086 Sum_probs=83.1
Q ss_pred HHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHHHHH
Q 026235 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE 143 (241)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~L~ 143 (241)
.+.+.++++|+++.....-.-. .....+.+.+. -..+|.||+.+...-....+.+.+ .+++++++|... .
T Consensus 31 gi~~~a~~~g~~~~~~~~~~~~--~~~~~~~~~l~-~~~vdgiIi~~~~~~~~~~~~l~~---~~iPvV~i~~~~----~ 100 (288)
T 3gv0_A 31 GITEVLSTTQYHLVVTPHIHAK--DSMVPIRYILE-TGSADGVIISKIEPNDPRVRFMTE---RNMPFVTHGRSD----M 100 (288)
T ss_dssp HHHHHHTTSSCEEEECCBSSGG--GTTHHHHHHHH-HTCCSEEEEESCCTTCHHHHHHHH---TTCCEEEESCCC----S
T ss_pred HHHHHHHHcCCEEEEecCCcch--hHHHHHHHHHH-cCCccEEEEecCCCCcHHHHHHhh---CCCCEEEECCcC----C
Confidence 3455677789887765432211 11223333332 268999999865433334444444 358899998642 1
Q ss_pred HhhhccCCCCceeecCCC-CCHHHHHHHhhhCCCCccEEEEEccCCCc-------hhHHHHHHhCCCeeeEeeeeeeecC
Q 026235 144 EVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTEPV 215 (241)
Q Consensus 144 ~~~~~~~~Gi~~~~~p~~-~t~e~L~~~l~~~~~~~~~iL~~~g~~~~-------~~L~~~L~~~G~~V~~~~vY~~~~~ 215 (241)
.. ++.. +..+. .....+++.|.+.. .++|.++.+.... .-+.+.|++.|.++....++.....
T Consensus 101 ~~------~~~~-V~~D~~~~g~~a~~~L~~~G--~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~ 171 (288)
T 3gv0_A 101 GI------EHAF-HDFDNEAYAYEAVERLAQCG--RKRIAVIVPPSRFSFHDHARKGFNRGIRDFGLTEFPIDAVTIETP 171 (288)
T ss_dssp SC------CCEE-EEECHHHHHHHHHHHHHHTT--CCEEEEECCCTTSHHHHHHHHHHHHHHHHTTCEECCCCSCCTTSC
T ss_pred CC------CCcE-EEeCcHHHHHHHHHHHHHCC--CCeEEEEcCCcccchHHHHHHHHHHHHHHcCCCcchhheeccccc
Confidence 22 3332 22332 23455666676653 4799999887543 2356788899987765444432211
Q ss_pred CCChHH-HHHHc---CCCCEEEEEC
Q 026235 216 HHVDQT-VLKQA---LSIPVVAVAS 236 (241)
Q Consensus 216 ~~~~~~-~~~~l---~~id~IvFtS 236 (241)
.....+ +.+.+ ..+|+|+..+
T Consensus 172 ~~~~~~~~~~~l~~~~~~~ai~~~~ 196 (288)
T 3gv0_A 172 LEKIRDFGQRLMQSSDRPDGIVSIS 196 (288)
T ss_dssp HHHHHHHHHHHTTSSSCCSEEEESC
T ss_pred hHHHHHHHHHHHhCCCCCcEEEEcC
Confidence 111112 22223 3688887654
No 26
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=91.98 E-value=0.24 Score=41.67 Aligned_cols=169 Identities=9% Similarity=-0.010 Sum_probs=87.7
Q ss_pred CCeEEEeCCCCCh-------HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhc--CCCccEEEEeCHH--HHHHHH
Q 026235 50 NPKVVVTRERGKN-------GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFL 118 (241)
Q Consensus 50 g~~VLitR~~~~~-------~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~--aV~~f~ 118 (241)
+++|.+.-+.... ..+.+.++++|+++.... ....+.+...+.++. -..+|+||+.+.. ......
T Consensus 4 ~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~----~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~ 79 (305)
T 3g1w_A 4 NETYMMITFQSGMDYWKRCLKGFEDAAQALNVTVEYRG----AAQYDIQEQITVLEQAIAKNPAGIAISAIDPVELTDTI 79 (305)
T ss_dssp -CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEEE----CSSSCHHHHHHHHHHHHHHCCSEEEECCSSTTTTHHHH
T ss_pred CceEEEEEccCCChHHHHHHHHHHHHHHHcCCEEEEeC----CCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHHHH
Confidence 4666555444332 345556778898886421 111222222222221 1579999997543 234444
Q ss_pred HHHHhcCCCCcEEEEeCHHHHHHHHHhhhccCCC-CceeecCCCC-CHHHHHHHhhhCCCCccEEEEEccCCCc------
Q 026235 119 EAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCS-LDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS------ 190 (241)
Q Consensus 119 ~~l~~~~~~~~~i~aIG~~Ta~~L~~~~~~~~~G-i~~~~~p~~~-t~e~L~~~l~~~~~~~~~iL~~~g~~~~------ 190 (241)
+.+.+ .++++++++.... .. + +.. +..+.+ .+..+++.|.+.....++|.++.+....
T Consensus 80 ~~~~~---~~iPvV~~~~~~~----~~------~~~~~-V~~d~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~R~ 145 (305)
T 3g1w_A 80 NKAVD---AGIPIVLFDSGAP----DS------HAHSF-LGTNNYNAGMNAAYKMAELLDGEGEVAVITLPNQLNHQERT 145 (305)
T ss_dssp HHHHH---TTCCEEEESSCCT----TS------CCSCE-EECCHHHHHHHHHHHHHHHTTTCEEEEEEECTTCHHHHHHH
T ss_pred HHHHH---CCCcEEEECCCCC----CC------ceeEE-ECcCHHHHHHHHHHHHHHHhCCCcEEEEEeCCCcccHHHHH
Confidence 54544 3588999986431 11 2 222 333322 3455566666653345789999876432
Q ss_pred hhHHHHHHhCCCeeeEeeeeeeecCCCChHHH-HHHc---CCCCEEEEEC
Q 026235 191 NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTV-LKQA---LSIPVVAVAS 236 (241)
Q Consensus 191 ~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~-~~~l---~~id~IvFtS 236 (241)
.-+.+.|++.|..+....++..........+. .+.+ ..+|+|+-.+
T Consensus 146 ~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~ 195 (305)
T 3g1w_A 146 TGFKETLEAEFPAIEVIAVEDGRGDSLHSRRVAHQLLEDYPNLAGIFATE 195 (305)
T ss_dssp HHHHHHHHHHCTTEEEEEEEECTTCHHHHHHHHHHHHHHCTTEEEEEESS
T ss_pred HHHHHHHHhhCCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCceEEEECC
Confidence 23667788888887776665443222111122 2222 3677776544
No 27
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=91.66 E-value=0.59 Score=38.83 Aligned_cols=134 Identities=13% Similarity=0.078 Sum_probs=74.3
Q ss_pred CCeEEEeCCCCC-------hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhc--CCCccEEEEeCHH--HHHHHH
Q 026235 50 NPKVVVTRERGK-------NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFL 118 (241)
Q Consensus 50 g~~VLitR~~~~-------~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~--aV~~f~ 118 (241)
.++|.+.-+... ...+.+.++++|+++..... ..+.+...+.++. -..+|.||+.... ......
T Consensus 5 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~ 79 (291)
T 3l49_A 5 GKTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDA-----GRNDQTQVSQIQTLIAQKPDAIIEQLGNLDVLNPWL 79 (291)
T ss_dssp TCEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEEC-----TTCHHHHHHHHHHHHHHCCSEEEEESSCHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEcC-----CCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHH
Confidence 455655555432 23455667888988775521 1222221222221 1579999988653 555555
Q ss_pred HHHHhcCCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCC-CHHHHHHHhhhCCCCccEEEEEccCCCch------
Q 026235 119 EAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKASN------ 191 (241)
Q Consensus 119 ~~l~~~~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~-t~e~L~~~l~~~~~~~~~iL~~~g~~~~~------ 191 (241)
+.+.+ .+++++++|... .. ++.. +..+.+ .+..+++.|.+.....++++++.|.....
T Consensus 80 ~~~~~---~~iPvV~~~~~~-----~~------~~~~-V~~D~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~R~ 144 (291)
T 3l49_A 80 QKIND---AGIPLFTVDTAT-----PH------AINN-TTSNNYSIGAELALQMVADLGGKGNVLVFNGFYSVPVCKIRY 144 (291)
T ss_dssp HHHHH---TTCCEEEESCCC-----TT------CSEE-EEECHHHHHHHHHHHHHHHHTTCEEEEEECSCTTSHHHHHHH
T ss_pred HHHHH---CCCcEEEecCCC-----CC------cCce-EecChHHHHHHHHHHHHHHcCCCceEEEEeCCCCCchHHHHH
Confidence 55554 358899998653 12 3322 333322 34556667766212347999998765432
Q ss_pred -hHHHHHHhC-CCe
Q 026235 192 -EIEEGLSNR-GFE 203 (241)
Q Consensus 192 -~L~~~L~~~-G~~ 203 (241)
-+.+.|++. |++
T Consensus 145 ~gf~~~l~~~~~~~ 158 (291)
T 3l49_A 145 DQMKYVLEAFPDVK 158 (291)
T ss_dssp HHHHHHHHTCTTEE
T ss_pred HHHHHHHHHCCCCE
Confidence 355677777 565
No 28
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=91.59 E-value=2.6 Score=30.71 Aligned_cols=115 Identities=14% Similarity=0.125 Sum_probs=63.9
Q ss_pred CCeEEEeCCCCChHHHHHHHHHCCCcEEEeceE-----------E--EeeCC--CchHHHHHHhcCCCccEEEEeCHHHH
Q 026235 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLI-----------Q--HAQGP--DTDRLSSVLNADTIFDWIIITSPEAG 114 (241)
Q Consensus 50 g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~-----------~--~~~~~--~~~~l~~~l~~l~~~d~IiFTS~~aV 114 (241)
+++|+|+....-...+.+.|.+.|.++..+.-- . ....+ +.+.+.+. .+.+.|.|+.+.+..-
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~--~~~~~d~vi~~~~~~~ 81 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDA--GIEDADMYIAVTGKEE 81 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHT--TTTTCSEEEECCSCHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHc--CcccCCEEEEeeCCch
Confidence 467888866545667777787778766543210 0 00001 11111111 2467899988876432
Q ss_pred H--HHHHHHHhcCCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhh
Q 026235 115 S--VFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (241)
Q Consensus 115 ~--~f~~~l~~~~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~ 172 (241)
. .+.......+...+-+.+-++...+.+++. |+...+.|+...+..+.+.+.
T Consensus 82 ~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~------g~~~v~~p~~~~~~~~~~~~~ 135 (140)
T 1lss_A 82 VNLMSSLLAKSYGINKTIARISEIEYKDVFERL------GVDVVVSPELIAANYIEKLIE 135 (140)
T ss_dssp HHHHHHHHHHHTTCCCEEEECSSTTHHHHHHHT------TCSEEECHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCEEEEEecCHhHHHHHHHc------CCCEEECHHHHHHHHHHHHhc
Confidence 2 223334444433444455677778888888 987767776656666665553
No 29
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=91.27 E-value=3.1 Score=30.02 Aligned_cols=110 Identities=14% Similarity=0.160 Sum_probs=68.0
Q ss_pred CCCCCCeEEEeCCCC-ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhc
Q 026235 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA 124 (241)
Q Consensus 46 ~~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~ 124 (241)
....+++|||.-... ....+...|++.|+++... .+..+....+.. ..+|.|+....++.+ ++..+.+.
T Consensus 14 ~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~al~~l~~-~~~dlvi~~~~~g~~-~~~~l~~~ 83 (137)
T 2pln_A 14 VPRGSMRVLLIEKNSVLGGEIEKGLNVKGFMADVT--------ESLEDGEYLMDI-RNYDLVMVSDKNALS-FVSRIKEK 83 (137)
T ss_dssp -CTTCSEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------SCHHHHHHHHHH-SCCSEEEECSTTHHH-HHHHHHHH
T ss_pred cCCCCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEe--------CCHHHHHHHHHc-CCCCEEEEcCccHHH-HHHHHHhc
Confidence 345678899887764 3566888898888765422 233444444533 578999944445554 34445544
Q ss_pred CCC-CcEEEEeCHH----HHHHHHHhhhccCCCCceeecCCCC-CHHHHHHHhhhC
Q 026235 125 GTP-NVRIGVVGAG----TASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKN 174 (241)
Q Consensus 125 ~~~-~~~i~aIG~~----Ta~~L~~~~~~~~~Gi~~~~~p~~~-t~e~L~~~l~~~ 174 (241)
. +++++++... ....+.+. |.. ++..+.. +.+.|.+.|...
T Consensus 84 --~~~~~ii~ls~~~~~~~~~~~~~~------g~~-~~l~kP~~~~~~l~~~i~~~ 130 (137)
T 2pln_A 84 --HSSIVVLVSSDNPTSEEEVHAFEQ------GAD-DYIAKPYRSIKALVARIEAR 130 (137)
T ss_dssp --STTSEEEEEESSCCHHHHHHHHHT------TCS-EEEESSCSCHHHHHHHHHHH
T ss_pred --CCCccEEEEeCCCCHHHHHHHHHc------CCc-eeeeCCCCCHHHHHHHHHHH
Confidence 4 6777766432 23334455 765 4667778 999999888654
No 30
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=91.08 E-value=3.7 Score=30.53 Aligned_cols=109 Identities=13% Similarity=0.092 Sum_probs=67.2
Q ss_pred CCCeEEEeCCCC-ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeC----HHHHHHHHHHHHh
Q 026235 49 SNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVFLEAWKE 123 (241)
Q Consensus 49 ~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS----~~aV~~f~~~l~~ 123 (241)
.+++|||.-... ....+.+.|++.|+++... .+..+..+.+. -..+|.|++-- .++.+. +..+.+
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~al~~l~-~~~~dlii~D~~l~~~~g~~~-~~~lr~ 75 (154)
T 3gt7_A 6 RAGEILIVEDSPTQAEHLKHILEETGYQTEHV--------RNGREAVRFLS-LTRPDLIISDVLMPEMDGYAL-CRWLKG 75 (154)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEE--------SSHHHHHHHHT-TCCCSEEEEESCCSSSCHHHH-HHHHHH
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHCCCEEEEe--------CCHHHHHHHHH-hCCCCEEEEeCCCCCCCHHHH-HHHHHh
Confidence 467899987764 4567888899889765432 23444445553 36799988853 345544 344544
Q ss_pred cC-CCCcEEEEeC-HH---HHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhC
Q 026235 124 AG-TPNVRIGVVG-AG---TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (241)
Q Consensus 124 ~~-~~~~~i~aIG-~~---Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~ 174 (241)
.. .++++++++. .. ....+.+. |.. ++..+..+.+.|.+.+...
T Consensus 76 ~~~~~~~pii~~s~~~~~~~~~~~~~~------g~~-~~l~KP~~~~~l~~~i~~~ 124 (154)
T 3gt7_A 76 QPDLRTIPVILLTILSDPRDVVRSLEC------GAD-DFITKPCKDVVLASHVKRL 124 (154)
T ss_dssp STTTTTSCEEEEECCCSHHHHHHHHHH------CCS-EEEESSCCHHHHHHHHHHH
T ss_pred CCCcCCCCEEEEECCCChHHHHHHHHC------CCC-EEEeCCCCHHHHHHHHHHH
Confidence 32 3566666653 22 23334455 865 5777788999998887643
No 31
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=90.95 E-value=2.3 Score=31.51 Aligned_cols=116 Identities=14% Similarity=0.141 Sum_probs=68.2
Q ss_pred CCCeEEEeCCCCChHHHHHHHHHCCCcEEEece------------EEEeeCC--CchHHHHHHhcCCCccEEEEeCHHHH
Q 026235 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPL------------IQHAQGP--DTDRLSSVLNADTIFDWIIITSPEAG 114 (241)
Q Consensus 49 ~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~------------~~~~~~~--~~~~l~~~l~~l~~~d~IiFTS~~aV 114 (241)
.+++|+|+....-+..+.+.|.+.|+++..+-- +.....+ +.+.+.+ . .+.+.|+||.+.++--
T Consensus 5 ~~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~-~-~~~~~d~vi~~~~~~~ 82 (141)
T 3llv_A 5 GRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRS-L-DLEGVSAVLITGSDDE 82 (141)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHH-S-CCTTCSEEEECCSCHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHh-C-CcccCCEEEEecCCHH
Confidence 356788887755567888888888888765421 1111111 1122222 1 3467899999887433
Q ss_pred HHH--HHHHHhcCCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhh
Q 026235 115 SVF--LEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (241)
Q Consensus 115 ~~f--~~~l~~~~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~ 172 (241)
... ...+++.+...+-+-+-.+.-.+.|++. |+...+.|....+..|...+.
T Consensus 83 ~n~~~~~~a~~~~~~~iia~~~~~~~~~~l~~~------G~~~vi~p~~~~~~~l~~~i~ 136 (141)
T 3llv_A 83 FNLKILKALRSVSDVYAIVRVSSPKKKEEFEEA------GANLVVLVADAVKQAFMDKIK 136 (141)
T ss_dssp HHHHHHHHHHHHCCCCEEEEESCGGGHHHHHHT------TCSEEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCceEEEEEcChhHHHHHHHc------CCCEEECHHHHHHHHHHHHHh
Confidence 222 2334444422333344566667888888 998777777666777776654
No 32
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=90.90 E-value=0.59 Score=39.12 Aligned_cols=153 Identities=8% Similarity=0.030 Sum_probs=79.3
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~ 140 (241)
..+.+.++++|+++...+ . ..+.+...+.++. -..+|.||+.+...-....+.+.+ .+++++++|....
T Consensus 36 ~gi~~~a~~~g~~~~~~~---~--~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~l~~---~~iPvV~~~~~~~- 106 (289)
T 2fep_A 36 RGIEDIATMYKYNIILSN---S--DQNMEKELHLLNTMLGKQVDGIVFMGGNITDEHVAEFKR---SPVPIVLAASVEE- 106 (289)
T ss_dssp HHHHHHHHHTTCEEEEEE---C--TTCHHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHH---SSSCEEEESCCCT-
T ss_pred HHHHHHHHHcCCEEEEEe---C--CCCHHHHHHHHHHHHhCCCCEEEEecCCCCHHHHHHHHh---cCCCEEEEccccC-
Confidence 344556778898876432 1 1222221222221 268999999764221223343433 3578999986431
Q ss_pred HHHHhhhccCCCCceeecCCCC-CHHHHHHHhhhCCCCccEEEEEccCC-Cc-------hhHHHHHHhCCCeeeEeeeee
Q 026235 141 IFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAK-AS-------NEIEEGLSNRGFEVVRLNTYT 211 (241)
Q Consensus 141 ~L~~~~~~~~~Gi~~~~~p~~~-t~e~L~~~l~~~~~~~~~iL~~~g~~-~~-------~~L~~~L~~~G~~V~~~~vY~ 211 (241)
.. ++.. +..+.+ ....+++.|.+.. .++|.++.+.. .. .-+.+.|++.|.++....++.
T Consensus 107 ---~~------~~~~-V~~D~~~~g~~a~~~L~~~G--~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~ 174 (289)
T 2fep_A 107 ---QE------ETPS-VAIDYEQAIYDAVKLLVDKG--HTDIAFVSGPMAEPINRSKKLQGYKRALEEANLPFNEQFVAE 174 (289)
T ss_dssp ---TC------CSCE-EECCHHHHHHHHHHHHHHTT--CSSEEEEESCTTSHHHHTTHHHHHHHHHHHTTCCCCGGGEEE
T ss_pred ---CC------CCCE-EEECcHHHHHHHHHHHHHCC--CCeEEEEeCCccccccHHHHHHHHHHHHHHcCCCCChheEee
Confidence 12 3332 333322 3455566676653 46899998865 22 236778889998776543443
Q ss_pred eecCCCChHHHH-HHc---CCCCEEEEEC
Q 026235 212 TEPVHHVDQTVL-KQA---LSIPVVAVAS 236 (241)
Q Consensus 212 ~~~~~~~~~~~~-~~l---~~id~IvFtS 236 (241)
.........+.. +.+ ..+|+|+.++
T Consensus 175 ~~~~~~~~~~~~~~~l~~~~~~~ai~~~~ 203 (289)
T 2fep_A 175 GDYTYDSGLEALQHLMSLDKKPTAILSAT 203 (289)
T ss_dssp CCSCHHHHHHHHHHHTTSSSCCSEEEESS
T ss_pred CCCCHHHHHHHHHHHHcCCCCCCEEEECC
Confidence 221111111222 223 3688877654
No 33
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=90.58 E-value=2 Score=35.66 Aligned_cols=148 Identities=12% Similarity=0.011 Sum_probs=77.2
Q ss_pred HHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHHH
Q 026235 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (241)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~ 141 (241)
.+.+.++++|+++.... . ..+.+...+.++. -..+|.||+.+...-....+.+. .++++++++....
T Consensus 29 gi~~~~~~~g~~~~~~~---~--~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l~----~~iPvV~~~~~~~-- 97 (285)
T 3c3k_A 29 GIEKTAEKNGYRILLCN---T--ESDLARSRSCLTLLSGKMVDGVITMDALSELPELQNII----GAFPWVQCAEYDP-- 97 (285)
T ss_dssp HHHHHHHHTTCEEEEEE---C--TTCHHHHHHHTHHHHTTCCSEEEECCCGGGHHHHHHHH----TTSSEEEESSCCT--
T ss_pred HHHHHHHHcCCEEEEEe---C--CCCHHHHHHHHHHHHhCCCCEEEEeCCCCChHHHHHHh----cCCCEEEEccccC--
Confidence 44556778898875432 1 1222221222221 26899999976432223333343 4588999986421
Q ss_pred HHHhhhccCCCCceeecCCCCC-HHHHHHHhhhCCCCccEEEEEccCCCc-------hhHHHHHHhCCCeeeEeeeeeee
Q 026235 142 FEEVIQSSKCSLDVAFSPSKAT-GKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTE 213 (241)
Q Consensus 142 L~~~~~~~~~Gi~~~~~p~~~t-~e~L~~~l~~~~~~~~~iL~~~g~~~~-------~~L~~~L~~~G~~V~~~~vY~~~ 213 (241)
.. ++.. +..+... ...+++.|.+. ..++|.++.+.... .-+.+.|++.|.++. ++...
T Consensus 98 --~~------~~~~-V~~D~~~~g~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~---~~~~~ 163 (285)
T 3c3k_A 98 --LS------TVSS-VSIDDVAASEYVVDQLVKS--GKKRIALINHDLAYQYAQHRESGYLNRLKFHGLDYS---RISYA 163 (285)
T ss_dssp --TS------SSCE-EECCHHHHHHHHHHHHHHT--TCCCEEEEECCTTSHHHHHHHHHHHHHHHHHTCCCC---EEEEC
T ss_pred --CC------CCCE-EEEChHHHHHHHHHHHHHc--CCCeEEEEeCCCccccHHHHHHHHHHHHHHcCCCce---EeecC
Confidence 12 3322 3333222 34556666665 24689999886532 235677888888766 23222
Q ss_pred cCCCChHH-HHH--Hc---CCCCEEEEEC
Q 026235 214 PVHHVDQT-VLK--QA---LSIPVVAVAS 236 (241)
Q Consensus 214 ~~~~~~~~-~~~--~l---~~id~IvFtS 236 (241)
.......+ +.+ .+ ..+|+|+..+
T Consensus 164 ~~~~~~~~~~~~~~~l~~~~~~~ai~~~~ 192 (285)
T 3c3k_A 164 ENLDYMAGKLATFSLLKSAVKPDAIFAIS 192 (285)
T ss_dssp SSSSHHHHHHHHHHHHSSSSCCSEEEESS
T ss_pred CChHHHHHHHHHHHHHcCCCCCeEEEECC
Confidence 22221222 233 33 3688887654
No 34
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=90.51 E-value=0.59 Score=38.75 Aligned_cols=154 Identities=8% Similarity=-0.038 Sum_probs=77.5
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~ 140 (241)
..+.+.++++|+++..... ..+.+...+.++. -..+|+||+.+...-...++.+.+ ..++++++++....
T Consensus 41 ~gi~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~l~~--~~~iPvV~~~~~~~- 112 (296)
T 3brq_A 41 FHAARMAEEKGRQLLLADG-----KHSAEEERQAIQYLLDLRCDAIMIYPRFLSVDEIDDIID--AHSQPIMVLNRRLR- 112 (296)
T ss_dssp HHHHHHHHHTTCEEEEECC-----TTSHHHHHHHHHHHHHTTCSEEEEECSSSCHHHHHHHHH--TCSSCEEEESCCCS-
T ss_pred HHHHHHHHHCCCEEEEEeC-----CCCHHHHHHHHHHHHhcCCCEEEEecCCCChHHHHHHHh--cCCCCEEEEccccC-
Confidence 3455667788987654321 1222211122221 267999998754322223344443 13578889885421
Q ss_pred HHHHhhhccCCCCceeecCCCCC-HHHHHHHhhhCCCCccEEEEEccCCCc-------hhHHHHHHhCCCeeeEeeeeee
Q 026235 141 IFEEVIQSSKCSLDVAFSPSKAT-GKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTT 212 (241)
Q Consensus 141 ~L~~~~~~~~~Gi~~~~~p~~~t-~e~L~~~l~~~~~~~~~iL~~~g~~~~-------~~L~~~L~~~G~~V~~~~vY~~ 212 (241)
.. ++.. +..+... ...+++.|.+. ..++|.++.+.... .-+.+.|++.|.++....++..
T Consensus 113 ---~~------~~~~-V~~d~~~~~~~a~~~l~~~--G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~ 180 (296)
T 3brq_A 113 ---KN------SSHS-VWCDHKQTSFNAVAELINA--GHQEIAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIANG 180 (296)
T ss_dssp ---SS------GGGE-ECCCHHHHHHHHHHHHHHT--TCCSEEEECCCTTCHHHHHHHHHHHHHHHTTTCCCCGGGEECC
T ss_pred ---CC------CCCE-EEEchHHHHHHHHHHHHHC--CCceEEEEcCCCCCccHHHHHHHHHHHHHHcCCCCChhhEEeC
Confidence 11 2221 2233222 34556666665 34789999886532 2356788888887765434432
Q ss_pred ecCCCChHHH-HHHc---CCCCEEEEEC
Q 026235 213 EPVHHVDQTV-LKQA---LSIPVVAVAS 236 (241)
Q Consensus 213 ~~~~~~~~~~-~~~l---~~id~IvFtS 236 (241)
........+. .+.+ ..+|+|+..+
T Consensus 181 ~~~~~~~~~~~~~~l~~~~~~~ai~~~~ 208 (296)
T 3brq_A 181 KWTPASGAEGVEMLLERGAKFSALVASN 208 (296)
T ss_dssp CSSHHHHHHHHHHHHTC--CCSEEEESS
T ss_pred CCChhHHHHHHHHHHhCCCCCCEEEECC
Confidence 2111101122 2223 3688887654
No 35
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=90.37 E-value=1.7 Score=33.96 Aligned_cols=119 Identities=14% Similarity=0.112 Sum_probs=71.6
Q ss_pred CCCCCeEEEeCCCCChHHHHHHHHHC-CCcEEEece------------EEEeeCC--CchHHHHHHhcCCCccEEEEeCH
Q 026235 47 SNSNPKVVVTRERGKNGKLIKALAKH-RIDCLELPL------------IQHAQGP--DTDRLSSVLNADTIFDWIIITSP 111 (241)
Q Consensus 47 ~l~g~~VLitR~~~~~~~l~~~L~~~-G~~v~~~P~------------~~~~~~~--~~~~l~~~l~~l~~~d~IiFTS~ 111 (241)
++.+++|+|.....-+..+++.|.+. |++|..+-- ......+ +.+.+.+. ..+.++|+||.+++
T Consensus 36 ~~~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~-~~~~~ad~vi~~~~ 114 (183)
T 3c85_A 36 NPGHAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERI-LDTGHVKLVLLAMP 114 (183)
T ss_dssp CCTTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCEEECCTTCHHHHHTB-CSCCCCCEEEECCS
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhc-cCCCCCCEEEEeCC
Confidence 35678899997766678889999998 988765421 0111111 11111111 02467899999776
Q ss_pred HH--HHHHHHHHHhcCCCCcEE--EEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhh
Q 026235 112 EA--GSVFLEAWKEAGTPNVRI--GVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (241)
Q Consensus 112 ~a--V~~f~~~l~~~~~~~~~i--~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~ 173 (241)
+. .......+...+ +..++ -+.++...+.+++. |....+.|....+..|.+.+.+
T Consensus 115 ~~~~~~~~~~~~~~~~-~~~~ii~~~~~~~~~~~l~~~------G~~~vi~p~~~~a~~l~~~~~~ 173 (183)
T 3c85_A 115 HHQGNQTALEQLQRRN-YKGQIAAIAEYPDQLEGLLES------GVDAAFNIYSEAGSGFARHVCK 173 (183)
T ss_dssp SHHHHHHHHHHHHHTT-CCSEEEEEESSHHHHHHHHHH------TCSEEEEHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHc------CCCEEEchHHHHHHHHHHHHHH
Confidence 43 333344444443 23444 34567778888888 9987677766666777766643
No 36
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=90.16 E-value=1.8 Score=31.79 Aligned_cols=117 Identities=19% Similarity=0.270 Sum_probs=63.8
Q ss_pred CCCCeEEEeCCCCChHHHHHHHHHCCCcEEEece------------EEEeeC--CCchHHHHHHhcCCCccEEEEeCHHH
Q 026235 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPL------------IQHAQG--PDTDRLSSVLNADTIFDWIIITSPEA 113 (241)
Q Consensus 48 l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~------------~~~~~~--~~~~~l~~~l~~l~~~d~IiFTS~~a 113 (241)
+.+++|+|+....-+..+.+.|.+.|+++..+-- ...... .+.+.+.+. .+..+|.|+.+.++.
T Consensus 4 ~~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~--~~~~~d~vi~~~~~~ 81 (144)
T 2hmt_A 4 IKNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSL--GIRNFEYVIVAIGAN 81 (144)
T ss_dssp --CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSEEEECCTTCHHHHHTT--TGGGCSEEEECCCSC
T ss_pred CcCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCEEEEeCCCCHHHHHhc--CCCCCCEEEECCCCc
Confidence 3467899998755577888888888877654311 001111 111111111 135688888887752
Q ss_pred --HH-HHHHHHHhcCCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhh
Q 026235 114 --GS-VFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (241)
Q Consensus 114 --V~-~f~~~l~~~~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~ 172 (241)
.. .....+.+.+...+-+.+-++...+.+++. |....+.|....+..|.+.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~------g~~~vi~p~~~~~~~l~~~~~ 137 (144)
T 2hmt_A 82 IQASTLTTLLLKELDIPNIWVKAQNYYHHKVLEKI------GADRIIHPEKDMGVKIAQSLS 137 (144)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCSHHHHHHHHHH------TCSEEECHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc------CCCEEECccHHHHHHHHHHHh
Confidence 22 233334444433222234456666777777 887666666556666666553
No 37
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=90.09 E-value=0.55 Score=38.63 Aligned_cols=127 Identities=10% Similarity=0.012 Sum_probs=67.8
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHh--cCCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN--ADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~--~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~ 140 (241)
..+.+.++++|+++.... . ..+.+...+.++ .-..+|.||+.+...-....+.+.+ .+++++++|....
T Consensus 23 ~gi~~~~~~~g~~~~~~~---~--~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~l~~---~~iPvV~~~~~~~- 93 (275)
T 3d8u_A 23 PSFQQALNKAGYQLLLGY---S--DYSIEQEEKLLSTFLESRPAGVVLFGSEHSQRTHQLLEA---SNTPVLEIAELSS- 93 (275)
T ss_dssp HHHHHHHHHTSCEECCEE---C--TTCHHHHHHHHHHHHTSCCCCEEEESSCCCHHHHHHHHH---HTCCEEEESSSCS-
T ss_pred HHHHHHHHHCCCEEEEEc---C--CCCHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHh---CCCCEEEEeeccC-
Confidence 344567778898765331 1 122222112221 1267999998764322233444433 2578888885321
Q ss_pred HHHHhhhccCCCCceeecCCCC-CHHHHHHHhhhCCCCccEEEEEccCCCc-------hhHHHHHHhCCCeeeEeeee
Q 026235 141 IFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTY 210 (241)
Q Consensus 141 ~L~~~~~~~~~Gi~~~~~p~~~-t~e~L~~~l~~~~~~~~~iL~~~g~~~~-------~~L~~~L~~~G~~V~~~~vY 210 (241)
.. ++.. +..+.+ .+..+++.|.+. ..++|.++.+.... .-+.+.|+++|.++....++
T Consensus 94 ---~~------~~~~-V~~d~~~~~~~a~~~L~~~--G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~ 159 (275)
T 3d8u_A 94 ---KA------SYLN-IGVDHFEVGKACTRHLIEQ--GFKNVGFIGARGNHSTLQRQLHGWQSAMIENYLTPDHFLTT 159 (275)
T ss_dssp ---SS------SSEE-ECBCHHHHHHHHHHHHHTT--TCCCEEEEECSCSSHHHHHHHHHHHHHHHHTTCCCCCEEEC
T ss_pred ---CC------CCCE-EEEChHHHHHHHHHHHHHC--CCCeEEEEcCCCCCchHHHHHHHHHHHHHHcCCCCCccEEE
Confidence 12 3321 233322 234556666654 24689999886432 23667888899876654444
No 38
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=89.77 E-value=1.1 Score=37.10 Aligned_cols=153 Identities=12% Similarity=0.014 Sum_probs=81.9
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHHHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~L 142 (241)
..+.+.++++|+++.....-.- ......+.+.+ .-..+|+||+.+...-.. ... +....+++++++|...
T Consensus 32 ~gi~~~a~~~g~~~~~~~~~~~--~~~~~~~~~~l-~~~~vdgiIi~~~~~~~~--~~~-~~~~~~iPvV~~~~~~---- 101 (289)
T 3g85_A 32 RGLQSKLAKQNYNYNVVICPYK--TDCLHLEKGIS-KENSFDAAIIANISNYDL--EYL-NKASLTLPIILFNRLS---- 101 (289)
T ss_dssp HHHHHHHHHTTTCSEEEEEEEC--TTCGGGCGGGS-TTTCCSEEEESSCCHHHH--HHH-HHCCCSSCEEEESCCC----
T ss_pred HHHHHHHHHcCCeEEEEecCCC--chhHHHHHHHH-hccCCCEEEEecCCcccH--HHH-HhccCCCCEEEECCCC----
Confidence 4455677888998875432211 11111111222 126899999987654331 111 1123578999999631
Q ss_pred HHhhhccCCCCceeecCCC-CCHHHHHHHhhhCCCCccEEEEEccCCCc-------hhHHHHHHhCCCeeeEeeeeeeec
Q 026235 143 EEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTEP 214 (241)
Q Consensus 143 ~~~~~~~~~Gi~~~~~p~~-~t~e~L~~~l~~~~~~~~~iL~~~g~~~~-------~~L~~~L~~~G~~V~~~~vY~~~~ 214 (241)
- ++.. +..+. .....+++.|.+.. .++|.++.+.... .-+.+.|++.|..+....++....
T Consensus 102 --~------~~~~-V~~D~~~~~~~a~~~L~~~G--~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~ 170 (289)
T 3g85_A 102 --N------KYSS-VNVDNYKMGEKASLLFAKKR--YKSAAAILTESLNDAMDNRNKGFIETCHKNGIKISENHIIAAEN 170 (289)
T ss_dssp --S------SSEE-EEECHHHHHHHHHHHHHHTT--CCBCEEEECCCSSHHHHHHHHHHHHHHHHTTCBCCGGGEEECCS
T ss_pred --C------CCCE-EEeCHHHHHHHHHHHHHHcC--CCEEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhheeccCC
Confidence 2 3332 33332 23455677776653 4689999886543 236678889998776544443222
Q ss_pred CCCChHH-HHHHc---CCCCEEEEEC
Q 026235 215 VHHVDQT-VLKQA---LSIPVVAVAS 236 (241)
Q Consensus 215 ~~~~~~~-~~~~l---~~id~IvFtS 236 (241)
......+ +.+.+ ..+|+|+.++
T Consensus 171 ~~~~~~~~~~~~l~~~~~~~ai~~~~ 196 (289)
T 3g85_A 171 SIHGGVDAAKKLMKLKNTPKALFCNS 196 (289)
T ss_dssp SHHHHHHHHHHHTTSSSCCSEEEESS
T ss_pred CHHHHHHHHHHHHcCCCCCcEEEEcC
Confidence 1111112 22223 3688887654
No 39
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=89.27 E-value=0.39 Score=39.95 Aligned_cols=153 Identities=7% Similarity=0.019 Sum_probs=82.2
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchH---HHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDR---LSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTA 139 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~---l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta 139 (241)
..+.+.++++|+++.....- .+.+. +.+.+ .-..+|+||+.+...-....+.+.+ .+++++++|....
T Consensus 33 ~gi~~~a~~~g~~~~~~~~~-----~~~~~~~~~~~~~-~~~~vdgiIi~~~~~~~~~~~~l~~---~~iPvV~~~~~~~ 103 (292)
T 3k4h_A 33 RGISSFAHVEGYALYMSTGE-----TEEEIFNGVVKMV-QGRQIGGIILLYSRENDRIIQYLHE---QNFPFVLIGKPYD 103 (292)
T ss_dssp HHHHHHHHHTTCEEEECCCC-----SHHHHHHHHHHHH-HTTCCCEEEESCCBTTCHHHHHHHH---TTCCEEEESCCSS
T ss_pred HHHHHHHHHcCCEEEEEeCC-----CCHHHHHHHHHHH-HcCCCCEEEEeCCCCChHHHHHHHH---CCCCEEEECCCCC
Confidence 34556778899887654321 11121 22222 2368999999765543444454544 3578888886421
Q ss_pred HHHHHhhhccCCCCceeecCCCC-CHHHHHHHhhhCCCCccEEEEEccCCCc-------hhHHHHHHhCCCeeeEeeeee
Q 026235 140 SIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYT 211 (241)
Q Consensus 140 ~~L~~~~~~~~~Gi~~~~~p~~~-t~e~L~~~l~~~~~~~~~iL~~~g~~~~-------~~L~~~L~~~G~~V~~~~vY~ 211 (241)
.. . ++.. +..+.+ ....+++.|.+.. .++|.++.|.... .-+.+.|++.|..+....++.
T Consensus 104 ~~---~------~~~~-V~~D~~~~g~~a~~~L~~~G--~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~ 171 (292)
T 3k4h_A 104 RK---D------EITY-VDNDNYTAAREVAEYLISLG--HKQIAFIGGGSDLLVTRDRLAGMSDALKLADIVLPKEYILH 171 (292)
T ss_dssp CT---T------TSCE-EECCHHHHHHHHHHHHHHTT--CCCEEEEESCTTBHHHHHHHHHHHHHHHHTTCCCCGGGEEE
T ss_pred CC---C------CCCE-EEECcHHHHHHHHHHHHHCC--CceEEEEeCcccchhHHHHHHHHHHHHHHcCCCCChheEEe
Confidence 10 1 1222 233322 3455666676653 4689999887543 236678888998776544443
Q ss_pred eecCCCChHH-HHHHc---CCCCEEEEEC
Q 026235 212 TEPVHHVDQT-VLKQA---LSIPVVAVAS 236 (241)
Q Consensus 212 ~~~~~~~~~~-~~~~l---~~id~IvFtS 236 (241)
.........+ +.+.+ ..+|+|+.++
T Consensus 172 ~~~~~~~~~~~~~~~l~~~~~~~ai~~~~ 200 (292)
T 3k4h_A 172 FDFSRESGQQAVEELMGLQQPPTAIMATD 200 (292)
T ss_dssp CCSSHHHHHHHHHHHHTSSSCCSEEEESS
T ss_pred cCCCHHHHHHHHHHHHcCCCCCcEEEEcC
Confidence 2221111112 22223 3688887654
No 40
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=89.23 E-value=1 Score=38.47 Aligned_cols=153 Identities=10% Similarity=-0.000 Sum_probs=79.5
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhc--CCCccEEEEeCHH-HHHHHHHHHHhcCCCCcEEEEeCHHHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE-AGSVFLEAWKEAGTPNVRIGVVGAGTA 139 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~-aV~~f~~~l~~~~~~~~~i~aIG~~Ta 139 (241)
..+.+.++++|+++.... . ..+.+...+.++. -..+|.||+.+.. .-..+...+.+ .+++++++|....
T Consensus 83 ~gi~~~a~~~g~~~~~~~---~--~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~---~~iPvV~~~~~~~ 154 (338)
T 3dbi_A 83 FHAARMAEEKGRQLLLAD---G--KHSAEEERQAIQYLLDLRCDAIMIYPRFLSVDEIDDIIDA---HSQPIMVLNRRLR 154 (338)
T ss_dssp HHHHHHHHHTTCEEEEEE---C--TTSHHHHHHHHHHHHHTTCSEEEECCSSSCHHHHHHHHHH---CSSCEEEESSCCS
T ss_pred HHHHHHHHHCCCEEEEEe---C--CCChHHHHHHHHHHHhCCCCEEEEeCCCCChHHHHHHHHc---CCCCEEEEcCCCC
Confidence 345567788998876543 1 1222211112211 2689999997643 22334444443 2477888885431
Q ss_pred HHHHHhhhccCCCCceeecCCCC-CHHHHHHHhhhCCCCccEEEEEccCCCc-------hhHHHHHHhCCCeeeEeeeee
Q 026235 140 SIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYT 211 (241)
Q Consensus 140 ~~L~~~~~~~~~Gi~~~~~p~~~-t~e~L~~~l~~~~~~~~~iL~~~g~~~~-------~~L~~~L~~~G~~V~~~~vY~ 211 (241)
. . ++.. +..+.+ .....++.|.+.. .++|.++.|.... .-+.+.|++.|.++....++.
T Consensus 155 ~----~------~~~~-V~~D~~~~~~~a~~~L~~~G--~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~ 221 (338)
T 3dbi_A 155 K----N------SSHS-VWCDHKQTSFNAVAELINAG--HQEIAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIAN 221 (338)
T ss_dssp S----S------GGGE-ECBCHHHHHHHHHHHHHHTT--CCSEEEECCCTTCHHHHHHHHHHHHHHHHTTCCCCGGGEEC
T ss_pred C----C------CCCE-EEEChHHHHHHHHHHHHHCC--CCEEEEEeCCCCCccHHHHHHHHHHHHHHCCCCCCcceEEe
Confidence 1 1 2221 222322 3345566666653 4689999886443 236678889998876554443
Q ss_pred eecCCCChHHHHH-Hc---CCCCEEEEEC
Q 026235 212 TEPVHHVDQTVLK-QA---LSIPVVAVAS 236 (241)
Q Consensus 212 ~~~~~~~~~~~~~-~l---~~id~IvFtS 236 (241)
.........+..+ .+ ..+|+|+.++
T Consensus 222 ~~~~~~~~~~~~~~ll~~~~~~~ai~~~n 250 (338)
T 3dbi_A 222 GKWTPASGAEGVEMLLERGAKFSALVASN 250 (338)
T ss_dssp CCSSHHHHHHHHHHHHHTTCCCSEEEESS
T ss_pred CCCCHHHHHHHHHHHHcCCCCCeEEEECC
Confidence 3222111112222 22 4688887654
No 41
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=89.20 E-value=2.1 Score=32.49 Aligned_cols=118 Identities=9% Similarity=0.012 Sum_probs=69.3
Q ss_pred CCCCCCeEEEeCCCCChHHHHHHHHHCCCcEEEeceE-------------EEeeCCCchHHHHHHhc--CCCccEEEEeC
Q 026235 46 ASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLI-------------QHAQGPDTDRLSSVLNA--DTIFDWIIITS 110 (241)
Q Consensus 46 ~~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~-------------~~~~~~~~~~l~~~l~~--l~~~d~IiFTS 110 (241)
....+++|+|.....-+..+.+.|.+.|+++..+--- ..... +... .+.+.. +..+|+||.+.
T Consensus 15 ~~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~-d~~~-~~~l~~~~~~~ad~Vi~~~ 92 (155)
T 2g1u_A 15 KKQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVG-DAAE-FETLKECGMEKADMVFAFT 92 (155)
T ss_dssp --CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEES-CTTS-HHHHHTTTGGGCSEEEECS
T ss_pred cccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEe-cCCC-HHHHHHcCcccCCEEEEEe
Confidence 3456789999987666778899999999877654210 01111 1100 111221 45789999887
Q ss_pred HHHH--HHHHHHHHhcCCCCcEE--EEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhh
Q 026235 111 PEAG--SVFLEAWKEAGTPNVRI--GVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (241)
Q Consensus 111 ~~aV--~~f~~~l~~~~~~~~~i--~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~ 173 (241)
++.- ......+.... ...++ .+-++...+.+++. |+. .+.|....+..|.+.|.+
T Consensus 93 ~~~~~~~~~~~~~~~~~-~~~~iv~~~~~~~~~~~l~~~------G~~-vi~p~~~~a~~l~~~l~~ 151 (155)
T 2g1u_A 93 NDDSTNFFISMNARYMF-NVENVIARVYDPEKIKIFEEN------GIK-TICPAVLMIEKVKEFIIG 151 (155)
T ss_dssp SCHHHHHHHHHHHHHTS-CCSEEEEECSSGGGHHHHHTT------TCE-EECHHHHHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHC------CCc-EEcHHHHHHHHHHHHHhc
Confidence 7532 22233333311 23333 34577778888888 998 677776677777766653
No 42
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=88.91 E-value=0.88 Score=37.97 Aligned_cols=152 Identities=8% Similarity=0.049 Sum_probs=77.3
Q ss_pred HHHHHHHHCCCcEEEeceEEEeeCCCc-h----HHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHH
Q 026235 64 KLIKALAKHRIDCLELPLIQHAQGPDT-D----RLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGT 138 (241)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~-~----~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~T 138 (241)
.+.+.++++|+++..... ....+. . .++..+ -..+|.||+.+...-....+.+.+ .+++++++|...
T Consensus 29 gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~~~~l~--~~~vdgiIi~~~~~~~~~~~~l~~---~~iPvV~~~~~~ 100 (290)
T 2rgy_A 29 QTDLELRAVHRHVVVATG---CGESTPREQALEAVRFLI--GRDCDGVVVISHDLHDEDLDELHR---MHPKMVFLNRAF 100 (290)
T ss_dssp HHHHHHHHTTCEEEEECC---CSSSCHHHHHHHHHHHHH--HTTCSEEEECCSSSCHHHHHHHHH---HCSSEEEESSCC
T ss_pred HHHHHHHHCCCEEEEEeC---CCchhhhhhHHHHHHHHH--hcCccEEEEecCCCCHHHHHHHhh---cCCCEEEEcccc
Confidence 445567788988764332 111111 1 222222 268999999764321233344433 257888998642
Q ss_pred HHHHHHhhhccCCCCceeecCCCC-CHHHHHHHhhhCCCCccEEEEEccCCCc-------hhHHHHHHhCCCeeeEeeee
Q 026235 139 ASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTY 210 (241)
Q Consensus 139 a~~L~~~~~~~~~Gi~~~~~p~~~-t~e~L~~~l~~~~~~~~~iL~~~g~~~~-------~~L~~~L~~~G~~V~~~~vY 210 (241)
.. . ++.. +..+.+ ....+++.|.+. ..++|.++.+.... .-+.+.|++.|.++....++
T Consensus 101 ~~----~------~~~~-V~~D~~~~g~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~ 167 (290)
T 2rgy_A 101 DA----L------PDAS-FCPDHRRGGELAAATLIEH--GHRKLAVISGPFTASDNVERLDGFFDELARHGIARDSVPLI 167 (290)
T ss_dssp TT----S------GGGE-ECCCHHHHHHHHHHHHHHT--TCCSEEEEESCTTCHHHHHHHHHHHHHHHTTTCCGGGSCEE
T ss_pred CC----C------CCCE-EEeCcHHHHHHHHHHHHHC--CCceEEEEeCCCCCccHHHHHHHHHHHHHHcCCCCCcccEE
Confidence 21 1 2221 222322 234556666665 34689999886432 23567788888876544344
Q ss_pred eeecCCCChHHHH-HHc---CCCCEEEEEC
Q 026235 211 TTEPVHHVDQTVL-KQA---LSIPVVAVAS 236 (241)
Q Consensus 211 ~~~~~~~~~~~~~-~~l---~~id~IvFtS 236 (241)
..........+.. +.+ ..+|+|+.++
T Consensus 168 ~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~ 197 (290)
T 2rgy_A 168 ESDFSPEGGYAATCQLLESKAPFTGLFCAN 197 (290)
T ss_dssp ECCSSHHHHHHHHHHHHHHTCCCSEEEESS
T ss_pred ecCCChhHHHHHHHHHHhCCCCCcEEEECC
Confidence 3221111011122 222 4688887654
No 43
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=88.79 E-value=0.72 Score=38.56 Aligned_cols=152 Identities=10% Similarity=0.039 Sum_probs=81.6
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHHHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~L 142 (241)
..+.+.++++|+++.....- ...+.....+.+ .-..+|.||+.+...-....+.+.+ +++++++|....
T Consensus 31 ~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~l-~~~~vdgiIi~~~~~~~~~~~~~~~----~iPvV~i~~~~~--- 99 (289)
T 3k9c_A 31 EQIYAAATRRGYDVMLSAVA---PSRAEKVAVQAL-MRERCEAAILLGTRFDTDELGALAD----RVPALVVARASG--- 99 (289)
T ss_dssp HHHHHHHHHTTCEEEEEEEB---TTBCHHHHHHHH-TTTTEEEEEEETCCCCHHHHHHHHT----TSCEEEESSCCS---
T ss_pred HHHHHHHHHCCCEEEEEeCC---CCHHHHHHHHHH-HhCCCCEEEEECCCCCHHHHHHHHc----CCCEEEEcCCCC---
Confidence 34556778899888765422 111111222222 2368999999875433333443432 688999986432
Q ss_pred HHhhhccCCCCceeecCCCC-CHHHHHHHhhhCCCCccEEEEEccCCCc------hhHHHHHHhCCCeeeEeeeeeeecC
Q 026235 143 EEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS------NEIEEGLSNRGFEVVRLNTYTTEPV 215 (241)
Q Consensus 143 ~~~~~~~~~Gi~~~~~p~~~-t~e~L~~~l~~~~~~~~~iL~~~g~~~~------~~L~~~L~~~G~~V~~~~vY~~~~~ 215 (241)
.. ++.. +..+.+ .+...++.|.+.. .++|.++.+.... .-+.+.|++.|..+....++ ....
T Consensus 100 -~~------~~~~-V~~D~~~~~~~a~~~L~~~G--~~~I~~i~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~-~~~~ 168 (289)
T 3k9c_A 100 -LP------GVGA-VRGDDVAGITLAVDHLTELG--HRNIAHIDGADAPGGADRRAGFLAAMDRHGLSASATVVT-GGTT 168 (289)
T ss_dssp -ST------TSEE-EEECHHHHHHHHHHHHHHTT--CCSEEEECCTTSTTHHHHHHHHHHHHHHTTCGGGEEEEC-CCSS
T ss_pred -CC------CCCE-EEeChHHHHHHHHHHHHHCC--CCcEEEEeCCCCccHHHHHHHHHHHHHHCCCCCCccEEE-CCCC
Confidence 23 4432 333322 3455566676653 4689999886532 24667889999887653333 2211
Q ss_pred CCChHHHH-HHc---CCCCEEEEEC
Q 026235 216 HHVDQTVL-KQA---LSIPVVAVAS 236 (241)
Q Consensus 216 ~~~~~~~~-~~l---~~id~IvFtS 236 (241)
.....+.. +.+ ..+|+|+-++
T Consensus 169 ~~~~~~~~~~~l~~~~~~~ai~~~~ 193 (289)
T 3k9c_A 169 ETEGAEGMHTLLEMPTPPTAVVAFN 193 (289)
T ss_dssp HHHHHHHHHHHHTSSSCCSEEEESS
T ss_pred HHHHHHHHHHHHcCCCCCCEEEECC
Confidence 11111222 223 4688887654
No 44
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=88.72 E-value=1.2 Score=37.04 Aligned_cols=129 Identities=9% Similarity=0.069 Sum_probs=69.5
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHHHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~L 142 (241)
..+.+.++++|+++.....-. .........+.+ .-..+|.||+.+...-....+.+.+ .+++++++|....
T Consensus 28 ~gi~~~a~~~g~~~~~~~~~~--~~~~~~~~~~~l-~~~~vdgiIi~~~~~~~~~~~~l~~---~~iPvV~~~~~~~--- 98 (287)
T 3bbl_A 28 SSMVREAGAVNYFVLPFPFSE--DRSQIDIYRDLI-RSGNVDGFVLSSINYNDPRVQFLLK---QKFPFVAFGRSNP--- 98 (287)
T ss_dssp HHHHHHHHHTTCEEEECCCCS--STTCCHHHHHHH-HTTCCSEEEECSCCTTCHHHHHHHH---TTCCEEEESCCST---
T ss_pred HHHHHHHHHcCCEEEEEeCCC--chHHHHHHHHHH-HcCCCCEEEEeecCCCcHHHHHHHh---cCCCEEEECCcCC---
Confidence 345567788998876543211 111112222233 2368999999764321223343433 3578999986431
Q ss_pred HHhhhccCCCCceeecCCCC-CHHHHHHHhhhCCCCccEEEEEccCCCc-------hhHHHHHHhCCCeeeEeeee
Q 026235 143 EEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTY 210 (241)
Q Consensus 143 ~~~~~~~~~Gi~~~~~p~~~-t~e~L~~~l~~~~~~~~~iL~~~g~~~~-------~~L~~~L~~~G~~V~~~~vY 210 (241)
.. ++.. +..+.. ....+++.|.+.. .++|.++.|.... .-+.+.|++.|+++....++
T Consensus 99 -~~------~~~~-V~~D~~~~g~~a~~~L~~~G--~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~ 164 (287)
T 3bbl_A 99 -DW------DFAW-VDIDGTAGTRQAVEYLIGRG--HRRIAILAWPEDSRVGNDRLQGYLEAMQTAQLPIETGYIL 164 (287)
T ss_dssp -TC------CCCE-EEECHHHHHHHHHHHHHHHT--CCCEEEEECCTTCHHHHHHHHHHHHHHHHTTCCCCGGGEE
T ss_pred -CC------CCCE-EEeccHHHHHHHHHHHHHCC--CCeEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhhEE
Confidence 12 3332 233322 2345566666542 4689999876432 23667788888876543333
No 45
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=88.48 E-value=5.2 Score=28.52 Aligned_cols=111 Identities=12% Similarity=0.096 Sum_probs=64.3
Q ss_pred CCCCeEEEeCCCC-ChHHHHHHHHHCCCc-EEEeceEEEeeCCCchHHHHHHhcCCCccEEEEe----CHHHHHHHHHHH
Q 026235 48 NSNPKVVVTRERG-KNGKLIKALAKHRID-CLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAW 121 (241)
Q Consensus 48 l~g~~VLitR~~~-~~~~l~~~L~~~G~~-v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFT----S~~aV~~f~~~l 121 (241)
+.+++||+.-... ....+.+.|++.|+. +... .+..+....+.....+|.|+.- ..++.+. ...+
T Consensus 3 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~--------~~~~~a~~~~~~~~~~dlvi~D~~~p~~~g~~~-~~~l 73 (129)
T 3h1g_A 3 LGSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEA--------EHGVEAWEKLDANADTKVLITDWNMPEMNGLDL-VKKV 73 (129)
T ss_dssp ---CCEEEECSCHHHHHHHHHHHHHTTCCCEEEE--------SSHHHHHHHHHHCTTCCEEEECSCCSSSCHHHH-HHHH
T ss_pred CCCcEEEEEeCCHHHHHHHHHHHHHcCCcEEEEe--------CCHHHHHHHHHhCCCCCEEEEeCCCCCCCHHHH-HHHH
Confidence 4567899887764 456788889999975 3221 2323333333333468887752 3345553 3444
Q ss_pred Hhc-CCCCcEEEEeCH----HHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhC
Q 026235 122 KEA-GTPNVRIGVVGA----GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (241)
Q Consensus 122 ~~~-~~~~~~i~aIG~----~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~ 174 (241)
.+. ..++++++.+.. .......+. |.. ++..+..+.+.|.+.+...
T Consensus 74 r~~~~~~~~pii~~s~~~~~~~~~~~~~~------g~~-~~l~KP~~~~~L~~~l~~~ 124 (129)
T 3h1g_A 74 RSDSRFKEIPIIMITAEGGKAEVITALKA------GVN-NYIVKPFTPQVLKEKLEVV 124 (129)
T ss_dssp HTSTTCTTCCEEEEESCCSHHHHHHHHHH------TCC-EEEESCCCHHHHHHHHHHH
T ss_pred HhcCCCCCCeEEEEeCCCChHHHHHHHHc------Ccc-EEEeCCCCHHHHHHHHHHH
Confidence 443 234666666542 233344556 866 5777889999999888654
No 46
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=88.46 E-value=1.4 Score=37.60 Aligned_cols=165 Identities=10% Similarity=0.058 Sum_probs=83.1
Q ss_pred CeEEEeCCCCCh-------HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHH
Q 026235 51 PKVVVTRERGKN-------GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAW 121 (241)
Q Consensus 51 ~~VLitR~~~~~-------~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~aV~~f~~~l 121 (241)
.+|.+.-+...+ ..+.+.++++|+++.... . ..+.+...+.++. -..+|.||+.+...-....+.+
T Consensus 64 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~---~--~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l 138 (332)
T 2o20_A 64 TTVGVILPTITSTYFAAITRGVDDIASMYKYNMILAN---S--DNDVEKEEKVLETFLSKQVDGIVYMGSSLDEKIRTSL 138 (332)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEE---C--TTCHHHHHHHHHHHHHTTCSEEEECSSCCCHHHHHHH
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEE---C--CCChHHHHHHHHHHHhCCCCEEEEeCCCCCHHHHHHH
Confidence 456555444322 334556778898876432 1 1222211122221 2679999997642112233334
Q ss_pred HhcCCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCC-HHHHHHHhhhCCCCccEEEEEccCCCc-------hhH
Q 026235 122 KEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKAT-GKILASELPKNGKKKCTVLYPASAKAS-------NEI 193 (241)
Q Consensus 122 ~~~~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t-~e~L~~~l~~~~~~~~~iL~~~g~~~~-------~~L 193 (241)
.+ .+++++.+|.... .. ++.. +..+... +..+++.|.+.. .++|.++.|.... .-+
T Consensus 139 ~~---~~iPvV~~~~~~~----~~------~~~~-V~~D~~~~~~~a~~~L~~~G--~~~I~~i~~~~~~~~~~~R~~Gf 202 (332)
T 2o20_A 139 KN---SRTPVVLVGTIDG----DK------EIPS-VNIDYHLAAYQSTKKLIDSG--NKKIAYIMGSLKDVENTERMVGY 202 (332)
T ss_dssp HH---HCCCEEEESCCCT----TS------CSCE-EECCHHHHHHHHHHHHHHTT--CSSEEEECSCTTSHHHHHHHHHH
T ss_pred Hh---CCCCEEEEccccC----CC------CCCE-EEeChHHHHHHHHHHHHHCC--CCeEEEEeCCcccccHHHHHHHH
Confidence 33 2578888886421 12 3332 3333222 345566776653 4689999886432 235
Q ss_pred HHHHHhCCCeeeEeeeeeeecCCCChHHHHH-Hc-CCCCEEEEEC
Q 026235 194 EEGLSNRGFEVVRLNTYTTEPVHHVDQTVLK-QA-LSIPVVAVAS 236 (241)
Q Consensus 194 ~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~-~l-~~id~IvFtS 236 (241)
.+.|++.|.++....++..........+..+ .+ ..+|+|+..+
T Consensus 203 ~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ai~~~~ 247 (332)
T 2o20_A 203 QEALLEANIEFDENLVFEGNYSYEQGKALAERLLERGATSAVVSH 247 (332)
T ss_dssp HHHHHHTTCCCCGGGEECSCCSHHHHHHHHHHHHHTTCCEEEESC
T ss_pred HHHHHHcCCCCChhhEEeCCCCHHHHHHHHHHHhccCCCEEEECC
Confidence 6788889987764434432111110111222 22 3788877654
No 47
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=88.34 E-value=0.83 Score=37.82 Aligned_cols=154 Identities=10% Similarity=0.025 Sum_probs=76.5
Q ss_pred HHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHHH
Q 026235 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (241)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~ 141 (241)
.+.+.++++|+++.... . ..+.+...+.++. -..+|.||+.+...-....+.+.+ ..+++++++|....
T Consensus 28 gi~~~~~~~g~~~~~~~---~--~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~l~~--~~~iPvV~~~~~~~-- 98 (289)
T 1dbq_A 28 AVEKNCFQKGYTLILGN---A--WNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEE--YRHIPMVVMDWGEA-- 98 (289)
T ss_dssp HHHHHHHHHTCEEEEEE---C--TTCHHHHHHHHHHHHHTTCSEEEEECSCCCHHHHHHHHH--TTTSCEEEEECSSC--
T ss_pred HHHHHHHHcCCeEEEEc---C--CCChHHHHHHHHHHHhCCCCEEEEEeccCCHHHHHHHHh--ccCCCEEEEccCCC--
Confidence 34556677898776421 1 1222222222221 267999998764322223344433 14678888875421
Q ss_pred HHHhhhccCCCCceeecCCCC-CHHHHHHHhhhCCCCccEEEEEccCCCc-------hhHHHHHHhCCCeeeEeeeeeee
Q 026235 142 FEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTE 213 (241)
Q Consensus 142 L~~~~~~~~~Gi~~~~~p~~~-t~e~L~~~l~~~~~~~~~iL~~~g~~~~-------~~L~~~L~~~G~~V~~~~vY~~~ 213 (241)
.. ++...+..+.. ....+++.|.+.. .++|.++.+.... .-+.+.|++.|.++....++...
T Consensus 99 --~~------~~~~~V~~d~~~~~~~~~~~L~~~G--~~~i~~i~~~~~~~~~~~R~~g~~~~l~~~g~~~~~~~~~~~~ 168 (289)
T 1dbq_A 99 --KA------DFTDAVIDNAFEGGYMAGRYLIERG--HREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGD 168 (289)
T ss_dssp --CS------SSCEEEEECHHHHHHHHHHHHHHTT--CCSEEEECCC------CHHHHHHHHHHHHTTCCCCGGGBCCCC
T ss_pred --cc------CcCCEEEeCcHHHHHHHHHHHHHCC--CCeEEEEecCCccccHHHHHHHHHHHHHHCCCCCChHHeEeCC
Confidence 12 32112333322 2455666676653 4689999876321 23677888899876544333221
Q ss_pred cCCCChHHHH-HHc---CCCCEEEEEC
Q 026235 214 PVHHVDQTVL-KQA---LSIPVVAVAS 236 (241)
Q Consensus 214 ~~~~~~~~~~-~~l---~~id~IvFtS 236 (241)
.......+.. +.+ ..+|+|+..+
T Consensus 169 ~~~~~~~~~~~~~l~~~~~~~ai~~~~ 195 (289)
T 1dbq_A 169 FEPESGYRAMQQILSQPHRPTAVFCGG 195 (289)
T ss_dssp SSHHHHHHHHHHHHTSSSCCSEEEESC
T ss_pred CCHHHHHHHHHHHHhCCCCCCEEEECC
Confidence 1111011222 223 3688887654
No 48
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=88.23 E-value=1.8 Score=37.30 Aligned_cols=135 Identities=8% Similarity=0.032 Sum_probs=73.1
Q ss_pred CeEEEeCCCCCh-------HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHH
Q 026235 51 PKVVVTRERGKN-------GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAW 121 (241)
Q Consensus 51 ~~VLitR~~~~~-------~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~aV~~f~~~l 121 (241)
++|.+.-+...+ ..+.+.++++|+.+..... ..+.+...+.++. -..+|.||+.....-....+.+
T Consensus 71 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~~~~~~l 145 (355)
T 3e3m_A 71 GFVGLLLPSLNNLHFAQTAQSLTDVLEQGGLQLLLGYT-----AYSPEREEQLVETMLRRRPEAMVLSYDGHTEQTIRLL 145 (355)
T ss_dssp CEEEEEESCSBCHHHHHHHHHHHHHHHHTTCEEEEEEC-----TTCHHHHHHHHHHHHHTCCSEEEEECSCCCHHHHHHH
T ss_pred CEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeC-----CCChHHHHHHHHHHHhCCCCEEEEeCCCCCHHHHHHH
Confidence 456555554332 3455677888988754321 1122221222211 2689999998654333344444
Q ss_pred HhcCCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCC-CHHHHHHHhhhCCCCccEEEEEccCCCc--------hh
Q 026235 122 KEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS--------NE 192 (241)
Q Consensus 122 ~~~~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~-t~e~L~~~l~~~~~~~~~iL~~~g~~~~--------~~ 192 (241)
.+ .+++++++|... ... .. ..+..+.+ .+..+++.|.+.. .++|.++.+.... .-
T Consensus 146 ~~---~~iPvV~i~~~~----~~~------~~-~~V~~D~~~~~~~a~~~L~~~G--~r~I~~i~~~~~~~~~~~~R~~G 209 (355)
T 3e3m_A 146 QR---ASIPIVEIWEKP----AHP------IG-HTVGFSNERAAYDMTNALLARG--FRKIVFLGEKDDDWTRGAARRAG 209 (355)
T ss_dssp HH---CCSCEEEESSCC----SSC------SS-EEEECCHHHHHHHHHHHHHHTT--CCSEEEEEESSCTTSHHHHHHHH
T ss_pred Hh---CCCCEEEECCcc----CCC------CC-CEEEeChHHHHHHHHHHHHHCC--CCeEEEEccCcccChhHHHHHHH
Confidence 44 357888887431 111 22 12333322 3345566666653 4689988875432 23
Q ss_pred HHHHHHhCCCeeeE
Q 026235 193 IEEGLSNRGFEVVR 206 (241)
Q Consensus 193 L~~~L~~~G~~V~~ 206 (241)
+.+.|++.|..+..
T Consensus 210 f~~al~~~g~~~~~ 223 (355)
T 3e3m_A 210 FKRAMREAGLNPDQ 223 (355)
T ss_dssp HHHHHHHTTSCSCC
T ss_pred HHHHHHHCCcCCCc
Confidence 66788899988774
No 49
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=88.21 E-value=4.4 Score=30.21 Aligned_cols=114 Identities=11% Similarity=0.137 Sum_probs=69.3
Q ss_pred CeEEEeCCCCChHHHHHHHHHCCCcEEEece------------EEEeeCC-CchHHHHHHhcCCCccEEEEeCHHHHHHH
Q 026235 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPL------------IQHAQGP-DTDRLSSVLNADTIFDWIIITSPEAGSVF 117 (241)
Q Consensus 51 ~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~------------~~~~~~~-~~~~l~~~l~~l~~~d~IiFTS~~aV~~f 117 (241)
++|+|.....-+..+++.|.+.|.++..+-. +.....+ ..++..... .+...|++|.+.++.....
T Consensus 8 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a-~i~~ad~vi~~~~~~~~n~ 86 (140)
T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLA-HLECAKWLILTIPNGYEAG 86 (140)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHT-TGGGCSEEEECCSCHHHHH
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhc-CcccCCEEEEECCChHHHH
Confidence 5677777665677888888888887665431 1111111 112221111 3468899998877655443
Q ss_pred --HHHHHhcCCCCcEEEE--eCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhh
Q 026235 118 --LEAWKEAGTPNVRIGV--VGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (241)
Q Consensus 118 --~~~l~~~~~~~~~i~a--IG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~ 172 (241)
...+.... ++.++++ -.+...+.|++. |+...+.|+...++.+++.+.
T Consensus 87 ~~~~~a~~~~-~~~~iiar~~~~~~~~~l~~~------G~d~vi~p~~~~a~~i~~~l~ 138 (140)
T 3fwz_A 87 EIVASARAKN-PDIEIIARAHYDDEVAYITER------GANQVVMGEREIARTMLELLE 138 (140)
T ss_dssp HHHHHHHHHC-SSSEEEEEESSHHHHHHHHHT------TCSEEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHC-CCCeEEEEECCHHHHHHHHHC------CCCEEECchHHHHHHHHHHhh
Confidence 23333332 3455554 467788889998 998878887777777776653
No 50
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=88.09 E-value=1.3 Score=36.95 Aligned_cols=142 Identities=18% Similarity=0.084 Sum_probs=76.7
Q ss_pred CeEEEeCCCCC-------hHHHHHHHHHCCCcEEEeceEEEeeCCCch----HHHHHHhcCCCccEEEEeCHH--HHHHH
Q 026235 51 PKVVVTRERGK-------NGKLIKALAKHRIDCLELPLIQHAQGPDTD----RLSSVLNADTIFDWIIITSPE--AGSVF 117 (241)
Q Consensus 51 ~~VLitR~~~~-------~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~----~l~~~l~~l~~~d~IiFTS~~--aV~~f 117 (241)
.+|.+.-+... ..-+.+.++++|+++.....- ...+.+ .++..+ ...+|+||+.... +....
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~i~~l~--~~~vdgiii~~~~~~~~~~~ 78 (297)
T 3rot_A 4 DKYYLITHGSQDPYWTSLFQGAKKAAEELKVDLQILAPP---GANDVPKQVQFIESAL--ATYPSGIATTIPSDTAFSKS 78 (297)
T ss_dssp CEEEEECSCCCSHHHHHHHHHHHHHHHHHTCEEEEECCS---SSCCHHHHHHHHHHHH--HTCCSEEEECCCCSSTTHHH
T ss_pred EEEEEEecCCCCchHHHHHHHHHHHHHHhCcEEEEECCC---CcCCHHHHHHHHHHHH--HcCCCEEEEeCCCHHHHHHH
Confidence 45555544432 233456677889887754311 001222 233333 1579999987543 22444
Q ss_pred HHHHHhcCCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCC-CHHHHHHHhhhCCCCccEEEEEccCCCc------
Q 026235 118 LEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS------ 190 (241)
Q Consensus 118 ~~~l~~~~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~-t~e~L~~~l~~~~~~~~~iL~~~g~~~~------ 190 (241)
.+.+.+. ++++++++......-... .+. .+..+.+ ....+++.|.+.....++++++.|....
T Consensus 79 ~~~~~~~---giPvV~~~~~~~~~~~~~------~~~-~V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~g~~~~~~~~~R 148 (297)
T 3rot_A 79 LQRANKL---NIPVIAVDTRPKDKTKNP------YLV-FLGSDNLLAGKKLGEKALELTPSAKRALVLNPQPGHIGLEKR 148 (297)
T ss_dssp HHHHHHH---TCCEEEESCCCSCTTTSC------CSC-EEECCHHHHHHHHHHHHHHHCTTCCEEEEEESCTTCHHHHHH
T ss_pred HHHHHHC---CCCEEEEcCCCccccccC------cce-EEccChHHHHHHHHHHHHHhcCCCceEEEEeCCCCcHHHHHH
Confidence 5545443 578888885432100001 222 2333322 3455666666654335799999887543
Q ss_pred -hhHHHHHHhCCCeeeEe
Q 026235 191 -NEIEEGLSNRGFEVVRL 207 (241)
Q Consensus 191 -~~L~~~L~~~G~~V~~~ 207 (241)
.-+.+.|++.|+++..+
T Consensus 149 ~~Gf~~~l~~~g~~~~~~ 166 (297)
T 3rot_A 149 AYGIKTILQDKGIFFEEL 166 (297)
T ss_dssp HHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHhcCCeEEEe
Confidence 34678898999887654
No 51
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=88.03 E-value=0.79 Score=39.14 Aligned_cols=152 Identities=10% Similarity=0.062 Sum_probs=78.4
Q ss_pred HHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcC--CCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHHH
Q 026235 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD--TIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (241)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l--~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~ 141 (241)
.+.+.++++|+++.... . ..+.+...+.++.+ ..+|.||+.+...-...++.+.+ .+++++.+|....
T Consensus 81 gi~~~a~~~g~~~~~~~---~--~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l~~---~~iPvV~~~~~~~-- 150 (332)
T 2hsg_A 81 GIEDIATMYKYNIILSN---S--DQNQDKELHLLNNMLGKQVDGIIFMSGNVTEEHVEELKK---SPVPVVLAASIES-- 150 (332)
T ss_dssp HHHHHHHHHTCEEEEEE---C--CSHHHHHHHHHHHTSCCSSCCEEECCSSCCHHHHHHHTT---SSSCEEEESCCCS--
T ss_pred HHHHHHHHcCCEEEEEe---C--CCChHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHh---CCCCEEEEccccC--
Confidence 34556777898876432 1 11222222233322 67999999764322223333322 4688999986421
Q ss_pred HHHhhhccCCCCceeecCCCC-CHHHHHHHhhhCCCCccEEEEEccCC-Cc-------hhHHHHHHhCCCeeeEeeeeee
Q 026235 142 FEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAK-AS-------NEIEEGLSNRGFEVVRLNTYTT 212 (241)
Q Consensus 142 L~~~~~~~~~Gi~~~~~p~~~-t~e~L~~~l~~~~~~~~~iL~~~g~~-~~-------~~L~~~L~~~G~~V~~~~vY~~ 212 (241)
.. ++.. +..+.+ .+..+++.|.+. ..++|.++.|.. .. .-+.+.|++.|.++....++..
T Consensus 151 --~~------~~~~-V~~D~~~~~~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~ 219 (332)
T 2hsg_A 151 --TN------QIPS-VTIDYEQAAFDAVQSLIDS--GHKNIAFVSGTLEEPINHAKKVKGYKRALTESGLPVRDSYIVEG 219 (332)
T ss_dssp --CT------TSCE-EEECHHHHHHHHHHHHHTT--TCSCEEEEESCTTSHHHHTTHHHHHHHHHHTTTCCCCGGGEEEC
T ss_pred --CC------CCCE-EEEChHHHHHHHHHHHHHC--CCCEEEEEeCCcccCccHHHHHHHHHHHHHHcCCCCChheEEeC
Confidence 12 3322 233322 235556667665 346899998865 32 2367788899987754333332
Q ss_pred ecCCCChHHHHHH-c---CCCCEEEEEC
Q 026235 213 EPVHHVDQTVLKQ-A---LSIPVVAVAS 236 (241)
Q Consensus 213 ~~~~~~~~~~~~~-l---~~id~IvFtS 236 (241)
........+..+. + ..+|+|+..+
T Consensus 220 ~~~~~~~~~~~~~ll~~~~~~~ai~~~n 247 (332)
T 2hsg_A 220 DYTYDSGIEAVEKLLEEDEKPTAIFVGT 247 (332)
T ss_dssp CSSHHHHHHHHHHHHHSSSCCSEEEESS
T ss_pred CCCHHHHHHHHHHHHcCCCCCeEEEECC
Confidence 2111101122222 2 3688877654
No 52
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=87.91 E-value=5.6 Score=28.17 Aligned_cols=106 Identities=13% Similarity=0.101 Sum_probs=64.7
Q ss_pred CeEEEeCCCC-ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEe----CHHHHHHHHHHHHhcC
Q 026235 51 PKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAWKEAG 125 (241)
Q Consensus 51 ~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFT----S~~aV~~f~~~l~~~~ 125 (241)
++||+.-... ....+...|++.|+++... .+..+..+.+ .-..+|.|+.- ..+|.+.. ..+.+..
T Consensus 3 ~~ILivdd~~~~~~~l~~~l~~~g~~v~~~--------~~~~~al~~l-~~~~~dlvllD~~~p~~~g~~~~-~~l~~~~ 72 (122)
T 3gl9_A 3 KKVLLVDDSAVLRKIVSFNLKKEGYEVIEA--------ENGQIALEKL-SEFTPDLIVLXIMMPVMDGFTVL-KKLQEKE 72 (122)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------SSHHHHHHHH-TTBCCSEEEECSCCSSSCHHHHH-HHHHTST
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEe--------CCHHHHHHHH-HhcCCCEEEEeccCCCCcHHHHH-HHHHhcc
Confidence 5788887654 3566788889999876532 2333444445 23578988773 23455543 3344332
Q ss_pred -CCCcEEEEeCH----HHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhh
Q 026235 126 -TPNVRIGVVGA----GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (241)
Q Consensus 126 -~~~~~i~aIG~----~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~ 173 (241)
.++++++.+.. .......+. |.. ++..+..+.+.|.+.+.+
T Consensus 73 ~~~~~pii~~s~~~~~~~~~~~~~~------Ga~-~~l~KP~~~~~L~~~i~~ 118 (122)
T 3gl9_A 73 EWKRIPVIVLTAKGGEEDESLALSL------GAR-KVMRKPFSPSQFIEEVKH 118 (122)
T ss_dssp TTTTSCEEEEESCCSHHHHHHHHHT------TCS-EEEESSCCHHHHHHHHHH
T ss_pred cccCCCEEEEecCCchHHHHHHHhc------Chh-hhccCCCCHHHHHHHHHH
Confidence 34666666542 333444556 876 577788999999988764
No 53
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=87.83 E-value=5.7 Score=28.17 Aligned_cols=111 Identities=9% Similarity=0.016 Sum_probs=63.5
Q ss_pred CCCCCCeEEEeCCCC-ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeC----HHHHHHHHHH
Q 026235 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVFLEA 120 (241)
Q Consensus 46 ~~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS----~~aV~~f~~~ 120 (241)
.+..+++||+.-... ....+.+.|++.|+++... .+..+..+.+ .-..+|.|+.-- .++.+. ...
T Consensus 3 ~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~l-~~~~~dlvi~d~~l~~~~g~~~-~~~ 72 (130)
T 3eod_A 3 QPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLA--------ADGVDALELL-GGFTPDLMICDIAMPRMNGLKL-LEH 72 (130)
T ss_dssp CTTTTCEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------SCHHHHHHHH-TTCCCSEEEECCC-----CHHH-HHH
T ss_pred CCCCCCeEEEEeCCHHHHHHHHHHHHhCCceEEEe--------CCHHHHHHHH-hcCCCCEEEEecCCCCCCHHHH-HHH
Confidence 355678999998765 3567888899999876532 2334444455 335789888753 234433 333
Q ss_pred HHhcCCCCcEEEEeC-HHHH---HHHHHhhhccCCCCceeecCCCC-CHHHHHHHhhhC
Q 026235 121 WKEAGTPNVRIGVVG-AGTA---SIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKN 174 (241)
Q Consensus 121 l~~~~~~~~~i~aIG-~~Ta---~~L~~~~~~~~~Gi~~~~~p~~~-t~e~L~~~l~~~ 174 (241)
+.+.. ++++++.+. .... ..+.+. |.. ++..+.. +.+.|.+.+...
T Consensus 73 l~~~~-~~~~ii~~t~~~~~~~~~~~~~~------g~~-~~l~KP~~~~~~l~~~i~~~ 123 (130)
T 3eod_A 73 IRNRG-DQTPVLVISATENMADIAKALRL------GVE-DVLLKPVKDLNRLREMVFAC 123 (130)
T ss_dssp HHHTT-CCCCEEEEECCCCHHHHHHHHHH------CCS-EEEESCC---CHHHHHHHHH
T ss_pred HHhcC-CCCCEEEEEcCCCHHHHHHHHHc------CCC-EEEeCCCCcHHHHHHHHHHH
Confidence 44432 355555543 3222 333455 876 4666666 677888777654
No 54
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=87.67 E-value=7.3 Score=32.19 Aligned_cols=134 Identities=10% Similarity=0.084 Sum_probs=68.6
Q ss_pred HHHHHHHHHCCC-cEEEeceEEEeeCCCchHHHHHHhc--CCCccEEEEeCHH--HHHHHHHHHHhcCCCCcEEEEeCHH
Q 026235 63 GKLIKALAKHRI-DCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAG 137 (241)
Q Consensus 63 ~~l~~~L~~~G~-~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~--aV~~f~~~l~~~~~~~~~i~aIG~~ 137 (241)
..+.+.++++|+ ++.... . ..+.+...+.++. -..+|.||+.... .....++.+.+ .++++++++..
T Consensus 22 ~gi~~~a~~~g~~~~~~~~---~--~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~~~~---~~iPvV~~~~~ 93 (309)
T 2fvy_A 22 KAIEQDAKAAPDVQLLMND---S--QNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARG---QNVPVVFFNKE 93 (309)
T ss_dssp HHHHHHHHTCTTEEEEEEE---C--TTCHHHHHHHHHHHHHTTCSEEEECCSSGGGHHHHHHHHHT---TTCCEEEESSC
T ss_pred HHHHHHHHhcCCeEEEEec---C--CCCHHHHHHHHHHHHHcCCCEEEEeCCCcchhHHHHHHHHH---CCCcEEEecCC
Confidence 345566778897 654321 1 1222221222221 2679999997643 23344444443 45889998864
Q ss_pred HHHH-HHHhhhccCCCCceeecCCCC-CHHHHHHHhhhC----------CCCccEEEEEccCCCc-------hhHHHHHH
Q 026235 138 TASI-FEEVIQSSKCSLDVAFSPSKA-TGKILASELPKN----------GKKKCTVLYPASAKAS-------NEIEEGLS 198 (241)
Q Consensus 138 Ta~~-L~~~~~~~~~Gi~~~~~p~~~-t~e~L~~~l~~~----------~~~~~~iL~~~g~~~~-------~~L~~~L~ 198 (241)
.... +.... ++. .+..+.. ....+++.|.+. .....+|.++.|.... .-+.+.|+
T Consensus 94 ~~~~~~~~~~-----~~~-~V~~d~~~~g~~~~~~L~~~~~~~~~~~~~g~g~~~i~~i~~~~~~~~~~~R~~gf~~~l~ 167 (309)
T 2fvy_A 94 PSRKALDSYD-----KAY-YVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELN 167 (309)
T ss_dssp CCHHHHHTCT-----TEE-EEECCHHHHHHHHHHHHHHHHHHCGGGCTTCSSSEEEEEEECSTTCHHHHHHHHHHHHHHH
T ss_pred CCcccccccC-----ccE-EEecCHHHHHHHHHHHHHHHHhhcccccccCCCceEEEEEEcCCCCccHHHHHHHHHHHHH
Confidence 3221 11110 111 1233322 234455556551 1233578888876432 23667888
Q ss_pred hCCCeeeEeeee
Q 026235 199 NRGFEVVRLNTY 210 (241)
Q Consensus 199 ~~G~~V~~~~vY 210 (241)
+.|.++....++
T Consensus 168 ~~g~~~~~~~~~ 179 (309)
T 2fvy_A 168 DKGIKTEQLQLD 179 (309)
T ss_dssp HTTCCEEEEEEE
T ss_pred hcCCceEEEEEe
Confidence 999887665444
No 55
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=87.17 E-value=1.3 Score=37.13 Aligned_cols=151 Identities=15% Similarity=0.085 Sum_probs=81.7
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHh--cCCCccEEEEeCHHHHHH-HHHHHHhcCCCCcEEEEeCHHHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN--ADTIFDWIIITSPEAGSV-FLEAWKEAGTPNVRIGVVGAGTA 139 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~--~l~~~d~IiFTS~~aV~~-f~~~l~~~~~~~~~i~aIG~~Ta 139 (241)
..+.+.++++|+++..... . .+.+...+.++ .-..+|+||+.+...-.. ..+.+.+ +++++++|....
T Consensus 35 ~gi~~~a~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~l~~----~iPvV~i~~~~~ 105 (303)
T 3kke_A 35 SGVQMAASGHSTDVLLGQI---D--APPRGTQQLSRLVSEGRVDGVLLQRREDFDDDMLAAVLE----GVPAVTINSRVP 105 (303)
T ss_dssp HHHHHHHHHTTCCEEEEEC---C--STTHHHHHHHHHHHSCSSSEEEECCCTTCCHHHHHHHHT----TSCEEEESCCCT
T ss_pred HHHHHHHHHCCCEEEEEeC---C--CChHHHHHHHHHHHhCCCcEEEEecCCCCcHHHHHHHhC----CCCEEEECCcCC
Confidence 3456677889998875432 1 12221122222 236899999987544333 3444433 588999986532
Q ss_pred HHHHHhhhccCCCCceeecCCCC-CHHHHHHHhhhCCCCccEEEEEccCCCc-------hhHHHHHHhCCCeeeEeeeee
Q 026235 140 SIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYT 211 (241)
Q Consensus 140 ~~L~~~~~~~~~Gi~~~~~p~~~-t~e~L~~~l~~~~~~~~~iL~~~g~~~~-------~~L~~~L~~~G~~V~~~~vY~ 211 (241)
. .. .. +..+.+ .+...++.|.+.. .++|.++.|.... .-+.+.|++.|..+....++.
T Consensus 106 ~---~~--------~~-V~~D~~~~g~~a~~~L~~~G--~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~ 171 (303)
T 3kke_A 106 G---RV--------GS-VILDDQKGGGIATEHLITLG--HSRIAFISGTAIHDTAQRRKEGYLETLASAGLRSEAAWVVD 171 (303)
T ss_dssp T---CC--------CE-EEECHHHHHHHHHHHHHHTT--CCSEEEEESCSSCHHHHHHHHHHHHHHHHTTCCCCGGGEEE
T ss_pred C---CC--------CE-EEECcHHHHHHHHHHHHHCC--CCeEEEEeCCCcCccHHHHHHHHHHHHHHcCCCCCcceEEe
Confidence 2 11 11 223322 3455566666653 4689999886543 236678889998876543433
Q ss_pred eecCCCCh-HHHHHH-----c---CCCCEEEEEC
Q 026235 212 TEPVHHVD-QTVLKQ-----A---LSIPVVAVAS 236 (241)
Q Consensus 212 ~~~~~~~~-~~~~~~-----l---~~id~IvFtS 236 (241)
........ ..+.+. + ..+|+|+.++
T Consensus 172 ~~~~~~~~~~~~~~l~~~~~l~~~~~~~ai~~~n 205 (303)
T 3kke_A 172 AGWEADAGSAALNTLYRGANLGKPDGPTAVVVAS 205 (303)
T ss_dssp CCSSHHHHHHHHHHHHHHHCTTSTTSCSEEEESS
T ss_pred cCCChHHHHHHHHHhcchhhhcCCCCCcEEEECC
Confidence 22211111 123333 4 3688887654
No 56
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=87.01 E-value=1.4 Score=36.37 Aligned_cols=127 Identities=13% Similarity=0.104 Sum_probs=70.8
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhc--CCCccEEEEeCHH-----HHHHHHHHHHhcCCCCcEEEEeC
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE-----AGSVFLEAWKEAGTPNVRIGVVG 135 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~-----aV~~f~~~l~~~~~~~~~i~aIG 135 (241)
..+.+.++++|+++.....- .+.+...+.++. -..+|.||+.... .....++.+.+ .+++++.+|
T Consensus 35 ~gi~~~a~~~g~~~~~~~~~-----~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~~---~~iPvV~~~ 106 (298)
T 3tb6_A 35 RGIESYLSEQGYSMLLTSTN-----NNPDNERRGLENLLSQHIDGLIVEPTKSALQTPNIGYYLNLEK---NGIPFAMIN 106 (298)
T ss_dssp HHHHHHHHHTTCEEEEEECT-----TCHHHHHHHHHHHHHTCCSEEEECCSSTTSCCTTHHHHHHHHH---TTCCEEEES
T ss_pred HHHHHHHHHCCCEEEEEeCC-----CChHHHHHHHHHHHHCCCCEEEEecccccccCCcHHHHHHHHh---cCCCEEEEe
Confidence 34566788899987754321 222221222221 2689999997653 22233444444 358899998
Q ss_pred HHHHHHHHHhhhccCCCCceeecCC-CCCHHHHHHHhhhCCCCccEEEEEccCCCc------hhHHHHHHhCCCeeeEee
Q 026235 136 AGTASIFEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKKCTVLYPASAKAS------NEIEEGLSNRGFEVVRLN 208 (241)
Q Consensus 136 ~~Ta~~L~~~~~~~~~Gi~~~~~p~-~~t~e~L~~~l~~~~~~~~~iL~~~g~~~~------~~L~~~L~~~G~~V~~~~ 208 (241)
.... .. ++.. +..+ ......+++.|.+.. .++|.++.+.... .-+.+.|++.|+.+....
T Consensus 107 ~~~~----~~------~~~~-V~~d~~~~~~~a~~~L~~~G--~~~i~~i~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~ 173 (298)
T 3tb6_A 107 ASYA----EL------AAPS-FTLDDVKGGMMAAEHLLSLG--HTHMMGIFKADDTQGVKRMNGFIQAHRERELFPSPDM 173 (298)
T ss_dssp SCCT----TC------SSCE-EEECHHHHHHHHHHHHHHTT--CCSEEEEEESSSHHHHHHHHHHHHHHHHTTCCCCGGG
T ss_pred cCcC----CC------CCCE-EEeCcHHHHHHHHHHHHHCC--CCcEEEEcCCCCccHHHHHHHHHHHHHHcCCCCCcce
Confidence 6421 12 3332 2233 223455666776653 4688888776542 236678889998765443
Q ss_pred ee
Q 026235 209 TY 210 (241)
Q Consensus 209 vY 210 (241)
++
T Consensus 174 ~~ 175 (298)
T 3tb6_A 174 IV 175 (298)
T ss_dssp EE
T ss_pred EE
Confidence 33
No 57
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*
Probab=86.92 E-value=7.7 Score=34.93 Aligned_cols=164 Identities=13% Similarity=0.023 Sum_probs=92.4
Q ss_pred CeEEEeCCCCChHHHHHHHHHCCC-cEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHH-HHHHHHHhcCCCC
Q 026235 51 PKVVVTRERGKNGKLIKALAKHRI-DCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGS-VFLEAWKEAGTPN 128 (241)
Q Consensus 51 ~~VLitR~~~~~~~l~~~L~~~G~-~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~-~f~~~l~~~~~~~ 128 (241)
++|+++.+- .....+.|++.|+ ++...+- . .+.+++. +.+.++|.+++.|...+. .+++.+ ++
T Consensus 5 ~kil~~~~~--~~~~~~~l~~~~~~~v~~~~~----~-~~~~~l~---~~~~~~d~l~~~~~~~~~~~~l~~~-----~~ 69 (404)
T 1sc6_A 5 IKFLLVEGV--HQKALESLRAAGYTNIEFHKG----A-LDDEQLK---ESIRDAHFIGLRSRTHLTEDVINAA-----EK 69 (404)
T ss_dssp CCEEECSCC--CHHHHHHHHHTTCCCEEECSS----C-CCHHHHH---HHTTSCSEEEECSSCCBCHHHHHHC-----SS
T ss_pred eEEEEeCCC--CHHHHHHHHhCCCcEEEEcCC----C-CCHHHHH---HHhcCCeEEEEcCCCCCCHHHHhhC-----CC
Confidence 578888764 2445577888887 6665431 1 1233343 346889999887753332 223322 33
Q ss_pred cEEEE-eCHHH----HHHHHHhhhccCCCCceeecCCCCCHHHHHHHhh-------h---------------------CC
Q 026235 129 VRIGV-VGAGT----ASIFEEVIQSSKCSLDVAFSPSKATGKILASELP-------K---------------------NG 175 (241)
Q Consensus 129 ~~i~a-IG~~T----a~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~-------~---------------------~~ 175 (241)
+++++ .|-.+ -+++.+. |+.+.-.| ..++++++|... + ..
T Consensus 70 Lk~I~~~~~G~d~iD~~~a~~~------GI~V~n~p-~~n~~~vAE~~~~~~L~~~R~i~~~~~~~~~g~W~~~~~~~~e 142 (404)
T 1sc6_A 70 LVAIGAFAIGTNQVDLDAAAKR------GIPVFNAP-FSNTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSFE 142 (404)
T ss_dssp CCEEEECSSCCTTBCHHHHHHT------TCCEECCT-TTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC-----CCC
T ss_pred CcEEEECCcccCccCHHHHHhC------CCEEEecC-cccHHHHHHHHHHHHHHHHhChHHHHHHHHcCCccccCCCccc
Confidence 44433 33322 4677888 99876555 355555544321 0 11
Q ss_pred CCccEEEEEccCCCchhHHHHHHhCCCeeeEeeeeeeecCCCC-----hHHHHHHcCCCCEEEEECCcc
Q 026235 176 KKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHV-----DQTVLKQALSIPVVAVASPSA 239 (241)
Q Consensus 176 ~~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~-----~~~~~~~l~~id~IvFtSps~ 239 (241)
..|+++.++.-..-...+...|+..|.+|. +|.+.+.... ...+.+.+...|+|++.-|.+
T Consensus 143 l~gktlGiIGlG~IG~~vA~~l~~~G~~V~---~~d~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t 208 (404)
T 1sc6_A 143 ARGKKLGIIGYGHIGTQLGILAESLGMYVY---FYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPEN 208 (404)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHTTCEEE---EECSSCCCCCTTCEECSCHHHHHHHCSEEEECCCSS
T ss_pred cCCCEEEEEeECHHHHHHHHHHHHCCCEEE---EEcCCchhccCCceecCCHHHHHhcCCEEEEccCCC
Confidence 356788777555555678889999997764 4544322110 012223346789999887754
No 58
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=86.78 E-value=6.6 Score=27.82 Aligned_cols=110 Identities=7% Similarity=0.017 Sum_probs=67.4
Q ss_pred CCCeEEEeCCCC-ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeC----HHHHHHHHHHHHh
Q 026235 49 SNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVFLEAWKE 123 (241)
Q Consensus 49 ~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS----~~aV~~f~~~l~~ 123 (241)
.+++||+.-... ....+.+.|++.|+++... .+..+..+.+.. ..+|.|+.-- .++.+ +...+.+
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~l~~-~~~dlii~d~~l~~~~g~~-~~~~l~~ 74 (132)
T 3lte_A 5 QSKRILVVDDDQAMAAAIERVLKRDHWQVEIA--------HNGFDAGIKLST-FEPAIMTLDLSMPKLDGLD-VIRSLRQ 74 (132)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------SSHHHHHHHHHH-TCCSEEEEESCBTTBCHHH-HHHHHHT
T ss_pred CCccEEEEECCHHHHHHHHHHHHHCCcEEEEe--------CCHHHHHHHHHh-cCCCEEEEecCCCCCCHHH-HHHHHHh
Confidence 357899987764 3566888899988866532 233334444433 5789888753 23444 3444544
Q ss_pred cCC-CCcEEEEeCHHHHH---HHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCC
Q 026235 124 AGT-PNVRIGVVGAGTAS---IFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG 175 (241)
Q Consensus 124 ~~~-~~~~i~aIG~~Ta~---~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~ 175 (241)
... +..+++.++..... .+.+. |.. ++..+..+.+.|.+.|.+..
T Consensus 75 ~~~~~~~~ii~~~~~~~~~~~~~~~~------g~~-~~l~kP~~~~~l~~~i~~~~ 123 (132)
T 3lte_A 75 NKVANQPKILVVSGLDKAKLQQAVTE------GAD-DYLEKPFDNDALLDRIHDLV 123 (132)
T ss_dssp TTCSSCCEEEEECCSCSHHHHHHHHH------TCC-EEECSSCCHHHHHHHHHHHH
T ss_pred cCccCCCeEEEEeCCChHHHHHHHHh------ChH-HHhhCCCCHHHHHHHHHHHc
Confidence 332 45677776654332 33455 865 57788899999999987653
No 59
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=86.42 E-value=8.7 Score=28.83 Aligned_cols=114 Identities=16% Similarity=0.109 Sum_probs=66.4
Q ss_pred CCeEEEeCCCCChHHHHHHHHHCCCcEEEece----------------EEEeeCC--CchHHHHHHhcCCCccEEEEeCH
Q 026235 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPL----------------IQHAQGP--DTDRLSSVLNADTIFDWIIITSP 111 (241)
Q Consensus 50 g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~----------------~~~~~~~--~~~~l~~~l~~l~~~d~IiFTS~ 111 (241)
+++|+|.....-+..+.+.|.+.|.++..+-- +.....+ +.+.+.+. .+...|+||.+.+
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a--~i~~ad~vi~~~~ 80 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKA--GIDRCRAILALSD 80 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHH--TTTTCSEEEECSS
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHc--ChhhCCEEEEecC
Confidence 46788887655677888888888887765421 1111111 11223222 3678999999876
Q ss_pred HHHHHHH--HHHHhcCCCCcEEEE--eCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhh
Q 026235 112 EAGSVFL--EAWKEAGTPNVRIGV--VGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (241)
Q Consensus 112 ~aV~~f~--~~l~~~~~~~~~i~a--IG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~ 172 (241)
+.-.... ..+++.. +..++++ -++...+.+++. |....+.|....++.|.+.+.
T Consensus 81 ~d~~n~~~~~~a~~~~-~~~~ii~~~~~~~~~~~l~~~------G~~~vi~p~~~~~~~l~~~~~ 138 (153)
T 1id1_A 81 NDADNAFVVLSAKDMS-SDVKTVLAVSDSKNLNKIKMV------HPDIILSPQLFGSEILARVLN 138 (153)
T ss_dssp CHHHHHHHHHHHHHHT-SSSCEEEECSSGGGHHHHHTT------CCSEEECHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHc------CCCEEEcHHHHHHHHHHHHHh
Confidence 5433332 2222321 3344444 567777888888 998667666556666665554
No 60
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=86.22 E-value=7.7 Score=28.05 Aligned_cols=111 Identities=10% Similarity=0.117 Sum_probs=65.3
Q ss_pred CCCCeEEEeCCCC-ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeC----HHHHHHHHHHHH
Q 026235 48 NSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVFLEAWK 122 (241)
Q Consensus 48 l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS----~~aV~~f~~~l~ 122 (241)
..+++||+.-... ....+...|++.|..... ....+..+..+.+ ....+|.|+.-- .++.+ ++..+.
T Consensus 3 ~~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v------~~~~~~~~a~~~l-~~~~~dlii~D~~l~~~~g~~-~~~~lr 74 (144)
T 3kht_A 3 LRSKRVLVVEDNPDDIALIRRVLDRKDIHCQL------EFVDNGAKALYQV-QQAKYDLIILDIGLPIANGFE-VMSAVR 74 (144)
T ss_dssp --CEEEEEECCCHHHHHHHHHHHHHTTCCEEE------EEESSHHHHHHHH-TTCCCSEEEECTTCGGGCHHH-HHHHHH
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHhcCCCeeE------EEECCHHHHHHHh-hcCCCCEEEEeCCCCCCCHHH-HHHHHH
Confidence 3467899987764 356788889999977331 1123344444455 336789888743 23444 344454
Q ss_pred hc-CCCCcEEEEeCHH----HHHHHHHhhhccCCCCceeecCCCC-CHHHHHHHhhh
Q 026235 123 EA-GTPNVRIGVVGAG----TASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPK 173 (241)
Q Consensus 123 ~~-~~~~~~i~aIG~~----Ta~~L~~~~~~~~~Gi~~~~~p~~~-t~e~L~~~l~~ 173 (241)
+. ..++++++++... ....+.+. |.. ++..+.. +.+.|.+.|..
T Consensus 75 ~~~~~~~~pii~~s~~~~~~~~~~~~~~------ga~-~~l~Kp~~~~~~l~~~i~~ 124 (144)
T 3kht_A 75 KPGANQHTPIVILTDNVSDDRAKQCMAA------GAS-SVVDKSSNNVTDFYGRIYA 124 (144)
T ss_dssp SSSTTTTCCEEEEETTCCHHHHHHHHHT------TCS-EEEECCTTSHHHHHHHHHH
T ss_pred hcccccCCCEEEEeCCCCHHHHHHHHHc------CCC-EEEECCCCcHHHHHHHHHH
Confidence 42 2356667665432 23333445 876 4777778 89999888864
No 61
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=85.23 E-value=8.3 Score=27.50 Aligned_cols=110 Identities=15% Similarity=0.136 Sum_probs=67.9
Q ss_pred CCeEEEeCCCC-ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEe----CHHHHHHHHHHHHhc
Q 026235 50 NPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAWKEA 124 (241)
Q Consensus 50 g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFT----S~~aV~~f~~~l~~~ 124 (241)
..+||+.-... ....+.+.|++.|+++... .+..+....+.....+|.|+.- ..++.+. ...+.+.
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~~~~~~~~dlvi~D~~l~~~~g~~~-~~~l~~~ 77 (136)
T 3hdv_A 7 RPLVLVVDDNAVNREALILYLKSRGIDAVGA--------DGAEEARLYLHYQKRIGLMITDLRMQPESGLDL-IRTIRAS 77 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCCEEEE--------SSHHHHHHHHHHCTTEEEEEECSCCSSSCHHHH-HHHHHTS
T ss_pred CCeEEEECCCHHHHHHHHHHHHHcCceEEEe--------CCHHHHHHHHHhCCCCcEEEEeccCCCCCHHHH-HHHHHhc
Confidence 57899988764 3567888899999876532 2333333444343458888774 2345543 4445443
Q ss_pred CCCCcEEEEeCHH----HHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCC
Q 026235 125 GTPNVRIGVVGAG----TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG 175 (241)
Q Consensus 125 ~~~~~~i~aIG~~----Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~ 175 (241)
..++++++.+... ....+.+. |.. ++..+..+.+.|.+.|.+..
T Consensus 78 ~~~~~~ii~~s~~~~~~~~~~~~~~------g~~-~~l~KP~~~~~l~~~i~~~~ 125 (136)
T 3hdv_A 78 ERAALSIIVVSGDTDVEEAVDVMHL------GVV-DFLLKPVDLGKLLELVNKEL 125 (136)
T ss_dssp TTTTCEEEEEESSCCHHHHHHHHHT------TCS-EEEESSCCHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCChHHHHHHHhC------Ccc-eEEeCCCCHHHHHHHHHHHh
Confidence 2456777665432 23334455 865 57778899999999987653
No 62
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=85.17 E-value=0.83 Score=37.41 Aligned_cols=125 Identities=14% Similarity=0.100 Sum_probs=69.5
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCch----HHHHHHhcCCC-ccEEEEeCH--HHHHHHHHHHHhcCCCCcEEEEeC
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTD----RLSSVLNADTI-FDWIIITSP--EAGSVFLEAWKEAGTPNVRIGVVG 135 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~----~l~~~l~~l~~-~d~IiFTS~--~aV~~f~~~l~~~~~~~~~i~aIG 135 (241)
..+.+.++++|+++.....- ...+.+ .+...+ . .. +|+||+... .......+.+.+ .+++++.+|
T Consensus 20 ~gi~~~~~~~g~~~~~~~~~---~~~~~~~~~~~i~~l~-~-~~~vdgii~~~~~~~~~~~~~~~~~~---~~ipvV~~~ 91 (276)
T 3ksm_A 20 LGAQKAADEAGVTLLHRSTK---DDGDIAGQIQILSYHL-S-QAPPDALILAPNSAEDLTPSVAQYRA---RNIPVLVVD 91 (276)
T ss_dssp HHHHHHHHHHTCEEEECCCS---STTCHHHHHHHHHHHH-H-HSCCSEEEECCSSTTTTHHHHHHHHH---TTCCEEEES
T ss_pred HHHHHHHHHcCCEEEEECCC---CCCCHHHHHHHHHHHH-H-hCCCCEEEEeCCCHHHHHHHHHHHHH---CCCcEEEEe
Confidence 44566777889887754321 111222 233333 2 35 999999873 344455555554 357899998
Q ss_pred HHHHHHHHHhhhccCCCCceeecCCCC-CHHHHHHHhhhCCC--CccEEEEEccCCCc-------hhHHHHHHhC-CCee
Q 026235 136 AGTASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGK--KKCTVLYPASAKAS-------NEIEEGLSNR-GFEV 204 (241)
Q Consensus 136 ~~Ta~~L~~~~~~~~~Gi~~~~~p~~~-t~e~L~~~l~~~~~--~~~~iL~~~g~~~~-------~~L~~~L~~~-G~~V 204 (241)
... ... +....+..+.+ ....+++.|.+... ..+++.++.|.... .-+.+.|++. |+++
T Consensus 92 ~~~----~~~------~~~~~V~~d~~~~g~~~~~~l~~~~~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~ 161 (276)
T 3ksm_A 92 SDL----AGD------AHQGLVATDNYAAGQLAARALLATLDLSKERNIALLRLRAGNASTDQREQGFLDVLRKHDKIRI 161 (276)
T ss_dssp SCC----SSS------CSSEEEECCHHHHHHHHHHHHHHHSCTTSCEEEEECBCCTTCHHHHHHHHHHHHHHTTCTTEEE
T ss_pred cCC----CCC------CcceEEccCHHHHHHHHHHHHHHhcCcCCCceEEEEEcCCCchhHHHHHHHHHHHHHhCCCcEE
Confidence 543 112 32222333322 34555666665532 35789999886543 2356677777 7666
Q ss_pred e
Q 026235 205 V 205 (241)
Q Consensus 205 ~ 205 (241)
.
T Consensus 162 ~ 162 (276)
T 3ksm_A 162 I 162 (276)
T ss_dssp E
T ss_pred E
Confidence 4
No 63
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=84.95 E-value=1.3 Score=37.27 Aligned_cols=121 Identities=10% Similarity=0.004 Sum_probs=69.8
Q ss_pred HHHHHHHHCCCcEEEeceEEEeeCCCch---HHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHH
Q 026235 64 KLIKALAKHRIDCLELPLIQHAQGPDTD---RLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (241)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~---~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~ 140 (241)
.+.+.++++|+++.....- .+.+ .+.+.+ .-..+|.||+.+...-....+.+.+ .+++++.+|...
T Consensus 48 gi~~~a~~~g~~~~~~~~~-----~~~~~~~~~~~~l-~~~~vdgiIi~~~~~~~~~~~~l~~---~~iPvV~i~~~~-- 116 (305)
T 3huu_A 48 GINQACNVRGYSTRMTVSE-----NSGDLYHEVKTMI-QSKSVDGFILLYSLKDDPIEHLLNE---FKVPYLIVGKSL-- 116 (305)
T ss_dssp HHHHHHHHHTCEEEECCCS-----SHHHHHHHHHHHH-HTTCCSEEEESSCBTTCHHHHHHHH---TTCCEEEESCCC--
T ss_pred HHHHHHHHCCCEEEEEeCC-----CChHHHHHHHHHH-HhCCCCEEEEeCCcCCcHHHHHHHH---cCCCEEEECCCC--
Confidence 3455677889887754321 1111 122222 2368999999865433334444444 358899998653
Q ss_pred HHHHhhhccCCCCceeecCCCC-CHHHHHHHhhhCCCCccEEEEEccCCCch-------hHHHHHHhCCCeeeE
Q 026235 141 IFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKASN-------EIEEGLSNRGFEVVR 206 (241)
Q Consensus 141 ~L~~~~~~~~~Gi~~~~~p~~~-t~e~L~~~l~~~~~~~~~iL~~~g~~~~~-------~L~~~L~~~G~~V~~ 206 (241)
... ++.. +..+.+ .+...++.|.+.. .++|.++.|..... -+.+.|++.|..+..
T Consensus 117 --~~~------~~~~-V~~D~~~~g~~a~~~L~~~G--~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~ 179 (305)
T 3huu_A 117 --NYE------NIIH-IDNDNIDAAYQLTQYLYHLG--HRHILFLQESGHYAVTEDRSVGFKQYCDDVKISNDC 179 (305)
T ss_dssp --SST------TCCE-EECCHHHHHHHHHHHHHHTT--CCSEEEEEESSCBHHHHHHHHHHHHHHHHTTCCCCE
T ss_pred --ccc------CCcE-EEeCHHHHHHHHHHHHHHCC--CCeEEEEcCCcccchhHHHHHHHHHHHHHcCCCccc
Confidence 112 3332 333322 3355566666653 46899998865432 356788899988776
No 64
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=84.63 E-value=0.79 Score=39.40 Aligned_cols=152 Identities=11% Similarity=0.058 Sum_probs=79.1
Q ss_pred HHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHHH
Q 026235 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (241)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~ 141 (241)
.+.+.++++|+++.... . ..+.+...+.++. -..+|.||+.....-....+.+.+ .+++++++|...
T Consensus 89 gi~~~a~~~g~~~~~~~---~--~~~~~~~~~~i~~l~~~~vdGiIi~~~~~~~~~~~~l~~---~~iPvV~i~~~~--- 157 (344)
T 3kjx_A 89 GINQVLEDTELQPVVGV---T--DYLPEKEEKVLYEMLSWRPSGVIIAGLEHSEAARAMLDA---AGIPVVEIMDSD--- 157 (344)
T ss_dssp HHHHHHTSSSSEEEEEE---C--TTCHHHHHHHHHHHHTTCCSEEEEECSCCCHHHHHHHHH---CSSCEEEEEECS---
T ss_pred HHHHHHHHCCCEEEEEe---C--CCCHHHHHHHHHHHHhCCCCEEEEECCCCCHHHHHHHHh---CCCCEEEEeCCC---
Confidence 45556777898875331 1 1122222222221 268999999865433334444444 357888886421
Q ss_pred HHHhhhccCCCCceeecCCCC-CHHHHHHHhhhCCCCccEEEEEccCC--Cc------hhHHHHHHhCCCeeeEeeeeee
Q 026235 142 FEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAK--AS------NEIEEGLSNRGFEVVRLNTYTT 212 (241)
Q Consensus 142 L~~~~~~~~~Gi~~~~~p~~~-t~e~L~~~l~~~~~~~~~iL~~~g~~--~~------~~L~~~L~~~G~~V~~~~vY~~ 212 (241)
... +. ..+..+.+ ....+++.|.+.. .++|.++.+.. .. .-+.+.|++.|.++....+|..
T Consensus 158 -~~~------~~-~~V~~D~~~~~~~a~~~L~~~G--~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~ 227 (344)
T 3kjx_A 158 -GKP------VD-AMVGISHRRAGREMAQAILKAG--YRRIGFMGTKMPLDYRARKRFEGFTEVLGKNGVEIEDREFYSG 227 (344)
T ss_dssp -SCC------SS-EEEEECHHHHHHHHHHHHHHHT--CCSCCEEESSTTTCHHHHHHHHHHHHHHHHTTCCCSCEEECSS
T ss_pred -CCC------CC-CEEEECcHHHHHHHHHHHHHCC--CCeEEEEecCcccCccHHHHHHHHHHHHHHcCCCCChheEEeC
Confidence 111 22 12333322 3455566666553 36888887764 11 2366788899988876666543
Q ss_pred ecCCCChHHHH-HHc---CCCCEEEEEC
Q 026235 213 EPVHHVDQTVL-KQA---LSIPVVAVAS 236 (241)
Q Consensus 213 ~~~~~~~~~~~-~~l---~~id~IvFtS 236 (241)
........+.. +.+ ..+|+|+.++
T Consensus 228 ~~~~~~~~~~~~~ll~~~~~~~ai~~~n 255 (344)
T 3kjx_A 228 GSALAKGREMTQAMLERSPDLDFLYYSN 255 (344)
T ss_dssp CCCHHHHHHHHHHHHHHSTTCCEEEESS
T ss_pred CCCHHHHHHHHHHHHhcCCCCCEEEECC
Confidence 22111111222 222 4788887654
No 65
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=84.52 E-value=7.1 Score=27.15 Aligned_cols=111 Identities=14% Similarity=0.131 Sum_probs=64.5
Q ss_pred CCeEEEeCCCC-ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEe-----CHHHHHHHHHHHHh
Q 026235 50 NPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT-----SPEAGSVFLEAWKE 123 (241)
Q Consensus 50 g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFT-----S~~aV~~f~~~l~~ 123 (241)
.++||+.-... ....+...|++.|+++... .+..+..+.+.. ..+|.|+.- ..++.+ +...+.+
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~~~~-~~~dlvi~d~~~~~~~~g~~-~~~~l~~ 74 (127)
T 2gkg_A 5 SKKILIVESDTALSATLRSALEGRGFTVDET--------TDGKGSVEQIRR-DRPDLVVLAVDLSAGQNGYL-ICGKLKK 74 (127)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHTCEEEEE--------CCHHHHHHHHHH-HCCSEEEEESBCGGGCBHHH-HHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCceEEEe--------cCHHHHHHHHHh-cCCCEEEEeCCCCCCCCHHH-HHHHHhc
Confidence 36888887664 3567888888888865422 233333344432 468988863 224444 4444554
Q ss_pred cC-CCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhC
Q 026235 124 AG-TPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (241)
Q Consensus 124 ~~-~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~ 174 (241)
.. .+++++++++....+...+.+ ..|.. ++..+..+.+.|.+.+...
T Consensus 75 ~~~~~~~~ii~~~~~~~~~~~~~~---~~g~~-~~l~kp~~~~~l~~~i~~~ 122 (127)
T 2gkg_A 75 DDDLKNVPIVIIGNPDGFAQHRKL---KAHAD-EYVAKPVDADQLVERAGAL 122 (127)
T ss_dssp STTTTTSCEEEEECGGGHHHHHHS---TTCCS-EEEESSCCHHHHHHHHHHH
T ss_pred CccccCCCEEEEecCCchhHHHHH---HhCcc-hheeCCCCHHHHHHHHHHH
Confidence 32 356777777444433333221 11765 4677788999998887643
No 66
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=83.64 E-value=2.2 Score=36.45 Aligned_cols=128 Identities=11% Similarity=0.057 Sum_probs=67.7
Q ss_pred HHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHHH
Q 026235 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (241)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~ 141 (241)
.+.+.++++|+++... .. ..+.+...+.++. -..+|.||+.+...-....+.+.+ ..+++++++|....
T Consensus 79 gi~~~a~~~g~~~~~~---~~--~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l~~--~~~iPvV~~~~~~~-- 149 (340)
T 1qpz_A 79 AVEKNCFQKGYTLILG---NA--WNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEE--YRHIPMVVMDWGEA-- 149 (340)
T ss_dssp HHHHHHHHTTCEEEEE---EC--TTCHHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHT--TTTSCEEEEEESSC--
T ss_pred HHHHHHHHcCCEEEEE---eC--CCCHHHHHHHHHHHHcCCCCEEEEeCCCCChHHHHHHHh--hCCCCEEEEecccC--
Confidence 3455677889887642 11 1222222222221 267999999764322223333432 24688888885321
Q ss_pred HHHhhhccCCCCceeecCCCC-CHHHHHHHhhhCCCCccEEEEEccCCCc-------hhHHHHHHhCCCeeeEeeee
Q 026235 142 FEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTY 210 (241)
Q Consensus 142 L~~~~~~~~~Gi~~~~~p~~~-t~e~L~~~l~~~~~~~~~iL~~~g~~~~-------~~L~~~L~~~G~~V~~~~vY 210 (241)
.. +....+..+.+ .+..+++.|.+.. .++|.++.|.... .-+.+.|++.|.++....++
T Consensus 150 --~~------~~~~~V~~D~~~~~~~a~~~L~~~G--~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~ 216 (340)
T 1qpz_A 150 --KA------DFTDAVIDNAFEGGYMAGRYLIERG--HREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIV 216 (340)
T ss_dssp --CC------SSSEEEECCHHHHHHHHHHHHHHHT--CCCEEEECCCTTSHHHHHHHHHHHHHHHHTTCCCCGGGBC
T ss_pred --CC------CCCCEEEECHHHHHHHHHHHHHHCC--CCEEEEEeCCCccccHHHHHHHHHHHHHHCCCCCChhheE
Confidence 12 21112333322 2345566666653 4689999876432 23667888899876544333
No 67
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=82.95 E-value=1.1 Score=36.96 Aligned_cols=150 Identities=14% Similarity=0.142 Sum_probs=78.1
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHHHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~L 142 (241)
..+.+.++++|+++.....- .+......++..+ -..+|+|| .+...-...+. . .+++++.+|....
T Consensus 25 ~gi~~~a~~~g~~~~~~~~~--~~~~~~~~~~~l~--~~~vdgiI-~~~~~~~~~~~---~---~~iPvV~~~~~~~--- 90 (280)
T 3gyb_A 25 QSLSDVLTPKGYRLSVIDSL--TSQAGTDPITSAL--SMRPDGII-IAQDIPDFTVP---D---SLPPFVIAGTRIT--- 90 (280)
T ss_dssp HHHHHHHGGGTCEEEEECSS--SSCSSSCHHHHHH--TTCCSEEE-EESCC--------------CCCEEEESCCCS---
T ss_pred HHHHHHHHHCCCEEEEEeCC--CchHHHHHHHHHH--hCCCCEEE-ecCCCChhhHh---h---cCCCEEEECCCCC---
Confidence 34556677889988876654 1111123333333 36899999 44332222222 1 5688999986531
Q ss_pred HHhhhccCCCCceeecCCC-CCHHHHHHHhhhCCCCccEEEEEccCCC-----chhHHHHHHhCCCeeeEeeeeeeecCC
Q 026235 143 EEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVH 216 (241)
Q Consensus 143 ~~~~~~~~~Gi~~~~~p~~-~t~e~L~~~l~~~~~~~~~iL~~~g~~~-----~~~L~~~L~~~G~~V~~~~vY~~~~~~ 216 (241)
... ++.. +..+. ..+..+++.|.+.. .++|.++.+... ..-+.+.|++.|..+....++ .....
T Consensus 91 ~~~------~~~~-V~~D~~~~g~~a~~~L~~~G--~~~i~~i~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~-~~~~~ 160 (280)
T 3gyb_A 91 QAS------THDS-VANDDFRGAEIATKHLIDLG--HTHIAHLRVGSGAGLRRFESFEATMRAHGLEPLSNDYL-GPAVE 160 (280)
T ss_dssp SSC------STTE-EEECHHHHHHHHHHHHHHTT--CCSEEEECCSSHHHHHHHHHHHHHHHHTTCCCEECCCC-SCCCH
T ss_pred CCC------CCCE-EEechHHHHHHHHHHHHHCC--CCeEEEEeCCCchHHHHHHHHHHHHHHcCcCCCccccc-CCCCH
Confidence 112 3332 22332 23455666676653 468999988653 234667888999887644322 11111
Q ss_pred CChHHH-HHHc---CCCCEEEEEC
Q 026235 217 HVDQTV-LKQA---LSIPVVAVAS 236 (241)
Q Consensus 217 ~~~~~~-~~~l---~~id~IvFtS 236 (241)
....+. .+.+ ..+|+|+.++
T Consensus 161 ~~~~~~~~~~l~~~~~~~ai~~~~ 184 (280)
T 3gyb_A 161 HAGYTETLALLKEHPEVTAIFSSN 184 (280)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEESS
T ss_pred HHHHHHHHHHHhCCCCCCEEEECC
Confidence 111122 2222 4688887654
No 68
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=82.93 E-value=4.7 Score=33.31 Aligned_cols=154 Identities=8% Similarity=0.012 Sum_probs=73.4
Q ss_pred HHHHHHHHHCCCcEEEe-ceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHHH
Q 026235 63 GKLIKALAKHRIDCLEL-PLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~-P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~ 141 (241)
..+.+.++++|+++... ..-. .+......++..+ -..+|.||+.+...-....+.+.+ .+++++++|.....
T Consensus 28 ~gi~~~a~~~g~~~~~~~~~~~-~~~~~~~~~~~l~--~~~vdgiI~~~~~~~~~~~~~l~~---~~iPvV~~~~~~~~- 100 (290)
T 3clk_A 28 DGIQEEAHKNGYNLIIVYSGSA-DPEEQKHALLTAI--ERPVMGILLLSIALTDDNLQLLQS---SDVPYCFLSMGFDD- 100 (290)
T ss_dssp HHHHHHHHTTTCEEEEEC-----------CHHHHHH--SSCCSEEEEESCC----CHHHHHC---C--CEEEESCC--C-
T ss_pred HHHHHHHHHcCCeEEEEeCCCC-CHHHHHHHHHHHH--hcCCCEEEEecccCCHHHHHHHHh---CCCCEEEEcCCCCC-
Confidence 34456677889887654 3211 1101112233333 367999998765432233333432 46789999864211
Q ss_pred HHHhhhccCCCCceeecCCCC-CHHHHHHHhhhCCCCccEEEEEccCCCc-------hhHHHHHHhCCCeeeEeeeeeee
Q 026235 142 FEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTE 213 (241)
Q Consensus 142 L~~~~~~~~~Gi~~~~~p~~~-t~e~L~~~l~~~~~~~~~iL~~~g~~~~-------~~L~~~L~~~G~~V~~~~vY~~~ 213 (241)
.+. .+..+.. ....+++.|.+. ..++|.++.+.... .-+.+.|++.|+++....++...
T Consensus 101 ----------~~~-~V~~D~~~~g~~a~~~L~~~--G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~ 167 (290)
T 3clk_A 101 ----------DRP-FISSDDEDIGYQATNLLINE--GHRQIGIAGIDQYPYTGRKRLAGYKKALKEANIAINQEWIKPGD 167 (290)
T ss_dssp ----------CSC-EEECCHHHHHHHHHHHHHTT--TCCSEEEESCCCCTTTHHHHHHHHHHHHHHTTCCCCGGGEECCC
T ss_pred ----------CCC-EEEeChHHHHHHHHHHHHHc--CCCEEEEEeCCCCCcchHHHHHHHHHHHHHcCCCCCcceEEcCC
Confidence 111 1223322 234556666654 34689999876432 23667888889876543333221
Q ss_pred cCCCChHHH-HHHc--CCCCEEEEEC
Q 026235 214 PVHHVDQTV-LKQA--LSIPVVAVAS 236 (241)
Q Consensus 214 ~~~~~~~~~-~~~l--~~id~IvFtS 236 (241)
.......+. .+.+ ..+|+|+.++
T Consensus 168 ~~~~~~~~~~~~~l~~~~~~ai~~~~ 193 (290)
T 3clk_A 168 YSYTSGEQAMKAFGKNTDLTGIIAAS 193 (290)
T ss_dssp SSHHHHHHHHHHHCTTCCCSEEEESS
T ss_pred CChhhHHHHHHHHhccCCCcEEEECC
Confidence 111101122 2223 3688877654
No 69
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=82.75 E-value=2.9 Score=35.74 Aligned_cols=128 Identities=12% Similarity=-0.030 Sum_probs=70.1
Q ss_pred CCeEEEeCCCCCh-------HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHH
Q 026235 50 NPKVVVTRERGKN-------GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWK 122 (241)
Q Consensus 50 g~~VLitR~~~~~-------~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~ 122 (241)
.++|.+.-+...+ ..+.+.++++|+++.....-. + .......+.+. -..+|.||+.+. +.
T Consensus 64 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~--~-~~~~~~~~~l~-~~~vdGiIi~~~---------~~ 130 (333)
T 3jvd_A 64 SALVGVIVPDLSNEYYSESLQTIQQDLKAAGYQMLVAEANS--V-QAQDVVMESLI-SIQAAGIIHVPV---------VG 130 (333)
T ss_dssp CCEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEECCS--H-HHHHHHHHHHH-HHTCSEEEECCC---------TT
T ss_pred CCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEECCCC--h-HHHHHHHHHHH-hCCCCEEEEcch---------HH
Confidence 3456555554332 334556777898877653322 0 00111222221 257999999887 22
Q ss_pred hcCCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCC-CHHHHHHHhhhCCCCccEEEEEccCCCch-------hHH
Q 026235 123 EAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKASN-------EIE 194 (241)
Q Consensus 123 ~~~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~-t~e~L~~~l~~~~~~~~~iL~~~g~~~~~-------~L~ 194 (241)
.....+++++.+|.... .. ++.. +..+.+ ....+++.|.+. ..++|.++.|..... -+.
T Consensus 131 ~~~~~~iPvV~~~~~~~----~~------~~~~-V~~D~~~~~~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~Gf~ 197 (333)
T 3jvd_A 131 SIAPEGIPMVQLTRGEL----GP------GFPR-VLCDDEAGFFQLTESVLGG--SGMNIAALVGEESLSTTQERMRGIS 197 (333)
T ss_dssp CCC-CCSCEEEECC--------C------CSCE-EEECHHHHHHHHHHHHCCS--SSCEEEEEESCTTSHHHHHHHHHHH
T ss_pred HHhhCCCCEEEECccCC----CC------CCCE-EEEChHHHHHHHHHHHHHC--CCCeEEEEeCCCCCccHHHHHHHHH
Confidence 22235789999997542 23 4433 333322 345556666655 347999998875432 356
Q ss_pred HHHHhCCCe
Q 026235 195 EGLSNRGFE 203 (241)
Q Consensus 195 ~~L~~~G~~ 203 (241)
+.|++.|..
T Consensus 198 ~al~~~g~~ 206 (333)
T 3jvd_A 198 HAASIYGAE 206 (333)
T ss_dssp HHHHHTTCE
T ss_pred HHHHHCCCC
Confidence 778888877
No 70
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=82.72 E-value=5.4 Score=32.14 Aligned_cols=90 Identities=17% Similarity=0.186 Sum_probs=58.8
Q ss_pred CCeEEEeCCCCC-----hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCH-----HHHHHHHH
Q 026235 50 NPKVVVTRERGK-----NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP-----EAGSVFLE 119 (241)
Q Consensus 50 g~~VLitR~~~~-----~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~-----~aV~~f~~ 119 (241)
+.+|++..+... ..-+...|+.+|++|..+..- . ..+.+.+.+.. .++|.|.+++. ..++.+.+
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~--v---p~~~l~~~~~~-~~~d~v~lS~~~~~~~~~~~~~i~ 161 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVD--I---EPGKFVEAVKK-YQPDIVGMSALLTTTMMNMKSTID 161 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSS--B---CHHHHHHHHHH-HCCSEEEEECCSGGGTHHHHHHHH
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCC--C---CHHHHHHHHHH-cCCCEEEEeccccccHHHHHHHHH
Confidence 456777655532 455677889999999987641 1 23444444533 47899998874 33566666
Q ss_pred HHHhcCC-CCcEEEEeCHHHHHHH-HHh
Q 026235 120 AWKEAGT-PNVRIGVVGAGTASIF-EEV 145 (241)
Q Consensus 120 ~l~~~~~-~~~~i~aIG~~Ta~~L-~~~ 145 (241)
.+++.+. +++++++-|....+.+ ++.
T Consensus 162 ~l~~~~~~~~~~v~vGG~~~~~~~~~~~ 189 (210)
T 1y80_A 162 ALIAAGLRDRVKVIVGGAPLSQDFADEI 189 (210)
T ss_dssp HHHHTTCGGGCEEEEESTTCCHHHHHHH
T ss_pred HHHhcCCCCCCeEEEECCCCCHHHHHHc
Confidence 6766655 4799999998766555 444
No 71
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=82.31 E-value=18 Score=35.46 Aligned_cols=111 Identities=14% Similarity=0.170 Sum_probs=73.1
Q ss_pred CCeEEEeCCCCC-----hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeC-----HHHHHHHHH
Q 026235 50 NPKVVVTRERGK-----NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS-----PEAGSVFLE 119 (241)
Q Consensus 50 g~~VLitR~~~~-----~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS-----~~aV~~f~~ 119 (241)
..+|++...... ..-....|+..|++|+..+... ..+++.+...+ .+.|.|..+| ...+..+.+
T Consensus 604 r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v-----~~eeiv~aA~e-~~adiVglSsl~~~~~~~~~~vi~ 677 (762)
T 2xij_A 604 RPRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQ-----TPREVAQQAVD-ADVHAVGVSTLAAGHKTLVPELIK 677 (762)
T ss_dssp CCEEEEECCSSCCCCHHHHHHHHHHHHTTCEEEECCTTC-----CHHHHHHHHHH-TTCSEEEEEECSSCHHHHHHHHHH
T ss_pred CCEEEEEecCcchhhHHHHHHHHHHHhCCeEEeeCCCCC-----CHHHHHHHHHH-cCCCEEEEeeecHHHHHHHHHHHH
Confidence 456777655432 3456668899999999865532 12333333322 6789999887 335666777
Q ss_pred HHHhcCCCCcEEEEeC--HHH-HHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhh
Q 026235 120 AWKEAGTPNVRIGVVG--AGT-ASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (241)
Q Consensus 120 ~l~~~~~~~~~i~aIG--~~T-a~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~ 173 (241)
.+++.+.+++++++=| |.. .+.+++. |+...+.| ..+....++.+.+
T Consensus 678 ~Lr~~G~~dv~VivGG~~P~~d~~~l~~~------GaD~~f~p-gtd~~e~~~~i~~ 727 (762)
T 2xij_A 678 ELNSLGRPDILVMCGGVIPPQDYEFLFEV------GVSNVFGP-GTRIPKAAVQVLD 727 (762)
T ss_dssp HHHHTTCTTSEEEEEESCCGGGHHHHHHH------TCCEEECT-TCCHHHHHHHHHH
T ss_pred HHHhcCCCCCEEEEeCCCCcccHHHHHhC------CCCEEeCC-CCCHHHHHHHHHH
Confidence 7888788778877765 443 6778998 99875554 4477666666654
No 72
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=82.19 E-value=11 Score=31.55 Aligned_cols=110 Identities=14% Similarity=0.125 Sum_probs=66.0
Q ss_pred CCCeEEEeCCCCC-----hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCH-----HHHHHHH
Q 026235 49 SNPKVVVTRERGK-----NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP-----EAGSVFL 118 (241)
Q Consensus 49 ~g~~VLitR~~~~-----~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~-----~aV~~f~ 118 (241)
.+.+|++..+... ..-+...|+.+|++|+.+..- .| .+.+.+.... .++|.|.+++. ..++.+.
T Consensus 122 ~~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~--vp---~e~l~~~~~~-~~~d~V~lS~l~~~~~~~~~~~i 195 (258)
T 2i2x_B 122 TKGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRD--VP---AEEVLAAVQK-EKPIMLTGTALMTTTMYAFKEVN 195 (258)
T ss_dssp CSCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEE--CC---SHHHHHHHHH-HCCSEEEEECCCTTTTTHHHHHH
T ss_pred CCCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCC--CC---HHHHHHHHHH-cCCCEEEEEeeccCCHHHHHHHH
Confidence 3567887766532 445677889999999987663 22 2344444422 57899988773 3355566
Q ss_pred HHHHhcCCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHh
Q 026235 119 EAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASEL 171 (241)
Q Consensus 119 ~~l~~~~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l 171 (241)
+.+++.+.+ +++++-|....+.+.+.+ |... +.++...+-.+++.+
T Consensus 196 ~~l~~~~~~-~~v~vGG~~~~~~~~~~i-----gad~-~~~da~~av~~~~~l 241 (258)
T 2i2x_B 196 DMLLENGIK-IPFACGGGAVNQDFVSQF-----ALGV-YGEEAADAPKIADAI 241 (258)
T ss_dssp HHHHTTTCC-CCEEEESTTCCHHHHHTS-----TTEE-ECSSTTHHHHHHHHH
T ss_pred HHHHhcCCC-CcEEEECccCCHHHHHHc-----CCeE-EECCHHHHHHHHHHH
Confidence 666665544 899999976555544332 7532 444333333444333
No 73
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=82.12 E-value=4.7 Score=34.42 Aligned_cols=131 Identities=13% Similarity=0.092 Sum_probs=65.5
Q ss_pred HHHHHHHHCCCcEEEeceEEEeeCCCch----HHHHHHhcCCCccEEEEeCH-HHHHHHHHHHHhcCCCCcEEEEeCHHH
Q 026235 64 KLIKALAKHRIDCLELPLIQHAQGPDTD----RLSSVLNADTIFDWIIITSP-EAGSVFLEAWKEAGTPNVRIGVVGAGT 138 (241)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~----~l~~~l~~l~~~d~IiFTS~-~aV~~f~~~l~~~~~~~~~i~aIG~~T 138 (241)
.+.+.++++|+++..... ..+.+ .+...+..-..+|+||+... .......+.+.+ .++++++++...
T Consensus 25 g~~~~a~~~g~~~~~~~~-----~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~~~~~~~~~~~~---~giPvV~~~~~~ 96 (350)
T 3h75_A 25 FMQAAARDLGLDLRILYA-----ERDPQNTLQQARELFQGRDKPDYLMLVNEQYVAPQILRLSQG---SGIKLFIVNSPL 96 (350)
T ss_dssp HHHHHHHHHTCEEEEEEC-----TTCHHHHHHHHHHHHHSSSCCSEEEEECCSSHHHHHHHHHTT---SCCEEEEEESCC
T ss_pred HHHHHHHHcCCeEEEEEC-----CCCHHHHHHHHHHHHhcCCCCCEEEEeCchhhHHHHHHHHHh---CCCcEEEEcCCC
Confidence 355567788988875521 12222 23334421148999999862 344444444433 468899987643
Q ss_pred HHHHHH-hhhc-cCCC-CceeecCCCC-CHHHHHHHhhhCC----CCc-cEEEEEccCCCc-------hhHHHHHHhCCC
Q 026235 139 ASIFEE-VIQS-SKCS-LDVAFSPSKA-TGKILASELPKNG----KKK-CTVLYPASAKAS-------NEIEEGLSNRGF 202 (241)
Q Consensus 139 a~~L~~-~~~~-~~~G-i~~~~~p~~~-t~e~L~~~l~~~~----~~~-~~iL~~~g~~~~-------~~L~~~L~~~G~ 202 (241)
...-+. ..+. ..+. ....+..+.+ ....+++.|.+.. ... ++++++.|.... .-+.+.|++.|.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~g~~~~~g~~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~ 176 (350)
T 3h75_A 97 TLDQRELIGQSRQNYSDWIGSMVGDDEEAGYRMLKELLHKLGPVPAGHGIELLAFSGLKVTPAAQLRERGLRRALAEHPQ 176 (350)
T ss_dssp CTTTC------------CEEEEECCHHHHHHHHHHHHHHHHCCCCSSCCEEEEEEESCTTSHHHHHHHHHHHHHHHHCTT
T ss_pred ChHHHhhhcCCchhccceeeeecCChHHHHHHHHHHHHHHhhhhcCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHCCC
Confidence 221100 0000 0000 0112223322 2344555555443 112 589999887543 246778888886
No 74
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=82.09 E-value=12 Score=26.82 Aligned_cols=111 Identities=14% Similarity=0.169 Sum_probs=66.6
Q ss_pred CCeEEEeCCCC-ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeC----HHHHHHHHHHHHhc
Q 026235 50 NPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVFLEAWKEA 124 (241)
Q Consensus 50 g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS----~~aV~~f~~~l~~~ 124 (241)
.++||+.-... ....+...|++.|+++... .+..+..+.+.. ..+|.|+.-- .++.+. ...+.+.
T Consensus 6 ~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~--------~~~~~a~~~l~~-~~~dlvi~d~~l~~~~g~~~-~~~l~~~ 75 (140)
T 3grc_A 6 RPRILICEDDPDIARLLNLMLEKGGFDSDMV--------HSAAQALEQVAR-RPYAAMTVDLNLPDQDGVSL-IRALRRD 75 (140)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------CSHHHHHHHHHH-SCCSEEEECSCCSSSCHHHH-HHHHHTS
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHCCCeEEEE--------CCHHHHHHHHHh-CCCCEEEEeCCCCCCCHHHH-HHHHHhC
Confidence 57899987764 3566888899999775432 233444444533 5789888742 345443 3344442
Q ss_pred -CCCCcEEEEeCHHHHH-HHH-HhhhccCCCCceeecCCCCCHHHHHHHhhhC
Q 026235 125 -GTPNVRIGVVGAGTAS-IFE-EVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (241)
Q Consensus 125 -~~~~~~i~aIG~~Ta~-~L~-~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~ 174 (241)
..++++++.+...... ... +.+ ..|.. ++..+..+.+.|.+.|...
T Consensus 76 ~~~~~~~ii~~s~~~~~~~~~~~~~---~~g~~-~~l~kP~~~~~l~~~i~~~ 124 (140)
T 3grc_A 76 SRTRDLAIVVVSANAREGELEFNSQ---PLAVS-TWLEKPIDENLLILSLHRA 124 (140)
T ss_dssp GGGTTCEEEEECTTHHHHHHHHCCT---TTCCC-EEECSSCCHHHHHHHHHHH
T ss_pred cccCCCCEEEEecCCChHHHHHHhh---hcCCC-EEEeCCCCHHHHHHHHHHH
Confidence 2356788777655433 222 221 11654 4677788999999888653
No 75
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=81.70 E-value=7.1 Score=26.59 Aligned_cols=109 Identities=11% Similarity=0.057 Sum_probs=63.8
Q ss_pred CCeEEEeCCCC-ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeC----HHHHHHHHHHHHhc
Q 026235 50 NPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVFLEAWKEA 124 (241)
Q Consensus 50 g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS----~~aV~~f~~~l~~~ 124 (241)
+++||+.-... ....+...|+..|+++... .+..+....+.. ..+|.|++-- .++.+ +...+.+.
T Consensus 1 ~~~iliv~~~~~~~~~l~~~l~~~g~~v~~~--------~~~~~~~~~l~~-~~~dlii~d~~~~~~~~~~-~~~~l~~~ 70 (119)
T 2j48_A 1 AGHILLLEEEDEAATVVCEMLTAAGFKVIWL--------VDGSTALDQLDL-LQPIVILMAWPPPDQSCLL-LLQHLREH 70 (119)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHHTTCEEEEE--------SCHHHHHHHHHH-HCCSEEEEECSTTCCTHHH-HHHHHHHT
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCcEEEEe--------cCHHHHHHHHHh-cCCCEEEEecCCCCCCHHH-HHHHHHhc
Confidence 46788876654 3567888899889765432 233333344432 4688888752 23443 44445544
Q ss_pred C-CCCcEEEEeCHHHH-HHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCC
Q 026235 125 G-TPNVRIGVVGAGTA-SIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG 175 (241)
Q Consensus 125 ~-~~~~~i~aIG~~Ta-~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~ 175 (241)
. .++++++.++.... ..+.+. |.. ++..+..+.+.|.+.+....
T Consensus 71 ~~~~~~~ii~~~~~~~~~~~~~~------g~~-~~l~kp~~~~~l~~~l~~~~ 116 (119)
T 2j48_A 71 QADPHPPLVLFLGEPPVDPLLTA------QAS-AILSKPLDPQLLLTTLQGLC 116 (119)
T ss_dssp CCCSSCCCEEEESSCCSSHHHHH------HCS-EECSSCSTTHHHHHHHHTTC
T ss_pred cccCCCCEEEEeCCCCchhhhhc------CHH-HhccCCCCHHHHHHHHHHHh
Confidence 3 24566665543221 144455 765 46777788888988886553
No 76
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A
Probab=81.70 E-value=12 Score=32.99 Aligned_cols=154 Identities=10% Similarity=-0.000 Sum_probs=88.1
Q ss_pred HHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHH--H-HHHHHHHHhcCCCCcEEEE---eCHH
Q 026235 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA--G-SVFLEAWKEAGTPNVRIGV---VGAG 137 (241)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~a--V-~~f~~~l~~~~~~~~~i~a---IG~~ 137 (241)
.+.+.|+++|+++...+--.. +.+++.+ .+.++|.++.++-.. + +.+++.+ +++++++ +|--
T Consensus 31 ~~~~~L~~~g~ev~~~~~~~~----~~~~~~~---~~~~ad~li~~~~~~~~~~~~~l~~~-----p~Lk~i~~~g~G~d 98 (351)
T 3jtm_A 31 GIRDWLESQGHQYIVTDDKEG----PDCELEK---HIPDLHVLISTPFHPAYVTAERIKKA-----KNLKLLLTAGIGSD 98 (351)
T ss_dssp GCHHHHHHTTCEEEEESCCSS----TTSHHHH---HTTTCSEEEECTTSCCCBCHHHHHHC-----SSCCEEEESSSCCT
T ss_pred HHHHHHHHCCCEEEEeCCCCC----CHHHHHH---HhCCCEEEEEccCCCCCCCHHHHhhC-----CCCeEEEEeCeeec
Confidence 578899999999886543221 2223333 458899988654211 1 1223322 3455554 3432
Q ss_pred H--HHHHHHhhhccCCCCceeecCCCCCHHHHHHHhh-------h-----------------------CCCCccEEEEEc
Q 026235 138 T--ASIFEEVIQSSKCSLDVAFSPSKATGKILASELP-------K-----------------------NGKKKCTVLYPA 185 (241)
Q Consensus 138 T--a~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~-------~-----------------------~~~~~~~iL~~~ 185 (241)
. .+++++. |+.+.-.|. .+++.++|... + ....|+++.++.
T Consensus 99 ~id~~~a~~~------gI~V~n~~g-~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktvGIIG 171 (351)
T 3jtm_A 99 HIDLQAAAAA------GLTVAEVTG-SNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVG 171 (351)
T ss_dssp TBCHHHHHHT------TCEEEECTT-TTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCHHHHHTTCCCSTTCEEEEEC
T ss_pred ccCHHHHHhc------CeeEEECCC-cCchHHHHHHHHHHHHHhhCcHHHHHHHHcCCCccccccCCcccccCCEEeEEE
Confidence 2 3577888 998866664 45555554321 0 113467888886
Q ss_pred cCCCchhHHHHHHhCCCeeeEeeeeeeecCCCC---------hHHHHHHcCCCCEEEEECCcc
Q 026235 186 SAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHV---------DQTVLKQALSIPVVAVASPSA 239 (241)
Q Consensus 186 g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~---------~~~~~~~l~~id~IvFtSps~ 239 (241)
-..-...+...|+..|++| ..|.+.+.... ...+.+.+.+.|+|++.-|.+
T Consensus 172 ~G~IG~~vA~~l~~~G~~V---~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~Plt 231 (351)
T 3jtm_A 172 AGRIGKLLLQRLKPFGCNL---LYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLT 231 (351)
T ss_dssp CSHHHHHHHHHHGGGCCEE---EEECSSCCCHHHHHHHCCEECSCHHHHGGGCSEEEECSCCC
T ss_pred eCHHHHHHHHHHHHCCCEE---EEeCCCccCHHHHHhCCCeEcCCHHHHHhcCCEEEECCCCC
Confidence 5555567889999888764 45554321110 011223346899999988753
No 77
>3aek_A Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_A* 3aes_A* 3aer_A* 3aet_A 3aeu_A
Probab=81.67 E-value=0.59 Score=42.63 Aligned_cols=146 Identities=11% Similarity=0.095 Sum_probs=85.9
Q ss_pred CeEEEeCCCCCh--HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCCCC
Q 026235 51 PKVVVTRERGKN--GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPN 128 (241)
Q Consensus 51 ~~VLitR~~~~~--~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~ 128 (241)
.+|-|..+-... .++.+.|++.|+++..++... ..+ .+..++..+.-+..++.. ....+.+++.+.+-
T Consensus 184 ~~VNilG~~~~~~~~eik~lL~~~Gi~v~~~~~~~-----~~~----ei~~~~~A~~niv~~~~~-~~~A~~Le~~GiP~ 253 (437)
T 3aek_A 184 AELIVVGALPDVVEDQCLSLLTQLGVGPVRMLPAR-----RSD----IEPAVGPNTRFILAQPFL-GETTGALERRGAKR 253 (437)
T ss_dssp CCEEEESCCCHHHHHHHHHHHHHTTCCCEEEESCS-----SGG----GCCCBCTTCEEEESSTTC-HHHHHHHHHTTCEE
T ss_pred CcEEEEeCCChhHHHHHHHHHHHcCCceEEEcCCC-----CHH----HHHhhhcCcEEEEECccH-HHHHHHHHHcCCCe
Confidence 345554444333 589999999999999766432 112 234567778887777766 55555554555443
Q ss_pred cEE-EEeC-HHHHHHHHHhhhccCCCCceeecCCC---CCHHHHHHHhhhC--CCCccEEEEEccCCCchhHHHHH-HhC
Q 026235 129 VRI-GVVG-AGTASIFEEVIQSSKCSLDVAFSPSK---ATGKILASELPKN--GKKKCTVLYPASAKASNEIEEGL-SNR 200 (241)
Q Consensus 129 ~~i-~aIG-~~Ta~~L~~~~~~~~~Gi~~~~~p~~---~t~e~L~~~l~~~--~~~~~~iL~~~g~~~~~~L~~~L-~~~ 200 (241)
+.. .-+| ..|.+.|++. ..++|..... .+. ..-+.+.+.+... ...|+++++..+..-.--|...| .+.
T Consensus 254 i~~~~P~G~~~T~~~l~~l--a~~~g~~~~~-~e~~i~~e~~~~~~~l~~~~~~l~Gkrv~i~g~~~~~~~l~~~L~~el 330 (437)
T 3aek_A 254 IAAPFPFGEEGTTLWLKAV--ADAYGVSAEK-FEAVTAAPRARAKKAIAAHLETLTGKSLFMFPDSQLEIPLARFLAREC 330 (437)
T ss_dssp CCCCCSCHHHHHHHHHHHH--HHHTTCCHHH-HHHHHHHHHHHHHHHHHTTHHHHTTCEEEECSSSSCHHHHHHHHHHTT
T ss_pred EecCCCcCHHHHHHHHHHH--HHHHCCChhh-HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCchHHHHHHHHHHHHc
Confidence 333 2366 6788888876 2223543210 000 0011233333322 12478998886654445689999 999
Q ss_pred CCeeeEeee
Q 026235 201 GFEVVRLNT 209 (241)
Q Consensus 201 G~~V~~~~v 209 (241)
|.++..+.+
T Consensus 331 G~~vv~~~~ 339 (437)
T 3aek_A 331 GMKTTEIAT 339 (437)
T ss_dssp CCEEEEEEE
T ss_pred CCEEEEEEe
Confidence 999988766
No 78
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=81.57 E-value=13 Score=26.88 Aligned_cols=109 Identities=11% Similarity=0.110 Sum_probs=65.0
Q ss_pred CCCCeEEEeCCCC-ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEe----CHHHHHHHHHHHH
Q 026235 48 NSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAWK 122 (241)
Q Consensus 48 l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFT----S~~aV~~f~~~l~ 122 (241)
..+++||+.-... ....+...|++.|+++... .+..+....+.. ..+|.|++- ..++.+ ++..+.
T Consensus 6 ~~~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~l~~-~~~dlii~d~~l~~~~g~~-~~~~l~ 75 (147)
T 2zay_A 6 GKWWRIMLVDTQLPALAASISALSQEGFDIIQC--------GNAIEAVPVAVK-THPHLIITEANMPKISGMD-LFNSLK 75 (147)
T ss_dssp --CEEEEEECTTGGGGHHHHHHHHHHTEEEEEE--------SSHHHHHHHHHH-HCCSEEEEESCCSSSCHHH-HHHHHH
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHcCCeEEEe--------CCHHHHHHHHHc-CCCCEEEEcCCCCCCCHHH-HHHHHH
Confidence 3467888887764 4677888999888755422 233333444433 468988874 234544 344454
Q ss_pred hc-CCCCcEEEEeCH----HHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhh
Q 026235 123 EA-GTPNVRIGVVGA----GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (241)
Q Consensus 123 ~~-~~~~~~i~aIG~----~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~ 173 (241)
+. ...+++++++.. .....+.+. |.. ++..+..+.+.|.+.|..
T Consensus 76 ~~~~~~~~pii~ls~~~~~~~~~~~~~~------g~~-~~l~kp~~~~~L~~~i~~ 124 (147)
T 2zay_A 76 KNPQTASIPVIALSGRATAKEEAQLLDM------GFI-DFIAKPVNAIRLSARIKR 124 (147)
T ss_dssp TSTTTTTSCEEEEESSCCHHHHHHHHHH------TCS-EEEESSCCHHHHHHHHHH
T ss_pred cCcccCCCCEEEEeCCCCHHHHHHHHhC------CCC-EEEeCCCCHHHHHHHHHH
Confidence 42 235667666543 233334456 876 467778899999888754
No 79
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=81.42 E-value=1.7 Score=35.55 Aligned_cols=127 Identities=15% Similarity=0.140 Sum_probs=64.0
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHHHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~L 142 (241)
..+.+.++++|+++.....-. .+....+.++..+ -..+|.||+.+...-....+ .....+++++++|....
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~l~--~~~vdgiI~~~~~~~~~~~~---~~~~~~iPvV~~~~~~~--- 89 (276)
T 2h0a_A 19 EGIEGVLLEQRYDLALFPILS-LARLKRYLENTTL--AYLTDGLILASYDLTERFEE---GRLPTERPVVLVDAQNP--- 89 (276)
T ss_dssp HHHHHHHGGGTCEEEECCCCS-CCCCC-----------CCCSEEEEESCCCC---------CCSCSSCEEEESSCCT---
T ss_pred HHHHHHHHHCCCEEEEEeCCC-chhhHHHHHHHHH--hCCCCEEEEecCCCCHHHHH---HHhhcCCCEEEEeccCC---
Confidence 344566778898876543211 0000111222222 26799999976543222222 22224688999986431
Q ss_pred HHhhhccCCCCceeecCCCC-CHHHHHHHhhhCCCCccEEEEEccCC-C---c--------hhHHHHHHhCCCeeeEeee
Q 026235 143 EEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAK-A---S--------NEIEEGLSNRGFEVVRLNT 209 (241)
Q Consensus 143 ~~~~~~~~~Gi~~~~~p~~~-t~e~L~~~l~~~~~~~~~iL~~~g~~-~---~--------~~L~~~L~~~G~~V~~~~v 209 (241)
++. .+..+.. ....+++.|.+. ..++|.++.+.. . . .-+.+.|++.|.++....+
T Consensus 90 ---------~~~-~V~~d~~~~~~~a~~~L~~~--G~~~i~~i~~~~~~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~ 157 (276)
T 2h0a_A 90 ---------RYD-SVYLDNRLGGRLAGAYLARF--PGPIFAIAVEEEPDRAFRRTVFAERMAGFQEALKEAGRPFSPDRL 157 (276)
T ss_dssp ---------TSE-EEEECSHHHHHHHHHHHTTS--SSCEEEEEECCSCCC---CCHHHHHHHHHHHHHHHTTCCCCGGGE
T ss_pred ---------CCC-EEEEccHHHHHHHHHHHHHc--CCCeEEEEecCcccccccchhHHHHHHHHHHHHHHcCCCCChHHe
Confidence 211 1223332 345566777665 346999998865 3 1 1255778889987654333
Q ss_pred e
Q 026235 210 Y 210 (241)
Q Consensus 210 Y 210 (241)
+
T Consensus 158 ~ 158 (276)
T 2h0a_A 158 Y 158 (276)
T ss_dssp E
T ss_pred e
Confidence 3
No 80
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=80.60 E-value=12 Score=26.20 Aligned_cols=110 Identities=10% Similarity=0.088 Sum_probs=63.5
Q ss_pred CCCCeEEEeCCCC-ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeC-----HHHHHHHHHHH
Q 026235 48 NSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS-----PEAGSVFLEAW 121 (241)
Q Consensus 48 l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS-----~~aV~~f~~~l 121 (241)
+.+.+||+.-... ....+...|+..|+++... .+..+..+.+.....+|.|+.-- .++.+. ...+
T Consensus 3 m~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~l~~~~~~dlvi~d~~l~~~~~g~~~-~~~l 73 (132)
T 2rdm_A 3 LEAVTILLADDEAILLLDFESTLTDAGFLVTAV--------SSGAKAIEMLKSGAAIDGVVTDIRFCQPPDGWQV-ARVA 73 (132)
T ss_dssp CSSCEEEEECSSHHHHHHHHHHHHHTTCEEEEE--------SSHHHHHHHHHTTCCCCEEEEESCCSSSSCHHHH-HHHH
T ss_pred CCCceEEEEcCcHHHHHHHHHHHHHcCCEEEEE--------CCHHHHHHHHHcCCCCCEEEEeeeCCCCCCHHHH-HHHH
Confidence 4567899987764 3566888888888865532 23344444553323789888641 345543 4444
Q ss_pred HhcCCCCcEEEEeCHH-HHHHHHHhhhccCCCCce-eecCCCCCHHHHHHHhhhC
Q 026235 122 KEAGTPNVRIGVVGAG-TASIFEEVIQSSKCSLDV-AFSPSKATGKILASELPKN 174 (241)
Q Consensus 122 ~~~~~~~~~i~aIG~~-Ta~~L~~~~~~~~~Gi~~-~~~p~~~t~e~L~~~l~~~ 174 (241)
.+.. ++++++.+... ..+...+. +.. ++..+..+.+.|.+.+.+.
T Consensus 74 ~~~~-~~~~ii~~s~~~~~~~~~~~-------~~~~~~l~kP~~~~~l~~~i~~~ 120 (132)
T 2rdm_A 74 REID-PNMPIVYISGHAALEWASNG-------VPDSIILEKPFTSAQLITAVSQL 120 (132)
T ss_dssp HHHC-TTCCEEEEESSCCTTHHHHS-------CTTCEEEESSCCHHHHHHHHHHH
T ss_pred HhcC-CCCCEEEEeCCccHHHHHhh-------cCCcceEeCCCCHHHHHHHHHHH
Confidence 4432 45666665433 22332222 211 4666778899998888653
No 81
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=80.57 E-value=6.8 Score=28.17 Aligned_cols=109 Identities=8% Similarity=0.040 Sum_probs=64.8
Q ss_pred CCCCeEEEeCCCC-ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEe----CHHHHHHHHHHHH
Q 026235 48 NSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAWK 122 (241)
Q Consensus 48 l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFT----S~~aV~~f~~~l~ 122 (241)
..+++||+.-... ....+...|+..|+++... .+..+..+.+. -..+|.|++- ..++.+ +...+.
T Consensus 5 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~l~-~~~~dlii~d~~l~~~~g~~-~~~~l~ 74 (142)
T 3cg4_A 5 EHKGDVMIVDDDAHVRIAVKTILSDAGFHIISA--------DSGGQCIDLLK-KGFSGVVLLDIMMPGMDGWD-TIRAIL 74 (142)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------SSHHHHHHHHH-TCCCEEEEEESCCSSSCHHH-HHHHHH
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHHCCeEEEEe--------CCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHH-HHHHHH
Confidence 4567899887764 3567888899988764422 23344444553 3568888874 224544 344454
Q ss_pred hc-CCCCcEEEEeCHHHH----HHHHHhhhccCCCCceeecCCCCCHHHHHHHhhh
Q 026235 123 EA-GTPNVRIGVVGAGTA----SIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (241)
Q Consensus 123 ~~-~~~~~~i~aIG~~Ta----~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~ 173 (241)
+. ...+++++.+..... ..+.+. |.. ++..+..+.+.|.+.|..
T Consensus 75 ~~~~~~~~pii~~s~~~~~~~~~~~~~~------g~~-~~l~kp~~~~~l~~~i~~ 123 (142)
T 3cg4_A 75 DNSLEQGIAIVMLTAKNAPDAKMIGLQE------YVV-DYITKPFDNEDLIEKTTF 123 (142)
T ss_dssp HTTCCTTEEEEEEECTTCCCCSSTTGGG------GEE-EEEESSCCHHHHHHHHHH
T ss_pred hhcccCCCCEEEEECCCCHHHHHHHHhc------Ccc-EEEeCCCCHHHHHHHHHH
Confidence 42 235677777654321 222334 654 466777888988887754
No 82
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=80.46 E-value=3.6 Score=33.93 Aligned_cols=142 Identities=9% Similarity=0.030 Sum_probs=76.4
Q ss_pred HHHHHHHHHCCCc-EEEeceEEEeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHH-H
Q 026235 63 GKLIKALAKHRID-CLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAG-T 138 (241)
Q Consensus 63 ~~l~~~L~~~G~~-v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~-T 138 (241)
..+.+.++++|++ +...+.- .+.+...+.++. -..+|+||+.+ ..+......+++++.+|.. .
T Consensus 30 ~gi~~~a~~~g~~~~~~~~~~-----~~~~~~~~~~~~l~~~~vdgiIi~~--------~~~~~~~~~~iPvV~~~~~~~ 96 (277)
T 3hs3_A 30 DGIQEVIQKEGYTALISFSTN-----SDVKKYQNAIINFENNNVDGIITSA--------FTIPPNFHLNTPLVMYDSANI 96 (277)
T ss_dssp HHHHHHHHHTTCEEEEEECSS-----CCHHHHHHHHHHHHHTTCSEEEEEC--------CCCCTTCCCSSCEEEESCCCC
T ss_pred HHHHHHHHHCCCCEEEEEeCC-----CChHHHHHHHHHHHhCCCCEEEEcc--------hHHHHHHhCCCCEEEEccccc
Confidence 3455677888998 5543221 122211122211 26899999998 1122222347899999864 2
Q ss_pred HHHHHHhhhccCCCCceeecCCCC-CHHHHHHHhhhCCCCccEEEEEccCCCc-------hhHHHHHHhCCCeeeEeeee
Q 026235 139 ASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTY 210 (241)
Q Consensus 139 a~~L~~~~~~~~~Gi~~~~~p~~~-t~e~L~~~l~~~~~~~~~iL~~~g~~~~-------~~L~~~L~~~G~~V~~~~vY 210 (241)
. .. ++ .+..+.+ .+...++.|. . ..++|.++.|.... .-+.+.|++.|.++... ++
T Consensus 97 ~----~~------~~--~V~~D~~~~g~~a~~~L~-~--G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~-~~ 160 (277)
T 3hs3_A 97 N----DD------IV--RIVSNNTKGGKESIKLLS-K--KIEKVLIQHWPLSLPTIRERIEAMTAEASKLKIDYLLE-ET 160 (277)
T ss_dssp C----SS------SE--EEEECHHHHHHHHHHTSC-T--TCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEE-EC
T ss_pred C----CC------CE--EEEEChHHHHHHHHHHHH-h--CCCEEEEEeCCCcCccHHHHHHHHHHHHHHCCCCCCCC-Cc
Confidence 1 12 33 2333322 2344555565 3 34699999887543 24667889999888765 44
Q ss_pred eeecCCCChHHHHHHc---CCCCEEEEEC
Q 026235 211 TTEPVHHVDQTVLKQA---LSIPVVAVAS 236 (241)
Q Consensus 211 ~~~~~~~~~~~~~~~l---~~id~IvFtS 236 (241)
..... ...+.+.+ ..+|+|+-++
T Consensus 161 ~~~~~---~~~~~~~l~~~~~~~ai~~~~ 186 (277)
T 3hs3_A 161 PENNP---YISAQSALNKSNQFDAIITVN 186 (277)
T ss_dssp CSSCH---HHHHHHHHHTGGGCSEEECSS
T ss_pred cCCch---HHHHHHHHcCCCCCCEEEECC
Confidence 32221 22222222 4688876543
No 83
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=80.34 E-value=2.5 Score=34.15 Aligned_cols=57 Identities=18% Similarity=0.150 Sum_probs=40.0
Q ss_pred ccEEEEEccCCC------c------hhHHHHHHhCCCeeeEeeeeeeecCCCChHHHHHHcCCCCEEEEECCc
Q 026235 178 KCTVLYPASAKA------S------NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPS 238 (241)
Q Consensus 178 ~~~iL~~~g~~~------~------~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~l~~id~IvFtSps 238 (241)
..++|++-|.-. + +.+.+.|++.|.+|..+.+|+. ....+..+.+...|.|||.+|.
T Consensus 12 ~~~iLii~gsP~~~~s~~s~~~~l~~~~~~~~~~~g~~v~~~dL~~~----~d~~~~~~~l~~AD~iV~~~P~ 80 (204)
T 2amj_A 12 SSNILIINGAKKFAHSNGQLNDTLTEVADGTLRDLGHDVRIVRADSD----YDVKAEVQNFLWADVVIWQMPG 80 (204)
T ss_dssp CCEEEEEECCC------CHHHHHHHHHHHHHHHHTTCEEEEEESSSC----CCHHHHHHHHHHCSEEEEEEEC
T ss_pred CcCEEEEEcCCCcccCcCcHHHHHHHHHHHHHHHcCCEEEEEeCCcc----ccHHHHHHHHHhCCEEEEECCc
Confidence 358888877544 1 2456677777999999999862 2244555566789999999984
No 84
>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}
Probab=80.32 E-value=4.9 Score=34.74 Aligned_cols=165 Identities=14% Similarity=0.047 Sum_probs=88.3
Q ss_pred CeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHH-HHHHHHHHhcCCCCc
Q 026235 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG-SVFLEAWKEAGTPNV 129 (241)
Q Consensus 51 ~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV-~~f~~~l~~~~~~~~ 129 (241)
++|+++.+-. +...+.|++.|+++...+.- ..+.+++.+. +.++|.++..+...+ +.+++.+ +++
T Consensus 1 ~~vl~~~~~~--~~~~~~l~~~g~~v~~~~~~----~~~~~~~~~~---~~~~d~~i~~~~~~~~~~~l~~~-----~~L 66 (311)
T 2cuk_A 1 MRVLVTRTLP--GKALDRLRERGLEVEVHRGL----FLPKAELLKR---VEGAVGLIPTVEDRIDAEVMDRA-----KGL 66 (311)
T ss_dssp CEEEESSCCS--SSTTHHHHHTTCEEEECCSS----CCCHHHHHHH---HTTCSEEECCTTSCBCHHHHHHS-----TTC
T ss_pred CEEEEeCCCC--HHHHHHHHhcCCeEEEecCC----CCCHHHHHHH---hcCCeEEEEcCCCCCCHHHHhhC-----CCC
Confidence 4678876543 22346678887776543211 1123444443 467899886543111 1223332 334
Q ss_pred EEEE---eCH--HHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhh-------------------------------
Q 026235 130 RIGV---VGA--GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK------------------------------- 173 (241)
Q Consensus 130 ~i~a---IG~--~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~------------------------------- 173 (241)
++++ +|- --.+++.+. |+.+.-.| ...++.++|....
T Consensus 67 k~i~~~~~G~d~id~~~~~~~------gi~v~n~~-~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~ 139 (311)
T 2cuk_A 67 KVIACYSVGVDHVDLEAARER------GIRVTHTP-GVLTEATADLTLALLLAVARRVVEGAAYARDGLWKAWHPELLLG 139 (311)
T ss_dssp CEEECSSSCCTTBCHHHHHTT------TCEEECCC-STTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCB
T ss_pred eEEEECCcCccccCHHHHHhC------CcEEEECC-CCChHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCccccccccC
Confidence 5444 221 123567788 98876555 3555555543210
Q ss_pred CCCCccEEEEEccCCCchhHHHHHHhCCCeeeEeeeeeeecCCC--ChHHHHHHcCCCCEEEEECCcc
Q 026235 174 NGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHH--VDQTVLKQALSIPVVAVASPSA 239 (241)
Q Consensus 174 ~~~~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~--~~~~~~~~l~~id~IvFtSps~ 239 (241)
....++++.++-...-...+...|+..|.+| .+|.+.+... ....+.+.+.+.|+|++.-|.+
T Consensus 140 ~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V---~~~d~~~~~~~~~~~~l~ell~~aDvV~l~~p~~ 204 (311)
T 2cuk_A 140 LDLQGLTLGLVGMGRIGQAVAKRALAFGMRV---VYHARTPKPLPYPFLSLEELLKEADVVSLHTPLT 204 (311)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCEE---EEECSSCCSSSSCBCCHHHHHHHCSEEEECCCCC
T ss_pred cCCCCCEEEEEEECHHHHHHHHHHHHCCCEE---EEECCCCcccccccCCHHHHHhhCCEEEEeCCCC
Confidence 0134667888855545567888999999765 4565443221 0112222336789999987654
No 85
>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A
Probab=80.20 E-value=7.1 Score=30.20 Aligned_cols=106 Identities=9% Similarity=0.022 Sum_probs=68.0
Q ss_pred CCCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcC---CCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEe
Q 026235 58 ERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD---TIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVV 134 (241)
Q Consensus 58 ~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l---~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aI 134 (241)
..++..++.+.|++.|+.+..+.-- + ........++.+ .-+|.++..+..-.+.+...+++.+.+.-.++.|
T Consensus 69 ~~~g~~e~L~~L~~~G~~v~ivT~~---~--~~~~~~~~l~~~gl~~~f~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~i 143 (187)
T 2wm8_A 69 LYPEVPEVLKRLQSLGVPGAAASRT---S--EIEGANQLLELFDLFRYFVHREIYPGSKITHFERLQQKTGIPFSQMIFF 143 (187)
T ss_dssp CCTTHHHHHHHHHHHTCCEEEEECC---S--CHHHHHHHHHHTTCTTTEEEEEESSSCHHHHHHHHHHHHCCCGGGEEEE
T ss_pred cchhHHHHHHHHHHCCceEEEEeCC---C--ChHHHHHHHHHcCcHhhcceeEEEeCchHHHHHHHHHHcCCChHHEEEE
Confidence 3455677888888889776543211 1 012233333333 3467775566666777777777777766678889
Q ss_pred CHHHHH--HHHHhhhccCCCCceeecCCCCCHHHHHHHhhhC
Q 026235 135 GAGTAS--IFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (241)
Q Consensus 135 G~~Ta~--~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~ 174 (241)
|..... ++++. |+.+..+...++.+.+.+.+.+.
T Consensus 144 gD~~~Di~~a~~a------G~~~i~v~~g~~~~~~~~~l~~~ 179 (187)
T 2wm8_A 144 DDERRNIVDVSKL------GVTCIHIQNGMNLQTLSQGLETF 179 (187)
T ss_dssp ESCHHHHHHHHTT------TCEEEECSSSCCHHHHHHHHHHH
T ss_pred eCCccChHHHHHc------CCEEEEECCCCChHHHHHHHHHH
Confidence 977554 45667 99887777777888777777544
No 86
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=80.19 E-value=3.2 Score=34.87 Aligned_cols=123 Identities=12% Similarity=0.066 Sum_probs=65.0
Q ss_pred HHHHHHHCCCcEEEeceEEEeeCCCchH----HHHHHhcCCCccEEEEeCHH--HHHHHHHHHHhcCCCCcEEEEeCHHH
Q 026235 65 LIKALAKHRIDCLELPLIQHAQGPDTDR----LSSVLNADTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGT 138 (241)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~----l~~~l~~l~~~d~IiFTS~~--aV~~f~~~l~~~~~~~~~i~aIG~~T 138 (241)
+.+.++++|+++.....- ..+.+. ++..+ . ..+|.||+.... .+...++.+.+ .++++++++...
T Consensus 22 i~~~~~~~g~~~~~~~~~----~~~~~~~~~~i~~l~-~-~~vdgiIi~~~~~~~~~~~~~~~~~---~~iPvV~~~~~~ 92 (313)
T 2h3h_A 22 VKAAGKALGVDTKFFVPQ----KEDINAQLQMLESFI-A-EGVNGIAIAPSDPTAVIPTIKKALE---MGIPVVTLDTDS 92 (313)
T ss_dssp HHHHHHHHTCEEEEECCS----SSCHHHHHHHHHHHH-H-TTCSEEEECCSSTTTTHHHHHHHHH---TTCCEEEESSCC
T ss_pred HHHHHHHcCCEEEEECCC----CCCHHHHHHHHHHHH-H-cCCCEEEEeCCChHHHHHHHHHHHH---CCCeEEEeCCCC
Confidence 445677789876543210 112222 23333 2 679999986543 22233444443 357888988642
Q ss_pred HHHHHHhhhccCCCCceeecCCCC-CHHHHHHHhhhCCCCccEEEEEccCCCc-------hhHHHHHHhCCCeeeE
Q 026235 139 ASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVR 206 (241)
Q Consensus 139 a~~L~~~~~~~~~Gi~~~~~p~~~-t~e~L~~~l~~~~~~~~~iL~~~g~~~~-------~~L~~~L~~~G~~V~~ 206 (241)
.. .. ++.. +..+.. ....+++.|.+.....++|.++.+.... .-+.+.|++.|+++..
T Consensus 93 ~~---~~------~~~~-V~~d~~~~g~~a~~~L~~~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~ 158 (313)
T 2h3h_A 93 PD---SG------RYVY-IGTDNYQAGYTAGLIMKELLGGKGKVVIGTGSLTAMNSLQRIQGFKDAIKDSEIEIVD 158 (313)
T ss_dssp TT---SC------CSCE-EECCHHHHHHHHHHHHHHHHTSCSEEEEEESCSSCHHHHHHHHHHHHHHTTSSCEEEE
T ss_pred CC---cc------eeEE-ECcCHHHHHHHHHHHHHHHcCCCCEEEEEECCCCCccHHHHHHHHHHHhcCCCCEEEE
Confidence 11 01 2222 333322 2344556665542234799999886432 2356778888887654
No 87
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=79.60 E-value=7 Score=27.54 Aligned_cols=109 Identities=6% Similarity=-0.020 Sum_probs=66.2
Q ss_pred CCeEEEeCCCC-ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeC----HHHHHHHHHHHHhc
Q 026235 50 NPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVFLEAWKEA 124 (241)
Q Consensus 50 g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS----~~aV~~f~~~l~~~ 124 (241)
.++||+.-... ....+.+.|++.|+++... .+..+..+.+.. ..+|.|+.-- .++.+. ...+.+.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~l~~-~~~dlii~D~~l~~~~g~~~-~~~l~~~ 72 (127)
T 3i42_A 3 LQQALIVEDYQAAAETFKELLEMLGFQADYV--------MSGTDALHAMST-RGYDAVFIDLNLPDTSGLAL-VKQLRAL 72 (127)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTTEEEEEE--------SSHHHHHHHHHH-SCCSEEEEESBCSSSBHHHH-HHHHHHS
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCEEEE--------CCHHHHHHHHHh-cCCCEEEEeCCCCCCCHHHH-HHHHHhh
Confidence 46899887764 3567888899998754432 333444445533 5689888742 345443 4445543
Q ss_pred C-CCCcEEEEeCHHH-H--HHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCC
Q 026235 125 G-TPNVRIGVVGAGT-A--SIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG 175 (241)
Q Consensus 125 ~-~~~~~i~aIG~~T-a--~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~ 175 (241)
. ..+++++.+.... . ...... |.. ++..+..+.+.|.+.+....
T Consensus 73 ~~~~~~~ii~~s~~~~~~~~~~~~~------g~~-~~l~KP~~~~~L~~~i~~~~ 120 (127)
T 3i42_A 73 PMEKTSKFVAVSGFAKNDLGKEACE------LFD-FYLEKPIDIASLEPILQSIE 120 (127)
T ss_dssp CCSSCCEEEEEECC-CTTCCHHHHH------HCS-EEEESSCCHHHHHHHHHHHC
T ss_pred hccCCCCEEEEECCcchhHHHHHHH------hhH-HheeCCCCHHHHHHHHHHhh
Confidence 2 3567776654322 1 223344 654 46778899999999987653
No 88
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=79.59 E-value=3.1 Score=35.30 Aligned_cols=75 Identities=12% Similarity=0.112 Sum_probs=47.2
Q ss_pred CCCeEEEeCCC---CChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeC-------HHHHHHHH
Q 026235 49 SNPKVVVTRER---GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS-------PEAGSVFL 118 (241)
Q Consensus 49 ~g~~VLitR~~---~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS-------~~aV~~f~ 118 (241)
..++||+.... .....+.+.|++.|++|..++.-..- .+. ..+.+||.||+.. +..++.+.
T Consensus 3 ~m~~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~--~~~-------~~L~~yDvIIl~d~~~~~l~~~~~~~L~ 73 (259)
T 3rht_A 3 AMTRVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVGL--DVG-------ELLAKQDLVILSDYPAERMTAQAIDQLV 73 (259)
T ss_dssp ---CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTTSCB--CSS-------HHHHTCSEEEEESCCGGGBCHHHHHHHH
T ss_pred CCceEEEECCCCchhHHHHHHHHHHhCCceEEEecccccc--cCh-------hHHhcCCEEEEcCCccccCCHHHHHHHH
Confidence 34789988543 45678999999999999887654321 111 1346899999963 44555666
Q ss_pred HHHHhcCCCCcEEEEeCH
Q 026235 119 EAWKEAGTPNVRIGVVGA 136 (241)
Q Consensus 119 ~~l~~~~~~~~~i~aIG~ 136 (241)
+...+ +--++++|.
T Consensus 74 ~yV~~----GGgLi~~gG 87 (259)
T 3rht_A 74 TMVKA----GCGLVMLGG 87 (259)
T ss_dssp HHHHT----TCEEEEECS
T ss_pred HHHHh----CCeEEEecC
Confidence 65542 455666653
No 89
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=79.35 E-value=1.6 Score=35.22 Aligned_cols=59 Identities=8% Similarity=-0.026 Sum_probs=40.6
Q ss_pred EEEEEccCCC------chhHHHHHHhCCCeeeEeeeeeeecCCC-ChHHHHHHcCCCCEEEEECCc
Q 026235 180 TVLYPASAKA------SNEIEEGLSNRGFEVVRLNTYTTEPVHH-VDQTVLKQALSIPVVAVASPS 238 (241)
Q Consensus 180 ~iL~~~g~~~------~~~L~~~L~~~G~~V~~~~vY~~~~~~~-~~~~~~~~l~~id~IvFtSps 238 (241)
++|++.|.-. ...+.+.+++.|.+|..+.+|+..+... ...+..+.+...|+|||.||.
T Consensus 3 kiLiI~gsp~~~~s~l~~~l~~~~~~~g~ev~~~dL~~~~~~~~~dv~~~~~~l~~AD~iv~~~P~ 68 (192)
T 3f2v_A 3 KTLIILAHPNISQSTVHKHWSDAVRQHTDRFTVHELYAVYPQGKIDVAAEQKLIETHDSLVWQFPI 68 (192)
T ss_dssp CEEEEECCTTGGGCSHHHHHHHHHTTCTTTEEEEEHHHHCTTCCCCHHHHHHHHHTSSSEEEEEEC
T ss_pred EEEEEEeCCCccHHHHHHHHHHHHHhCCCeEEEEEchhcCCCCchhHHHHHHHHHhCCEEEEEcCh
Confidence 4666655432 2346777888899999999998765432 223445556789999999984
No 90
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=79.24 E-value=8.7 Score=32.29 Aligned_cols=156 Identities=9% Similarity=0.012 Sum_probs=77.1
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~ 140 (241)
.-+.+.++++|+++.... . ..+.+...+.++. -..+|.||+++..--..+.... ...++++++.++...
T Consensus 27 ~gi~~~~~~~g~~~~~~~---~--~~~~~~~~~~l~~l~~~~vdgIi~~~~~~~~~~~~~~--~~~p~~p~v~id~~~-- 97 (296)
T 2hqb_A 27 EGLLNIHSNLDVDVVLEE---G--VNSEQKAHRRIKELVDGGVNLIFGHGHAFAEYFSTIH--NQYPDVHFVSFNGEV-- 97 (296)
T ss_dssp HHHHHHHHHSCCEEEEEC---C--CCSHHHHHHHHHHHHHTTCCEEEECSTHHHHHHHTTT--TSCTTSEEEEESCCC--
T ss_pred HHHHHHHHHhCCeEEEEe---C--CCCHHHHHHHHHHHHHCCCCEEEEcCHhHHHHHHHHH--HHCCCCEEEEEecCc--
Confidence 345667788898775432 1 1121111222222 1679999999865433322211 123578999997531
Q ss_pred HHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEccCCCc---hhHHHHHHhCCCeeeEeeeeeeecCCC
Q 026235 141 IFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKAS---NEIEEGLSNRGFEVVRLNTYTTEPVHH 217 (241)
Q Consensus 141 ~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~~~~~~iL~~~g~~~~---~~L~~~L~~~G~~V~~~~vY~~~~~~~ 217 (241)
... .+.. +..+.+.+.-++-.+..+..+.++|.++.|.... .-..+.|++.|.+ ....+|.......
T Consensus 98 --~~~------~~~~-v~~d~~~g~~lag~la~~l~~~~~Ig~i~g~~~~~r~~Gf~~~~~~~~~~-~~~~~~~~~~~~~ 167 (296)
T 2hqb_A 98 --KGE------NITS-LHFEGYAMGYFGGMVAASMSETHKVGVIAAFPWQPEVEGFVDGAKYMNES-EAFVRYVGEWTDA 167 (296)
T ss_dssp --CSS------SEEE-EEECCHHHHHHHHHHHHHTCSSSEEEEEESCTTCHHHHHHHHHHHHTTCC-EEEEEECSSSSCH
T ss_pred --CCC------CEEE-EEechHHHHHHHHHHHHhhccCCeEEEEcCcCchhhHHHHHHHHHHhCCC-eEEEEeeccccCH
Confidence 112 2222 3334443333332323232235799999875432 3356788888876 4444453322111
Q ss_pred -ChHHHHHH-c-CCCCEEEEECC
Q 026235 218 -VDQTVLKQ-A-LSIPVVAVASP 237 (241)
Q Consensus 218 -~~~~~~~~-l-~~id~IvFtSp 237 (241)
...+..+. + ..+|+|+-.+-
T Consensus 168 ~~g~~~a~~ll~~~~daI~~~~D 190 (296)
T 2hqb_A 168 DKALELFQELQKEQVDVFYPAGD 190 (296)
T ss_dssp HHHHHHHHHHHTTTCCEEECCCT
T ss_pred HHHHHHHHHHHHCCCcEEEECCC
Confidence 11122222 3 46887765543
No 91
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=79.13 E-value=4.8 Score=33.30 Aligned_cols=119 Identities=16% Similarity=0.160 Sum_probs=62.4
Q ss_pred HHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhc--CCCccEEEEeCHHHH-HHHHHHHHhcCCCCcEEEEeCHHHHH
Q 026235 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAG-SVFLEAWKEAGTPNVRIGVVGAGTAS 140 (241)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~aV-~~f~~~l~~~~~~~~~i~aIG~~Ta~ 140 (241)
.+.+.++++|+++.... . ..+.+...+.++. -..+|.||+.+...- ......+ ...++++++++....
T Consensus 41 gi~~~~~~~g~~~~~~~---~--~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~~~---~~~~iPvV~~~~~~~- 111 (293)
T 2iks_A 41 YLERQARQRGYQLLIAC---S--EDQPDNEMRCIEHLLQRQVDAIIVSTSLPPEHPFYQRW---ANDPFPIVALDRALD- 111 (293)
T ss_dssp HHHHHHHHTTCEEEEEE---C--TTCHHHHHHHHHHHHHTTCSEEEECCSSCTTCHHHHTT---TTSSSCEEEEESCCC-
T ss_pred HHHHHHHHCCCEEEEEc---C--CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHH---HhCCCCEEEECCccC-
Confidence 34556778898876432 1 1222221122221 267999999765321 1122222 224688998875421
Q ss_pred HHHHhhhccCCCCceeecCCCC-CHHHHHHHhhhCCCCccEEEEEccCCCc-------hhHHHHHHhCCCe
Q 026235 141 IFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFE 203 (241)
Q Consensus 141 ~L~~~~~~~~~Gi~~~~~p~~~-t~e~L~~~l~~~~~~~~~iL~~~g~~~~-------~~L~~~L~~~G~~ 203 (241)
.. ++.. +..+.. ....+++.|.+. ..++|.++.|.... .-+.+.|++.|.+
T Consensus 112 ---~~------~~~~-V~~d~~~~~~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~ 170 (293)
T 2iks_A 112 ---RE------HFTS-VVGADQDDAEMLAEELRKF--PAETVLYLGALPELSVSFLREQGFRTAWKDDPRE 170 (293)
T ss_dssp ---TT------TCEE-EEECHHHHHHHHHHHHHTS--CCSSEEEEEECTTSHHHHHHHHHHHHHHTTCCCC
T ss_pred ---cC------CCCE-EEecCHHHHHHHHHHHHHC--CCCEEEEEecCcccccHHHHHHHHHHHHHHcCCC
Confidence 12 3332 233322 334556666665 24689999876432 2356778888863
No 92
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=79.13 E-value=15 Score=26.31 Aligned_cols=109 Identities=8% Similarity=0.032 Sum_probs=65.3
Q ss_pred CCCeEEEeCCCC-ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeC----HHHHHHHHHHHHh
Q 026235 49 SNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVFLEAWKE 123 (241)
Q Consensus 49 ~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS----~~aV~~f~~~l~~ 123 (241)
...+||+.-... ....+...|++.|+++... .+..+..+.+.. ..+|.|+.-- .++.+.+ ..+.+
T Consensus 3 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~al~~~~~-~~~dlvl~D~~lp~~~g~~~~-~~lr~ 72 (136)
T 3t6k_A 3 KPHTLLIVDDDDTVAEMLELVLRGAGYEVRRA--------ASGEEALQQIYK-NLPDALICDVLLPGIDGYTLC-KRVRQ 72 (136)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------SSHHHHHHHHHH-SCCSEEEEESCCSSSCHHHHH-HHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEe--------CCHHHHHHHHHh-CCCCEEEEeCCCCCCCHHHHH-HHHHc
Confidence 356899887764 3567888899999876532 233333344433 5789888742 3455543 33444
Q ss_pred cC-CCCcEEEEeC-HH---HHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhC
Q 026235 124 AG-TPNVRIGVVG-AG---TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (241)
Q Consensus 124 ~~-~~~~~i~aIG-~~---Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~ 174 (241)
.. ..+++++.+. .. ......+. |.. ++..+..+.+.|...+...
T Consensus 73 ~~~~~~~pii~~t~~~~~~~~~~~~~~------ga~-~~l~KP~~~~~L~~~i~~~ 121 (136)
T 3t6k_A 73 HPLTKTLPILMLTAQGDISAKIAGFEA------GAN-DYLAKPFEPQELVYRVKNI 121 (136)
T ss_dssp SGGGTTCCEEEEECTTCHHHHHHHHHH------TCS-EEEETTCCHHHHHHHHHHH
T ss_pred CCCcCCccEEEEecCCCHHHHHHHHhc------Ccc-eEEeCCCCHHHHHHHHHHH
Confidence 32 2455665543 32 22334455 865 5777889999999888654
No 93
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}
Probab=79.04 E-value=29 Score=30.44 Aligned_cols=167 Identities=13% Similarity=0.072 Sum_probs=92.9
Q ss_pred CCeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHH-HHHHHHHHhcCCCC
Q 026235 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG-SVFLEAWKEAGTPN 128 (241)
Q Consensus 50 g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV-~~f~~~l~~~~~~~ 128 (241)
.++||++.+-. ++..+.|++. +++...+. ....+.+++.+ .+.++|.++..+...+ +.+++.+. ++
T Consensus 28 ~~kvlv~~~~~--~~~~~~l~~~-~~v~~~~~---~~~~~~~~l~~---~~~~~d~li~~~~~~i~~~~l~~~~----~~ 94 (345)
T 4g2n_A 28 IQKAFLCRRFT--PAIEAELRQR-FDLEVNLE---DTVLTPSGIAS---RAHGAEVLFVTATEAITAEVIRKLQ----PG 94 (345)
T ss_dssp CCEEEESSCCC--HHHHHHHHHH-SEEEECTT---CCCCCHHHHHH---HTTTCSEEEECTTSCBCHHHHHHTT----TT
T ss_pred CCEEEEeCCCC--HHHHHHHHcc-CCEEEecC---CCCCCHHHHHH---HhcCCeEEEEeCCCCCCHHHHHhhc----CC
Confidence 57899998764 4556677765 45543221 01112333433 4578999987653222 22333221 24
Q ss_pred cEEEE---eCH--HHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhh------------------------------
Q 026235 129 VRIGV---VGA--GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK------------------------------ 173 (241)
Q Consensus 129 ~~i~a---IG~--~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~------------------------------ 173 (241)
+++++ +|- --.+++++. |+.+.-.| ...++.++|....
T Consensus 95 Lk~I~~~~~G~D~id~~~a~~~------gI~V~n~p-g~~~~~vAE~a~~l~L~~~R~~~~~~~~~r~g~W~~~~~~~~~ 167 (345)
T 4g2n_A 95 LKTIATLSVGYDHIDMAAARSL------GIKVLHTP-DVLSDACAEIAMLLVLNACRRGYEADRMVRSGSWPGWGPTQLL 167 (345)
T ss_dssp CCEEEESSSCCTTBCHHHHHHT------TCEEECCC-SCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCTTTTC
T ss_pred ceEEEEcCCcccccCHHHHHhC------CEEEEECC-cccchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCccccc
Confidence 55543 332 124677888 99886666 4566666554210
Q ss_pred -CCCCccEEEEEccCCCchhHHHHHHhCCCeeeEeeeeeeecCCC-------ChHHHHHHcCCCCEEEEECCcc
Q 026235 174 -NGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHH-------VDQTVLKQALSIPVVAVASPSA 239 (241)
Q Consensus 174 -~~~~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~-------~~~~~~~~l~~id~IvFtSps~ 239 (241)
....|+++.++.-..-...+...|+..|.+|.. |.+.+... ....+.+.+.+.|+|+..-|.+
T Consensus 168 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~---~dr~~~~~~~~~g~~~~~~l~ell~~sDvV~l~~Plt 238 (345)
T 4g2n_A 168 GMGLTGRRLGIFGMGRIGRAIATRARGFGLAIHY---HNRTRLSHALEEGAIYHDTLDSLLGASDIFLIAAPGR 238 (345)
T ss_dssp BCCCTTCEEEEESCSHHHHHHHHHHHTTTCEEEE---ECSSCCCHHHHTTCEECSSHHHHHHTCSEEEECSCCC
T ss_pred ccccCCCEEEEEEeChhHHHHHHHHHHCCCEEEE---ECCCCcchhhhcCCeEeCCHHHHHhhCCEEEEecCCC
Confidence 112467888885555556789999999876544 44432110 0012223346889999988753
No 94
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=78.88 E-value=16 Score=26.48 Aligned_cols=112 Identities=13% Similarity=0.175 Sum_probs=63.8
Q ss_pred CCCCCeEEEeCCCC-ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEe----CHHHHHHHHHHH
Q 026235 47 SNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAW 121 (241)
Q Consensus 47 ~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFT----S~~aV~~f~~~l 121 (241)
...+++||+.-... ....+...|++.|+++... .+.++..+.+. ...+|.|+.- -.+|.+.+.. +
T Consensus 11 ~~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~al~~~~-~~~~dlvl~D~~mp~~~g~~~~~~-l 80 (143)
T 3m6m_D 11 RVRSMRMLVADDHEANRMVLQRLLEKAGHKVLCV--------NGAEQVLDAMA-EEDYDAVIVDLHMPGMNGLDMLKQ-L 80 (143)
T ss_dssp ----CEEEEECSSHHHHHHHHHHHHC--CEEEEE--------SSHHHHHHHHH-HSCCSEEEEESCCSSSCHHHHHHH-H
T ss_pred ccccceEEEEeCCHHHHHHHHHHHHHcCCeEEEe--------CCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHH-H
Confidence 34568899997764 3556778888888766432 23334444443 2678988873 3345544332 3
Q ss_pred H---hcCCCCcEEEEeC-H---HHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCC
Q 026235 122 K---EAGTPNVRIGVVG-A---GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG 175 (241)
Q Consensus 122 ~---~~~~~~~~i~aIG-~---~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~ 175 (241)
. ....+.++++.+. . .....+.+. |.. ++..+..+.+.|.+.+.+..
T Consensus 81 r~~~~~~~~~~pii~~s~~~~~~~~~~~~~~------Ga~-~~l~KP~~~~~L~~~l~~~~ 134 (143)
T 3m6m_D 81 RVMQASGMRYTPVVVLSADVTPEAIRACEQA------GAR-AFLAKPVVAAKLLDTLADLA 134 (143)
T ss_dssp HHHHHTTCCCCCEEEEESCCCHHHHHHHHHT------TCS-EEEESSCCHHHHHHHHHHHC
T ss_pred HhchhccCCCCeEEEEeCCCCHHHHHHHHHc------Chh-heeeCCCCHHHHHHHHHHHH
Confidence 2 2233445555543 2 333444556 876 57778899999999987654
No 95
>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*
Probab=78.66 E-value=19 Score=33.29 Aligned_cols=38 Identities=16% Similarity=0.101 Sum_probs=30.5
Q ss_pred ccccCCCCCCCeEEEe-CCCCChHHHHHHHHHCCCcEEE
Q 026235 41 ATSASASNSNPKVVVT-RERGKNGKLIKALAKHRIDCLE 78 (241)
Q Consensus 41 ~~~~~~~l~g~~VLit-R~~~~~~~l~~~L~~~G~~v~~ 78 (241)
+-..++||+|.||... --..+.-.|.+.|.+.|++|..
T Consensus 66 ~~~~~~pl~G~ri~~~lh~~~~ta~li~tL~~~GA~V~~ 104 (494)
T 3d64_A 66 EYKAQQPLKGARIAGSLHMTIQTGVLIETLKALGADVRW 104 (494)
T ss_dssp HTTTTCTTTTCEEEEESCCSHHHHHHHHHHHHTTCEEEE
T ss_pred HHhccCCCCCCEEEEEeCCcHHHHHHHHHHHhCCCEEEE
Confidence 3456899999999984 4455677899999999999963
No 96
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=78.62 E-value=16 Score=26.16 Aligned_cols=109 Identities=15% Similarity=0.144 Sum_probs=64.8
Q ss_pred CCeEEEeCCCC-ChHHHHHHHHH-CCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEe-----CHHHHHHHHHHHH
Q 026235 50 NPKVVVTRERG-KNGKLIKALAK-HRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT-----SPEAGSVFLEAWK 122 (241)
Q Consensus 50 g~~VLitR~~~-~~~~l~~~L~~-~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFT-----S~~aV~~f~~~l~ 122 (241)
+++|||.-... ....+...|++ .|+++... .+..+..+.+.....+|.|+.- ..++.+. ...+.
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~--------~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~-~~~l~ 74 (140)
T 3lua_A 4 DGTVLLIDYFEYEREKTKIIFDNIGEYDFIEV--------ENLKKFYSIFKDLDSITLIIMDIAFPVEKEGLEV-LSAIR 74 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHCCCEEEEE--------CSHHHHHTTTTTCCCCSEEEECSCSSSHHHHHHH-HHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhccCccEEEE--------CCHHHHHHHHhcCCCCcEEEEeCCCCCCCcHHHH-HHHHH
Confidence 57899887764 35678888888 88866532 2333333334221568988874 3345444 34444
Q ss_pred hc-CCCCcEEEEeCH----HHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhC
Q 026235 123 EA-GTPNVRIGVVGA----GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (241)
Q Consensus 123 ~~-~~~~~~i~aIG~----~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~ 174 (241)
+. ..++++++.+.. .....+.+. |.. ++..+..+.+.|.+.|...
T Consensus 75 ~~~~~~~~~ii~ls~~~~~~~~~~~~~~------g~~-~~l~KP~~~~~l~~~i~~~ 124 (140)
T 3lua_A 75 NNSRTANTPVIIATKSDNPGYRHAALKF------KVS-DYILKPYPTKRLENSVRSV 124 (140)
T ss_dssp HSGGGTTCCEEEEESCCCHHHHHHHHHS------CCS-EEEESSCCTTHHHHHHHHH
T ss_pred hCcccCCCCEEEEeCCCCHHHHHHHHHc------CCC-EEEECCCCHHHHHHHHHHH
Confidence 41 234566665542 233334455 866 4677778888998888754
No 97
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=78.46 E-value=8.2 Score=32.55 Aligned_cols=93 Identities=13% Similarity=0.137 Sum_probs=51.9
Q ss_pred CCccEEEEeCHH--HHHHHHHHHHhcCCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCC-CHHHHHHHhhhCCCC
Q 026235 101 TIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKK 177 (241)
Q Consensus 101 ~~~d~IiFTS~~--aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~-t~e~L~~~l~~~~~~ 177 (241)
..+|+||+.+.. .+...++.+.+ .++++++++..... .. .+. .+..+.. .+..+++.|.+....
T Consensus 61 ~~vdgiIi~~~~~~~~~~~~~~~~~---~~iPvV~~~~~~~~---~~------~~~-~V~~D~~~~g~~a~~~L~~~~~G 127 (325)
T 2x7x_A 61 EGVDLLIISANEAAPMTPIVEEAYQ---KGIPVILVDRKILS---DK------YTA-YIGADNYEIGRSVGNYIASSLKG 127 (325)
T ss_dssp TTCSEEEECCSSHHHHHHHHHHHHH---TTCCEEEESSCCSS---SC------SSE-EEEECHHHHHHHHHHHHHHHTTT
T ss_pred cCCCEEEEeCCCHHHHHHHHHHHHH---CCCeEEEeCCCCCC---cc------eeE-EEecCHHHHHHHHHHHHHHHcCC
Confidence 679999987543 33334444443 35789999854211 01 122 2233322 345556666654223
Q ss_pred ccEEEEEccCCCc-------hhHHHHHHhC-CCeeeE
Q 026235 178 KCTVLYPASAKAS-------NEIEEGLSNR-GFEVVR 206 (241)
Q Consensus 178 ~~~iL~~~g~~~~-------~~L~~~L~~~-G~~V~~ 206 (241)
.++|.++.|.... .-+.+.|++. |+++..
T Consensus 128 ~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~pg~~~~~ 164 (325)
T 2x7x_A 128 KGNIVELTGLSGSTPAMERHQGFMAAISKFPDIKLID 164 (325)
T ss_dssp EEEEEEEESCTTSHHHHHHHHHHHHHHHTCTEEEEEE
T ss_pred CceEEEEECCCCCccHHHHHHHHHHHHHhCCCCEEEe
Confidence 4789999886433 2356677777 776654
No 98
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=78.36 E-value=9 Score=30.60 Aligned_cols=68 Identities=12% Similarity=0.130 Sum_probs=44.0
Q ss_pred cCCCccEEEEeCHHHHHHHHHH-HHhcCCCCcEEEE--eCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhh
Q 026235 99 ADTIFDWIIITSPEAGSVFLEA-WKEAGTPNVRIGV--VGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (241)
Q Consensus 99 ~l~~~d~IiFTS~~aV~~f~~~-l~~~~~~~~~i~a--IG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~ 172 (241)
.+.+.|+||.+.++......-. ......+..++++ -++...+.+++. |....+.|....+..|.+.+.
T Consensus 62 ~i~~ad~vi~~~~~d~~n~~~~~~a~~~~~~~~iia~~~~~~~~~~l~~~------G~d~vi~p~~~~~~~l~~~~~ 132 (218)
T 3l4b_C 62 EVSKNDVVVILTPRDEVNLFIAQLVMKDFGVKRVVSLVNDPGNMEIFKKM------GITTVLNLTTLITNTVEALIF 132 (218)
T ss_dssp TCCTTCEEEECCSCHHHHHHHHHHHHHTSCCCEEEECCCSGGGHHHHHHH------TCEECCCHHHHHHHHHHHHHC
T ss_pred CcccCCEEEEecCCcHHHHHHHHHHHHHcCCCeEEEEEeCcchHHHHHHC------CCCEEECHHHHHHHHHHHHhc
Confidence 3678999999887665443322 2222124455554 577888899998 998666776666666766664
No 99
>3aek_B Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_B* 3aer_B 3aes_B* 3aeu_B 3aet_B
Probab=77.93 E-value=7.9 Score=36.06 Aligned_cols=138 Identities=20% Similarity=0.193 Sum_probs=83.6
Q ss_pred ChHHHHHHHHHCCCcEEEe-ceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHh-cCCCCcEEEEeC-HH
Q 026235 61 KNGKLIKALAKHRIDCLEL-PLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE-AGTPNVRIGVVG-AG 137 (241)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~-P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~-~~~~~~~i~aIG-~~ 137 (241)
...++.+.|++.|+++..+ | .....++ +..++..+.-+..++..-....+.+++ .+.+-+...-+| ..
T Consensus 171 D~~eikrlL~~~Gi~v~~~~p-----gg~t~~e----i~~~~~A~~niv~~~~~g~~~A~~Le~r~GiP~i~~~PiG~~~ 241 (525)
T 3aek_B 171 DVAEVTKLLATMGIKVNVCAP-----LGASPDD----LRKLGQAHFNVLMYPETGESAARHLERACKQPFTKIVPIGVGA 241 (525)
T ss_dssp HHHHHHHHHHTTTCEEEEEEE-----TTCCHHH----HHTGGGSSEEEECCHHHHHHHHHHHHHHSCCCBCCCCCCSHHH
T ss_pred hHHHHHHHHHHCCCeEEEEeC-----CCCCHHH----HHhhccCCEEEEEChhhHHHHHHHHHHHcCCCceecCCcCHHH
Confidence 3468999999999999874 2 1122233 335577788888888766777777765 455544446788 67
Q ss_pred HHHHHHHhhhccCCCCceeecCC-CCCHHHHHHHhh-hCCCCccEEEEEccCCCchhHHHHH-HhCCCeeeEeeeee
Q 026235 138 TASIFEEVIQSSKCSLDVAFSPS-KATGKILASELP-KNGKKKCTVLYPASAKASNEIEEGL-SNRGFEVVRLNTYT 211 (241)
Q Consensus 138 Ta~~L~~~~~~~~~Gi~~~~~p~-~~t~e~L~~~l~-~~~~~~~~iL~~~g~~~~~~L~~~L-~~~G~~V~~~~vY~ 211 (241)
|.+.|++. ..++|... .... ..-..- ++.+. .....|+++++..+..-.-.|...| .+.|.++..+..|.
T Consensus 242 T~~~Lr~i--a~~~g~~~-~i~~~r~~~~~-~~~~~d~~~l~GKrv~i~gd~~~~~~la~~L~~ElGm~vv~~gt~~ 314 (525)
T 3aek_B 242 TRDFLAEV--SKITGLPV-VTDESTLRQPW-WSASVDSTYLTGKRVFIFGDGTHVIAAARIAAKEVGFEVVGMGCYN 314 (525)
T ss_dssp HHHHHHHH--HHHHCCCC-CCCCTTCCHHH-HHHSGGGGGGTTCEEEECSSHHHHHHHHHHHHHTTCCEEEEEEESC
T ss_pred HHHHHHHH--HHHHCCCH-HHHHHHHHHHH-HHHhhhhhhcCCCEEEEEcCchHHHHHHHHHHHHcCCeeEEEecCc
Confidence 88888775 22336654 2221 111111 12221 1223578998873332334588889 79999987666554
No 100
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=77.21 E-value=16 Score=25.65 Aligned_cols=108 Identities=13% Similarity=0.124 Sum_probs=63.9
Q ss_pred CCeEEEeCCCC-ChHHHHHHHHHCCC--cEEEeceEEEeeCCCchHHHHHHhcC------CCccEEEEe----CHHHHHH
Q 026235 50 NPKVVVTRERG-KNGKLIKALAKHRI--DCLELPLIQHAQGPDTDRLSSVLNAD------TIFDWIIIT----SPEAGSV 116 (241)
Q Consensus 50 g~~VLitR~~~-~~~~l~~~L~~~G~--~v~~~P~~~~~~~~~~~~l~~~l~~l------~~~d~IiFT----S~~aV~~ 116 (241)
+++||+.-... ....+.+.|++.|+ .+.. ..+..+..+.+... ..+|.|+.- ..++.+.
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~--------~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~ 73 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVPHEVVT--------VRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREV 73 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCEEEE--------ECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCceEEE--------ECCHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHH
Confidence 67899887764 35678888998887 3332 23444444555331 578988863 2345443
Q ss_pred HHHHHHhcC-CCCcEEEEeC-HH---HHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhh
Q 026235 117 FLEAWKEAG-TPNVRIGVVG-AG---TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (241)
Q Consensus 117 f~~~l~~~~-~~~~~i~aIG-~~---Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~ 173 (241)
...+.+.. .++++++.+. .. ....+.+. |.. ++..+..+.+.|.+.|..
T Consensus 74 -~~~l~~~~~~~~~pii~ls~~~~~~~~~~~~~~------g~~-~~l~kP~~~~~l~~~i~~ 127 (140)
T 1k68_A 74 -LAEIKSDPTLKRIPVVVLSTSINEDDIFHSYDL------HVN-CYITKSANLSQLFQIVKG 127 (140)
T ss_dssp -HHHHHHSTTGGGSCEEEEESCCCHHHHHHHHHT------TCS-EEEECCSSHHHHHHHHHH
T ss_pred -HHHHHcCcccccccEEEEecCCcHHHHHHHHHh------chh-heecCCCCHHHHHHHHHH
Confidence 44454432 2456666553 22 23333445 776 467778899999887764
No 101
>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A
Probab=77.02 E-value=11 Score=31.02 Aligned_cols=86 Identities=12% Similarity=-0.019 Sum_probs=55.2
Q ss_pred CCCCCCeEEEeCCC---CChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEE----eCHHHHHHHH
Q 026235 46 ASNSNPKVVVTRER---GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIII----TSPEAGSVFL 118 (241)
Q Consensus 46 ~~l~g~~VLitR~~---~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiF----TS~~aV~~f~ 118 (241)
..|+||++|||... .-...+++.|.+.|++|... ++.+ ...+++.+.+++.+..+...+ |+..+++.++
T Consensus 2 ~~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~--~r~~--~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~ 77 (256)
T 4fs3_A 2 LNLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFT--YRKE--RSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGF 77 (256)
T ss_dssp CCCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEE--ESSG--GGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEE--ECCH--HHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHH
Confidence 46899999999853 34678999999999998653 2211 123455555655554444443 7899999888
Q ss_pred HHHHh-cCCCCcEEEEeC
Q 026235 119 EAWKE-AGTPNVRIGVVG 135 (241)
Q Consensus 119 ~~l~~-~~~~~~~i~aIG 135 (241)
+...+ .+.-+.-+-..|
T Consensus 78 ~~~~~~~G~iD~lvnnAg 95 (256)
T 4fs3_A 78 EQIGKDVGNIDGVYHSIA 95 (256)
T ss_dssp HHHHHHHCCCSEEEECCC
T ss_pred HHHHHHhCCCCEEEeccc
Confidence 77654 333344444444
No 102
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=77.01 E-value=19 Score=26.26 Aligned_cols=110 Identities=9% Similarity=0.086 Sum_probs=66.0
Q ss_pred CCCCCCeEEEeCCCC-ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeC----HHHHHHHHHH
Q 026235 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVFLEA 120 (241)
Q Consensus 46 ~~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS----~~aV~~f~~~ 120 (241)
....+++|||.-... ....+...|++.|+++... .+..+....+.. ..+|.|++-- .++.+.+ ..
T Consensus 10 ~~~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~l~~-~~~dlvi~D~~l~~~~g~~~~-~~ 79 (153)
T 3hv2_A 10 TVTRRPEILLVDSQEVILQRLQQLLSPLPYTLHFA--------RDATQALQLLAS-REVDLVISAAHLPQMDGPTLL-AR 79 (153)
T ss_dssp CCCSCCEEEEECSCHHHHHHHHHHHTTSSCEEEEE--------SSHHHHHHHHHH-SCCSEEEEESCCSSSCHHHHH-HH
T ss_pred hccCCceEEEECCCHHHHHHHHHHhcccCcEEEEE--------CCHHHHHHHHHc-CCCCEEEEeCCCCcCcHHHHH-HH
Confidence 344567899987764 3566788888888665432 333444444533 5789888742 3444433 33
Q ss_pred HHhcCCCCcEEEEeCHH-H---HHHHHHhhhccCCC-CceeecCCCCCHHHHHHHhhh
Q 026235 121 WKEAGTPNVRIGVVGAG-T---ASIFEEVIQSSKCS-LDVAFSPSKATGKILASELPK 173 (241)
Q Consensus 121 l~~~~~~~~~i~aIG~~-T---a~~L~~~~~~~~~G-i~~~~~p~~~t~e~L~~~l~~ 173 (241)
+.+. .++++++++... . ...+.+. | .. ++..+..+.+.|...|..
T Consensus 80 l~~~-~~~~~ii~~s~~~~~~~~~~~~~~------g~~~-~~l~KP~~~~~l~~~i~~ 129 (153)
T 3hv2_A 80 IHQQ-YPSTTRILLTGDPDLKLIAKAINE------GEIY-RYLSKPWDDQELLLALRQ 129 (153)
T ss_dssp HHHH-CTTSEEEEECCCCCHHHHHHHHHT------TCCS-EEECSSCCHHHHHHHHHH
T ss_pred HHhH-CCCCeEEEEECCCCHHHHHHHHhC------CCcc-eEEeCCCCHHHHHHHHHH
Confidence 4443 245677666542 2 2233344 6 55 577788899999888864
No 103
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=76.36 E-value=5.3 Score=30.74 Aligned_cols=66 Identities=18% Similarity=0.206 Sum_probs=39.0
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHH---HH--HHHHHHHHhcCCCCcEEEEeC
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE---AG--SVFLEAWKEAGTPNVRIGVVG 135 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~---aV--~~f~~~l~~~~~~~~~i~aIG 135 (241)
+.+++.|++.|+++..+.+-+ .+...+ +..+.++|.|||-||. .+ +.|++.+....+.+.+++++|
T Consensus 19 ~~ia~~l~~~g~~v~~~~~~~----~~~~~~---~~~~~~~d~ii~Gspty~g~~p~~~fl~~l~~~~l~gk~v~~fg 89 (161)
T 3hly_A 19 QAIGRGLVKTGVAVEMVDLRA----VDPQEL---IEAVSSARGIVLGTPPSQPSEAVATALSTIFAAAHNKQAIGLFD 89 (161)
T ss_dssp HHHHHHHHHTTCCEEEEETTT----CCHHHH---HHHHHHCSEEEEECCBSSCCHHHHHHHHHHHHHCCTTSEEEEEC
T ss_pred HHHHHHHHhCCCeEEEEECCC----CCHHHH---HHHHHhCCEEEEEcCCcCCchhHHHHHHHHHhhhhCCCEEEEEE
Confidence 345556667788765443221 122222 2234578999998873 11 466666655456788888887
No 104
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=76.15 E-value=1.6 Score=32.47 Aligned_cols=61 Identities=11% Similarity=0.147 Sum_probs=40.2
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHH---------HHHHHHHHHHhcCCCCcEEEE
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE---------AGSVFLEAWKEAGTPNVRIGV 133 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~---------aV~~f~~~l~~~~~~~~~i~a 133 (241)
+.+++.|++.|+++..+.+-+. +. .++.++|.|+|-||. .++.|++.+... +.+.++++
T Consensus 17 ~~ia~~l~~~g~~v~~~~~~~~----~~-------~~l~~~d~iiig~pty~~g~~p~~~~~~fl~~l~~~-l~~k~~~~ 84 (138)
T 5nul_A 17 ELIAKGIIESGKDVNTINVSDV----NI-------DELLNEDILILGCSAMTDEVLEESEFEPFIEEISTK-ISGKKVAL 84 (138)
T ss_dssp HHHHHHHHHTTCCCEEEEGGGC----CH-------HHHTTCSEEEEEECCBTTTBCCTTTHHHHHHHHGGG-CTTCEEEE
T ss_pred HHHHHHHHHCCCeEEEEEhhhC----CH-------HHHhhCCEEEEEcCccCCCCCChHHHHHHHHHHHhh-cCCCEEEE
Confidence 4455566778887665433221 11 134689999998873 488888887654 67788888
Q ss_pred eC
Q 026235 134 VG 135 (241)
Q Consensus 134 IG 135 (241)
+|
T Consensus 85 f~ 86 (138)
T 5nul_A 85 FG 86 (138)
T ss_dssp EE
T ss_pred EE
Confidence 87
No 105
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=75.77 E-value=9.7 Score=29.24 Aligned_cols=68 Identities=13% Similarity=0.064 Sum_probs=39.8
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHH---H--HHHHHHHHHhcCCCCcEEEEeCH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE---A--GSVFLEAWKEAGTPNVRIGVVGA 136 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~---a--V~~f~~~l~~~~~~~~~i~aIG~ 136 (241)
+.+++.|++.|+++..+.+-+ ..+...+ +..+.++|.|||-||. . ...|+..+......+.+++++|.
T Consensus 23 ~~ia~~l~~~g~~v~~~~~~~---~~~~~~~---~~~~~~~d~ii~Gspty~g~~p~~~~l~~l~~~~~~~k~va~fgs 95 (159)
T 3fni_A 23 QAIINGITKTGVGVDVVDLGA---AVDLQEL---RELVGRCTGLVIGMSPAASAASIQGALSTILGSVNEKQAVGIFET 95 (159)
T ss_dssp HHHHHHHHHTTCEEEEEESSS---CCCHHHH---HHHHHTEEEEEEECCBTTSHHHHHHHHHHHHHHCCTTSEEEEECC
T ss_pred HHHHHHHHHCCCeEEEEECcC---cCCHHHH---HHHHHhCCEEEEEcCcCCCCccHHHHHHHHHhhcccCCEEEEEEc
Confidence 344556667787765443322 1022222 2334679999999973 1 24566666555567788888883
No 106
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=75.63 E-value=1.7 Score=36.30 Aligned_cols=152 Identities=9% Similarity=0.019 Sum_probs=80.4
Q ss_pred HHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHHH
Q 026235 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (241)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~ 141 (241)
.+.+.++++|+++..... ..+.+...+.++. -..+|.||+.+...-. .+......+++++++|.....
T Consensus 35 gi~~~a~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~----~~~~~~~~~iPvV~~~~~~~~- 104 (301)
T 3miz_A 35 GIQDWANANGKTILIANT-----GGSSEREVEIWKMFQSHRIDGVLYVTMYRRI----VDPESGDVSIPTVMINCRPQT- 104 (301)
T ss_dssp HHHHHHHHTTCEEEEEEC-----TTCHHHHHHHHHHHHHTTCSEEEEEEEEEEE----CCCCCTTCCCCEEEEEEECSS-
T ss_pred HHHHHHHHCCCEEEEEeC-----CCChHHHHHHHHHHHhCCCCEEEEecCCccH----HHHHHHhCCCCEEEECCCCCC-
Confidence 456678889988875431 1222211222211 2689999987654211 111222247889999864211
Q ss_pred HHHhhhccCCCCceeecCCCC-CHHHHHHHhhhCCCCccEEEEEccCCCc-------hhHHHHHHhCCCeeeEeeeeee-
Q 026235 142 FEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTT- 212 (241)
Q Consensus 142 L~~~~~~~~~Gi~~~~~p~~~-t~e~L~~~l~~~~~~~~~iL~~~g~~~~-------~~L~~~L~~~G~~V~~~~vY~~- 212 (241)
.. ++.. +..+.+ .+...++.|.+. ..++|.++.|.... .-+.+.|++.|..+....++..
T Consensus 105 --~~------~~~~-V~~D~~~~g~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~ 173 (301)
T 3miz_A 105 --RE------LLPS-IEPDDYQGARDLTRYLLER--GHRRIGYIRLNPILLGAELRLDAFRRTTSEFGLTENDLSISLGM 173 (301)
T ss_dssp --TT------SSCE-EEECHHHHHHHHHHHHHTT--TCCSEEEEECCTTSHHHHHHHHHHHHHHHHHTCCGGGEEEEECE
T ss_pred --CC------CCCE-EeeChHHHHHHHHHHHHHc--CCCeEEEEecCccchhHHHHHHHHHHHHHHcCCCCCcceEEEcC
Confidence 00 1121 233322 345556666664 34689999886543 2356778888988765555544
Q ss_pred --ecCCCCh---HHHHHHc---CCCCEEEEEC
Q 026235 213 --EPVHHVD---QTVLKQA---LSIPVVAVAS 236 (241)
Q Consensus 213 --~~~~~~~---~~~~~~l---~~id~IvFtS 236 (241)
....... ..+.+.+ ..+|+|+.++
T Consensus 174 ~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~ 205 (301)
T 3miz_A 174 DGPVGAENNYVFAAATEMLKQDDRPTAIMSGN 205 (301)
T ss_dssp ESSTTSCEECHHHHHHHHHTSTTCCSEEEESS
T ss_pred CCCcCccccHHHHHHHHHHcCCCCCcEEEECC
Confidence 2222211 2233333 4688887654
No 107
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=75.58 E-value=12 Score=26.90 Aligned_cols=108 Identities=11% Similarity=0.093 Sum_probs=63.6
Q ss_pred CCCCeEEEeCCCC-ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeC-----HHHHHHHHHHH
Q 026235 48 NSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS-----PEAGSVFLEAW 121 (241)
Q Consensus 48 l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS-----~~aV~~f~~~l 121 (241)
+.+++||+.-... ....+...|++.|+++... .+..+....+..-..+|.|+.-- .++.+. ...+
T Consensus 3 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~-~~~l 73 (140)
T 3h5i_A 3 LKDKKILIVEDSKFQAKTIANILNKYGYTVEIA--------LTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQT-ALAI 73 (140)
T ss_dssp ---CEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------SSHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHH-HHHH
T ss_pred CCCcEEEEEeCCHHHHHHHHHHHHHcCCEEEEe--------cChHHHHHHHhcCCCCCEEEEeccCCCCCCHHHH-HHHH
Confidence 4568899987764 4567888999999775532 23333344443325789888742 345544 3334
Q ss_pred HhcCCCCcEEEEeCHHHH-H---HHHHhhhccCCCCceeecCCCCCHHHHHHHhhh
Q 026235 122 KEAGTPNVRIGVVGAGTA-S---IFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (241)
Q Consensus 122 ~~~~~~~~~i~aIG~~Ta-~---~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~ 173 (241)
.+. ++++++.+..... + .+.+. |.. ++..+..+.+.|.+.|..
T Consensus 74 ~~~--~~~~ii~ls~~~~~~~~~~~~~~------g~~-~~l~KP~~~~~l~~~i~~ 120 (140)
T 3h5i_A 74 QQI--SELPVVFLTAHTEPAVVEKIRSV------TAY-GYVMKSATEQVLITIVEM 120 (140)
T ss_dssp HHH--CCCCEEEEESSSSCCCCGGGGGS------CEE-EEEETTCCHHHHHHHHHH
T ss_pred HhC--CCCCEEEEECCCCHHHHHHHHhC------CCc-EEEeCCCCHHHHHHHHHH
Confidence 443 4566666543322 1 23334 754 577778899999888754
No 108
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}
Probab=75.22 E-value=11 Score=32.39 Aligned_cols=165 Identities=15% Similarity=0.123 Sum_probs=90.0
Q ss_pred CCCeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHH-HHHHHHHHhcCCC
Q 026235 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG-SVFLEAWKEAGTP 127 (241)
Q Consensus 49 ~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV-~~f~~~l~~~~~~ 127 (241)
..++|+++.+- .+...+.|++.|+++.. ....+.+++.+ .+.++|.++..+...+ +.+++.+ +
T Consensus 4 ~~mkil~~~~~--~~~~~~~l~~~~~~v~~------~~~~~~~~~~~---~~~~~d~~i~~~~~~~~~~~l~~~-----~ 67 (313)
T 2ekl_A 4 YTVKALITDPI--DEILIKTLREKGIQVDY------MPEISKEELLN---IIGNYDIIVVRSRTKVTKDVIEKG-----K 67 (313)
T ss_dssp CCCEEEECSCC--CHHHHHHHHHTTCEEEE------CTTCCHHHHHH---HGGGCSEEEECSSSCBCHHHHHHC-----T
T ss_pred cceEEEEECCC--CHHHHHHHHhCCcEEEe------CCCCCHHHHHH---HhcCCeEEEEcCCCCCCHHHHhhC-----C
Confidence 34789998764 34556788888866532 11112334433 3467899887542211 1223322 3
Q ss_pred CcEEEE-eCHH----HHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhh-------h-------------------CCC
Q 026235 128 NVRIGV-VGAG----TASIFEEVIQSSKCSLDVAFSPSKATGKILASELP-------K-------------------NGK 176 (241)
Q Consensus 128 ~~~i~a-IG~~----Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~-------~-------------------~~~ 176 (241)
++++++ .|-. -.+++.+. |+.+.-.| ..+++.++|... + ...
T Consensus 68 ~Lk~I~~~~~G~d~id~~~~~~~------gi~v~n~~-g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~l 140 (313)
T 2ekl_A 68 KLKIIARAGIGLDNIDTEEAEKR------NIKVVYAP-GASTDSAVELTIGLMIAAARKMYTSMALAKSGIFKKIEGLEL 140 (313)
T ss_dssp TCCEEEECSSCCTTBCHHHHHHT------TCEEECCT-TTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCCC
T ss_pred CCeEEEEcCCCCCccCHHHHHhC------CeEEEeCC-CCCchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCCCCCC
Confidence 444443 2222 23567888 99876555 345555544321 0 123
Q ss_pred CccEEEEEccCCCchhHHHHHHhCCCeeeEeeeeeeecCCCC-------hHHHHHHcCCCCEEEEECCcc
Q 026235 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHV-------DQTVLKQALSIPVVAVASPSA 239 (241)
Q Consensus 177 ~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~-------~~~~~~~l~~id~IvFtSps~ 239 (241)
.|+++.++....-...+...|+..|++| .+|.+.+.... ...+.+.+.+.|+|+..-|.+
T Consensus 141 ~g~~vgIIG~G~IG~~~A~~l~~~G~~V---~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvVvl~~P~~ 207 (313)
T 2ekl_A 141 AGKTIGIVGFGRIGTKVGIIANAMGMKV---LAYDILDIREKAEKINAKAVSLEELLKNSDVISLHVTVS 207 (313)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHHTTCEE---EEECSSCCHHHHHHTTCEECCHHHHHHHCSEEEECCCCC
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHCCCEE---EEECCCcchhHHHhcCceecCHHHHHhhCCEEEEeccCC
Confidence 5678888855555567888999999765 45544332100 001122235789999887743
No 109
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=75.02 E-value=5.6 Score=33.29 Aligned_cols=87 Identities=10% Similarity=0.050 Sum_probs=53.0
Q ss_pred CCCCeEEEeCCCC----ChHHH----HHHHHHCCCcEEEeceEEEeeCCC-----chHHHHHHhcCCCccEEEEeCH---
Q 026235 48 NSNPKVVVTRERG----KNGKL----IKALAKHRIDCLELPLIQHAQGPD-----TDRLSSVLNADTIFDWIIITSP--- 111 (241)
Q Consensus 48 l~g~~VLitR~~~----~~~~l----~~~L~~~G~~v~~~P~~~~~~~~~-----~~~l~~~l~~l~~~d~IiFTS~--- 111 (241)
...++||+.-+.. .+..+ .+.+++.|+++..+.+.+.. +.+ .+.+.+..+.+...|.|||.||
T Consensus 32 ~~~mkIliI~GS~r~~s~t~~La~~~~~~l~~~g~eve~idL~~~p-l~~~d~~~~d~~~~l~~~i~~AD~iI~~sP~Yn 110 (247)
T 2q62_A 32 THRPRILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFDPSGLP-LPDAAPVSHPKVQELRELSIWSEGQVWVSPERH 110 (247)
T ss_dssp CSCCEEEEEECCCCSSCHHHHHHHHHHHHHHHTTCEEEECCCTTCC-CTTSSCTTSHHHHHHHHHHHHCSEEEEEEECSS
T ss_pred CCCCeEEEEEccCCCCCHHHHHHHHHHHHHhhCCCEEEEEEhhcCC-CCcCCCCCCHHHHHHHHHHHHCCEEEEEeCCCC
Confidence 3456777664443 23333 44556679998887765532 111 2334555556678999999995
Q ss_pred ----HHHHHHHHHHHhc-----CCCCcEEEEeC
Q 026235 112 ----EAGSVFLEAWKEA-----GTPNVRIGVVG 135 (241)
Q Consensus 112 ----~aV~~f~~~l~~~-----~~~~~~i~aIG 135 (241)
...++|++.+... .+.++++++|+
T Consensus 111 ~sipa~LKn~iD~l~~~~~~~~~l~gK~v~~v~ 143 (247)
T 2q62_A 111 GAMTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQ 143 (247)
T ss_dssp SSCCHHHHHHHHTSCSCBTTBCSSTTCEEEEEE
T ss_pred CCccHHHHHHHHHhhhccCcccccCCCEEEEEE
Confidence 6888998877432 24566665554
No 110
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=74.72 E-value=26 Score=29.41 Aligned_cols=170 Identities=9% Similarity=0.027 Sum_probs=88.3
Q ss_pred CeEEEeCCCCC------hHHHHHHHHHCCCc----EEEeceEEEeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHH
Q 026235 51 PKVVVTRERGK------NGKLIKALAKHRID----CLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFL 118 (241)
Q Consensus 51 ~~VLitR~~~~------~~~l~~~L~~~G~~----v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~aV~~f~ 118 (241)
.+|-|+.--+. .+-+.+.|++.|+. +.. - ++... .|...+....+. -.++|.|+-.+..+.....
T Consensus 9 ~~igi~q~~~hp~ld~~~~G~~~~L~~~G~~~g~nv~~-~-~~~a~-gd~~~~~~~~~~l~~~~~DlIiai~t~aa~a~~ 85 (302)
T 3lkv_A 9 AKVAVSQIVEHPALDATRQGLLDGLKAKGYEEGKNLEF-D-YKTAQ-GNPAIAVQIARQFVGENPDVLVGIATPTAQALV 85 (302)
T ss_dssp EEEEEEESCCCHHHHHHHHHHHHHHHHTTCCBTTTEEE-E-EEECT-TCHHHHHHHHHHHHTTCCSEEEEESHHHHHHHH
T ss_pred ceEEEEEeecChhHHHHHHHHHHHHHhhCcccCCcEEE-E-EEeCC-CCHHHHHHHHHHHHhcCCcEEEEcCCHHHHHHH
Confidence 55766654321 24477788998864 332 1 22111 233322222222 2689988877777766655
Q ss_pred HHHHhcCCCCcEEEEeCH---HHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEccCCC------
Q 026235 119 EAWKEAGTPNVRIGVVGA---GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA------ 189 (241)
Q Consensus 119 ~~l~~~~~~~~~i~aIG~---~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~~~~~~iL~~~g~~~------ 189 (241)
... .+++++..|- ..+...... ..-|-.+.-+.+....+.-++.+.+..+..+++.++.....
T Consensus 86 ~~~-----~~iPVVf~~v~dp~~~~l~~~~---~~~g~nvtGv~~~~~~~~~l~l~~~l~P~~k~vgvi~~~~~~~s~~~ 157 (302)
T 3lkv_A 86 SAT-----KTIPIVFTAVTDPVGAKLVKQL---EQPGKNVTGLSDLSPVEQHVELIKEILPNVKSIGVVYNPGEANAVSL 157 (302)
T ss_dssp HHC-----SSSCEEEEEESCTTTTTSCSCS---SSCCSSEEEEECCCCHHHHHHHHHHHSTTCCEEEEEECTTCHHHHHH
T ss_pred hhc-----CCCCeEEEecCCcchhhhcccc---cCCCCcEEEEECCcCHHHHHHHHHHhCCCCCEEEEEeCCCcccHHHH
Confidence 431 3455554432 111111111 00032333334555677778888877666678877754321
Q ss_pred chhHHHHHHhCCCeeeEeeeeeeecCCCChHHHHHHc-CCCCEEEEE
Q 026235 190 SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA-LSIPVVAVA 235 (241)
Q Consensus 190 ~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~l-~~id~IvFt 235 (241)
.+.+.+.+++.|+++.+..+..+.. ..+....+ +++|++...
T Consensus 158 ~~~~~~~~~~~g~~~v~~~~~~~~~----~~~~~~~l~~~~d~i~~~ 200 (302)
T 3lkv_A 158 MELLKLSAAKHGIKLVEATALKSAD----VQSATQAIAEKSDVIYAL 200 (302)
T ss_dssp HHHHHHHHHHTTCEEEEEECSSGGG----HHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHHcCCEEEEEecCChHH----HHHHHHhccCCeeEEEEe
Confidence 2356778888998876665443321 22223233 788887654
No 111
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=74.71 E-value=28 Score=33.89 Aligned_cols=111 Identities=15% Similarity=0.146 Sum_probs=70.8
Q ss_pred CCeEEEeCCCCC-----hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCH-----HHHHHHHH
Q 026235 50 NPKVVVTRERGK-----NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP-----EAGSVFLE 119 (241)
Q Consensus 50 g~~VLitR~~~~-----~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~-----~aV~~f~~ 119 (241)
..+|++...... ..-....|+..|++|+..+.... .+++.+...+ .+.|.|..+|- ..+..+.+
T Consensus 596 r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~-----~eeiv~aA~e-~~adiVglSsl~~~~~~~~~~vi~ 669 (727)
T 1req_A 596 RPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQT-----PEETARQAVE-ADVHVVGVSSLAGGHLTLVPALRK 669 (727)
T ss_dssp CCEEEEECBTTCCCCHHHHHHHHHHHHHTCEEEECCTTBC-----HHHHHHHHHH-TTCSEEEEEECSSCHHHHHHHHHH
T ss_pred CCEEEEEeCCcchhHHHHHHHHHHHHhCCeEEEeCCCCCC-----HHHHHHHHHH-cCCCEEEEeeecHhHHHHHHHHHH
Confidence 456777655432 34566688999999998665421 2333333322 67899998873 34566677
Q ss_pred HHHhcCCCCcEEEEeC---HHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhh
Q 026235 120 AWKEAGTPNVRIGVVG---AGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (241)
Q Consensus 120 ~l~~~~~~~~~i~aIG---~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~ 173 (241)
.+++.+.+++++++=| ..-.+.+++. |+...+.| ..+...++..+.+
T Consensus 670 ~L~~~G~~~i~VivGG~~p~~d~~~l~~~------GaD~~f~~-gt~~~e~a~~l~~ 719 (727)
T 1req_A 670 ELDKLGRPDILITVGGVIPEQDFDELRKD------GAVEIYTP-GTVIPESAISLVK 719 (727)
T ss_dssp HHHHTTCTTSEEEEEESCCGGGHHHHHHT------TEEEEECT-TCCHHHHHHHHHH
T ss_pred HHHhcCCCCCEEEEcCCCccccHHHHHhC------CCCEEEcC-CccHHHHHHHHHH
Confidence 7777787777777665 2234778888 99865544 4566666666543
No 112
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=74.55 E-value=21 Score=25.62 Aligned_cols=113 Identities=10% Similarity=0.094 Sum_probs=65.6
Q ss_pred CCCCCCCeEEEeCCCC-ChHHHHHHHHHCC-CcEEEeceEEEeeCCCchHHHHHHhcC-CCccEEEEe----CHHHHHHH
Q 026235 45 SASNSNPKVVVTRERG-KNGKLIKALAKHR-IDCLELPLIQHAQGPDTDRLSSVLNAD-TIFDWIIIT----SPEAGSVF 117 (241)
Q Consensus 45 ~~~l~g~~VLitR~~~-~~~~l~~~L~~~G-~~v~~~P~~~~~~~~~~~~l~~~l~~l-~~~d~IiFT----S~~aV~~f 117 (241)
.....+.+|||.-... ....+...|++.| +++.... ...+.+.... .. ..+|.|++- -.++.+.+
T Consensus 15 ~~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~-------~~~~~~~~~~-~~~~~~dlvi~D~~l~~~~g~~~~ 86 (146)
T 4dad_A 15 LYFQGMINILVASEDASRLAHLARLVGDAGRYRVTRTV-------GRAAQIVQRT-DGLDAFDILMIDGAALDTAELAAI 86 (146)
T ss_dssp CCCGGGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEEC-------CCHHHHTTCH-HHHTTCSEEEEECTTCCHHHHHHH
T ss_pred CCcCCCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeC-------CHHHHHHHHH-hcCCCCCEEEEeCCCCCccHHHHH
Confidence 3444568899987764 3567888899888 7665421 1122222222 22 578988874 33555443
Q ss_pred HHHHHhcCCCCcEEEEeCH-HHHHH---HHHhhhccCCCCceeecCCCCCHHHHHHHhhhC
Q 026235 118 LEAWKEAGTPNVRIGVVGA-GTASI---FEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (241)
Q Consensus 118 ~~~l~~~~~~~~~i~aIG~-~Ta~~---L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~ 174 (241)
..+.+.. ++++++.+.. ...+. +.+. |.. ++..+..+.+.|...|...
T Consensus 87 -~~l~~~~-~~~~ii~lt~~~~~~~~~~~~~~------ga~-~~l~Kp~~~~~L~~~i~~~ 138 (146)
T 4dad_A 87 -EKLSRLH-PGLTCLLVTTDASSQTLLDAMRA------GVR-DVLRWPLEPRALDDALKRA 138 (146)
T ss_dssp -HHHHHHC-TTCEEEEEESCCCHHHHHHHHTT------TEE-EEEESSCCHHHHHHHHHHH
T ss_pred -HHHHHhC-CCCcEEEEeCCCCHHHHHHHHHh------CCc-eeEcCCCCHHHHHHHHHHH
Confidence 3344432 4566666543 22222 3344 755 5777788999999888643
No 113
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=74.03 E-value=27 Score=26.57 Aligned_cols=110 Identities=18% Similarity=0.218 Sum_probs=65.8
Q ss_pred CCCCCeEEEeCCCC-ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEe----CHHHHHHHHHHH
Q 026235 47 SNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAW 121 (241)
Q Consensus 47 ~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFT----S~~aV~~f~~~l 121 (241)
++.+++|||.-... ....+...|++.|+++... .+..+..+.+ .-..+|.|+.- ..+|.+.+-. +
T Consensus 4 ~m~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~al~~~-~~~~~dlvl~D~~lp~~~g~~~~~~-l 73 (184)
T 3rqi_A 4 SMSDKNFLVIDDNEVFAGTLARGLERRGYAVRQA--------HNKDEALKLA-GAEKFEFITVXLHLGNDSGLSLIAP-L 73 (184)
T ss_dssp ---CCEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------CSHHHHHHHH-TTSCCSEEEECSEETTEESHHHHHH-H
T ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEe--------CCHHHHHHHH-hhCCCCEEEEeccCCCccHHHHHHH-H
Confidence 34568899997765 3566888899988765322 3334444445 33578988863 2345554433 3
Q ss_pred HhcCCCCcEEEEeCH-H---HHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhC
Q 026235 122 KEAGTPNVRIGVVGA-G---TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (241)
Q Consensus 122 ~~~~~~~~~i~aIG~-~---Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~ 174 (241)
.+. .++++++.+.. . ....+.+. |.. ++..+..+.+.|...+...
T Consensus 74 ~~~-~~~~~ii~lt~~~~~~~~~~a~~~------Ga~-~~l~KP~~~~~L~~~i~~~ 122 (184)
T 3rqi_A 74 CDL-QPDARILVLTGYASIATAVQAVKD------GAD-NYLAKPANVESILAALQTN 122 (184)
T ss_dssp HHH-CTTCEEEEEESSCCHHHHHHHHHH------TCS-EEEESSCCHHHHHHHTSTT
T ss_pred Hhc-CCCCCEEEEeCCCCHHHHHHHHHh------CHH-HheeCCCCHHHHHHHHHHH
Confidence 332 24566666543 2 23334456 875 5777889999999888653
No 114
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=73.90 E-value=6.9 Score=30.73 Aligned_cols=83 Identities=6% Similarity=-0.055 Sum_probs=49.5
Q ss_pred CeEEEeCCC----CChHHHHHHHHH---CCCcEEEeceEEEeeCCC--------chHHHHHHhcCCCccEEEEeCH----
Q 026235 51 PKVVVTRER----GKNGKLIKALAK---HRIDCLELPLIQHAQGPD--------TDRLSSVLNADTIFDWIIITSP---- 111 (241)
Q Consensus 51 ~~VLitR~~----~~~~~l~~~L~~---~G~~v~~~P~~~~~~~~~--------~~~l~~~l~~l~~~d~IiFTS~---- 111 (241)
++||+.-.. .....+++.+.+ .|+++..+.+.+. |.-+ .+.+....+.+..+|.|||.||
T Consensus 7 Mkilii~gS~r~~g~t~~la~~i~~~l~~g~~v~~~dl~~~-p~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~~sP~y~~ 85 (193)
T 1rtt_A 7 IKVLGISGSLRSGSYNSAALQEAIGLVPPGMSIELADISGI-PLYNEDVYALGFPPAVERFREQIRAADALLFATPEYNY 85 (193)
T ss_dssp CEEEEEESCCSTTCHHHHHHHHHHTTCCTTCEEEECCCTTC-CCCCHHHHTTCCCHHHHHHHHHHHHCSEEEEECCEETT
T ss_pred ceEEEEECCCCCCChHHHHHHHHHHhccCCCeEEEEeHHHC-CCCCccccccCCCHHHHHHHHHHHhCCEEEEEcccccc
Confidence 566665443 335566666544 2677777666552 1110 1334444555678999999995
Q ss_pred ---HHHHHHHHHHHhc---CCCCcEEEEe
Q 026235 112 ---EAGSVFLEAWKEA---GTPNVRIGVV 134 (241)
Q Consensus 112 ---~aV~~f~~~l~~~---~~~~~~i~aI 134 (241)
..++.|++.+... .+.+++++.+
T Consensus 86 ~~p~~lK~~iD~~~~~~~~~l~gK~~~~~ 114 (193)
T 1rtt_A 86 SMAGVLKNAIDWASRPPEQPFSGKPAAIL 114 (193)
T ss_dssp EECHHHHHHHHHHTCSSSCTTTTCEEEEE
T ss_pred CcCHHHHHHHHHhccccCcccCCCeEEEE
Confidence 6889999987642 2445555444
No 115
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*
Probab=73.60 E-value=16 Score=31.81 Aligned_cols=167 Identities=13% Similarity=0.119 Sum_probs=88.0
Q ss_pred CeEEEeCCCCChHHHHHHHHH-C-CCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHH-HHHHHHHHhcCCC
Q 026235 51 PKVVVTRERGKNGKLIKALAK-H-RIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG-SVFLEAWKEAGTP 127 (241)
Q Consensus 51 ~~VLitR~~~~~~~l~~~L~~-~-G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV-~~f~~~l~~~~~~ 127 (241)
++|+++..........+.|++ . |+++...+-. . .++ ..+.+.++|.++..+...+ +.+++.+.+.+
T Consensus 2 mkil~~~~~~~~~~~~~~l~~~~p~~~v~~~~~~----~--~~~---~~~~~~~~d~~i~~~~~~~~~~~l~~~~~~~-- 70 (333)
T 1j4a_A 2 TKIFAYAIREDEKPFLKEWEDAHKDVEVEYTDKL----L--TPE---TVALAKGADGVVVYQQLDYIAETLQALADNG-- 70 (333)
T ss_dssp CEEEECSCCGGGHHHHHHHHHTCTTSEEEECSSC----C--CTT---TGGGGTTCSEEEECCSSCBCHHHHHHHHHTT--
T ss_pred cEEEEEecCccCHHHHHHHHhhCCCcEEEECCCC----C--cHH---HHHHhcCCcEEEEcCCCCCCHHHHHhccccC--
Confidence 578887554444555566665 3 6666544321 1 111 2224578899887542111 23445554422
Q ss_pred CcEEEE---eCHH--HHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhh-------h---------------------C
Q 026235 128 NVRIGV---VGAG--TASIFEEVIQSSKCSLDVAFSPSKATGKILASELP-------K---------------------N 174 (241)
Q Consensus 128 ~~~i~a---IG~~--Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~-------~---------------------~ 174 (241)
+++++ +|-- -.+++++. |+.+.-.|. ++.+.++|... + .
T Consensus 71 -Lk~I~~~~~G~d~id~~~~~~~------gi~v~n~p~-~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~ 142 (333)
T 1j4a_A 71 -ITKMSLRNVGVDNIDMAKAKEL------GFQITNVPV-YSPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGR 142 (333)
T ss_dssp -CCEEEESSSCCTTBCHHHHHHT------TCEEECCCC-SCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTBCCCTTCCBC
T ss_pred -CeEEEECCcccccccHHHHHhC------CCEEEeCCC-CCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCCcccc
Confidence 33333 2311 23567788 998766654 55555544311 0 0
Q ss_pred CCCccEEEEEccCCCchhHHHHHHhCCCeeeEeeeeeeecCCC------ChHHHHHHcCCCCEEEEECCcc
Q 026235 175 GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHH------VDQTVLKQALSIPVVAVASPSA 239 (241)
Q Consensus 175 ~~~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~------~~~~~~~~l~~id~IvFtSps~ 239 (241)
...++++.++-...-...+.+.|+..|++|. +|.+.+... ....+.+.+...|+|+..-|.+
T Consensus 143 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~---~~d~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~p~~ 210 (333)
T 1j4a_A 143 EVRDQVVGVVGTGHIGQVFMQIMEGFGAKVI---TYDIFRNPELEKKGYYVDSLDDLYKQADVISLHVPDV 210 (333)
T ss_dssp CGGGSEEEEECCSHHHHHHHHHHHHTTCEEE---EECSSCCHHHHHTTCBCSCHHHHHHHCSEEEECSCCC
T ss_pred cCCCCEEEEEccCHHHHHHHHHHHHCCCEEE---EECCCcchhHHhhCeecCCHHHHHhhCCEEEEcCCCc
Confidence 1246788888555455678889999997654 454432210 0001222235789999887743
No 116
>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}
Probab=73.50 E-value=1.8 Score=34.87 Aligned_cols=65 Identities=15% Similarity=0.111 Sum_probs=42.9
Q ss_pred CCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCH
Q 026235 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP 111 (241)
Q Consensus 47 ~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~ 111 (241)
.+.||++|||..... ...+++.|.+.|++|...---....+.+.+.+++.++.++..|.+|....
T Consensus 3 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~D~~~~~~v~~~~~~~g~id~lv~nAg 68 (223)
T 3uce_A 3 GSDKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQTGLDISDEKSVYHYFETIGAFDHLIVTAG 68 (223)
T ss_dssp --CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGGTCCTTCHHHHHHHHHHHCSEEEEEECCC
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCcccCCCCHHHHHHHHHHhCCCCEEEECCC
Confidence 467899999988754 67889999999988765432111123345566666666678888886543
No 117
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=73.34 E-value=22 Score=25.30 Aligned_cols=110 Identities=10% Similarity=0.138 Sum_probs=64.0
Q ss_pred CCCCeEEEeCCCC-ChHHHHHHHHHCCC--cEEEeceEEEeeCCCchHHHHHHhcC---------CCccEEEEe----CH
Q 026235 48 NSNPKVVVTRERG-KNGKLIKALAKHRI--DCLELPLIQHAQGPDTDRLSSVLNAD---------TIFDWIIIT----SP 111 (241)
Q Consensus 48 l~g~~VLitR~~~-~~~~l~~~L~~~G~--~v~~~P~~~~~~~~~~~~l~~~l~~l---------~~~d~IiFT----S~ 111 (241)
..+++||+.-... ....+...|++.|+ .+... .+..+..+.+... ..+|.|+.- ..
T Consensus 4 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~--------~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~ 75 (149)
T 1k66_A 4 NATQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRC--------ITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGT 75 (149)
T ss_dssp CTTSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEE--------CSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSS
T ss_pred CCCccEEEEECCHHHHHHHHHHHHHcCCCceEEEE--------CCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCC
Confidence 4567899887764 35668888999886 43322 3334444455331 578888864 22
Q ss_pred HHHHHHHHHHHhcC-CCCcEEEEeC-HH---HHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhh
Q 026235 112 EAGSVFLEAWKEAG-TPNVRIGVVG-AG---TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (241)
Q Consensus 112 ~aV~~f~~~l~~~~-~~~~~i~aIG-~~---Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~ 173 (241)
++.+ +...+.+.. .++++++.+. .. ....+.+. |.. ++.++..+.+.|.+.+..
T Consensus 76 ~g~~-~~~~l~~~~~~~~~~ii~~t~~~~~~~~~~~~~~------g~~-~~l~kP~~~~~l~~~i~~ 134 (149)
T 1k66_A 76 DGRE-VLQEIKQDEVLKKIPVVIMTTSSNPKDIEICYSY------SIS-SYIVKPLEIDRLTETVQT 134 (149)
T ss_dssp CHHH-HHHHHTTSTTGGGSCEEEEESCCCHHHHHHHHHT------TCS-EEEECCSSHHHHHHHHHH
T ss_pred CHHH-HHHHHHhCcccCCCeEEEEeCCCCHHHHHHHHHC------CCC-EEEeCCCCHHHHHHHHHH
Confidence 4443 334444332 1456666553 22 23333445 766 467778899999887754
No 118
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}
Probab=73.01 E-value=24 Score=30.63 Aligned_cols=169 Identities=12% Similarity=0.097 Sum_probs=89.0
Q ss_pred CCCCCeEEEeCCCCChHHHHHHH-HHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcC
Q 026235 47 SNSNPKVVVTRERGKNGKLIKAL-AKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAG 125 (241)
Q Consensus 47 ~l~g~~VLitR~~~~~~~l~~~L-~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~ 125 (241)
++.+++||++.+. .+...+.| ++...++.. ....+.+++.+ .+.++|.++- .+.-.. +.+..
T Consensus 2 ~~~~mkili~~~~--~~~~~~~L~~~~~p~~~~------~~~~~~~~~~~---~~~~ad~li~-~~~~~~---~~l~~-- 64 (324)
T 3hg7_A 2 SLSQRTLLLLSQD--NAHYERLLKAAHLPHLRI------LRADNQSDAEK---LIGEAHILMA-EPARAK---PLLAK-- 64 (324)
T ss_dssp --CCEEEEEESTT--HHHHHHHHHHSCCTTEEE------EECSSHHHHHH---HGGGCSEEEE-CHHHHG---GGGGG--
T ss_pred CccccEEEEecCC--CHHHHHHHhhccCCCeEE------EeCCChhHHHH---HhCCCEEEEE-CCCCCH---HHHhh--
Confidence 4556899999776 57788889 665544432 22223333333 3467888774 332111 22221
Q ss_pred CCCcEEEE-eCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhh-------h-------------------CCCCc
Q 026235 126 TPNVRIGV-VGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP-------K-------------------NGKKK 178 (241)
Q Consensus 126 ~~~~~i~a-IG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~-------~-------------------~~~~~ 178 (241)
.+++++++ .|..+-....+.+ .-|+.+.-.| ...++.++|... + ....|
T Consensus 65 ~~~Lk~I~~~~~G~d~id~~~~---~~gI~v~n~~-g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~l~g 140 (324)
T 3hg7_A 65 ANKLSWFQSTYAGVDVLLDARC---RRDYQLTNVR-GIFGPLMSEYVFGHLLSLMRQLPLYREQQKQRLWQSHPYQGLKG 140 (324)
T ss_dssp CTTCCEEEESSSCCGGGSCTTS---CCSSEEECCC-SCCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCCCCSTT
T ss_pred CCCceEEEECCCCCCccChHHH---hCCEEEEECC-CcChHHHHHHHHHHHHHHHhChHHHHHHHhhCCCcCCCCccccc
Confidence 24555544 3333222211111 1177665454 455665554321 0 01346
Q ss_pred cEEEEEccCCCchhHHHHHHhCCCeeeEeeeeeeecCCCC-------hHHHHHHcCCCCEEEEECCcc
Q 026235 179 CTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHV-------DQTVLKQALSIPVVAVASPSA 239 (241)
Q Consensus 179 ~~iL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~-------~~~~~~~l~~id~IvFtSps~ 239 (241)
+++.++.-..-...+...|+..|++|. +|.+.+.... ...+.+.+.+.|+|++.-|.+
T Consensus 141 ~tvGIIGlG~IG~~vA~~l~~~G~~V~---~~dr~~~~~~~~~~~~~~~~l~ell~~aDvV~l~lPlt 205 (324)
T 3hg7_A 141 RTLLILGTGSIGQHIAHTGKHFGMKVL---GVSRSGRERAGFDQVYQLPALNKMLAQADVIVSVLPAT 205 (324)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEE---EECSSCCCCTTCSEEECGGGHHHHHHTCSEEEECCCCC
T ss_pred ceEEEEEECHHHHHHHHHHHhCCCEEE---EEcCChHHhhhhhcccccCCHHHHHhhCCEEEEeCCCC
Confidence 788888655556678899999997654 4544332211 122333347899999987743
No 119
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=72.93 E-value=1.2 Score=34.84 Aligned_cols=81 Identities=19% Similarity=0.234 Sum_probs=49.6
Q ss_pred hHHHHHHHHHCCCcEEEeceEEEeeC---CCc--hHHHHHHhcCCCccEEEEeCHHH-HHHHHHHHHhcCCC-CcEEEEe
Q 026235 62 NGKLIKALAKHRIDCLELPLIQHAQG---PDT--DRLSSVLNADTIFDWIIITSPEA-GSVFLEAWKEAGTP-NVRIGVV 134 (241)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~~~~---~~~--~~l~~~l~~l~~~d~IiFTS~~a-V~~f~~~l~~~~~~-~~~i~aI 134 (241)
...+.+.|+..|+++...|+.+.... .+. .-..+++...+.+|.+|+.|.-+ ..-..+.+.+ . ++++..+
T Consensus 63 ~~~~~~~L~~~g~~v~~~p~~~~~~~~~k~~~Dv~laiD~~~~a~~~d~~vLvSgD~DF~plv~~lr~---~~G~~V~v~ 139 (165)
T 2qip_A 63 QRQFHHILRGVGFEVMLKPYIQRRDGSAKGDWDVGITLDAIEIAPDVDRVILVSGDGDFSLLVERIQQ---RYNKKVTVY 139 (165)
T ss_dssp HHHHHHHHHHHTCEEEECCCCCCSSCCCSCCCHHHHHHHHHHHGGGCSEEEEECCCGGGHHHHHHHHH---HHCCEEEEE
T ss_pred HHHHHHHHHHCCcEEEEEeeeeccCCccCCCccHHHHHHHHHhhccCCEEEEEECChhHHHHHHHHHH---HcCcEEEEE
Confidence 45688899999999999888753211 111 11223333346789888888766 2222333433 2 4777777
Q ss_pred CH--HHHHHHHHh
Q 026235 135 GA--GTASIFEEV 145 (241)
Q Consensus 135 G~--~Ta~~L~~~ 145 (241)
|. .|+..|++.
T Consensus 140 g~~~~~s~~L~~~ 152 (165)
T 2qip_A 140 GVPRLTSQTLIDC 152 (165)
T ss_dssp ECGGGSCHHHHHH
T ss_pred eCCCcChHHHHHh
Confidence 74 367778776
No 120
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=72.75 E-value=24 Score=25.53 Aligned_cols=113 Identities=16% Similarity=0.105 Sum_probs=65.2
Q ss_pred CCCCCeEEEeCCCC-ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeC----HHHHHHHHHHH
Q 026235 47 SNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVFLEAW 121 (241)
Q Consensus 47 ~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS----~~aV~~f~~~l 121 (241)
....++||+.-... ....+...|+..|. .+.+....+..+..+.+. -..+|.|++-- .++.+. +..+
T Consensus 17 ~~~m~~iLivdd~~~~~~~l~~~L~~~~~------~~~v~~~~~~~~al~~l~-~~~~dlii~D~~l~~~~g~~~-~~~l 88 (150)
T 4e7p_A 17 RGSHMKVLVAEDQSMLRDAMCQLLTLQPD------VESVLQAKNGQEAIQLLE-KESVDIAILDVEMPVKTGLEV-LEWI 88 (150)
T ss_dssp ---CEEEEEECSCHHHHHHHHHHHHTSTT------EEEEEEESSHHHHHHHHT-TSCCSEEEECSSCSSSCHHHH-HHHH
T ss_pred CCCccEEEEEcCCHHHHHHHHHHHHhCCC------cEEEEEECCHHHHHHHhh-ccCCCEEEEeCCCCCCcHHHH-HHHH
Confidence 33456899887764 35567778887762 122222234444455553 36789888742 234443 3444
Q ss_pred HhcCCCCcEEEEeCH-H---HHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCC
Q 026235 122 KEAGTPNVRIGVVGA-G---TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG 175 (241)
Q Consensus 122 ~~~~~~~~~i~aIG~-~---Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~ 175 (241)
.+. .++++++.+.. . ....+.+. |.. ++..+..+.+.|.+.|....
T Consensus 89 ~~~-~~~~~ii~ls~~~~~~~~~~~~~~------g~~-~~l~Kp~~~~~l~~~i~~~~ 138 (150)
T 4e7p_A 89 RSE-KLETKVVVVTTFKRAGYFERAVKA------GVD-AYVLKERSIADLMQTLHTVL 138 (150)
T ss_dssp HHT-TCSCEEEEEESCCCHHHHHHHHHT------TCS-EEEETTSCHHHHHHHHHHHH
T ss_pred HHh-CCCCeEEEEeCCCCHHHHHHHHHC------CCc-EEEecCCCHHHHHHHHHHHH
Confidence 443 34566666543 2 23334455 876 57778889999998887654
No 121
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=72.02 E-value=33 Score=26.76 Aligned_cols=114 Identities=14% Similarity=0.096 Sum_probs=63.4
Q ss_pred ccCCCCCCCeEEEeCCCC-ChHHHHHHHHHCCC-cEEEeceEEEeeCCCchHHHHHHhcC------------CCccEEEE
Q 026235 43 SASASNSNPKVVVTRERG-KNGKLIKALAKHRI-DCLELPLIQHAQGPDTDRLSSVLNAD------------TIFDWIII 108 (241)
Q Consensus 43 ~~~~~l~g~~VLitR~~~-~~~~l~~~L~~~G~-~v~~~P~~~~~~~~~~~~l~~~l~~l------------~~~d~IiF 108 (241)
....+..+++|||.-... ....+...|++.|+ .+... .+..+..+.+... ..+|.|+.
T Consensus 54 ~~~~~~~~~~ILiVdDd~~~~~~l~~~L~~~g~~~v~~a--------~~~~eal~~l~~~~~~~~~~~~~~~~~~dlill 125 (206)
T 3mm4_A 54 SDDEFLRGKRVLVVDDNFISRKVATGKLKKMGVSEVEQC--------DSGKEALRLVTEGLTQREEQGSVDKLPFDYIFM 125 (206)
T ss_dssp -CTTTTTTCEEEEECSCHHHHHHHHHHHHHTTCSEEEEE--------SSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEE
T ss_pred CcccccCCCEEEEEeCCHHHHHHHHHHHHHcCCCeeeee--------CCHHHHHHHHHhhcccccccccccCCCCCEEEE
Confidence 334557788999998765 35668888999997 44432 2333333333221 36898887
Q ss_pred e----CHHHHHHHHHHHHhc---CCCCcEEEEeCHH-----HHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhC
Q 026235 109 T----SPEAGSVFLEAWKEA---GTPNVRIGVVGAG-----TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (241)
Q Consensus 109 T----S~~aV~~f~~~l~~~---~~~~~~i~aIG~~-----Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~ 174 (241)
= -.++.+.+-. +.+. ...+++++.+... ....+.+. |... +..+..+ .|.+.|...
T Consensus 126 D~~lp~~~G~el~~~-lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~~~------Ga~~-~l~KP~~--~L~~~i~~~ 193 (206)
T 3mm4_A 126 DCQMPEMDGYEATRE-IRKVEKSYGVRTPIIAVSGHDPGSEEARETIQA------GMDA-FLDKSLN--QLANVIREI 193 (206)
T ss_dssp ESCCSSSCHHHHHHH-HHHHHHTTTCCCCEEEEESSCCCHHHHHHHHHH------TCSE-EEETTCT--THHHHHHHH
T ss_pred cCCCCCCCHHHHHHH-HHhhhhhcCCCCcEEEEECCCCcHHHHHHHHhC------CCCE-EEcCcHH--HHHHHHHHH
Confidence 3 2345554433 3332 1245566554332 23334456 8763 5555555 677777554
No 122
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=71.92 E-value=13 Score=30.20 Aligned_cols=115 Identities=14% Similarity=0.110 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcC--CCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD--TIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l--~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~ 140 (241)
..+.+.++++|+++.... ...+.+...+.++.+ ..+|+||+.+... ....+.+.+ .+++++++|..
T Consensus 27 ~gi~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~-~~~~~~l~~---~~iPvV~i~~~--- 94 (276)
T 3jy6_A 27 KGISSILESRGYIGVLFD-----ANADIEREKTLLRAIGSRGFDGLILQSFSN-PQTVQEILH---QQMPVVSVDRE--- 94 (276)
T ss_dssp HHHHHHHHTTTCEEEEEE-----CTTCHHHHHHHHHHHHTTTCSEEEEESSCC-HHHHHHHHT---TSSCEEEESCC---
T ss_pred HHHHHHHHHCCCEEEEEe-----CCCCHHHHHHHHHHHHhCCCCEEEEecCCc-HHHHHHHHH---CCCCEEEEecc---
Q ss_pred HHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEccCCC-chhHHHHHH
Q 026235 141 IFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-SNEIEEGLS 198 (241)
Q Consensus 141 ~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~~~~~~iL~~~g~~~-~~~L~~~L~ 198 (241)
.... ++.....-....+..+++.|.+... ++|.++.+... .....+.++
T Consensus 95 -~~~~------~~~~V~~D~~~~g~~a~~~L~~~G~--~~I~~i~~~~~~~~~~~~R~~ 144 (276)
T 3jy6_A 95 -MDAC------PWPQVVTDNFEAAKAATTAFRQQGY--QHVVVLTSELELSRTRQERYR 144 (276)
T ss_dssp -CTTC------SSCEEECCHHHHHHHHHHHHHTTTC--CEEEEEEECSTTCHHHHHHHH
T ss_pred -cCCC------CCCEEEEChHHHHHHHHHHHHHcCC--CeEEEEecCCCCCchHHHHHH
No 123
>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*
Probab=71.61 E-value=7 Score=34.43 Aligned_cols=170 Identities=11% Similarity=-0.008 Sum_probs=89.5
Q ss_pred CeEEEeCCCCChHH-HHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHH-HH-HHHHHHhcCCC
Q 026235 51 PKVVVTRERGKNGK-LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG-SV-FLEAWKEAGTP 127 (241)
Q Consensus 51 ~~VLitR~~~~~~~-l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV-~~-f~~~l~~~~~~ 127 (241)
++|+++...+...+ +.+.+++.|+++...+-. .. + +.++.+.++|.|+..+..-+ +. +++.+...+
T Consensus 2 mki~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~--~---~~~~~~~~~d~li~~~~~~~~~~~~l~~~~~~~-- 70 (343)
T 2yq5_A 2 TKIAMYNVSPIEVPYIEDWAKKNDVEIKTTDQA----LT--S---ATVDLAEGCSSVSLKPLGPVDEEVVYQKLSEYG-- 70 (343)
T ss_dssp CEEEEESCCGGGHHHHHHHHHHHTCEEEEESSC----CS--T---TGGGGGTTCSEEEECCSSCBCCHHHHHHHHHTT--
T ss_pred ceEEEEecCcccHHHHHHHHHhCCeEEEECCCC----CC--H---HHHHHhcCCcEEEEcCCCCcCHHHHHHhccccC--
Confidence 68999876554444 455566789888766531 11 1 12345688999987653222 22 555554322
Q ss_pred CcEEEE-eCHHH----HHHHHHhhhccCCCCceeecCCCCCHHHHHHHhh-------------------h----C-----
Q 026235 128 NVRIGV-VGAGT----ASIFEEVIQSSKCSLDVAFSPSKATGKILASELP-------------------K----N----- 174 (241)
Q Consensus 128 ~~~i~a-IG~~T----a~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~-------------------~----~----- 174 (241)
+++++ .|-.+ .+++++. |+.+.-.| .++++.++|... + +
T Consensus 71 -Lk~I~~~~~G~d~id~~~~~~~------gI~v~n~p-~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~g~~~w~~~~~ 142 (343)
T 2yq5_A 71 -VKCIGLRIVGFNTINFDWTKKY------NLLVTNVP-VYSPRAIAEMTVTQAMYLLRKIGEFRYRMDHDHDFTWPSNLI 142 (343)
T ss_dssp -CCEEEESSSCCTTBCSSTTCC--------CEEECCS-CSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCCCCCCGGGC
T ss_pred -ceEEEECceeecccchhHHHhC------CEEEEECC-CCCcHHHHHHHHHHHHHHHhchHHHHHHHHHcCCcccccCCC
Confidence 22222 22211 1334555 77664444 344444443210 1 0
Q ss_pred --CCCccEEEEEccCCCchhHHHHHHhCCCeeeEeeeeeeecCCCC--hHHHHHHcCCCCEEEEECCcc
Q 026235 175 --GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHV--DQTVLKQALSIPVVAVASPSA 239 (241)
Q Consensus 175 --~~~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~--~~~~~~~l~~id~IvFtSps~ 239 (241)
...|+++.++.-..-...+...|+..|++|..+..|........ ...+.+.+.+.|+|+..-|.+
T Consensus 143 ~~~l~gktvgIiGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~l~~Plt 211 (343)
T 2yq5_A 143 SNEIYNLTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNPEFEPFLTYTDFDTVLKEADIVSLHTPLF 211 (343)
T ss_dssp BCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCGGGTTTCEECCHHHHHHHCSEEEECCCCC
T ss_pred ccccCCCeEEEEecCHHHHHHHHHHhhCCCEEEEECCChhhhhhccccccCHHHHHhcCCEEEEcCCCC
Confidence 12467888885555556788999999987655544432211100 011222336789999988753
No 124
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}
Probab=71.44 E-value=13 Score=32.46 Aligned_cols=163 Identities=12% Similarity=0.083 Sum_probs=90.0
Q ss_pred CeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHH-HHHHHHHHhcCCCCc
Q 026235 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG-SVFLEAWKEAGTPNV 129 (241)
Q Consensus 51 ~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV-~~f~~~l~~~~~~~~ 129 (241)
++|+++.+. .+...+.|++.|+++...+ ..+.+++.+ .+.++|.++..+...+ +.+++.+ +++
T Consensus 27 ~~vli~~~~--~~~~~~~l~~~~~~v~~~~------~~~~~~~~~---~~~~~d~li~~~~~~~~~~~l~~~-----~~L 90 (335)
T 2g76_A 27 RKVLISDSL--DPCCRKILQDGGLQVVEKQ------NLSKEELIA---ELQDCEGLIVRSATKVTADVINAA-----EKL 90 (335)
T ss_dssp CEEEECSCC--CHHHHHHHHHHTCEEEECC------SCCHHHHHH---HGGGCSEEEECSSSCBCHHHHHHC-----SSC
T ss_pred eEEEEcCCC--CHHHHHHHHhCCCEEEECC------CCCHHHHHH---HhcCceEEEEcCCCCCCHHHHhhC-----CCC
Confidence 578888764 3556778888787765432 112334433 3467899887543211 1223322 345
Q ss_pred EEEE---eCHH--HHHHHHHhhhccCCCCceeecCCCCCHHHHHHHh--------hh--------------------CCC
Q 026235 130 RIGV---VGAG--TASIFEEVIQSSKCSLDVAFSPSKATGKILASEL--------PK--------------------NGK 176 (241)
Q Consensus 130 ~i~a---IG~~--Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l--------~~--------------------~~~ 176 (241)
++++ +|-- --+++++. |+.+.-.| ...++.++|.. .+ ...
T Consensus 91 k~I~~~~~G~d~id~~~~~~~------gI~v~n~p-~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~l 163 (335)
T 2g76_A 91 QVVGRAGTGVDNVDLEAATRK------GILVMNTP-NGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTEL 163 (335)
T ss_dssp CEEEESSSSCTTBCHHHHHHH------TCEEECCS-STTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCTGGGCBCCC
T ss_pred cEEEECCCCcchhChHHHHhC------CeEEEECC-CccchHHHHHHHHHHHHHHhchHHHHHHHHcCCCCccCCCCcCC
Confidence 5444 3321 23567788 99876555 35555544431 00 113
Q ss_pred CccEEEEEccCCCchhHHHHHHhCCCeeeEeeeeeeecCCCC-------hHHHHHHcCCCCEEEEECCcc
Q 026235 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHV-------DQTVLKQALSIPVVAVASPSA 239 (241)
Q Consensus 177 ~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~-------~~~~~~~l~~id~IvFtSps~ 239 (241)
.++++.++.-..-...+...|+..|.+|. +|...+.... ...+.+.+.+.|+|+..-|.+
T Consensus 164 ~g~tvgIIGlG~IG~~vA~~l~~~G~~V~---~~d~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~P~t 230 (335)
T 2g76_A 164 NGKTLGILGLGRIGREVATRMQSFGMKTI---GYDPIISPEVSASFGVQQLPLEEIWPLCDFITVHTPLL 230 (335)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTTCEEE---EECSSSCHHHHHHTTCEECCHHHHGGGCSEEEECCCCC
T ss_pred CcCEEEEEeECHHHHHHHHHHHHCCCEEE---EECCCcchhhhhhcCceeCCHHHHHhcCCEEEEecCCC
Confidence 46788888554455678889998887654 5544322100 001223346889999987754
No 125
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=71.43 E-value=24 Score=24.91 Aligned_cols=109 Identities=11% Similarity=0.076 Sum_probs=63.5
Q ss_pred CCCCCeEEEeCCCC-ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEe-----CHHHHHHHHHH
Q 026235 47 SNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT-----SPEAGSVFLEA 120 (241)
Q Consensus 47 ~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFT-----S~~aV~~f~~~ 120 (241)
+..+++||+..... ....+...|++.|+++... ..+..+..+.+.. ..+|.|++- ..++.+. ...
T Consensus 6 ~~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~-------~~~~~~a~~~~~~-~~~dlii~d~~~~~~~~g~~~-~~~ 76 (140)
T 3cg0_A 6 SDDLPGVLIVEDGRLAAATLRIQLESLGYDVLGV-------FDNGEEAVRCAPD-LRPDIALVDIMLCGALDGVET-AAR 76 (140)
T ss_dssp --CCCEEEEECCBHHHHHHHHHHHHHHTCEEEEE-------ESSHHHHHHHHHH-HCCSEEEEESSCCSSSCHHHH-HHH
T ss_pred CCCCceEEEEECCHHHHHHHHHHHHHCCCeeEEE-------ECCHHHHHHHHHh-CCCCEEEEecCCCCCCCHHHH-HHH
Confidence 34568899887764 3566888888888776421 1233333344432 468998874 2455543 444
Q ss_pred HHhcCCCCcEEEEeCH-HHHH---HHHHhhhccCCCCceeecCCCCCHHHHHHHhhh
Q 026235 121 WKEAGTPNVRIGVVGA-GTAS---IFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (241)
Q Consensus 121 l~~~~~~~~~i~aIG~-~Ta~---~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~ 173 (241)
+.+. .+++++.+.. ...+ .+.+. |.. ++..+..+.+.|.+.|..
T Consensus 77 l~~~--~~~~ii~ls~~~~~~~~~~~~~~------g~~-~~l~kp~~~~~l~~~i~~ 124 (140)
T 3cg0_A 77 LAAG--CNLPIIFITSSQDVETFQRAKRV------NPF-GYLAKPVAADTLHRSIEM 124 (140)
T ss_dssp HHHH--SCCCEEEEECCCCHHHHHHHHTT------CCS-EEEEESCCHHHHHHHHHH
T ss_pred HHhC--CCCCEEEEecCCCHHHHHHHHhc------CCC-EEEeCCCCHHHHHHHHHH
Confidence 4443 4566665532 2222 33344 765 466677888999888764
No 126
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=71.32 E-value=28 Score=25.55 Aligned_cols=113 Identities=9% Similarity=0.035 Sum_probs=66.1
Q ss_pred CCCCCeEEEeCCCC-ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCC-CccEEEEe----CHHHHHHHHHH
Q 026235 47 SNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT-IFDWIIIT----SPEAGSVFLEA 120 (241)
Q Consensus 47 ~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~-~~d~IiFT----S~~aV~~f~~~ 120 (241)
.....+|||.-... ....+...|++.|+++.. ...+..+..+.+.... .+|.|++- ..++.+. +..
T Consensus 33 ~~~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~-------~~~~~~~al~~l~~~~~~~dliilD~~l~~~~g~~~-~~~ 104 (157)
T 3hzh_A 33 TGIPFNVLIVDDSVFTVKQLTQIFTSEGFNIID-------TAADGEEAVIKYKNHYPNIDIVTLXITMPKMDGITC-LSN 104 (157)
T ss_dssp TTEECEEEEECSCHHHHHHHHHHHHHTTCEEEE-------EESSHHHHHHHHHHHGGGCCEEEECSSCSSSCHHHH-HHH
T ss_pred CCCceEEEEEeCCHHHHHHHHHHHHhCCCeEEE-------EECCHHHHHHHHHhcCCCCCEEEEeccCCCccHHHH-HHH
Confidence 33456899987764 356788889999977641 1123333344443321 67888874 2244443 333
Q ss_pred HHhcCCCCcEEEEeCH----HHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCC
Q 026235 121 WKEAGTPNVRIGVVGA----GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG 175 (241)
Q Consensus 121 l~~~~~~~~~i~aIG~----~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~ 175 (241)
+.+.. ++++++++.. .....+.+. |.. ++..+..+.+.|.+.|....
T Consensus 105 lr~~~-~~~~ii~ls~~~~~~~~~~~~~~------g~~-~~l~KP~~~~~l~~~i~~~l 155 (157)
T 3hzh_A 105 IMEFD-KNARVIMISALGKEQLVKDCLIK------GAK-TFIVKPLDRAKVLQRVMSVF 155 (157)
T ss_dssp HHHHC-TTCCEEEEESCCCHHHHHHHHHT------TCS-EEEESSCCHHHHHHHHHHTT
T ss_pred HHhhC-CCCcEEEEeccCcHHHHHHHHHc------CCC-EEEeCCCCHHHHHHHHHHHh
Confidence 44433 4555655442 333344555 866 46777889999998887653
No 127
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=71.24 E-value=4.7 Score=30.14 Aligned_cols=63 Identities=11% Similarity=0.140 Sum_probs=37.5
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCC-CccEEEEeCH----------HHHHHHHHHHHhcCCCCcEE
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT-IFDWIIITSP----------EAGSVFLEAWKEAGTPNVRI 131 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~-~~d~IiFTS~----------~aV~~f~~~l~~~~~~~~~i 131 (241)
+.+++.|++.|+++..+++-+.. ..++. ++|.|||-|| ..++.|++.+....+.+.++
T Consensus 20 ~~ia~~l~~~g~~v~~~~~~~~~-----------~~~l~~~~d~ii~g~pty~~~~G~~p~~~~~fl~~l~~~~l~~k~~ 88 (148)
T 3f6r_A 20 QKLEELIAAGGHEVTLLNAADAS-----------AENLADGYDAVLFGCSAWGMEDLEMQDDFLSLFEEFDRIGLAGRKV 88 (148)
T ss_dssp HHHHHHHHTTTCEEEEEETTTBC-----------CTTTTTTCSEEEEEECEECSSSCEECHHHHHHHTTGGGTCCTTCEE
T ss_pred HHHHHHHHhCCCeEEEEehhhCC-----------HhHhcccCCEEEEEecccCCCCCCCcHHHHHHHHHhhccCCCCCEE
Confidence 33444556678776654332221 11345 8899888774 25677777665545667777
Q ss_pred EEeCH
Q 026235 132 GVVGA 136 (241)
Q Consensus 132 ~aIG~ 136 (241)
+++|-
T Consensus 89 ~vfg~ 93 (148)
T 3f6r_A 89 AAFAS 93 (148)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 77753
No 128
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=70.79 E-value=4.4 Score=32.52 Aligned_cols=59 Identities=7% Similarity=0.080 Sum_probs=36.2
Q ss_pred EEEEEccCCCc---------hhHHHHHHhC--CCeeeEeeeeeeecCCCC-------------------------hHHHH
Q 026235 180 TVLYPASAKAS---------NEIEEGLSNR--GFEVVRLNTYTTEPVHHV-------------------------DQTVL 223 (241)
Q Consensus 180 ~iL~~~g~~~~---------~~L~~~L~~~--G~~V~~~~vY~~~~~~~~-------------------------~~~~~ 223 (241)
+||++.|.-.. +.+.+.|++. |.+|..+.+|+...+... ..++.
T Consensus 3 kiLii~gSpr~~~s~t~~l~~~~~~~~~~~~~g~~v~~~dL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (212)
T 3r6w_A 3 RILAVHASPRGERSQSRRLAEVFLAAYREAHPQARVARREVGRVPLPAVTEAFVAAAFHPQPEQRSLAMQADLALSDQLV 82 (212)
T ss_dssp CEEEEECCSCSTTCHHHHHHHHHHHHHHHHCTTCCEEEEESSSSCCCCCCHHHHHHHTCSSGGGCCHHHHHHHHHHHHHH
T ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcCCHHHHHHhhcCCcccCCHHHHHHHHHHHHHH
Confidence 46666555322 1456677766 889999999876322110 11223
Q ss_pred HHcCCCCEEEEECCc
Q 026235 224 KQALSIPVVAVASPS 238 (241)
Q Consensus 224 ~~l~~id~IvFtSps 238 (241)
+++...|+|||.||.
T Consensus 83 ~~l~~AD~iV~~~P~ 97 (212)
T 3r6w_A 83 GELFDSDLLVISTPM 97 (212)
T ss_dssp HHHHHCSEEEEEEEC
T ss_pred HHHHhCCEEEEEcCc
Confidence 345689999999984
No 129
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=70.52 E-value=20 Score=32.22 Aligned_cols=103 Identities=11% Similarity=0.032 Sum_probs=62.7
Q ss_pred CCeEEEeCCCCChHHHHHHHHHCCCcEEEece------------EEEeeCC-CchHHHHHHhcCCCccEEEEeCHHHHHH
Q 026235 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPL------------IQHAQGP-DTDRLSSVLNADTIFDWIIITSPEAGSV 116 (241)
Q Consensus 50 g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~------------~~~~~~~-~~~~l~~~l~~l~~~d~IiFTS~~aV~~ 116 (241)
+++|+|..-..-+..+.+.|.+.|.++..+-. +.+...+ ...++.... .+...|.||.+.++...+
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L~~a-gi~~A~~viv~~~~~~~n 82 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESA-GAAKAEVLINAIDDPQTN 82 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHHHHHT-TTTTCSEEEECCSSHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHHHhc-CCCccCEEEECCCChHHH
Confidence 46688887766678888899888887765531 1111111 112222222 457899999988765544
Q ss_pred HH--HHHHhcCCCCcEEEE--eCHHHHHHHHHhhhccCCCCceeecCC
Q 026235 117 FL--EAWKEAGTPNVRIGV--VGAGTASIFEEVIQSSKCSLDVAFSPS 160 (241)
Q Consensus 117 f~--~~l~~~~~~~~~i~a--IG~~Ta~~L~~~~~~~~~Gi~~~~~p~ 160 (241)
.. ..+++.+ +++++++ -.+.-...|++. |....+.|.
T Consensus 83 ~~i~~~ar~~~-p~~~Iiara~~~~~~~~L~~~------Gad~Vi~~~ 123 (413)
T 3l9w_A 83 LQLTEMVKEHF-PHLQIIARARDVDHYIRLRQA------GVEKPERET 123 (413)
T ss_dssp HHHHHHHHHHC-TTCEEEEEESSHHHHHHHHHT------TCSSCEETT
T ss_pred HHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHC------CCCEEECcc
Confidence 33 3333333 4455655 477788889998 988655443
No 130
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=70.39 E-value=5.8 Score=32.54 Aligned_cols=70 Identities=16% Similarity=0.064 Sum_probs=41.6
Q ss_pred HHHHHHHC-CCcEEEeceEEEeeCC--C-------------c--hHHHHHHhcCCCccEEEEeCH-------HHHHHHHH
Q 026235 65 LIKALAKH-RIDCLELPLIQHAQGP--D-------------T--DRLSSVLNADTIFDWIIITSP-------EAGSVFLE 119 (241)
Q Consensus 65 l~~~L~~~-G~~v~~~P~~~~~~~~--~-------------~--~~l~~~l~~l~~~d~IiFTS~-------~aV~~f~~ 119 (241)
+.+.+++. |+++..+.+.+....+ . . +.+...++.+..+|.|||.|| ..++.|++
T Consensus 24 i~~~l~~~~g~~v~~~dl~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~AD~iI~~sP~y~~~~p~~lK~~iD 103 (242)
T 1sqs_A 24 LSSIISSRNNVDISFRTPFNSELEISNSDSEELFKKGIDRQSNADDGGVIKKELLESDIIIISSPVYLQNVSVDTKNFIE 103 (242)
T ss_dssp HHHHHHHHSCCEEEEECTTTCCCCCCCCCHHHHHHHCCCSSTTTSTHHHHHHHHHHCSEEEEEEEECSSSCCHHHHHHHH
T ss_pred HHHHHHHhcCCeEEEEEcccCCCCCCCchHHhhccCCCCccchHHHHHHHHHHHHHCCEEEEEccccccCCCHHHHHHHH
Confidence 34445555 8988877666432110 0 0 233444445578999999995 78899998
Q ss_pred HHHhc----CCCCcEEEEe
Q 026235 120 AWKEA----GTPNVRIGVV 134 (241)
Q Consensus 120 ~l~~~----~~~~~~i~aI 134 (241)
.+... .+.+.+++++
T Consensus 104 r~~~~~~~~~l~gK~~~~i 122 (242)
T 1sqs_A 104 RIGGWSHLFRLAGKFVVTL 122 (242)
T ss_dssp HTGGGTTTTTTTTCEEEEE
T ss_pred HHHHhccccccCCCEEEEE
Confidence 87432 2345555544
No 131
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=70.36 E-value=26 Score=24.77 Aligned_cols=107 Identities=16% Similarity=0.106 Sum_probs=66.6
Q ss_pred CCeEEEeCCCC-ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeC----HHHHHHHHHHHHhc
Q 026235 50 NPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVFLEAWKEA 124 (241)
Q Consensus 50 g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS----~~aV~~f~~~l~~~ 124 (241)
..+||+.-... ....+.+.|++.|..+... .+..+..+.+.. ..+|.|++-- .++.+. +..+.+.
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~--------~~~~~a~~~l~~-~~~dlvi~d~~l~~~~g~~~-~~~l~~~ 76 (137)
T 3hdg_A 7 ALKILIVEDDTDAREWLSTIISNHFPEVWSA--------GDGEEGERLFGL-HAPDVIITDIRMPKLGGLEM-LDRIKAG 76 (137)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHTTCSCEEEE--------SSHHHHHHHHHH-HCCSEEEECSSCSSSCHHHH-HHHHHHT
T ss_pred ccEEEEEeCCHHHHHHHHHHHHhcCcEEEEE--------CCHHHHHHHHhc-cCCCEEEEeCCCCCCCHHHH-HHHHHhc
Confidence 46899887764 3566888888877765543 233344444432 4688888752 244443 3445443
Q ss_pred CCCCcEEEEeCHH----HHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhC
Q 026235 125 GTPNVRIGVVGAG----TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (241)
Q Consensus 125 ~~~~~~i~aIG~~----Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~ 174 (241)
. ++++++++... ....+.+. |.. ++.++..+.+.|.+.+.+.
T Consensus 77 ~-~~~~ii~~s~~~~~~~~~~~~~~------g~~-~~l~kP~~~~~l~~~i~~~ 122 (137)
T 3hdg_A 77 G-AKPYVIVISAFSEMKYFIKAIEL------GVH-LFLPKPIEPGRLMETLEDF 122 (137)
T ss_dssp T-CCCEEEECCCCCCHHHHHHHHHH------CCS-EECCSSCCHHHHHHHHHHH
T ss_pred C-CCCcEEEEecCcChHHHHHHHhC------Ccc-eeEcCCCCHHHHHHHHHHH
Confidence 2 56777776543 33334456 876 5778888999999888654
No 132
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=70.20 E-value=2.6 Score=34.79 Aligned_cols=35 Identities=23% Similarity=0.248 Sum_probs=25.4
Q ss_pred cEEEEEccCCCc--------hhHHHHHHhCCCeeeEeeeeeee
Q 026235 179 CTVLYPASAKAS--------NEIEEGLSNRGFEVVRLNTYTTE 213 (241)
Q Consensus 179 ~~iL~~~g~~~~--------~~L~~~L~~~G~~V~~~~vY~~~ 213 (241)
.+||++.|.-.. +.+.+.|++.|.+|..+.+|+..
T Consensus 2 mkiLiI~gspr~~S~t~~l~~~~~~~l~~~g~ev~~~dL~~~~ 44 (228)
T 3tem_A 2 KKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMN 44 (228)
T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHHHHHTCEEEEEETTTTT
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEhhhcC
Confidence 577777775432 24677788889999999999753
No 133
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=70.20 E-value=26 Score=24.74 Aligned_cols=107 Identities=13% Similarity=0.051 Sum_probs=63.5
Q ss_pred CCeEEEeCCCC-ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEe---------CHHHHHHHHH
Q 026235 50 NPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT---------SPEAGSVFLE 119 (241)
Q Consensus 50 g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFT---------S~~aV~~f~~ 119 (241)
.++||+.-... ....+...|++.|+++... .+..+..+.+.. ..+|.|++- ..++.+. ..
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~l~~-~~~dlvi~d~~~~~~~~~~~~g~~~-~~ 72 (140)
T 2qr3_A 3 LGTIIIVDDNKGVLTAVQLLLKNHFSKVITL--------SSPVSLSTVLRE-ENPEVVLLDMNFTSGINNGNEGLFW-LH 72 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTSSEEEEE--------CCHHHHHHHHHH-SCEEEEEEETTTTC-----CCHHHH-HH
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCcEEEEe--------CCHHHHHHHHHc-CCCCEEEEeCCcCCCCCCCccHHHH-HH
Confidence 47888887764 3566788888888765432 233444444533 568988874 2244443 33
Q ss_pred HHHhcCCCCcEEEEeCHH-HH---HHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhC
Q 026235 120 AWKEAGTPNVRIGVVGAG-TA---SIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (241)
Q Consensus 120 ~l~~~~~~~~~i~aIG~~-Ta---~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~ 174 (241)
.+.+. .++++++.+... .. ..+.+. |.. ++..+..+.+.|.+.|...
T Consensus 73 ~l~~~-~~~~~ii~ls~~~~~~~~~~~~~~------g~~-~~l~kp~~~~~l~~~l~~~ 123 (140)
T 2qr3_A 73 EIKRQ-YRDLPVVLFTAYADIDLAVRGIKE------GAS-DFVVKPWDNQKLLETLLNA 123 (140)
T ss_dssp HHHHH-CTTCCEEEEEEGGGHHHHHHHHHT------TCC-EEEEESCCHHHHHHHHHHH
T ss_pred HHHhh-CcCCCEEEEECCCCHHHHHHHHHc------Cch-heeeCCCCHHHHHHHHHHH
Confidence 44443 345666665432 22 233344 765 4666778999999888754
No 134
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=69.83 E-value=7 Score=35.20 Aligned_cols=82 Identities=16% Similarity=0.103 Sum_probs=55.3
Q ss_pred CeEEEeCCCC------ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHH-------HHHHH
Q 026235 51 PKVVVTRERG------KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE-------AGSVF 117 (241)
Q Consensus 51 ~~VLitR~~~------~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~-------aV~~f 117 (241)
++|+|.-... -.+.+++.|.+.|+++..+-++.... .+ +.+.+.++.++|.|+|-||. .+..|
T Consensus 266 ~~v~I~Y~S~yGnTe~mA~~ia~gl~~~Gv~~~~~~~~d~~~-~~---~s~i~~~i~~~~~ivlGspT~~~~~~p~~~~~ 341 (410)
T 4dik_A 266 GKVTVIYDSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEER-PA---ISEILKDIPDSEALIFGVSTYEAEIHPLMRFT 341 (410)
T ss_dssp TEEEEEEECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSCC-CC---HHHHHHHSTTCSEEEEEECCTTSSSCHHHHHH
T ss_pred cceeeEEecccChHHHHHHHHHHHHHhcCCceEEEEeccCCC-CC---HHHHHHHHHhCCeEEEEeCCcCCcCCHHHHHH
Confidence 4566654432 14567777888999887655554432 12 23345567899999999885 67777
Q ss_pred HHHHHhcCCCCcEEEEeCH
Q 026235 118 LEAWKEAGTPNVRIGVVGA 136 (241)
Q Consensus 118 ~~~l~~~~~~~~~i~aIG~ 136 (241)
+..+......+.+++++|.
T Consensus 342 l~~l~~~~~~~K~~~~FGS 360 (410)
T 4dik_A 342 LLEIIDKANYEKPVLVFGV 360 (410)
T ss_dssp HHHHHHHCCCCCEEEEEEE
T ss_pred HHHHHhcccCCCEEEEEEC
Confidence 7777766667888888883
No 135
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=69.79 E-value=16 Score=33.22 Aligned_cols=142 Identities=11% Similarity=0.041 Sum_probs=85.4
Q ss_pred hHHHHHHHHHCCCcEEEeceEE------------EeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhc-CCCC
Q 026235 62 NGKLIKALAKHRIDCLELPLIQ------------HAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA-GTPN 128 (241)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~------------~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~-~~~~ 128 (241)
..++.+.|++.|+++..+|=+. .-+.-+ ..+. .+..++..+.-+..++..-....+.+++. +.+-
T Consensus 184 ~~eik~lL~~~Gi~v~~l~d~s~~ld~~~~~~~~~~~~gg-~~~~-ei~~~~~A~~niv~~~~~~~~~A~~Le~~~GiP~ 261 (458)
T 1mio_B 184 MREIKRLFEAMDIPYIMFPDTSGVLDGPTTGEYKMYPEGG-TKIE-DLKDTGNSDLTLSLGSYASDLGAKTLEKKCKVPF 261 (458)
T ss_dssp HHHHHHHHHHHTCCEEESSCCTTTSSCCCCSSCCSSCSCS-BCHH-HHHTTSSCSEEEEESHHHHHHHHHHHHHHSCCCE
T ss_pred HHHHHHHHHHcCCcEEEeccccccccCcccCccceeCCCC-CcHH-HHHhhccCCEEEEEchhhHHHHHHHHHHHhCCCE
Confidence 3689999999999999876332 111011 1222 24467888888888888777777777753 4443
Q ss_pred cEE-EEeC-HHHHHHHHHhhhccCCCCceeecCCCC--CHHHHHHHhhhC--CCCccEEEEEccCCCchhHHHHHHhCCC
Q 026235 129 VRI-GVVG-AGTASIFEEVIQSSKCSLDVAFSPSKA--TGKILASELPKN--GKKKCTVLYPASAKASNEIEEGLSNRGF 202 (241)
Q Consensus 129 ~~i-~aIG-~~Ta~~L~~~~~~~~~Gi~~~~~p~~~--t~e~L~~~l~~~--~~~~~~iL~~~g~~~~~~L~~~L~~~G~ 202 (241)
+.. .-+| ..|.+.|++. ..++|..+ |+.. .-+.+.+.+... ...|+++++..+..-.-.|...|.+.|.
T Consensus 262 ~~~~~p~G~~~T~~~l~~l--a~~~g~~~---~~~i~~e~~~~~~~~~d~~~~l~gkrv~i~~~~~~~~~l~~~L~elG~ 336 (458)
T 1mio_B 262 KTLRTPIGVSATDEFIMAL--SEATGKEV---PASIEEERGQLIDLMIDAQQYLQGKKVALLGDPDEIIALSKFIIELGA 336 (458)
T ss_dssp EEECCCBHHHHHHHHHHHH--HHHHCCCC---CHHHHHHHHHHHHHHHHTHHHHTTCEEEEEECHHHHHHHHHHHHTTTC
T ss_pred EecCCCcCHHHHHHHHHHH--HHHHCCCc---hHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchHHHHHHHHHHHCCC
Confidence 333 3455 6788888775 12235432 1100 011233333322 1257899888665444568889999999
Q ss_pred eeeEeeee
Q 026235 203 EVVRLNTY 210 (241)
Q Consensus 203 ~V~~~~vY 210 (241)
++..+.+.
T Consensus 337 ~vv~v~~~ 344 (458)
T 1mio_B 337 IPKYVVTG 344 (458)
T ss_dssp EEEEEEES
T ss_pred EEEEEEeC
Confidence 88876654
No 136
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=69.72 E-value=24 Score=28.46 Aligned_cols=147 Identities=14% Similarity=0.051 Sum_probs=74.1
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHH-HHHhcCCCCcEEEEeCHHHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLE-AWKEAGTPNVRIGVVGAGTA 139 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~aV~~f~~-~l~~~~~~~~~i~aIG~~Ta 139 (241)
..+.+.++++|+++..... ..+.+...+.++. -..+|+||+.+.+ ....+ .+.+ .+++++++|....
T Consensus 28 ~gi~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~~dgiIi~~~~--~~~~~~~l~~---~~iPvV~~~~~~~ 97 (277)
T 3e61_A 28 RGVEDVALAHGYQVLIGNS-----DNDIKKAQGYLATFVSHNCTGMISTAFN--ENIIENTLTD---HHIPFVFIDRINN 97 (277)
T ss_dssp HHHHHHHHHTTCCEEEEEC-----TTCHHHHHHHHHHHHHTTCSEEEECGGG--HHHHHHHHHH---C-CCEEEGGGCC-
T ss_pred HHHHHHHHHCCCEEEEEeC-----CCCHHHHHHHHHHHHhCCCCEEEEecCC--hHHHHHHHHc---CCCCEEEEeccCC
Confidence 4456677888998875322 1122221222221 2689999998732 22344 4444 3688999887543
Q ss_pred HHHHHhhhccCCCCceeecCCC-CCHHHHHHHhhhCCCCccEEEEEccCCCc-------hhHHHHHHhCCCeeeEeeeee
Q 026235 140 SIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYT 211 (241)
Q Consensus 140 ~~L~~~~~~~~~Gi~~~~~p~~-~t~e~L~~~l~~~~~~~~~iL~~~g~~~~-------~~L~~~L~~~G~~V~~~~vY~ 211 (241)
.. + .+..+. .....+++.|.+.. .++|+++.+.... .-+.+.|++.|.++.. ..+
T Consensus 98 ~~----------~---~V~~D~~~~g~~a~~~L~~~G--~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~-~~~- 160 (277)
T 3e61_A 98 EH----------N---GISTNHFKGGQLQAEVVRKGK--GKNVLIVHENLLIDAFHQRVQGIKYILDQQRIDYKM-LEA- 160 (277)
T ss_dssp ---------------------HHHHHHHHHHHHHHTT--CCSEEEEESCTTSHHHHHHHHHHHHHHHC---CEEE-EEG-
T ss_pred CC----------C---eEEechHHHHHHHHHHHHHCC--CCeEEEEeCCCCCccHHHHHHHHHHHHHHcCCCccc-eec-
Confidence 21 2 112221 23455666776653 4689999886543 2466788888888776 333
Q ss_pred eecCCCChHHHHHHcCCCCEEEEEC
Q 026235 212 TEPVHHVDQTVLKQALSIPVVAVAS 236 (241)
Q Consensus 212 ~~~~~~~~~~~~~~l~~id~IvFtS 236 (241)
.........+.+..-..+|+|+..+
T Consensus 161 ~~~~~~~~~~~l~~~~~~~ai~~~~ 185 (277)
T 3e61_A 161 TLLDNDKKFIDLIKELSIDSIICSN 185 (277)
T ss_dssp GGGGSHHHHHHHHHHHTCCEEEESS
T ss_pred CCCCHHHHHHHhhcCCCCCEEEECC
Confidence 2222111111121125788887654
No 137
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=69.59 E-value=27 Score=24.77 Aligned_cols=107 Identities=13% Similarity=0.104 Sum_probs=62.6
Q ss_pred CCeEEEeCCCC-ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeC------HHHHHHHHHHHH
Q 026235 50 NPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS------PEAGSVFLEAWK 122 (241)
Q Consensus 50 g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS------~~aV~~f~~~l~ 122 (241)
..+|||.-... ....+...|++.|+++... .+..+..+.+ .-..+|.|+.-- .++.+. +..+.
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~l-~~~~~dlvi~D~~l~~~~~~g~~~-~~~l~ 75 (136)
T 3kto_A 6 HPIIYLVDHQKDARAALSKLLSPLDVTIQCF--------ASAESFMRQQ-ISDDAIGMIIEAHLEDKKDSGIEL-LETLV 75 (136)
T ss_dssp -CEEEEECSCHHHHHHHHHHHTTSSSEEEEE--------SSHHHHTTSC-CCTTEEEEEEETTGGGBTTHHHHH-HHHHH
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCcEEEEe--------CCHHHHHHHH-hccCCCEEEEeCcCCCCCccHHHH-HHHHH
Confidence 46899887764 3566788888888766533 2222222223 225688887742 445543 34454
Q ss_pred hcCCCCcEEEEeCH-HH---HHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhC
Q 026235 123 EAGTPNVRIGVVGA-GT---ASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (241)
Q Consensus 123 ~~~~~~~~i~aIG~-~T---a~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~ 174 (241)
+.. ++++++.+.. .. ...+.+. |.. ++..+..+.+.|.+.+.+.
T Consensus 76 ~~~-~~~~ii~~s~~~~~~~~~~~~~~------ga~-~~l~KP~~~~~l~~~i~~~ 123 (136)
T 3kto_A 76 KRG-FHLPTIVMASSSDIPTAVRAMRA------SAA-DFIEKPFIEHVLVHDVQQI 123 (136)
T ss_dssp HTT-CCCCEEEEESSCCHHHHHHHHHT------TCS-EEEESSBCHHHHHHHHHHH
T ss_pred hCC-CCCCEEEEEcCCCHHHHHHHHHc------ChH-HheeCCCCHHHHHHHHHHH
Confidence 443 4566655533 22 2333445 775 4677788999999888653
No 138
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=69.38 E-value=29 Score=25.07 Aligned_cols=109 Identities=7% Similarity=0.103 Sum_probs=64.3
Q ss_pred CCeEEEeCCCC-ChHHHHHHHHHCCC--cEEEeceEEEeeCCCchHHHHHHh--------cCCCccEEEEe----CHHHH
Q 026235 50 NPKVVVTRERG-KNGKLIKALAKHRI--DCLELPLIQHAQGPDTDRLSSVLN--------ADTIFDWIIIT----SPEAG 114 (241)
Q Consensus 50 g~~VLitR~~~-~~~~l~~~L~~~G~--~v~~~P~~~~~~~~~~~~l~~~l~--------~l~~~d~IiFT----S~~aV 114 (241)
+.+|||.-... ....+.+.|++.|. ++... .+..+..+.+. ....+|.|+.- ..++.
T Consensus 4 ~~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~--------~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~ 75 (152)
T 3heb_A 4 SVTIVMIEDDLGHARLIEKNIRRAGVNNEIIAF--------TDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGI 75 (152)
T ss_dssp -CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEE--------SSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCCcceEEEe--------CCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHH
Confidence 46888887764 35678889999987 44432 23334444442 23578888873 33455
Q ss_pred HHHHHHHHhc-CCCCcEEEEe-CHHHH---HHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhC
Q 026235 115 SVFLEAWKEA-GTPNVRIGVV-GAGTA---SIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (241)
Q Consensus 115 ~~f~~~l~~~-~~~~~~i~aI-G~~Ta---~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~ 174 (241)
+.+ ..+.+. ..++++++++ |.... ..+.+. |.. ++..+..+.+.|.+.|.+.
T Consensus 76 ~~~-~~lr~~~~~~~~pii~~t~~~~~~~~~~~~~~------g~~-~~l~KP~~~~~l~~~i~~~ 132 (152)
T 3heb_A 76 DIL-KLVKENPHTRRSPVVILTTTDDQREIQRCYDL------GAN-VYITKPVNYENFANAIRQL 132 (152)
T ss_dssp HHH-HHHHHSTTTTTSCEEEEESCCCHHHHHHHHHT------TCS-EEEECCSSHHHHHHHHHHH
T ss_pred HHH-HHHHhcccccCCCEEEEecCCCHHHHHHHHHC------CCc-EEEeCCCCHHHHHHHHHHH
Confidence 543 344442 2345555554 33332 333455 765 4777788999998888653
No 139
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}
Probab=69.04 E-value=6.2 Score=35.38 Aligned_cols=162 Identities=9% Similarity=0.043 Sum_probs=90.7
Q ss_pred CeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCCCCcE
Q 026235 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVR 130 (241)
Q Consensus 51 ~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~ 130 (241)
|+|+++...+. ..+.|++.| ++...+--. . . .+ .+.++|.++..|..-+.. +.+.. .+++
T Consensus 4 mkIl~~~~~p~---~~~~~~~~~-~v~~~~~~~---~--~---~~---~l~~ad~li~~~~~~v~~--~ll~~---~~Lk 63 (381)
T 3oet_A 4 MKILVDENMPY---ARELFSRLG-EVKAVPGRP---I--P---VE---ELNHADALMVRSVTKVNE--SLLSG---TPIN 63 (381)
T ss_dssp CEEEEETTSTT---HHHHHTTSS-EEEEECC--------C---HH---HHTTCSEEEECTTSCBSH--HHHTT---SCCC
T ss_pred eEEEECCCCcH---HHHHHhhCC-cEEEeCCCC---C--C---HH---HHCCCEEEEECCCCCCCH--HHHcC---CCCE
Confidence 78999876543 456677776 655433111 1 1 11 247889998866432221 11221 2354
Q ss_pred EEE-eCHHH----HHHHHHhhhccCCCCceeecCCCCCHHHHHHHhh-------h---CCCCccEEEEEccCCCchhHHH
Q 026235 131 IGV-VGAGT----ASIFEEVIQSSKCSLDVAFSPSKATGKILASELP-------K---NGKKKCTVLYPASAKASNEIEE 195 (241)
Q Consensus 131 i~a-IG~~T----a~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~-------~---~~~~~~~iL~~~g~~~~~~L~~ 195 (241)
+++ .|-++ .+++++. |+.+.-.| ..+++.++|... + ....|+++.++.-..-...+..
T Consensus 64 ~I~~~~~G~D~iD~~~~~~~------gI~v~n~p-g~~~~~VAE~~l~~lL~l~r~~g~~l~gktvGIIGlG~IG~~vA~ 136 (381)
T 3oet_A 64 FVGTATAGTDHVDEAWLKQA------GIGFSAAP-GCNAIAVVEYVFSALLMLAERDGFSLRDRTIGIVGVGNVGSRLQT 136 (381)
T ss_dssp EEEESSSCCTTBCHHHHHHT------TCEEECCT-TTTHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEECCSHHHHHHHH
T ss_pred EEEEccccccccCHHHHHhC------CEEEEECC-CcCcchhHHHHHHHHHHHHHhcCCccCCCEEEEEeECHHHHHHHH
Confidence 443 23222 3678888 99875555 456666665432 1 1235788988865555677899
Q ss_pred HHHhCCCeeeEeeeeeeecCC-CChHHHHHHcCCCCEEEEECCcc
Q 026235 196 GLSNRGFEVVRLNTYTTEPVH-HVDQTVLKQALSIPVVAVASPSA 239 (241)
Q Consensus 196 ~L~~~G~~V~~~~vY~~~~~~-~~~~~~~~~l~~id~IvFtSps~ 239 (241)
.|+..|++|..+..+...... .....+.+.+.+.|+|++.-|.+
T Consensus 137 ~l~a~G~~V~~~d~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt 181 (381)
T 3oet_A 137 RLEALGIRTLLCDPPRAARGDEGDFRTLDELVQEADVLTFHTPLY 181 (381)
T ss_dssp HHHHTTCEEEEECHHHHHTTCCSCBCCHHHHHHHCSEEEECCCCC
T ss_pred HHHHCCCEEEEECCChHHhccCcccCCHHHHHhhCCEEEEcCcCC
Confidence 999999877655444322111 11112222346789999988754
No 140
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Probab=68.91 E-value=27 Score=27.81 Aligned_cols=65 Identities=17% Similarity=0.114 Sum_probs=41.1
Q ss_pred CCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEece--------------EEEee--CCCchHHHHHHhcCCCccEEEEe
Q 026235 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPL--------------IQHAQ--GPDTDRLSSVLNADTIFDWIIIT 109 (241)
Q Consensus 47 ~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~--------------~~~~~--~~~~~~l~~~l~~l~~~d~IiFT 109 (241)
++.||+||||..... ...+.+.|.+.|++|..+-- .+... +.+.+.+.+.++..+..|.||-.
T Consensus 4 ~~~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~ 83 (244)
T 1cyd_A 4 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGGIGPVDLLVNN 83 (244)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCSEEEEC
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCCCcEEecCCCHHHHHHHHHHcCCCCEEEEC
Confidence 477899999988653 67889999999998765410 11111 12334455555444567777766
Q ss_pred CH
Q 026235 110 SP 111 (241)
Q Consensus 110 S~ 111 (241)
..
T Consensus 84 Ag 85 (244)
T 1cyd_A 84 AA 85 (244)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 141
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2
Probab=68.85 E-value=45 Score=27.26 Aligned_cols=33 Identities=15% Similarity=0.229 Sum_probs=26.2
Q ss_pred CCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEe
Q 026235 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (241)
Q Consensus 47 ~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (241)
.+.|++||||..... ...+++.|.+.|++|..+
T Consensus 29 ~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~ 62 (279)
T 1xg5_A 29 RWRDRLALVTGASGGIGAAVARALVQQGLKVVGC 62 (279)
T ss_dssp GGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 367899999988754 577888999999987653
No 142
>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*
Probab=68.65 E-value=13 Score=30.68 Aligned_cols=33 Identities=9% Similarity=0.045 Sum_probs=27.2
Q ss_pred CCCCCeEEEeCCC-----------------CChHHHHHHHHHCCCcEEEe
Q 026235 47 SNSNPKVVVTRER-----------------GKNGKLIKALAKHRIDCLEL 79 (241)
Q Consensus 47 ~l~g~~VLitR~~-----------------~~~~~l~~~L~~~G~~v~~~ 79 (241)
++.|++||||.+. .-+..+++.|.++|++|..+
T Consensus 5 ~l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~V~l~ 54 (226)
T 1u7z_A 5 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLV 54 (226)
T ss_dssp TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCEEEEE
Confidence 4789999999883 35778999999999998764
No 143
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=68.64 E-value=4 Score=35.03 Aligned_cols=60 Identities=13% Similarity=-0.040 Sum_probs=40.2
Q ss_pred cEEEEEccCCC--c------hhHHHHHHhCCCeeeEeeeeeeecCC-------CChHHHHHHcCCCCEEEEECCc
Q 026235 179 CTVLYPASAKA--S------NEIEEGLSNRGFEVVRLNTYTTEPVH-------HVDQTVLKQALSIPVVAVASPS 238 (241)
Q Consensus 179 ~~iL~~~g~~~--~------~~L~~~L~~~G~~V~~~~vY~~~~~~-------~~~~~~~~~l~~id~IvFtSps 238 (241)
.+||++.|... + +.+.+.|++.|++|..+.+++.-... +...++.+.+...|+|||.||.
T Consensus 59 mKILiI~GS~R~~S~T~~La~~~~~~l~~~G~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~~ADgiV~aSP~ 133 (279)
T 2fzv_A 59 VRILLLYGSLRARSFSRLAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSEGQVWCSPE 133 (279)
T ss_dssp CEEEEEESCCSSSCHHHHHHHHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCSEEEEEEEE
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHHhhCCCEEEEEehhcCCCCccCccCCCHHHHHHHHHHHHCCeEEEEcCc
Confidence 58999988753 1 24566777789999888887642111 1122345556789999999984
No 144
>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}
Probab=68.62 E-value=27 Score=30.19 Aligned_cols=167 Identities=16% Similarity=0.168 Sum_probs=85.9
Q ss_pred CeEEEeCCCCChHHHHHHHH-HCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHH-HHHHHHHHhcCCCC
Q 026235 51 PKVVVTRERGKNGKLIKALA-KHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG-SVFLEAWKEAGTPN 128 (241)
Q Consensus 51 ~~VLitR~~~~~~~l~~~L~-~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV-~~f~~~l~~~~~~~ 128 (241)
|+|+++..........+.|. ..|+++...+- .. +.+++ .+.+.++|.++..+...+ +.+++.+.+.+
T Consensus 1 mki~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~-~~~~~---~~~~~~~d~~i~~~~~~~~~~~l~~~~~~~--- 69 (331)
T 1xdw_A 1 MKVLCYGVRDVELPIFEACNKEFGYDIKCVPD----YL-NTKET---AEMAAGFDAVILRGNCFANKQNLDIYKKLG--- 69 (331)
T ss_dssp CEEEECSCCTTTHHHHHHHGGGTCCEEEECSC----CS-CSHHH---HHTTTTCSEEEECTTCCBCHHHHHHHHHHT---
T ss_pred CEEEEEecCccCHHHHHHHHHhcCeEEEECCC----CC-CHHHH---HHHhcCCeEEEEeCCCCCCHHHHhhCcccC---
Confidence 46888754433444445554 35666544321 11 11333 234578999887542222 23444454422
Q ss_pred cEEEE---eCHH--HHHHHHHhhhccCCCCceeecCCCCCHHHHHHHh----h---h---------------C-------
Q 026235 129 VRIGV---VGAG--TASIFEEVIQSSKCSLDVAFSPSKATGKILASEL----P---K---------------N------- 174 (241)
Q Consensus 129 ~~i~a---IG~~--Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l----~---~---------------~------- 174 (241)
+++++ +|-- -.+++++. |+.+.-.|. ++.+.+++.. . + +
T Consensus 70 Lk~I~~~~~G~d~id~~~~~~~------gI~v~n~p~-~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~ 142 (331)
T 1xdw_A 70 VKYILTRTAGTDHIDKEYAKEL------GFPMAFVPR-YSPNAIAELAVTQAMMLLRHTAYTTSRTAKKNFKVDAFMFSK 142 (331)
T ss_dssp CCEEEESSSCCTTBCHHHHHHT------TCCEECCCC-CCHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCCCSTTCCC
T ss_pred ceEEEEccccccccCHHHHHhC------CcEEEeCCC-CCcHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCccccCcCcc
Confidence 33333 2211 24567788 998766653 4544443321 1 1 0
Q ss_pred CCCccEEEEEccCCCchhHHHHHHhCCCeeeEeeeeeeecCCCC-----hHHHHHHcCCCCEEEEECCc
Q 026235 175 GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHV-----DQTVLKQALSIPVVAVASPS 238 (241)
Q Consensus 175 ~~~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~-----~~~~~~~l~~id~IvFtSps 238 (241)
...++++.++.-..-...+.+.|+..|++|. +|.+.+.... ...+.+.+.+.|+|+..-|.
T Consensus 143 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~---~~d~~~~~~~~~~~~~~~l~ell~~aDvV~~~~p~ 208 (331)
T 1xdw_A 143 EVRNCTVGVVGLGRIGRVAAQIFHGMGATVI---GEDVFEIKGIEDYCTQVSLDEVLEKSDIITIHAPY 208 (331)
T ss_dssp CGGGSEEEEECCSHHHHHHHHHHHHTTCEEE---EECSSCCCSCTTTCEECCHHHHHHHCSEEEECCCC
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCEEE---EECCCccHHHHhccccCCHHHHHhhCCEEEEecCC
Confidence 1235678777554445678889999997764 4544332210 01122223578999987664
No 145
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Probab=68.57 E-value=18 Score=30.65 Aligned_cols=64 Identities=17% Similarity=0.163 Sum_probs=42.8
Q ss_pred CCCCCCCeEEEeCCCC-ChHHHHHHHHHCCCcEEEec-----------------------eEEEeeCC--CchHHHHHHh
Q 026235 45 SASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELP-----------------------LIQHAQGP--DTDRLSSVLN 98 (241)
Q Consensus 45 ~~~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P-----------------------~~~~~~~~--~~~~l~~~l~ 98 (241)
...+.+|+||||.... -+..+.+.|.+.|.+|..+- -++....+ +.+.+.+.+
T Consensus 20 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~- 98 (351)
T 3ruf_A 20 QLIFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVM- 98 (351)
T ss_dssp HHHHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHT-
T ss_pred hCCCCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHh-
Confidence 3445689999999865 36788888989999887652 22333222 334455544
Q ss_pred cCCCccEEEEeCH
Q 026235 99 ADTIFDWIIITSP 111 (241)
Q Consensus 99 ~l~~~d~IiFTS~ 111 (241)
.++|.||.+..
T Consensus 99 --~~~d~Vih~A~ 109 (351)
T 3ruf_A 99 --KGVDHVLHQAA 109 (351)
T ss_dssp --TTCSEEEECCC
T ss_pred --cCCCEEEECCc
Confidence 58999998864
No 146
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}
Probab=68.48 E-value=24 Score=29.35 Aligned_cols=36 Identities=17% Similarity=0.153 Sum_probs=28.7
Q ss_pred cCCCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEe
Q 026235 44 ASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (241)
Q Consensus 44 ~~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (241)
...++.||+||||..... ...+++.|.++|++|...
T Consensus 10 ~~~~l~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~ 46 (291)
T 3rd5_A 10 DLPSFAQRTVVITGANSGLGAVTARELARRGATVIMA 46 (291)
T ss_dssp GCCCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred hccCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEE
Confidence 345688999999988753 678899999999987654
No 147
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=68.30 E-value=6.5 Score=34.66 Aligned_cols=120 Identities=13% Similarity=0.043 Sum_probs=62.1
Q ss_pred HHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHHHHHH
Q 026235 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEE 144 (241)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~L~~ 144 (241)
+.+.++++|+.+..... . ...+.+...+ -..+|+||+.... ....+.+.+ .+++++.+|......-..
T Consensus 46 i~~~a~~~g~~~~i~~~---~--~~~~~i~~l~--~~~vDGiIi~~~~--~~~~~~l~~---~~iPvV~i~~~~~~~~~~ 113 (412)
T 4fe7_A 46 VGEYLQASQSEWDIFIE---E--DFRARIDKIK--DWLGDGVIADFDD--KQIEQALAD---VDVPIVGVGGSYHLAESY 113 (412)
T ss_dssp HHHHHHHHTCCEEEEEC---C---CC----------CCCSEEEEETTC--HHHHHHHTT---CCSCEEEEEECCSSGGGS
T ss_pred HHHHHHhcCCCeEEEec---C--CccchhhhHh--cCCCCEEEEecCC--hHHHHHHhh---CCCCEEEecCCccccccC
Confidence 44566778988776541 1 1112222222 2689999995432 223333332 468899998643211011
Q ss_pred hhhccCCCCceeecCCC-CCHHHHHHHhhhCCCCccEEEEEccCCCc---------hhHHHHHHhCCCeee
Q 026235 145 VIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS---------NEIEEGLSNRGFEVV 205 (241)
Q Consensus 145 ~~~~~~~Gi~~~~~p~~-~t~e~L~~~l~~~~~~~~~iL~~~g~~~~---------~~L~~~L~~~G~~V~ 205 (241)
. ++.. +..+. ..+..+++.|.+.. .++|.++.+.... .-+.+.|++.|.+..
T Consensus 114 ~------~~~~-V~~D~~~~g~~a~~~L~~~G--~r~I~~i~~~~~~~~~~~~~R~~Gf~~al~~~g~~~~ 175 (412)
T 4fe7_A 114 P------PVHY-IATDNYALVESAFLHLKEKG--VNRFAFYGLPESSGKRWATEREYAFRQLVAEEKYRGV 175 (412)
T ss_dssp C------SSEE-EEECHHHHHHHHHHHHHHTT--CCEEEEECCCTTSCCHHHHHHHHHHHHHHTTSSSCCE
T ss_pred C------CCCE-EEeCHHHHHHHHHHHHHHcC--CceEEEecccccccccHHHHHHHHHHHHHHHcCCCcc
Confidence 2 3222 23332 23455566676653 4689999886532 225677888887653
No 148
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=68.20 E-value=3.7 Score=32.67 Aligned_cols=34 Identities=18% Similarity=0.186 Sum_probs=23.0
Q ss_pred EEEEEccCCC----c------hhHHHHHHhCC--CeeeEeeee--eee
Q 026235 180 TVLYPASAKA----S------NEIEEGLSNRG--FEVVRLNTY--TTE 213 (241)
Q Consensus 180 ~iL~~~g~~~----~------~~L~~~L~~~G--~~V~~~~vY--~~~ 213 (241)
++|++.|... + +.+.+.|++.| .+|..+.+| +..
T Consensus 3 kilii~gS~r~~~~s~t~~la~~~~~~~~~~g~~~~v~~~dL~~~~~~ 50 (208)
T 2hpv_A 3 KLLVVKAHPLTKEESRSVRALETFLASYRETNPSDEIEILDVYAPETN 50 (208)
T ss_dssp EEEEEECCSSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTCGGGC
T ss_pred eEEEEEecCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEeeCCcccCC
Confidence 5666665543 1 34667787776 899999998 654
No 149
>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*
Probab=68.05 E-value=4.3 Score=35.51 Aligned_cols=166 Identities=15% Similarity=0.147 Sum_probs=90.6
Q ss_pred CCeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHH-HHHHHHHHhcCCCC
Q 026235 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG-SVFLEAWKEAGTPN 128 (241)
Q Consensus 50 g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV-~~f~~~l~~~~~~~ 128 (241)
.++||++.+-. ++..+.|++.| ++...+. ....+.+++.+. +.++|.++..+..-+ +.+++.+ ++
T Consensus 2 ~~kvlv~~~~~--~~~~~~l~~~~-~v~~~~~---~~~~~~~~~~~~---~~~~d~~i~~~~~~i~~~~l~~~-----~~ 67 (330)
T 4e5n_A 2 LPKLVITHRVH--EEILQLLAPHC-ELITNQT---DSTLTREEILRR---CRDAQAMMAFMPDRVDADFLQAC-----PE 67 (330)
T ss_dssp CCEEEECSCCC--HHHHHHHTTTC-EEECCCS---SSCCCHHHHHHH---HTTCSEEEECTTCCBCHHHHHHC-----TT
T ss_pred CCEEEEecCCC--HHHHHHHHhCC-eEEEecC---CCCCCHHHHHHH---hCCCeEEEEeCCCCCCHHHHhhC-----CC
Confidence 36899998753 56677888776 5543221 011123444443 478899987544322 2233322 34
Q ss_pred cEEEE-e--CHH--HHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhh-------h-----------------------
Q 026235 129 VRIGV-V--GAG--TASIFEEVIQSSKCSLDVAFSPSKATGKILASELP-------K----------------------- 173 (241)
Q Consensus 129 ~~i~a-I--G~~--Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~-------~----------------------- 173 (241)
+++++ . |-- -.+++.+. |+.+.-.| ...++.++|... +
T Consensus 68 Lk~I~~~~~G~d~id~~~~~~~------gI~v~n~~-~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~ 140 (330)
T 4e5n_A 68 LRVIGCALKGFDNFDVDACTAR------GVWLTFVP-DLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQPRFYG 140 (330)
T ss_dssp CCEEEESSSCCTTBCHHHHHHT------TCEEECCS-STTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCSCCCC
T ss_pred CcEEEECCCcccccCHHHHHhc------CcEEEeCC-CCCchHHHHHHHHHHHHHHhChHHHHHHHHhCCccccCccccC
Confidence 55444 2 321 23677888 99876555 455665554321 0
Q ss_pred CCCCccEEEEEccCCCchhHHHHHHhCCCeeeEeeeeeeecCCCCh--------HHHHHHcCCCCEEEEECCcc
Q 026235 174 NGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVD--------QTVLKQALSIPVVAVASPSA 239 (241)
Q Consensus 174 ~~~~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~--------~~~~~~l~~id~IvFtSps~ 239 (241)
....|+++.++.-..-...+...|+..|++| .+|.+.+..... ..+.+.+...|+|++.-|.+
T Consensus 141 ~~l~g~tvGIIG~G~IG~~vA~~l~~~G~~V---~~~d~~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~P~t 211 (330)
T 4e5n_A 141 TGLDNATVGFLGMGAIGLAMADRLQGWGATL---QYHEAKALDTQTEQRLGLRQVACSELFASSDFILLALPLN 211 (330)
T ss_dssp CCSTTCEEEEECCSHHHHHHHHHTTTSCCEE---EEECSSCCCHHHHHHHTEEECCHHHHHHHCSEEEECCCCS
T ss_pred CccCCCEEEEEeeCHHHHHHHHHHHHCCCEE---EEECCCCCcHhHHHhcCceeCCHHHHHhhCCEEEEcCCCC
Confidence 0124678888855555567888898888765 455443311100 01122235789999887743
No 150
>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}
Probab=68.04 E-value=19 Score=29.99 Aligned_cols=32 Identities=16% Similarity=0.222 Sum_probs=26.6
Q ss_pred CCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEe
Q 026235 48 NSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (241)
Q Consensus 48 l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (241)
++||++|||....+ ...+++.|.+.|++|...
T Consensus 9 f~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~ 41 (242)
T 4b79_A 9 YAGQQVLVTGGSSGIGAAIAMQFAELGAEVVAL 41 (242)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEE
Confidence 46999999988754 677899999999998754
No 151
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=67.99 E-value=35 Score=28.68 Aligned_cols=122 Identities=20% Similarity=0.043 Sum_probs=68.0
Q ss_pred CCccEEEE-eCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHHHHHH-hhhccCCCCceeecCC-CCCHHHHHHHhhhCCCC
Q 026235 101 TIFDWIII-TSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEE-VIQSSKCSLDVAFSPS-KATGKILASELPKNGKK 177 (241)
Q Consensus 101 ~~~d~IiF-TS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~L~~-~~~~~~~Gi~~~~~p~-~~t~e~L~~~l~~~~~~ 177 (241)
...+.||- .+..........+.+. +++++..+..+ ..+.. . ..-..+.+. ......+++.+.+. .
T Consensus 71 ~~v~~iiG~~~s~~~~~~~~~~~~~---~ip~i~~~~~~-~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~--g 138 (368)
T 4eyg_A 71 DKVNVIAGFGITPAALAAAPLATQA---KVPEIVMAAGT-SIITERS------PYIVRTSFTLAQSSIIIGDWAAKN--G 138 (368)
T ss_dssp SCCSEEEECSSHHHHHHHHHHHHHH---TCCEEESSCCC-GGGGGGC------TTEEESSCCHHHHHHHHHHHHHHT--T
T ss_pred CCcEEEECCCccHHHHHHHHHHHhC---CceEEeccCCC-hhhccCC------CCEEEecCChHHHHHHHHHHHHHc--C
Confidence 68899884 4555666666666654 36666665322 22221 2 211112232 12235567677665 3
Q ss_pred ccEEEEEccCCC-----chhHHHHHHhCCCeeeEeeeeeeecCCCChHHHHHHc--CCCCEEEEEC
Q 026235 178 KCTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVAS 236 (241)
Q Consensus 178 ~~~iL~~~g~~~-----~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~l--~~id~IvFtS 236 (241)
.+++.++..+.. ...+.+.|++.|.++.....|.... .+.... +..+ .++|+|++..
T Consensus 139 ~~~ia~i~~~~~~g~~~~~~~~~~l~~~g~~v~~~~~~~~~~-~d~~~~-~~~l~~~~~d~v~~~~ 202 (368)
T 4eyg_A 139 IKKVATLTSDYAPGNDALAFFKERFTAGGGEIVEEIKVPLAN-PDFAPF-LQRMKDAKPDAMFVFV 202 (368)
T ss_dssp CCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECSSS-CCCHHH-HHHHHHHCCSEEEEEC
T ss_pred CCEEEEEecCchHhHHHHHHHHHHHHHcCCEEEEEEeCCCCC-CcHHHH-HHHHHhcCCCEEEEec
Confidence 468877765432 2467888999999887666665432 222332 3233 4789988743
No 152
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}
Probab=67.95 E-value=26 Score=28.75 Aligned_cols=34 Identities=12% Similarity=0.077 Sum_probs=27.4
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEe
Q 026235 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (241)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (241)
..+.||++|||....+ ...+++.|.+.|++|...
T Consensus 6 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~ 40 (267)
T 3t4x_A 6 MQLKGKTALVTGSTAGIGKAIATSLVAEGANVLIN 40 (267)
T ss_dssp CCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred cccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE
Confidence 4678999999988653 677899999999987753
No 153
>1fs0_G ATP synthase gamma subunit; coiled coil, epsilon, hydrolase; 2.10A {Escherichia coli} SCOP: c.49.2.1
Probab=67.79 E-value=7.3 Score=32.19 Aligned_cols=49 Identities=14% Similarity=0.241 Sum_probs=36.7
Q ss_pred CccEEEEeC---------HHHHHHHHHHHHhcC--CCCcEEEEeCHHHHHHHHHhhhccCCCCcee
Q 026235 102 IFDWIIITS---------PEAGSVFLEAWKEAG--TPNVRIGVVGAGTASIFEEVIQSSKCSLDVA 156 (241)
Q Consensus 102 ~~d~IiFTS---------~~aV~~f~~~l~~~~--~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~ 156 (241)
..-+|++|| .|-++...+.+.+.. -.++.+++||.+..+.++.. |..+.
T Consensus 57 ~~~~IvitSDrGLcG~~Nsni~k~~~~~i~~~~~~g~~~~l~~vG~Kg~~~~~~~------~~~i~ 116 (230)
T 1fs0_G 57 RVGYLVVSTDRGLCGGLNINLFKKLLAEMKTWTDKGVQCDLAMIGSKGVSFFNSV------GGNVV 116 (230)
T ss_dssp EEEEEEECCSSSCSTTHHHHHHHHHHHHHHHHHHTTCEEEEEEESHHHHHHHHHH------CCCEE
T ss_pred cEEEEEEeCCccccccccHHHHHHHHHHHHHhhcCCCcEEEEEEeHHHHHHHHhC------CCceE
Confidence 446899999 777887766664421 12568999999999999988 87653
No 154
>3u7q_A Nitrogenase molybdenum-iron protein alpha chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1g21_A* 1g20_A* 1fp4_A* 1m1n_A* 1l5h_A* 1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A* 3min_A* 3k1a_A* 1h1l_A* 1qgu_A* 1qh1_A* 1qh8_A*
Probab=67.24 E-value=12 Score=34.55 Aligned_cols=137 Identities=11% Similarity=0.080 Sum_probs=78.5
Q ss_pred CChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHh-cCCCCcEEEEeCH-H
Q 026235 60 GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE-AGTPNVRIGVVGA-G 137 (241)
Q Consensus 60 ~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~-~~~~~~~i~aIG~-~ 137 (241)
....++.+.|++.|+++..+.. .....+++ ..+++.+.-+..++.......+.+++ .+.+-+.+--+|. .
T Consensus 233 gD~~eik~lL~~~Gi~v~~~~~----g~~t~~ei----~~~~~A~~niv~~~~~~~~~A~~Le~~~GiP~i~~~p~G~~~ 304 (492)
T 3u7q_A 233 GDAWSSRILLEEMGLRCVAQWS----GDGSISEI----ELTPKVKLNLVHCYRSMNYISRHMEEKYGIPWMEYNFFGPTK 304 (492)
T ss_dssp TTTHHHHHHHHHTTCEEEEEEE----TTCCHHHH----HHGGGCSEEEESCHHHHHHHHHHHHHHHCCCEEECCCSSHHH
T ss_pred hhHHHHHHHHHHCCCeEEEEeC----CCCCHHHH----HhhhcCcEEEEEChHHHHHHHHHHHHHhCCceEecCccCHHH
Confidence 3468999999999999886531 11123333 34567778888887666666776754 3544222222664 4
Q ss_pred HHHHHHHhhhccCCCCceeecCCC---C---CHHHHHHHhh---hCCCCccEEEEEccCCCchhHHHHHHhCCCeeeEee
Q 026235 138 TASIFEEVIQSSKCSLDVAFSPSK---A---TGKILASELP---KNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLN 208 (241)
Q Consensus 138 Ta~~L~~~~~~~~~Gi~~~~~p~~---~---t~e~L~~~l~---~~~~~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~~~ 208 (241)
|.+.|++. ..++|.. .|+. . --..+.+.|. +. ..|+|+++..+....-.+...|.+.|.+|..+-
T Consensus 305 T~~~L~~i--a~~~g~~---~~~~~e~~i~~e~~~~~~~l~~~~~~-l~GKrv~i~g~~~~~~~la~~L~ElGm~vv~~g 378 (492)
T 3u7q_A 305 TIESLRAI--AAKFDES---IQKKCEEVIAKYKPEWEAVVAKYRPR-LEGKRVMLYIGGLRPRHVIGAYEDLGMEVVGTG 378 (492)
T ss_dssp HHHHHHHH--HTTSCHH---HHHHHHHHHHHHHHHHHHHHHHHHHH-HTTCEEEECBSSSHHHHTHHHHHTTTCEEEEEE
T ss_pred HHHHHHHH--HHHhCCc---chHHHHHHHHHHHHHHHHHHHHHHHH-hCCCEEEEECCCchHHHHHHHHHHCCCEEEEEe
Confidence 67777776 2223421 1110 0 0011222222 22 257899887554433458889999999988755
Q ss_pred ee
Q 026235 209 TY 210 (241)
Q Consensus 209 vY 210 (241)
.+
T Consensus 379 t~ 380 (492)
T 3u7q_A 379 YE 380 (492)
T ss_dssp ES
T ss_pred CC
Confidence 54
No 155
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=67.01 E-value=43 Score=26.06 Aligned_cols=106 Identities=13% Similarity=0.112 Sum_probs=64.7
Q ss_pred eEEEeCCCC-ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCCCCcE
Q 026235 52 KVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVR 130 (241)
Q Consensus 52 ~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~ 130 (241)
+||+.-... ....+...|+..|+++... .+..+....+ .-..+|.|+....++.+.. ..+.+. ..+++
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~al~~l-~~~~~dlvilp~~~g~~~~-~~lr~~-~~~~~ 70 (223)
T 2hqr_A 2 RVLLIEKNSVLGGEIEKGLNVKGFMADVT--------ESLEDGEYLM-DIRNYDLVMVSDKNALSFV-SRIKEK-HSSIV 70 (223)
T ss_dssp CEEEECSCHHHHHHHHHHHGGGTCCEEEE--------SSHHHHHHHH-TTSCCSEEEECCTTHHHHH-HHHHHH-CTTSE
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCcEEEEE--------CCHHHHHHHH-hcCCCCEEEeCCCCHHHHH-HHHHhC-CCCCc
Confidence 577776654 3556778888888766422 2334444445 2357899995455666544 444444 22677
Q ss_pred EEEeCHH----HHHHHHHhhhccCCCCceeecCCCC-CHHHHHHHhhhCC
Q 026235 131 IGVVGAG----TASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNG 175 (241)
Q Consensus 131 i~aIG~~----Ta~~L~~~~~~~~~Gi~~~~~p~~~-t~e~L~~~l~~~~ 175 (241)
++.+... ....+.+. |.. ++..+.. +.+.|...|....
T Consensus 71 ii~lt~~~~~~~~~~~~~~------Ga~-~~l~Kp~~~~~~L~~~i~~~~ 113 (223)
T 2hqr_A 71 VLVSSDNPTSEEEVHAFEQ------GAD-DYIAKPYRSIKALVARIEARL 113 (223)
T ss_dssp EEEEESSCCHHHHHHHHHH------TCS-EEEETTCSCTHHHHHHHHHHT
T ss_pred EEEEECCCCHHHHHHHHHc------CCC-EEEECCCCCHHHHHHHHHHHh
Confidence 7766432 33334455 876 4677778 8999998887543
No 156
>1mio_A Nitrogenase molybdenum iron protein (alpha chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=66.85 E-value=4.7 Score=37.74 Aligned_cols=140 Identities=9% Similarity=0.053 Sum_probs=82.6
Q ss_pred ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhc-CCCCcEEEEeC-HHH
Q 026235 61 KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA-GTPNVRIGVVG-AGT 138 (241)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~-~~~~~~i~aIG-~~T 138 (241)
...++.+.|++.|+++.... ......+ .+..++..+.-+..++.......+.+++. +.+-+.+.-+| ..|
T Consensus 220 D~~eikrlL~~~Gi~v~~~~----~gg~t~~----ei~~~~~A~~niv~~~~~~~~~A~~Leer~GiP~i~~~piG~~~T 291 (533)
T 1mio_A 220 DAWEMDRVLEKIGYHVNATL----TGDATYE----KVQNADKADLNLVQCHRSINYIAEMMETKYGIPWIKCNFIGVDGI 291 (533)
T ss_dssp HHHHHHHHHHHHTCEEEEEE----ETTCCHH----HHHBTTSCSEEEESCHHHHHHHHHHHHHHHCCCEEECCCSSHHHH
T ss_pred hHHHHHHHHHHCCCeEEEEe----CCCCCHH----HHHhhhcCCEEEEECHHHHHHHHHHHHHHhCCCeEEecCCCHHHH
Confidence 45789999999999988621 1111222 24467888999988887777777777653 55433333477 567
Q ss_pred HHHHHHhhhccCCCCce--eecCCCC--CHHHHHHHhh---hCCCCccEEEEEccCCCchhHHHHHHhCCCeeeEeeeee
Q 026235 139 ASIFEEVIQSSKCSLDV--AFSPSKA--TGKILASELP---KNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYT 211 (241)
Q Consensus 139 a~~L~~~~~~~~~Gi~~--~~~p~~~--t~e~L~~~l~---~~~~~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~ 211 (241)
.+.|++. ..++|... .-+++.. --..+.+.|. +. ..|+++++..+....-.+...|.+.|.++..+-.+.
T Consensus 292 ~~~Lr~i--a~~~g~~~~~~~~e~~i~~e~~~~~~~l~~~~~~-l~GKrv~i~~~~~~~~~l~~~l~ElGm~vv~~~t~~ 368 (533)
T 1mio_A 292 VETLRDM--AKCFDDPELTKRTEEVIAEEIAAIQDDLDYFKEK-LQGKTACLYVGGSRSHTYMNMLKSFGVDSLVAGFEF 368 (533)
T ss_dssp HHHHHHH--HHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTCEEEEEESSSHHHHHHHHHHHHTCEEEEEEESS
T ss_pred HHHHHHH--HHHhCCCcccccchHHHHHHHHHHHHHHHHHHHH-hCCCEEEEECCchHHHHHHHHHHHCCCEEEEEEecc
Confidence 7777776 12235310 0001000 0011222222 22 257898887665444568889999999987766544
No 157
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=66.69 E-value=6 Score=32.43 Aligned_cols=59 Identities=15% Similarity=0.271 Sum_probs=35.3
Q ss_pred EEEEEccCCC--c------hhHHHHHHhC-CCeeeEeeeeeeecC-----------------C--CChHHHHHHcCCCCE
Q 026235 180 TVLYPASAKA--S------NEIEEGLSNR-GFEVVRLNTYTTEPV-----------------H--HVDQTVLKQALSIPV 231 (241)
Q Consensus 180 ~iL~~~g~~~--~------~~L~~~L~~~-G~~V~~~~vY~~~~~-----------------~--~~~~~~~~~l~~id~ 231 (241)
+||++.|... + +.+.+.|++. |++|..+.+|+.... . +...++.+.+...|+
T Consensus 3 kIliI~gS~r~~s~T~~la~~i~~~l~~~~g~~v~~~dl~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~AD~ 82 (242)
T 1sqs_A 3 KIFIYAGVRNHNSKTLEYTKRLSSIISSRNNVDISFRTPFNSELEISNSDSEELFKKGIDRQSNADDGGVIKKELLESDI 82 (242)
T ss_dssp EEEEEECCCCTTCHHHHHHHHHHHHHHHHSCCEEEEECTTTCCCCCCCCCHHHHHHHCCCSSTTTSTHHHHHHHHHHCSE
T ss_pred eEEEEECCCCCCChHHHHHHHHHHHHHHhcCCeEEEEEcccCCCCCCCchHHhhccCCCCccchHHHHHHHHHHHHHCCE
Confidence 5666666532 1 2345556655 888877777754211 1 223344555678999
Q ss_pred EEEECCc
Q 026235 232 VAVASPS 238 (241)
Q Consensus 232 IvFtSps 238 (241)
|||.||.
T Consensus 83 iI~~sP~ 89 (242)
T 1sqs_A 83 IIISSPV 89 (242)
T ss_dssp EEEEEEE
T ss_pred EEEEccc
Confidence 9999984
No 158
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=66.67 E-value=8 Score=30.18 Aligned_cols=17 Identities=6% Similarity=0.241 Sum_probs=13.2
Q ss_pred HHHHcCCCCEEEEECCc
Q 026235 222 VLKQALSIPVVAVASPS 238 (241)
Q Consensus 222 ~~~~l~~id~IvFtSps 238 (241)
+.+.+...|+|+|.||.
T Consensus 78 ~~~~l~~aD~iI~~sP~ 94 (191)
T 1t0i_A 78 WSRIVNALDIIVFVTPQ 94 (191)
T ss_dssp HHHHHHTCSEEEEEEEC
T ss_pred HHHHHHhCCEEEEEece
Confidence 44456789999999984
No 159
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=66.61 E-value=20 Score=34.57 Aligned_cols=112 Identities=17% Similarity=0.099 Sum_probs=71.6
Q ss_pred CCeEEEeCCCCChHHHHH---------HHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCH--------H
Q 026235 50 NPKVVVTRERGKNGKLIK---------ALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP--------E 112 (241)
Q Consensus 50 g~~VLitR~~~~~~~l~~---------~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~--------~ 112 (241)
..+|++.........+-. .|+..|++|+.+..-. + .+++.+...+ .+.|.|..++- .
T Consensus 602 kGKVVIATVgGD~HDIGKklVaNIVa~~LE~aGFEVIDLGvdV--P---pEeIVeAA~E-edADVVGLSsLLTt~dihL~ 675 (763)
T 3kp1_A 602 PLKIVAATVGEDEHSVGLREVIDIKHGGIEKYGVEVHYLGTSV--P---VEKLVDAAIE-LKADAILASTIISHDDIHYK 675 (763)
T ss_dssp CCEEEEEEBTTCCCCHHHHHTTSTTTTCGGGGTCEEEECCSSB--C---HHHHHHHHHH-TTCSEEEEECCCCGGGHHHH
T ss_pred CCEEEEEeCCCChhhhhhHHHHHHHHHHHHhCCCEEEECCCCC--C---HHHHHHHHHH-cCCCEEEEeccccCchhhHH
Confidence 456777765544333333 5899999999886542 1 2333333323 67899998853 4
Q ss_pred HHHHHHHHHHhcCCC-CcEEEEeCHH-HHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhC
Q 026235 113 AGSVFLEAWKEAGTP-NVRIGVVGAG-TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (241)
Q Consensus 113 aV~~f~~~l~~~~~~-~~~i~aIG~~-Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~ 174 (241)
.++.+.+.+++.+.. ++++++=|.. |.+..++. |... +.++...+..+++.|.+.
T Consensus 676 ~MkevIelLrE~GlrDkIkVIVGGa~~tqd~AkeI------GADa-~f~DATeAVeVA~~Ll~~ 732 (763)
T 3kp1_A 676 NMKRIHELAVEKGIRDKIMIGCGGTQVTPEVAVKQ------GVDA-GFGRGSKGIHVATFLVKK 732 (763)
T ss_dssp HHHHHHHHHHHTTCTTTSEEEEECTTCCHHHHHTT------TCSE-EECTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHc------CCcE-EECCcchHHHHHHHHHHH
Confidence 456667778887876 4888888864 44445555 9876 445566777777776543
No 160
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=66.46 E-value=34 Score=24.70 Aligned_cols=115 Identities=12% Similarity=0.099 Sum_probs=65.4
Q ss_pred CCCCCCCeEEEeCCCC-ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeC----HHHHHHHHH
Q 026235 45 SASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVFLE 119 (241)
Q Consensus 45 ~~~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS----~~aV~~f~~ 119 (241)
.....+++||+.-... ....+...|++.|.... +....+..+..+.+.. ..+|.|+.-- .++.+. ..
T Consensus 10 ~~~~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~------v~~~~~~~~a~~~l~~-~~~dlii~d~~l~~~~g~~~-~~ 81 (152)
T 3eul_A 10 NPQPEKVRVVVGDDHPLFREGVVRALSLSGSVNV------VGEADDGAAALELIKA-HLPDVALLDYRMPGMDGAQV-AA 81 (152)
T ss_dssp ----CCEEEEEECSSHHHHHHHHHHHHHHSSEEE------EEEESSHHHHHHHHHH-HCCSEEEEETTCSSSCHHHH-HH
T ss_pred CCCCceEEEEEEcCCHHHHHHHHHHHhhCCCeEE------EEEeCCHHHHHHHHHh-cCCCEEEEeCCCCCCCHHHH-HH
Confidence 3445578899987764 45668888888873211 1112333444444433 4689888742 234443 34
Q ss_pred HHHhcCCCCcEEEEeCH-H---HHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCC
Q 026235 120 AWKEAGTPNVRIGVVGA-G---TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG 175 (241)
Q Consensus 120 ~l~~~~~~~~~i~aIG~-~---Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~ 175 (241)
.+.+. .+.++++.+.. . ....+.+. |.. ++..+..+.+.|.+.+....
T Consensus 82 ~l~~~-~~~~~ii~~s~~~~~~~~~~~~~~------g~~-~~l~Kp~~~~~l~~~i~~~~ 133 (152)
T 3eul_A 82 AVRSY-ELPTRVLLISAHDEPAIVYQALQQ------GAA-GFLLKDSTRTEIVKAVLDCA 133 (152)
T ss_dssp HHHHT-TCSCEEEEEESCCCHHHHHHHHHT------TCS-EEEETTCCHHHHHHHHHHHH
T ss_pred HHHhc-CCCCeEEEEEccCCHHHHHHHHHc------CCC-EEEecCCCHHHHHHHHHHHH
Confidence 44443 24566666543 2 22334455 876 47777889999998887653
No 161
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=66.39 E-value=8.5 Score=32.93 Aligned_cols=86 Identities=8% Similarity=-0.013 Sum_probs=53.3
Q ss_pred CCCeEEEeCCCC----ChHH----HHHHHHHCCCcEEEeceEEEeeCCC------chHHHHHHhcCCCccEEEEeCH---
Q 026235 49 SNPKVVVTRERG----KNGK----LIKALAKHRIDCLELPLIQHAQGPD------TDRLSSVLNADTIFDWIIITSP--- 111 (241)
Q Consensus 49 ~g~~VLitR~~~----~~~~----l~~~L~~~G~~v~~~P~~~~~~~~~------~~~l~~~l~~l~~~d~IiFTS~--- 111 (241)
..++||+.-+.. .+.. +.+.+++.|+++..+.+.+.. +.+ .+.+.+..+.+...|.|||.||
T Consensus 57 ~~mKILiI~GS~R~~S~T~~La~~~~~~l~~~G~eveiidL~dlp-l~~~d~~~~~d~v~~l~e~I~~ADgiV~aSP~Yn 135 (279)
T 2fzv_A 57 PPVRILLLYGSLRARSFSRLAVEEAARLLQFFGAETRIFDPSDLP-LPDQVQSDDHPAVKELRALSEWSEGQVWCSPERH 135 (279)
T ss_dssp SCCEEEEEESCCSSSCHHHHHHHHHHHHHHHTTCEEEEBCCTTCC-CTTTSGGGCCHHHHHHHHHHHHCSEEEEEEEEET
T ss_pred CCCEEEEEEeCCCCCCHHHHHHHHHHHHHhhCCCEEEEEehhcCC-CCccCccCCCHHHHHHHHHHHHCCeEEEEcCccc
Confidence 346777664443 2333 444566679999887776542 111 2334555556678999999995
Q ss_pred ----HHHHHHHHHHHhc-----CCCCcEEEEeC
Q 026235 112 ----EAGSVFLEAWKEA-----GTPNVRIGVVG 135 (241)
Q Consensus 112 ----~aV~~f~~~l~~~-----~~~~~~i~aIG 135 (241)
...++|++.+... .+.++++++|+
T Consensus 136 ~sipg~LKn~IDrl~~~~g~~~~l~gK~v~lv~ 168 (279)
T 2fzv_A 136 GQITSVMKAQIDHLPLEMAGIRPTQGRTLAVMQ 168 (279)
T ss_dssp TEECHHHHHHHHHSCSCBTTBCSSTTCEEEEEE
T ss_pred cCcCHHHHHHHHHHhhhcccccccCCCEEEEEE
Confidence 6889999987532 24556655543
No 162
>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*
Probab=66.39 E-value=28 Score=29.29 Aligned_cols=68 Identities=15% Similarity=0.133 Sum_probs=37.5
Q ss_pred cccccCCCCCCCeEEEeCCCC-ChHHHHHHHHHCCCcEEEeceE------EEee--CCCchHHHHHHhcCCCccEEEEeC
Q 026235 40 DATSASASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLI------QHAQ--GPDTDRLSSVLNADTIFDWIIITS 110 (241)
Q Consensus 40 ~~~~~~~~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~------~~~~--~~~~~~l~~~l~~l~~~d~IiFTS 110 (241)
+.......+.+|+||||.... -+..+.+.|.+.|++|..+--- +... +.+.+.+.+.+ ..+|.||.+.
T Consensus 9 ~~~~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~Dl~d~~~~~~~~---~~~d~vih~A 85 (347)
T 4id9_A 9 HHSSGLVPRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSGTGGEEVVGSLEDGQALSDAI---MGVSAVLHLG 85 (347)
T ss_dssp ------------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSEEESCTTCHHHHHHHH---TTCSEEEECC
T ss_pred CCCCcccccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCCCccEEecCcCCHHHHHHHH---hCCCEEEECC
Confidence 345566778899999999865 4678899999999998765211 1111 22344555555 4789999764
No 163
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=66.18 E-value=7.4 Score=32.50 Aligned_cols=60 Identities=17% Similarity=0.004 Sum_probs=39.7
Q ss_pred cEEEEEccCCC--c------hhHHHHHHhCCCeeeEeeeeeeecCCCC------hHHHHHHcCCCCEEEEECCc
Q 026235 179 CTVLYPASAKA--S------NEIEEGLSNRGFEVVRLNTYTTEPVHHV------DQTVLKQALSIPVVAVASPS 238 (241)
Q Consensus 179 ~~iL~~~g~~~--~------~~L~~~L~~~G~~V~~~~vY~~~~~~~~------~~~~~~~l~~id~IvFtSps 238 (241)
.+||++.|... + +.+.+.|++.|++|..+.+++.-..... ..++.+.+...|+|||.||.
T Consensus 35 mkIliI~GS~r~~s~t~~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD~iI~~sP~ 108 (247)
T 2q62_A 35 PRILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVWVSPE 108 (247)
T ss_dssp CEEEEEECCCCSSCHHHHHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCSEEEEEEEC
T ss_pred CeEEEEEccCCCCCHHHHHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCCEEEEEeCC
Confidence 58999888753 1 2456677778999988888764211110 23445556789999999984
No 164
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=66.16 E-value=7.1 Score=30.94 Aligned_cols=61 Identities=10% Similarity=0.143 Sum_probs=39.6
Q ss_pred HHHHHHHHHCC--CcEEEeceE--EEe-eCCCc--------------------------hHHHHHHhcCCCccEEEEeC-
Q 026235 63 GKLIKALAKHR--IDCLELPLI--QHA-QGPDT--------------------------DRLSSVLNADTIFDWIIITS- 110 (241)
Q Consensus 63 ~~l~~~L~~~G--~~v~~~P~~--~~~-~~~~~--------------------------~~l~~~l~~l~~~d~IiFTS- 110 (241)
+.+.+.+++.| .++..+.++ +.. +.-+. +.+.+.++.+..+|.|||.|
T Consensus 24 ~~~~~~~~~~g~~~~v~~~dL~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iv~~~P 103 (208)
T 2hpv_A 24 ETFLASYRETNPSDEIEILDVYAPETNMPEIDEELLSAWGALRAGAAFETLSENQQQKVARFNELTDQFLSADKVVIANP 103 (208)
T ss_dssp HHHHHHHHHHCTTSEEEEEETTCGGGCCCCCCHHHHHHHHHHHHTCCGGGSCHHHHHHHHHHHHHHHHHHHCSEEEEEEE
T ss_pred HHHHHHHHHhCCCCeEEEeeCCcccCCCCcCCHHHHHhhcCcccccccccCCHHHHhhHHHHHHHHHHHHhCCEEEEEec
Confidence 34556677766 888888777 543 11110 12333444567899999999
Q ss_pred ------HHHHHHHHHHHHh
Q 026235 111 ------PEAGSVFLEAWKE 123 (241)
Q Consensus 111 ------~~aV~~f~~~l~~ 123 (241)
+..++.|++.+..
T Consensus 104 ~y~~~~pa~lK~~iD~~~~ 122 (208)
T 2hpv_A 104 MWNLNVPTRLKAWVDTINV 122 (208)
T ss_dssp CBTTBCCHHHHHHHHHHCC
T ss_pred cccCCCCHHHHHHHHHHhc
Confidence 5789999998753
No 165
>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Probab=66.13 E-value=31 Score=27.46 Aligned_cols=34 Identities=15% Similarity=0.112 Sum_probs=26.7
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEe
Q 026235 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (241)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (241)
.++.|++||||..... ...+.+.|.+.|++|..+
T Consensus 3 ~~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~ 37 (244)
T 3d3w_A 3 LFLAGRRVLVTGAGKGIGRGTVQALHATGARVVAV 37 (244)
T ss_dssp CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred cccCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEE
Confidence 3577899999988653 677888999999987653
No 166
>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2
Probab=65.89 E-value=25 Score=28.28 Aligned_cols=33 Identities=9% Similarity=0.079 Sum_probs=26.8
Q ss_pred CCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEe
Q 026235 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (241)
Q Consensus 47 ~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (241)
.+.||+||||..... ...+++.|.+.|++|...
T Consensus 3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~ 36 (246)
T 2ag5_A 3 RLDGKVIILTAAAQGIGQAAALAFAREGAKVIAT 36 (246)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE
Confidence 467899999988754 678899999999987754
No 167
>3l5o_A Uncharacterized protein from DUF364 family; RARE metals, siderophores, adenosyl binding site; 2.01A {Desulfitobacterium hafniense}
Probab=65.73 E-value=10 Score=32.42 Aligned_cols=112 Identities=18% Similarity=0.069 Sum_probs=70.8
Q ss_pred CCCCCeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCC--chHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhc
Q 026235 47 SNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA 124 (241)
Q Consensus 47 ~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~--~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~ 124 (241)
...|++|.+..--+ +.+.+.+.++++..+ +..|-+. .+...+.+ +...|+|+.|...=+..-++.+-+.
T Consensus 138 ~~~g~kV~vIG~fP----~i~~~~~~~~~l~V~---E~~p~~g~~p~~~~~~~--lp~~D~viiTgstlvN~Tl~~lL~~ 208 (270)
T 3l5o_A 138 EVKGKKVGVVGHFP----HLESLLEPICDLSIL---EWSPEEGDYPLPASEFI--LPECDYVYITCASVVDKTLPRLLEL 208 (270)
T ss_dssp TTTTSEEEEESCCT----THHHHHTTTSEEEEE---ESSCCTTCEEGGGHHHH--GGGCSEEEEETHHHHHTCHHHHHHH
T ss_pred ccCCCEEEEECCch----hHHHHHhcCCCEEEE---ECCCCCCCCChhHHHHh--hccCCEEEEEeehhhcCCHHHHHhh
Confidence 44689999987642 344556667665543 3343322 12222222 4789999999999988877776655
Q ss_pred CCCCcEEEEeCHHHHH--HHHHhhhccCCCCceeecCCCCCHHHHHHHhhh
Q 026235 125 GTPNVRIGVVGAGTAS--IFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (241)
Q Consensus 125 ~~~~~~i~aIG~~Ta~--~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~ 173 (241)
..+...++.+||.|-- .|-++ |++..---...+.+.+.+.+.+
T Consensus 209 ~~~a~~vvl~GPStp~~P~lf~~------Gv~~laG~~V~d~~~~~~~i~~ 253 (270)
T 3l5o_A 209 SRNARRITLVGPGTPLAPVLFEH------GLQELSGFMVKDNARAFRIVAG 253 (270)
T ss_dssp TTTSSEEEEESTTCCCCGGGGGT------TCSEEEEEEESCHHHHHHHHTT
T ss_pred CCCCCEEEEECCCchhhHHHHhc------CcCEEEEEEEcCHHHHHHHHhc
Confidence 4456678899998632 13345 8876332234578888888864
No 168
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=65.56 E-value=4.4 Score=29.59 Aligned_cols=61 Identities=16% Similarity=0.269 Sum_probs=38.6
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHH-------H--HHHHHHHHHhcCCCCcEEEE
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE-------A--GSVFLEAWKEAGTPNVRIGV 133 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~-------a--V~~f~~~l~~~~~~~~~i~a 133 (241)
+.+++.+++.|+++..+.+ .+.+ . .++.++|.|||-||. . ++.|++.+.. .+.+.++++
T Consensus 18 ~~i~~~l~~~g~~v~~~~~------~~~~-~----~~l~~~d~vi~g~p~y~~~~~~~~~~~~fl~~l~~-~l~~k~~~~ 85 (137)
T 2fz5_A 18 NEIEAAVKAAGADVESVRF------EDTN-V----DDVASKDVILLGCPAMGSEELEDSVVEPFFTDLAP-KLKGKKVGL 85 (137)
T ss_dssp HHHHHHHHHTTCCEEEEET------TSCC-H----HHHHTCSEEEEECCCBTTTBCCHHHHHHHHHHHGG-GCSSCEEEE
T ss_pred HHHHHHHHhCCCeEEEEEc------ccCC-H----HHHhcCCEEEEEccccCCCCCCHHHHHHHHHHhhh-hcCCCEEEE
Confidence 3444556667888765432 2211 1 123578999998876 2 8888887754 356778887
Q ss_pred eC
Q 026235 134 VG 135 (241)
Q Consensus 134 IG 135 (241)
+|
T Consensus 86 ~~ 87 (137)
T 2fz5_A 86 FG 87 (137)
T ss_dssp EE
T ss_pred EE
Confidence 77
No 169
>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}
Probab=65.21 E-value=27 Score=30.56 Aligned_cols=163 Identities=16% Similarity=0.152 Sum_probs=87.1
Q ss_pred CCeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHH-HHHHHHHHhcCCCC
Q 026235 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG-SVFLEAWKEAGTPN 128 (241)
Q Consensus 50 g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV-~~f~~~l~~~~~~~ 128 (241)
.++||++++-. +...+.|++ ++++...+- ..+.+++ +..+.++|.++..+...+ +.+++.+ ++
T Consensus 30 ~~~vl~~~~~~--~~~~~~L~~-~~~v~~~~~-----~~~~~~~---~~~~~~~d~li~~~~~~i~~~~l~~~-----p~ 93 (340)
T 4dgs_A 30 KPDLLLVEPMM--PFVMDELQR-NYSVHRLYQ-----AADRPAL---EAALPSIRAVATGGGAGLSNEWMEKL-----PS 93 (340)
T ss_dssp ---CEECSCCC--HHHHHTHHH-HSCCEETTC-----GGGHHHH---HHHGGGCCEEEEETTTCBCHHHHHHC-----SS
T ss_pred CCEEEEECCCC--HHHHHHHhc-CCcEEEeCC-----CCCHHHH---HHHhCCcEEEEEcCCCCCCHHHHhhC-----CC
Confidence 46799998863 456667755 456553321 1122333 333478999987654333 2233332 33
Q ss_pred cEEEE-eCHHH----HHHHHHhhhccCCCCceeecCCCCCHHHHHHHhh-------h-----------------------
Q 026235 129 VRIGV-VGAGT----ASIFEEVIQSSKCSLDVAFSPSKATGKILASELP-------K----------------------- 173 (241)
Q Consensus 129 ~~i~a-IG~~T----a~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~-------~----------------------- 173 (241)
+++++ .|-.+ .+++++. |+.+.-.| ....+.++|... +
T Consensus 94 Lk~I~~~g~G~d~id~~~a~~~------gI~V~n~p-g~~~~~vAE~a~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~ 166 (340)
T 4dgs_A 94 LGIIAINGVGTDKVDLARARRR------NIDVTTTP-GVLADDVADLGIALMLAVLRRVGDGDRLVREGRWAAGEQLPLG 166 (340)
T ss_dssp CCEEEEESSCCTTBCHHHHHHT------TCEEECCC-SSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCC------CCC
T ss_pred CEEEEECCCCccccCHHHHHhC------CEEEEECC-CCCcchHHHHHHHHHHHHHhChHHHHHHHhcCCcccccCcCcc
Confidence 44433 33322 4677888 99886666 355555544311 0
Q ss_pred CCCCccEEEEEccCCCchhHHHHHHhCCCeeeEeeeeeeecCCCCh----HHHHHHcCCCCEEEEECCc
Q 026235 174 NGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVD----QTVLKQALSIPVVAVASPS 238 (241)
Q Consensus 174 ~~~~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~----~~~~~~l~~id~IvFtSps 238 (241)
....|+++.++.-..-...+...|+..|.+| .+|.+.+..... ..+.+.+.+.|+|++.-|.
T Consensus 167 ~~l~gktiGIIGlG~IG~~vA~~l~~~G~~V---~~~dr~~~~~~~~~~~~sl~ell~~aDvVil~vP~ 232 (340)
T 4dgs_A 167 HSPKGKRIGVLGLGQIGRALASRAEAFGMSV---RYWNRSTLSGVDWIAHQSPVDLARDSDVLAVCVAA 232 (340)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHTTTCEE---EEECSSCCTTSCCEECSSHHHHHHTCSEEEECC--
T ss_pred ccccCCEEEEECCCHHHHHHHHHHHHCCCEE---EEEcCCcccccCceecCCHHHHHhcCCEEEEeCCC
Confidence 0123567777755445567888999888765 455544332111 1233334688999988774
No 170
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=65.15 E-value=6.9 Score=30.13 Aligned_cols=19 Identities=16% Similarity=0.459 Sum_probs=14.1
Q ss_pred HHHHHHcCCCCEEEEECCc
Q 026235 220 QTVLKQALSIPVVAVASPS 238 (241)
Q Consensus 220 ~~~~~~l~~id~IvFtSps 238 (241)
.++.+.+...|+|+|.||.
T Consensus 63 ~~~~~~l~~aD~ii~~~P~ 81 (184)
T 1rli_A 63 DSIIERILQCHILIFATPI 81 (184)
T ss_dssp HHHHHHHHTCSEEEEEEEC
T ss_pred HHHHHHHHhCCEEEEEeCc
Confidence 3445556789999999984
No 171
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=65.06 E-value=34 Score=24.24 Aligned_cols=107 Identities=15% Similarity=0.146 Sum_probs=64.6
Q ss_pred CCeEEEeCCCC-ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeC---HHHHHHHHHHHHhcC
Q 026235 50 NPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS---PEAGSVFLEAWKEAG 125 (241)
Q Consensus 50 g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS---~~aV~~f~~~l~~~~ 125 (241)
+++||+.-... ....+...|++.|+++... .+..+..+.+. ...+|.|+.-- .++.+ ++..+.+.
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~l~-~~~~dlvi~d~~~~~~g~~-~~~~l~~~- 72 (142)
T 2qxy_A 4 TPTVMVVDESRITFLAVKNALEKDGFNVIWA--------KNEQEAFTFLR-REKIDLVFVDVFEGEESLN-LIRRIREE- 72 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHGGGTCEEEEE--------SSHHHHHHHHT-TSCCSEEEEECTTTHHHHH-HHHHHHHH-
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEE--------CCHHHHHHHHh-ccCCCEEEEeCCCCCcHHH-HHHHHHHH-
Confidence 46788887654 3566788888888765422 23344445553 35789988753 34443 33444443
Q ss_pred CCCcEEEEeCHH----HHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhC
Q 026235 126 TPNVRIGVVGAG----TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (241)
Q Consensus 126 ~~~~~i~aIG~~----Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~ 174 (241)
.++++++.+... ....+.+. |.. ++..+..+.+.|.+.+...
T Consensus 73 ~~~~pii~ls~~~~~~~~~~~~~~------g~~-~~l~kP~~~~~l~~~i~~~ 118 (142)
T 2qxy_A 73 FPDTKVAVLSAYVDKDLIINSVKA------GAV-DYILKPFRLDYLLERVKKI 118 (142)
T ss_dssp CTTCEEEEEESCCCHHHHHHHHHH------TCS-CEEESSCCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHC------Ccc-eeEeCCCCHHHHHHHHHHH
Confidence 246777666432 23334455 776 4667778999998888653
No 172
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=64.90 E-value=19 Score=31.30 Aligned_cols=79 Identities=15% Similarity=0.031 Sum_probs=46.3
Q ss_pred CCeEEEeC-CCCC-h----HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHH-------HHHH
Q 026235 50 NPKVVVTR-ERGK-N----GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE-------AGSV 116 (241)
Q Consensus 50 g~~VLitR-~~~~-~----~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~-------aV~~ 116 (241)
+++|++.- +..+ . +.+++.+.+.|+++....+ .. .+...+. ..+.++|.|||.||. .++.
T Consensus 252 ~~kv~i~y~S~~Gnt~~lA~~i~~~l~~~g~~v~~~~~---~~-~~~~~~~---~~~~~~d~ii~gsp~~~~~~~~~~~~ 324 (402)
T 1e5d_A 252 TNKVVIFYDSMWHSTEKMARVLAESFRDEGCTVKLMWC---KA-CHHSQIM---SEISDAGAVIVGSPTHNNGILPYVAG 324 (402)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEET---TT-SCHHHHH---HHHHTCSEEEEECCCBTTBCCHHHHH
T ss_pred CCcEEEEEECCChhHHHHHHHHHHHHHhCCCeEEEEEC---CC-CCHHHHH---HHHHHCCEEEEECCccCCCchHHHHH
Confidence 46666553 3333 2 3344556666766543322 11 1222232 234689999999962 5888
Q ss_pred HHHHHHhcCCCCcEEEEeC
Q 026235 117 FLEAWKEAGTPNVRIGVVG 135 (241)
Q Consensus 117 f~~~l~~~~~~~~~i~aIG 135 (241)
|++.+....+.+.+++++|
T Consensus 325 ~l~~l~~~~l~~k~~~~f~ 343 (402)
T 1e5d_A 325 TLQYIKGLRPQNKIGGAFG 343 (402)
T ss_dssp HHHHHHHTCCCSCEEEEEE
T ss_pred HHHHhhhcccCCCEEEEEE
Confidence 8888776556677777776
No 173
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=64.81 E-value=1.6 Score=35.25 Aligned_cols=60 Identities=10% Similarity=-0.025 Sum_probs=41.6
Q ss_pred hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCH-------HHHHHHHHHHH
Q 026235 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP-------EAGSVFLEAWK 122 (241)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~-------~aV~~f~~~l~ 122 (241)
+..+.+.+++.|.++..+.+++..+.. ...+....+.+...|.|||.|| ..++.|++.+-
T Consensus 19 ~~~l~~~~~~~g~ev~~~dL~~~~~~~-~~dv~~~~~~l~~AD~iv~~~P~y~~~~pa~lK~~iDrv~ 85 (192)
T 3f2v_A 19 HKHWSDAVRQHTDRFTVHELYAVYPQG-KIDVAAEQKLIETHDSLVWQFPIYWFNCPPLLKQWLDEVL 85 (192)
T ss_dssp HHHHHHHHTTCTTTEEEEEHHHHCTTC-CCCHHHHHHHHHTSSSEEEEEECBTTBCCHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCCeEEEEEchhcCCCC-chhHHHHHHHHHhCCEEEEEcChhhcCCCHHHHHHHHHHh
Confidence 445666777789999988888765421 2234444455678999999985 67788888764
No 174
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=64.59 E-value=17 Score=31.82 Aligned_cols=78 Identities=10% Similarity=0.026 Sum_probs=49.8
Q ss_pred CCCCeEEEeCCCCChHHHHHHHHHCCCcEEEeceEE-----------E--eeCCCchHHHHHHhcCCCccEEEEe-CHHH
Q 026235 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQ-----------H--AQGPDTDRLSSVLNADTIFDWIIIT-SPEA 113 (241)
Q Consensus 48 l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~-----------~--~~~~~~~~l~~~l~~l~~~d~IiFT-S~~a 113 (241)
+.+++|||+........+.+.+++.|+++..+.... . .+..+.+.+.+.+ ...++|+|+.. +-..
T Consensus 5 ~~~~~ilI~g~g~~~~~~~~a~~~~G~~~v~v~~~~~~~~~~~~ad~~~~~~~~d~~~l~~~~-~~~~~d~v~~~~~~~~ 83 (403)
T 4dim_A 5 YDNKRLLILGAGRGQLGLYKAAKELGIHTIAGTMPNAHKPCLNLADEISYMDISNPDEVEQKV-KDLNLDGAATCCLDTG 83 (403)
T ss_dssp -CCCEEEEECCCGGGHHHHHHHHHHTCEEEEEECSSCCHHHHHHCSEEEECCTTCHHHHHHHT-TTSCCSEEECCSCSTT
T ss_pred cCCCEEEEECCcHhHHHHHHHHHHCCCEEEEEcCCCCCCcchhhCCeEEEecCCCHHHHHHHH-HHcCCCEEEeCCcchh
Confidence 457899999887667889999999999988763211 1 1122344555554 23578998863 4455
Q ss_pred HHHHHHHHHhcCC
Q 026235 114 GSVFLEAWKEAGT 126 (241)
Q Consensus 114 V~~f~~~l~~~~~ 126 (241)
+..+...++..++
T Consensus 84 ~~~~a~~~~~~gl 96 (403)
T 4dim_A 84 IVSLARICDKENL 96 (403)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCc
Confidence 5566665555553
No 175
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=64.30 E-value=38 Score=24.49 Aligned_cols=113 Identities=12% Similarity=0.115 Sum_probs=65.5
Q ss_pred CCCCCeEEEeCCCC-ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEe----CHHHHHHHHHHH
Q 026235 47 SNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAW 121 (241)
Q Consensus 47 ~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFT----S~~aV~~f~~~l 121 (241)
++.+.+||+.-... ....+...|+..|+++... .+..+....+. -..+|.|++- ..++.+. +..+
T Consensus 4 ~~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~l~-~~~~dlvi~d~~l~~~~g~~~-~~~l 73 (154)
T 2rjn_A 4 NYKNYTVMLVDDEQPILNSLKRLIKRLGCNIITF--------TSPLDALEALK-GTSVQLVISDMRMPEMGGEVF-LEQV 73 (154)
T ss_dssp CCSCCEEEEECSCHHHHHHHHHHHHTTTCEEEEE--------SCHHHHHHHHT-TSCCSEEEEESSCSSSCHHHH-HHHH
T ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEe--------CCHHHHHHHHh-cCCCCEEEEecCCCCCCHHHH-HHHH
Confidence 35578899987764 3566788888888765422 23344444553 3568998874 2245443 3444
Q ss_pred HhcCCCCcEEEEeCH-HHHHHHHHhhhccCCC-CceeecCCCCCHHHHHHHhhhC
Q 026235 122 KEAGTPNVRIGVVGA-GTASIFEEVIQSSKCS-LDVAFSPSKATGKILASELPKN 174 (241)
Q Consensus 122 ~~~~~~~~~i~aIG~-~Ta~~L~~~~~~~~~G-i~~~~~p~~~t~e~L~~~l~~~ 174 (241)
.+.. +.++++.+.. ...+...+.++. | .. ++..+..+.+.|.+.|...
T Consensus 74 ~~~~-~~~~ii~ls~~~~~~~~~~~~~~---g~~~-~~l~kP~~~~~L~~~i~~~ 123 (154)
T 2rjn_A 74 AKSY-PDIERVVISGYADAQATIDAVNR---GKIS-RFLLKPWEDEDVFKVVEKG 123 (154)
T ss_dssp HHHC-TTSEEEEEECGGGHHHHHHHHHT---TCCS-EEEESSCCHHHHHHHHHHH
T ss_pred HHhC-CCCcEEEEecCCCHHHHHHHHhc---cchh-eeeeCCCCHHHHHHHHHHH
Confidence 4432 4667666543 332332222111 5 54 4667778999998888653
No 176
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=64.25 E-value=34 Score=23.89 Aligned_cols=110 Identities=15% Similarity=0.092 Sum_probs=60.1
Q ss_pred CCeEEEeCCCCC-hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeC----HHHHHHHHHHHHhc
Q 026235 50 NPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVFLEAWKEA 124 (241)
Q Consensus 50 g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS----~~aV~~f~~~l~~~ 124 (241)
.++||+.-.... ...+...|+ .|+++... .+..+..+.+.. ..+|.|++-- .++.+. ...+.+.
T Consensus 4 ~~~ilivdd~~~~~~~l~~~l~-~~~~v~~~--------~~~~~a~~~l~~-~~~dlvi~d~~l~~~~g~~~-~~~l~~~ 72 (133)
T 3nhm_A 4 KPKVLIVENSWTMRETLRLLLS-GEFDCTTA--------ADGASGLQQALA-HPPDVLISDVNMDGMDGYAL-CGHFRSE 72 (133)
T ss_dssp -CEEEEECSCHHHHHHHHHHHT-TTSEEEEE--------SSHHHHHHHHHH-SCCSEEEECSSCSSSCHHHH-HHHHHHS
T ss_pred CCEEEEEcCCHHHHHHHHHHHh-CCcEEEEE--------CCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHH-HHHHHhC
Confidence 468998877643 445666666 67664422 333444444433 5689888742 245443 3445443
Q ss_pred C-CCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhC
Q 026235 125 G-TPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (241)
Q Consensus 125 ~-~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~ 174 (241)
. .++++++.+.........+.+ ..|.. ++..+..+.+.|.+.|...
T Consensus 73 ~~~~~~pii~~s~~~~~~~~~~~---~~g~~-~~l~KP~~~~~l~~~i~~~ 119 (133)
T 3nhm_A 73 PTLKHIPVIFVSGYAPRTEGPAD---QPVPD-AYLVKPVKPPVLIAQLHAL 119 (133)
T ss_dssp TTTTTCCEEEEESCCC-----TT---SCCCS-EEEESSCCHHHHHHHHHHH
T ss_pred CccCCCCEEEEeCCCcHhHHHHh---hcCCc-eEEeccCCHHHHHHHHHHH
Confidence 2 346777666543222222221 11654 4777788999999888654
No 177
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Probab=64.15 E-value=15 Score=29.58 Aligned_cols=112 Identities=12% Similarity=0.108 Sum_probs=60.9
Q ss_pred CCeEEEeCCCCChHHHHHHHHHCCCcEEEece-----------EEEeeCC--CchHHHHHHhcCCCccEEEEeCHHHHHH
Q 026235 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPL-----------IQHAQGP--DTDRLSSVLNADTIFDWIIITSPEAGSV 116 (241)
Q Consensus 50 g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~-----------~~~~~~~--~~~~l~~~l~~l~~~d~IiFTS~~aV~~ 116 (241)
.++|+|.....-...+++.|.+.|. +..+-- +.....+ +.+.+.++ .+...|.|+.+.++.-.+
T Consensus 9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~~~~~~i~gd~~~~~~l~~a--~i~~ad~vi~~~~~d~~n 85 (234)
T 2aef_A 9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKA--NVRGARAVIVDLESDSET 85 (234)
T ss_dssp -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHHHTTCEEEESCTTCHHHHHHT--TCTTCSEEEECCSCHHHH
T ss_pred CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHHhcCCeEEEcCCCCHHHHHhc--CcchhcEEEEcCCCcHHH
Confidence 3567777665456667777777665 443310 1111111 12222222 367899999988765333
Q ss_pred HH--HHHHhcCCCCcEEEEe--CHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHh
Q 026235 117 FL--EAWKEAGTPNVRIGVV--GAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASEL 171 (241)
Q Consensus 117 f~--~~l~~~~~~~~~i~aI--G~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l 171 (241)
.. ..+++.+ .+.++++. .+...+.+++. |....+.|....+..|++.+
T Consensus 86 ~~~~~~a~~~~-~~~~iia~~~~~~~~~~l~~~------G~~~vi~p~~~~a~~l~~~~ 137 (234)
T 2aef_A 86 IHCILGIRKID-ESVRIIAEAERYENIEQLRMA------GADQVISPFVISGRLMSRSI 137 (234)
T ss_dssp HHHHHHHHHHC-SSSEEEEECSSGGGHHHHHHH------TCSEEECHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHC-CCCeEEEEECCHhHHHHHHHC------CCCEEECHHHHHHHHHHHHH
Confidence 32 2333333 34456554 56677888888 99876766544444444433
No 178
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0
Probab=64.03 E-value=30 Score=27.74 Aligned_cols=34 Identities=9% Similarity=0.075 Sum_probs=27.8
Q ss_pred CCCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEE
Q 026235 45 SASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLE 78 (241)
Q Consensus 45 ~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~ 78 (241)
..++.+++||||..... ...+++.|.++|++|..
T Consensus 9 ~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~ 43 (249)
T 3f9i_A 9 MIDLTGKTSLITGASSGIGSAIARLLHKLGSKVII 43 (249)
T ss_dssp CCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEE
T ss_pred cccCCCCEEEEECCCChHHHHHHHHHHHCCCEEEE
Confidence 45678999999998764 67789999999998764
No 179
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=64.00 E-value=54 Score=26.17 Aligned_cols=109 Identities=11% Similarity=0.060 Sum_probs=64.7
Q ss_pred CCCCCeEEEeCCCC-ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEe----CHHHHHHHHHHH
Q 026235 47 SNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAW 121 (241)
Q Consensus 47 ~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFT----S~~aV~~f~~~l 121 (241)
.....+|||.-... ....+...|+..|+++... .+..+..+.+.. ..+|.|+.- ..++.+.+ ..+
T Consensus 20 ~~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~al~~~~~-~~~dlvllD~~lp~~~g~~~~-~~l 89 (250)
T 3r0j_A 20 TTPEARVLVVDDEANIVELLSVSLKFQGFEVYTA--------TNGAQALDRARE-TRPDAVILDVXMPGMDGFGVL-RRL 89 (250)
T ss_dssp CCSSCEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------SSHHHHHHHHHH-HCCSEEEEESCCSSSCHHHHH-HHH
T ss_pred CCCCceEEEEECCHHHHHHHHHHHHHCCCEEEEE--------CCHHHHHHHHHh-CCCCEEEEeCCCCCCCHHHHH-HHH
Confidence 34467899998764 3567888898889776432 233333344422 468988874 23455543 334
Q ss_pred HhcCCCCcEEEEeCH-HHHHH---HHHhhhccCCCCceeecCCCCCHHHHHHHhhh
Q 026235 122 KEAGTPNVRIGVVGA-GTASI---FEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (241)
Q Consensus 122 ~~~~~~~~~i~aIG~-~Ta~~---L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~ 173 (241)
.+.. ++++++.+.. ...+. ..+. |.. ++..+..+.+.|...|..
T Consensus 90 r~~~-~~~~ii~lt~~~~~~~~~~~~~~------Ga~-~yl~Kp~~~~~L~~~i~~ 137 (250)
T 3r0j_A 90 RADG-IDAPALFLTARDSLQDKIAGLTL------GGD-DYVTKPFSLEEVVARLRV 137 (250)
T ss_dssp HHTT-CCCCEEEEECSTTHHHHHHHHTS------TTC-EEEESSCCHHHHHHHHHH
T ss_pred HhcC-CCCCEEEEECCCCHHHHHHHHHc------CCc-EEEeCCCCHHHHHHHHHH
Confidence 4432 3455555433 22222 2344 765 577788899999888754
No 180
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=63.97 E-value=30 Score=27.56 Aligned_cols=55 Identities=13% Similarity=-0.008 Sum_probs=33.5
Q ss_pred EEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEccCCCchh
Q 026235 130 RIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNE 192 (241)
Q Consensus 130 ~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~~~~~~iL~~~g~~~~~~ 192 (241)
-|++-| .|++.|++.. ++.+.-+ ..+.-+++++|.+....+.++.++.....-+.
T Consensus 54 VIISRG-gta~~lr~~~-----~iPVV~I--~~s~~Dil~al~~a~~~~~kIavvg~~~~~~~ 108 (196)
T 2q5c_A 54 AIISRG-ATSDYIKKSV-----SIPSISI--KVTRFDTMRAVYNAKRFGNELALIAYKHSIVD 108 (196)
T ss_dssp EEEEEH-HHHHHHHTTC-----SSCEEEE--CCCHHHHHHHHHHHGGGCSEEEEEEESSCSSC
T ss_pred EEEECC-hHHHHHHHhC-----CCCEEEE--cCCHhHHHHHHHHHHhhCCcEEEEeCcchhhH
Confidence 445555 6788888763 6655433 46777787777654434457777766554433
No 181
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=63.52 E-value=12 Score=31.79 Aligned_cols=153 Identities=11% Similarity=0.015 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcC--CCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD--TIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l--~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~ 140 (241)
..+.+.++++|+++..... ..+.+...+.++.+ ..+|+||+.+...-....+.+.+ .+++++.+|..
T Consensus 82 ~gi~~~a~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~~~~~~l~~---~~iPvV~~~~~--- 150 (339)
T 3h5o_A 82 TGIETVLDAAGYQMLIGNS-----HYDAGQELQLLRAYLQHRPDGVLITGLSHAEPFERILSQ---HALPVVYMMDL--- 150 (339)
T ss_dssp HHHHHHHHHTTCEEEEEEC-----TTCHHHHHHHHHHHHTTCCSEEEEECSCCCTTHHHHHHH---TTCCEEEEESC---
T ss_pred HHHHHHHHHCCCEEEEEeC-----CCChHHHHHHHHHHHcCCCCEEEEeCCCCCHHHHHHHhc---CCCCEEEEeec---
Q ss_pred HHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEccC------CCchhHHHHHHhCCC-eeeEeeeeeee
Q 026235 141 IFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASA------KASNEIEEGLSNRGF-EVVRLNTYTTE 213 (241)
Q Consensus 141 ~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~~~~~~iL~~~g~------~~~~~L~~~L~~~G~-~V~~~~vY~~~ 213 (241)
... +......-....+..+++.|.+... ++|.++.+. ....-+.+.|++.|. ......++...
T Consensus 151 --~~~------~~~~V~~D~~~~~~~a~~~L~~~G~--~~I~~i~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~ 220 (339)
T 3h5o_A 151 --ADD------GRCCVGFSQEDAGAAITRHLLSRGK--RRIGFLGAQLDERVMKRLDGYRAALDAADCRDAGLEWLDPQP 220 (339)
T ss_dssp --CSS------SCCEEECCHHHHHHHHHHHHHHTTC--CSEEEEEESCCHHHHHHHHHHHHHHHHTTCCCGGGEEEECSC
T ss_pred --CCC------CCeEEEECHHHHHHHHHHHHHHCCC--CeEEEEeCCCCccHHHHHHHHHHHHHHCCCCCCChheEecCC
Q ss_pred cCCCChHHHHHHc----CCCCEEEEEC
Q 026235 214 PVHHVDQTVLKQA----LSIPVVAVAS 236 (241)
Q Consensus 214 ~~~~~~~~~~~~l----~~id~IvFtS 236 (241)
.......+..+.+ ..+|+|+..+
T Consensus 221 ~~~~~~~~~~~~ll~~~~~~~ai~~~n 247 (339)
T 3h5o_A 221 SSMQMGADMLDRALAERPDCDALFCCN 247 (339)
T ss_dssp CCHHHHHHHHHHHHHHCTTCCEEEESS
T ss_pred CCHHHHHHHHHHHHcCCCCCcEEEECC
No 182
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1
Probab=63.51 E-value=32 Score=29.79 Aligned_cols=167 Identities=12% Similarity=0.067 Sum_probs=86.6
Q ss_pred CeEEEeCCCCChHHHHHHH-HHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHH-HHHHHHHHhcCCCC
Q 026235 51 PKVVVTRERGKNGKLIKAL-AKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG-SVFLEAWKEAGTPN 128 (241)
Q Consensus 51 ~~VLitR~~~~~~~l~~~L-~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV-~~f~~~l~~~~~~~ 128 (241)
|+|+++..........+.| +..|+++...+-. . .++ ..+.+.++|.++..+...+ +.+++.+.+.+
T Consensus 1 Mkil~~~~~~~~~~~~~~l~~~~~~~v~~~~~~----~--~~~---~~~~~~~~d~~i~~~~~~~~~~~l~~~~~~~--- 68 (333)
T 1dxy_A 1 MKIIAYGARVDEIQYFKQWAKDTGNTLEYHTEF----L--DEN---TVEWAKGFDGINSLQTTPYAAGVFEKMHAYG--- 68 (333)
T ss_dssp CEEEECSCCTTTHHHHHHHHHHHCCEEEECSSC----C--CTT---GGGGGTTCSEEEECCSSCBCHHHHHHHHHTT---
T ss_pred CEEEEEeccccCHHHHHHHHHhCCeEEEEcCCC----C--hHH---HHHHhcCCeEEEEcCCCCCCHHHHHhCcccC---
Confidence 4688865433334444444 4457776544321 1 111 2234578999887542222 33445554422
Q ss_pred cEEEE---eCHH--HHHHHHHhhhccCCCCceeecCCCCCHHHHHHHh----h---h----------------------C
Q 026235 129 VRIGV---VGAG--TASIFEEVIQSSKCSLDVAFSPSKATGKILASEL----P---K----------------------N 174 (241)
Q Consensus 129 ~~i~a---IG~~--Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l----~---~----------------------~ 174 (241)
+++++ +|-- -.+++++. |+.+.-+|. ++.+.++|.. . + .
T Consensus 69 Lk~I~~~~~G~d~id~~~~~~~------gI~v~n~p~-~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~ 141 (333)
T 1dxy_A 69 IKFLTIRNVGTDNIDMTAMKQY------GIRLSNVPA-YSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGK 141 (333)
T ss_dssp CCEEEESSSCCTTBCHHHHHHT------TCEEECCTT-SCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHTCCCCC
T ss_pred ceEEEEcCcccCccCHHHHHhC------CCEEEeCCC-CCchHHHHHHHHHHHHHhhhHHHHHHHHHcCCcccccCCCcc
Confidence 33332 2311 13567788 998766653 4544443321 1 0 0
Q ss_pred CCCccEEEEEccCCCchhHHHHHHhCCCeeeEeeeeeeecCCCC-----hHHHHHHcCCCCEEEEECCcc
Q 026235 175 GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHV-----DQTVLKQALSIPVVAVASPSA 239 (241)
Q Consensus 175 ~~~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~-----~~~~~~~l~~id~IvFtSps~ 239 (241)
...++++.++.-..-...+.+.|+..|++|. +|.+.+.... ...+.+.+...|+|++.-|.+
T Consensus 142 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~---~~d~~~~~~~~~~~~~~~l~ell~~aDvV~~~~P~~ 208 (333)
T 1dxy_A 142 ELGQQTVGVMGTGHIGQVAIKLFKGFGAKVI---AYDPYPMKGDHPDFDYVSLEDLFKQSDVIDLHVPGI 208 (333)
T ss_dssp CGGGSEEEEECCSHHHHHHHHHHHHTTCEEE---EECSSCCSSCCTTCEECCHHHHHHHCSEEEECCCCC
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCEEE---EECCCcchhhHhccccCCHHHHHhcCCEEEEcCCCc
Confidence 1246678887555455678889999998765 4443332110 001222235789999887753
No 183
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=63.43 E-value=28 Score=24.61 Aligned_cols=116 Identities=10% Similarity=0.051 Sum_probs=63.8
Q ss_pred ccCCCCCCCeEEEeCCCC-ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeC----HHHHHHH
Q 026235 43 SASASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVF 117 (241)
Q Consensus 43 ~~~~~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS----~~aV~~f 117 (241)
....+..+.+||+.-... ....+...|++.|+++... .+..+..+.+.....+|.|+.-- .++.+ +
T Consensus 8 ~~~~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~al~~l~~~~~~dlvilD~~l~~~~g~~-~ 78 (138)
T 2b4a_A 8 HHHHHMQPFRVTLVEDEPSHATLIQYHLNQLGAEVTVH--------PSGSAFFQHRSQLSTCDLLIVSDQLVDLSIFS-L 78 (138)
T ss_dssp ------CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------SSHHHHHHTGGGGGSCSEEEEETTCTTSCHHH-H
T ss_pred hccCCCCCCeEEEECCCHHHHHHHHHHHHHcCCEEEEe--------CCHHHHHHHHHhCCCCCEEEEeCCCCCCCHHH-H
Confidence 344556678899987764 3566788898888754321 23333334442214689888642 23443 3
Q ss_pred HHHHHhcCCCCcEEEEeC-HHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCC
Q 026235 118 LEAWKEAGTPNVRIGVVG-AGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG 175 (241)
Q Consensus 118 ~~~l~~~~~~~~~i~aIG-~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~ 175 (241)
+..+.+. .++++++.+. ....... .. .+-.++..+..+.+.|...+....
T Consensus 79 ~~~l~~~-~~~~~ii~ls~~~~~~~~-~~------~~~~~~l~KP~~~~~L~~~i~~~~ 129 (138)
T 2b4a_A 79 LDIVKEQ-TKQPSVLILTTGRHELIE-SS------EHNLSYLQKPFAISELRAAIDYHK 129 (138)
T ss_dssp HHHHTTS-SSCCEEEEEESCC--CCC-CS------SSCEEEEESSCCHHHHHHHHHHTC
T ss_pred HHHHHhh-CCCCCEEEEECCCCCHHH-HH------HHHHheeeCCCCHHHHHHHHHHHH
Confidence 4444432 3567887774 3332222 22 223356677789999998887654
No 184
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=63.34 E-value=12 Score=29.07 Aligned_cols=59 Identities=15% Similarity=0.102 Sum_probs=35.1
Q ss_pred EEEEEccCCC---c------hhHHHHHHhCC--CeeeEeeeeeeecCCC---------------Ch---------HHHHH
Q 026235 180 TVLYPASAKA---S------NEIEEGLSNRG--FEVVRLNTYTTEPVHH---------------VD---------QTVLK 224 (241)
Q Consensus 180 ~iL~~~g~~~---~------~~L~~~L~~~G--~~V~~~~vY~~~~~~~---------------~~---------~~~~~ 224 (241)
++|++.|... + +.+.+.|++.| ++|..+.+|+...+.. .+ .++.+
T Consensus 3 kilii~~S~~~~~s~t~~la~~~~~~l~~~g~~~~v~~~dl~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 82 (201)
T 1t5b_A 3 KVLVLKSSILAGYSQSGQLTDYFIEQWREKHVADEITVRDLAANPVPVLDGELVGAMRPGDAPLTPRQQDALALSDELIA 82 (201)
T ss_dssp EEEEEECCSSGGGCHHHHHHHHHHHHHHHHCTTCEEEEEETTTSCCCCCCHHHHHHTC--CCCCCHHHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCCeEEEEeccCCCCCCCCHHHHHhhcCCcccCCHHHHHHHHHHHHHHH
Confidence 5666665543 1 14556677665 7888888886532211 01 12233
Q ss_pred HcCCCCEEEEECCc
Q 026235 225 QALSIPVVAVASPS 238 (241)
Q Consensus 225 ~l~~id~IvFtSps 238 (241)
.+...|+|+|.||.
T Consensus 83 ~l~~aD~iv~~~P~ 96 (201)
T 1t5b_A 83 ELKAHDVIVIAAPM 96 (201)
T ss_dssp HHHHCSEEEEECCC
T ss_pred HHHhCCEEEEEeCc
Confidence 45689999999984
No 185
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=63.08 E-value=56 Score=27.43 Aligned_cols=121 Identities=13% Similarity=0.031 Sum_probs=66.4
Q ss_pred CCccEEEE-eCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHHHHHHhhhccCCC-CceeecCC-CCCHHHHHHHhhhCCCC
Q 026235 101 TIFDWIII-TSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCS-LDVAFSPS-KATGKILASELPKNGKK 177 (241)
Q Consensus 101 ~~~d~IiF-TS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~L~~~~~~~~~G-i~~~~~p~-~~t~e~L~~~l~~~~~~ 177 (241)
++.|.||- .+..........+.+. +++++..+.. ...+... + .-..+.|. ......+++.+.+.. .
T Consensus 80 ~~v~~iiG~~~s~~~~~~~~~~~~~---~iP~i~~~~~-~~~~~~~------~~~~f~~~~~~~~~~~~~~~~l~~~~-g 148 (366)
T 3td9_A 80 EKVLAIIGEVASAHSLAIAPIAEEN---KVPMVTPAST-NPLVTQG------RKFVSRVCFIDPFQGAAMAVFAYKNL-G 148 (366)
T ss_dssp SCCSEEEECSSHHHHHHHHHHHHHT---TCCEEESSCC-CGGGTTT------CSSEEESSCCHHHHHHHHHHHHHHTS-C
T ss_pred CCeEEEEccCCchhHHHHHHHHHhC---CCeEEecCCC-CccccCC------CCCEEEEeCCcHHHHHHHHHHHHHhc-C
Confidence 46999994 5566666667766654 4667666542 2222211 1 11112222 123455666665542 2
Q ss_pred ccEEEEEccCCC------chhHHHHHHhCCCeeeEeeeeeeecCCCChHHHHHHc--CCCCEEEEE
Q 026235 178 KCTVLYPASAKA------SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVA 235 (241)
Q Consensus 178 ~~~iL~~~g~~~------~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~l--~~id~IvFt 235 (241)
.+++.++.+... ...+.+.|++.|.++.... |... ..+.... ...+ .++|+|++.
T Consensus 149 ~~~iaii~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~-~~~~-~~d~~~~-~~~l~~~~~d~v~~~ 211 (366)
T 3td9_A 149 AKRVVVFTDVEQDYSVGLSNFFINKFTELGGQVKRVF-FRSG-DQDFSAQ-LSVAMSFNPDAIYIT 211 (366)
T ss_dssp CCEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEE-ECTT-CCCCHHH-HHHHHHTCCSEEEEC
T ss_pred CcEEEEEEeCCCcHHHHHHHHHHHHHHHCCCEEEEEE-eCCC-CccHHHH-HHHHHhcCCCEEEEc
Confidence 368888743211 1457788999999887666 6542 2222332 3333 689998873
No 186
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=62.95 E-value=23 Score=28.74 Aligned_cols=90 Identities=10% Similarity=0.117 Sum_probs=56.2
Q ss_pred CCeEEEeCCCCC-----hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEE--eCHHH-----HHHH
Q 026235 50 NPKVVVTRERGK-----NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIII--TSPEA-----GSVF 117 (241)
Q Consensus 50 g~~VLitR~~~~-----~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiF--TS~~a-----V~~f 117 (241)
+.+|++..+... ..-+...|+.+|++|+.+..- . ..+.+.+...+ .+.|.|.+ ++-.+ ++.+
T Consensus 92 ~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~--v---p~e~iv~~~~~-~~~d~v~l~~S~l~~~~~~~~~~~ 165 (215)
T 3ezx_A 92 AGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVD--V---LNENVVEEAAK-HKGEKVLLVGSALMTTSMLGQKDL 165 (215)
T ss_dssp CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSS--C---CHHHHHHHHHH-TTTSCEEEEEECSSHHHHTHHHHH
T ss_pred CCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCC--C---CHHHHHHHHHH-cCCCEEEEEchhcccCcHHHHHHH
Confidence 467777765433 345667889999999987542 1 13444444433 57788887 54332 4555
Q ss_pred HHHHHhcCC-CCcEEEEeCHHHHHHH-HHh
Q 026235 118 LEAWKEAGT-PNVRIGVVGAGTASIF-EEV 145 (241)
Q Consensus 118 ~~~l~~~~~-~~~~i~aIG~~Ta~~L-~~~ 145 (241)
.+.+.+.+. +++++++-|....+.+ ++.
T Consensus 166 i~~l~~~~~~~~v~v~vGG~~~~~~~a~~i 195 (215)
T 3ezx_A 166 MDRLNEEKLRDSVKCMFGGAPVSDKWIEEI 195 (215)
T ss_dssp HHHHHHTTCGGGSEEEEESSSCCHHHHHHH
T ss_pred HHHHHHcCCCCCCEEEEECCCCCHHHHHHh
Confidence 666766665 3789999887555444 455
No 187
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=62.61 E-value=3.4 Score=32.80 Aligned_cols=67 Identities=15% Similarity=0.173 Sum_probs=39.9
Q ss_pred HHHCCCcEEEeceEEEee------CCCchHHHHHHhcCCCccEEEEeCH-------HHHHHHHHHHHhcCCCCcEEEEeC
Q 026235 69 LAKHRIDCLELPLIQHAQ------GPDTDRLSSVLNADTIFDWIIITSP-------EAGSVFLEAWKEAGTPNVRIGVVG 135 (241)
Q Consensus 69 L~~~G~~v~~~P~~~~~~------~~~~~~l~~~l~~l~~~d~IiFTS~-------~aV~~f~~~l~~~~~~~~~i~aIG 135 (241)
+++.|+++..+.+.+... ....+.+......+..+|.|||.|| ..++.|++.+....+.+++++.+|
T Consensus 30 l~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~ii~~sP~y~~~~p~~lK~~ld~l~~~~~~gK~~~~~~ 109 (197)
T 2vzf_A 30 LARSDSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCNADGLIVATPIYKASYTGLLKAFLDILPQFALAGKAALPLA 109 (197)
T ss_dssp HHHSSEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHHCSEEEEEEECBTTBCCHHHHHHHTTSCTTTTTTCEEEEEE
T ss_pred HHHCCCeEEEEEccccCchhhcccccCcHHHHHHHHHHHHCCEEEEEeCccCCCCCHHHHHHHHhccccccCCCEEEEEE
Confidence 555688777665543210 0011233444445578999999986 467888876654345667776664
No 188
>2xdq_A Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=62.57 E-value=29 Score=31.28 Aligned_cols=141 Identities=12% Similarity=0.072 Sum_probs=82.0
Q ss_pred CeEEEeCCCCCh--HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCCCC
Q 026235 51 PKVVVTRERGKN--GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPN 128 (241)
Q Consensus 51 ~~VLitR~~~~~--~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~ 128 (241)
++|-+...-... .++.+.|++.|+++..++.- ...+ .+..++..+..+..++..- .....+++. -+
T Consensus 197 ~~vnilG~~~~~~~~ei~~lL~~~Gi~v~~~~~~-----~~~~----el~~~~~A~~ni~~~~~~~-~~A~~Le~~--~g 264 (460)
T 2xdq_A 197 PPLVLFGSLPDPVVTQLTLELKKQGIKVSGWLPA-----KRYT----ELPVIDEGYYVAGVNPFLS-RTATTLIRR--RK 264 (460)
T ss_dssp CCEEEESCCCHHHHHHHHHHHGGGTCCEEEEESC-----SSGG----GCCCCCTTCEEEESSTTCH-HHHHHHHHT--TC
T ss_pred CcEEEEEecCccHHHHHHHHHHHcCCeEEEEeCC-----CCHH----HHHccccCcEEEEcCHhHH-HHHHHHHHH--cC
Confidence 345555543333 36899999999999864211 2222 2335677777777776653 445555442 12
Q ss_pred cEEEE----eC-HHHHHHHHHhhhccCCCCceeecCCCCC--HHHHHHHhhhC--CCCccEEEEEccCCCchhHHHHHHh
Q 026235 129 VRIGV----VG-AGTASIFEEVIQSSKCSLDVAFSPSKAT--GKILASELPKN--GKKKCTVLYPASAKASNEIEEGLSN 199 (241)
Q Consensus 129 ~~i~a----IG-~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t--~e~L~~~l~~~--~~~~~~iL~~~g~~~~~~L~~~L~~ 199 (241)
++.+. +| ..|.+.|++. ..++|..+ +... -..+.+.+... ...|+++++..+....-.|...|.+
T Consensus 265 iP~~~~~~P~G~~~T~~~Lr~i--a~~~g~~~----e~i~~e~~~~~~~l~~~~~~l~GKrv~i~g~~~~~~~la~~L~e 338 (460)
T 2xdq_A 265 CQLITAPFPIGPDGTRTWIEQI--CATFGIQP----QGLAEREAETWQKLSDYLELVRGKSVFFMGDNLLEISLARFLIR 338 (460)
T ss_dssp CEEECCCCSBHHHHHHHHHHHH--HHHTTCCC----CSCHHHHHHHHHTTHHHHHHHTTCEEEECCCSSCHHHHHHHHHH
T ss_pred CCceecCcCccHHHHHHHHHHH--HHHHCcCH----HHHHHHHHHHHHHHHHHHHHhcCCEEEEECCchHHHHHHHHHHH
Confidence 33333 66 7788888876 23346542 2111 12233333321 1357899988555444568899999
Q ss_pred CCCeeeEeee
Q 026235 200 RGFEVVRLNT 209 (241)
Q Consensus 200 ~G~~V~~~~v 209 (241)
.|.++..+.+
T Consensus 339 lGm~vv~~gt 348 (460)
T 2xdq_A 339 CGMRVLEIGI 348 (460)
T ss_dssp TTCEEEEEEE
T ss_pred CCCEEEEeCC
Confidence 9999887553
No 189
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=62.45 E-value=45 Score=24.70 Aligned_cols=109 Identities=11% Similarity=0.124 Sum_probs=0.0
Q ss_pred CCCeEEEeCCCC-ChHHHHHHHHHCCCc-EEEeceEEEeeCCCchHHHHHHhcCCCccEEEE----eCHHHHHHHHHHHH
Q 026235 49 SNPKVVVTRERG-KNGKLIKALAKHRID-CLELPLIQHAQGPDTDRLSSVLNADTIFDWIII----TSPEAGSVFLEAWK 122 (241)
Q Consensus 49 ~g~~VLitR~~~-~~~~l~~~L~~~G~~-v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiF----TS~~aV~~f~~~l~ 122 (241)
++.||||.-... .+..+...|++.|++ +... .+..+..+.+ .-..||.|+. .--+|.+..-..-.
T Consensus 11 k~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a--------~~g~~al~~~-~~~~~DlillD~~MP~mdG~el~~~ir~ 81 (134)
T 3to5_A 11 KNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEA--------DDGLTALPML-KKGDFDFVVTDWNMPGMQGIDLLKNIRA 81 (134)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEE--------SSHHHHHHHH-HHHCCSEEEEESCCSSSCHHHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEE--------CCHHHHHHHH-HhCCCCEEEEcCCCCCCCHHHHHHHHHh
Q ss_pred hcCCCCcEEEEe----CHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhh
Q 026235 123 EAGTPNVRIGVV----GAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (241)
Q Consensus 123 ~~~~~~~~i~aI----G~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~ 173 (241)
....++++|+.+ .+.......+. |.. ++..+.++.+.|.+.+.+
T Consensus 82 ~~~~~~ipvI~lTa~~~~~~~~~~~~~------Ga~-~yl~KP~~~~~L~~~i~~ 129 (134)
T 3to5_A 82 DEELKHLPVLMITAEAKREQIIEAAQA------GVN-GYIVKPFTAATLKEKLDK 129 (134)
T ss_dssp STTTTTCCEEEEESSCCHHHHHHHHHT------TCC-EEEESSCCHHHHHHHHHH
T ss_pred CCCCCCCeEEEEECCCCHHHHHHHHHC------CCC-EEEECCCCHHHHHHHHHH
No 190
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=62.43 E-value=7.2 Score=32.67 Aligned_cols=54 Identities=15% Similarity=0.031 Sum_probs=37.5
Q ss_pred CCCeEEEeCC--CCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCH
Q 026235 49 SNPKVVVTRE--RGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP 111 (241)
Q Consensus 49 ~g~~VLitR~--~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~ 111 (241)
.+|+|++.+. .+.-..+.+.|++.|+++..+.++.-.+.+. ++.++|.||++-.
T Consensus 2 ~~~~vliiqh~~~e~~~~i~~~l~~~G~~v~v~~~~~~~~~p~---------~~~~~d~lIl~GG 57 (250)
T 3m3p_A 2 SLKPVMIIQFSASEGPGHFGDFLAGEHIPFQVLRMDRSDPLPA---------EIRDCSGLAMMGG 57 (250)
T ss_dssp CCCCEEEEESSSSCCCHHHHHHHHHTTCCEEEEEGGGTCCCCS---------CGGGSSEEEECCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHCCCeEEEEeccCCCcCcC---------ccccCCEEEECCC
Confidence 3678888864 3457788999999999988776654332221 2357899998754
No 191
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=62.11 E-value=22 Score=29.22 Aligned_cols=67 Identities=15% Similarity=0.134 Sum_probs=42.0
Q ss_pred EEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEccCCCchhHHHHHHhCCCee
Q 026235 130 RIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEV 204 (241)
Q Consensus 130 ~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~~~~~~iL~~~g~~~~~~L~~~L~~~G~~V 204 (241)
-|++-| .|++.|++.. ++.+.-+ ..+.-+++++|.+....+.++.++.....-+.+...-.-.|.++
T Consensus 66 VIISRG-gta~~Lr~~~-----~iPVV~I--~vs~~Dil~aL~~a~~~~~kIavVg~~~~~~~~~~i~~ll~~~i 132 (225)
T 2pju_A 66 AIIAAG-SNGAYLKSRL-----SVPVILI--KPSGYDVLQFLAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRL 132 (225)
T ss_dssp EEEEEH-HHHHHHHTTC-----SSCEEEE--CCCHHHHHHHHHHTTCTTSCEEEEEESSCCHHHHHHHHHHTCCE
T ss_pred EEEeCC-hHHHHHHhhC-----CCCEEEe--cCCHHHHHHHHHHHHhhCCcEEEEeCchhhhHHHHHHHHhCCce
Confidence 445555 6888888863 6665444 46888888888776555568877777665554443333335554
No 192
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=61.98 E-value=3.9 Score=33.73 Aligned_cols=73 Identities=11% Similarity=0.109 Sum_probs=43.7
Q ss_pred CCeEEEeCCCCC----h----HHHHHHHHHCCCcEEEeceEEEe--eCCC-----------------------------c
Q 026235 50 NPKVVVTRERGK----N----GKLIKALAKHRIDCLELPLIQHA--QGPD-----------------------------T 90 (241)
Q Consensus 50 g~~VLitR~~~~----~----~~l~~~L~~~G~~v~~~P~~~~~--~~~~-----------------------------~ 90 (241)
+|+||+.-.... + +.+.+.+++.|.+|..+-+++.. |.-+ .
T Consensus 1 ~mkiLiI~gspr~~S~t~~l~~~~~~~l~~~g~ev~~~dL~~~~~~P~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 80 (228)
T 3tem_A 1 GKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNFEPRATDKDITGTLSNPEVFNYGVETHEAYKQRSLA 80 (228)
T ss_dssp CCEEEEEECCSCTTSHHHHHHHHHHHHHHHHTCEEEEEETTTTTCCCCCCGGGBCSCCSCTTSCCHHHHHHHHHHHTCBC
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEhhhcCCcccCCHHHHhhhccccccccchhhhhhhhhcCCCc
Confidence 467776533322 2 33455666779999888776532 1111 1
Q ss_pred hHHHHHHhcCCCccEEEEeCH-------HHHHHHHHHHH
Q 026235 91 DRLSSVLNADTIFDWIIITSP-------EAGSVFLEAWK 122 (241)
Q Consensus 91 ~~l~~~l~~l~~~d~IiFTS~-------~aV~~f~~~l~ 122 (241)
+.+....+.+..+|.|||.+| ..++.|++.+-
T Consensus 81 dd~~~~~~~l~~aD~iv~~~P~y~~~~p~~lK~~iD~~~ 119 (228)
T 3tem_A 81 SDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRVL 119 (228)
T ss_dssp HHHHHHHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCEEEEECChhhcccCHHHHHHHHHHh
Confidence 334444445678899999886 46777777653
No 193
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=61.93 E-value=17 Score=29.39 Aligned_cols=71 Identities=18% Similarity=0.135 Sum_probs=45.2
Q ss_pred CCCCeEEEeCCCC-------ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHH
Q 026235 48 NSNPKVVVTRERG-------KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEA 120 (241)
Q Consensus 48 l~g~~VLitR~~~-------~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~ 120 (241)
+.|++|++.-... .-....+.|++.|+++..+.+.+ .+.++..+.+ .+.|.|+++-.+... +++.
T Consensus 25 ~~~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~----~~~~~~~~~l---~~ad~I~l~GG~~~~-l~~~ 96 (206)
T 3l4e_A 25 LQGKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIAT----ESLGEITTKL---RKNDFIYVTGGNTFF-LLQE 96 (206)
T ss_dssp CTTCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTT----SCHHHHHHHH---HHSSEEEECCSCHHH-HHHH
T ss_pred cCCCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC----CChHHHHHHH---HhCCEEEECCCCHHH-HHHH
Confidence 4467877664221 23567889999999877665433 2333343444 568999999987774 5666
Q ss_pred HHhcCC
Q 026235 121 WKEAGT 126 (241)
Q Consensus 121 l~~~~~ 126 (241)
+.+.++
T Consensus 97 L~~~gl 102 (206)
T 3l4e_A 97 LKRTGA 102 (206)
T ss_dssp HHHHTH
T ss_pred HHHCCh
Confidence 666553
No 194
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=61.87 E-value=42 Score=24.24 Aligned_cols=107 Identities=9% Similarity=0.090 Sum_probs=63.2
Q ss_pred CCeEEEeCCCC-ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEe----CHHHHHHHHHHHHhc
Q 026235 50 NPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAWKEA 124 (241)
Q Consensus 50 g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFT----S~~aV~~f~~~l~~~ 124 (241)
+++||+.-... ....+...|+..|+++... .+..+....+ .-..+|.|++- ..++.+. +..+.+.
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~l-~~~~~dliild~~l~~~~g~~~-~~~l~~~ 72 (155)
T 1qkk_A 3 APSVFLIDDDRDLRKAMQQTLELAGFTVSSF--------ASATEALAGL-SADFAGIVISDIRMPGMDGLAL-FRKILAL 72 (155)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------SCHHHHHHTC-CTTCCSEEEEESCCSSSCHHHH-HHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCcEEEEE--------CCHHHHHHHH-HhCCCCEEEEeCCCCCCCHHHH-HHHHHhh
Confidence 57888887764 3567888899889765432 2333333334 22568988874 2344443 3444443
Q ss_pred CCCCcEEEEeCH-HHHH---HHHHhhhccCCCCceeecCCCCCHHHHHHHhhhC
Q 026235 125 GTPNVRIGVVGA-GTAS---IFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (241)
Q Consensus 125 ~~~~~~i~aIG~-~Ta~---~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~ 174 (241)
.+++++++++. .... .+.+. |.. ++..+..+.+.|...+...
T Consensus 73 -~~~~pii~ls~~~~~~~~~~~~~~------g~~-~~l~kP~~~~~L~~~i~~~ 118 (155)
T 1qkk_A 73 -DPDLPMILVTGHGDIPMAVQAIQD------GAY-DFIAKPFAADRLVQSARRA 118 (155)
T ss_dssp -CTTSCEEEEECGGGHHHHHHHHHT------TCC-EEEESSCCHHHHHHHHHHH
T ss_pred -CCCCCEEEEECCCChHHHHHHHhc------CCC-eEEeCCCCHHHHHHHHHHH
Confidence 24566666543 3322 23344 765 4677778999999888654
No 195
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=61.81 E-value=40 Score=28.49 Aligned_cols=111 Identities=14% Similarity=0.072 Sum_probs=66.8
Q ss_pred CCeEEEeCCCCChHH-----HHHH--------HHHC-CCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHH--
Q 026235 50 NPKVVVTRERGKNGK-----LIKA--------LAKH-RIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA-- 113 (241)
Q Consensus 50 g~~VLitR~~~~~~~-----l~~~--------L~~~-G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~a-- 113 (241)
..+|++..+...... +... |+.+ |++|+.+-.- .| .+++.+...+ .+.|.|..++-.+
T Consensus 120 ~~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~~--vp---~e~iv~aa~e-~~~d~VglS~l~t~~ 193 (262)
T 1xrs_B 120 KIVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGSQ--VA---NEDFIKKAVE-LEADVLLVSQTVTQK 193 (262)
T ss_dssp CEEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCSS--BC---HHHHHHHHHH-TTCSEEEEECCCCTT
T ss_pred CCEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCCC--CC---HHHHHHHHHH-cCCCEEEEEeecCCc
Confidence 456777765543222 2323 7788 9999877551 12 2344444423 5789988876332
Q ss_pred ------HHHHHHHHHhcCCC-CcEEEEeCHHH-HHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhh
Q 026235 114 ------GSVFLEAWKEAGTP-NVRIGVVGAGT-ASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (241)
Q Consensus 114 ------V~~f~~~l~~~~~~-~~~i~aIG~~T-a~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~ 173 (241)
++.+.+.+++.+.+ ++++++=|... .+.+++. |... +.++......+++.+..
T Consensus 194 ~~~~~~~~~~i~~L~~~g~~~~i~vivGG~~~~~~~a~~i------Gad~-~~~da~~~~~~a~~l~~ 254 (262)
T 1xrs_B 194 NVHIQNMTHLIELLEAEGLRDRFVLLCGGPRINNEIAKEL------GYDA-GFGPGRFADDVATFAVK 254 (262)
T ss_dssp SHHHHHHHHHHHHHHHTTCGGGSEEEEECTTCCHHHHHTT------TCSE-EECTTCCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHc------CCeE-EECCchHHHHHHHHHHH
Confidence 34456666666653 58888888654 4445566 9876 44555677777776654
No 196
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=61.52 E-value=14 Score=29.27 Aligned_cols=57 Identities=14% Similarity=0.160 Sum_probs=33.7
Q ss_pred EEEEEccCCCc--------hhHHHHHHhCCCeeeEeeeeeeecCCC------C---hHHHHHHcCCCCEEEEECCc
Q 026235 180 TVLYPASAKAS--------NEIEEGLSNRGFEVVRLNTYTTEPVHH------V---DQTVLKQALSIPVVAVASPS 238 (241)
Q Consensus 180 ~iL~~~g~~~~--------~~L~~~L~~~G~~V~~~~vY~~~~~~~------~---~~~~~~~l~~id~IvFtSps 238 (241)
+||++.|.... +.+.+.|+ .|++|..+.+|+. |.-. . ..++.+.+...|+|||.||.
T Consensus 4 kilii~gS~r~~s~t~~la~~~~~~~~-~~~~v~~~dl~~l-p~~~~~~~~~~~~~~~~~~~~i~~AD~iV~~sP~ 77 (192)
T 3fvw_A 4 RILFIVGSFSEGSFNRQLAKKAETIIG-DRAQVSYLSYDRV-PFFNQDLETSVHPEVAHAREEVQEADAIWIFSPV 77 (192)
T ss_dssp EEEEEESCCSTTCHHHHHHHHHHHHHT-TSSEEEECCCSSC-CCCCGGGTTSCCHHHHHHHHHHHHCSEEEEECCC
T ss_pred EEEEEEcCCCCCCHHHHHHHHHHHhcC-CCCEEEEEeCccC-CCCCcccccCCcHHHHHHHHHHHhCCEEEEECcc
Confidence 67777665421 12444454 5778888877752 2211 0 12345556789999999984
No 197
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=61.26 E-value=24 Score=28.76 Aligned_cols=75 Identities=12% Similarity=0.003 Sum_probs=50.7
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCC--chHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGT 138 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~--~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~T 138 (241)
.-+.+.|+++|..+.....+......+ ...+.+.+..-.++|+|+.++-. ...+.+.+.+.++.++.++..+...
T Consensus 159 ~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~-a~g~~~al~~~g~~di~vig~d~~~ 235 (304)
T 3gbv_A 159 IGFRQYMQEHHPACNILELNLHADLNIEDSRMLDDFFREHPDVKHGITFNSK-VYIIGEYLQQRRKSDFSLIGYDLLE 235 (304)
T ss_dssp HHHHHHHHHHCTTSEEEEEEEESSCSSCHHHHHHHHHHHCTTCCEEEESSSC-THHHHHHHHHTTCCSCEEEEESCCH
T ss_pred HHHHHHHHhhCCCcEEEEeeecCCCHHHHHHHHHHHHHhCCCeEEEEEcCcc-hHHHHHHHHHcCCCCcEEEEeCCCH
Confidence 346677888887765544443322222 24466666555689999998887 6667888888887778888887654
No 198
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*
Probab=60.91 E-value=36 Score=27.60 Aligned_cols=86 Identities=9% Similarity=-0.033 Sum_probs=51.0
Q ss_pred CCCCCCeEEEeCCCC---ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCC--ccEEE--EeCHHHHHHHH
Q 026235 46 ASNSNPKVVVTRERG---KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTI--FDWII--ITSPEAGSVFL 118 (241)
Q Consensus 46 ~~l~g~~VLitR~~~---~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~--~d~Ii--FTS~~aV~~f~ 118 (241)
.++.||++|||.... -...+++.|.++|++|... .+.. ...+.+.+.....+. ..++. +|+..+++.++
T Consensus 3 ~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~--~r~~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~ 78 (266)
T 3oig_A 3 FSLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFT--YAGE--RLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCF 78 (266)
T ss_dssp SCCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEE--ESSG--GGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHH
T ss_pred cccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEe--cCch--HHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHH
Confidence 357899999998763 3678999999999987643 1111 112333333333322 33322 47888999888
Q ss_pred HHHHhc-CCCCcEEEEeC
Q 026235 119 EAWKEA-GTPNVRIGVVG 135 (241)
Q Consensus 119 ~~l~~~-~~~~~~i~aIG 135 (241)
+.+.+. +.-+.-|.+.|
T Consensus 79 ~~~~~~~g~id~li~~Ag 96 (266)
T 3oig_A 79 ASIKEQVGVIHGIAHCIA 96 (266)
T ss_dssp HHHHHHHSCCCEEEECCC
T ss_pred HHHHHHhCCeeEEEEccc
Confidence 876543 22244444444
No 199
>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2
Probab=60.67 E-value=31 Score=27.94 Aligned_cols=87 Identities=8% Similarity=-0.048 Sum_probs=53.4
Q ss_pred CCCCCCCeEEEeCCC--C-ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEE--EeCHHHHHHHHH
Q 026235 45 SASNSNPKVVVTRER--G-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII--ITSPEAGSVFLE 119 (241)
Q Consensus 45 ~~~l~g~~VLitR~~--~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~Ii--FTS~~aV~~f~~ 119 (241)
...+.+|+||||... . -...+++.|.++|++|...- +.. ...+.+.+.....+...++. +|+..+++.+++
T Consensus 9 ~~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~--r~~--~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 84 (271)
T 3ek2_A 9 MGFLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTY--VGD--RFKDRITEFAAEFGSELVFPCDVADDAQIDALFA 84 (271)
T ss_dssp CCTTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEE--SSG--GGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHH
T ss_pred ccccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEe--cch--hhHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHH
Confidence 346779999999975 3 46789999999999876431 111 11233333333344444444 488999999988
Q ss_pred HHHhc-CCCCcEEEEeC
Q 026235 120 AWKEA-GTPNVRIGVVG 135 (241)
Q Consensus 120 ~l~~~-~~~~~~i~aIG 135 (241)
.+.+. +.-+.-|.+.|
T Consensus 85 ~~~~~~g~id~lv~nAg 101 (271)
T 3ek2_A 85 SLKTHWDSLDGLVHSIG 101 (271)
T ss_dssp HHHHHCSCEEEEEECCC
T ss_pred HHHHHcCCCCEEEECCc
Confidence 77553 22234444444
No 200
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=60.67 E-value=30 Score=24.41 Aligned_cols=109 Identities=14% Similarity=0.045 Sum_probs=62.8
Q ss_pred CCCeEEEeCCCC-ChHHHHHHHHHCC-CcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeC----HHHHHHHHHHHH
Q 026235 49 SNPKVVVTRERG-KNGKLIKALAKHR-IDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVFLEAWK 122 (241)
Q Consensus 49 ~g~~VLitR~~~-~~~~l~~~L~~~G-~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS----~~aV~~f~~~l~ 122 (241)
..++||+.-... ....+...|++.| +++.... +..+..+.+ .-..+|.|+.-. .++.+. ...+.
T Consensus 13 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~--------~~~~a~~~l-~~~~~dlvi~D~~l~~~~g~~~-~~~l~ 82 (135)
T 3snk_A 13 KRKQVALFSSDPNFKRDVATRLDALAIYDVRVSE--------TDDFLKGPP-ADTRPGIVILDLGGGDLLGKPG-IVEAR 82 (135)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHHTSSEEEEEEC--------GGGGGGCCC-TTCCCSEEEEEEETTGGGGSTT-HHHHH
T ss_pred CCcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEec--------cHHHHHHHH-hccCCCEEEEeCCCCCchHHHH-HHHHH
Confidence 356899887764 3567888899988 6655332 211111222 225788888742 234333 33344
Q ss_pred hcCCCCcEEEEe-CHHH---HHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCC
Q 026235 123 EAGTPNVRIGVV-GAGT---ASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG 175 (241)
Q Consensus 123 ~~~~~~~~i~aI-G~~T---a~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~ 175 (241)
+.. ++++++.+ |... ...+.+. |.. ++..+..+.+.|...+....
T Consensus 83 ~~~-~~~~ii~~s~~~~~~~~~~~~~~------g~~-~~l~KP~~~~~L~~~i~~~~ 131 (135)
T 3snk_A 83 ALW-ATVPLIAVSDELTSEQTRVLVRM------NAS-DWLHKPLDGKELLNAVTFHD 131 (135)
T ss_dssp GGG-TTCCEEEEESCCCHHHHHHHHHT------TCS-EEEESSCCHHHHHHHHHHTC
T ss_pred hhC-CCCcEEEEeCCCCHHHHHHHHHc------CcH-hhccCCCCHHHHHHHHHHHh
Confidence 332 35566554 3322 3333445 765 47777889999998887654
No 201
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=60.63 E-value=15 Score=29.94 Aligned_cols=52 Identities=13% Similarity=0.091 Sum_probs=36.4
Q ss_pred CeEEEeCCC--CChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCH
Q 026235 51 PKVVVTRER--GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP 111 (241)
Q Consensus 51 ~~VLitR~~--~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~ 111 (241)
+||++.+.. +.-..+.+.|++.|+++..+.++.....++ ++.++|+||++-.
T Consensus 1 m~i~vi~h~~~e~~g~~~~~l~~~g~~~~~~~~~~~~~~p~---------~~~~~d~lii~GG 54 (236)
T 3l7n_A 1 MRIHFILHETFEAPGAYLAWAALRGHDVSMTKVYRYEKLPK---------DIDDFDMLILMGG 54 (236)
T ss_dssp CEEEEEECCTTSCCHHHHHHHHHTTCEEEEEEGGGTCCCCS---------CGGGCSEEEECCC
T ss_pred CeEEEEeCCCCCCchHHHHHHHHCCCeEEEEeeeCCCCCCC---------CccccCEEEECCC
Confidence 466666543 345688999999999998887776543322 2357899999853
No 202
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=60.51 E-value=15 Score=26.84 Aligned_cols=33 Identities=6% Similarity=-0.080 Sum_probs=28.6
Q ss_pred CCCCCCCeEEEeCCCC--ChHHHHHHHHHCCCcEE
Q 026235 45 SASNSNPKVVVTRERG--KNGKLIKALAKHRIDCL 77 (241)
Q Consensus 45 ~~~l~g~~VLitR~~~--~~~~l~~~L~~~G~~v~ 77 (241)
..++.|++|++|..-. .++++.+.++++|+.|.
T Consensus 30 ~~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Gg~v~ 64 (109)
T 2k6g_A 30 ENCLEGLIFVITGVLESIERDEAKSLIERYGGKVT 64 (109)
T ss_dssp TTTTTTCEEEEESBCSSCCHHHHHHHHHHTTCEEE
T ss_pred CCCCCCCEEEEeeeCCCCCHHHHHHHHHHcCCEee
Confidence 4579999999998864 58999999999999876
No 203
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=60.46 E-value=16 Score=31.55 Aligned_cols=163 Identities=15% Similarity=0.098 Sum_probs=89.2
Q ss_pred CeEEEeCCCCChHHH----HHHHHHCCCcEEEeceEEEeeCCCchHHHHHH---hcCCCccEEEEeCH--HHH--HHHHH
Q 026235 51 PKVVVTRERGKNGKL----IKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NADTIFDWIIITSP--EAG--SVFLE 119 (241)
Q Consensus 51 ~~VLitR~~~~~~~l----~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l---~~l~~~d~IiFTS~--~aV--~~f~~ 119 (241)
.-|++....+.+..+ .+.+++.|++...+.+-+.. ..+++.+.+ +.....|.|+..-| ..+ +...+
T Consensus 40 Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~---s~~ell~~I~~lN~d~~v~GIlVqlPLP~~id~~~v~~ 116 (300)
T 4a26_A 40 LASIIVGQRMDSKKYVQLKHKAAAEVGMASFNVELPEDI---SQEVLEVNVEKLNNDPNCHGIIVQLPLPKHLNENRAIE 116 (300)
T ss_dssp EEEEEESCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTC---CHHHHHHHHHHHHTCTTCCEEEECSCCCTTSCHHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEECCCCC---CHHHHHHHHHHhcCCCCCCEEEEcCCCCCCCCHHHHHh
Confidence 345666555444333 44677889888765442211 234454444 34478999999887 211 22222
Q ss_pred HHH-hcCCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhC--CCCccEEEEEcc-CCCchhHHH
Q 026235 120 AWK-EAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN--GKKKCTVLYPAS-AKASNEIEE 195 (241)
Q Consensus 120 ~l~-~~~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~--~~~~~~iL~~~g-~~~~~~L~~ 195 (241)
.+. +...++. ++.-...|-.- +....+.| -|+.+.++.|..+ ...|++++++-. +....-+..
T Consensus 117 ~I~p~KDVDG~-----~~~N~G~l~~g------~~~~~~~P--cTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~ 183 (300)
T 4a26_A 117 KIHPHKDADAL-----LPVNVGLLHYK------GREPPFTP--CTAKGVIVLLKRCGIEMAGKRAVVLGRSNIVGAPVAA 183 (300)
T ss_dssp TSCGGGCTTCC-----SHHHHHHHHCT------TCCCSCCC--HHHHHHHHHHHHHTCCCTTCEEEEECCCTTTHHHHHH
T ss_pred hCCcccccccC-----CcceEEEeecC------CCcCCCCC--CCHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHH
Confidence 221 1112333 33333333211 11122343 4788888888765 246889888853 334566888
Q ss_pred HHHhCCCeeeEeeeeeeecCCCChHHHH--HHcCCCCEEEEECC
Q 026235 196 GLSNRGFEVVRLNTYTTEPVHHVDQTVL--KQALSIPVVAVASP 237 (241)
Q Consensus 196 ~L~~~G~~V~~~~vY~~~~~~~~~~~~~--~~l~~id~IvFtSp 237 (241)
.|.+.|++|.-+.-+.. .+. +.+.+.|+|+-+.+
T Consensus 184 lL~~~gAtVtv~~~~T~--------~l~l~~~~~~ADIVI~Avg 219 (300)
T 4a26_A 184 LLMKENATVTIVHSGTS--------TEDMIDYLRTADIVIAAMG 219 (300)
T ss_dssp HHHHTTCEEEEECTTSC--------HHHHHHHHHTCSEEEECSC
T ss_pred HHHHCCCeEEEEeCCCC--------CchhhhhhccCCEEEECCC
Confidence 89999998765543211 222 34467888876654
No 204
>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A
Probab=60.24 E-value=32 Score=27.83 Aligned_cols=36 Identities=14% Similarity=0.012 Sum_probs=27.9
Q ss_pred cCCCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEe
Q 026235 44 ASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (241)
Q Consensus 44 ~~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (241)
...++.||+||||..... ...+++.|.+.|++|..+
T Consensus 8 ~~~~l~~k~vlITGasggiG~~la~~l~~~G~~V~~~ 44 (266)
T 1xq1_A 8 QRWSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTC 44 (266)
T ss_dssp CTTCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEE
Confidence 345678999999988754 677888999999887643
No 205
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=60.23 E-value=37 Score=28.47 Aligned_cols=124 Identities=11% Similarity=0.004 Sum_probs=69.3
Q ss_pred CCCccEEEEe-CHHHHHHHHHHHHhcCCCCcEEEEeCHHHHHHHHHhhhccCCCCce-eecCC-CCCHHHHHHHhhhCCC
Q 026235 100 DTIFDWIIIT-SPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDV-AFSPS-KATGKILASELPKNGK 176 (241)
Q Consensus 100 l~~~d~IiFT-S~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~-~~~p~-~~t~e~L~~~l~~~~~ 176 (241)
-...|.||-. +..........+.+. +++++..+.. ...+... +-.. .+.+. ......+++.+.+.
T Consensus 70 ~~~v~~iig~~~s~~~~~~~~~~~~~---~iP~v~~~~~-~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~-- 137 (358)
T 3hut_A 70 DPRVVGVLGDFSSTVSMAAGSIYGKE---GMPQLSPTAA-HPDYIKI------SPWQFRAITTPAFEGPNNAAWMIGD-- 137 (358)
T ss_dssp CTTEEEEEECSSHHHHHHHHHHHHHH---TCCEEESSCC-CGGGTTS------CTTEEESSCCGGGHHHHHHHHHHHT--
T ss_pred cCCcEEEEcCCCcHHHHHHHHHHHHC---CCcEEecCCC-CcccccC------CCeEEEecCChHHHHHHHHHHHHHc--
Confidence 3688999875 444555556666554 4667766532 2223222 2011 12233 23456677777666
Q ss_pred CccEEEEEccCC-----CchhHHHHHHhCCCeeeEeeeeeeecCCCChHHHHHHc--CCCCEEEEECC
Q 026235 177 KKCTVLYPASAK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP 237 (241)
Q Consensus 177 ~~~~iL~~~g~~-----~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~l--~~id~IvFtSp 237 (241)
..++|.++..+. ....+.+.|++.|+++.....|.... .+... ....+ .++|+|++.+.
T Consensus 138 g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~-~~~~~-~~~~l~~~~~d~i~~~~~ 203 (358)
T 3hut_A 138 GFTSVAVIGVTTDWGLSSAQAFRKAFELRGGAVVVNEEVPPGN-RRFDD-VIDEIEDEAPQAIYLAMA 203 (358)
T ss_dssp TCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTC-CCCHH-HHHHHHHHCCSEEEEESC
T ss_pred CCCEEEEEecCcHHHHHHHHHHHHHHHHcCCEEEEEEecCCCC-ccHHH-HHHHHHhcCCCEEEEccC
Confidence 346888885432 12457788999999887665664322 22222 23333 47898887754
No 206
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=60.09 E-value=45 Score=24.01 Aligned_cols=111 Identities=9% Similarity=0.084 Sum_probs=63.1
Q ss_pred CCCCeEEEeCCCC-ChHHHHHHHHH-CCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEe----CHHHHHHHHHHH
Q 026235 48 NSNPKVVVTRERG-KNGKLIKALAK-HRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAW 121 (241)
Q Consensus 48 l~g~~VLitR~~~-~~~~l~~~L~~-~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFT----S~~aV~~f~~~l 121 (241)
+.+.+||+.-... ....+...|++ .|+++.. ...+..+....+. ...+|.|+.- ..++.+. +..+
T Consensus 3 ~~~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~-------~~~~~~~a~~~l~-~~~~dlii~D~~l~~~~g~~~-~~~l 73 (153)
T 3cz5_A 3 LSTARIMLVDDHPIVREGYRRLIERRPGYAVVA-------EAADAGEAYRLYR-ETTPDIVVMDLTLPGPGGIEA-TRHI 73 (153)
T ss_dssp -CCEEEEEECSCHHHHHHHHHHHTTSTTEEEEE-------EESSHHHHHHHHH-TTCCSEEEECSCCSSSCHHHH-HHHH
T ss_pred CcccEEEEECCcHHHHHHHHHHHhhCCCcEEEE-------EeCCHHHHHHHHh-cCCCCEEEEecCCCCCCHHHH-HHHH
Confidence 4467898887764 35567777776 5655431 1133344444553 3568988863 2345443 3344
Q ss_pred HhcCCCCcEEEEeC-HH---HHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCC
Q 026235 122 KEAGTPNVRIGVVG-AG---TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG 175 (241)
Q Consensus 122 ~~~~~~~~~i~aIG-~~---Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~ 175 (241)
.+.. ++++++++. .. ....+.+. |.. ++..+..+.+.|.+.|....
T Consensus 74 ~~~~-~~~~ii~ls~~~~~~~~~~~~~~------g~~-~~l~kp~~~~~L~~~i~~~~ 123 (153)
T 3cz5_A 74 RQWD-GAARILIFTMHQGSAFALKAFEA------GAS-GYVTKSSDPAELVQAIEAIL 123 (153)
T ss_dssp HHHC-TTCCEEEEESCCSHHHHHHHHHT------TCS-EEEETTSCTTHHHHHHHHHT
T ss_pred HHhC-CCCeEEEEECCCCHHHHHHHHHC------CCc-EEEecCCCHHHHHHHHHHHH
Confidence 4432 455565553 22 23333445 776 46677788888998887654
No 207
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=59.52 E-value=5.6 Score=31.68 Aligned_cols=40 Identities=10% Similarity=-0.017 Sum_probs=26.3
Q ss_pred hCCCeeeEeeeeeeecCC----------------CChHHHHHHcCCCCEEEEECCc
Q 026235 199 NRGFEVVRLNTYTTEPVH----------------HVDQTVLKQALSIPVVAVASPS 238 (241)
Q Consensus 199 ~~G~~V~~~~vY~~~~~~----------------~~~~~~~~~l~~id~IvFtSps 238 (241)
+.|.+|..+.+|+....+ +...++.+.+...|+|||.+|.
T Consensus 28 ~~g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~iV~~~P~ 83 (196)
T 3lcm_A 28 SKEHTVSTLDLYAEHFDPVLQFNETHKRRDLAKVAEMEKYRDLVTWADHLIFIFPI 83 (196)
T ss_dssp CTTSEEEEEETTTTTCCCCCCCCSSSCGGGGGGCGGGHHHHHHHHHCSEEEEEEEC
T ss_pred cCCCeEEEEEcccCCCCccCChHHHHhhcCCCCcHHHHHHHHHHHhCCEEEEECch
Confidence 467888888888764211 1123445556789999999984
No 208
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0
Probab=59.52 E-value=34 Score=27.30 Aligned_cols=86 Identities=10% Similarity=0.041 Sum_probs=49.9
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCC--CccEEEE----eCHHHHHHHH
Q 026235 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT--IFDWIII----TSPEAGSVFL 118 (241)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~--~~d~IiF----TS~~aV~~f~ 118 (241)
..+.||++|||....+ ...+++.|.++|++|..+- +. ....+.+.+.+...+ ....+.+ ++...++.++
T Consensus 10 ~~l~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~--r~--~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~ 85 (247)
T 3i1j_A 10 ELLKGRVILVTGAARGIGAAAARAYAAHGASVVLLG--RT--EASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELA 85 (247)
T ss_dssp TTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE--SC--HHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHH
T ss_pred ccCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEe--cC--HHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHH
Confidence 4578999999988754 6788999999999875431 11 011122333333322 2222222 7888888888
Q ss_pred HHHHhc-CCCCcEEEEeC
Q 026235 119 EAWKEA-GTPNVRIGVVG 135 (241)
Q Consensus 119 ~~l~~~-~~~~~~i~aIG 135 (241)
+.+.+. +.-+.-|.+.|
T Consensus 86 ~~~~~~~g~id~lv~nAg 103 (247)
T 3i1j_A 86 ARVEHEFGRLDGLLHNAS 103 (247)
T ss_dssp HHHHHHHSCCSEEEECCC
T ss_pred HHHHHhCCCCCEEEECCc
Confidence 776543 22234444444
No 209
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=59.51 E-value=71 Score=27.99 Aligned_cols=79 Identities=9% Similarity=0.036 Sum_probs=47.4
Q ss_pred CCCCeEEEeCCCCChHHHHHHHHHCCCcEEEec-----------eE-EEeeC---CCchHHHHHHh---cCCCccEEEEe
Q 026235 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELP-----------LI-QHAQG---PDTDRLSSVLN---ADTIFDWIIIT 109 (241)
Q Consensus 48 l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P-----------~~-~~~~~---~~~~~l~~~l~---~l~~~d~IiFT 109 (241)
.++|+++|.........+.+.++++|+++..+- .. +..+. .+.+.+.+.+. .-..+|+|+.+
T Consensus 3 ~~~k~l~Il~~~~~~~~i~~aa~~lG~~vv~v~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~~~id~V~~~ 82 (425)
T 3vot_A 3 KRNKNLAIICQNKHLPFIFEEAERLGLKVTFFYNSAEDFPGNLPAVERCVPLPLFEDEEAAMDVVRQTFVEFPFDGVMTL 82 (425)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTCEEEEEEETTSCCCCSCTTEEEEEEECTTTCHHHHHHHHHHHHHHSCCSEEECC
T ss_pred CCCcEEEEECCChhHHHHHHHHHHCCCEEEEEECCCcccccCHhhccEEEecCCCCCHHHHHHHHHHhhhhcCCCEEEEC
Confidence 457899999877677788899999999987651 01 11111 12222223232 22578999887
Q ss_pred CHHHHHHHHHHHHhcCC
Q 026235 110 SPEAGSVFLEAWKEAGT 126 (241)
Q Consensus 110 S~~aV~~f~~~l~~~~~ 126 (241)
+-..+.......+..++
T Consensus 83 ~e~~~~~~a~l~e~lgl 99 (425)
T 3vot_A 83 FEPALPFTAKAAEALNL 99 (425)
T ss_dssp CGGGHHHHHHHHHHTTC
T ss_pred CchhHHHHHHHHHHcCC
Confidence 76666554444444443
No 210
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=58.99 E-value=17 Score=26.71 Aligned_cols=33 Identities=12% Similarity=0.044 Sum_probs=28.4
Q ss_pred CCCCCCCeEEEeCCCC-ChHHHHHHHHHCCCcEE
Q 026235 45 SASNSNPKVVVTRERG-KNGKLIKALAKHRIDCL 77 (241)
Q Consensus 45 ~~~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~ 77 (241)
..++.|++|++|..-. .++++.+.++++|+.+.
T Consensus 8 ~~~l~G~~~ViTG~l~~~R~e~k~~ie~~Ggkv~ 41 (113)
T 2cok_A 8 DKPLSNMKILTLGKLSRNKDEVKAMIEKLGGKLT 41 (113)
T ss_dssp CCSSSSCEEEECSCCSSCHHHHHHHHHHTTCEEE
T ss_pred CCCcCCCEEEEEecCCCCHHHHHHHHHHCCCEEc
Confidence 5689999999998754 57899999999999886
No 211
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=58.92 E-value=25 Score=30.41 Aligned_cols=75 Identities=11% Similarity=0.102 Sum_probs=43.9
Q ss_pred CCCeEEEeCCCCChHHHHHHHHHCCCcEEEeceEE------------EeeCCCchHHHHHHhcCCCccEEEEeCHHHHHH
Q 026235 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQ------------HAQGPDTDRLSSVLNADTIFDWIIITSPEAGSV 116 (241)
Q Consensus 49 ~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~------------~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~ 116 (241)
..++|||+........+...++++|+++..+-... ..+..+.+.+.+.++. ..+|+|+..+-.....
T Consensus 10 ~~~~ili~g~g~~~~~~~~a~~~~G~~v~~~~~~~~~~~~~~~d~~~~~~~~d~~~l~~~~~~-~~~d~v~~~~e~~~~~ 88 (391)
T 1kjq_A 10 AATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADAPAMHVAHRSHVINMLDGDALRRVVEL-EKPHYIVPEIEAIATD 88 (391)
T ss_dssp TCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTCGGGGGSSEEEECCTTCHHHHHHHHHH-HCCSEEEECSSCSCHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCCchhhhccceEECCCCCHHHHHHHHHH-cCCCEEEECCCcCCHH
Confidence 45899999665446788899999999887654311 1111233444444422 4789988866433223
Q ss_pred HHHHHHhc
Q 026235 117 FLEAWKEA 124 (241)
Q Consensus 117 f~~~l~~~ 124 (241)
+...+...
T Consensus 89 ~~~~l~~~ 96 (391)
T 1kjq_A 89 MLIQLEEE 96 (391)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhC
Confidence 34445443
No 212
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=58.87 E-value=83 Score=27.22 Aligned_cols=35 Identities=6% Similarity=-0.115 Sum_probs=29.4
Q ss_pred CCCCCCeEEEeCCCCChHHHHHHHHHCCCcEEEec
Q 026235 46 ASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELP 80 (241)
Q Consensus 46 ~~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P 80 (241)
.-+.|++|+|.....-...+.+.+++.|+++..+.
T Consensus 10 ~~~~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d 44 (389)
T 3q2o_A 10 IILPGKTIGIIGGGQLGRMMALAAKEMGYKIAVLD 44 (389)
T ss_dssp CCCTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEe
Confidence 34678999999887678889999999999988764
No 213
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=58.79 E-value=18 Score=30.31 Aligned_cols=159 Identities=12% Similarity=0.032 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHH--HHHHHHHHhcCCCCcEEEEeCHHHHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG--SVFLEAWKEAGTPNVRIGVVGAGTAS 140 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV--~~f~~~l~~~~~~~~~i~aIG~~Ta~ 140 (241)
..+.+.++++|+++.....-+..+......++..+. ..+|.||+.+...- ...++.+.+ .++++++++.....
T Consensus 23 ~g~~~~~~~~g~~~~~~~~~~~d~~~q~~~i~~li~--~~vdgiii~~~~~~~~~~~~~~a~~---~gipvV~~d~~~~~ 97 (316)
T 1tjy_A 23 NGAQEAGKALGIDVTYDGPTEPSVSGQVQLVNNFVN--QGYDAIIVSAVSPDGLCPALKRAMQ---RGVKILTWDSDTKP 97 (316)
T ss_dssp HHHHHHHHHHTCEEEECCCSSCCHHHHHHHHHHHHH--TTCSEEEECCSSSSTTHHHHHHHHH---TTCEEEEESSCCCG
T ss_pred HHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHH--cCCCEEEEeCCCHHHHHHHHHHHHH---CcCEEEEecCCCCC
Q ss_pred HHHHhhhccCCCCceee-cCC-CCCHHHHHHHhhhCCC-CccEEEEEccCCCchh-------HHHHHHhCCCeeeEeeee
Q 026235 141 IFEEVIQSSKCSLDVAF-SPS-KATGKILASELPKNGK-KKCTVLYPASAKASNE-------IEEGLSNRGFEVVRLNTY 210 (241)
Q Consensus 141 ~L~~~~~~~~~Gi~~~~-~p~-~~t~e~L~~~l~~~~~-~~~~iL~~~g~~~~~~-------L~~~L~~~G~~V~~~~vY 210 (241)
. +....+ ..+ ......+.+.|.+... ..+++.++.|...... +.+.|++.+..+..+..+
T Consensus 98 ----~------~~~~~v~~~D~~~~g~~~~~~L~~~~~~g~~~i~~i~g~~~~~~~~~r~~g~~~~l~~~~~~~~~~~~~ 167 (316)
T 1tjy_A 98 ----E------CRSYYINQGTPKQLGSMLVEMAAHQVDKEKAKVAFFYSSPTVTDQNQWVKEAKAKISQEHPGWEIVTTQ 167 (316)
T ss_dssp ----G------GCSEEEESCCHHHHHHHHHHHHHHHHCSSSEEEEEEESCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred ----C------CceEEEecCCHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCChhHHHHHHHHHHHHHhhCCCcEEEEec
Q ss_pred eeecCCCChHHHHHHc----CCCCEEEEEC
Q 026235 211 TTEPVHHVDQTVLKQA----LSIPVVAVAS 236 (241)
Q Consensus 211 ~~~~~~~~~~~~~~~l----~~id~IvFtS 236 (241)
..........+..+.+ .++|+|+-.+
T Consensus 168 ~~~~~~~~~~~~~~~ll~~~~~~~aI~~~n 197 (316)
T 1tjy_A 168 FGYNDATKSLQTAEGIIKAYPDLDAIIAPD 197 (316)
T ss_dssp ECTTCHHHHHHHHHHHHHHCSSCCEEEECS
T ss_pred cCCCCHHHHHHHHHHHHHhCCCCCEEEECC
No 214
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=58.76 E-value=45 Score=23.57 Aligned_cols=108 Identities=12% Similarity=0.112 Sum_probs=64.3
Q ss_pred CCeEEEeCCCC-ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhc-CCCccEEEEeC----HHHHHHHHHHHHh
Q 026235 50 NPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA-DTIFDWIIITS----PEAGSVFLEAWKE 123 (241)
Q Consensus 50 g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~-l~~~d~IiFTS----~~aV~~f~~~l~~ 123 (241)
..+||+.-... ....+...|++.|+++... .+..+....+.. -..+|.|++-- .++.+. ...+.+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~g~~v~~~--------~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~-~~~l~~ 73 (143)
T 3jte_A 3 LAKILVIDDESTILQNIKFLLEIDGNEVLTA--------SSSTEGLRIFTENCNSIDVVITDMKMPKLSGMDI-LREIKK 73 (143)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------SSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHH-HHHHHH
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCceEEEe--------CCHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHH-HHHHHH
Confidence 46788887764 4567888899999765432 233333444432 35789888753 244443 333444
Q ss_pred cCCCCcEEEEeCH-HH---HHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhC
Q 026235 124 AGTPNVRIGVVGA-GT---ASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (241)
Q Consensus 124 ~~~~~~~i~aIG~-~T---a~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~ 174 (241)
.. ++++++.+.. .. ...+.+. |.. ++..+..+.+.|...|...
T Consensus 74 ~~-~~~~ii~ls~~~~~~~~~~~~~~------g~~-~~l~kp~~~~~l~~~l~~~ 120 (143)
T 3jte_A 74 IT-PHMAVIILTGHGDLDNAILAMKE------GAF-EYLRKPVTAQDLSIAINNA 120 (143)
T ss_dssp HC-TTCEEEEEECTTCHHHHHHHHHT------TCS-EEEESSCCHHHHHHHHHHH
T ss_pred hC-CCCeEEEEECCCCHHHHHHHHHh------Ccc-eeEeCCCCHHHHHHHHHHH
Confidence 32 4566665543 22 2333445 765 4667778999998888643
No 215
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}
Probab=58.73 E-value=56 Score=26.42 Aligned_cols=88 Identities=17% Similarity=0.095 Sum_probs=51.6
Q ss_pred cCCCCCCCeEEEeCCC--CChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEE----EeCHHHHHHH
Q 026235 44 ASASNSNPKVVVTRER--GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII----ITSPEAGSVF 117 (241)
Q Consensus 44 ~~~~l~g~~VLitR~~--~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~Ii----FTS~~aV~~f 117 (241)
....+.||+||||... .-...+++.|.++|++|..+- +. . ...+.+.+.+......+..+ +++..+++.+
T Consensus 16 ~~~~l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~--r~-~-~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~ 91 (266)
T 3o38_A 16 GHGLLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISD--YH-E-RRLGETRDQLADLGLGRVEAVVCDVTSTEAVDAL 91 (266)
T ss_dssp CCSTTTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEE--SC-H-HHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHH
T ss_pred cccCCCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEec--CC-H-HHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHH
Confidence 3455889999999984 357889999999999876431 10 0 01122333332222222332 3788999988
Q ss_pred HHHHHhc-CCCCcEEEEeC
Q 026235 118 LEAWKEA-GTPNVRIGVVG 135 (241)
Q Consensus 118 ~~~l~~~-~~~~~~i~aIG 135 (241)
++.+.+. +.-+.-|.+.|
T Consensus 92 ~~~~~~~~g~id~li~~Ag 110 (266)
T 3o38_A 92 ITQTVEKAGRLDVLVNNAG 110 (266)
T ss_dssp HHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHhCCCcEEEECCC
Confidence 8876543 22244455544
No 216
>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}
Probab=58.67 E-value=7.8 Score=32.48 Aligned_cols=79 Identities=8% Similarity=-0.055 Sum_probs=51.1
Q ss_pred CCCCCHHHHHHHhhhCCCCccEEEEEccCCCchhHHHHHHhCCCeeeEeeeeeeecCC------C----ChHHHHHHcCC
Q 026235 159 PSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVH------H----VDQTVLKQALS 228 (241)
Q Consensus 159 p~~~t~e~L~~~l~~~~~~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~------~----~~~~~~~~l~~ 228 (241)
....+..|++..|.+....+ +++++-+......+...|.+.|+ .++.+|.+.+.. . ...++.+.+.+
T Consensus 90 G~NTD~~G~~~~l~~~~~~~-~vliiGaGg~a~ai~~~L~~~G~--~~I~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~ 166 (253)
T 3u62_A 90 GYNTDWVGVVKSLEGVEVKE-PVVVVGAGGAARAVIYALLQMGV--KDIWVVNRTIERAKALDFPVKIFSLDQLDEVVKK 166 (253)
T ss_dssp EECCHHHHHHHHTTTCCCCS-SEEEECCSHHHHHHHHHHHHTTC--CCEEEEESCHHHHHTCCSSCEEEEGGGHHHHHHT
T ss_pred EEcchHHHHHHHHHhcCCCC-eEEEECcHHHHHHHHHHHHHcCC--CEEEEEeCCHHHHHHHHHHcccCCHHHHHhhhcC
Confidence 44667889999997665567 89988655555667888888886 456666554321 0 01122223467
Q ss_pred CCEEEEECCccC
Q 026235 229 IPVVAVASPSAV 240 (241)
Q Consensus 229 id~IvFtSps~v 240 (241)
.|+|+-+.|.++
T Consensus 167 aDiVInatp~gm 178 (253)
T 3u62_A 167 AKSLFNTTSVGM 178 (253)
T ss_dssp CSEEEECSSTTT
T ss_pred CCEEEECCCCCC
Confidence 899999887653
No 217
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
Probab=58.35 E-value=22 Score=28.63 Aligned_cols=50 Identities=16% Similarity=0.186 Sum_probs=34.6
Q ss_pred CCCCeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHH
Q 026235 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE 112 (241)
Q Consensus 48 l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~ 112 (241)
..+++|+|..-...-.+..+.|++.|+++..++. .+ .+..+|.||++-..
T Consensus 21 ~~~~~I~il~~~~~~~~~~~~l~~~G~~~~~~~~--------~~-------~l~~~Dglil~GG~ 70 (219)
T 1q7r_A 21 QSNMKIGVLGLQGAVREHVRAIEACGAEAVIVKK--------SE-------QLEGLDGLVLPGGE 70 (219)
T ss_dssp CCCCEEEEESCGGGCHHHHHHHHHTTCEEEEECS--------GG-------GGTTCSEEEECCCC
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHCCCEEEEECC--------HH-------HHhhCCEEEECCCC
Confidence 3467898886543334566889999998877653 11 23579999999764
No 218
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=58.29 E-value=46 Score=23.48 Aligned_cols=108 Identities=9% Similarity=0.048 Sum_probs=62.9
Q ss_pred CCeEEEeCCCC-ChHHHHHHHHHCCC--cEEEeceEEEeeCCCchHHHHHHhc-----CCCccEEEEeC----HHHHHHH
Q 026235 50 NPKVVVTRERG-KNGKLIKALAKHRI--DCLELPLIQHAQGPDTDRLSSVLNA-----DTIFDWIIITS----PEAGSVF 117 (241)
Q Consensus 50 g~~VLitR~~~-~~~~l~~~L~~~G~--~v~~~P~~~~~~~~~~~~l~~~l~~-----l~~~d~IiFTS----~~aV~~f 117 (241)
..+||+.-... ....+...|++.|. .+... .+..+....+.. -..+|.|++-- .++.+ +
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~--------~~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~g~~-~ 77 (143)
T 2qvg_A 7 KVDILYLEDDEVDIQSVERVFHKISSLIKIEIA--------KSGNQALDMLYGRNKENKIHPKLILLDINIPKMNGIE-F 77 (143)
T ss_dssp CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEE--------SSHHHHHHHHHTCTTCCCCCCSEEEEETTCTTSCHHH-H
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEE--------CCHHHHHHHHHhcccccCCCCCEEEEecCCCCCCHHH-H
Confidence 46788887764 35678888888887 44422 333444445533 15689888752 23443 3
Q ss_pred HHHHHhcC-CCCcEEEEeCHH-HH---HHHHHhhhccCCCCceeecCCCCCHHHHHHHhhh
Q 026235 118 LEAWKEAG-TPNVRIGVVGAG-TA---SIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (241)
Q Consensus 118 ~~~l~~~~-~~~~~i~aIG~~-Ta---~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~ 173 (241)
...+.+.. .++++++++... .. ..+.+. |.. ++..+..+.+.|.+.+..
T Consensus 78 ~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~------g~~-~~l~kP~~~~~L~~~~~~ 131 (143)
T 2qvg_A 78 LKELRDDSSFTDIEVFVLTAAYTSKDKLAFESL------NIR-GHLIKPLDYGEAIKLFWI 131 (143)
T ss_dssp HHHHTTSGGGTTCEEEEEESCCCHHHHHHHTTT------TCC-EEEESSCCHHHHHHHHHH
T ss_pred HHHHHcCccccCCcEEEEeCCCCHHHHHHHHhc------CCC-eEEECCCCHHHHHHHHHH
Confidence 33343321 146777665432 22 233344 765 467778899999888753
No 219
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=58.25 E-value=19 Score=27.94 Aligned_cols=29 Identities=14% Similarity=0.257 Sum_probs=22.1
Q ss_pred HHHhcCCCccEEEEeCH-------HHHHHHHHHHHh
Q 026235 95 SVLNADTIFDWIIITSP-------EAGSVFLEAWKE 123 (241)
Q Consensus 95 ~~l~~l~~~d~IiFTS~-------~aV~~f~~~l~~ 123 (241)
...+.+..+|.|||.|| ..++.|++.+..
T Consensus 79 ~~~~~l~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~ 114 (201)
T 1t5b_A 79 ELIAELKAHDVIVIAAPMYNFNIPTQLKNYFDLIAR 114 (201)
T ss_dssp HHHHHHHHCSEEEEECCCBTTBCCHHHHHHHHHHCC
T ss_pred HHHHHHHhCCEEEEEeCcccCcCCHHHHHHHHHhee
Confidence 34445678999999995 678999988753
No 220
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=58.06 E-value=20 Score=29.22 Aligned_cols=73 Identities=12% Similarity=0.139 Sum_probs=46.4
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCC--chHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCC---CCcEEEEeC
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVG 135 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~--~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~---~~~~i~aIG 135 (241)
.-+.+.|+++|..+....++......+ .+.+.+.+.....+|+|+.++-.....+.+.+.+.++ .++.+++.+
T Consensus 147 ~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vig~d 224 (289)
T 3g85_A 147 KGFIETCHKNGIKISENHIIAAENSIHGGVDAAKKLMKLKNTPKALFCNSDSIALGVISVLNKRQISIPDDIEIVAIG 224 (289)
T ss_dssp HHHHHHHHHTTCBCCGGGEEECCSSHHHHHHHHHHHTTSSSCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEEE
T ss_pred HHHHHHHHHcCCCCChhheeccCCCHHHHHHHHHHHHcCCCCCcEEEEcCCHHHHHHHHHHHHcCCCCCCceEEEEeC
Confidence 345667888887654333332211111 1234555544457899999888888888888888876 478888887
No 221
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=57.89 E-value=12 Score=31.86 Aligned_cols=37 Identities=22% Similarity=0.107 Sum_probs=26.9
Q ss_pred cEEEEEccCCC--------chhHHHHHHhCCCeeeEeeeeeeecC
Q 026235 179 CTVLYPASAKA--------SNEIEEGLSNRGFEVVRLNTYTTEPV 215 (241)
Q Consensus 179 ~~iL~~~g~~~--------~~~L~~~L~~~G~~V~~~~vY~~~~~ 215 (241)
=|||++-|.-. .+...+.|++.|.+|+.+.+|.....
T Consensus 23 MKiLII~aHP~~~S~n~aL~~~~~~~l~~~G~eV~v~DLy~~~f~ 67 (280)
T 4gi5_A 23 MKVLLIYAHPEPRSLNGALKNFAIRHLQQAGHEVQVSDLYAMRWK 67 (280)
T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEETTTTTCC
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHHHCCCeEEEEEccccCCC
Confidence 36777766422 13567889999999999999986543
No 222
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}
Probab=57.81 E-value=39 Score=28.46 Aligned_cols=70 Identities=11% Similarity=-0.068 Sum_probs=47.3
Q ss_pred CCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCC-ccEEE--EeCHHHHHHHHHHHH
Q 026235 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTI-FDWII--ITSPEAGSVFLEAWK 122 (241)
Q Consensus 47 ~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~-~d~Ii--FTS~~aV~~f~~~l~ 122 (241)
.|+||.+|||....+ ...+++.|.+.|++|...- .+.+.+++..++++. .-.+. .|+...++.+++...
T Consensus 26 rL~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~-------r~~~~l~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~ 98 (273)
T 4fgs_A 26 RLNAKIAVITGATSGIGLAAAKRFVAEGARVFITG-------RRKDVLDAAIAEIGGGAVGIQADSANLAELDRLYEKVK 98 (273)
T ss_dssp TTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEE-------SCHHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHH
T ss_pred hhCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEE-------CCHHHHHHHHHHcCCCeEEEEecCCCHHHHHHHHHHHH
Confidence 589999999988654 6789999999999987431 123445555544432 22221 478899998888765
Q ss_pred h
Q 026235 123 E 123 (241)
Q Consensus 123 ~ 123 (241)
+
T Consensus 99 ~ 99 (273)
T 4fgs_A 99 A 99 (273)
T ss_dssp H
T ss_pred H
Confidence 4
No 223
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=57.66 E-value=6 Score=33.85 Aligned_cols=78 Identities=10% Similarity=0.008 Sum_probs=47.7
Q ss_pred CCCCCCeEEEeCCCCC--------hHHHHHHHHHCCCcEEEeceEEEeeCC-----------------------------
Q 026235 46 ASNSNPKVVVTRERGK--------NGKLIKALAKHRIDCLELPLIQHAQGP----------------------------- 88 (241)
Q Consensus 46 ~~l~g~~VLitR~~~~--------~~~l~~~L~~~G~~v~~~P~~~~~~~~----------------------------- 88 (241)
.-+..|+|||.-..+. .+.+.+.|++.|.+|..+-+|+....+
T Consensus 18 ~~m~~MKiLII~aHP~~~S~n~aL~~~~~~~l~~~G~eV~v~DLy~~~f~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (280)
T 4gi5_A 18 LYFQSMKVLLIYAHPEPRSLNGALKNFAIRHLQQAGHEVQVSDLYAMRWKAGYDADDSGAPPVGEFWRPTLDSKQAFAQG 97 (280)
T ss_dssp ----CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEETTTTTCCCSCCGGGSSSSCSSSSCCHHHHHHHHHHHT
T ss_pred chhhCCeEEEEEeCCCCccHHHHHHHHHHHHHHHCCCeEEEEEccccCCCCcCCHHHhcccccccccChhhHHHHHhhcC
Confidence 3455678887744332 345667788899999988877643211
Q ss_pred -CchHHHHHHhcCCCccEEEEeC-------HHHHHHHHHHHHh
Q 026235 89 -DTDRLSSVLNADTIFDWIIITS-------PEAGSVFLEAWKE 123 (241)
Q Consensus 89 -~~~~l~~~l~~l~~~d~IiFTS-------~~aV~~f~~~l~~ 123 (241)
...++.+..+.+...|.|||.+ |...+.|++.+-.
T Consensus 98 ~~~~dv~~~~~~l~~aD~iv~~~P~~w~~~Pa~lK~~iDrv~~ 140 (280)
T 4gi5_A 98 TQSADIVAEQEKLLWADTVIFQFPLWWFSMPAIMKGWIDRVYA 140 (280)
T ss_dssp CSCHHHHHHHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHSC
T ss_pred CCcHHHHHHHHHHHhCCEEEEEeccccccCcHHHHHHHHHhcc
Confidence 0122333333456789999987 5788888887643
No 224
>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*
Probab=57.31 E-value=1.1e+02 Score=27.68 Aligned_cols=72 Identities=11% Similarity=0.034 Sum_probs=43.6
Q ss_pred CHHHHHHHhhh---CCCCccEEEEEccCCCchhHHHHHHhCCCeeeEeeeeeeecCCC--------ChHHHHHHcCCCCE
Q 026235 163 TGKILASELPK---NGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHH--------VDQTVLKQALSIPV 231 (241)
Q Consensus 163 t~e~L~~~l~~---~~~~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~--------~~~~~~~~l~~id~ 231 (241)
+.+.+++.+.+ ....|+++.++........+...|+..|++|. +|+..+... ....+.+.+...|+
T Consensus 193 t~~slldgi~ratg~~L~GktVgIiG~G~IG~~vA~~Lka~Ga~Vi---v~D~~p~~a~~A~~~G~~~~sL~eal~~ADV 269 (436)
T 3h9u_A 193 CRESLVDGIKRATDVMIAGKTACVCGYGDVGKGCAAALRGFGARVV---VTEVDPINALQAAMEGYQVLLVEDVVEEAHI 269 (436)
T ss_dssp HHHHHHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEE---EECSCHHHHHHHHHTTCEECCHHHHTTTCSE
T ss_pred chHHHHHHHHHhcCCcccCCEEEEEeeCHHHHHHHHHHHHCCCEEE---EECCChhhhHHHHHhCCeecCHHHHHhhCCE
Confidence 45666666643 22457888888665556678899999998654 444432110 00012333478999
Q ss_pred EEEECC
Q 026235 232 VAVASP 237 (241)
Q Consensus 232 IvFtSp 237 (241)
|+.++.
T Consensus 270 Vilt~g 275 (436)
T 3h9u_A 270 FVTTTG 275 (436)
T ss_dssp EEECSS
T ss_pred EEECCC
Confidence 987664
No 225
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen fixation, nitrogen metabolism, molybdoenzymes, electron transfer; HET: HCA CFM CLF; 1.60A {Klebsiella pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Probab=56.99 E-value=4.4 Score=37.79 Aligned_cols=140 Identities=11% Similarity=0.007 Sum_probs=80.3
Q ss_pred hHHHHHHHHHCCCcEEEeceE------------EEeeC-CCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhc-CCC
Q 026235 62 NGKLIKALAKHRIDCLELPLI------------QHAQG-PDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA-GTP 127 (241)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~------------~~~~~-~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~-~~~ 127 (241)
..++.+.|++.|+++..+|-+ ..-+. ...++ +..++....-+..++..-....+.+++. +.+
T Consensus 233 ~~eik~lL~~~Gi~v~~lpd~s~~ld~~~~~~~~~~~gg~~~~e----i~~~~~A~~niv~~~~~~~~~A~~Le~r~GiP 308 (519)
T 1qgu_B 233 FRVLKRMMEQMAVPCSLLSDPSEVLDTPADGHYRMYSGGTTQQE----MKEAPDAIDTLLLQPWQLLKSKKVVQEMWNQP 308 (519)
T ss_dssp HHHHHHHHHHHTCCEEESSCTTTTTSCCCSSCCCSCCCCBCHHH----HHHGGGEEEEEESSTTTCHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHcCCeEEEecCccccccCcccCcccccCCCCCHHH----HHhhhcCCEEEEECHHHHHHHHHHHHHHcCCC
Confidence 368999999999999977743 12121 12233 3345677777777776545566666653 555
Q ss_pred CcEE-EEeC-HHHHHHHHHhhhccCCCCceeecCCCC--CHHHHHHHhhhC--CCCccEEEEEccCCCchhHHHHHHhCC
Q 026235 128 NVRI-GVVG-AGTASIFEEVIQSSKCSLDVAFSPSKA--TGKILASELPKN--GKKKCTVLYPASAKASNEIEEGLSNRG 201 (241)
Q Consensus 128 ~~~i-~aIG-~~Ta~~L~~~~~~~~~Gi~~~~~p~~~--t~e~L~~~l~~~--~~~~~~iL~~~g~~~~~~L~~~L~~~G 201 (241)
-+.. +-+| ..|.+.|++.. .++|..+ |+.. .-..+++.+... ...|+++++.....---.|...|.+.|
T Consensus 309 ~i~~~~PiG~~~T~~~L~~la--~~~g~~~---~~~i~~er~~~~~~l~d~~~~l~Gkrv~i~gd~~~~~~la~~L~ElG 383 (519)
T 1qgu_B 309 ATEVAIPLGLAATDELLMTVS--QLSGKPI---ADALTLERGRLVDMMLDSHTWLHGKKFGLYGDPDFVMGLTRFLLELG 383 (519)
T ss_dssp CCCCCCCBSHHHHHHHHHHHH--HHHCCCC---CHHHHHHHHHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHHHTT
T ss_pred eEecCCCcchHHHHHHHHHHH--HHHCCCc---HHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHHHCC
Confidence 4444 3388 67888887751 2235431 1100 011233444321 125789988843222234677899999
Q ss_pred CeeeEeeee
Q 026235 202 FEVVRLNTY 210 (241)
Q Consensus 202 ~~V~~~~vY 210 (241)
.++..+.+-
T Consensus 384 m~vv~v~~~ 392 (519)
T 1qgu_B 384 CEPTVILSH 392 (519)
T ss_dssp CEEEEEEET
T ss_pred CEEEEEEeC
Confidence 988766554
No 226
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=56.88 E-value=25 Score=29.85 Aligned_cols=154 Identities=8% Similarity=0.018 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEe-CHHHHHHHHHHHHhcCCCCcEEEEeCHHHHHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT-SPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFT-S~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~ 141 (241)
..+.+.++++|+++.....-..........+...+ -..+|.||+. ....-......+.. .+++++++|...
T Consensus 81 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~l~--~~~vdGiIi~~~~~~~~~~~~~~~~---~~iPvV~i~~~~--- 152 (349)
T 1jye_A 81 AAILSRADQLGASVVVSMVERSGVEACKTAVHNLL--AQRVSGLIINYPLDDQDAIAVEAAC---TNVPALFLDVSD--- 152 (349)
T ss_dssp HHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHHH--TTTCSCEEEESCCCHHHHHHHHHHT---TTSCEEESSSCT---
T ss_pred HHHHHHHHHcCCEEEEEeCCCCcHHHHHHHHHHHH--HCCCCEEEEecCCCChhHHHHHHhh---CCCCEEEEcccC---
Q ss_pred HHHhhhccCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEccCCCchh-------HHHHHHhCCCeeeEeeeeeeec
Q 026235 142 FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNE-------IEEGLSNRGFEVVRLNTYTTEP 214 (241)
Q Consensus 142 L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~~~~~~iL~~~g~~~~~~-------L~~~L~~~G~~V~~~~vY~~~~ 214 (241)
.. ++.....-........++.|.+... ++|.++.|...... +.+.|++.|+++.. ++....
T Consensus 153 --~~------~~~~V~~d~~~~~~~a~~~L~~~G~--~~I~~i~g~~~~~~~~~R~~Gf~~al~~~gi~~~~--~~~~~~ 220 (349)
T 1jye_A 153 --QT------PINSIIFSHEDGTRLGVEHLVALGH--QQIALLAGPLSSVSARLRLAGWHKYLTRNQIQPIA--EREGDW 220 (349)
T ss_dssp --TS------SSCEEEECHHHHHHHHHHHHHHHTC--CSEEEEECCTTSHHHHHHHHHHHHHHHHTTCCCSE--EEECCS
T ss_pred --CC------CCCEEEEchHHHHHHHHHHHHHCCC--CEEEEEeCCCCCccHHHHHHHHHHHHHHcCCCccc--cccCCC
Q ss_pred CCCChHHHHHHc----CCCCEEEEEC
Q 026235 215 VHHVDQTVLKQA----LSIPVVAVAS 236 (241)
Q Consensus 215 ~~~~~~~~~~~l----~~id~IvFtS 236 (241)
......+....+ ..+|+|+..+
T Consensus 221 ~~~~~~~~~~~ll~~~~~~~ai~~~n 246 (349)
T 1jye_A 221 SAMSGFQQTMQMLNEGIVPTAMLVAN 246 (349)
T ss_dssp SHHHHHHHHHHHHHTTCCCSEEEESS
T ss_pred ChHHHHHHHHHHHhCCCCCCEEEECC
No 227
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=56.73 E-value=41 Score=26.36 Aligned_cols=100 Identities=13% Similarity=0.144 Sum_probs=60.0
Q ss_pred eCHHHHHHHHHHHHhcCCC-CcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEccC
Q 026235 109 TSPEAGSVFLEAWKEAGTP-NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASA 187 (241)
Q Consensus 109 TS~~aV~~f~~~l~~~~~~-~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~~~~~~iL~~~g~ 187 (241)
-|+..++...+.+...+.+ ++.+ ..|.... .+... -.+...+.....+.+ +++.+.+...++.++++....
T Consensus 85 ~s~~~~~~a~~~~~~~g~~~~v~~-~~~d~~~-~~~~~-----~~~D~v~~~~~~~~~-~l~~~~~~LkpgG~lv~~~~~ 156 (204)
T 3njr_A 85 PRADRIENIQKNIDTYGLSPRMRA-VQGTAPA-ALADL-----PLPEAVFIGGGGSQA-LYDRLWEWLAPGTRIVANAVT 156 (204)
T ss_dssp SCHHHHHHHHHHHHHTTCTTTEEE-EESCTTG-GGTTS-----CCCSEEEECSCCCHH-HHHHHHHHSCTTCEEEEEECS
T ss_pred CCHHHHHHHHHHHHHcCCCCCEEE-EeCchhh-hcccC-----CCCCEEEECCcccHH-HHHHHHHhcCCCcEEEEEecC
Confidence 3556666555555555555 4443 3444322 12221 034554544444566 777777765567777776543
Q ss_pred -CCchhHHHHHHhCCCeeeEeeeeeeecCC
Q 026235 188 -KASNEIEEGLSNRGFEVVRLNTYTTEPVH 216 (241)
Q Consensus 188 -~~~~~L~~~L~~~G~~V~~~~vY~~~~~~ 216 (241)
.....+.+.|++.|+++..+.+++..+..
T Consensus 157 ~~~~~~~~~~l~~~g~~i~~i~~~~~~~~~ 186 (204)
T 3njr_A 157 LESETLLTQLHARHGGQLLRIDIAQAEPLG 186 (204)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEEEEEEEEET
T ss_pred cccHHHHHHHHHhCCCcEEEEEeecccccC
Confidence 33456888999999999999998877654
No 228
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}
Probab=56.62 E-value=31 Score=29.25 Aligned_cols=35 Identities=11% Similarity=0.047 Sum_probs=28.4
Q ss_pred CCCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEe
Q 026235 45 SASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (241)
Q Consensus 45 ~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (241)
...+.||++|||....+ ...+++.|.+.|++|..+
T Consensus 41 m~~l~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~ 76 (317)
T 3oec_A 41 MNRLQGKVAFITGAARGQGRTHAVRLAQDGADIVAI 76 (317)
T ss_dssp -CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred hhccCCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEE
Confidence 34688999999988754 678999999999998765
No 229
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}
Probab=56.62 E-value=40 Score=27.18 Aligned_cols=34 Identities=15% Similarity=-0.024 Sum_probs=27.4
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEe
Q 026235 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (241)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (241)
.++.||++|||..... ...+++.|.+.|++|..+
T Consensus 3 m~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~ 37 (250)
T 2fwm_X 3 MDFSGKNVWVTGAGKGIGYATALAFVEAGAKVTGF 37 (250)
T ss_dssp CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE
Confidence 3577899999988654 678899999999988753
No 230
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=56.60 E-value=77 Score=25.56 Aligned_cols=110 Identities=15% Similarity=0.137 Sum_probs=65.3
Q ss_pred CCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEe----CHHHHHHHHHHH
Q 026235 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAW 121 (241)
Q Consensus 47 ~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFT----S~~aV~~f~~~l 121 (241)
...+.+||+.-.... ...+...|++.|+++... .+..+..+.+.. ..+|.|+.- ..++.+.. ..+
T Consensus 126 ~~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~a--------~~~~eal~~l~~-~~~dlvl~D~~mp~~~G~~l~-~~i 195 (254)
T 2ayx_A 126 DNDDMMILVVDDHPINRRLLADQLGSLGYQCKTA--------NDGVDALNVLSK-NHIDIVLSDVNMPNMDGYRLT-QRI 195 (254)
T ss_dssp CCCCCEEEEEESSHHHHHHHHHHHHHHTSEEEEE--------CCSHHHHHHHHH-SCCSEEEEEESSCSSCCHHHH-HHH
T ss_pred CCCCCEEEEEeCCHHHHHHHHHHHHHcCCEEEEE--------CCHHHHHHHHHh-CCCCEEEEcCCCCCCCHHHHH-HHH
Confidence 456788999877653 466788888889865422 233333344433 568888753 22344333 223
Q ss_pred HhcCCCCcEEEEeCH----HHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhC
Q 026235 122 KEAGTPNVRIGVVGA----GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (241)
Q Consensus 122 ~~~~~~~~~i~aIG~----~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~ 174 (241)
.+.. ++++++++.. .....+.+. |.. ++..+..+.+.|.+.|...
T Consensus 196 r~~~-~~~piI~lt~~~~~~~~~~~~~~------G~~-~~l~KP~~~~~L~~~l~~~ 244 (254)
T 2ayx_A 196 RQLG-LTLPVIGVTANALAEEKQRCLES------GMD-SCLSKPVTLDVIKQTLTLY 244 (254)
T ss_dssp HHHH-CCSCEEEEESSTTSHHHHHHHHC------CCE-EEEESSCCHHHHHHHHHHH
T ss_pred HhcC-CCCcEEEEECCCCHHHHHHHHHc------CCc-eEEECCCCHHHHHHHHHHH
Confidence 3321 3566666532 233444556 875 5777888999998888643
No 231
>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}
Probab=56.49 E-value=61 Score=27.08 Aligned_cols=76 Identities=11% Similarity=0.027 Sum_probs=47.3
Q ss_pred cCCCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEE----EeCHHHHHHHH
Q 026235 44 ASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII----ITSPEAGSVFL 118 (241)
Q Consensus 44 ~~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~Ii----FTS~~aV~~f~ 118 (241)
....+.||+||||..... ...+++.|.+.|++|...- +. ....+.+.+.+...+..+..+ +++..+++.++
T Consensus 35 ~m~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~--r~--~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~ 110 (293)
T 3rih_A 35 VMFDLSARSVLVTGGTKGIGRGIATVFARAGANVAVAA--RS--PRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAA 110 (293)
T ss_dssp CTTCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEE--SS--GGGGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHH
T ss_pred cccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEE--CC--HHHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHH
Confidence 345678999999988754 6779999999999876431 11 111233334443322122322 37888998888
Q ss_pred HHHHh
Q 026235 119 EAWKE 123 (241)
Q Consensus 119 ~~l~~ 123 (241)
+.+.+
T Consensus 111 ~~~~~ 115 (293)
T 3rih_A 111 RTVVD 115 (293)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76644
No 232
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}
Probab=56.39 E-value=13 Score=30.53 Aligned_cols=100 Identities=14% Similarity=0.074 Sum_probs=48.5
Q ss_pred ccceeccccccccCCCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCC-CccEEE--
Q 026235 32 FSRIQASSDATSASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT-IFDWII-- 107 (241)
Q Consensus 32 ~~~~~~~~~~~~~~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~-~~d~Ii-- 107 (241)
+..++....--.....+.|++||||....+ +..+++.|.+.|++|..+- +. ....+.+.+.+...+ ...++.
T Consensus 11 ~~~~~~~~~~~~~m~~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~--r~--~~~~~~~~~~~~~~~~~~~~~~~D 86 (262)
T 3rkr_A 11 HHSSGHIDDDDKHMSSLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTA--RD--VEKLRAVEREIVAAGGEAESHACD 86 (262)
T ss_dssp --------------CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE--SC--HHHHHHHHHHHHHTTCEEEEEECC
T ss_pred ccccCCCCCCcchhhccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEE--CC--HHHHHHHHHHHHHhCCceeEEEec
Confidence 344444433334456688999999988754 6788999999999876431 10 001122222232221 112211
Q ss_pred EeCHHHHHHHHHHHHhc-CCCCcEEEEeC
Q 026235 108 ITSPEAGSVFLEAWKEA-GTPNVRIGVVG 135 (241)
Q Consensus 108 FTS~~aV~~f~~~l~~~-~~~~~~i~aIG 135 (241)
+++..+++.+++.+.+. +.-+.-|.+.|
T Consensus 87 ~~~~~~v~~~~~~~~~~~g~id~lv~~Ag 115 (262)
T 3rkr_A 87 LSHSDAIAAFATGVLAAHGRCDVLVNNAG 115 (262)
T ss_dssp TTCHHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 36788888887765432 32344454444
No 233
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=56.27 E-value=49 Score=23.20 Aligned_cols=109 Identities=10% Similarity=0.048 Sum_probs=64.9
Q ss_pred CCCeEEEeCCCC-ChHHHHHHHHH-CCCc-EEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeC----HHHHHHHHHHH
Q 026235 49 SNPKVVVTRERG-KNGKLIKALAK-HRID-CLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVFLEAW 121 (241)
Q Consensus 49 ~g~~VLitR~~~-~~~~l~~~L~~-~G~~-v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS----~~aV~~f~~~l 121 (241)
.+++||+.-... ....+...|++ .|++ +... .+..+....+.. ..+|.|++-- .++.+ +...+
T Consensus 7 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~--------~~~~~a~~~l~~-~~~dlii~d~~l~~~~g~~-~~~~l 76 (143)
T 3cnb_A 7 NDFSILIIEDDKEFADMLTQFLENLFPYAKIKIA--------YNPFDAGDLLHT-VKPDVVMLDLMMVGMDGFS-ICHRI 76 (143)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEE--------CSHHHHHHHHHH-TCCSEEEEETTCTTSCHHH-HHHHH
T ss_pred CCceEEEEECCHHHHHHHHHHHHhccCccEEEEE--------CCHHHHHHHHHh-cCCCEEEEecccCCCcHHH-HHHHH
Confidence 457899887764 35668888888 8987 4432 233344444533 5689888753 24443 34445
Q ss_pred Hhc-CCCCcEEEEeCHH-HH---HHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhC
Q 026235 122 KEA-GTPNVRIGVVGAG-TA---SIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (241)
Q Consensus 122 ~~~-~~~~~~i~aIG~~-Ta---~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~ 174 (241)
.+. ...+++++.+... .. ..+.+. |.. ++..+..+.+.|.+.+...
T Consensus 77 ~~~~~~~~~~ii~~s~~~~~~~~~~~~~~------g~~-~~l~kP~~~~~l~~~i~~~ 127 (143)
T 3cnb_A 77 KSTPATANIIVIAMTGALTDDNVSRIVAL------GAE-TCFGKPLNFTLLEKTIKQL 127 (143)
T ss_dssp HTSTTTTTSEEEEEESSCCHHHHHHHHHT------TCS-EEEESSCCHHHHHHHHHHH
T ss_pred HhCccccCCcEEEEeCCCCHHHHHHHHhc------CCc-EEEeCCCCHHHHHHHHHHH
Confidence 442 2356777766432 22 333445 766 4667778999998888653
No 234
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Probab=56.11 E-value=25 Score=29.25 Aligned_cols=35 Identities=14% Similarity=0.093 Sum_probs=24.0
Q ss_pred CCCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEe
Q 026235 45 SASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (241)
Q Consensus 45 ~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (241)
..++.||++|||....+ ...+++.|.+.|++|...
T Consensus 28 ~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~ 63 (281)
T 4dry_A 28 KGSGEGRIALVTGGGTGVGRGIAQALSAEGYSVVIT 63 (281)
T ss_dssp ------CEEEETTTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEE
Confidence 45678999999988754 678899999999987653
No 235
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=55.93 E-value=5.9 Score=31.50 Aligned_cols=60 Identities=18% Similarity=0.158 Sum_probs=36.3
Q ss_pred cEEEEEccCCCc------hhHHHHHHhCCCeeeEeeeeeeecCC----------------CChHHHHHHcCCCCEEEEEC
Q 026235 179 CTVLYPASAKAS------NEIEEGLSNRGFEVVRLNTYTTEPVH----------------HVDQTVLKQALSIPVVAVAS 236 (241)
Q Consensus 179 ~~iL~~~g~~~~------~~L~~~L~~~G~~V~~~~vY~~~~~~----------------~~~~~~~~~l~~id~IvFtS 236 (241)
.++|++.+.... +.+.+.|++.|++|..+.+++..+.. +......+.+...|+|+|-|
T Consensus 7 mkilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ii~gs 86 (211)
T 1ydg_A 7 VKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEAIVFSS 86 (211)
T ss_dssp CEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEECCCCSCHHHHTTCHHHHHHHHHTTTSCBCCHHHHHHCSEEEEEE
T ss_pred CeEEEEEECCCChHHHHHHHHHHHHhcCCCEEEEEeccccccchhhhcccccccccccccchhHHHHHHHHHCCEEEEEc
Confidence 467777665433 34667777788888888888751100 10011222345789999999
Q ss_pred Cc
Q 026235 237 PS 238 (241)
Q Consensus 237 ps 238 (241)
|.
T Consensus 87 P~ 88 (211)
T 1ydg_A 87 PT 88 (211)
T ss_dssp EE
T ss_pred Cc
Confidence 84
No 236
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=55.64 E-value=58 Score=29.92 Aligned_cols=114 Identities=11% Similarity=0.052 Sum_probs=68.6
Q ss_pred CCeEEEeCCCCChHHHHHHHHHCCCcEEEece-------------EEEeeCC-CchHHHHHHhcCCCccEEEEeCHHHHH
Q 026235 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPL-------------IQHAQGP-DTDRLSSVLNADTIFDWIIITSPEAGS 115 (241)
Q Consensus 50 g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~-------------~~~~~~~-~~~~l~~~l~~l~~~d~IiFTS~~aV~ 115 (241)
.++|+|.....-...+.+.|.+.|.++..+.. +.....+ ..++..+.. .+.++|.++.|......
T Consensus 127 ~~hviI~G~g~~g~~la~~L~~~~~~vvvid~~~~~~~~~~~~~~~~~i~Gd~~~~~~L~~a-~i~~a~~vi~t~~D~~n 205 (565)
T 4gx0_A 127 RGHILIFGIDPITRTLIRKLESRNHLFVVVTDNYDQALHLEEQEGFKVVYGSPTDAHVLAGL-RVAAARSIIANLSDPDN 205 (565)
T ss_dssp CSCEEEESCCHHHHHHHHHTTTTTCCEEEEESCHHHHHHHHHSCSSEEEESCTTCHHHHHHT-TGGGCSEEEECSCHHHH
T ss_pred CCeEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCCeEEEeCCCCHHHHHhc-CcccCCEEEEeCCcHHH
Confidence 46688887776677888888888877654421 1111111 112222222 45788999998887766
Q ss_pred HHHHHH-HhcCCCCcEEEEe--CHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhh
Q 026235 116 VFLEAW-KEAGTPNVRIGVV--GAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (241)
Q Consensus 116 ~f~~~l-~~~~~~~~~i~aI--G~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~ 172 (241)
...-.. ++.+ +.++++. -+...+.|++. |....+.|+...+..|++.+.
T Consensus 206 ~~~~~~ar~~~--~~~iiar~~~~~~~~~l~~~------Gad~vi~p~~~~~~~la~~~~ 257 (565)
T 4gx0_A 206 ANLCLTVRSLC--QTPIIAVVKEPVHGELLRLA------GANQVVPLTRILGRYLGIRAT 257 (565)
T ss_dssp HHHHHHHHTTC--CCCEEEECSSGGGHHHHHHH------TCSEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CceEEEEECCHHHHHHHHHc------CCCEEEChHHHHHHHHHHHhc
Confidence 544332 2333 5666664 45677888888 998666666555566665553
No 237
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=55.54 E-value=9 Score=30.27 Aligned_cols=46 Identities=11% Similarity=0.099 Sum_probs=24.7
Q ss_pred HHHH-HHhCCCeeeEeeeeeeec--------CCCChHHHHHHcCCCCEEEEECCc
Q 026235 193 IEEG-LSNRGFEVVRLNTYTTEP--------VHHVDQTVLKQALSIPVVAVASPS 238 (241)
Q Consensus 193 L~~~-L~~~G~~V~~~~vY~~~~--------~~~~~~~~~~~l~~id~IvFtSps 238 (241)
+.+. |++.|+++..+.+++... ..+...++.+.+...|+|+|.||.
T Consensus 25 i~~~~l~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~ii~~sP~ 79 (197)
T 2vzf_A 25 ALAHVLARSDSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCNADGLIVATPI 79 (197)
T ss_dssp HHHHHHHHSSEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHHCSEEEEEEEC
T ss_pred HHHHHHHHCCCeEEEEEccccCchhhcccccCcHHHHHHHHHHHHCCEEEEEeCc
Confidence 4455 566677776666654311 011112233345678888888874
No 238
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.46 E-value=17 Score=26.70 Aligned_cols=33 Identities=6% Similarity=-0.080 Sum_probs=28.1
Q ss_pred CCCCCCCeEEEeCCCC--ChHHHHHHHHHCCCcEE
Q 026235 45 SASNSNPKVVVTRERG--KNGKLIKALAKHRIDCL 77 (241)
Q Consensus 45 ~~~l~g~~VLitR~~~--~~~~l~~~L~~~G~~v~ 77 (241)
..++.|++|++|..-. .++++.+.++++|+.|.
T Consensus 20 ~~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Ggkv~ 54 (112)
T 2ebu_A 20 ENCLEGLIFVITGVLESIERDEAKSLIERYGGKVT 54 (112)
T ss_dssp SSSSTTCEEEECSCCSSSCHHHHHHHHHHTTCEEC
T ss_pred CCCcCCCEEEEeeeCCCCCHHHHHHHHHHcCCEEe
Confidence 3478999999998864 58999999999998876
No 239
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=55.41 E-value=27 Score=25.86 Aligned_cols=61 Identities=25% Similarity=0.244 Sum_probs=38.9
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHH--------HHHHHHHHHhc--CCCCcEEE
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA--------GSVFLEAWKEA--GTPNVRIG 132 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~a--------V~~f~~~l~~~--~~~~~~i~ 132 (241)
+.+++.|.+.|+++..+.. .+ ..++..+|.|+|-+|.- ++.|++.+... .+.+.+++
T Consensus 20 ~~ia~~l~~~g~~v~~~~~------~~-------~~~l~~~d~vi~g~pt~g~g~~p~~~~~f~~~l~~~~~~l~~~~~a 86 (147)
T 2hna_A 20 EHLAEKLEEAGFTTETLHG------PL-------LEDLPASGIWLVISSTHGAGDIPDNLSPFYEALQEQKPDLSAVRFG 86 (147)
T ss_dssp HHHHHHHHHTTCCEEEECC------TT-------SCSSCSEEEEEEECCTTTTCCTTSSCHHHHHHHHHHCCCTTEEEEE
T ss_pred HHHHHHHHHCCCceEEecC------CC-------HHHcccCCeEEEEECccCCCCCChhHHHHHHHHHhhccccCCCEEE
Confidence 4455556667888765432 11 12457899988887753 57788877654 45667788
Q ss_pred EeCH
Q 026235 133 VVGA 136 (241)
Q Consensus 133 aIG~ 136 (241)
++|-
T Consensus 87 vfg~ 90 (147)
T 2hna_A 87 AIGI 90 (147)
T ss_dssp EESC
T ss_pred EEec
Confidence 7773
No 240
>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}
Probab=55.32 E-value=2.7 Score=36.87 Aligned_cols=167 Identities=12% Similarity=0.076 Sum_probs=87.0
Q ss_pred CeEEEeCCCCC-hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCCCCc
Q 026235 51 PKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNV 129 (241)
Q Consensus 51 ~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~ 129 (241)
|+||++..... -..+.+.|++.+.++...+. ... .+ +.+ .++|.++..+..-+. .+.+.. .+++
T Consensus 1 Mkil~~~~~~~~~p~~~e~l~~~~~~~~~~~~---~~~--~~---~~l---~~ad~i~v~~~~~i~--~~~l~~--~p~L 65 (334)
T 3kb6_A 1 MNVLFTSVPQEDVPFYQEALKDLSLKIYTTDV---SKV--PE---NEL---KKAELISVFVYDKLT--EELLSK--MPRL 65 (334)
T ss_dssp -CEEECSCCTTHHHHHHHHTTTSCEEECSSCG---GGS--CH---HHH---HHCSEEEECTTSCBC--HHHHHT--CTTC
T ss_pred CEEEEeCCCcccCHHHHHHHHhCCcEEEeCCc---ccC--CH---HHh---cCCCEEEEeCCCCCC--HHHHhc--CCCC
Confidence 57888864433 33456677776654432211 111 11 122 356888766543221 122222 2445
Q ss_pred EEEE-eCHHH----HHHHHHhhhccCCCCceeecCCCCCHHHHHHHhh-------h----------------------CC
Q 026235 130 RIGV-VGAGT----ASIFEEVIQSSKCSLDVAFSPSKATGKILASELP-------K----------------------NG 175 (241)
Q Consensus 130 ~i~a-IG~~T----a~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~-------~----------------------~~ 175 (241)
++++ .|-++ .+++++. |+.+.-.| ...++.++|... + ..
T Consensus 66 k~I~~~~~G~d~id~~~~~~~------gI~v~n~p-~~~~~~vAE~~~~l~L~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 138 (334)
T 3kb6_A 66 KLIHTRSVGFDHIDLDYCKKK------GILVTHIP-AYSPESVAEHTFAMILTLVKRLKRIEDRVKKLNFSQDSEILARE 138 (334)
T ss_dssp CEEEESSSCCTTBCHHHHHHH------TCEEECCT-TSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCGGGCBCC
T ss_pred cEEEECCcccchhcHHHHHHC------CCEEEECC-CcCcHHHHHHHHHHHHHHhhccccccccccccccccccccccce
Confidence 5544 34333 5678888 99875555 456666554311 0 01
Q ss_pred CCccEEEEEccCCCchhHHHHHHhCCCeeeEeeeeeeecCCC---ChHHHHHHcCCCCEEEEECCcc
Q 026235 176 KKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHH---VDQTVLKQALSIPVVAVASPSA 239 (241)
Q Consensus 176 ~~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~---~~~~~~~~l~~id~IvFtSps~ 239 (241)
..++++.++........+.+.++.-|.+|..+..|....... ....+.+.+.+.|+|++.-|.+
T Consensus 139 l~g~tvGIiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~~~~~~~~~l~ell~~sDivslh~Plt 205 (334)
T 3kb6_A 139 LNRLTLGVIGTGRIGSRVAMYGLAFGMKVLCYDVVKREDLKEKGCVYTSLDELLKESDVISLHVPYT 205 (334)
T ss_dssp GGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHTTCEECCHHHHHHHCSEEEECCCCC
T ss_pred ecCcEEEEECcchHHHHHHHhhcccCceeeecCCccchhhhhcCceecCHHHHHhhCCEEEEcCCCC
Confidence 235678777655556678899999998876544443211100 0001222236789999988754
No 241
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=55.17 E-value=55 Score=26.61 Aligned_cols=87 Identities=15% Similarity=0.047 Sum_probs=50.9
Q ss_pred CCCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEE----EeCHHHHHHHHH
Q 026235 45 SASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII----ITSPEAGSVFLE 119 (241)
Q Consensus 45 ~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~Ii----FTS~~aV~~f~~ 119 (241)
...+.||++|||..... ...+++.|.++|++|...- +.. ...+.+.+.+...+..+..+ +|+..+++.+++
T Consensus 5 m~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~--r~~--~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~ 80 (262)
T 3pk0_A 5 MFDLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAG--RST--ADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAG 80 (262)
T ss_dssp TTCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEE--SCH--HHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEe--CCH--HHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHH
Confidence 45688999999988754 6789999999999876431 110 11122333333332223333 378889998887
Q ss_pred HHHhc-CCCCcEEEEeC
Q 026235 120 AWKEA-GTPNVRIGVVG 135 (241)
Q Consensus 120 ~l~~~-~~~~~~i~aIG 135 (241)
.+.+. +.-+.-|.+.|
T Consensus 81 ~~~~~~g~id~lvnnAg 97 (262)
T 3pk0_A 81 RAVEEFGGIDVVCANAG 97 (262)
T ss_dssp HHHHHHSCCSEEEECCC
T ss_pred HHHHHhCCCCEEEECCC
Confidence 66442 32344444444
No 242
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=55.05 E-value=1.1e+02 Score=26.85 Aligned_cols=32 Identities=19% Similarity=0.114 Sum_probs=27.2
Q ss_pred CCCeEEEeCCCCChHHHHHHHHHCCCcEEEec
Q 026235 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELP 80 (241)
Q Consensus 49 ~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P 80 (241)
.+++|+|..+..-...+...++++|+++..+.
T Consensus 23 ~~~~I~ilGgG~lg~~l~~aa~~lG~~v~~~d 54 (403)
T 3k5i_A 23 NSRKVGVLGGGQLGRMLVESANRLNIQVNVLD 54 (403)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence 47899999887777889999999999988765
No 243
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=54.97 E-value=16 Score=25.79 Aligned_cols=34 Identities=12% Similarity=0.071 Sum_probs=28.5
Q ss_pred cCCCCCCCeEEEeCCCC-ChHHHHHHHHHCCCcEE
Q 026235 44 ASASNSNPKVVVTRERG-KNGKLIKALAKHRIDCL 77 (241)
Q Consensus 44 ~~~~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~ 77 (241)
...++.|++|++|..-. .++++.+.++++|+.+.
T Consensus 4 ~~~~l~G~~~v~TG~l~~~R~e~~~~i~~~Gg~v~ 38 (92)
T 1l7b_A 4 GGEALKGLTFVITGELSRPREEVKALLRRLGAKVT 38 (92)
T ss_dssp CCCSSTTCEEECSTTTTSCHHHHHHHHHHTTCEEE
T ss_pred CCCCcCCcEEEEecCCCCCHHHHHHHHHHcCCEEe
Confidence 35679999999997754 68889999999999876
No 244
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=54.82 E-value=9.4 Score=31.36 Aligned_cols=56 Identities=16% Similarity=0.106 Sum_probs=38.5
Q ss_pred cEEEEEccCCC------c------hhHHHHHHhCCCeeeEeeeeeeecCCCChHHHHHHcCCCCEEEEECCc
Q 026235 179 CTVLYPASAKA------S------NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPS 238 (241)
Q Consensus 179 ~~iL~~~g~~~------~------~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~l~~id~IvFtSps 238 (241)
.++|++-|.-. + +.+.+.|++.|.+|..+.+++. ....+..+.+...|+|||.+|.
T Consensus 26 ~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~~g~ev~~~dL~~~----~Dv~~~~~~l~~aD~iv~~~P~ 93 (218)
T 3rpe_A 26 SNVLIINAMKEFAHSKGALNLTLTNVAADFLRESGHQVKITTVDQG----YDIESEIENYLWADTIIYQMPA 93 (218)
T ss_dssp CCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHHTTCCEEEEEGGGC----CCHHHHHHHHHHCSEEEEEEEC
T ss_pred cceEEEEeCCCcccCCChHHHHHHHHHHHHHhhCCCEEEEEECCCc----cCHHHHHHHHHhCCEEEEECCh
Confidence 47888777642 1 2456677788999999988862 1233344556789999999884
No 245
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A
Probab=54.31 E-value=1e+02 Score=26.35 Aligned_cols=60 Identities=13% Similarity=0.169 Sum_probs=38.0
Q ss_pred CccEEEEEccCCCchhHHHHHHhCCCeeeEeeeeeeecCCC--Ch-----HHHHHHcCCCCEEEEECCcc
Q 026235 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHH--VD-----QTVLKQALSIPVVAVASPSA 239 (241)
Q Consensus 177 ~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~--~~-----~~~~~~l~~id~IvFtSps~ 239 (241)
.|+++.++.-..-...+.+.|+..|++|. .|.+.+... .. ..+.+.+.+.|+|++.-|.+
T Consensus 138 ~g~tvGIiG~G~IG~~vA~~l~~~G~~V~---~~dr~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt 204 (315)
T 3pp8_A 138 EEFSVGIMGAGVLGAKVAESLQAWGFPLR---CWSRSRKSWPGVESYVGREELRAFLNQTRVLINLLPNT 204 (315)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHTTTCCEE---EEESSCCCCTTCEEEESHHHHHHHHHTCSEEEECCCCC
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHCCCEEE---EEcCCchhhhhhhhhcccCCHHHHHhhCCEEEEecCCc
Confidence 46788888555555678899999997664 454433221 10 23333347899999987743
No 246
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=54.26 E-value=13 Score=29.61 Aligned_cols=63 Identities=11% Similarity=0.183 Sum_probs=41.1
Q ss_pred CCcEEEeceEEEeeC--------CCchHHHHHHhcCCCccEEEEeCH-------HHHHHHHHHHHhcCCCCcEEEEeC
Q 026235 73 RIDCLELPLIQHAQG--------PDTDRLSSVLNADTIFDWIIITSP-------EAGSVFLEAWKEAGTPNVRIGVVG 135 (241)
Q Consensus 73 G~~v~~~P~~~~~~~--------~~~~~l~~~l~~l~~~d~IiFTS~-------~aV~~f~~~l~~~~~~~~~i~aIG 135 (241)
|+++..+.+.+.... ...+.+.+.++.+...|.|||.|| ...++|++.+....+.+++++.++
T Consensus 48 g~eve~idL~d~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~ivi~sP~Y~~~~~~~lK~~iD~~~~~~l~gK~~~~v~ 125 (191)
T 3k1y_A 48 ALSVSTIELSELIPDLMTAMTTRVHTTKLEEITSALSASDGLVVATPVFKASYTGLFKMFFDILDTDALTGMPTIIAA 125 (191)
T ss_dssp CEEEEEEEGGGCHHHHTTTTSSSCCCHHHHHHHHHHHHCSEEEEEEECBTTBSCHHHHHHHHHSCTTTTTTCEEEEEE
T ss_pred CceEEEEEHHhCCCcccChhhcCCCCHHHHHHHHHHHHCCEEEEEcCccCCcCcHHHHHHHHHhhhhhcCCCEEEEEE
Confidence 777777666544310 012455566666788999999997 468888887754445666666654
No 247
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=54.22 E-value=39 Score=27.53 Aligned_cols=34 Identities=12% Similarity=0.075 Sum_probs=27.5
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEe
Q 026235 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (241)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (241)
..+.||++|||....+ ...+++.|.++|++|...
T Consensus 4 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~ 38 (259)
T 3edm_A 4 QRFTNRTIVVAGAGRDIGRACAIRFAQEGANVVLT 38 (259)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 4578999999988754 678999999999987643
No 248
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=54.13 E-value=19 Score=28.37 Aligned_cols=72 Identities=15% Similarity=0.000 Sum_probs=43.6
Q ss_pred CeEEEeCCCC----ChHHHHHHHHH---CCCcEEEeceEEEeeCC-------CchHHHHHHhcCCCccEEEEeCH-----
Q 026235 51 PKVVVTRERG----KNGKLIKALAK---HRIDCLELPLIQHAQGP-------DTDRLSSVLNADTIFDWIIITSP----- 111 (241)
Q Consensus 51 ~~VLitR~~~----~~~~l~~~L~~---~G~~v~~~P~~~~~~~~-------~~~~l~~~l~~l~~~d~IiFTS~----- 111 (241)
++||+.-+.. .+..+.+.+.+ .|+++..+.+.+. |.- ..+.+.+..+.+..+|.|||.||
T Consensus 3 ~kilii~gS~r~~s~t~~la~~~~~~~~~~~~v~~~dl~~l-p~~~~~~~~~~~~~~~~~~~~i~~AD~iV~~sP~y~~~ 81 (192)
T 3fvw_A 3 KRILFIVGSFSEGSFNRQLAKKAETIIGDRAQVSYLSYDRV-PFFNQDLETSVHPEVAHAREEVQEADAIWIFSPVYNYA 81 (192)
T ss_dssp CEEEEEESCCSTTCHHHHHHHHHHHHHTTSSEEEECCCSSC-CCCCGGGTTSCCHHHHHHHHHHHHCSEEEEECCCBTTB
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHhcCCCCEEEEEeCccC-CCCCcccccCCcHHHHHHHHHHHhCCEEEEECcccccC
Confidence 4565543332 23445554432 4778887776653 211 12334555556678999999997
Q ss_pred --HHHHHHHHHHHh
Q 026235 112 --EAGSVFLEAWKE 123 (241)
Q Consensus 112 --~aV~~f~~~l~~ 123 (241)
...+.|++.+..
T Consensus 82 ~p~~lK~~iD~~~~ 95 (192)
T 3fvw_A 82 IPGPVKNLLDWLSR 95 (192)
T ss_dssp CCHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHhhc
Confidence 578999998764
No 249
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=54.11 E-value=54 Score=26.57 Aligned_cols=89 Identities=10% Similarity=-0.003 Sum_probs=54.8
Q ss_pred CCeEEEeCCCCC-------hHHHHHHHHHCCCcEEEeceEEEeeC--CCchHHHHHHhcCCCccEEEEeCHHHHHHHHHH
Q 026235 50 NPKVVVTRERGK-------NGKLIKALAKHRIDCLELPLIQHAQG--PDTDRLSSVLNADTIFDWIIITSPEAGSVFLEA 120 (241)
Q Consensus 50 g~~VLitR~~~~-------~~~l~~~L~~~G~~v~~~P~~~~~~~--~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~ 120 (241)
.++|++..+... ..-+.+.|+++|..+....+...... .....+.+.+..-..+|+|+.++-.....+.+.
T Consensus 125 ~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~a 204 (291)
T 3egc_A 125 HTRIGAIVGSAGLMTSRERLKGFRAAMSAAGLPVRQEWIAAGGVRADNGRDGAIKVLTGADRPTALLTSSHRITEGAMQA 204 (291)
T ss_dssp CCSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEC------CCHHHHHHHHTC-CCCSEEEESSHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcCHHHHHHHHHHHHHHcCCCCCHHHeEeCCCChhHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHH
Confidence 456766654432 23356678888876543222221111 113456666655578999999998888888888
Q ss_pred HHhcCCC---CcEEEEeCHHH
Q 026235 121 WKEAGTP---NVRIGVVGAGT 138 (241)
Q Consensus 121 l~~~~~~---~~~i~aIG~~T 138 (241)
+.+.++. ++.++.++..-
T Consensus 205 l~~~g~~vP~di~vvg~d~~~ 225 (291)
T 3egc_A 205 LNVLGLRYGPDVEIVSFDNLP 225 (291)
T ss_dssp HHHHTCCBTTTBEEEEESCCG
T ss_pred HHHcCCCCCCceEEEEecCch
Confidence 8888763 78888887543
No 250
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=54.04 E-value=52 Score=27.04 Aligned_cols=116 Identities=9% Similarity=0.018 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcC--CCccEEEEeCHHHH--HHHHHHHHhcCCCCcEEEEeCHHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD--TIFDWIIITSPEAG--SVFLEAWKEAGTPNVRIGVVGAGT 138 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l--~~~d~IiFTS~~aV--~~f~~~l~~~~~~~~~i~aIG~~T 138 (241)
..+.+.++++|+++..... ..+.+...+.++.+ ..+|.||+.....- ....+.+.+ .++++++++...
T Consensus 22 ~gi~~~a~~~g~~~~~~~~-----~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~---~~iPvV~~~~~~ 93 (313)
T 3m9w_A 22 DIFVKKAESLGAKVFVQSA-----NGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVKEAKQ---EGIKVLAYDRMI 93 (313)
T ss_dssp HHHHHHHHHTSCEEEEEEC-----TTCHHHHHHHHHHHHHTTCSEEEEECSSTTSCHHHHHHHHT---TTCEEEEESSCC
T ss_pred HHHHHHHHHcCCEEEEECC-----CCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHHHH---CCCeEEEECCcC
Q ss_pred HHHHHHhhhccCCCC-ceeecCCCCCHHHHHHHhh-hCCCCccEEEEEccCCCchhHHHHHH
Q 026235 139 ASIFEEVIQSSKCSL-DVAFSPSKATGKILASELP-KNGKKKCTVLYPASAKASNEIEEGLS 198 (241)
Q Consensus 139 a~~L~~~~~~~~~Gi-~~~~~p~~~t~e~L~~~l~-~~~~~~~~iL~~~g~~~~~~L~~~L~ 198 (241)
.. . ++ .....-....+..+++.|. +... ++|+++.|........+.++
T Consensus 94 ~~----~------~~~~~V~~D~~~~g~~a~~~L~~~~G~--~~i~~i~g~~~~~~~~~R~~ 143 (313)
T 3m9w_A 94 ND----A------DIDFYISFDNEKVGELQAKALVDIVPQ--GNYFLMGGSPVDNNAKLFRA 143 (313)
T ss_dssp TT----S------CCSEEEEECHHHHHHHHHHHHHHHCSS--EEEEEEESCTTCHHHHHHHH
T ss_pred CC----C------CceEEEecCHHHHHHHHHHHHHHhCCC--CcEEEEECCCCCccHHHHHH
No 251
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=53.97 E-value=11 Score=29.55 Aligned_cols=58 Identities=26% Similarity=0.198 Sum_probs=31.6
Q ss_pred EEEEEccCCCc-----hhHHHHHHhCCCeeeEeeeeeeecC----------C--CChHHHHHHcCCCCEEEEECCc
Q 026235 180 TVLYPASAKAS-----NEIEEGLSNRGFEVVRLNTYTTEPV----------H--HVDQTVLKQALSIPVVAVASPS 238 (241)
Q Consensus 180 ~iL~~~g~~~~-----~~L~~~L~~~G~~V~~~~vY~~~~~----------~--~~~~~~~~~l~~id~IvFtSps 238 (241)
+++++.+..+. +.+.+.|++.|++|..+.+++..+. + ..... .+.+...|+|+|.||.
T Consensus 6 kilii~~S~g~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~d~~~~~~-~~~l~~aD~ii~gsP~ 80 (199)
T 2zki_A 6 NILVLFYGYGSIVELAKEIGKGAEEAGAEVKIRRVRETLPPEFQSRIPFDKVKDIPEVT-LDDMRWADGFAIGSPT 80 (199)
T ss_dssp EEEEEECCSSHHHHHHHHHHHHHHHHSCEEEEEECCCCSCGGGGTTCCGGGSTTSCBCC-HHHHHHCSEEEEEEEC
T ss_pred EEEEEEeCccHHHHHHHHHHHHHHhCCCEEEEEehhHhCChhhhhccCCCccccccccc-HHHHHhCCEEEEECCc
Confidence 56665555222 2355566667777777777665100 0 00101 2234578999998884
No 252
>2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, P structure initiative; 2.25A {Salmonella typhimurium} SCOP: c.23.16.9
Probab=53.77 E-value=9.8 Score=31.79 Aligned_cols=47 Identities=19% Similarity=0.244 Sum_probs=30.6
Q ss_pred CCCChHHHHHHHHHCCCcEEEeceEEEe-eCCCchHHHHHHhcCCCccEEEEeC
Q 026235 58 ERGKNGKLIKALAKHRIDCLELPLIQHA-QGPDTDRLSSVLNADTIFDWIIITS 110 (241)
Q Consensus 58 ~~~~~~~l~~~L~~~G~~v~~~P~~~~~-~~~~~~~l~~~l~~l~~~d~IiFTS 110 (241)
.......+.++|+..|+++..++.-+.. ..++. ++.+.+||.|||.-
T Consensus 38 ~~~~~~~l~~aL~~~~~~v~~~~~~~~~~~fp~~------~~~L~~yDvIIl~~ 85 (256)
T 2gk3_A 38 YEEGATWLLECLRKGGVDIDYMPAHTVQIAFPES------IDELNRYDVIVISD 85 (256)
T ss_dssp EEESCHHHHHHHHHTTCEEEEECHHHHHHCCCCS------HHHHHTCSEEEEES
T ss_pred ccccHHHHHHHHHhcCceEEEEecccchhhCCcC------hhHHhcCCEEEEeC
Confidence 3346778999999999999988642110 11111 11346899999985
No 253
>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*
Probab=53.74 E-value=73 Score=26.38 Aligned_cols=150 Identities=15% Similarity=0.150 Sum_probs=80.3
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEE--EeCHHHHHHHHHHHH
Q 026235 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII--ITSPEAGSVFLEAWK 122 (241)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~Ii--FTS~~aV~~f~~~l~ 122 (241)
..|+||.+|||....+ ...+++.|.+.|+.|...- +.. ++.+.+++..+.-.+..++. +|+...++.+++...
T Consensus 3 ~~L~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~--r~~--~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~ 78 (258)
T 4gkb_A 3 LNLQDKVVIVTGGASGIGGAISMRLAEERAIPVVFA--RHA--PDGAFLDALAQRQPRATYLPVELQDDAQCRDAVAQTI 78 (258)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE--SSC--CCHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEE--CCc--ccHHHHHHHHhcCCCEEEEEeecCCHHHHHHHHHHHH
Confidence 4689999999988754 5678899999999887542 211 12222222222223333332 388999998887654
Q ss_pred h-cCCCCcEEEEeCH-------HHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEccCCCc----
Q 026235 123 E-AGTPNVRIGVVGA-------GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKAS---- 190 (241)
Q Consensus 123 ~-~~~~~~~i~aIG~-------~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~~~~~~iL~~~g~~~~---- 190 (241)
+ .+.-++-|-..|- .|.+..++.+ .+.+...-......+..|++. +.+|+...+-.+.
T Consensus 79 ~~~G~iDiLVNnAGi~~~~~~~~~~e~~~~~~-------~vNl~g~~~~~~~~~p~m~~~---~G~IVnisS~~~~~~~~ 148 (258)
T 4gkb_A 79 ATFGRLDGLVNNAGVNDGIGLDAGRDAFVASL-------ERNLIHYYAMAHYCVPHLKAT---RGAIVNISSKTAVTGQG 148 (258)
T ss_dssp HHHSCCCEEEECCCCCCCCCTTSCHHHHHHHH-------HHHTHHHHHHHHHHHHHHHHH---TCEEEEECCTHHHHCCS
T ss_pred HHhCCCCEEEECCCCCCCCCccCCHHHHHHHH-------HHHhHHHHHHHHHHHHHHHhc---CCeEEEEeehhhccCCC
Confidence 4 3322333333331 2223332221 111111111233344444322 3577777653211
Q ss_pred ----------------hhHHHHHHhCCCeeeEeee
Q 026235 191 ----------------NEIEEGLSNRGFEVVRLNT 209 (241)
Q Consensus 191 ----------------~~L~~~L~~~G~~V~~~~v 209 (241)
..|..+|...|++|..+..
T Consensus 149 ~~~~Y~asKaav~~ltr~lA~ela~~gIrVN~V~P 183 (258)
T 4gkb_A 149 NTSGYCASKGAQLALTREWAVALREHGVRVNAVIP 183 (258)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEE
T ss_pred CchHHHHHHHHHHHHHHHHHHHhcccCeEEEEEec
Confidence 2566778889999988765
No 254
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=53.55 E-value=11 Score=29.25 Aligned_cols=29 Identities=17% Similarity=0.142 Sum_probs=18.8
Q ss_pred HHHHHhcCCCccEEEEeCH-------HHHHHHHHHH
Q 026235 93 LSSVLNADTIFDWIIITSP-------EAGSVFLEAW 121 (241)
Q Consensus 93 l~~~l~~l~~~d~IiFTS~-------~aV~~f~~~l 121 (241)
+....+.+..+|.|||.|| ..++.|++.+
T Consensus 75 ~~~~~~~l~~aD~iI~~sP~y~~~~p~~lK~~iD~~ 110 (191)
T 1t0i_A 75 TRSWSRIVNALDIIVFVTPQYNWGYPAALKNAIDRL 110 (191)
T ss_dssp HHHHHHHHHTCSEEEEEEECBTTBCCHHHHHHHHTC
T ss_pred HHHHHHHHHhCCEEEEEeceECCCCCHHHHHHHHHH
Confidence 3344445578899999885 4566666644
No 255
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=53.27 E-value=9.5 Score=32.12 Aligned_cols=34 Identities=21% Similarity=0.365 Sum_probs=23.6
Q ss_pred EEEEEccCCCc--------hhHHHHHHhCCCeeeEeeeeeee
Q 026235 180 TVLYPASAKAS--------NEIEEGLSNRGFEVVRLNTYTTE 213 (241)
Q Consensus 180 ~iL~~~g~~~~--------~~L~~~L~~~G~~V~~~~vY~~~ 213 (241)
++|++.|.-.. +.+.+.|++.|.+|..+.+|+..
T Consensus 4 kiLiI~gSpr~~s~t~~la~~~~~~l~~~g~eV~~~dL~~~~ 45 (273)
T 1d4a_A 4 RALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLYAMN 45 (273)
T ss_dssp EEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEETTTTT
T ss_pred EEEEEEeCCCCccHHHHHHHHHHHHHHhCCCeEEEEEccccC
Confidence 56777665432 24556677889999999999764
No 256
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=53.26 E-value=58 Score=27.39 Aligned_cols=155 Identities=10% Similarity=0.080 Sum_probs=77.1
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCch-HHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTD-RLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~-~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~ 141 (241)
.-+.+.++++|+++..... ....+.. .++..+ . ..+|.||+++..--..+.....+ .++++++.++.....
T Consensus 27 ~Gi~~~~~~~g~~~~~~~~---~~~~~~~~~l~~l~-~-~~~dgIi~~~~~~~~~~~~~a~~--~p~~p~v~id~~~~~- 98 (318)
T 2fqx_A 27 EGISRFAQENNAKCKYVTA---STDAEYVPSLSAFA-D-ENMGLVVACGSFLVEAVIETSAR--FPKQKFLVIDAVVQD- 98 (318)
T ss_dssp HHHHHHHHHTTCEEEEEEC---CSGGGHHHHHHHHH-H-TTCSEEEEESTTTHHHHHHHHHH--CTTSCEEEESSCCCS-
T ss_pred HHHHHHHHHhCCeEEEEeC---CCHHHHHHHHHHHH-H-cCCCEEEECChhHHHHHHHHHHH--CCCCEEEEEcCccCC-
Confidence 3455667788987654322 1111111 233332 2 57999999985433333333332 256889998753110
Q ss_pred HHHhhhccCCCCceeecCCCCCHHHHH----HHhhhCCCCc--cEEEEEccCCCc------hhHHHHHHhCCCeeeEeee
Q 026235 142 FEEVIQSSKCSLDVAFSPSKATGKILA----SELPKNGKKK--CTVLYPASAKAS------NEIEEGLSNRGFEVVRLNT 209 (241)
Q Consensus 142 L~~~~~~~~~Gi~~~~~p~~~t~e~L~----~~l~~~~~~~--~~iL~~~g~~~~------~~L~~~L~~~G~~V~~~~v 209 (241)
.. .+.. +..+.+.+.-++ ..+.+. | ++|.++.|.... .-..+.+++.|.++....+
T Consensus 99 --~~------~~~~-v~~d~~~~~~lag~~a~~l~~~---Gh~r~Ig~i~g~~~~~~~~r~~Gf~~~~~~~~~~~~~~~~ 166 (318)
T 2fqx_A 99 --RD------NVVS-AVFGQNEGSFLVGVAAALKAKE---AGKSAVGFIVGMELGMMPLFEAGFEAGVKAVDPDIQVVVE 166 (318)
T ss_dssp --CT------TEEE-EEECHHHHHHHHHHHHHHHHHH---TTCCEEEEEESCCSTTTHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred --CC------CEEE-EEechHHHHHHHHHHHHHHhcc---CCCcEEEEEeCcccHHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 11 2222 233333333332 344432 3 589999775322 1245677777877666556
Q ss_pred eeeecCC-CChHHHHHH-c-CCCCEEEEECC
Q 026235 210 YTTEPVH-HVDQTVLKQ-A-LSIPVVAVASP 237 (241)
Q Consensus 210 Y~~~~~~-~~~~~~~~~-l-~~id~IvFtSp 237 (241)
|...... ....+..+. + ..+|+|+-.+-
T Consensus 167 ~~~~~~~~~~g~~~a~~ll~~~~daI~~~~d 197 (318)
T 2fqx_A 167 VANTFSDPQKGQALAAKLYDSGVNVIFQVAG 197 (318)
T ss_dssp ECSCSSCHHHHHHHHHHHHHTTCCEEEEECG
T ss_pred EccCccCHHHHHHHHHHHHHCCCcEEEECCC
Confidence 6432211 111122222 2 46888776653
No 257
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=53.09 E-value=52 Score=22.54 Aligned_cols=109 Identities=13% Similarity=0.155 Sum_probs=60.9
Q ss_pred CeEEEeCCCC-ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEe----CHHHHHHHHHHHHhcC
Q 026235 51 PKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAWKEAG 125 (241)
Q Consensus 51 ~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFT----S~~aV~~f~~~l~~~~ 125 (241)
++||+.-... ....+...|++.|+++... .+..+..+.+ ....+|.|+.- ..++.+ +...+.+..
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~--------~~~~~a~~~~-~~~~~dlvi~D~~l~~~~g~~-~~~~l~~~~ 72 (127)
T 2jba_A 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEA--------EDYDSAVNQL-NEPWPDLILLAWMLPGGSGIQ-FIKHLRRES 72 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------CSHHHHHTTC-SSSCCSEEEEESEETTEEHHH-HHHHHHTST
T ss_pred cEEEEEcCCHHHHHHHHHHHHHCCceEEEe--------CCHHHHHHHH-hccCCCEEEEecCCCCCCHHH-HHHHHHhCc
Confidence 5788887654 3556788888888765422 2223222333 22468888753 234554 344454432
Q ss_pred -CCCcEEEEeCHHH-HHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhh
Q 026235 126 -TPNVRIGVVGAGT-ASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (241)
Q Consensus 126 -~~~~~i~aIG~~T-a~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~ 173 (241)
.++++++.+.... .+...+.+ ..|.. ++..+..+.+.|.+.+..
T Consensus 73 ~~~~~~ii~~s~~~~~~~~~~~~---~~ga~-~~l~Kp~~~~~l~~~i~~ 118 (127)
T 2jba_A 73 MTRDIPVVMLTARGEEEDRVRGL---ETGAD-DCITKPFSPKELVARIKA 118 (127)
T ss_dssp TTTTSCEEEEEETTHHHHHHTTC---CCSCS-EEEEESCCHHHHHHHHHH
T ss_pred ccCCCCEEEEeCCCCHHHHHHHH---hcCCC-eEEeCCCCHHHHHHHHHH
Confidence 2467776664433 33333221 11654 466677889999888754
No 258
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=52.76 E-value=52 Score=22.44 Aligned_cols=107 Identities=12% Similarity=0.080 Sum_probs=62.8
Q ss_pred CeEEEeCCCC-ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEe----CHHHHHHHHHHHHhcC
Q 026235 51 PKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAWKEAG 125 (241)
Q Consensus 51 ~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFT----S~~aV~~f~~~l~~~~ 125 (241)
++||+.-... ....+...|+..|+++... .+..+....+.. ..+|.|+.- ..++.+ +...+.+..
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~--------~~~~~a~~~~~~-~~~dlvi~D~~l~~~~g~~-~~~~l~~~~ 71 (124)
T 1mb3_A 2 KKVLIVEDNELNMKLFHDLLEAQGYETLQT--------REGLSALSIARE-NKPDLILMDIQLPEISGLE-VTKWLKEDD 71 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------SCHHHHHHHHHH-HCCSEEEEESBCSSSBHHH-HHHHHHHST
T ss_pred cEEEEEcCCHHHHHHHHHHHHHcCcEEEEe--------CCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHH-HHHHHHcCc
Confidence 5788887654 3566788888888765422 233333333422 468888763 234554 344455432
Q ss_pred -CCCcEEEEeCHHH----HHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhC
Q 026235 126 -TPNVRIGVVGAGT----ASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (241)
Q Consensus 126 -~~~~~i~aIG~~T----a~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~ 174 (241)
.+.++++.+.... ...+.+. |.. ++..+..+.+.|.+.+...
T Consensus 72 ~~~~~~ii~~s~~~~~~~~~~~~~~------g~~-~~l~KP~~~~~l~~~i~~~ 118 (124)
T 1mb3_A 72 DLAHIPVVAVTAFAMKGDEERIREG------GCE-AYISKPISVVHFLETIKRL 118 (124)
T ss_dssp TTTTSCEEEEC------CHHHHHHH------TCS-EEECSSCCHHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCHHHHHHHHhC------CCC-EEEeCCCCHHHHHHHHHHH
Confidence 3567777765432 2333456 766 5777888999998888653
No 259
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=52.72 E-value=18 Score=31.50 Aligned_cols=65 Identities=12% Similarity=0.047 Sum_probs=39.8
Q ss_pred HHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCH-------HHHHHHHHHHHhcCC---CCcEEEE
Q 026235 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP-------EAGSVFLEAWKEAGT---PNVRIGV 133 (241)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~-------~aV~~f~~~l~~~~~---~~~~i~a 133 (241)
.+++.+.+.|+++..+.+-+ .+...+. ..+.++|.|||-|| ..++.|++.+..... .++++++
T Consensus 276 ~i~~~l~~~g~~v~~~~~~~----~~~~~~~---~~l~~~d~iiigsP~y~~~~~~~~k~~ld~l~~~~~~~l~~k~~~~ 348 (404)
T 2ohh_A 276 AIAEGAMSEGVDVRVYCLHE----DDRSEIV---KDILESGAIALGAPTIYDEPYPSVGDLLMYLRGLKFNRTLTRKALV 348 (404)
T ss_dssp HHHHHHHTTTCEEEEEETTT----SCHHHHH---HHHHTCSEEEEECCEETTEECTHHHHHHHHHHHHCGGGTCCEEEEE
T ss_pred HHHHHHHhCCCeEEEEECCC----CCHHHHH---HHHHHCCEEEEECccccccchHHHHHHHHHhhhccccccCCCEEEE
Confidence 34445555677665443321 1122222 23468999999998 478999988765333 6777777
Q ss_pred eC
Q 026235 134 VG 135 (241)
Q Consensus 134 IG 135 (241)
+|
T Consensus 349 ~~ 350 (404)
T 2ohh_A 349 FG 350 (404)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 260
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}
Probab=52.48 E-value=20 Score=30.87 Aligned_cols=160 Identities=16% Similarity=0.146 Sum_probs=89.3
Q ss_pred eEEEeCCCCChHH----HHHHHHHCCCcEEEeceEEEeeCCCchHHHHHH---hcCCCccEEEEeCH--HHH--HHHHHH
Q 026235 52 KVVVTRERGKNGK----LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NADTIFDWIIITSP--EAG--SVFLEA 120 (241)
Q Consensus 52 ~VLitR~~~~~~~----l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l---~~l~~~d~IiFTS~--~aV--~~f~~~ 120 (241)
-|++....+.+.. -.+.+++.|++...+.+-+. ...+++.+.+ +.....|.|+..-| ..+ +...+.
T Consensus 39 avilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~---~s~~ell~~I~~lN~d~~v~GIlVqlPLP~~id~~~v~~~ 115 (286)
T 4a5o_A 39 AVILVGTDPASQVYVAHKRKDCEEVGFLSQAYDLPAE---TSQDDLLALIDRLNDDPAIDGILVQLPLPAHLDASLLLER 115 (286)
T ss_dssp EEEEESCCHHHHHHHHHHHHHHHHTTCEEEEEEECTT---CCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHHT
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEECCCC---CCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCcCHHHHHhh
Confidence 3555555544333 34567888988876544221 1234454444 44578999999877 221 122222
Q ss_pred HH-hcCCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCC--CCccEEEEEcc-CCCchhHHHH
Q 026235 121 WK-EAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYPAS-AKASNEIEEG 196 (241)
Q Consensus 121 l~-~~~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~--~~~~~iL~~~g-~~~~~~L~~~ 196 (241)
+. +...++. ++.-...|- . |-. .+.| -|+.+.++.|..+. ..|++++++-. +....-+...
T Consensus 116 I~p~KDVDG~-----~~~N~g~l~-~------g~~-~~~P--cTp~gv~~lL~~~~i~l~Gk~vvVvGrs~iVG~plA~l 180 (286)
T 4a5o_A 116 IHPDKDVDGF-----HPYNIGRLA-Q------RMP-LLRP--CTPKGIMTLLASTGADLYGMDAVVVGASNIVGRPMALE 180 (286)
T ss_dssp SCGGGCTTCC-----SHHHHHHHH-T------TCC-SSCC--HHHHHHHHHHHHTTCCCTTCEEEEECTTSTTHHHHHHH
T ss_pred CCcccccccC-----ChhhhHHHh-c------CCC-CCCC--CCHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHH
Confidence 21 1112333 333323332 2 322 2343 48899998887663 46889888863 3356668889
Q ss_pred HHhCCCeeeEeeeeeeecCCCChHHHHHHcCCCCEEEEECC
Q 026235 197 LSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASP 237 (241)
Q Consensus 197 L~~~G~~V~~~~vY~~~~~~~~~~~~~~~l~~id~IvFtSp 237 (241)
|...|++|.-+.-+. . .+.+.+.+.|+|+-+.+
T Consensus 181 L~~~gAtVtv~hs~T----~----~L~~~~~~ADIVI~Avg 213 (286)
T 4a5o_A 181 LLLGGCTVTVTHRFT----R----DLADHVSRADLVVVAAG 213 (286)
T ss_dssp HHHTTCEEEEECTTC----S----CHHHHHHTCSEEEECCC
T ss_pred HHHCCCeEEEEeCCC----c----CHHHHhccCCEEEECCC
Confidence 999999987664221 1 23333457888876654
No 261
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=52.46 E-value=12 Score=29.35 Aligned_cols=58 Identities=12% Similarity=0.084 Sum_probs=29.5
Q ss_pred EEEEEccCCC----chhHHHHHHh---CCCeeeEeeeeeeecCC----------CChHHHHHHcCCCCEEEEECCc
Q 026235 180 TVLYPASAKA----SNEIEEGLSN---RGFEVVRLNTYTTEPVH----------HVDQTVLKQALSIPVVAVASPS 238 (241)
Q Consensus 180 ~iL~~~g~~~----~~~L~~~L~~---~G~~V~~~~vY~~~~~~----------~~~~~~~~~l~~id~IvFtSps 238 (241)
++|++.|... ...+.+.+.+ .|++|..+.+++ .+.- +...++.+.+...|+|+|.||.
T Consensus 8 kilii~gS~r~~g~t~~la~~i~~~l~~g~~v~~~dl~~-~p~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~~sP~ 82 (193)
T 1rtt_A 8 KVLGISGSLRSGSYNSAALQEAIGLVPPGMSIELADISG-IPLYNEDVYALGFPPAVERFREQIRAADALLFATPE 82 (193)
T ss_dssp EEEEEESCCSTTCHHHHHHHHHHTTCCTTCEEEECCCTT-CCCCCHHHHTTCCCHHHHHHHHHHHHCSEEEEECCE
T ss_pred eEEEEECCCCCCChHHHHHHHHHHhccCCCeEEEEeHHH-CCCCCccccccCCCHHHHHHHHHHHhCCEEEEEccc
Confidence 5666666532 1234443322 255666666665 2111 0112334445678999998884
No 262
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=52.43 E-value=26 Score=31.90 Aligned_cols=155 Identities=12% Similarity=0.091 Sum_probs=85.7
Q ss_pred CCeEEEe-CC---CCChHHHHHHHHHCCCcEEEeceEE-------------EeeCCCchHHHHHHhcCCCccEEEEeCHH
Q 026235 50 NPKVVVT-RE---RGKNGKLIKALAKHRIDCLELPLIQ-------------HAQGPDTDRLSSVLNADTIFDWIIITSPE 112 (241)
Q Consensus 50 g~~VLit-R~---~~~~~~l~~~L~~~G~~v~~~P~~~-------------~~~~~~~~~l~~~l~~l~~~d~IiFTS~~ 112 (241)
..+|-|. .. .....++.+.|++.|+++..+|-+. ..+.-+ ..+.+ +..++..+.-+..++.
T Consensus 169 ~~~VNii~G~~~~~~D~~eik~lL~~~Gi~v~~~~d~s~~ld~~~~~~~~~~~~~gg-~~~~e-i~~~~~A~~ni~~~~~ 246 (458)
T 3pdi_B 169 PRQVNVLCSANLTPGDLEYIAESIESFGLRPLLIPDLSGSLDGHLDENRFNALTTGG-LSVAE-LATAGQSVATLVVGQS 246 (458)
T ss_dssp SSEEEEEECTTCCHHHHHHHHHHHHTTTCEEEEESCHHHHSSSCCCSSCCTTCCSCS-BCHHH-HGGGSSCSCEEEESGG
T ss_pred CCeEEEEeCCCCChHHHHHHHHHHHHcCCEEEEecCccccccCccccccccccCCCC-CCHHH-HHhhhhCcEEEEecHH
Confidence 3455554 43 2235789999999999999886431 000111 11222 3455666666677887
Q ss_pred HHHHHHHHHHh-cCCCCcEE-EEeC-HHHHHHHHHhhhccCCCCceeecCCCCC--HHHHHHHhhhC--CCCccEEEEEc
Q 026235 113 AGSVFLEAWKE-AGTPNVRI-GVVG-AGTASIFEEVIQSSKCSLDVAFSPSKAT--GKILASELPKN--GKKKCTVLYPA 185 (241)
Q Consensus 113 aV~~f~~~l~~-~~~~~~~i-~aIG-~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t--~e~L~~~l~~~--~~~~~~iL~~~ 185 (241)
. ....+.+++ .+.+-+.+ .-+| ..|.+.|++. ..++|..+ |+... -..+++.+... ...|+|+++..
T Consensus 247 ~-~~~A~~Le~~~GiP~~~~~~p~G~~~T~~~l~~l--a~~~g~~~---~~~i~~er~r~~~~~~d~~~~l~Gkrv~i~~ 320 (458)
T 3pdi_B 247 L-AGAADALAERTGVPDRRFGMLYGLDAVDAWLMAL--AEISGNPV---PDRYKRQRAQLQDAMLDTHFMLSSARTAIAA 320 (458)
T ss_dssp G-HHHHHHHHHHSCCCEEEECCSCHHHHHHHHHHHH--HHHHSSCC---CHHHHHHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred H-HHHHHHHHHHHCCCEEecCCCcCHHHHHHHHHHH--HHHHCCch---HHHHHHHHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 6 455666655 34332222 1244 4577777765 12236532 11000 11234444321 12578998874
Q ss_pred cCCCchhHHHHHHhCCCeeeEeeeeee
Q 026235 186 SAKASNEIEEGLSNRGFEVVRLNTYTT 212 (241)
Q Consensus 186 g~~~~~~L~~~L~~~G~~V~~~~vY~~ 212 (241)
+..-.--|...|.+.|.++..+.++..
T Consensus 321 ~~~~~~~l~~~L~elGm~vv~~~~~~~ 347 (458)
T 3pdi_B 321 DPDLLLGFDALLRSMGAHTVAAVVPAR 347 (458)
T ss_dssp CHHHHHHHHHHHHTTTCEEEEEEESSC
T ss_pred CcHHHHHHHHHHHHCCCEEEEEEECCC
Confidence 432223488999999999998888764
No 263
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=52.41 E-value=13 Score=28.57 Aligned_cols=36 Identities=8% Similarity=0.032 Sum_probs=23.4
Q ss_pred CCCccEEEEeCHHH--------HHHHHHHHHh---cCCCCcEEEEeC
Q 026235 100 DTIFDWIIITSPEA--------GSVFLEAWKE---AGTPNVRIGVVG 135 (241)
Q Consensus 100 l~~~d~IiFTS~~a--------V~~f~~~l~~---~~~~~~~i~aIG 135 (241)
+..+|.|||-++.- ++.|++.+.. ..+.+.++++.|
T Consensus 54 l~~~d~ii~g~pt~g~G~~p~~~~~f~~~l~~~~~~~l~~k~~avfg 100 (167)
T 1ykg_A 54 IASEKLLIVVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFS 100 (167)
T ss_dssp GGGCSEEEEEEECBGGGBCCGGGHHHHHHHTSTTCCCCTTCEEEEEE
T ss_pred hccCCeEEEEEcccCCCcCChhHHHHHHHHHhccccccCCCEEEEEe
Confidence 45688888866532 6778887754 234567777765
No 264
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=52.31 E-value=22 Score=27.70 Aligned_cols=49 Identities=14% Similarity=0.122 Sum_probs=33.1
Q ss_pred hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHh---cCCCccEEEEeCHHHH
Q 026235 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN---ADTIFDWIIITSPEAG 114 (241)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~---~l~~~d~IiFTS~~aV 114 (241)
...+.+.|++.|+++....++ + ++.+.+.+.+. ....+|.||.|-.-++
T Consensus 42 g~~L~~~L~~~G~~v~~~~iV---~-Dd~~~i~~al~~~~a~~~~DlVittGG~g~ 93 (178)
T 3iwt_A 42 GDIIKQLLIENGHKIIGYSLV---P-DDKIKILKAFTDALSIDEVDVIISTGGTGY 93 (178)
T ss_dssp HHHHHHHHHHTTCEEEEEEEE---C-SCHHHHHHHHHHHHTCTTCCEEEEESCCSS
T ss_pred HHHHHHHHHHCCCEEEEEEEe---C-CCHHHHHHHHHHHHhcCCCCEEEecCCccc
Confidence 356899999999998765433 2 44455655553 2467899998876553
No 265
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=51.74 E-value=73 Score=27.38 Aligned_cols=12 Identities=8% Similarity=-0.067 Sum_probs=6.8
Q ss_pred CCeEEEeCCCCC
Q 026235 50 NPKVVVTRERGK 61 (241)
Q Consensus 50 g~~VLitR~~~~ 61 (241)
...||++.+..+
T Consensus 180 ~~~ilv~gGs~g 191 (365)
T 3s2u_A 180 RVNLLVLGGSLG 191 (365)
T ss_dssp CCEEEECCTTTT
T ss_pred CcEEEEECCcCC
Confidence 455777755443
No 266
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=51.71 E-value=22 Score=28.89 Aligned_cols=88 Identities=13% Similarity=0.074 Sum_probs=54.4
Q ss_pred CeEEEeCCCCC-------hHHHHHHHHHCCCcEEEeceEEEeeCCC--chHHHHHHhcCCCccEEEEeCHHHHHHHHHHH
Q 026235 51 PKVVVTRERGK-------NGKLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLNADTIFDWIIITSPEAGSVFLEAW 121 (241)
Q Consensus 51 ~~VLitR~~~~-------~~~l~~~L~~~G~~v~~~P~~~~~~~~~--~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l 121 (241)
++|++..+... ..-+.+.|+++|..+....++......+ .+.+.+.+.....+|+|+.++-.....+.+.+
T Consensus 132 ~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al 211 (292)
T 3k4h_A 132 KQIAFIGGGSDLLVTRDRLAGMSDALKLADIVLPKEYILHFDFSRESGQQAVEELMGLQQPPTAIMATDDLIGLGVLSAL 211 (292)
T ss_dssp CCEEEEESCTTBHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHTSSSCCSEEEESSHHHHHHHHHHH
T ss_pred ceEEEEeCcccchhHHHHHHHHHHHHHHcCCCCChheEEecCCCHHHHHHHHHHHHcCCCCCcEEEEcChHHHHHHHHHH
Confidence 45666544322 2345667888887654333332211111 13355666544688999999888888888888
Q ss_pred HhcCC---CCcEEEEeCHHH
Q 026235 122 KEAGT---PNVRIGVVGAGT 138 (241)
Q Consensus 122 ~~~~~---~~~~i~aIG~~T 138 (241)
.+.++ .++.+++.+...
T Consensus 212 ~~~g~~vP~di~vig~d~~~ 231 (292)
T 3k4h_A 212 SKKGFVVPKDVSIVSFNNAL 231 (292)
T ss_dssp HHTTCCTTTTCEEEEESCCH
T ss_pred HHhCCCCCCeEEEEEecCcc
Confidence 88876 478888887643
No 267
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=51.69 E-value=33 Score=29.30 Aligned_cols=123 Identities=13% Similarity=0.024 Sum_probs=66.2
Q ss_pred CCccEEEEeCHH-HHHHHHHHHHhcCCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCC-CCCHHHHHHHhhhCCCCc
Q 026235 101 TIFDWIIITSPE-AGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKK 178 (241)
Q Consensus 101 ~~~d~IiFTS~~-aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~-~~t~e~L~~~l~~~~~~~ 178 (241)
..+|.||....+ ........+.+. +++++.++..+. .... ..-..+.+. ......+++.+.+.. .
T Consensus 74 ~~v~~iig~~~s~~~~~~~~~~~~~---~iP~v~~~~~~~--~~~~------~~~~~v~~~~~~~~~~~~~~l~~~g--~ 140 (385)
T 1pea_A 74 RGVRFLVGCYMSHTRKAVMPVVERA---DALLCYPTPYEG--FEYS------PNIVYGGPAPNQNSAPLAAYLIRHY--G 140 (385)
T ss_dssp TCCCEEEECCSHHHHHHHHHHHHHT---TCEEEECSCCCC--CCCC------TTEEECSCCGGGTHHHHHHHHHTTT--C
T ss_pred CCcEEEECCCchHHHHHHHHHHHhc---CceEEECCcccC--ccCC------CCEEEecCChHHhHHHHHHHHHHcc--C
Confidence 679999986443 344555555543 477777764210 0001 111112232 335677788777664 4
Q ss_pred cEEEEEccCCC-----chhHHHHHHhCCCeeeEeeeeeeecCCCChHHHHHHc--CCCCEEEEEC
Q 026235 179 CTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVAS 236 (241)
Q Consensus 179 ~~iL~~~g~~~-----~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~l--~~id~IvFtS 236 (241)
++|.++.++.. ...+.+.|++.|+++.....|.............+.+ .++|+|++.+
T Consensus 141 ~~ia~i~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~d~~~~~~~l~~~~pdaI~~~~ 205 (385)
T 1pea_A 141 ERVVFIGSDYIYPRESNHVMRHLYRQHGGTVLEEIYIPLYPSDDDLQRAVERIYQARADVVFSTV 205 (385)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECSSCCHHHHHHHHHHHHHHTCSEEEEEC
T ss_pred cEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCcchHHHHHHHHHHCCCCEEEEec
Confidence 78888876431 1346788899998876543332110111111222222 4789998876
No 268
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=51.61 E-value=44 Score=28.32 Aligned_cols=119 Identities=13% Similarity=0.128 Sum_probs=63.5
Q ss_pred HHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHHH
Q 026235 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (241)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~ 141 (241)
.+.+.++++|+++..... ..+.+...+.++. -..+|.||+.+...-....+.+.+ .+++++++|.....
T Consensus 87 gi~~~a~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l~~---~~iPvV~i~~~~~~- 157 (348)
T 3bil_A 87 EIQSTASKAGLATIITNS-----NEDATTMSGSLEFLTSHGVDGIICVPNEECANQLEDLQK---QGMPVVLVDRELPG- 157 (348)
T ss_dssp HHHHHHHHTTCCEEEEEC-----TTCHHHHHHHHHHHHHTTCSCEEECCCGGGHHHHHHHHH---C-CCEEEESSCCSC-
T ss_pred HHHHHHHHcCCEEEEEeC-----CCCHHHHHHHHHHHHhCCCCEEEEeCCCCChHHHHHHHh---CCCCEEEEcccCCC-
Confidence 345567788998765321 1222221222221 267999998765433333444443 35788888853211
Q ss_pred HHHhhhccCCCCceeecCCCC-CHHHHHHHhhhCCCCccEEEEEccCCCc-------hhHHHHHHhCCC
Q 026235 142 FEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGF 202 (241)
Q Consensus 142 L~~~~~~~~~Gi~~~~~p~~~-t~e~L~~~l~~~~~~~~~iL~~~g~~~~-------~~L~~~L~~~G~ 202 (241)
.. ++.. +..+.+ ....+++.|.+.. .++|.++.|.... .-+.+.|++.|.
T Consensus 158 --~~------~~~~-V~~D~~~~~~~a~~~L~~~G--~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~ 215 (348)
T 3bil_A 158 --DS------TIPT-ATSNPQPGIAAAVELLAHNN--ALPIGYLSGPMDTSTGRERLEDFKAACANSKI 215 (348)
T ss_dssp --C-------CCCE-EEEECHHHHHHHHHHHHHTT--CCSEEEECCCTTSHHHHHHHHHHHHHHHHTTC
T ss_pred --CC------CCCE-EEeChHHHHHHHHHHHHHCC--CCeEEEEeCCCCCccHHHHHHHHHHHHHHcCc
Confidence 02 3322 223332 2455666776653 4689999876432 235677888886
No 269
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=51.41 E-value=34 Score=28.95 Aligned_cols=78 Identities=14% Similarity=0.177 Sum_probs=46.5
Q ss_pred CCCCCeEEEeCCCC-ChHHHHHHHHHCCCcEEEece-------------------EEEeeC--CCchHHHHHHhcCCCcc
Q 026235 47 SNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPL-------------------IQHAQG--PDTDRLSSVLNADTIFD 104 (241)
Q Consensus 47 ~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~-------------------~~~~~~--~~~~~l~~~l~~l~~~d 104 (241)
++.+++||||.... -+..+.+.|.+.|.+|..+-- .++... .+.+.+.++++. ..+|
T Consensus 7 ~M~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~-~~~d 85 (346)
T 3i6i_A 7 PSPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKE-HEID 85 (346)
T ss_dssp ----CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHH-TTCC
T ss_pred CCCCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhh-CCCC
Confidence 35568999998865 467788888888988765411 111121 233455665532 2789
Q ss_pred EEEEeCHH----HHHHHHHHHHhcC
Q 026235 105 WIIITSPE----AGSVFLEAWKEAG 125 (241)
Q Consensus 105 ~IiFTS~~----aV~~f~~~l~~~~ 125 (241)
.||.+.+. +...+++.+.+.+
T Consensus 86 ~Vi~~a~~~n~~~~~~l~~aa~~~g 110 (346)
T 3i6i_A 86 IVVSTVGGESILDQIALVKAMKAVG 110 (346)
T ss_dssp EEEECCCGGGGGGHHHHHHHHHHHC
T ss_pred EEEECCchhhHHHHHHHHHHHHHcC
Confidence 98887654 4566666666554
No 270
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=51.24 E-value=87 Score=26.22 Aligned_cols=92 Identities=13% Similarity=0.068 Sum_probs=57.4
Q ss_pred CeEEEeCCCCC-------hHHHHHHHHHCCCcEEEeceEEEeeCCCc----hHHHHHHhcCCCccEEEEeCHHHHHHHHH
Q 026235 51 PKVVVTRERGK-------NGKLIKALAKHRIDCLELPLIQHAQGPDT----DRLSSVLNADTIFDWIIITSPEAGSVFLE 119 (241)
Q Consensus 51 ~~VLitR~~~~-------~~~l~~~L~~~G~~v~~~P~~~~~~~~~~----~~l~~~l~~l~~~d~IiFTS~~aV~~f~~ 119 (241)
++|++..+... ..-+.+.|+++|. +.....+. ...+. ..+.+.|....++|+|+..+-.......+
T Consensus 146 ~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~L~~~~~~~aI~~~~d~~a~g~~~ 222 (350)
T 3h75_A 146 IELLAFSGLKVTPAAQLRERGLRRALAEHPQ-VHLRQLVY--GEWNRERAYRQAQQLLKRYPKTQLVWSANDEMALGAMQ 222 (350)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHHCTT-EEEEEEEE--CTTCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHH
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHHCCC-eEEEEEee--CCCcHHHHHHHHHHHHHhCCCcCEEEECChHHHHHHHH
Confidence 46776654322 2346677888886 32222221 11121 23556665557899999999888888888
Q ss_pred HHHhcCCC---CcEEEEeCHHHHH--HHHHh
Q 026235 120 AWKEAGTP---NVRIGVVGAGTAS--IFEEV 145 (241)
Q Consensus 120 ~l~~~~~~---~~~i~aIG~~Ta~--~L~~~ 145 (241)
.+.+.++. ++.++.++..... .+..-
T Consensus 223 al~~~G~~vP~di~vvg~d~~~~~l~~~~~~ 253 (350)
T 3h75_A 223 AARELGRKPGTDLLFSGVNSSPEALQALIDG 253 (350)
T ss_dssp HHHHTTCCBTTTBEEEEESCCHHHHHHHHHT
T ss_pred HHHHcCCCCCCCeEEEecCCCHHHHHHHHcC
Confidence 89888864 7889998854433 55554
No 271
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=50.10 E-value=33 Score=27.99 Aligned_cols=94 Identities=10% Similarity=0.102 Sum_probs=58.2
Q ss_pred CCeEEEeCCCCC-------hHHHHHHHHHCCCcEEEeceEEEeeCCCc----hHHHHHHhcCCCccEEEEeCHHHHHHHH
Q 026235 50 NPKVVVTRERGK-------NGKLIKALAKHRIDCLELPLIQHAQGPDT----DRLSSVLNADTIFDWIIITSPEAGSVFL 118 (241)
Q Consensus 50 g~~VLitR~~~~-------~~~l~~~L~~~G~~v~~~P~~~~~~~~~~----~~l~~~l~~l~~~d~IiFTS~~aV~~f~ 118 (241)
.++|.+..+... ..-+.+.|+++|..+.....+... .+. +.+.+.+.....+|+|+..+-.....+.
T Consensus 127 ~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~ 204 (288)
T 3gv0_A 127 RKRIAVIVPPSRFSFHDHARKGFNRGIRDFGLTEFPIDAVTIE--TPLEKIRDFGQRLMQSSDRPDGIVSISGSSTIALV 204 (288)
T ss_dssp CCEEEEECCCTTSHHHHHHHHHHHHHHHHTTCEECCCCSCCTT--SCHHHHHHHHHHHTTSSSCCSEEEESCHHHHHHHH
T ss_pred CCeEEEEcCCcccchHHHHHHHHHHHHHHcCCCcchhheeccc--cchHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHH
Confidence 467777755432 233566788888766533222111 121 3355555444578999999988888888
Q ss_pred HHHHhcCC---CCcEEEEeCHHHHHHHHHh
Q 026235 119 EAWKEAGT---PNVRIGVVGAGTASIFEEV 145 (241)
Q Consensus 119 ~~l~~~~~---~~~~i~aIG~~Ta~~L~~~ 145 (241)
+.+.+.++ +++.++..+.........-
T Consensus 205 ~al~~~g~~vP~di~vig~d~~~~~~~~~p 234 (288)
T 3gv0_A 205 AGFEAAGVKIGEDVDIVSKQSAEFLNWIKP 234 (288)
T ss_dssp HHHHTTTCCTTTSCEEEEEESSTTHHHHCT
T ss_pred HHHHHcCCCCCCceEEEEecChHHHhccCC
Confidence 88888876 4788888876543333333
No 272
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}
Probab=49.99 E-value=92 Score=24.58 Aligned_cols=81 Identities=15% Similarity=0.110 Sum_probs=44.3
Q ss_pred cccCCCCCCCeEEEeCCCC-ChHHHHHHHHHCC-CcEEEec------------eEEEeeC--CCchHHHHHHhcCCCccE
Q 026235 42 TSASASNSNPKVVVTRERG-KNGKLIKALAKHR-IDCLELP------------LIQHAQG--PDTDRLSSVLNADTIFDW 105 (241)
Q Consensus 42 ~~~~~~l~g~~VLitR~~~-~~~~l~~~L~~~G-~~v~~~P------------~~~~~~~--~~~~~l~~~l~~l~~~d~ 105 (241)
+....+...|+||||.... -...+.+.|.+.| ++|..+- -.+.... .+.+.+.+.+ ...|.
T Consensus 15 ~~~~~~~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~---~~~D~ 91 (236)
T 3qvo_A 15 ENLYFQGHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQAM---QGQDI 91 (236)
T ss_dssp -------CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCTTEEEEECCTTCHHHHHHHH---TTCSE
T ss_pred cceeecCcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccccCCcEEEEecCCCHHHHHHHh---cCCCE
Confidence 3444556678999998764 4678889998999 6665431 1111111 2334555555 46788
Q ss_pred EEEeCH-----HHHHHHHHHHHhcC
Q 026235 106 IIITSP-----EAGSVFLEAWKEAG 125 (241)
Q Consensus 106 IiFTS~-----~aV~~f~~~l~~~~ 125 (241)
||..-. ..++.+++.+.+.+
T Consensus 92 vv~~a~~~~~~~~~~~~~~~~~~~~ 116 (236)
T 3qvo_A 92 VYANLTGEDLDIQANSVIAAMKACD 116 (236)
T ss_dssp EEEECCSTTHHHHHHHHHHHHHHTT
T ss_pred EEEcCCCCchhHHHHHHHHHHHHcC
Confidence 886543 23455555555543
No 273
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=49.98 E-value=38 Score=26.13 Aligned_cols=59 Identities=17% Similarity=0.198 Sum_probs=31.8
Q ss_pred EEEEEccCCCc------hhHHHHHHhCCCeeeEeeeeeeecCCC----------ChHHHHHHcCCCCEEEEECCc
Q 026235 180 TVLYPASAKAS------NEIEEGLSNRGFEVVRLNTYTTEPVHH----------VDQTVLKQALSIPVVAVASPS 238 (241)
Q Consensus 180 ~iL~~~g~~~~------~~L~~~L~~~G~~V~~~~vY~~~~~~~----------~~~~~~~~l~~id~IvFtSps 238 (241)
+++++.+.... +.+.+.|++.|++|..+.+++...+.. .+....+.+...|+|+|-||.
T Consensus 7 kilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~ 81 (200)
T 2a5l_A 7 YILVLYYSRHGATAEMARQIARGVEQGGFEARVRTVPAVSTECEAVAPDIPAEGALYATLEDLKNCAGLALGSPT 81 (200)
T ss_dssp EEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEBCCCEEC-------------CCBCCHHHHHTCSEEEEEEEC
T ss_pred eEEEEEeCCCChHHHHHHHHHHHHhhCCCEEEEEEhhhccchhhhhccccccccCchhhHHHHHHCCEEEEEcCh
Confidence 45555554322 245566777777777777766421110 000012234578999998884
No 274
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}
Probab=49.97 E-value=19 Score=29.87 Aligned_cols=93 Identities=12% Similarity=-0.022 Sum_probs=47.4
Q ss_pred hcCCCCCCcccceeccccccccCCCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCC
Q 026235 23 RLNRPLPFQFSRIQASSDATSASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT 101 (241)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~ 101 (241)
|+|-|.|-++....- .....++.||++|||..... ...+++.|.+.|++|...- +. ....+.+.+.+...+
T Consensus 9 ~~~~~~~~~g~~~m~----~~~~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~--r~--~~~~~~~~~~~~~~~ 80 (276)
T 3r1i_A 9 MGTLEAQTQGPGSMS----VLDLFDLSGKRALITGASTGIGKKVALAYAEAGAQVAVAA--RH--SDALQVVADEIAGVG 80 (276)
T ss_dssp --------------C----GGGGGCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE--SS--GGGGHHHHHHHHHTT
T ss_pred ccceeccccCCCCcc----cccccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEe--CC--HHHHHHHHHHHHhcC
Confidence 455555555543322 22345788999999988754 6788999999999876431 11 111233333333222
Q ss_pred -CccEEE--EeCHHHHHHHHHHHHh
Q 026235 102 -IFDWII--ITSPEAGSVFLEAWKE 123 (241)
Q Consensus 102 -~~d~Ii--FTS~~aV~~f~~~l~~ 123 (241)
...++. +++..+++.+++.+.+
T Consensus 81 ~~~~~~~~Dl~d~~~v~~~~~~~~~ 105 (276)
T 3r1i_A 81 GKALPIRCDVTQPDQVRGMLDQMTG 105 (276)
T ss_dssp CCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 222222 4788888888876654
No 275
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=49.82 E-value=25 Score=30.10 Aligned_cols=125 Identities=9% Similarity=0.029 Sum_probs=68.8
Q ss_pred CCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCC-CCCHHHHHHHhhhCCCCcc
Q 026235 101 TIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKKC 179 (241)
Q Consensus 101 ~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~-~~t~e~L~~~l~~~~~~~~ 179 (241)
.++|.||-.+..........+.+.+ ++++..+. +....... ....-..+.+. ......+++.+.+.. ..+
T Consensus 74 ~~V~~iig~~s~~~~~~~~~~~~~~---iP~i~~~~-~~~~~~~~----~~~~~f~~~~~~~~~~~~~~~~l~~~~-g~~ 144 (392)
T 3lkb_A 74 FKIPVFLSYATGANLQLKPLIQELR---IPTIPASM-HIELIDPP----NNDYIFLPTTSYSEQVVALLEYIAREK-KGA 144 (392)
T ss_dssp TCCSCEEECCHHHHHHHHHHHHHHT---CCEEESCC-CGGGGSSS----SCTTBCEEECCHHHHHHHHHHHHHHHC-TTC
T ss_pred cCcEEEEeCCcHHHHHHHHHHHhCC---ceEEeccc-ChhhccCC----CCCceEecCCChHHHHHHHHHHHHHhC-CCC
Confidence 4789998877666666677666643 55655432 22211111 00111122332 233455676666542 247
Q ss_pred EEEEEccCC-----CchhHHHHHHhCCCeeeEeeeeeeecCCCChHHHHHHc--CCCCEEEEEC
Q 026235 180 TVLYPASAK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVAS 236 (241)
Q Consensus 180 ~iL~~~g~~-----~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~l--~~id~IvFtS 236 (241)
+|.++..+. ....+.+.|++.|.++.....|... ..+.... +..+ .++|+|++.+
T Consensus 145 ~iaii~~~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~-~~d~~~~-~~~l~~~~~dav~~~~ 206 (392)
T 3lkb_A 145 KVALVVHPSPFGRAPVEDARKAARELGLQIVDVQEVGSG-NLDNTAL-LKRFEQAGVEYVVHQN 206 (392)
T ss_dssp EEEEEECSSHHHHTTHHHHHHHHHHHTCEEEEEEECCTT-CCCCHHH-HHHHHHTTCCEEEEES
T ss_pred EEEEEEeCCchhhhHHHHHHHHHHHcCCeEEEEEeeCCC-CcCHHHH-HHHHHhcCCCEEEEec
Confidence 888886543 2245788999999988766655432 2222333 3333 6899988754
No 276
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=49.81 E-value=51 Score=27.24 Aligned_cols=117 Identities=11% Similarity=0.014 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcC--CCccEEEEeCHH--HHHHHHHHHHhcCCCCcEEEEeCHHH
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD--TIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGT 138 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l--~~~d~IiFTS~~--aV~~f~~~l~~~~~~~~~i~aIG~~T 138 (241)
.-+.+.++++|+++.... ...+.+...+.++.+ ..+|+||+.+.. ......+.+.+ .++++++++...
T Consensus 23 ~gi~~~a~~~g~~~~~~~-----~~~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~~~~~~~~~~~---~giPvV~~~~~~ 94 (330)
T 3uug_A 23 NNIVKQLQEAGYKTDLQY-----ADDDIPNQLSQIENMVTKGVKVLVIASIDGTTLSDVLKQAGE---QGIKVIAYDRLI 94 (330)
T ss_dssp HHHHHHHHHTTCEEEEEE-----CTTCHHHHHHHHHHHHHHTCSEEEECCSSGGGGHHHHHHHHH---TTCEEEEESSCC
T ss_pred HHHHHHHHHcCCEEEEee-----CCCCHHHHHHHHHHHHHcCCCEEEEEcCCchhHHHHHHHHHH---CCCCEEEECCCC
Q ss_pred HHHHHHhhhccCCCCceeecCC-CCCHHHHHHHhhh-------CCCCccEEEEEccCCCchhHHHHHH
Q 026235 139 ASIFEEVIQSSKCSLDVAFSPS-KATGKILASELPK-------NGKKKCTVLYPASAKASNEIEEGLS 198 (241)
Q Consensus 139 a~~L~~~~~~~~~Gi~~~~~p~-~~t~e~L~~~l~~-------~~~~~~~iL~~~g~~~~~~L~~~L~ 198 (241)
.. .. ++...+..+ ...+..+++.|.+ ... +++.++.|........+.++
T Consensus 95 ~~---~~------~~~~~V~~D~~~~g~~a~~~l~~~~~~~~~~G~--~~i~~i~g~~~~~~~~~R~~ 151 (330)
T 3uug_A 95 RN---SG------DVSYYATFDNFQVGVLQATSITDKLGLKDGKGP--FNIELFGGSPDDNNAFFFYD 151 (330)
T ss_dssp CS---CT------TCCEEEEECHHHHHHHHHHHHHHHHTGGGTCCC--EEEEECBCCTTCHHHHHHHH
T ss_pred CC---CC------ceeEEEEeCHHHHHHHHHHHHHHHhcccCCCCc--eEEEEEECCCCCchHHHHHH
No 277
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=49.64 E-value=9.2 Score=29.40 Aligned_cols=71 Identities=18% Similarity=0.316 Sum_probs=36.1
Q ss_pred CeEEEeCCC----CChHHHHHHHHHCCCcEEEeceEEEeeCC-------------CchHHHHHHhcCCCccEEEEeCH--
Q 026235 51 PKVVVTRER----GKNGKLIKALAKHRIDCLELPLIQHAQGP-------------DTDRLSSVLNADTIFDWIIITSP-- 111 (241)
Q Consensus 51 ~~VLitR~~----~~~~~l~~~L~~~G~~v~~~P~~~~~~~~-------------~~~~l~~~l~~l~~~d~IiFTS~-- 111 (241)
++||+.-.. .....+++.+.+ |+++..+.+.+....+ ..+.+....+.+..+|.|||.||
T Consensus 4 Mkilii~~S~r~~g~t~~la~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~~~P~y 82 (184)
T 1rli_A 4 MKIAVINGGTRSGGNTDVLAEKAVQ-GFDAEHIYLQKYPIQPIEDLRHAQGGFRPVQDDYDSIIERILQCHILIFATPIY 82 (184)
T ss_dssp -CEEEEESSCSSCCHHHHHHHHHHT-TTCCEEEEC-----------------------CHHHHHHHHHTCSEEEEEEECB
T ss_pred cEEEEEECCCCCCccHHHHHHHHHc-CCeEEEEEcCCCCCccCCccccccCCCCCCCCCHHHHHHHHHhCCEEEEEeCcc
Confidence 456654333 345667777654 5665555444432100 01123333445578899999985
Q ss_pred -----HHHHHHHHHHH
Q 026235 112 -----EAGSVFLEAWK 122 (241)
Q Consensus 112 -----~aV~~f~~~l~ 122 (241)
..++.|++.+.
T Consensus 83 ~~~~p~~lK~~iD~~~ 98 (184)
T 1rli_A 83 WFGMSGTLKLFIDRWS 98 (184)
T ss_dssp TTBCCHHHHHHHHTHH
T ss_pred ccCCcHHHHHHHHHhH
Confidence 56677776543
No 278
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=49.62 E-value=8.6 Score=30.85 Aligned_cols=52 Identities=12% Similarity=-0.036 Sum_probs=33.3
Q ss_pred HHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCH-------HHHHHHHHHH
Q 026235 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP-------EAGSVFLEAW 121 (241)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~-------~aV~~f~~~l 121 (241)
.+.+.+++.|.++..+-+.+ ..+.. +.++.+...|.|||.+| ...+.|++.+
T Consensus 38 ~~~~~~~~~g~~v~~~dL~~---~~d~~---~~~~~l~~AD~iV~~~P~y~~s~pa~LK~~iDrv 96 (204)
T 2amj_A 38 VADGTLRDLGHDVRIVRADS---DYDVK---AEVQNFLWADVVIWQMPGWWMGAPWTVKKYIDDV 96 (204)
T ss_dssp HHHHHHHHTTCEEEEEESSS---CCCHH---HHHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCEEEEEeCCc---cccHH---HHHHHHHhCCEEEEECCccccCCCHHHHHHHHHH
Confidence 34445666688888877764 12333 33344567899999985 5667777754
No 279
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=49.52 E-value=22 Score=28.51 Aligned_cols=59 Identities=20% Similarity=0.167 Sum_probs=37.8
Q ss_pred EEEEEccCCC--c--------hhHHHHHHhC--CCeeeEeeeeeeecCCCCh--------------------------HH
Q 026235 180 TVLYPASAKA--S--------NEIEEGLSNR--GFEVVRLNTYTTEPVHHVD--------------------------QT 221 (241)
Q Consensus 180 ~iL~~~g~~~--~--------~~L~~~L~~~--G~~V~~~~vY~~~~~~~~~--------------------------~~ 221 (241)
+||++.|.-. . +.+.+.|++. |.+|..+.+|+...+.... .+
T Consensus 6 kiLiI~gSpr~~~~S~s~~l~~~~~~~~~~~~~g~ev~~~dL~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (211)
T 3p0r_A 6 KVLFVKANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVELDLYKEELPYVGVDMINGTFKAGKGFDLTEEEAKAVAVADK 85 (211)
T ss_dssp EEEEEECCCSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEEGGGSCCCCCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred EEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcCCHHHHHhhhccCccccCCHHHHhhHHHHHH
Confidence 6777777644 1 2456677666 8999999999754322111 11
Q ss_pred HHHHcCCCCEEEEECCc
Q 026235 222 VLKQALSIPVVAVASPS 238 (241)
Q Consensus 222 ~~~~l~~id~IvFtSps 238 (241)
+.+.+...|+|||.||.
T Consensus 86 ~~~~~~~aD~iv~~~P~ 102 (211)
T 3p0r_A 86 YLNQFLEADKVVFGFPL 102 (211)
T ss_dssp HHHHHHHCSEEEEEEEC
T ss_pred HHHHHHhCCEEEEEcCh
Confidence 22334689999999984
No 280
>3glv_A Lipopolysaccharide core biosynthesis protein; structural GEN PSI, MCSG, protein structure initiative; HET: AMP; 1.99A {Thermoplasma volcanium GSS1}
Probab=49.43 E-value=68 Score=23.83 Aligned_cols=87 Identities=11% Similarity=0.077 Sum_probs=47.4
Q ss_pred hHHHHHHHHHCCCcEEEeceEE-------EeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEe
Q 026235 62 NGKLIKALAKHRIDCLELPLIQ-------HAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVV 134 (241)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~-------~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aI 134 (241)
...+.+...+.+-++....... ..++.+.++-.+.+..++.+|.++..|+.. |.+.+.+. +.+++++
T Consensus 18 H~~li~~a~~~~~~~~v~v~~~~~~~~~~~~~l~~~~eR~~~l~~~~~vd~v~~~~~~~---f~~~~~~l---~~~~iv~ 91 (143)
T 3glv_A 18 HIHYLKESKKLGDELVVVVARDSTARNNGKIPIFDENSRLALISELKVVDRAILGHEGD---MMKTVIEV---KPDIITL 91 (143)
T ss_dssp HHHHHHHHHTTSSEEEEEECCHHHHHHTTCCCSSCHHHHHHHHTTBTTCSEEEECCTTC---HHHHHHHH---CCSEEEE
T ss_pred HHHHHHHHHHhCCCcEEEEECCcchhhcCCCCCCCHHHHHHHHHhcCCCCEEEEcCchh---HHHHHHhc---CCCEEEE
Confidence 4555566666654433322221 112223344445565666799999988775 44545443 4678888
Q ss_pred CHHH-------HHHHHHhhhccCCCCceeecCC
Q 026235 135 GAGT-------ASIFEEVIQSSKCSLDVAFSPS 160 (241)
Q Consensus 135 G~~T-------a~~L~~~~~~~~~Gi~~~~~p~ 160 (241)
|.-. .+..++. |+.+.+++.
T Consensus 92 G~d~~f~~~~l~~~~~~~------g~~v~vv~~ 118 (143)
T 3glv_A 92 GYDQKFDEAELQSKINKL------GITVKIVRI 118 (143)
T ss_dssp CTTCHHHHHHHHHHHHHH------TCCCEEEEC
T ss_pred CCCCCCCHHHHHHHHHHc------CCeEEEEEe
Confidence 8542 2223445 877766553
No 281
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}
Probab=49.27 E-value=59 Score=26.40 Aligned_cols=35 Identities=17% Similarity=0.066 Sum_probs=25.5
Q ss_pred CCCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEe
Q 026235 45 SASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (241)
Q Consensus 45 ~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (241)
...+.||+||||..... ...+++.|.+.|++|...
T Consensus 16 ~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~ 51 (253)
T 2nm0_A 16 PRSHMSRSVLVTGGNRGIGLAIARAFADAGDKVAIT 51 (253)
T ss_dssp ----CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred ccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEE
Confidence 34577899999988754 577899999999987653
No 282
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=49.17 E-value=84 Score=27.30 Aligned_cols=55 Identities=22% Similarity=0.168 Sum_probs=34.4
Q ss_pred cEEEEEccCCCc------hhHHHHHHhCCCeeeEeeeeeeecCCCChHHHHHHcCCCCEEEEECCc
Q 026235 179 CTVLYPASAKAS------NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPS 238 (241)
Q Consensus 179 ~~iL~~~g~~~~------~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~l~~id~IvFtSps 238 (241)
.+++++-+.... +.+.+.|.+.|+++..+.+.+. ....+.+.+.+.|+|+|-||.
T Consensus 257 ~kv~iiy~S~~GnT~~la~~i~~~l~~~g~~v~~~~l~~~-----~~~~~~~~l~~~D~iiigsP~ 317 (414)
T 2q9u_A 257 KKVTVVLDSMYGTTHRMALALLDGARSTGCETVLLEMTSS-----DITKVALHTYDSGAVAFASPT 317 (414)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEGGGC-----CHHHHHHHHHTCSEEEEECCC
T ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEEcCcC-----CHHHHHHHHHhCCEEEEEcCc
Confidence 477766665433 2466777778876655544322 123344455789999999985
No 283
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=49.15 E-value=58 Score=29.94 Aligned_cols=113 Identities=12% Similarity=0.110 Sum_probs=73.1
Q ss_pred CeEEEeCCCCChHHHHHHHHHCCCcEEEeceEE--------EeeC--CCchHHHHHHhcCCCccEEEEeCHHHHHHHHHH
Q 026235 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPLIQ--------HAQG--PDTDRLSSVLNADTIFDWIIITSPEAGSVFLEA 120 (241)
Q Consensus 51 ~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~--------~~~~--~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~ 120 (241)
++|+|.....-+..+++.|.+.|.++..+..=. .... .+.+.+++ . .+.++|.+|.+..+--.+.+-.
T Consensus 349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~i~gD~t~~~~L~~-a-gi~~ad~vi~~~~~d~~ni~~~ 426 (565)
T 4gx0_A 349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESPVCNDHVVVYGDATVGQTLRQ-A-GIDRASGIIVTTNDDSTNIFLT 426 (565)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSSCEEESCSSSSTHHHH-H-TTTSCSEEEECCSCHHHHHHHH
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHHHhhcCCEEEeCCCCHHHHHh-c-CccccCEEEEECCCchHHHHHH
Confidence 778888877778899999999998876553110 1111 12233433 3 5789999999888776665543
Q ss_pred H--HhcCCCCcEEEE--eCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhh
Q 026235 121 W--KEAGTPNVRIGV--VGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (241)
Q Consensus 121 l--~~~~~~~~~i~a--IG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~ 172 (241)
+ ++.+ .+.++++ -.+...+.+++. |....+.|+...++.+.+.+.
T Consensus 427 ~~ak~l~-~~~~iiar~~~~~~~~~l~~~------G~d~vi~p~~~~~~~i~~~~~ 475 (565)
T 4gx0_A 427 LACRHLH-SHIRIVARANGEENVDQLYAA------GADFVVSNASVGANILGNLLE 475 (565)
T ss_dssp HHHHHHC-SSSEEEEEESSTTSHHHHHHH------TCSEEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHC-CCCEEEEEECCHHHHHHHHHc------CCCEEEccchHHHHHHHHHhc
Confidence 3 2333 2334444 556667888888 998777777666666666654
No 284
>2xok_G ATP synthase subunit gamma, mitochondrial; hydrolase, ATP-binding, F(O), F(1), mitochondr inner membrane, transmembrane; HET: ANP; 3.01A {Saccharomyces cerevisiae}
Probab=48.95 E-value=25 Score=30.53 Aligned_cols=64 Identities=16% Similarity=0.170 Sum_probs=40.9
Q ss_pred CccEEEEeC---------HHHHHHHHHHHHhcCCCCcEEEEeCHHHHHHHHH-hhhccCCCCceee--c--CC-CCC---
Q 026235 102 IFDWIIITS---------PEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEE-VIQSSKCSLDVAF--S--PS-KAT--- 163 (241)
Q Consensus 102 ~~d~IiFTS---------~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~L~~-~~~~~~~Gi~~~~--~--p~-~~t--- 163 (241)
..-+|+||| .|-++...+.+.+ ..+..+++||.+..+.+++ . |..+.. . .+ .++
T Consensus 104 ~~~~IvitSDrGLCG~fNsni~k~~~~~i~~--~~g~~l~~VG~Kg~~~~~~~~------~~~i~~~~~~~~~~~p~~~~ 175 (311)
T 2xok_G 104 KELIVAITSDKGLCGSIHSQLAKAVRRHLND--QPNADIVTIGDKIKMQLLRTH------PNNIKLSINGIGKDAPTFQE 175 (311)
T ss_dssp CEEEEEECCSCCSSTTHHHHHHHHHHHSSSS--CTTCEEEEESHHHHHHHHTTS------TTTEEEEEESCTTSCCCHHH
T ss_pred ceEEEEEeCCCcccchhhHHHHHHHHHHHHh--cCCCEEEEechHHHHHHHHhc------CCCeEEEecccCCCCCCHHH
Confidence 345899999 7777776654433 1223399999999999987 6 765532 1 12 333
Q ss_pred HHHHHHHhhh
Q 026235 164 GKILASELPK 173 (241)
Q Consensus 164 ~e~L~~~l~~ 173 (241)
...+++.+.+
T Consensus 176 a~~i~~~i~~ 185 (311)
T 2xok_G 176 SALIADKLLS 185 (311)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3456666655
No 285
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=48.70 E-value=1.1e+02 Score=25.59 Aligned_cols=74 Identities=12% Similarity=0.076 Sum_probs=34.7
Q ss_pred CHHHHHHHhhhCCCCccEEEEEccCCCchhHHHHHHhCCCeeeEeeeeeeecCCCChHHHHHHc---CCCCEEEEECCc
Q 026235 163 TGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA---LSIPVVAVASPS 238 (241)
Q Consensus 163 t~e~L~~~l~~~~~~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~l---~~id~IvFtSps 238 (241)
..+++.-.+.....+|.+|+++...-........++..|+++..+.+-.. . ....+++.+.+ .+..+|+++++.
T Consensus 80 ~t~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~-~~d~~~l~~~l~~~~~~~~v~~~~~~ 156 (386)
T 2dr1_A 80 GTGIMEASIRNGVSKGGKVLVTIIGAFGKRYKEVVESNGRKAVVLEYEPG-K-AVKPEDLDDALRKNPDVEAVTITYNE 156 (386)
T ss_dssp HHHHHHHHHHHHSCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTT-C-CCCHHHHHHHHHHCTTCCEEEEESEE
T ss_pred hHHHHHHHHHHhhcCCCeEEEEcCCchhHHHHHHHHHhCCceEEEecCCC-C-CCCHHHHHHHHhcCCCCcEEEEEeec
Confidence 34444333333223456777765543322255556666776655554211 0 01123333333 356677777653
No 286
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=48.70 E-value=67 Score=27.19 Aligned_cols=74 Identities=8% Similarity=0.021 Sum_probs=34.0
Q ss_pred CHHHHHHHhhhCCCCccEEEEEccCCCchhHHHHHHhCCCeeeEeeeeeeecCCCChHHHHHHc-C-CCCEEEEECCc
Q 026235 163 TGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA-L-SIPVVAVASPS 238 (241)
Q Consensus 163 t~e~L~~~l~~~~~~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~l-~-~id~IvFtSps 238 (241)
..+++.-.+.....++.+|++....-....+...++..|+++..+.+-.. . ....+++.+.+ . +..+|+++++.
T Consensus 94 ~t~al~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~-~~d~~~l~~~l~~~~~~~v~~~~~~ 169 (393)
T 1vjo_A 94 GTAAMEATIANAVEPGDVVLIGVAGYFGNRLVDMAGRYGADVRTISKPWG-E-VFSLEELRTALETHRPAILALVHAE 169 (393)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTT-C-CCCHHHHHHHHHHHCCSEEEEESEE
T ss_pred hHHHHHHHHHhccCCCCEEEEEcCChhHHHHHHHHHHcCCceEEEecCCC-C-CCCHHHHHHHHhhCCceEEEEeccC
Confidence 33444333333223455677765533322355566666776655543211 0 01123333333 3 56677777653
No 287
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=48.67 E-value=53 Score=27.88 Aligned_cols=110 Identities=12% Similarity=0.095 Sum_probs=59.7
Q ss_pred CeEEEeCCCCChHHHHHHHHHCCCcEEEece-----------EEEeeCC--CchHHHHHHhcCCCccEEEEeCHHHHHHH
Q 026235 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPL-----------IQHAQGP--DTDRLSSVLNADTIFDWIIITSPEAGSVF 117 (241)
Q Consensus 51 ~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~-----------~~~~~~~--~~~~l~~~l~~l~~~d~IiFTS~~aV~~f 117 (241)
++|+|.....-...+.+.|.+.|. +..+.- +.....+ +.+.+.++ .+.+.|.++.+.++--.+.
T Consensus 116 ~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~~~~~~~~~~~~i~gd~~~~~~L~~a--~i~~a~~vi~~~~~d~~n~ 192 (336)
T 1lnq_A 116 RHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKA--NVRGARAVIVDLESDSETI 192 (336)
T ss_dssp CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGGHHHHHHTTCEEEESCTTSHHHHHHT--CSTTEEEEEECCSSHHHHH
T ss_pred CCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChhhhhHHhCCcEEEEeCCCCHHHHHhc--ChhhccEEEEcCCccHHHH
Confidence 467776655455566666666665 433210 1111111 22223222 4678999999887654444
Q ss_pred HHH--HHhcCCCCcEEEEe--CHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHH
Q 026235 118 LEA--WKEAGTPNVRIGVV--GAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASE 170 (241)
Q Consensus 118 ~~~--l~~~~~~~~~i~aI--G~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~ 170 (241)
.-. +++.+ ++.++++. .+...+.+++. |.+..+.|+...+..|++.
T Consensus 193 ~~~~~ar~~~-~~~~iiar~~~~~~~~~l~~~------G~d~vi~~~~~~~~~l~~~ 242 (336)
T 1lnq_A 193 HCILGIRKID-ESVRIIAEAERYENIEQLRMA------GADQVISPFVISGRLMSRS 242 (336)
T ss_dssp HHHHHHHTTC-TTSEEEEECSSGGGHHHHHHT------TCSEEECHHHHHHHHHHHT
T ss_pred HHHHHHHHHC-CCCeEEEEECCHHHHHHHHHc------CCCEEEChhHhHHHHHHHH
Confidence 332 22222 44566664 56667888888 9986666654444444443
No 288
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=48.65 E-value=9.3 Score=30.52 Aligned_cols=58 Identities=7% Similarity=0.067 Sum_probs=33.1
Q ss_pred HHHHHHHHC--CCcEEEeceEEEeeCC-Cch----------------------HHHHHHhcCCCccEEEEeCH-------
Q 026235 64 KLIKALAKH--RIDCLELPLIQHAQGP-DTD----------------------RLSSVLNADTIFDWIIITSP------- 111 (241)
Q Consensus 64 ~l~~~L~~~--G~~v~~~P~~~~~~~~-~~~----------------------~l~~~l~~l~~~d~IiFTS~------- 111 (241)
.+.+.+++. |.++..+-+++...+. +.. .+.+.++.+...|.|||.||
T Consensus 24 ~~~~~~~~~~~g~~v~~~dL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~iV~~~P~y~~~~p 103 (212)
T 3r6w_A 24 VFLAAYREAHPQARVARREVGRVPLPAVTEAFVAAAFHPQPEQRSLAMQADLALSDQLVGELFDSDLLVISTPMYNFSVP 103 (212)
T ss_dssp HHHHHHHHHCTTCCEEEEESSSSCCCCCCHHHHHHHTCSSGGGCCHHHHHHHHHHHHHHHHHHHCSEEEEEEECBTTBCC
T ss_pred HHHHHHHHhCCCCeEEEEECCCCCCCcCCHHHHHHhhcCCcccCCHHHHHHHHHHHHHHHHHHhCCEEEEEcCcccccCC
Confidence 345556665 8899888776542111 100 03333445567888888876
Q ss_pred HHHHHHHHHH
Q 026235 112 EAGSVFLEAW 121 (241)
Q Consensus 112 ~aV~~f~~~l 121 (241)
..++.|++.+
T Consensus 104 a~lK~~iD~~ 113 (212)
T 3r6w_A 104 SGLKAWIDQI 113 (212)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3556666654
No 289
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}
Probab=48.42 E-value=1.1e+02 Score=24.80 Aligned_cols=73 Identities=10% Similarity=0.044 Sum_probs=45.5
Q ss_pred CeEEEeCCCC-ChHHHHHHHHHC-CCcEEEec------------eEEEeeC--CCchHHHHHHhcCCCccEEEEeCH---
Q 026235 51 PKVVVTRERG-KNGKLIKALAKH-RIDCLELP------------LIQHAQG--PDTDRLSSVLNADTIFDWIIITSP--- 111 (241)
Q Consensus 51 ~~VLitR~~~-~~~~l~~~L~~~-G~~v~~~P------------~~~~~~~--~~~~~l~~~l~~l~~~d~IiFTS~--- 111 (241)
|+||||.... -+..+.+.|.+. |.+|..+- -++.... .+.+.+.+.+ ..+|.||...+
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~~~v~~~~~D~~d~~~l~~~~---~~~d~vi~~a~~~~ 77 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKVSVRQLDYFNQESMVEAF---KGMDTVVFIPSIIH 77 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGGBTTBEEEECCTTCHHHHHHHT---TTCSEEEECCCCCC
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhhhCCCEEEEcCCCCHHHHHHHH---hCCCEEEEeCCCCc
Confidence 5789998764 355677778777 88877651 1222222 2334455544 67899998865
Q ss_pred ------HHHHHHHHHHHhcCC
Q 026235 112 ------EAGSVFLEAWKEAGT 126 (241)
Q Consensus 112 ------~aV~~f~~~l~~~~~ 126 (241)
.+.+.+++.+.+.+.
T Consensus 78 ~~~~~~~~~~~l~~aa~~~gv 98 (289)
T 3e48_A 78 PSFKRIPEVENLVYAAKQSGV 98 (289)
T ss_dssp SHHHHHHHHHHHHHHHHHTTC
T ss_pred cchhhHHHHHHHHHHHHHcCC
Confidence 456677777766553
No 290
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=48.35 E-value=20 Score=29.19 Aligned_cols=82 Identities=13% Similarity=0.221 Sum_probs=51.3
Q ss_pred eEEEeCCCCC-------hHHHHHHHHHC-CCcEEEeceEEEeeCCCc----hHHHHHHhcCCCccEEEEeCHHHHHHHHH
Q 026235 52 KVVVTRERGK-------NGKLIKALAKH-RIDCLELPLIQHAQGPDT----DRLSSVLNADTIFDWIIITSPEAGSVFLE 119 (241)
Q Consensus 52 ~VLitR~~~~-------~~~l~~~L~~~-G~~v~~~P~~~~~~~~~~----~~l~~~l~~l~~~d~IiFTS~~aV~~f~~ 119 (241)
+|++..+... ..-+.+.|+++ |.++... + ....+. ..+.+.+....++|+|+.++-...-.+.+
T Consensus 137 ~i~~i~g~~~~~~~~~R~~gf~~~l~~~~g~~~~~~--~--~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~ 212 (293)
T 3l6u_A 137 RIVEITGTANVYTTNERHRGFLKGIENEPTLSIVDS--V--SGNYDPVTSERVMRQVIDSGIPFDAVYCHNDDIAMGVLE 212 (293)
T ss_dssp EEEEEECSTTCHHHHHHHHHHHHHHTTCTTEEEEEE--E--ECTTCHHHHHHHHHHHHHTTCCCSEEEESSHHHHHHHHH
T ss_pred eEEEEECCCCCchHHHHHHHHHHHHHhCCCcEEeee--c--cCCCCHHHHHHHHHHHHHhCCCCCEEEECCchHHHHHHH
Confidence 7776654322 23455667777 7665432 1 111121 23555565556889999999888888888
Q ss_pred HHHhcCCCCcEEEEeCHH
Q 026235 120 AWKEAGTPNVRIGVVGAG 137 (241)
Q Consensus 120 ~l~~~~~~~~~i~aIG~~ 137 (241)
.+.+.++.++.++..+..
T Consensus 213 al~~~g~~di~vig~d~~ 230 (293)
T 3l6u_A 213 ALKKAKISGKIVVGIDGN 230 (293)
T ss_dssp HHHHTTCCCCEEEEEECC
T ss_pred HHHhCCCCCeEEEEecCC
Confidence 888888777777777643
No 291
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=47.92 E-value=14 Score=29.58 Aligned_cols=84 Identities=11% Similarity=0.036 Sum_probs=48.6
Q ss_pred CCeEEEeCCC----CChHHHHHHHHH---CCCcEE-EeceEEEeeCCC--------chHHHHHHhcCCCccEEEEeCH--
Q 026235 50 NPKVVVTRER----GKNGKLIKALAK---HRIDCL-ELPLIQHAQGPD--------TDRLSSVLNADTIFDWIIITSP-- 111 (241)
Q Consensus 50 g~~VLitR~~----~~~~~l~~~L~~---~G~~v~-~~P~~~~~~~~~--------~~~l~~~l~~l~~~d~IiFTS~-- 111 (241)
.++||+.-+. ..+..+.+.+.+ .|+++. .+.+.++ |.-+ .+.+.+..+.+...|.|||.||
T Consensus 6 ~mkIl~I~GS~r~~s~t~~la~~~~~~~~~g~~v~~~idL~~l-P~~~~~~~~~~~~~~~~~~~~~i~~AD~iVi~tP~Y 84 (199)
T 4hs4_A 6 PLHFVTLLGSLRKASFNAAVARALPEIAPEGIAITPLGSIGTF-PHYSQDVQEEGFPAPVLTMAQQIATADAVVIVTPEY 84 (199)
T ss_dssp CEEEEEEECCCSTTCHHHHHHHHHHHHCCTTEEEEECCCGGGS-CCCCHHHHHHCCCHHHHHHHHHHHHSSEEEEEECCB
T ss_pred CCEEEEEEcCCCCCChHHHHHHHHHHHccCCCEEEEEEehhhc-CCCCccccccCCCHHHHHHHHHHHhCCEEEEEcCcc
Confidence 3567665433 234556665543 366676 4444332 1111 1234445555678999999987
Q ss_pred -----HHHHHHHHHHHhc---CCCCcEEEEe
Q 026235 112 -----EAGSVFLEAWKEA---GTPNVRIGVV 134 (241)
Q Consensus 112 -----~aV~~f~~~l~~~---~~~~~~i~aI 134 (241)
...+.|++.+... .+.+++++.+
T Consensus 85 ~~s~p~~LK~~iD~~~~~~~~~l~gK~v~~v 115 (199)
T 4hs4_A 85 NYSVPGVLKNAIDWLSRVSPQPLAGKPVALV 115 (199)
T ss_dssp TTBCCHHHHHHHHHHTTSSSCTTTTCEEEEE
T ss_pred CCCcCHHHHHHHHHhcccCCcccCCCEEEEE
Confidence 4688888887652 3456666554
No 292
>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*
Probab=47.64 E-value=72 Score=26.15 Aligned_cols=86 Identities=8% Similarity=-0.033 Sum_probs=51.4
Q ss_pred CCCCCCCeEEEeCCC---CChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEE--EeCHHHHHHHHH
Q 026235 45 SASNSNPKVVVTRER---GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII--ITSPEAGSVFLE 119 (241)
Q Consensus 45 ~~~l~g~~VLitR~~---~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~Ii--FTS~~aV~~f~~ 119 (241)
...+.||+||||... .-...+++.|.++|++|...-.- ...+.+.+.....+...++. +++..+++.+++
T Consensus 21 M~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~-----~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~ 95 (280)
T 3nrc_A 21 MGFLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVG-----QFKDRVEKLCAEFNPAAVLPCDVISDQEIKDLFV 95 (280)
T ss_dssp -CTTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECT-----TCHHHHHHHHGGGCCSEEEECCTTCHHHHHHHHH
T ss_pred ccccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCc-----hHHHHHHHHHHhcCCceEEEeecCCHHHHHHHHH
Confidence 456889999999854 24678999999999986643111 11223333322333333332 478999999988
Q ss_pred HHHhc-CCCCcEEEEeC
Q 026235 120 AWKEA-GTPNVRIGVVG 135 (241)
Q Consensus 120 ~l~~~-~~~~~~i~aIG 135 (241)
.+.+. +.-+.-|.+.|
T Consensus 96 ~~~~~~g~id~li~nAg 112 (280)
T 3nrc_A 96 ELGKVWDGLDAIVHSIA 112 (280)
T ss_dssp HHHHHCSSCCEEEECCC
T ss_pred HHHHHcCCCCEEEECCc
Confidence 77553 22345555544
No 293
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=47.62 E-value=26 Score=30.70 Aligned_cols=78 Identities=13% Similarity=0.073 Sum_probs=45.8
Q ss_pred CeEEEeCCCC--ChHH----HHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCH-------HHHHHH
Q 026235 51 PKVVVTRERG--KNGK----LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP-------EAGSVF 117 (241)
Q Consensus 51 ~~VLitR~~~--~~~~----l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~-------~aV~~f 117 (241)
++|++.-... .... +++.+.+.|+++..+.+-+. +...+ ...+.++|.|||-|| ..++.|
T Consensus 257 ~kv~iiy~S~~GnT~~la~~i~~~l~~~g~~v~~~~l~~~----~~~~~---~~~l~~~D~iiigsP~y~~~~~~~~k~f 329 (414)
T 2q9u_A 257 KKVTVVLDSMYGTTHRMALALLDGARSTGCETVLLEMTSS----DITKV---ALHTYDSGAVAFASPTLNNTMMPSVAAA 329 (414)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEGGGC----CHHHH---HHHHHTCSEEEEECCCBTTBCCHHHHHH
T ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEEcCcC----CHHHH---HHHHHhCCEEEEEcCccCcCchHHHHHH
Confidence 5666553332 2333 44455667877655443211 12222 223468999999986 478899
Q ss_pred HHHHHhcCC-CCcEEEEeC
Q 026235 118 LEAWKEAGT-PNVRIGVVG 135 (241)
Q Consensus 118 ~~~l~~~~~-~~~~i~aIG 135 (241)
++.+..... .+++++++|
T Consensus 330 ld~l~~~~~~~~K~~~~~~ 348 (414)
T 2q9u_A 330 LNYVRGLTLIKGKPAFAFG 348 (414)
T ss_dssp HHHHHHHTTTTTSBEEEEE
T ss_pred HHHHHhhcccCCCEEEEEE
Confidence 988765445 566766665
No 294
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=47.60 E-value=23 Score=28.23 Aligned_cols=50 Identities=10% Similarity=0.076 Sum_probs=34.5
Q ss_pred ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcC--CCccEEEEeCHHHH
Q 026235 61 KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD--TIFDWIIITSPEAG 114 (241)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l--~~~d~IiFTS~~aV 114 (241)
....+...|++.|+++...... + ++.+.+.+.+.+. ..+|.||.|-..++
T Consensus 50 n~~~L~~~L~~~G~~v~~~~iv---~-Dd~~~I~~al~~a~~~~~DlVIttGGts~ 101 (185)
T 3rfq_A 50 SGPLVTELLTEAGFVVDGVVAV---E-ADEVDIRNALNTAVIGGVDLVVSVGGTGV 101 (185)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEE---C-SCHHHHHHHHHHHHHTTCSEEEEESCCSS
T ss_pred HHHHHHHHHHHCCCEEEEEEEe---C-CCHHHHHHHHHHHHhCCCCEEEECCCCCC
Confidence 3456888999999887765433 2 4456666666543 57999998876654
No 295
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=47.54 E-value=60 Score=27.70 Aligned_cols=124 Identities=7% Similarity=-0.072 Sum_probs=69.2
Q ss_pred CCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCC-CCCHHHHHHHhhhCCCCc
Q 026235 100 DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKK 178 (241)
Q Consensus 100 l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~-~~t~e~L~~~l~~~~~~~ 178 (241)
-.+.+.||-.+..........+.+. +++++..+... . +... ..-....|. ......+++.+.+.. ..
T Consensus 74 ~~~V~~iiG~~s~~~~a~~~~~~~~---~iP~i~~~~~~-~-~~~~------~~~f~~~~~~~~~~~~~~~~l~~~~-g~ 141 (391)
T 3eaf_A 74 RYGVIAIIGWGTADTEKLSDQVDTD---KITYISASYSA-K-LLVK------PFNFYPAPDYSTQACSGLAFLASEF-GQ 141 (391)
T ss_dssp TTCCSEEEECCHHHHHHHHHHHHHH---TCEEEESCCCG-G-GTTS------TTEECSSCCHHHHHHHHHHHHHHHH-CS
T ss_pred hcCcEEEEEcCcHHHHHHHHHHhhc---CCeEEecccch-h-hcCC------CcEEEeCCCHHHHHHHHHHHHHHhc-CC
Confidence 3689999987766666666766654 46666654322 2 2112 211112232 223455666665531 23
Q ss_pred cEEEEEcc-CC-----CchhHHHHHHhCCCeeeEeeeeeeecCCCChHHHHHH--c--CCCCEEEEECC
Q 026235 179 CTVLYPAS-AK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQ--A--LSIPVVAVASP 237 (241)
Q Consensus 179 ~~iL~~~g-~~-----~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~--l--~~id~IvFtSp 237 (241)
++|.++.+ +. ....+.+.|++.|.++.....|.... .+ ....... + .++|+|++.+.
T Consensus 142 ~~iaii~~~~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~-~d-~~~~~~~~~l~~~~~dav~~~~~ 208 (391)
T 3eaf_A 142 GKLALAYDSKVAYSRSPIGAIKKAAPSLGLQVVGDYDLPLRA-TE-ADAERIAREMLAADPDYVWCGNT 208 (391)
T ss_dssp EEEEEEECTTCHHHHTTHHHHHHHTGGGTEEEEEEEECCTTC-CH-HHHHHHHHHHHTTCCSEEEECSC
T ss_pred CEEEEEEecCChhHHHHHHHHHHHHHHcCCceeeeeccCCCC-cC-HHHHHHHHHHHHcCCCEEEEecC
Confidence 68888876 32 23467888889998876655554321 11 1222333 3 58999887654
No 296
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=47.52 E-value=71 Score=26.77 Aligned_cols=133 Identities=17% Similarity=0.181 Sum_probs=0.0
Q ss_pred hHHHHHHhcCCCccEEE-EeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHHHH---HHhhhccCCCCceeecCC-CCCHH
Q 026235 91 DRLSSVLNADTIFDWII-ITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF---EEVIQSSKCSLDVAFSPS-KATGK 165 (241)
Q Consensus 91 ~~l~~~l~~l~~~d~Ii-FTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~L---~~~~~~~~~Gi~~~~~p~-~~t~e 165 (241)
..+.+.+ .-...|.|| ..+..........+.+.+ ++++..+......- ... ..-..+.+. .....
T Consensus 79 ~~~~~l~-~~~~v~~iig~~~s~~~~~~~~~~~~~~---ip~v~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 148 (386)
T 3sg0_A 79 QNARKLL-SEEKVDVLIGSSLTPVSLPLIDIAAEAK---TPLMTMAAAAILVAPMDERR------KWVYKVVPNDDIMAE 148 (386)
T ss_dssp HHHHHHH-HTSCCSEEECCSSHHHHHHHHHHHHHTT---CCEEECCCCGGGTCSCCTTG------GGEEECSCCHHHHHH
T ss_pred HHHHHHH-hhcCceEEECCCCchhHHHHHHHHHhcC---CeEEEecCCCccccccCCCC------CcEEecCCCcHHHHH
Q ss_pred HHHHHhhhCCCCccEEEEEccCC-----CchhHHHHHHhCCCeeeEeeeeeeecCCCChHHHHHHc-CCCCEEEEEC
Q 026235 166 ILASELPKNGKKKCTVLYPASAK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA-LSIPVVAVAS 236 (241)
Q Consensus 166 ~L~~~l~~~~~~~~~iL~~~g~~-----~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~l-~~id~IvFtS 236 (241)
.+++.+.+... ++|.++..+. ....+.+.|++.|+++.....|... ..+....+.+.. .++|+|++.+
T Consensus 149 ~~~~~l~~~g~--~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~-~~d~~~~~~~~~~~~~dav~~~~ 222 (386)
T 3sg0_A 149 AIGKYIAKTGA--KKVGYIGFSDAYGEGYYKVLAAAAPKLGFELTTHEVYARS-DASVTGQVLKIIATKPDAVFIAS 222 (386)
T ss_dssp HHHHHHHHTTC--CEEEEEEESSHHHHHHHHHHHHHHHHHTCEECCCEEECTT-CSCCHHHHHHHHHTCCSEEEEEC
T ss_pred HHHHHHHhcCC--CEEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEEeeCCC-CCcHHHHHHHHHhcCCCEEEEec
No 297
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=46.86 E-value=57 Score=27.63 Aligned_cols=134 Identities=12% Similarity=0.055 Sum_probs=0.0
Q ss_pred hHHHHHHhcCCCccEEE-EeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHHHHHH--hhhccCCCCceeecCC-CCCHHH
Q 026235 91 DRLSSVLNADTIFDWII-ITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEE--VIQSSKCSLDVAFSPS-KATGKI 166 (241)
Q Consensus 91 ~~l~~~l~~l~~~d~Ii-FTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~L~~--~~~~~~~Gi~~~~~p~-~~t~e~ 166 (241)
....+.+ ...+.+.|| ..+..........+.+.+ ++++..+..+...-.. . ..-..+.+. ......
T Consensus 63 ~~~~~li-~~~~v~~iiG~~~s~~~~a~~~~~~~~~---ip~i~~~~~~~~~~~~~~~------~~~f~~~~~~~~~~~~ 132 (379)
T 3n0w_A 63 SIAREWF-DRDGVDAIFDVVNSGTALAINNLVKDKK---KLAFITAAAADQIGGTECN------GYGIGFLYNFTSIVKT 132 (379)
T ss_dssp HHHHHHH-HHSCCCEEEECCCHHHHHHHHHHHHHHT---CEEEECSCCCTTTTTTTCC------SSEEECSCCHHHHHHH
T ss_pred HHHHHHH-HhCCceEEEcCCCcHHHHHHHHHHHHcC---ceEEEcCCCchhhhcccCC------CcEEEEeCChHHHHHH
Q ss_pred HHHHhhhCCCCccEEEEEccCCC-----chhHHHHHHhCCCeeeEeeeeeeecCCCChHHHHHHc-CCCCEEEEECC
Q 026235 167 LASELPKNGKKKCTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA-LSIPVVAVASP 237 (241)
Q Consensus 167 L~~~l~~~~~~~~~iL~~~g~~~-----~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~l-~~id~IvFtSp 237 (241)
+++.+.+. ..+++.++..+.. ...+.+.|++.|.++.....|... ..+....+.+.. .++|+|++.+.
T Consensus 133 ~~~~l~~~--g~~~vaii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~-~~d~~~~l~~i~~~~~d~v~~~~~ 206 (379)
T 3n0w_A 133 VVQAQLAK--GYKTWFLMLPDAAYGDLMNAAIRRELTAGGGQIVGSVRFPFE-TQDFSSYLLQAKASGAQLIVSTSG 206 (379)
T ss_dssp HHHHHHHT--TCCEEEEEEESSHHHHHHHHHHHHHHHHHTCEEEEEEEECTT-CCCCHHHHHHHHHHTCSEEEECCC
T ss_pred HHHHHHHc--CCcEEEEEecccchhHHHHHHHHHHHHHcCCEEEEEEeCCCC-CCCHHHHHHHHHHCCCCEEEEecc
No 298
>4ici_A Putative flavoprotein; PF12682 family protein, flavodoxin_4, structural genomics, J center for structural genomics, JCSG; HET: MSE FMN EPE; 1.40A {Bacteroides eggerthii}
Probab=46.84 E-value=6.8 Score=30.56 Aligned_cols=34 Identities=15% Similarity=0.156 Sum_probs=22.2
Q ss_pred cCCCccEEEEeCHH-------HHHHHHHHHHhcCCCCcEEEEeC
Q 026235 99 ADTIFDWIIITSPE-------AGSVFLEAWKEAGTPNVRIGVVG 135 (241)
Q Consensus 99 ~l~~~d~IiFTS~~-------aV~~f~~~l~~~~~~~~~i~aIG 135 (241)
++..||.|||-+|. .++.|++.+ .+.+.+++.+|
T Consensus 84 ~l~~yD~iilg~Pvy~g~~~~~~~~fl~~~---~l~gk~v~~f~ 124 (171)
T 4ici_A 84 NIGTYDVVFIGYPIWWDLAPRIINTFIEGH---SLKGKTVVPFA 124 (171)
T ss_dssp TGGGCSEEEEEEECBTTBCCHHHHHHHHHS---CCTTSEEEEEE
T ss_pred cHhHCCEEEEecccccCCchHHHHHHHHHc---CCCcCEEEEEE
Confidence 45789999999874 566666543 34555555543
No 299
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}
Probab=46.44 E-value=24 Score=28.94 Aligned_cols=36 Identities=11% Similarity=0.074 Sum_probs=28.5
Q ss_pred cCCCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEe
Q 026235 44 ASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (241)
Q Consensus 44 ~~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (241)
...++.||++|||..... ...+++.|.+.|++|..+
T Consensus 7 ~~~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~ 43 (278)
T 3sx2_A 7 SEGPLTGKVAFITGAARGQGRAHAVRLAADGADIIAV 43 (278)
T ss_dssp --CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEE
Confidence 456788999999988754 678999999999998754
No 300
>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}
Probab=46.38 E-value=34 Score=26.43 Aligned_cols=70 Identities=21% Similarity=0.176 Sum_probs=44.4
Q ss_pred CeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHH--------HHHHHH
Q 026235 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSV--------FLEAWK 122 (241)
Q Consensus 51 ~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~--------f~~~l~ 122 (241)
++|+|..-...-..+.+.|++.|+++..++. .+ .+..+|.||++-...-.+ +.+.+.
T Consensus 1 m~i~vl~~~g~~~~~~~~l~~~G~~~~~~~~--------~~-------~~~~~dglil~GG~~~~~~~~~~~~~~~~~i~ 65 (186)
T 2ywj_A 1 MIIGVLAIQGDVEEHEEAIKKAGYEAKKVKR--------VE-------DLEGIDALIIPGGESTAIGKLMKKYGLLEKIK 65 (186)
T ss_dssp CEEEEECSSSCCHHHHHHHHHTTSEEEEECS--------GG-------GGTTCSEEEECCSCHHHHHHHHHHTTHHHHHH
T ss_pred CEEEEEecCcchHHHHHHHHHCCCEEEEECC--------hH-------HhccCCEEEECCCCchhhhhhhhccCHHHHHH
Confidence 4677776545556678999999998776552 11 246789999988643221 222222
Q ss_pred hcCCCCcEEEEeCHHH
Q 026235 123 EAGTPNVRIGVVGAGT 138 (241)
Q Consensus 123 ~~~~~~~~i~aIG~~T 138 (241)
..+++++.|.-.-
T Consensus 66 ---~~~~PilGIC~G~ 78 (186)
T 2ywj_A 66 ---NSNLPILGTCAGM 78 (186)
T ss_dssp ---TCCCCEEEETHHH
T ss_pred ---hcCCcEEEECHHH
Confidence 2467888877653
No 301
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=46.19 E-value=54 Score=24.84 Aligned_cols=13 Identities=0% Similarity=-0.097 Sum_probs=7.4
Q ss_pred cCCCCEEEEECCc
Q 026235 226 ALSIPVVAVASPS 238 (241)
Q Consensus 226 l~~id~IvFtSps 238 (241)
+.+.|.|+|-||.
T Consensus 54 ~~~~d~ii~Gspt 66 (159)
T 3fni_A 54 VGRCTGLVIGMSP 66 (159)
T ss_dssp HHTEEEEEEECCB
T ss_pred HHhCCEEEEEcCc
Confidence 3456666666653
No 302
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=46.19 E-value=13 Score=29.58 Aligned_cols=60 Identities=17% Similarity=0.147 Sum_probs=36.0
Q ss_pred cEEEEEccCCCch--------hHHH----HHHhC--CCeeeEeeeeeeecC-------CCC---hHHHHHHcCCCCEEEE
Q 026235 179 CTVLYPASAKASN--------EIEE----GLSNR--GFEVVRLNTYTTEPV-------HHV---DQTVLKQALSIPVVAV 234 (241)
Q Consensus 179 ~~iL~~~g~~~~~--------~L~~----~L~~~--G~~V~~~~vY~~~~~-------~~~---~~~~~~~l~~id~IvF 234 (241)
.+|+++.|....+ .+.+ .|++. |+++..+.+++...+ ... ..++.+.+...|+|||
T Consensus 12 ~~il~i~GS~r~~S~t~~La~~~~~~~~~~l~~~~~g~eve~idL~d~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~ivi 91 (191)
T 3k1y_A 12 RTLAVISAGLSTPSSTRQIADSISEAVTAAVSARGEALSVSTIELSELIPDLMTAMTTRVHTTKLEEITSALSASDGLVV 91 (191)
T ss_dssp EEEEEEECCCSSSCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCHHHHTTTTSSSCCCHHHHHHHHHHHHCSEEEE
T ss_pred ceEEEEECCCCCCCHHHHHHHHHHHHhHHHHHhcCCCceEEEEEHHhCCCcccChhhcCCCCHHHHHHHHHHHHCCEEEE
Confidence 5788888865432 2333 34444 678877777655321 011 1244555678999999
Q ss_pred ECCc
Q 026235 235 ASPS 238 (241)
Q Consensus 235 tSps 238 (241)
.||.
T Consensus 92 ~sP~ 95 (191)
T 3k1y_A 92 ATPV 95 (191)
T ss_dssp EEEC
T ss_pred EcCc
Confidence 9984
No 303
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}
Probab=45.95 E-value=1.3e+02 Score=25.22 Aligned_cols=34 Identities=15% Similarity=0.224 Sum_probs=27.2
Q ss_pred CCCCCCeEEEeCCCC-ChHHHHHHHHH--CCCcEEEe
Q 026235 46 ASNSNPKVVVTRERG-KNGKLIKALAK--HRIDCLEL 79 (241)
Q Consensus 46 ~~l~g~~VLitR~~~-~~~~l~~~L~~--~G~~v~~~ 79 (241)
..+.+|+||||.... -+..+.+.|.+ .|++|..+
T Consensus 6 ~~~~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~ 42 (362)
T 3sxp_A 6 DELENQTILITGGAGFVGSNLAFHFQENHPKAKVVVL 42 (362)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEE
T ss_pred hhcCCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEE
Confidence 457789999998865 36678888888 89998875
No 304
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=45.91 E-value=20 Score=30.17 Aligned_cols=52 Identities=13% Similarity=0.125 Sum_probs=34.6
Q ss_pred cEEEEEccC---CCchhHHHHHHhCCCeeeEeeeeeeecCCCChHHHHHHcCCCCEEEEECC
Q 026235 179 CTVLYPASA---KASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASP 237 (241)
Q Consensus 179 ~~iL~~~g~---~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~l~~id~IvFtSp 237 (241)
+++|++-|. .+...|.+.|++.|++|+.+..-.- ..... .+.++|+||+-..
T Consensus 5 ~~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~---~~~~~----~L~~yDvIIl~d~ 59 (259)
T 3rht_A 5 TRVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVG---LDVGE----LLAKQDLVILSDY 59 (259)
T ss_dssp -CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTTSC---BCSSH----HHHTCSEEEEESC
T ss_pred ceEEEECCCCchhHHHHHHHHHHhCCceEEEeccccc---ccChh----HHhcCCEEEEcCC
Confidence 588999664 4557799999999999877653211 11112 2468999999753
No 305
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=45.75 E-value=74 Score=27.41 Aligned_cols=82 Identities=16% Similarity=0.182 Sum_probs=49.2
Q ss_pred CCCeEEEeCCCCC-----hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeC--HHHHHHHHHHH
Q 026235 49 SNPKVVVTRERGK-----NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS--PEAGSVFLEAW 121 (241)
Q Consensus 49 ~g~~VLitR~~~~-----~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS--~~aV~~f~~~l 121 (241)
..++|.+..+... .+.+.+.++++|+++.....|.... .+.......++. .+.|.|++++ +.....|+..+
T Consensus 163 ~~~~vail~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~~-~d~~~~l~~i~~-~~~d~v~~~~~~~~~~~~~~~~~ 240 (419)
T 3h5l_A 163 PNNKIAIITGPGIYSVNIANAIRDGAGEYGYDVSLFETVAIPV-SDWGPTLAKLRA-DPPAVIVVTHFYPQDQALFMNQF 240 (419)
T ss_dssp SSSEEEEEECSSHHHHHHHHHHHHHGGGGTCEEEEEEECCSSC-SCCHHHHHHHHH-SCCSEEEECCCCHHHHHHHHHHH
T ss_pred CCCEEEEEEcCcchhHHHHHHHHHHHHHcCCeEEEEecCCCCC-ccHHHHHHHHHh-cCCCEEEEccccCchHHHHHHHH
Confidence 4478877766532 3456667778899887544433211 233333333433 5789999874 56677788888
Q ss_pred HhcCCCCcEEEE
Q 026235 122 KEAGTPNVRIGV 133 (241)
Q Consensus 122 ~~~~~~~~~i~a 133 (241)
.+.++ +..++.
T Consensus 241 ~~~g~-~~~~~~ 251 (419)
T 3h5l_A 241 MTDPT-NSLVYL 251 (419)
T ss_dssp TTSCC-SCEEEE
T ss_pred HHcCC-CceEEe
Confidence 87777 344443
No 306
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=45.59 E-value=11 Score=30.87 Aligned_cols=52 Identities=17% Similarity=0.058 Sum_probs=31.7
Q ss_pred HHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCH-------HHHHHHHHHH
Q 026235 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP-------EAGSVFLEAW 121 (241)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~-------~aV~~f~~~l 121 (241)
.+.+.+++.|.++..+.+.+ ..|.. +..+.+...|.|||.+| ..++.|++.+
T Consensus 51 ~~~~~l~~~g~ev~~~dL~~---~~Dv~---~~~~~l~~aD~iv~~~P~y~~~~p~~lK~~iD~v 109 (218)
T 3rpe_A 51 VAADFLRESGHQVKITTVDQ---GYDIE---SEIENYLWADTIIYQMPAWWMGEPWILKKYIDEV 109 (218)
T ss_dssp HHHHHHHHTTCCEEEEEGGG---CCCHH---HHHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHH
T ss_pred HHHHHHhhCCCEEEEEECCC---ccCHH---HHHHHHHhCCEEEEECChHhccCCHHHHHHHHHH
Confidence 34445666798888766543 12322 33334567899999886 4456666654
No 307
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=45.51 E-value=71 Score=21.88 Aligned_cols=106 Identities=14% Similarity=0.145 Sum_probs=63.4
Q ss_pred CCeEEEeCCCC-ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEe----CHHHHHHHHHHHHhc
Q 026235 50 NPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAWKEA 124 (241)
Q Consensus 50 g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFT----S~~aV~~f~~~l~~~ 124 (241)
+++||+.-... ....+...|++.|+++... .+..+..+.+. -..+|.|+.- ..++.+.+. .+.+.
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~al~~~~-~~~~dlii~D~~~p~~~g~~~~~-~lr~~ 71 (120)
T 3f6p_A 2 DKKILVVDDEKPIADILEFNLRKEGYEVHCA--------HDGNEAVEMVE-ELQPDLILLDIMLPNKDGVEVCR-EVRKK 71 (120)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------SSHHHHHHHHH-TTCCSEEEEETTSTTTHHHHHHH-HHHTT
T ss_pred CCeEEEEECCHHHHHHHHHHHHhCCEEEEEe--------CCHHHHHHHHh-hCCCCEEEEeCCCCCCCHHHHHH-HHHhc
Confidence 36788887754 3566788899999776432 23344444453 3578988874 335655443 34432
Q ss_pred CCCCcEEEEeC-HH---HHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhC
Q 026235 125 GTPNVRIGVVG-AG---TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (241)
Q Consensus 125 ~~~~~~i~aIG-~~---Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~ 174 (241)
.+.+++.+. .. ......+. |.. ++..+..+.+.|...+...
T Consensus 72 --~~~~ii~~t~~~~~~~~~~~~~~------ga~-~~l~KP~~~~~l~~~i~~~ 116 (120)
T 3f6p_A 72 --YDMPIIMLTAKDSEIDKVIGLEI------GAD-DYVTKPFSTRELLARVKAN 116 (120)
T ss_dssp --CCSCEEEEEESSCHHHHHHHHHT------TCC-EEEEESCCHHHHHHHHHHH
T ss_pred --CCCCEEEEECCCChHHHHHHHhC------Ccc-eeEcCCCCHHHHHHHHHHH
Confidence 245555443 22 22333455 765 5777788999998887643
No 308
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=45.48 E-value=1.2e+02 Score=26.21 Aligned_cols=121 Identities=11% Similarity=0.045 Sum_probs=64.2
Q ss_pred CCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCCCCccE
Q 026235 101 TIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCT 180 (241)
Q Consensus 101 ~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~~~~~~ 180 (241)
..+|.||.+|..--+.+.+...+ .++++++.++... ..- .+.. +..+.+.+.=|+-.+.....+.++
T Consensus 85 ~g~d~Ii~~g~~~~~~~~~vA~~--~Pdv~fv~id~~~----~~~------Nv~s-v~~~~~eg~ylaG~~A~~~tk~~k 151 (356)
T 3s99_A 85 AGNKLIFTTSFGYMDPTVKVAKK--FPDVKFEHATGYK----TAD------NMSA-YNARFYEGRYVQGVIAAKMSKKGI 151 (356)
T ss_dssp TTCSEEEECSGGGHHHHHHHHTT--CTTSEEEEESCCC----CBT------TEEE-EEECHHHHHHHHHHHHHHHCSSCE
T ss_pred CCCCEEEECCHHHHHHHHHHHHH--CCCCEEEEEeccc----cCC------cEEE-EEechhHHHHHHHHHHHHhcCCCE
Confidence 67999999887666655554433 3678888885421 111 2222 222323333333332222223479
Q ss_pred EEEEccCCCch------hHHHHHHhCCCeeeEeeeeeeecCCCC-hHHHHHHc--CCCCEEEE
Q 026235 181 VLYPASAKASN------EIEEGLSNRGFEVVRLNTYTTEPVHHV-DQTVLKQA--LSIPVVAV 234 (241)
Q Consensus 181 iL~~~g~~~~~------~L~~~L~~~G~~V~~~~vY~~~~~~~~-~~~~~~~l--~~id~IvF 234 (241)
|-++.|..... -..+.++..|-++.....|........ ..+..+.+ ..+|+|.-
T Consensus 152 IGfVgg~~~p~v~~~~~GF~~G~k~~np~i~v~~~~~g~~~d~~kg~~~a~~l~~~G~DvIf~ 214 (356)
T 3s99_A 152 AGYIGSVPVPEVVQGINSFMLGAQSVNPDFRVKVIWVNSWFDPGKEADAAKALIDQGVDIITQ 214 (356)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHHHTTCTTCEEEEEECSSSCCHHHHHHHHHHHHHTTCSEEEE
T ss_pred EEEECCCccHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCChHHHHHHHHHHHhCCCcEEEE
Confidence 99998865432 245677777777776667754322211 11222222 57886543
No 309
>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}
Probab=45.16 E-value=86 Score=25.74 Aligned_cols=86 Identities=10% Similarity=0.059 Sum_probs=50.9
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcC-CCccEEE--EeCHHHHHHHHHHH
Q 026235 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD-TIFDWII--ITSPEAGSVFLEAW 121 (241)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l-~~~d~Ii--FTS~~aV~~f~~~l 121 (241)
..+.||++|||....+ ...+++.|.+.|++|...- + .....+.+.+.+... ....++. +++...++.+++.+
T Consensus 29 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~--r--~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~ 104 (275)
T 4imr_A 29 FGLRGRTALVTGSSRGIGAAIAEGLAGAGAHVILHG--V--KPGSTAAVQQRIIASGGTAQELAGDLSEAGAGTDLIERA 104 (275)
T ss_dssp HCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEE--S--STTTTHHHHHHHHHTTCCEEEEECCTTSTTHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEc--C--CHHHHHHHHHHHHhcCCeEEEEEecCCCHHHHHHHHHHH
Confidence 4578999999988754 6789999999999876431 1 112223333333222 1222221 36788888888877
Q ss_pred HhcCCCCcEEEEeC
Q 026235 122 KEAGTPNVRIGVVG 135 (241)
Q Consensus 122 ~~~~~~~~~i~aIG 135 (241)
.+.+.-+.-|.+.|
T Consensus 105 ~~~g~iD~lvnnAg 118 (275)
T 4imr_A 105 EAIAPVDILVINAS 118 (275)
T ss_dssp HHHSCCCEEEECCC
T ss_pred HHhCCCCEEEECCC
Confidence 65433344444444
No 310
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=45.15 E-value=82 Score=22.52 Aligned_cols=110 Identities=11% Similarity=0.136 Sum_probs=61.6
Q ss_pred CCeEEEeCCCCC-hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEe----CHHHHHHHHHHHHhc
Q 026235 50 NPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAWKEA 124 (241)
Q Consensus 50 g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFT----S~~aV~~f~~~l~~~ 124 (241)
+++|||.-.... ...+...|+. |+++... .+..+....+.....+|.|++- ..++.+.+ ..+.+.
T Consensus 4 ~~~ILivdd~~~~~~~l~~~L~~-~~~v~~~--------~~~~~a~~~l~~~~~~dlvi~D~~l~~~~g~~~~-~~l~~~ 73 (151)
T 3kcn_A 4 NERILLVDDDYSLLNTLKRNLSF-DFEVTTC--------ESGPEALACIKKSDPFSVIMVDMRMPGMEGTEVI-QKARLI 73 (151)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTT-TSEEEEE--------SSHHHHHHHHHHSCCCSEEEEESCCSSSCHHHHH-HHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHhcc-CceEEEe--------CCHHHHHHHHHcCCCCCEEEEeCCCCCCcHHHHH-HHHHhc
Confidence 578999877643 4556666754 7654422 3444444455444457998874 33455443 334433
Q ss_pred CCCCcEEEEe-CHHHHHHHHHhhhccCCC-CceeecCCCCCHHHHHHHhhhC
Q 026235 125 GTPNVRIGVV-GAGTASIFEEVIQSSKCS-LDVAFSPSKATGKILASELPKN 174 (241)
Q Consensus 125 ~~~~~~i~aI-G~~Ta~~L~~~~~~~~~G-i~~~~~p~~~t~e~L~~~l~~~ 174 (241)
. ++++++++ +....+...+.++. | .. ++..+..+.+.|.+.|...
T Consensus 74 ~-~~~~ii~~s~~~~~~~~~~~~~~---g~~~-~~l~KP~~~~~L~~~i~~~ 120 (151)
T 3kcn_A 74 S-PNSVYLMLTGNQDLTTAMEAVNE---GQVF-RFLNKPCQMSDIKAAINAG 120 (151)
T ss_dssp C-SSCEEEEEECGGGHHHHHHHHHH---TCCS-EEEESSCCHHHHHHHHHHH
T ss_pred C-CCcEEEEEECCCCHHHHHHHHHc---CCee-EEEcCCCCHHHHHHHHHHH
Confidence 2 45666655 44333332222111 6 54 4677788999999888654
No 311
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}
Probab=45.04 E-value=38 Score=26.02 Aligned_cols=60 Identities=10% Similarity=0.140 Sum_probs=39.2
Q ss_pred CeEEEeCCCCC-hHHHHHHHHHCCCcEEEeceE---EEeeCCCchHHHHHHhcCCCccEEEEeCH
Q 026235 51 PKVVVTRERGK-NGKLIKALAKHRIDCLELPLI---QHAQGPDTDRLSSVLNADTIFDWIIITSP 111 (241)
Q Consensus 51 ~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~---~~~~~~~~~~l~~~l~~l~~~d~IiFTS~ 111 (241)
|+||||..... ...+.+.|. +|++|..+.-- -...+.+.+.+.+.++..+.+|.||....
T Consensus 4 M~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~~~~~~D~~~~~~~~~~~~~~~~~d~vi~~ag 67 (202)
T 3d7l_A 4 MKILLIGASGTLGSAVKERLE-KKAEVITAGRHSGDVTVDITNIDSIKKMYEQVGKVDAIVSATG 67 (202)
T ss_dssp CEEEEETTTSHHHHHHHHHHT-TTSEEEEEESSSSSEECCTTCHHHHHHHHHHHCCEEEEEECCC
T ss_pred cEEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCccceeeecCCHHHHHHHHHHhCCCCEEEECCC
Confidence 48999988754 677888888 89987754210 01122344566666655567899988643
No 312
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0
Probab=45.01 E-value=63 Score=26.01 Aligned_cols=32 Identities=6% Similarity=0.008 Sum_probs=24.7
Q ss_pred CCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEE
Q 026235 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLE 78 (241)
Q Consensus 47 ~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~ 78 (241)
.+.+|++|||..... ...+++.|.+.|+++..
T Consensus 4 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~v~~ 36 (264)
T 3i4f_A 4 GRFVRHALITAGTKGLGKQVTEKLLAKGYSVTV 36 (264)
T ss_dssp --CCCEEEETTTTSHHHHHHHHHHHHTTCEEEE
T ss_pred ccccCEEEEeCCCchhHHHHHHHHHHCCCEEEE
Confidence 345789999988754 67899999999998764
No 313
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=44.43 E-value=38 Score=26.10 Aligned_cols=14 Identities=7% Similarity=0.287 Sum_probs=11.3
Q ss_pred HcCCCCEEEEECCc
Q 026235 225 QALSIPVVAVASPS 238 (241)
Q Consensus 225 ~l~~id~IvFtSps 238 (241)
.+...|+|+|-||.
T Consensus 65 ~l~~aD~ii~gsP~ 78 (198)
T 3b6i_A 65 ELADYDAIIFGTPT 78 (198)
T ss_dssp GGGGCSEEEEEEEE
T ss_pred HHHHCCEEEEEeCh
Confidence 34688999999984
No 314
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=44.43 E-value=66 Score=26.16 Aligned_cols=81 Identities=10% Similarity=0.032 Sum_probs=52.0
Q ss_pred HHHHHHHHCCCcEEEeceEEEeeCCC--chHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCCC-CcEEEEeCHHH--
Q 026235 64 KLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTP-NVRIGVVGAGT-- 138 (241)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~--~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~-~~~i~aIG~~T-- 138 (241)
-+.+.|+++|..+.....+......+ ...+.+.+..-..+|+|+..+-.....+.+.+.+.++. ++.++.++...
T Consensus 147 gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~~di~vig~d~~~~~ 226 (305)
T 3g1w_A 147 GFKETLEAEFPAIEVIAVEDGRGDSLHSRRVAHQLLEDYPNLAGIFATEANGGVGVGDAVRLESRAGEIQIISFDTDKGT 226 (305)
T ss_dssp HHHHHHHHHCTTEEEEEEEECTTCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHHHHHTTCTTTSEEEEESCCHHH
T ss_pred HHHHHHHhhCCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCceEEEECCCcchhhHHHHHHhcCCCCCeEEEEeCCCHHH
Confidence 35667777887776554433211101 12355556555678999999888888888888888774 78888887643
Q ss_pred HHHHHH
Q 026235 139 ASIFEE 144 (241)
Q Consensus 139 a~~L~~ 144 (241)
...+..
T Consensus 227 ~~~~~~ 232 (305)
T 3g1w_A 227 LDLVDE 232 (305)
T ss_dssp HHHHHT
T ss_pred HHHHHc
Confidence 344443
No 315
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=44.34 E-value=48 Score=25.42 Aligned_cols=56 Identities=21% Similarity=0.278 Sum_probs=35.0
Q ss_pred ccEEEEEccCC-----CchhHHHHHHhCCCeeeEeeeeeeecCCCChHHHHHHc--CCCCEEEEECCcc
Q 026235 178 KCTVLYPASAK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPSA 239 (241)
Q Consensus 178 ~~~iL~~~g~~-----~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~l--~~id~IvFtSps~ 239 (241)
..++++.+-.. +...+...|+..|++|..+-... ..+++.+.+ .++|+|.+++..+
T Consensus 18 ~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~------p~e~lv~aa~~~~~diV~lS~~~~ 80 (161)
T 2yxb_A 18 RYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQ------TPEQVAMAAVQEDVDVIGVSILNG 80 (161)
T ss_dssp SCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBC------CHHHHHHHHHHTTCSEEEEEESSS
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCC------CHHHHHHHHHhcCCCEEEEEeech
Confidence 35676665332 33567788899998887665441 233444443 5889888877643
No 316
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=44.31 E-value=1e+02 Score=25.98 Aligned_cols=60 Identities=7% Similarity=0.026 Sum_probs=27.4
Q ss_pred CccEEEEEccCCCchhHHHHHHhCCCeeeEeeeeeeecCCCChHHHHHHc-C-CCCEEEEECCc
Q 026235 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA-L-SIPVVAVASPS 238 (241)
Q Consensus 177 ~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~l-~-~id~IvFtSps 238 (241)
+|.+|+++...-........++..|+++..+.+-.. . ....+++.+.+ . +..+|+++++.
T Consensus 93 ~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~-~~d~~~l~~~i~~~~~~~v~~~~~~ 154 (393)
T 2huf_A 93 DGDVILIGHTGHWGDRSADMATRYGADVRVVKSKVG-Q-SLSLDEIRDALLIHKPSVLFLTQGD 154 (393)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTT-C-CCCHHHHHHHHHHHCCSEEEEESEE
T ss_pred CCCEEEEECCCcchHHHHHHHHHcCCeeEEEeCCCC-C-CCCHHHHHHHHhccCCcEEEEEccC
Confidence 455677665433222233344556766655554211 0 11122333333 2 56677776653
No 317
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*
Probab=44.03 E-value=47 Score=28.64 Aligned_cols=33 Identities=9% Similarity=0.059 Sum_probs=26.7
Q ss_pred CCCCCCCeEEEeCCCCChHHHHHHHHHCCC-cEE
Q 026235 45 SASNSNPKVVVTRERGKNGKLIKALAKHRI-DCL 77 (241)
Q Consensus 45 ~~~l~g~~VLitR~~~~~~~l~~~L~~~G~-~v~ 77 (241)
...+.|+++||+........+...|.+.|+ ++.
T Consensus 149 ~~~l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~ 182 (315)
T 3tnl_A 149 GHDIIGKKMTICGAGGAATAICIQAALDGVKEIS 182 (315)
T ss_dssp TCCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEE
T ss_pred CCCccCCEEEEECCChHHHHHHHHHHHCCCCEEE
Confidence 456889999999886667788889999998 454
No 318
>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*
Probab=43.98 E-value=25 Score=29.35 Aligned_cols=34 Identities=6% Similarity=0.058 Sum_probs=28.1
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEe
Q 026235 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (241)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (241)
..|+||++|||....+ ...+++.|.+.|++|...
T Consensus 7 ~~L~GK~alVTGas~GIG~aia~~la~~Ga~V~~~ 41 (261)
T 4h15_A 7 LNLRGKRALITAGTKGAGAATVSLFLELGAQVLTT 41 (261)
T ss_dssp CCCTTCEEEESCCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred cCCCCCEEEEeccCcHHHHHHHHHHHHcCCEEEEE
Confidence 3689999999988754 667899999999998753
No 319
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=43.92 E-value=25 Score=28.14 Aligned_cols=86 Identities=13% Similarity=0.158 Sum_probs=52.5
Q ss_pred CCeEEEeCCCCC-------hHHHHHHHHHC-CCcEEEeceEEEeeCCC--chHHHHHHhcCCCccEEEEeCHHHHHHHHH
Q 026235 50 NPKVVVTRERGK-------NGKLIKALAKH-RIDCLELPLIQHAQGPD--TDRLSSVLNADTIFDWIIITSPEAGSVFLE 119 (241)
Q Consensus 50 g~~VLitR~~~~-------~~~l~~~L~~~-G~~v~~~P~~~~~~~~~--~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~ 119 (241)
.++|++..+... ..-+.+.|+++ |.++... +......+ ...+.+.+..-.++|+|+.++-.......+
T Consensus 127 ~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~ 204 (276)
T 3ksm_A 127 ERNIALLRLRAGNASTDQREQGFLDVLRKHDKIRIIAA--PYAGDDRGAARSEMLRLLKETPTIDGLFTPNESTTIGALV 204 (276)
T ss_dssp CEEEEECBCCTTCHHHHHHHHHHHHHHTTCTTEEEEEC--CBCCSSHHHHHHHHHHHHHHCSCCCEEECCSHHHHHHHHH
T ss_pred CceEEEEEcCCCchhHHHHHHHHHHHHHhCCCcEEEEE--ecCCCcHHHHHHHHHHHHHhCCCceEEEECCchhhhHHHH
Confidence 356777655432 23355566666 6655421 11110000 133555565556889999999888888888
Q ss_pred HHHhcCC-CCcEEEEeCHH
Q 026235 120 AWKEAGT-PNVRIGVVGAG 137 (241)
Q Consensus 120 ~l~~~~~-~~~~i~aIG~~ 137 (241)
.+.+.++ .++.++..+..
T Consensus 205 al~~~g~p~di~vig~d~~ 223 (276)
T 3ksm_A 205 AIRQSGMSKQFGFIGFDQT 223 (276)
T ss_dssp HHHHTTCTTSSEEEEESCC
T ss_pred HHHHcCCCCCeEEEEeCCC
Confidence 8888887 47888888754
No 320
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=43.83 E-value=36 Score=26.77 Aligned_cols=49 Identities=14% Similarity=0.131 Sum_probs=32.6
Q ss_pred hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcC-CC--ccEEEEeCHHHH
Q 026235 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD-TI--FDWIIITSPEAG 114 (241)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l-~~--~d~IiFTS~~aV 114 (241)
...+...|++.|+++.... +.+ ++.+.+.+.+.+. .. +|.||.|-..++
T Consensus 42 ~~~L~~~l~~~G~~v~~~~---iv~-Dd~~~I~~al~~a~~~~~~DlVittGG~s~ 93 (178)
T 2pjk_A 42 GDIIKQLLIENGHKIIGYS---LVP-DDKIKILKAFTDALSIDEVDVIISTGGTGY 93 (178)
T ss_dssp HHHHHHHHHHTTCEEEEEE---EEC-SCHHHHHHHHHHHHTCTTCCEEEEESCCSS
T ss_pred HHHHHHHHHHCCCEEEEEE---EeC-CCHHHHHHHHHHHHhcCCCCEEEECCCCCC
Confidence 4568889999999877543 333 4456666666432 33 899998866554
No 321
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=43.82 E-value=55 Score=27.47 Aligned_cols=85 Identities=11% Similarity=0.025 Sum_probs=51.3
Q ss_pred CCCeEEEeCCCCC-----hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEE-eCHHHHHHHHHHHH
Q 026235 49 SNPKVVVTRERGK-----NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIII-TSPEAGSVFLEAWK 122 (241)
Q Consensus 49 ~g~~VLitR~~~~-----~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiF-TS~~aV~~f~~~l~ 122 (241)
..++|.+..+... .+.+.+.|+++|.++.....+... ..+.......+.. ...|.|++ .+......++..+.
T Consensus 150 g~~~ia~i~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~-~~d~~~~~~~l~~-~~~dai~~~~~~~~a~~~~~~~~ 227 (375)
T 4evq_A 150 GLKKAVTVTWKYAAGEEMVSGFKKSFTAGKGEVVKDITIAFP-DVEFQSALAEIAS-LKPDCVYAFFSGGGALKFIKDYA 227 (375)
T ss_dssp TCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTT-CCCCHHHHHHHHH-HCCSEEEEECCTHHHHHHHHHHH
T ss_pred CCcEEEEEecCchHHHHHHHHHHHHHHHcCCeEEEEEecCCC-CccHHHHHHHHHh-cCCCEEEEecCcchHHHHHHHHH
Confidence 3467776654431 345677889999987543333221 1233332223322 36789888 77777777888888
Q ss_pred hcCCCCcEEEEeCH
Q 026235 123 EAGTPNVRIGVVGA 136 (241)
Q Consensus 123 ~~~~~~~~i~aIG~ 136 (241)
+.++. ++++..|-
T Consensus 228 ~~g~~-vp~~~~~~ 240 (375)
T 4evq_A 228 AANLG-IPLWGPGF 240 (375)
T ss_dssp HTTCC-CCEEEEGG
T ss_pred HcCCC-ceEEecCc
Confidence 87765 66776653
No 322
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=43.69 E-value=25 Score=27.98 Aligned_cols=35 Identities=14% Similarity=0.172 Sum_probs=24.6
Q ss_pred CCCCCCCeEEEeCCCC-ChHHHHHHHHHCCCcEEEe
Q 026235 45 SASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLEL 79 (241)
Q Consensus 45 ~~~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~ 79 (241)
...+.||+||||.... -...+.+.|.+.|++|..+
T Consensus 16 ~~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~ 51 (236)
T 3e8x_A 16 NLYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAM 51 (236)
T ss_dssp -----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred ccCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEE
Confidence 3567799999999865 3678889999999887654
No 323
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=43.54 E-value=89 Score=26.38 Aligned_cols=33 Identities=15% Similarity=0.070 Sum_probs=16.1
Q ss_pred CccEEEEEccCCCchhHHHHHHhCCCeeeEeee
Q 026235 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNT 209 (241)
Q Consensus 177 ~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~~~v 209 (241)
+|.+|+++...-..-...+.++..|+++..+.+
T Consensus 92 ~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~ 124 (396)
T 2ch1_A 92 EGDRVLIAVNGIWAERAVEMSERYGADVRTIEG 124 (396)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCCeEEEEcCCcccHHHHHHHHHcCCceEEecC
Confidence 345666665543322222344556666655543
No 324
>1eo1_A Hypothetical protein MTH1175; mixed A/B protein, mixed beta sheet, strand order 321456; NMR {Methanothermobacterthermautotrophicus} SCOP: c.55.5.1
Probab=43.54 E-value=37 Score=24.59 Aligned_cols=50 Identities=8% Similarity=0.108 Sum_probs=34.1
Q ss_pred HHHHHhcCCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhC
Q 026235 118 LEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (241)
Q Consensus 118 ~~~l~~~~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~ 174 (241)
.+.+...+.+-+-+..||+...+.|++. ||++... ...+.+..++.+.+.
T Consensus 58 ~~~l~~~gv~~vi~~~iG~~a~~~L~~~------GI~v~~~-~~~~i~eal~~~~~g 107 (124)
T 1eo1_A 58 AQIIANNGVKAVIASSPGPNAFEVLNEL------GIKIYRA-TGTSVEENLKLFTEG 107 (124)
T ss_dssp HHHHHHTTCCEEEECCSSHHHHHHHHHH------TCEEEEC-CSCCHHHHHHHHHTT
T ss_pred HHHHHHCCCCEEEECCcCHHHHHHHHHC------CCEEEEc-CCCCHHHHHHHHHhC
Confidence 3344444444444455899999999999 9998543 456788887777543
No 325
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=43.47 E-value=57 Score=25.36 Aligned_cols=60 Identities=17% Similarity=0.145 Sum_probs=39.8
Q ss_pred CCCCCCeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHH
Q 026235 46 ASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE 112 (241)
Q Consensus 46 ~~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~ 112 (241)
.++.|++|.+.++......+.+.+.+.|.++. +....+..+....+ ..+.+|+++.....
T Consensus 144 ~dL~g~~i~~~~g~~~~~~~~~~~~~~g~~~~------~~~~~~~~~~~~~l-~~g~vDa~~~~~~~ 203 (259)
T 2v25_A 144 ADMKGANIGVAQAATTKKAIGEAAKKIGIDVK------FSEFPDYPSIKAAL-DAKRVDAFSVDKSI 203 (259)
T ss_dssp GGCTTCEEEEETTCSHHHHHHHHHHHTTCCCE------EEEESSHHHHHHHH-HTTSSSEEEEEHHH
T ss_pred HHhCCCEEEEecCCchHHHHHHHHHhcCCcee------EEEeCCHHHHHHHH-HcCCCcEEEecHHH
Confidence 46789999998877666677778888887532 22223444455555 35889988765443
No 326
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=43.47 E-value=1e+02 Score=25.86 Aligned_cols=73 Identities=11% Similarity=0.109 Sum_probs=50.8
Q ss_pred CCCeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEe--eCCCchHHHHHHhcCCCccEEEEeCH----------HHHHH
Q 026235 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHA--QGPDTDRLSSVLNADTIFDWIIITSP----------EAGSV 116 (241)
Q Consensus 49 ~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~--~~~~~~~l~~~l~~l~~~d~IiFTS~----------~aV~~ 116 (241)
.|.+|++..+.- ..+...++..|+++..+|+-.-. ...+.+.+.+.+.. .+...|+++++ .-++.
T Consensus 108 ~gd~vl~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~~v~i~~p~nptG~~~~~~~l~~ 184 (391)
T 3dzz_A 108 PGDQILVQEPVY--NMFYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLAT-PSVRMMVFCNPHNPIGYAWSEEEVKR 184 (391)
T ss_dssp TTCEEEECSSCC--HHHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTS-TTEEEEEEESSBTTTTBCCCHHHHHH
T ss_pred CCCeEEECCCCc--HHHHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhc-cCceEEEEECCCCCCCcccCHHHHHH
Confidence 577899888864 34667788899999999985211 11355677777732 46788888887 56777
Q ss_pred HHHHHHhc
Q 026235 117 FLEAWKEA 124 (241)
Q Consensus 117 f~~~l~~~ 124 (241)
+.+.+.+.
T Consensus 185 i~~~~~~~ 192 (391)
T 3dzz_A 185 IAELCAKH 192 (391)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHC
Confidence 77777654
No 327
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=43.37 E-value=19 Score=29.25 Aligned_cols=73 Identities=10% Similarity=0.089 Sum_probs=42.2
Q ss_pred HHHHHHHCCCcEEEeceEEEeeC--CC--chHHHHHHhcCCC--ccEEEEeCHHHHHHHHHHHHhcCC---CCcEEEEeC
Q 026235 65 LIKALAKHRIDCLELPLIQHAQG--PD--TDRLSSVLNADTI--FDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVG 135 (241)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~--~~--~~~l~~~l~~l~~--~d~IiFTS~~aV~~f~~~l~~~~~---~~~~i~aIG 135 (241)
+.+.|+++|..+...-++..... .. ...+.+.+....+ +|+|+.++-.....+.+.+.+.++ +++.++..+
T Consensus 158 f~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vvg~d 237 (298)
T 3tb6_A 158 FIQAHRERELFPSPDMIVTFTTEEKESKLLEKVKATLEKNSKHMPTAILCYNDEIALKVIDMLREMDLKVPEDMSIVGYD 237 (298)
T ss_dssp HHHHHHHTTCCCCGGGEEEECHHHHTTHHHHHHHHHHHHTTTSCCSEEECSSHHHHHHHHHHHHHTTCCTTTTCEEECSB
T ss_pred HHHHHHHcCCCCCcceEEEecccchhhhHHHHHHHHHhcCCCCCCeEEEEeCcHHHHHHHHHHHHcCCCCCCceEEEecC
Confidence 55667777766543222222111 11 1334555554455 788888877777777777777765 366666666
Q ss_pred HH
Q 026235 136 AG 137 (241)
Q Consensus 136 ~~ 137 (241)
..
T Consensus 238 ~~ 239 (298)
T 3tb6_A 238 DS 239 (298)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 328
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=43.32 E-value=1.3e+02 Score=25.90 Aligned_cols=56 Identities=14% Similarity=0.133 Sum_probs=33.7
Q ss_pred ccEEEEEccCCCc------hhHHHHHHhCCCeeeEeeeeeeecCCCChHHHHHHcCCCCEEEEECCc
Q 026235 178 KCTVLYPASAKAS------NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPS 238 (241)
Q Consensus 178 ~~~iL~~~g~~~~------~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~l~~id~IvFtSps 238 (241)
+++++++.+.... +.+.+.|.+.|+++..+.+. .....++.+.+.+.|.|+|.||.
T Consensus 252 ~~kv~i~y~S~~Gnt~~lA~~i~~~l~~~g~~v~~~~~~-----~~~~~~~~~~~~~~d~ii~gsp~ 313 (402)
T 1e5d_A 252 TNKVVIFYDSMWHSTEKMARVLAESFRDEGCTVKLMWCK-----ACHHSQIMSEISDAGAVIVGSPT 313 (402)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEETT-----TSCHHHHHHHHHTCSEEEEECCC
T ss_pred CCcEEEEEECCChhHHHHHHHHHHHHHhCCCeEEEEECC-----CCCHHHHHHHHHHCCEEEEECCc
Confidence 3577666665433 24556777777665444332 11233444455789999999985
No 329
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Probab=43.25 E-value=40 Score=26.24 Aligned_cols=77 Identities=17% Similarity=0.112 Sum_probs=44.7
Q ss_pred CeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHH-HH-HH------HHHHH
Q 026235 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA-GS-VF------LEAWK 122 (241)
Q Consensus 51 ~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~a-V~-~f------~~~l~ 122 (241)
++|+|..-...-....+.|++.|+++..++. .+ ++.++|.||++-... +. .+ .+.+.
T Consensus 2 m~I~il~~~~~~~~~~~~l~~~g~~~~~~~~--------~~-------~l~~~d~iil~GG~~~~~~~~~~~~~~~~~i~ 66 (196)
T 2nv0_A 2 LTIGVLGLQGAVREHIHAIEACGAAGLVVKR--------PE-------QLNEVDGLILPGGESTTMRRLIDTYQFMEPLR 66 (196)
T ss_dssp CEEEEECSSSCCHHHHHHHHHTTCEEEEECS--------GG-------GGGGCSEEEECCSCHHHHHHHHHHTTCHHHHH
T ss_pred cEEEEEEccCCcHHHHHHHHHCCCEEEEeCC--------hH-------HHhhCCEEEECCCChhhHHHHhhhHHHHHHHH
Confidence 5788876544445566999999998776542 11 235789999986532 21 11 11111
Q ss_pred hcCCCCcEEEEeCHHHHHHHH
Q 026235 123 EAGTPNVRIGVVGAGTASIFE 143 (241)
Q Consensus 123 ~~~~~~~~i~aIG~~Ta~~L~ 143 (241)
+....+++++.|.-.. +.|-
T Consensus 67 ~~~~~~~pilgIC~G~-q~l~ 86 (196)
T 2nv0_A 67 EFAAQGKPMFGTCAGL-IILA 86 (196)
T ss_dssp HHHHTTCCEEEETHHH-HHHS
T ss_pred HHHHCCCcEEEECHHH-HHHH
Confidence 1111467888887664 4443
No 330
>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*
Probab=43.24 E-value=53 Score=27.66 Aligned_cols=139 Identities=11% Similarity=0.071 Sum_probs=80.9
Q ss_pred HHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcC-----CCCcEEEEeCHHHHHHHHH
Q 026235 70 AKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAG-----TPNVRIGVVGAGTASIFEE 144 (241)
Q Consensus 70 ~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~-----~~~~~i~aIG~~Ta~~L~~ 144 (241)
++.|.+..+.|+- + ++.+...+.+.. .++..+-.|-|.-.+.+- ++.+.. ...+..+.. +
T Consensus 31 ~~~gl~~~Y~~~~-v---~~l~~~~~~~~~-~~~~G~nVTiP~K~~v~~-~~d~l~~~A~~iGAVNTi~~---------~ 95 (269)
T 3phh_A 31 KELRFLGHYHPIL-L---PLESHIKSEFLH-LGLSGANVTLPFKERAFQ-VCDKIKGIALECGAVNTLVL---------E 95 (269)
T ss_dssp HHHSSEEEEEEEE-C---CSSSCHHHHHHH-TTEEEEEECTTCHHHHHH-HSSEECGGGGGTTCCCEEEE---------E
T ss_pred HHcCCCCEEeeEE-h---hhHHHHHHHHhh-CCCCEEEEccccHHHHHH-HHhhcCHHHHHhCceeEEEe---------e
Confidence 7889887665543 2 232333334433 578999999987665542 232211 112222222 1
Q ss_pred hhhccCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEccCCCchhHHHHHHhCCCeeeEeeeeeeecCCCChHHHHH
Q 026235 145 VIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLK 224 (241)
Q Consensus 145 ~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~~~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~ 224 (241)
- | .+.....+..|++..|.+.. +++++++-+.+....+...|.+.| .++.+|.+.+.. .+++.+
T Consensus 96 ~------g---~l~G~NTD~~Gf~~~L~~~~--~k~vlvlGaGGaaraia~~L~~~G---~~v~V~nRt~~k--a~~la~ 159 (269)
T 3phh_A 96 N------D---ELVGYNTDALGFYLSLKQKN--YQNALILGAGGSAKALACELKKQG---LQVSVLNRSSRG--LDFFQR 159 (269)
T ss_dssp T------T---EEEEECCHHHHHHHHCC-----CCEEEEECCSHHHHHHHHHHHHTT---CEEEEECSSCTT--HHHHHH
T ss_pred C------C---EEEEecChHHHHHHHHHHcC--CCEEEEECCCHHHHHHHHHHHHCC---CEEEEEeCCHHH--HHHHHH
Confidence 2 2 13455678899999997643 789999966555567888898998 466777665432 222321
Q ss_pred ---------HcCCCCEEEEECCcc
Q 026235 225 ---------QALSIPVVAVASPSA 239 (241)
Q Consensus 225 ---------~l~~id~IvFtSps~ 239 (241)
.+...|+|+-|+|..
T Consensus 160 ~~~~~~~~~~l~~~DiVInaTp~G 183 (269)
T 3phh_A 160 LGCDCFMEPPKSAFDLIINATSAS 183 (269)
T ss_dssp HTCEEESSCCSSCCSEEEECCTTC
T ss_pred CCCeEecHHHhccCCEEEEcccCC
Confidence 123689898888764
No 331
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=43.19 E-value=75 Score=26.30 Aligned_cols=85 Identities=13% Similarity=0.035 Sum_probs=49.7
Q ss_pred CCCeEEEeCCCC-----ChHHHHHHHHHCCCcEEEeceEEEeeCCCc-hHHHHHHhcCCCccEEEEeC-HHHHHHHHHHH
Q 026235 49 SNPKVVVTRERG-----KNGKLIKALAKHRIDCLELPLIQHAQGPDT-DRLSSVLNADTIFDWIIITS-PEAGSVFLEAW 121 (241)
Q Consensus 49 ~g~~VLitR~~~-----~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~-~~l~~~l~~l~~~d~IiFTS-~~aV~~f~~~l 121 (241)
..++|.+..+.. ..+.+.+.|+++|+++.....+.... .+. ..+.+.. . .+.|.|++.+ ......++..+
T Consensus 134 g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~-~~~~~~~~~l~-~-~~~dav~~~~~~~~a~~~~~~~ 210 (362)
T 3snr_A 134 NVKTVGYIGYSDSYGDLWFNDLKKQGEAMGLKIVGEERFARPD-TSVAGQALKLV-A-ANPDAILVGASGTAAALPQTTL 210 (362)
T ss_dssp TCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTC-SCCHHHHHHHH-H-HCCSEEEEECCHHHHHHHHHHH
T ss_pred CCCEEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEeecCCCC-CCHHHHHHHHH-h-cCCCEEEEecCcchHHHHHHHH
Confidence 347777664432 23456778889999876433332211 232 3333333 2 4689998887 77777788888
Q ss_pred HhcCCCCcEEEEeCH
Q 026235 122 KEAGTPNVRIGVVGA 136 (241)
Q Consensus 122 ~~~~~~~~~i~aIG~ 136 (241)
.+.+++...+..+|-
T Consensus 211 ~~~g~~~p~i~~~g~ 225 (362)
T 3snr_A 211 RERGYNGLIYQTHGA 225 (362)
T ss_dssp HHTTCCSEEEECGGG
T ss_pred HHcCCCccEEeccCc
Confidence 888775333333443
No 332
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=42.91 E-value=97 Score=22.73 Aligned_cols=94 Identities=16% Similarity=0.198 Sum_probs=58.5
Q ss_pred eCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEcc-C
Q 026235 109 TSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPAS-A 187 (241)
Q Consensus 109 TS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~~~~~~iL~~~g-~ 187 (241)
.|+..++...+.+...+.+++.+. .|.... .+... .+...+.......+.+++.+.+. ++..+++... .
T Consensus 65 ~~~~~~~~a~~~~~~~~~~~~~~~-~~d~~~-~~~~~------~~D~i~~~~~~~~~~~l~~~~~~--~gG~l~~~~~~~ 134 (183)
T 2yxd_A 65 YLDGAIEVTKQNLAKFNIKNCQII-KGRAED-VLDKL------EFNKAFIGGTKNIEKIIEILDKK--KINHIVANTIVL 134 (183)
T ss_dssp CSHHHHHHHHHHHHHTTCCSEEEE-ESCHHH-HGGGC------CCSEEEECSCSCHHHHHHHHHHT--TCCEEEEEESCH
T ss_pred CCHHHHHHHHHHHHHcCCCcEEEE-ECCccc-cccCC------CCcEEEECCcccHHHHHHHHhhC--CCCEEEEEeccc
Confidence 467777776666666655555543 444443 44443 45554443335778888888777 4567666653 3
Q ss_pred CCchhHHHHHHhCCCeeeEeeeeee
Q 026235 188 KASNEIEEGLSNRGFEVVRLNTYTT 212 (241)
Q Consensus 188 ~~~~~L~~~L~~~G~~V~~~~vY~~ 212 (241)
.....+.+.|++.|+++..+.....
T Consensus 135 ~~~~~~~~~l~~~g~~~~~~~~~~~ 159 (183)
T 2yxd_A 135 ENAAKIINEFESRGYNVDAVNVFIS 159 (183)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred ccHHHHHHHHHHcCCeEEEEEeeee
Confidence 3445788999999988877654433
No 333
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=42.82 E-value=30 Score=26.84 Aligned_cols=49 Identities=10% Similarity=0.057 Sum_probs=33.0
Q ss_pred hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcC-C--CccEEEEeCHHHH
Q 026235 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD-T--IFDWIIITSPEAG 114 (241)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l-~--~~d~IiFTS~~aV 114 (241)
...+.+.|++.|+++.... +.+ ++.+.+.+.+... . .+|.||.|-..++
T Consensus 33 ~~~l~~~L~~~G~~v~~~~---iv~-Dd~~~i~~~l~~~~~~~~~DlVittGG~g~ 84 (169)
T 1y5e_A 33 GQLLHELLKEAGHKVTSYE---IVK-DDKESIQQAVLAGYHKEDVDVVLTNGGTGI 84 (169)
T ss_dssp HHHHHHHHHHHTCEEEEEE---EEC-SSHHHHHHHHHHHHTCTTCSEEEEECCCSS
T ss_pred HHHHHHHHHHCCCeEeEEE---EeC-CCHHHHHHHHHHHHhcCCCCEEEEcCCCCC
Confidence 4678889999999887543 333 4456666666432 4 7899988866553
No 334
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*
Probab=42.69 E-value=32 Score=27.96 Aligned_cols=36 Identities=8% Similarity=0.094 Sum_probs=27.9
Q ss_pred cCCCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEe
Q 026235 44 ASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (241)
Q Consensus 44 ~~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (241)
....+.|++||||..... ...+++.|.++|++|..+
T Consensus 10 ~~~~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~ 46 (278)
T 2bgk_A 10 STNRLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIA 46 (278)
T ss_dssp -CCTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CcccccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEE
Confidence 344578999999988754 678899999999987654
No 335
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*
Probab=42.45 E-value=74 Score=27.40 Aligned_cols=162 Identities=14% Similarity=0.119 Sum_probs=89.3
Q ss_pred CeEEEeCCCCChHHHH----HHHHHCCCcEEEeceEEEeeCCCchHHHHHH---hcCCCccEEEEeCHH--H----HHHH
Q 026235 51 PKVVVTRERGKNGKLI----KALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NADTIFDWIIITSPE--A----GSVF 117 (241)
Q Consensus 51 ~~VLitR~~~~~~~l~----~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l---~~l~~~d~IiFTS~~--a----V~~f 117 (241)
.-|++....+.+..+. +.+++.|++....-+=+. ...+++.+.+ +.....|.|+.--|= . -+..
T Consensus 38 LavilvG~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~---~s~~ell~~I~~lN~D~~V~GIlvqlPLP~~~~id~~~i 114 (301)
T 1a4i_A 38 LAILQVGNRDDSNLYINVKLKAAEEIGIKATHIKLPRT---TTESEVMKYITSLNEDSTVHGFLVQLPLDSENSINTEEV 114 (301)
T ss_dssp EEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECTT---CCHHHHHHHHHHHHHCTTCCEEEECSSCCCSSCCCHHHH
T ss_pred EEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCC---CCHHHHHHHHHHhcCCCCCcEEEEeccCCCCCccCHHHH
Confidence 3355555554444443 457778988776533111 1224444444 344789999987542 1 2222
Q ss_pred HHHHH-hcCCCCcEEEEeCHHHHHHHHHhhhccCCCC-ceeecCCCCCHHHHHHHhhhCC--CCccEEEEEccCC-Cchh
Q 026235 118 LEAWK-EAGTPNVRIGVVGAGTASIFEEVIQSSKCSL-DVAFSPSKATGKILASELPKNG--KKKCTVLYPASAK-ASNE 192 (241)
Q Consensus 118 ~~~l~-~~~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi-~~~~~p~~~t~e~L~~~l~~~~--~~~~~iL~~~g~~-~~~~ 192 (241)
.+.+. +...++..-+-+|. |- . |- ...+.| -|++++++.|.... ..+++++++-... ...-
T Consensus 115 ~~~I~p~KDVDG~hp~N~G~-----l~-~------g~~~~~~~P--cTp~gi~~ll~~~~i~l~gk~vvVIG~s~iVG~p 180 (301)
T 1a4i_A 115 INAIAPEKDVDGLTSINAGR-----LA-R------GDLNDCFIP--CTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAP 180 (301)
T ss_dssp HHTSCGGGBTTCCSHHHHHH-----HH-T------TCCSSCCCC--HHHHHHHHHHHTTTCCCTTCEEEEECCCTTTHHH
T ss_pred HhccCCCCCccCCChhhHHH-----Hh-c------CCCCCCccC--chHHHHHHHHHHcCCCCCCCEEEEECCCchHHHH
Confidence 33221 11234444333332 22 1 31 122444 48899998887653 4678888886653 4556
Q ss_pred HHHHHHhCCCeeeEeeeeeeecCCCChHHHHHHcCCCCEEEEECC
Q 026235 193 IEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASP 237 (241)
Q Consensus 193 L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~l~~id~IvFtSp 237 (241)
+...|...|++|.-+.-. ..++.+.+.+.|+|+-+.+
T Consensus 181 ~A~lL~~~gAtVtv~hs~--------t~~L~~~~~~ADIVI~Avg 217 (301)
T 1a4i_A 181 MHDLLLWNNATVTTCHSK--------TAHLDEEVNKGDILVVATG 217 (301)
T ss_dssp HHHHHHHTTCEEEEECTT--------CSSHHHHHTTCSEEEECCC
T ss_pred HHHHHHhCCCeEEEEECC--------cccHHHHhccCCEEEECCC
Confidence 888889999998766311 1224444578888876654
No 336
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=42.24 E-value=1.3e+02 Score=24.00 Aligned_cols=108 Identities=11% Similarity=0.042 Sum_probs=63.4
Q ss_pred CCCCeEEEeCCCC-ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEe----CHHHHHHHHHHHH
Q 026235 48 NSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAWK 122 (241)
Q Consensus 48 l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFT----S~~aV~~f~~~l~ 122 (241)
+..++|||.-... ....+...|++.|+.+... .+..+....+.. ..+|.|+.- ..++.+.+- .+.
T Consensus 35 m~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~al~~~~~-~~~DlvllD~~lp~~~G~~l~~-~lr 104 (249)
T 3q9s_A 35 MNEQRILVIEDDHDIANVLRMDLTDAGYVVDHA--------DSAMNGLIKARE-DHPDLILLDLGLPDFDGGDVVQ-RLR 104 (249)
T ss_dssp --CCEEEEECSCHHHHHHHHHHHHTTTCEEEEE--------SSHHHHHHHHHH-SCCSEEEEECCSCHHHHHHHHH-HHH
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEe--------CCHHHHHHHHhc-CCCCEEEEcCCCCCCCHHHHHH-HHH
Confidence 4457899987764 3566778888888644322 233333344433 568988874 235555433 344
Q ss_pred hcCCCCcEEEEeCH----HHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhC
Q 026235 123 EAGTPNVRIGVVGA----GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (241)
Q Consensus 123 ~~~~~~~~i~aIG~----~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~ 174 (241)
+ .++++++++.. .....+.+. |.. ++..+..+.+.|...|...
T Consensus 105 ~--~~~~~iI~lt~~~~~~~~~~a~~~------Ga~-~yl~Kp~~~~~L~~~i~~~ 151 (249)
T 3q9s_A 105 K--NSALPIIVLTARDTVEEKVRLLGL------GAD-DYLIKPFHPDELLARVKVQ 151 (249)
T ss_dssp T--TCCCCEEEEESCCSHHHHHHHHHH------TCS-EEEESSCCHHHHHHHHHHH
T ss_pred c--CCCCCEEEEECCCCHHHHHHHHHC------CCc-EEEECCCCHHHHHHHHHHH
Confidence 3 24566655432 223334455 865 5777889999999888643
No 337
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=42.12 E-value=26 Score=29.65 Aligned_cols=75 Identities=16% Similarity=0.118 Sum_probs=48.9
Q ss_pred CCCeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHH---H----HHHHHHHH
Q 026235 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE---A----GSVFLEAW 121 (241)
Q Consensus 49 ~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~---a----V~~f~~~l 121 (241)
.|.+|+++.+.-....+...++..|+++..+|+-. ....+.+.+.+.++.-.+...|++++++ | ++.+.+.+
T Consensus 94 ~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~ 172 (386)
T 2dr1_A 94 KGGKVLVTIIGAFGKRYKEVVESNGRKAVVLEYEP-GKAVKPEDLDDALRKNPDVEAVTITYNETSTGVLNPLPELAKVA 172 (386)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT-TCCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHHHHHHH
T ss_pred CCCeEEEEcCCchhHHHHHHHHHhCCceEEEecCC-CCCCCHHHHHHHHhcCCCCcEEEEEeecCCcchhCCHHHHHHHH
Confidence 47789999886433347778888999998887632 1113456677777433467899998764 2 45555555
Q ss_pred Hhc
Q 026235 122 KEA 124 (241)
Q Consensus 122 ~~~ 124 (241)
.+.
T Consensus 173 ~~~ 175 (386)
T 2dr1_A 173 KEH 175 (386)
T ss_dssp HHT
T ss_pred HHc
Confidence 543
No 338
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0
Probab=42.07 E-value=35 Score=27.98 Aligned_cols=35 Identities=17% Similarity=0.097 Sum_probs=28.6
Q ss_pred CCCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEe
Q 026235 45 SASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (241)
Q Consensus 45 ~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (241)
...+.||++|||..... ...+++.|.++|++|..+
T Consensus 5 m~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~ 40 (287)
T 3pxx_A 5 MGRVQDKVVLVTGGARGQGRSHAVKLAEEGADIILF 40 (287)
T ss_dssp CCTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred ccccCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEE
Confidence 45688999999988754 678899999999998754
No 339
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=42.05 E-value=1.4e+02 Score=24.41 Aligned_cols=125 Identities=11% Similarity=0.116 Sum_probs=0.0
Q ss_pred CCccEEEEe-CHHHHHHHHHHHHhcCCCCcEEEEeCHHHHHHHH-HhhhccCCCCceeecCC-CCCHHHHHHHhhhCCCC
Q 026235 101 TIFDWIIIT-SPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE-EVIQSSKCSLDVAFSPS-KATGKILASELPKNGKK 177 (241)
Q Consensus 101 ~~~d~IiFT-S~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~L~-~~~~~~~~Gi~~~~~p~-~~t~e~L~~~l~~~~~~ 177 (241)
.+.|.||.. +..........+.+.+ +++++++......-. .. ..-..+.+. ......+++.+.+.. .
T Consensus 68 ~~v~~iig~~~s~~~~~~~~~~~~~~---ip~v~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~-g 137 (346)
T 1usg_A 68 DGIKYVIGHLCSSSTQPASDIYEDEG---ILMISPGATNPELTQRGY------QHIMRTAGLDSSQGPTAAKYILETV-K 137 (346)
T ss_dssp TTCCEEECCSSHHHHHHHHHHHHHHT---CEEEECCCCCGGGGSSCC------SSEEECSCCGGGHHHHHHHHHHHTT-C
T ss_pred CCCCEEEcCCCcHHHHHHHHHHHHCC---CeEEeeCCCChHHhcCCC------CcEEeccCChHHHHHHHHHHHHHhc-C
Q ss_pred ccEEEEEccCCC-----chhHHHHHHhCCCeeeEeeeeeeecCCCChHHHHHHc-CCCCEEEEEC
Q 026235 178 KCTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA-LSIPVVAVAS 236 (241)
Q Consensus 178 ~~~iL~~~g~~~-----~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~l-~~id~IvFtS 236 (241)
.+++.++.++.. ...+.+.|++.|+++.....|.. ...+....+.+.+ .++|+|++.+
T Consensus 138 ~~~i~~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~-~~~d~~~~~~~l~~~~~d~i~~~~ 201 (346)
T 1usg_A 138 PQRIAIIHDKQQYGEGLARSVQDGLKAANANVVFFDGITA-GEKDFSALIARLKKENIDFVYYGG 201 (346)
T ss_dssp CSSEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEECCT-TCCCCHHHHHHHHHTTCCEEEEES
T ss_pred CCeEEEEECCCchHHHHHHHHHHHHHHcCCEEEEEeccCC-CCcCHHHHHHHHHhcCCCEEEEcC
No 340
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=41.97 E-value=1.2e+02 Score=25.53 Aligned_cols=83 Identities=12% Similarity=0.099 Sum_probs=50.8
Q ss_pred CCCeEEEeCCCC-----ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEE-eCHHHHHHHHHHHH
Q 026235 49 SNPKVVVTRERG-----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIII-TSPEAGSVFLEAWK 122 (241)
Q Consensus 49 ~g~~VLitR~~~-----~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiF-TS~~aV~~f~~~l~ 122 (241)
..++|.+..... ..+.+.+.|+++|.++.....+... ..+.......+.. .+.|+|++ .+......++..+.
T Consensus 142 g~~~iaii~~~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~-~~d~~~~~~~l~~-~~~dav~~~~~~~~a~~~~~~~~ 219 (392)
T 3lkb_A 142 KGAKVALVVHPSPFGRAPVEDARKAARELGLQIVDVQEVGSG-NLDNTALLKRFEQ-AGVEYVVHQNVAGPVANILKDAK 219 (392)
T ss_dssp TTCEEEEEECSSHHHHTTHHHHHHHHHHHTCEEEEEEECCTT-CCCCHHHHHHHHH-TTCCEEEEESCHHHHHHHHHHHH
T ss_pred CCCEEEEEEeCCchhhhHHHHHHHHHHHcCCeEEEEEeeCCC-CcCHHHHHHHHHh-cCCCEEEEecCcchHHHHHHHHH
Confidence 457887765542 2346778899999987643333221 1233332233323 57899985 77777888888888
Q ss_pred hcCCCCcEEEEe
Q 026235 123 EAGTPNVRIGVV 134 (241)
Q Consensus 123 ~~~~~~~~i~aI 134 (241)
+.+++ .+++..
T Consensus 220 ~~g~~-~~~~~~ 230 (392)
T 3lkb_A 220 RLGLK-MRHLGA 230 (392)
T ss_dssp HTTCC-CEEEEC
T ss_pred HcCCC-ceEEEe
Confidence 87764 456554
No 341
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=41.94 E-value=66 Score=26.88 Aligned_cols=93 Identities=14% Similarity=0.138 Sum_probs=54.2
Q ss_pred CCCeEEEeCCCCC-----hHHHHHHHHHCCCcEEEeceEEEeeCCCc-hHHHHHHhcCCCccEEEE-eCHHHHHHHHHHH
Q 026235 49 SNPKVVVTRERGK-----NGKLIKALAKHRIDCLELPLIQHAQGPDT-DRLSSVLNADTIFDWIII-TSPEAGSVFLEAW 121 (241)
Q Consensus 49 ~g~~VLitR~~~~-----~~~l~~~L~~~G~~v~~~P~~~~~~~~~~-~~l~~~l~~l~~~d~IiF-TS~~aV~~f~~~l 121 (241)
..++|.+..+... .+.+.+.|+++|.++...-.+.... .+. ..+.+.. . .+.|.|++ .+......++..+
T Consensus 138 g~~~ia~i~~~~~~g~~~~~~~~~~l~~~g~~v~~~~~~~~~~-~d~~~~~~~l~-~-~~~d~v~~~~~~~~a~~~~~~~ 214 (368)
T 4eyg_A 138 GIKKVATLTSDYAPGNDALAFFKERFTAGGGEIVEEIKVPLAN-PDFAPFLQRMK-D-AKPDAMFVFVPAGQGGNFMKQF 214 (368)
T ss_dssp TCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECSSS-CCCHHHHHHHH-H-HCCSEEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEEecCchHhHHHHHHHHHHHHHcCCEEEEEEeCCCCC-CcHHHHHHHHH-h-cCCCEEEEeccchHHHHHHHHH
Confidence 3467766654422 3456778889998876543333221 233 3333333 2 46788887 6666677778878
Q ss_pred HhcCCC--CcEEEEeCH-HHHHHHHH
Q 026235 122 KEAGTP--NVRIGVVGA-GTASIFEE 144 (241)
Q Consensus 122 ~~~~~~--~~~i~aIG~-~Ta~~L~~ 144 (241)
.+.++. +++++..+. .+...++.
T Consensus 215 ~~~g~~~~~v~~~~~~~~~~~~~~~~ 240 (368)
T 4eyg_A 215 AERGLDKSGIKVIGPGDVMDDDLLNS 240 (368)
T ss_dssp HHTTGGGTTCEEEEETTTTCHHHHTT
T ss_pred HHcCCCcCCceEEecCcccCHHHHHh
Confidence 887764 267777652 33444443
No 342
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}
Probab=41.74 E-value=32 Score=27.61 Aligned_cols=35 Identities=23% Similarity=0.166 Sum_probs=27.8
Q ss_pred CCCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEe
Q 026235 45 SASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (241)
Q Consensus 45 ~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (241)
+..+.||++|||..... ...+++.|.+.|++|..+
T Consensus 4 ~~~~~~k~vlITGas~giG~~~a~~l~~~G~~V~~~ 39 (253)
T 3qiv_A 4 SMRFENKVGIVTGSGGGIGQAYAEALAREGAAVVVA 39 (253)
T ss_dssp -CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred ccccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence 45678999999988754 678899999999987653
No 343
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=41.66 E-value=88 Score=21.86 Aligned_cols=111 Identities=11% Similarity=0.017 Sum_probs=65.2
Q ss_pred CCCeEEEeCCCC-ChHHHHHHHHHCCC--cEEEeceEEEeeCCCchHHHHHHhcC----CCccEEEEeC----HHHHHHH
Q 026235 49 SNPKVVVTRERG-KNGKLIKALAKHRI--DCLELPLIQHAQGPDTDRLSSVLNAD----TIFDWIIITS----PEAGSVF 117 (241)
Q Consensus 49 ~g~~VLitR~~~-~~~~l~~~L~~~G~--~v~~~P~~~~~~~~~~~~l~~~l~~l----~~~d~IiFTS----~~aV~~f 117 (241)
..++|||.-... ....+...|+..|. .+.. ..+..+..+.+... ..+|.|+.-- .++.+.
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~--------~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~~~g~~~- 78 (146)
T 3ilh_A 8 KIDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQS--------VTSGNAAINKLNELYAAGRWPSIICIDINMPGINGWEL- 78 (146)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHHTTCCEEEEEE--------ESSHHHHHHHHHHHHTSSCCCSEEEEESSCSSSCHHHH-
T ss_pred ccceEEEEeCCHHHHHHHHHHHHhcCCCeeeee--------cCCHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCHHHH-
Confidence 346799887764 35567788888886 3322 23334444444321 5689888742 345543
Q ss_pred HHHHHhc---CCCCcEEEEeCHHH----HHHHHHhhhccCCC-CceeecCCCCCHHHHHHHhhhCC
Q 026235 118 LEAWKEA---GTPNVRIGVVGAGT----ASIFEEVIQSSKCS-LDVAFSPSKATGKILASELPKNG 175 (241)
Q Consensus 118 ~~~l~~~---~~~~~~i~aIG~~T----a~~L~~~~~~~~~G-i~~~~~p~~~t~e~L~~~l~~~~ 175 (241)
+..+.+. ....++++.+.... ...+.+. | .. ++..+..+.+.|.+.|.+..
T Consensus 79 ~~~l~~~~~~~~~~~~ii~~t~~~~~~~~~~~~~~------g~~~-~~l~KP~~~~~L~~~i~~~~ 137 (146)
T 3ilh_A 79 IDLFKQHFQPMKNKSIVCLLSSSLDPRDQAKAEAS------DWVD-YYVSKPLTANALNNLYNKVL 137 (146)
T ss_dssp HHHHHHHCGGGTTTCEEEEECSSCCHHHHHHHHHC------SSCC-EEECSSCCHHHHHHHHHHHH
T ss_pred HHHHHHhhhhccCCCeEEEEeCCCChHHHHHHHhc------CCcc-eeeeCCCCHHHHHHHHHHHH
Confidence 3334442 23556666654322 2233344 6 55 57788899999999997653
No 344
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=41.40 E-value=84 Score=26.82 Aligned_cols=162 Identities=14% Similarity=0.149 Sum_probs=89.8
Q ss_pred CeEEEeCCCCChHH----HHHHHHHCCCcEEEeceEEEeeCCCchHHHHHH---hcCCCccEEEEeCH--HHH--HHHHH
Q 026235 51 PKVVVTRERGKNGK----LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NADTIFDWIIITSP--EAG--SVFLE 119 (241)
Q Consensus 51 ~~VLitR~~~~~~~----l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l---~~l~~~d~IiFTS~--~aV--~~f~~ 119 (241)
.-|++....+.+.. -.+.+++.|++...+.+-+. ...+++.+.+ +.....|.|+..-| ..+ +...+
T Consensus 37 Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~---~s~~ell~~I~~lN~d~~v~GIlvqlPlp~~id~~~v~~ 113 (285)
T 3l07_A 37 LVAIIVGNDPASKTYVASKEKACAQVGIDSQVITLPEH---TTESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIY 113 (285)
T ss_dssp EEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECTT---CCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHcCCeEEEEECCCC---CCHHHHHHHHHHHhCCCCCcEEEEcCCCCCCcCHHHHHh
Confidence 33555555544333 34567788988776544221 1234454444 44568999999987 111 22233
Q ss_pred HHH-hcCCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCC--CCccEEEEEcc-CCCchhHHH
Q 026235 120 AWK-EAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYPAS-AKASNEIEE 195 (241)
Q Consensus 120 ~l~-~~~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~--~~~~~iL~~~g-~~~~~~L~~ 195 (241)
.+. +...++.. +.-...|. . |-...+.| -|+.+.++.|.++. ..|++++++-. +....-+..
T Consensus 114 ~I~p~KDVDG~~-----~~N~G~l~-~------g~~~~~~P--cTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~ 179 (285)
T 3l07_A 114 SIKPEKDVDGFH-----PTNVGRLQ-L------RDKKCLES--CTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQ 179 (285)
T ss_dssp HSCGGGBTTCCS-----HHHHHHHH-H------TCTTCCCC--HHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHH
T ss_pred hCCcccccccCC-----hhheeehh-c------CCCCCCCC--CCHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHH
Confidence 221 11123333 33222332 1 32122343 47889998887763 46889888853 334666888
Q ss_pred HHHhCCCeeeEeeeeeeecCCCChHHHHHHcCCCCEEEEECC
Q 026235 196 GLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASP 237 (241)
Q Consensus 196 ~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~l~~id~IvFtSp 237 (241)
.|...|++|.-+.-+ ..++.+.+...|+|+-+.+
T Consensus 180 lL~~~gAtVtv~hs~--------t~~L~~~~~~ADIVI~Avg 213 (285)
T 3l07_A 180 LLLNAKATVTTCHRF--------TTDLKSHTTKADILIVAVG 213 (285)
T ss_dssp HHHHTTCEEEEECTT--------CSSHHHHHTTCSEEEECCC
T ss_pred HHHHCCCeEEEEeCC--------chhHHHhcccCCEEEECCC
Confidence 899999988554211 1123334578898887654
No 345
>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}
Probab=41.13 E-value=24 Score=29.00 Aligned_cols=36 Identities=11% Similarity=0.076 Sum_probs=25.1
Q ss_pred cCCCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEe
Q 026235 44 ASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (241)
Q Consensus 44 ~~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (241)
+..++.||+||||..... ...+++.|.+.|++|...
T Consensus 21 ~~m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~ 57 (260)
T 3gem_A 21 GHMTLSSAPILITGASQRVGLHCALRLLEHGHRVIIS 57 (260)
T ss_dssp ------CCCEEESSTTSHHHHHHHHHHHHTTCCEEEE
T ss_pred cCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEE
Confidence 356788999999988754 678899999999987754
No 346
>3ddh_A Putative haloacid dehalogenase-like family hydrol; hydrolase, HAD superfamily, ST genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides thetaiotaomicron}
Probab=40.97 E-value=34 Score=26.10 Aligned_cols=89 Identities=13% Similarity=0.043 Sum_probs=52.4
Q ss_pred CChHHHHHHHHHCC-CcEEEeceEEEeeCCCchHHHHHHhc--C-CCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeC
Q 026235 60 GKNGKLIKALAKHR-IDCLELPLIQHAQGPDTDRLSSVLNA--D-TIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVG 135 (241)
Q Consensus 60 ~~~~~l~~~L~~~G-~~v~~~P~~~~~~~~~~~~l~~~l~~--l-~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG 135 (241)
++..++.+.|++.| +.+..+. . .+.......++. + ..+|.++..+...-+.|...++..+.+.-.+++||
T Consensus 108 ~~~~~~l~~l~~~g~~~~~i~t-----~-~~~~~~~~~l~~~~~~~~f~~~~~~~kpk~~~~~~~~~~lgi~~~~~i~iG 181 (234)
T 3ddh_A 108 PGVKETLKTLKETGKYKLVVAT-----K-GDLLDQENKLERSGLSPYFDHIEVMSDKTEKEYLRLLSILQIAPSELLMVG 181 (234)
T ss_dssp TTHHHHHHHHHHHCCCEEEEEE-----E-SCHHHHHHHHHHHTCGGGCSEEEEESCCSHHHHHHHHHHHTCCGGGEEEEE
T ss_pred ccHHHHHHHHHhCCCeEEEEEe-----C-CchHHHHHHHHHhCcHhhhheeeecCCCCHHHHHHHHHHhCCCcceEEEEC
Confidence 44567777777877 6655332 1 112222222222 2 35677777666556666666666666666778888
Q ss_pred HHH---HHHHHHhhhccCCCCceeecCC
Q 026235 136 AGT---ASIFEEVIQSSKCSLDVAFSPS 160 (241)
Q Consensus 136 ~~T---a~~L~~~~~~~~~Gi~~~~~p~ 160 (241)
..- -+.++.. |+.+..++.
T Consensus 182 D~~~~Di~~a~~a------G~~~v~v~~ 203 (234)
T 3ddh_A 182 NSFKSDIQPVLSL------GGYGVHIPF 203 (234)
T ss_dssp SCCCCCCHHHHHH------TCEEEECCC
T ss_pred CCcHHHhHHHHHC------CCeEEEecC
Confidence 773 4567777 887766643
No 347
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=40.90 E-value=84 Score=26.12 Aligned_cols=134 Identities=8% Similarity=0.048 Sum_probs=0.0
Q ss_pred hHHHHHHhcCCCccEEE-EeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCC-CCCHHHHH
Q 026235 91 DRLSSVLNADTIFDWII-ITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPS-KATGKILA 168 (241)
Q Consensus 91 ~~l~~~l~~l~~~d~Ii-FTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~-~~t~e~L~ 168 (241)
..+.+.+. ...|.|| ..+..........+.+.+++-+-..+..+.-.+ +.. ..-..+.|. ......++
T Consensus 60 ~~~~~l~~--~~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~--~~~------~~~~~~~~~~~~~~~~~~ 129 (356)
T 3ipc_A 60 SVANKFVA--DGVKFVVGHANSGVSIPASEVYAENGILEITPAATNPVFTE--RGL------WNTFRTCGRDDQQGGIAG 129 (356)
T ss_dssp HHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHTTTCEEEESSCCCGGGGS--SCC------TTEEESSCCHHHHHHHHH
T ss_pred HHHHHHHH--CCCcEEEcCCCcHHHHHHHHHHHhCCCeEEecCCCCcHhhc--CCC------CcEEEecCChHHHHHHHH
Q ss_pred HHhhhCCCCccEEEEEccCCCc-----hhHHHHHHhCCCeeeEeeeeeeecCCCChHHHHHHc--CCCCEEEEECC
Q 026235 169 SELPKNGKKKCTVLYPASAKAS-----NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP 237 (241)
Q Consensus 169 ~~l~~~~~~~~~iL~~~g~~~~-----~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~l--~~id~IvFtSp 237 (241)
+.+.+.. ..+++.++.++... ..+.+.|++.|.++.....|. ............+ .++|+|++.+.
T Consensus 130 ~~l~~~~-g~~~iaii~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~--~~~~d~~~~~~~l~~~~~d~v~~~~~ 202 (356)
T 3ipc_A 130 KYLADHF-KDAKVAIIHDKTPYGQGLADETKKAANAAGVTEVMYEGVN--VGDKDFSALISKMKEAGVSIIYWGGL 202 (356)
T ss_dssp HHHHHHC-TTCCEEEEECSSHHHHHHHHHHHHHHHHTTCCCSEEEECC--TTCCCCHHHHHHHHHTTCCEEEEESC
T ss_pred HHHHHhc-CCCEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEEeeC--CCCCCHHHHHHHHHhcCCCEEEEccC
No 348
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=40.79 E-value=24 Score=30.54 Aligned_cols=65 Identities=15% Similarity=0.088 Sum_probs=39.8
Q ss_pred HHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCH-------HHHHHHHHHHHhcCCCCcEEEEeC
Q 026235 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP-------EAGSVFLEAWKEAGTPNVRIGVVG 135 (241)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~-------~aV~~f~~~l~~~~~~~~~i~aIG 135 (241)
.+.+.+.+.|+++..+.+ .. .+...+.. .+.++|.|+|-|| ..++.|++.+....+.+.+++++|
T Consensus 271 ~ia~~l~~~g~~v~~~~~---~~-~~~~~~~~---~~~~~d~ii~g~p~y~~~~~~~~~~~l~~l~~~~~~~k~~~~~~ 342 (398)
T 1ycg_A 271 ALMDGLVAGGCEVKLFKL---SV-SDRNDVIK---EILDARAVLVGSPTINNDILPVVSPLLDDLVGLRPKNKVGLAFG 342 (398)
T ss_dssp HHHHHHHHTTCEEEEEEG---GG-SCHHHHHH---HHHHCSEEEEECCCBTTBCCGGGHHHHHHHHHHCCSSCEEEEEE
T ss_pred HHHHHHHhcCCeEEEEEC---CC-CCHHHHHH---HHHHCCEEEEECCccCccchHHHHHHHHHHhccccCCCEEEEEE
Confidence 344456666766544332 21 12222322 3357899999985 358888888766556677888776
No 349
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=40.63 E-value=89 Score=26.90 Aligned_cols=56 Identities=18% Similarity=0.206 Sum_probs=34.6
Q ss_pred ccEEEEEccCCCc------hhHHHHHHhCCCeeeEeeeeeeecCCCChHHHHHHcCCCCEEEEECCc
Q 026235 178 KCTVLYPASAKAS------NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPS 238 (241)
Q Consensus 178 ~~~iL~~~g~~~~------~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~l~~id~IvFtSps 238 (241)
..+++++.+.... +.+.+.|.+.|+++..+.+.+. ....+.+.+.+.|.|+|-||.
T Consensus 256 ~~k~~i~~~S~~gnT~~la~~i~~~l~~~g~~v~~~~~~~~-----~~~~~~~~l~~~d~iiigsP~ 317 (404)
T 2ohh_A 256 DERVTVIYDTMHGSTRKMAHAIAEGAMSEGVDVRVYCLHED-----DRSEIVKDILESGAIALGAPT 317 (404)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHTTTCEEEEEETTTS-----CHHHHHHHHHTCSEEEEECCE
T ss_pred CCcEEEEEECCChHHHHHHHHHHHHHHhCCCeEEEEECCCC-----CHHHHHHHHHHCCEEEEECcc
Confidence 3566666665433 3466677777776655544322 233444456789999999984
No 350
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=40.61 E-value=24 Score=29.44 Aligned_cols=149 Identities=15% Similarity=0.157 Sum_probs=85.0
Q ss_pred CCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEE----EeCHHHHHHHHHHH
Q 026235 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII----ITSPEAGSVFLEAW 121 (241)
Q Consensus 47 ~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~Ii----FTS~~aV~~f~~~l 121 (241)
+|+||.+|||....+ ...+++.|.+.|+.|...- ... +..+++.+.++.. ..+.+. .|++..|+.+++..
T Consensus 4 sL~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~---~~~-~~~~~~~~~i~~~-g~~~~~~~~Dvt~~~~v~~~~~~~ 78 (254)
T 4fn4_A 4 SLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVE---LLE-DRLNQIVQELRGM-GKEVLGVKADVSKKKDVEEFVRRT 78 (254)
T ss_dssp GGTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE---SCH-HHHHHHHHHHHHT-TCCEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEE---CCH-HHHHHHHHHHHhc-CCcEEEEEccCCCHHHHHHHHHHH
Confidence 588999999988654 6778999999999887531 110 0112333334333 233333 47999999998876
Q ss_pred Hhc-CCCCcEEEEeC---------HHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEccCCCc-
Q 026235 122 KEA-GTPNVRIGVVG---------AGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKAS- 190 (241)
Q Consensus 122 ~~~-~~~~~~i~aIG---------~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~~~~~~iL~~~g~~~~- 190 (241)
.+. +.-++-|-.-| +.|.+..++.+ .+.+...-......+..|.+.. +.+|+...+-.+.
T Consensus 79 ~~~~G~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~-------~vNl~g~~~~~~~~~p~m~~~~--~G~IVnisS~~g~~ 149 (254)
T 4fn4_A 79 FETYSRIDVLCNNAGIMDGVTPVAEVSDELWERVL-------AVNLYSAFYSSRAVIPIMLKQG--KGVIVNTASIAGIR 149 (254)
T ss_dssp HHHHSCCCEEEECCCCCCTTCCGGGCCHHHHHHHH-------HHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTC
T ss_pred HHHcCCCCEEEECCcccCCCCChhhCCHHHHHHHH-------HHHhHHHHHHHHHHHHHHHHcC--CcEEEEEechhhcC
Confidence 543 32223222222 22333343331 2222222234455666665542 3578877653221
Q ss_pred -------------------hhHHHHHHhCCCeeeEeee
Q 026235 191 -------------------NEIEEGLSNRGFEVVRLNT 209 (241)
Q Consensus 191 -------------------~~L~~~L~~~G~~V~~~~v 209 (241)
..|..+|...|++|..+..
T Consensus 150 ~~~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~P 187 (254)
T 4fn4_A 150 GGFAGAPYTVAKHGLIGLTRSIAAHYGDQGIRAVAVLP 187 (254)
T ss_dssp SSSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEe
Confidence 2577788889999988865
No 351
>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*
Probab=40.54 E-value=22 Score=30.16 Aligned_cols=152 Identities=9% Similarity=0.073 Sum_probs=81.7
Q ss_pred hHHHH-HHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHH
Q 026235 62 NGKLI-KALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (241)
Q Consensus 62 ~~~l~-~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~ 140 (241)
+..+. ..+++.|.+..+.|+ ++.+ ++.+...+.+.. .++..+-.|-|.=...+ .++.+ +-+ .++
T Consensus 15 SP~~hn~~f~~~gl~~~Y~~~-~v~~-~~l~~~~~~~~~-~~~~G~nVTiP~K~~v~-~~~d~----------l~~-~A~ 79 (277)
T 3don_A 15 SPLMHHANFQSLNLENTYEAI-NVPV-NQFQDIKKIISE-KSIDGFNVTIPHKERII-PYLDD----------INE-QAK 79 (277)
T ss_dssp HHHHHHHHHHHTTCCCEEEEE-ECCG-GGGGGHHHHHHH-TTCSEEEECTTCTTTTG-GGCSE----------ECH-HHH
T ss_pred cHHHHHHHHHHcCcCcEEEEE-EcCH-HHHHHHHHHHhh-CCCCEEEECcCCHHHHH-HHhhh----------CCH-HHH
Confidence 33444 467888988665543 2222 222333334433 36889999988543322 11111 111 111
Q ss_pred HHHHhhhccCCC-Cce------eecCCCCCHHHHHHHhhhCC--CCccEEEEEccCCCchhHHHHHHhCCCeeeEeeeee
Q 026235 141 IFEEVIQSSKCS-LDV------AFSPSKATGKILASELPKNG--KKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYT 211 (241)
Q Consensus 141 ~L~~~~~~~~~G-i~~------~~~p~~~t~e~L~~~l~~~~--~~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~ 211 (241)
. . | ++. .+.....+..|++..|.+.. ..+++++++-+.+....+...|.+.|+. ++.+|.
T Consensus 80 ~---i------GAVNTv~~~~g~l~G~NTD~~G~~~~L~~~~~~l~~k~vlvlGaGg~g~aia~~L~~~G~~--~v~v~~ 148 (277)
T 3don_A 80 S---V------GAVNTVLVKDGKWIGYNTDGIGYVNGLKQIYEGIEDAYILILGAGGASKGIANELYKIVRP--TLTVAN 148 (277)
T ss_dssp H---H------TCCCEEEEETTEEEEECCHHHHHHHHHHHHSTTGGGCCEEEECCSHHHHHHHHHHHTTCCS--CCEEEC
T ss_pred H---h------CceeEEEecCCEEEEECChHHHHHHHHHHhCCCcCCCEEEEECCcHHHHHHHHHHHHCCCC--EEEEEe
Confidence 1 1 1 111 13345678889998887542 3577899986655556788889998862 345555
Q ss_pred eecCCC----------ChHHHHHHcCCCCEEEEECCcc
Q 026235 212 TEPVHH----------VDQTVLKQALSIPVVAVASPSA 239 (241)
Q Consensus 212 ~~~~~~----------~~~~~~~~l~~id~IvFtSps~ 239 (241)
+.+... ...++.+.+...|+|+-++|..
T Consensus 149 R~~~~a~~la~~~~~~~~~~~~~~~~~aDiVInaTp~G 186 (277)
T 3don_A 149 RTMSRFNNWSLNINKINLSHAESHLDEFDIIINTTPAG 186 (277)
T ss_dssp SCGGGGTTCCSCCEEECHHHHHHTGGGCSEEEECCC--
T ss_pred CCHHHHHHHHHhcccccHhhHHHHhcCCCEEEECccCC
Confidence 543221 1122233246789999888754
No 352
>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A
Probab=40.16 E-value=32 Score=28.15 Aligned_cols=34 Identities=15% Similarity=0.188 Sum_probs=27.6
Q ss_pred CCCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEE
Q 026235 45 SASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLE 78 (241)
Q Consensus 45 ~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~ 78 (241)
..++.||+||||....+ ...+++.|.++|++|..
T Consensus 24 ~m~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~ 58 (271)
T 4iin_A 24 AMQFTGKNVLITGASKGIGAEIAKTLASMGLKVWI 58 (271)
T ss_dssp CCCCSCCEEEETTCSSHHHHHHHHHHHHTTCEEEE
T ss_pred hcccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEE
Confidence 45678999999988754 67889999999998764
No 353
>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*
Probab=40.11 E-value=22 Score=29.58 Aligned_cols=62 Identities=13% Similarity=0.179 Sum_probs=38.3
Q ss_pred CCCeEEEeCCCC-ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCH
Q 026235 49 SNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP 111 (241)
Q Consensus 49 ~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~ 111 (241)
.+|+||||.... -+..+.+.|.+.|.++..+.--....+.+.+.+.+.++. ..+|.||.+..
T Consensus 2 ~~~~ilVtGatG~iG~~l~~~L~~~g~~v~~~~r~~~~D~~d~~~~~~~~~~-~~~d~vih~a~ 64 (321)
T 1e6u_A 2 AKQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFAS-ERIDQVYLAAA 64 (321)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTTCCTTCHHHHHHHHHH-HCCSEEEECCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCCCeEEEEecCccCCccCHHHHHHHHHh-cCCCEEEEcCe
Confidence 368999998865 367788888889987665321000112233455555532 16899998753
No 354
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=40.00 E-value=53 Score=25.35 Aligned_cols=48 Identities=15% Similarity=0.249 Sum_probs=28.9
Q ss_pred CCchhHHHHHHhCCCeeeEeeeeeeecCCCChHHHHH----Hc--CCCCEEEEECCccC
Q 026235 188 KASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLK----QA--LSIPVVAVASPSAV 240 (241)
Q Consensus 188 ~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~----~l--~~id~IvFtSps~v 240 (241)
...+.|.+.|++.|++|... ..++.. .+.+.+ .. ...|.|+.|-..++
T Consensus 40 ~ng~~L~~~L~~~G~~v~~~---~iV~Dd--~~~i~~al~~~~a~~~~DlVittGG~g~ 93 (178)
T 3iwt_A 40 ESGDIIKQLLIENGHKIIGY---SLVPDD--KIKILKAFTDALSIDEVDVIISTGGTGY 93 (178)
T ss_dssp HHHHHHHHHHHHTTCEEEEE---EEECSC--HHHHHHHHHHHHTCTTCCEEEEESCCSS
T ss_pred chHHHHHHHHHHCCCEEEEE---EEeCCC--HHHHHHHHHHHHhcCCCCEEEecCCccc
Confidence 34578999999999876433 333322 222221 12 46899998876553
No 355
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=39.85 E-value=26 Score=27.20 Aligned_cols=46 Identities=11% Similarity=0.116 Sum_probs=0.0
Q ss_pred CCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcC--CCccEEEEe
Q 026235 59 RGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD--TIFDWIIIT 109 (241)
Q Consensus 59 ~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l--~~~d~IiFT 109 (241)
......+...|++.|+++....... ++ +.+.+.+.+. ..+|.||.|
T Consensus 26 Dsn~~~l~~~l~~~G~~v~~~~iv~----Dd-~~i~~al~~a~~~~~DlVitt 73 (164)
T 3pzy_A 26 DRCGPIITEWLAQQGFSSAQPEVVA----DG-SPVGEALRKAIDDDVDVILTS 73 (164)
T ss_dssp CCHHHHHHHHHHHTTCEECCCEEEC----SS-HHHHHHHHHHHHTTCSEEEEE
T ss_pred eHHHHHHHHHHHHCCCEEEEEEEeC----CH-HHHHHHHHHHHhCCCCEEEEC
No 356
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=39.84 E-value=84 Score=26.83 Aligned_cols=162 Identities=15% Similarity=0.132 Sum_probs=89.9
Q ss_pred CeEEEeCCCCChHH----HHHHHHHCCCcEEEeceEEEeeCCCchHHHHHH---hcCCCccEEEEeCH--HHH--HHHHH
Q 026235 51 PKVVVTRERGKNGK----LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NADTIFDWIIITSP--EAG--SVFLE 119 (241)
Q Consensus 51 ~~VLitR~~~~~~~----l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l---~~l~~~d~IiFTS~--~aV--~~f~~ 119 (241)
.-|++....+.+.. -.+.+++.|++...+.+-+. ...+++.+.+ +.....|.|+..-| ..+ +...+
T Consensus 36 Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~---~s~~ell~~I~~lN~d~~v~GIlvqlPlp~~id~~~v~~ 112 (285)
T 3p2o_A 36 LAVILVGDNPASQTYVKSKAKACEECGIKSLVYHLNEN---ITQNELLALINTLNHDDSVHGILVQLPLPDHICKDLILE 112 (285)
T ss_dssp EEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECTT---CCHHHHHHHHHHHHHCTTCCEEEECSCCCTTSCHHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEECCCC---CCHHHHHHHHHHHhCCCCCCEEEecCCCCCCcCHHHHHh
Confidence 34555555544333 34467778988776544221 1234454444 44578999999887 211 22233
Q ss_pred HHH-hcCCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCC--CCccEEEEEcc-CCCchhHHH
Q 026235 120 AWK-EAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYPAS-AKASNEIEE 195 (241)
Q Consensus 120 ~l~-~~~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~--~~~~~iL~~~g-~~~~~~L~~ 195 (241)
.+. +...++.. +.-...|- . |-...+.| -|+.+.++.|..+. ..|++++++-. +....-+..
T Consensus 113 ~I~p~KDVDg~~-----~~N~g~l~-~------g~~~g~~P--cTp~gv~~lL~~~~i~l~Gk~vvVvGrs~iVG~p~A~ 178 (285)
T 3p2o_A 113 SIISSKDVDGFH-----PINVGYLN-L------GLESGFLP--CTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMAT 178 (285)
T ss_dssp HSCGGGCTTCCS-----HHHHHHHH-T------TCCSSCCC--HHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHH
T ss_pred hCCcccccccCC-----Hhhhhhhh-c------CCCCCCCC--CCHHHHHHHHHHhCCCCCCCEEEEECCCchHHHHHHH
Confidence 221 11223333 33222222 1 31110333 47888988887663 46889888864 334666888
Q ss_pred HHHhCCCeeeEeeeeeeecCCCChHHHHHHcCCCCEEEEECC
Q 026235 196 GLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASP 237 (241)
Q Consensus 196 ~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~l~~id~IvFtSp 237 (241)
.|...|++|.-+.-+ ..++.+.+.+.|+|+-+.+
T Consensus 179 lL~~~gAtVtv~h~~--------t~~L~~~~~~ADIVI~Avg 212 (285)
T 3p2o_A 179 MLLNAGATVSVCHIK--------TKDLSLYTRQADLIIVAAG 212 (285)
T ss_dssp HHHHTTCEEEEECTT--------CSCHHHHHTTCSEEEECSS
T ss_pred HHHHCCCeEEEEeCC--------chhHHHHhhcCCEEEECCC
Confidence 899999998765422 1123334578898887655
No 357
>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}
Probab=39.79 E-value=32 Score=28.53 Aligned_cols=31 Identities=16% Similarity=0.199 Sum_probs=24.9
Q ss_pred CCCeEEEeCC----------------CC-ChHHHHHHHHHCCCcEEEe
Q 026235 49 SNPKVVVTRE----------------RG-KNGKLIKALAKHRIDCLEL 79 (241)
Q Consensus 49 ~g~~VLitR~----------------~~-~~~~l~~~L~~~G~~v~~~ 79 (241)
.||+||||.+ .+ -+..+++.+.++|++|..+
T Consensus 2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga~V~lv 49 (232)
T 2gk4_A 2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYEVCLI 49 (232)
T ss_dssp -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCCEEEEE
Confidence 4789999987 44 5778999999999998854
No 358
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=39.56 E-value=46 Score=29.76 Aligned_cols=74 Identities=15% Similarity=0.115 Sum_probs=46.3
Q ss_pred CHHHHHHHhhh---CCCCccEEEEEccCC-C-----chhHHHHHHhCCCeeeEeeeeeeecCCCChHHHHHHcCCCCEEE
Q 026235 163 TGKILASELPK---NGKKKCTVLYPASAK-A-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVA 233 (241)
Q Consensus 163 t~e~L~~~l~~---~~~~~~~iL~~~g~~-~-----~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~l~~id~Iv 233 (241)
+.+.+++.-.+ .....++|+++-+.- + -+.|.+.|.+.|+++..+.+|..... ...++...+.+.|+|+
T Consensus 247 ~~~~ii~~Y~~w~~~~~~~~~v~I~Y~S~yGnTe~mA~~ia~gl~~~Gv~~~~~~~~d~~~~--~~s~i~~~i~~~~~iv 324 (410)
T 4dik_A 247 DPQRLLNHYVSVAKGDPKKGKVTVIYDSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEERP--AISEILKDIPDSEALI 324 (410)
T ss_dssp CHHHHHHHHHHHHHTCCCTTEEEEEEECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSCCC--CHHHHHHHSTTCSEEE
T ss_pred CHHHHHHHHHHhhcccccccceeeEEecccChHHHHHHHHHHHHHhcCCceEEEEeccCCCC--CHHHHHHHHHhCCeEE
Confidence 56666655432 222334565554432 2 24688899999988776666644332 2355666678999999
Q ss_pred EECCc
Q 026235 234 VASPS 238 (241)
Q Consensus 234 FtSps 238 (241)
|-||.
T Consensus 325 lGspT 329 (410)
T 4dik_A 325 FGVST 329 (410)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 99986
No 359
>2yx6_A Hypothetical protein PH0822; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=39.36 E-value=33 Score=24.75 Aligned_cols=51 Identities=12% Similarity=0.048 Sum_probs=34.0
Q ss_pred HHHHHHHhcCCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhh
Q 026235 116 VFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (241)
Q Consensus 116 ~f~~~l~~~~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~ 173 (241)
...+.+...+.+-+-+..||+...+.|++. |+++... ...+.+..++.+.+
T Consensus 54 ~~~~~L~~~gv~~vi~~~iG~~a~~~L~~~------GI~v~~~-~~~~v~eal~~~~~ 104 (121)
T 2yx6_A 54 DLPNFIKDHGAKIVLTYGIGRRAIEYFNSL------GISVVTG-VYGRISDVIKAFIG 104 (121)
T ss_dssp HHHHHHHHTTCCEEECSBCCHHHHHHHHHT------TCEEECS-BCSBHHHHHHHHHT
T ss_pred HHHHHHHHcCCCEEEECCCCHhHHHHHHHC------CCEEEEC-CCCCHHHHHHHHHc
Confidence 344445444444344445899999999999 9998443 44677777777653
No 360
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=39.28 E-value=67 Score=25.07 Aligned_cols=47 Identities=17% Similarity=0.143 Sum_probs=32.8
Q ss_pred CeEEEeCCC-CChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHH
Q 026235 51 PKVVVTRER-GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE 112 (241)
Q Consensus 51 ~~VLitR~~-~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~ 112 (241)
++|+|.... ..-..+.+.|++.|+++..++. ++ .+..+|.||++-+.
T Consensus 3 ~~I~iid~~~~~~~~~~~~l~~~G~~~~~~~~------~~---------~l~~~d~lil~G~g 50 (200)
T 1ka9_H 3 MKALLIDYGSGNLRSAAKALEAAGFSVAVAQD------PK---------AHEEADLLVLPGQG 50 (200)
T ss_dssp CEEEEECSSCSCHHHHHHHHHHTTCEEEEESS------TT---------SCSSCSEEEECCCS
T ss_pred cEEEEEeCCCccHHHHHHHHHHCCCeEEEecC------hH---------HcccCCEEEECCCC
Confidence 578877532 3456788999999998886541 11 34679999997733
No 361
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Probab=39.22 E-value=41 Score=27.25 Aligned_cols=34 Identities=12% Similarity=-0.000 Sum_probs=27.0
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEe
Q 026235 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (241)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (241)
.++.||+||||..... ...+++.|.+.|++|...
T Consensus 5 ~~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~ 39 (260)
T 2ae2_A 5 WNLEGCTALVTGGSRGIGYGIVEELASLGASVYTC 39 (260)
T ss_dssp TCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEE
Confidence 3577999999988754 678899999999987643
No 362
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=39.19 E-value=47 Score=22.26 Aligned_cols=33 Identities=15% Similarity=0.055 Sum_probs=26.1
Q ss_pred CCCCCCCeEEEeC-CCCChHHHHHHHHHCCCcEE
Q 026235 45 SASNSNPKVVVTR-ERGKNGKLIKALAKHRIDCL 77 (241)
Q Consensus 45 ~~~l~g~~VLitR-~~~~~~~l~~~L~~~G~~v~ 77 (241)
+..+.|.+|.++. .......+.+.++.+|+.+.
T Consensus 5 ~~~f~g~~~~i~g~~~~~~~~l~~~i~~~GG~~~ 38 (92)
T 4id3_A 5 SKIFKNCVIYINGYTKPGRLQLHEMIVLHGGKFL 38 (92)
T ss_dssp -CTTTTCEEEECSCCSSCHHHHHHHHHHTTCEEE
T ss_pred ccccCCEEEEEeCCCCcCHHHHHHHHHHCCCEEE
Confidence 4567889999986 44567889999999999975
No 363
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=39.13 E-value=37 Score=26.91 Aligned_cols=59 Identities=14% Similarity=0.070 Sum_probs=31.3
Q ss_pred cEEEEEccCCCch----hHHHH---HHhCCCeeeEeeeeeeecC------CCCh---HHHHHHcCCCCEEEEECCc
Q 026235 179 CTVLYPASAKASN----EIEEG---LSNRGFEVVRLNTYTTEPV------HHVD---QTVLKQALSIPVVAVASPS 238 (241)
Q Consensus 179 ~~iL~~~g~~~~~----~L~~~---L~~~G~~V~~~~vY~~~~~------~~~~---~~~~~~l~~id~IvFtSps 238 (241)
++|+++.|....+ .|.+. +.+.|+++..+.+.+ .|. ...+ .++.+.+...|+++|.||.
T Consensus 3 k~I~vi~GS~R~~S~~~~la~~~~~~~~~~~~~~~idl~d-LP~~~~d~~~~~p~~~~~l~~~i~~aD~~ii~tPe 77 (190)
T 3u7r_A 3 KTVAVMVGSLRKDSLNHKLMKVLQKLAEGRLEFHLLHIGD-LPHYNDDLWADAPESVLRLKDRIEHSDAVLAITPE 77 (190)
T ss_dssp EEEEEEESCCSTTCHHHHHHHHHHHHHTTTEEEEECCGGG-SCCCCGGGGGGCCHHHHHHHHHHHTSSEEEEECCC
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHhccCCCEEEEEeccc-CCCCCCCcccCCCHHHHHHHHHHHhCCcEEEechh
Confidence 4677777764332 22222 223566666555432 111 1111 2334446789999999985
No 364
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=39.06 E-value=1.2e+02 Score=29.15 Aligned_cols=104 Identities=14% Similarity=0.175 Sum_probs=62.8
Q ss_pred CeEEEeCCCC--C-------hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCH--------HH
Q 026235 51 PKVVVTRERG--K-------NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP--------EA 113 (241)
Q Consensus 51 ~~VLitR~~~--~-------~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~--------~a 113 (241)
|+|||.-... - ...+...|++.|++|... .+.++....+.....+|.||+.=- ++
T Consensus 1 m~ILiVdDd~~~~~~~~~~~~~~L~~~L~~~g~~v~~a--------~~g~~al~~~~~~~~~d~vilDi~lp~~~~~~~G 72 (755)
T 2vyc_A 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKS--------TSFDDGFAILSSNEAIDCLMFSYQMEHPDEHQNV 72 (755)
T ss_dssp CEEEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEE--------SSHHHHHHHHTTTCCCSEEEEECCCCSHHHHHHH
T ss_pred CeEEEEeCCccccccccHHHHHHHHHHHHhCCCEEEEE--------CCHHHHHHHHhcCCCCcEEEEeCCCCcccccccH
Confidence 4788887764 4 588999999999988754 343444445533345999998543 23
Q ss_pred HHHHHHHHHhcCCCCcEEEEeCHHHH-H--HHH--HhhhccCCCCceeecCCCCCHHH-HHHHh
Q 026235 114 GSVFLEAWKEAGTPNVRIGVVGAGTA-S--IFE--EVIQSSKCSLDVAFSPSKATGKI-LASEL 171 (241)
Q Consensus 114 V~~f~~~l~~~~~~~~~i~aIG~~Ta-~--~L~--~~~~~~~~Gi~~~~~p~~~t~e~-L~~~l 171 (241)
. .+++.+.+.+ .+++|+.+..... . ... .. |.. ++....++.++ |+..|
T Consensus 73 ~-~ll~~iR~~~-~~iPIi~lTa~~~~~~d~~~~l~~------gad-dyi~kpf~~~efl~~ri 127 (755)
T 2vyc_A 73 R-QLIGKLHERQ-QNVPVFLLGDREKALAAMDRDLLE------LVD-EFAWILEDTADFIAGRA 127 (755)
T ss_dssp H-HHHHHHHHHS-TTCCEEEEECHHHHHHTCSHHHHH------HCS-EEEETTTSCHHHHHHHH
T ss_pred H-HHHHHHHHhC-CCCCEEEEecCCcchhhccHhHhh------cCC-ceEeCCCCCHHHHHHHH
Confidence 3 2455555543 3688888876643 1 111 23 544 56666666666 44334
No 365
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}
Probab=39.01 E-value=34 Score=28.11 Aligned_cols=34 Identities=12% Similarity=0.153 Sum_probs=28.0
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEe
Q 026235 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (241)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (241)
.++.||+||||....+ ...+++.|.+.|++|...
T Consensus 10 ~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~ 44 (269)
T 3vtz_A 10 EEFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSV 44 (269)
T ss_dssp CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEE
Confidence 4678999999988754 678999999999998754
No 366
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=38.90 E-value=92 Score=21.30 Aligned_cols=107 Identities=11% Similarity=0.075 Sum_probs=63.4
Q ss_pred CCeEEEeCCCC-ChHHHHHHHHHCCC-cEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEe----CHHHHHHHHHHHHh
Q 026235 50 NPKVVVTRERG-KNGKLIKALAKHRI-DCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAWKE 123 (241)
Q Consensus 50 g~~VLitR~~~-~~~~l~~~L~~~G~-~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFT----S~~aV~~f~~~l~~ 123 (241)
..+||+.-... ....+...|+..|+ .+. ...+..+....+. ...+|.|+.- ..++.+ +...+.+
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~~v~--------~~~~~~~a~~~~~-~~~~dlvl~D~~l~~~~g~~-~~~~l~~ 75 (129)
T 1p6q_A 6 KIKVLIVDDQVTSRLLLGDALQQLGFKQIT--------AAGDGEQGMKIMA-QNPHHLVISDFNMPKMDGLG-LLQAVRA 75 (129)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHTTTCSCEE--------CCSSHHHHHHHHH-TSCCSEEEECSSSCSSCHHH-HHHHHTT
T ss_pred cCeEEEEcCCHHHHHHHHHHHHHCCCcEEE--------ecCCHHHHHHHHH-cCCCCEEEEeCCCCCCCHHH-HHHHHhc
Confidence 46788887764 35567788888886 332 1233344444453 3568888753 234554 3444544
Q ss_pred cC-CCCcEEEEeCHH----HHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhh
Q 026235 124 AG-TPNVRIGVVGAG----TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (241)
Q Consensus 124 ~~-~~~~~i~aIG~~----Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~ 173 (241)
.. .++++++.+... ....+.+. |.. ++..+..+.+.|.+.+..
T Consensus 76 ~~~~~~~~ii~~s~~~~~~~~~~~~~~------g~~-~~l~KP~~~~~l~~~i~~ 123 (129)
T 1p6q_A 76 NPATKKAAFIILTAQGDRALVQKAAAL------GAN-NVLAKPFTIEKMKAAIEA 123 (129)
T ss_dssp CTTSTTCEEEECCSCCCHHHHHHHHHH------TCS-CEECCCSSHHHHHHHHHH
T ss_pred CccccCCCEEEEeCCCCHHHHHHHHHc------CCC-EEEECCCCHHHHHHHHHH
Confidence 32 356778776432 23334455 765 477788899999888754
No 367
>2xdq_B Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=38.83 E-value=37 Score=31.25 Aligned_cols=152 Identities=16% Similarity=0.153 Sum_probs=0.0
Q ss_pred cccCCCCCCCeEEEeCCCCCh-------HHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHH
Q 026235 42 TSASASNSNPKVVVTRERGKN-------GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG 114 (241)
Q Consensus 42 ~~~~~~l~g~~VLitR~~~~~-------~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV 114 (241)
|....+....+|-|...-... .++.+.|++.|+++...-.-....-+ +..+++.+.-+..++..-
T Consensus 158 ~~~~~~~~~~~VNiiG~~~~~~~~~gD~~eik~lL~~~Gi~v~~~~~gg~~~~e--------i~~~~~A~~niv~~~~~~ 229 (511)
T 2xdq_B 158 TLGTSKTPTPSVNIIGITTLGFHNQHDCRELKQLMADLGIQVNLVIPAAATVHD--------LQRLPQAWFNLVPYREIG 229 (511)
T ss_dssp CCCCSCCSSCEEEEEEECTTCTTHHHHHHHHHHHHHHHTCEEEEEEETTCCTTT--------GGGGGGSSEEECCCTTSS
T ss_pred ccccccCCCCceEEEeccCCCCCCccHHHHHHHHHHHCCCeEEEEECCcCcHHH--------HHhhccCCEEEEEchhhh
Q ss_pred HHHHHHH-HhcCCCCcEEEEeC-HHHHHHHHHhhhccCCCCceeecCC---CCCHHHHHHHhhhC--------------C
Q 026235 115 SVFLEAW-KEAGTPNVRIGVVG-AGTASIFEEVIQSSKCSLDVAFSPS---KATGKILASELPKN--------------G 175 (241)
Q Consensus 115 ~~f~~~l-~~~~~~~~~i~aIG-~~Ta~~L~~~~~~~~~Gi~~~~~p~---~~t~e~L~~~l~~~--------------~ 175 (241)
....+.+ ++.+.+-+...-+| ..|.+.|++. + .+... ....+.+++.=.+. .
T Consensus 230 ~~~A~~Le~~~GiP~i~~~PiG~~~T~~~L~~i------a---~~~g~~~~~~~~e~~i~~~~~~~~~~~~~~~~~d~~~ 300 (511)
T 2xdq_B 230 GLTAQYLEREFGQPSVRITPMGVVETARCIRAI------Q---GVLNAQGAGVNYEAFIEQQTREVSQAAWFSRSIDCQN 300 (511)
T ss_dssp HHHHHHHHHHHCCCEECCCCCSHHHHHHHHHHH------H---HHHHTTTCCCCCHHHHHHHHHHTCCHHHHHHSHHHHT
T ss_pred HHHHHHHHHHhCCCeEeecccCHHHHHHHHHHH------H---HHhCCCcCCCChHHHHHHHHhhhhhHHHHHHHhHHHh
Q ss_pred CCccEEEEEccCCCchhHHHHH-HhCCCeeeEeeee
Q 026235 176 KKKCTVLYPASAKASNEIEEGL-SNRGFEVVRLNTY 210 (241)
Q Consensus 176 ~~~~~iL~~~g~~~~~~L~~~L-~~~G~~V~~~~vY 210 (241)
..|+++++..+....-.+...| .+.|.++..+-.|
T Consensus 301 l~Gkrv~i~gd~~~~~~l~~~L~~elGm~vv~~gt~ 336 (511)
T 2xdq_B 301 LTGKKAVVFGDNTHAAAMTKILSREMGIHVVWAGTY 336 (511)
T ss_dssp TTTCEEEEEECHHHHHHHHHHHHHHHCCEEEEEEES
T ss_pred ccCCEEEEEcCChHHHHHHHHHHHhCCCEEEEeecC
No 368
>3hn0_A Nitrate transport protein; ABC transporter, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.75A {Parabacteroides distasonis}
Probab=38.78 E-value=19 Score=30.08 Aligned_cols=114 Identities=9% Similarity=0.010 Sum_probs=0.0
Q ss_pred CccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCCCCccEE
Q 026235 102 IFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTV 181 (241)
Q Consensus 102 ~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~~~~~~i 181 (241)
+++|..|.|+..+...+.. ..+.+..+|...+-.+... |....+..... .+.+-.+.+...+|++|
T Consensus 34 ~v~~~~~~~~~~~~~al~~------G~~D~~~~~~~~~~~~~~~------g~~~~i~~~~~--~g~~~lv~~~~LkGK~I 99 (283)
T 3hn0_A 34 KVQVKVVDSPDLAQALLIK------QETDIAVLPMINAANLYNK------GIKIKLAGCPI--WGTLYLVEKTPLKEPAL 99 (283)
T ss_dssp EEEEEEESCHHHHHHHHHT------TCCSEEEEEHHHHHHHHHT------TCSCEEEEEEE--CCCCEEEECSSCCSCCE
T ss_pred cEEEEEeCCHHHHHHHHHC------CCCCEEEEcHHHHHHHHHC------CCCeEEEEEec--ccEEEEEecCCCCCCEE
Q ss_pred EEE-ccCCCchhHHHHHHhCCCeeeEeeeeeeecCCCC--hHHHHHHc--CCCCEEEEECC
Q 026235 182 LYP-ASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHV--DQTVLKQA--LSIPVVAVASP 237 (241)
Q Consensus 182 L~~-~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~--~~~~~~~l--~~id~IvFtSp 237 (241)
.++ .|....-.|...|++.|. .-...... ..+....+ +++|+++..-|
T Consensus 100 av~~~gs~~~~ll~~~L~~~Gl--------dv~~~~~~~~~~~~~~al~~G~vDa~~~~eP 152 (283)
T 3hn0_A 100 YVFGNGTTPDILTRYYLGRQRL--------DYPLNYAFNTAGEITQGILAGKVNRAVLGEP 152 (283)
T ss_dssp ECSSTTSHHHHHHHHHHHHHTC--------CCCEECSCCSHHHHHHHHHHTSCSEEEECTT
T ss_pred EecCCCCcHHHHHHHHHHHcCC--------ceEEEEccCCHHHHHHHHHcCCCCEEEeccc
No 369
>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*
Probab=38.73 E-value=1.2e+02 Score=29.35 Aligned_cols=92 Identities=18% Similarity=0.189 Sum_probs=57.2
Q ss_pred cCCCCCCCeEEEeCC--CC----ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHh--cCCCccEEEEeCHH-H-
Q 026235 44 ASASNSNPKVVVTRE--RG----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN--ADTIFDWIIITSPE-A- 113 (241)
Q Consensus 44 ~~~~l~g~~VLitR~--~~----~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~--~l~~~d~IiFTS~~-a- 113 (241)
....+.|++|+|.-. .. ....+.+.|++.|++|..+-.-. ....| ..+. ....||+||+.... +
T Consensus 523 ~~~~l~g~kVaIL~a~~dGfe~~E~~~~~~~L~~aG~~V~vVs~~~-g~~vD-----~t~~~~~s~~fDAVvlPGG~~g~ 596 (688)
T 2iuf_A 523 KLAKLDGLKVGLLASVNKPASIAQGAKLQVALSSVGVDVVVVAERX-ANNVD-----ETYSASDAVQFDAVVVADGAEGL 596 (688)
T ss_dssp CCSCCTTCEEEEECCTTCHHHHHHHHHHHHHHGGGTCEEEEEESSC-CTTCC-----EESTTCCGGGCSEEEECTTCGGG
T ss_pred CCCCCCCCEEEEEecCCCCCcHHHHHHHHHHHHHCCCEEEEEeccC-Ccccc-----cchhcCCccccCeEEecCCCccc
Confidence 345688999988876 31 23456778999999998775521 11112 1121 23579999998873 3
Q ss_pred ------------------------HHHHHHHHHhcCCCCcEEEEeCHHHHHHHHHh
Q 026235 114 ------------------------GSVFLEAWKEAGTPNVRIGVVGAGTASIFEEV 145 (241)
Q Consensus 114 ------------------------V~~f~~~l~~~~~~~~~i~aIG~~Ta~~L~~~ 145 (241)
+..|.....+ .++.|++||.+. ..|.+.
T Consensus 597 ~~~~~~~~~~~~~~~~~~L~~~~~~~~~v~~~~~---~gKpIaAIc~ap-~vL~~a 648 (688)
T 2iuf_A 597 FGADSFTVEPSAGSGASTLYPAGRPLNILLDAFR---FGKTVGALGSGS-DALESG 648 (688)
T ss_dssp CCTTTTTCCCCTTSCCCSSSCTTHHHHHHHHHHH---HTCEEEEEGGGH-HHHHHT
T ss_pred ccccccccccccccchhhcccChHHHHHHHHHHH---cCCEEEEECchH-HHHHHc
Confidence 2222222222 258999999875 488888
No 370
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=38.70 E-value=28 Score=27.17 Aligned_cols=49 Identities=8% Similarity=0.006 Sum_probs=32.1
Q ss_pred hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcC-C--CccEEEEeCHHHH
Q 026235 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD-T--IFDWIIITSPEAG 114 (241)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l-~--~~d~IiFTS~~aV 114 (241)
...+.+.|++.|+++... .+.+ ++.+.+.+.++.. . .+|.||.|-..++
T Consensus 30 ~~~l~~~L~~~G~~v~~~---~iv~-Dd~~~i~~~l~~a~~~~~~DlVittGG~g~ 81 (172)
T 1mkz_A 30 GHYLRDSAQEAGHHVVDK---AIVK-ENRYAIRAQVSAWIASDDVQVVLITGGTGL 81 (172)
T ss_dssp HHHHHHHHHHTTCEEEEE---EEEC-SCHHHHHHHHHHHHHSSSCCEEEEESCCSS
T ss_pred HHHHHHHHHHCCCeEeEE---EEeC-CCHHHHHHHHHHHHhcCCCCEEEeCCCCCC
Confidence 467889999999987764 3333 4455666666433 2 4899988865543
No 371
>1o13_A Probable NIFB protein; ribonuclease H-like motif fold, structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.83A {Thermotoga maritima} SCOP: c.55.5.1 PDB: 1t3v_A
Probab=38.55 E-value=33 Score=25.65 Aligned_cols=49 Identities=18% Similarity=0.193 Sum_probs=32.8
Q ss_pred HHHHHhcCCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhh
Q 026235 118 LEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (241)
Q Consensus 118 ~~~l~~~~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~ 173 (241)
.+.+.+.+.+-+-+..||+...+.|++. ||++... ...+.+..++.+.+
T Consensus 69 a~~L~~~gv~vVI~g~IG~~a~~~L~~~------GI~v~~~-~~g~i~eal~~~~~ 117 (136)
T 1o13_A 69 PNFVKEKGAELVIVRGIGRRAIAAFEAM------GVKVIKG-ASGTVEEVVNQYLS 117 (136)
T ss_dssp HHHHHHTTCSEEECSCCCHHHHHHHHHT------TCEEECS-CCSBHHHHHHHHHT
T ss_pred HHHHHHCCCCEEEECCCCHHHHHHHHHC------CCEEEec-CCCCHHHHHHHHHh
Confidence 3444444434344445899999999999 9998443 34677777777654
No 372
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A
Probab=38.51 E-value=39 Score=27.65 Aligned_cols=77 Identities=12% Similarity=-0.003 Sum_probs=45.9
Q ss_pred ccCCCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEE----EeCHHHHHHH
Q 026235 43 SASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII----ITSPEAGSVF 117 (241)
Q Consensus 43 ~~~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~Ii----FTS~~aV~~f 117 (241)
.-...+.||++|||....+ ...+++.|.+.|++|...- . ......+.+.+.+... ..+... +++..+++.+
T Consensus 11 ~~~~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~--~-~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~ 86 (270)
T 3is3_A 11 YIPGRLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNY--A-NSTKDAEKVVSEIKAL-GSDAIAIKADIRQVPEIVKL 86 (270)
T ss_dssp CCTTCCTTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEE--S-SCHHHHHHHHHHHHHT-TCCEEEEECCTTSHHHHHHH
T ss_pred cCCCCcCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEc--C-CCHHHHHHHHHHHHhc-CCcEEEEEcCCCCHHHHHHH
Confidence 3345688999999988754 6778999999999886421 1 0000112233333222 122322 3678888888
Q ss_pred HHHHHh
Q 026235 118 LEAWKE 123 (241)
Q Consensus 118 ~~~l~~ 123 (241)
++.+.+
T Consensus 87 ~~~~~~ 92 (270)
T 3is3_A 87 FDQAVA 92 (270)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876544
No 373
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=38.49 E-value=38 Score=27.27 Aligned_cols=83 Identities=18% Similarity=0.190 Sum_probs=52.1
Q ss_pred CeEEEeCCCCC-------hHHHHHHHHHCCCcEEEeceEEEeeCCCc----hHHHHHHhcCCCccEEEEeCHHHHHHHHH
Q 026235 51 PKVVVTRERGK-------NGKLIKALAKHRIDCLELPLIQHAQGPDT----DRLSSVLNADTIFDWIIITSPEAGSVFLE 119 (241)
Q Consensus 51 ~~VLitR~~~~-------~~~l~~~L~~~G~~v~~~P~~~~~~~~~~----~~l~~~l~~l~~~d~IiFTS~~aV~~f~~ 119 (241)
++|.+..+... ..-+.+.|+++|.++... . ....+. ..+.+.+.....+|+|+.++-...-...+
T Consensus 124 ~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~~~~--~--~~~~~~~~~~~~~~~ll~~~~~~~ai~~~nD~~A~g~~~ 199 (271)
T 2dri_A 124 AKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLAS--Q--PADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALR 199 (271)
T ss_dssp CEEEEEECCTTCHHHHHHHHHHHHHHHHHTCEEEEE--E--ECTTCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHH
T ss_pred CeEEEEECCCCCccHhHHHHHHHHHHhcCCCEEEEe--c--CCCCCHHHHHHHHHHHHHhCCCccEEEECCCcHHHHHHH
Confidence 57776654321 233567788888765421 1 111121 23455554446789999999888788888
Q ss_pred HHHhcCCCCcEEEEeCHH
Q 026235 120 AWKEAGTPNVRIGVVGAG 137 (241)
Q Consensus 120 ~l~~~~~~~~~i~aIG~~ 137 (241)
.+.+.+++++.++..+..
T Consensus 200 al~~~g~~dv~vvGfD~~ 217 (271)
T 2dri_A 200 ALQTAGKSDVMVVGFDGT 217 (271)
T ss_dssp HHHHHTCCSCEEEEEECC
T ss_pred HHHHcCCCCcEEEEecCC
Confidence 888888877888777643
No 374
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2
Probab=38.40 E-value=38 Score=27.42 Aligned_cols=38 Identities=8% Similarity=0.030 Sum_probs=27.7
Q ss_pred cccCCCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEe
Q 026235 42 TSASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (241)
Q Consensus 42 ~~~~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (241)
+....++.||+||||..... ...+++.|.+.|++|..+
T Consensus 11 ~~~~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~ 49 (249)
T 1o5i_A 11 HHMELGIRDKGVLVLAASRGIGRAVADVLSQEGAEVTIC 49 (249)
T ss_dssp -----CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred hhHHhccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEE
Confidence 34556788999999988754 678899999999987754
No 375
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=38.31 E-value=93 Score=21.22 Aligned_cols=107 Identities=13% Similarity=0.118 Sum_probs=61.1
Q ss_pred CCeEEEeCCCC-ChHHHHHHHHHCCC-cEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEe----CHHHHHHHHHHHHh
Q 026235 50 NPKVVVTRERG-KNGKLIKALAKHRI-DCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAWKE 123 (241)
Q Consensus 50 g~~VLitR~~~-~~~~l~~~L~~~G~-~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFT----S~~aV~~f~~~l~~ 123 (241)
+.+||+.-... ....+...|+..|+ .+.. ..+..+..+.+. -..+|.|+.- ..++.+ +...+.+
T Consensus 4 ~~~ilivdd~~~~~~~l~~~l~~~~~~~v~~--------~~~~~~a~~~~~-~~~~dlvi~D~~l~~~~g~~-l~~~l~~ 73 (128)
T 1jbe_A 4 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEE--------AEDGVDALNKLQ-AGGYGFVISDWNMPNMDGLE-LLKTIRA 73 (128)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHTTCCCEEE--------ESSHHHHHHHHT-TCCCCEEEEESCCSSSCHHH-HHHHHHC
T ss_pred ccEEEEECCCHHHHHHHHHHHHHcCCcEEEe--------eCCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHH-HHHHHHh
Confidence 46788887654 34567788888887 3322 123333334442 3568888763 234554 3444443
Q ss_pred c-CCCCcEEEEeCH----HHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhh
Q 026235 124 A-GTPNVRIGVVGA----GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (241)
Q Consensus 124 ~-~~~~~~i~aIG~----~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~ 173 (241)
. ..+.++++.+.. .......+. |.. ++..+..+.+.|.+.+..
T Consensus 74 ~~~~~~~~ii~~s~~~~~~~~~~~~~~------ga~-~~l~KP~~~~~l~~~i~~ 121 (128)
T 1jbe_A 74 XXAMSALPVLMVTAEAKKENIIAAAQA------GAS-GYVVKPFTAATLEEKLNK 121 (128)
T ss_dssp --CCTTCCEEEEESSCCHHHHHHHHHT------TCS-EEEESSCCHHHHHHHHHH
T ss_pred hcccCCCcEEEEecCccHHHHHHHHHh------CcC-ceeecCCCHHHHHHHHHH
Confidence 2 234566666532 223334455 765 467778899999887754
No 376
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3dij_A* 3ged_A 3geg_A*
Probab=38.28 E-value=1.1e+02 Score=24.31 Aligned_cols=79 Identities=14% Similarity=0.076 Sum_probs=47.3
Q ss_pred CCeEEEeCCCCC-hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEE--EeCHHHHHHHHHHHHhc-C
Q 026235 50 NPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII--ITSPEAGSVFLEAWKEA-G 125 (241)
Q Consensus 50 g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~Ii--FTS~~aV~~f~~~l~~~-~ 125 (241)
||+||||..... ...+++.|.+.|++|...- .+.+.+.+....+....++. +++..+++.+++.+.+. +
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~-------r~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 74 (247)
T 3dii_A 2 NRGVIVTGGGHGIGKQICLDFLEAGDKVCFID-------IDEKRSADFAKERPNLFYFHGDVADPLTLKKFVEYAMEKLQ 74 (247)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-------SCHHHHHHHHTTCTTEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEe-------CCHHHHHHHHHhcccCCeEEeeCCCHHHHHHHHHHHHHHcC
Confidence 688999988754 6789999999999876531 12233333333333333322 47888888887765442 2
Q ss_pred CCCcEEEEeC
Q 026235 126 TPNVRIGVVG 135 (241)
Q Consensus 126 ~~~~~i~aIG 135 (241)
.-+.-|.+.|
T Consensus 75 ~id~lv~nAg 84 (247)
T 3dii_A 75 RIDVLVNNAC 84 (247)
T ss_dssp CCCEEEECCC
T ss_pred CCCEEEECCC
Confidence 2234444443
No 377
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}
Probab=38.27 E-value=47 Score=27.68 Aligned_cols=77 Identities=14% Similarity=0.128 Sum_probs=45.2
Q ss_pred cCCCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEE----EeCHHHHHHHH
Q 026235 44 ASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII----ITSPEAGSVFL 118 (241)
Q Consensus 44 ~~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~Ii----FTS~~aV~~f~ 118 (241)
....+.||++|||....+ ...+++.|.+.|++|...-.- ......+.+.+.+...+ .+..+ +++..+++.++
T Consensus 43 ~~~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~ 119 (294)
T 3r3s_A 43 GSGRLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLP--AEEEDAQQVKALIEECG-RKAVLLPGDLSDESFARSLV 119 (294)
T ss_dssp CCSTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCG--GGHHHHHHHHHHHHHTT-CCEEECCCCTTSHHHHHHHH
T ss_pred cccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC--cchhHHHHHHHHHHHcC-CcEEEEEecCCCHHHHHHHH
Confidence 455788999999988754 678999999999987642110 00001122233332221 12222 36788888887
Q ss_pred HHHHh
Q 026235 119 EAWKE 123 (241)
Q Consensus 119 ~~l~~ 123 (241)
+.+.+
T Consensus 120 ~~~~~ 124 (294)
T 3r3s_A 120 HKARE 124 (294)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76544
No 378
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=38.22 E-value=30 Score=24.45 Aligned_cols=38 Identities=18% Similarity=0.126 Sum_probs=27.2
Q ss_pred cccccCCCCCCCeEEEeCCCC-ChHHHHHHHHHCCCcEE
Q 026235 40 DATSASASNSNPKVVVTRERG-KNGKLIKALAKHRIDCL 77 (241)
Q Consensus 40 ~~~~~~~~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~ 77 (241)
+....+.++.|..|.++.... .+..+.+.++++|+.+.
T Consensus 8 ~~~~~~~~l~g~~i~isg~~~~~r~~l~~li~~~Gg~v~ 46 (107)
T 3l3e_A 8 EKEEAPKPLHKVVVCVSKKLSKKQSELNGIAASLGADYR 46 (107)
T ss_dssp ------CTTTTCEEEECGGGGGGHHHHHHHHHHTTCEEE
T ss_pred CcccccCCCCCeEEEEeCCChHhHHHHHHHHHHcCCEEe
Confidence 344567899999999987643 57789999999999875
No 379
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=38.21 E-value=53 Score=26.75 Aligned_cols=74 Identities=14% Similarity=-0.014 Sum_probs=40.4
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCC-Cc----hHHHHHHhcCCCccE--EEEeCHHHHHHHHHHHHhcCCC--CcEEEE
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGP-DT----DRLSSVLNADTIFDW--IIITSPEAGSVFLEAWKEAGTP--NVRIGV 133 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~-~~----~~l~~~l~~l~~~d~--IiFTS~~aV~~f~~~l~~~~~~--~~~i~a 133 (241)
.-+.+.|+++|..- ..++...... +. ..+.+.+....++++ |+..+-...-..++.+.+.++. ++.++.
T Consensus 153 ~Gf~~~l~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~i~~~nD~~A~g~~~al~~~g~~v~di~vvG 230 (306)
T 8abp_A 153 TGSMDALKAAGFPE--KQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIG 230 (306)
T ss_dssp HHHHHHHHHHTCCG--GGEEEEECSSSSHHHHHHHHHHHHTTCTTCSEEEEECSSHHHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred HHHHHHHHhcCCCC--cEEEeeccCCCChHHHHHHHHHHHHhCCCCceEEEEeCCcHHHHHHHHHHHHcCCCCCceEEEE
Confidence 34566777777531 1122222211 11 234555544467787 5555555666677777777764 677777
Q ss_pred eCHHH
Q 026235 134 VGAGT 138 (241)
Q Consensus 134 IG~~T 138 (241)
.+...
T Consensus 231 ~D~~~ 235 (306)
T 8abp_A 231 INGVD 235 (306)
T ss_dssp ESSGG
T ss_pred eCcHH
Confidence 66544
No 380
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}
Probab=38.16 E-value=41 Score=27.61 Aligned_cols=88 Identities=11% Similarity=0.049 Sum_probs=49.4
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEeceEEEee-CC----CchHHHHHHhcC-CCccEEE--EeCHHHHHH
Q 026235 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQ-GP----DTDRLSSVLNAD-TIFDWII--ITSPEAGSV 116 (241)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~-~~----~~~~l~~~l~~l-~~~d~Ii--FTS~~aV~~ 116 (241)
..+.||++|||....+ ...+++.|.++|++|...- +... .. ..+...+.+... ....++. +++..+++.
T Consensus 2 ~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~--r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~ 79 (274)
T 3e03_A 2 LTLSGKTLFITGASRGIGLAIALRAARDGANVAIAA--KSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIREEDQVRA 79 (274)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE--SCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTCHHHHHH
T ss_pred CCCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEe--ccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHH
Confidence 4678999999988754 6678999999999876432 1111 00 012222222211 1111221 378888888
Q ss_pred HHHHHHhc-CCCCcEEEEeC
Q 026235 117 FLEAWKEA-GTPNVRIGVVG 135 (241)
Q Consensus 117 f~~~l~~~-~~~~~~i~aIG 135 (241)
+++.+.+. +.-+.-|.+.|
T Consensus 80 ~~~~~~~~~g~iD~lvnnAG 99 (274)
T 3e03_A 80 AVAATVDTFGGIDILVNNAS 99 (274)
T ss_dssp HHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHcCCCCEEEECCC
Confidence 88776543 32344444444
No 381
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=38.15 E-value=35 Score=27.98 Aligned_cols=84 Identities=13% Similarity=0.063 Sum_probs=54.7
Q ss_pred CCeEEEeCCCCC-------hHHHHHHHHHCCCcEEEeceEEEeeCCCc----hHHHHHHhcCCCccEEEEeCHHHHHHHH
Q 026235 50 NPKVVVTRERGK-------NGKLIKALAKHRIDCLELPLIQHAQGPDT----DRLSSVLNADTIFDWIIITSPEAGSVFL 118 (241)
Q Consensus 50 g~~VLitR~~~~-------~~~l~~~L~~~G~~v~~~P~~~~~~~~~~----~~l~~~l~~l~~~d~IiFTS~~aV~~f~ 118 (241)
.++|++..+... ..-+.+.|+++|.++.... ...+. ..+.+.+....++|+|+..+-.......
T Consensus 130 ~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~ 204 (297)
T 3rot_A 130 AKRALVLNPQPGHIGLEKRAYGIKTILQDKGIFFEELD-----VGTDPNQVQSRVKSYFKIHPETNIIFCLTSQALDPLG 204 (297)
T ss_dssp CCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEE-----CCSCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHH
T ss_pred CceEEEEeCCCCcHHHHHHHHHHHHHHHhcCCeEEEee-----cCCChHHHHHHHHHHHHhCCCCCEEEEcCCcchHHHH
Confidence 456666644322 2446678888898876432 11121 2344555555788999999988878888
Q ss_pred HHHHhcCC----CCcEEEEeCHHH
Q 026235 119 EAWKEAGT----PNVRIGVVGAGT 138 (241)
Q Consensus 119 ~~l~~~~~----~~~~i~aIG~~T 138 (241)
+.+.+.++ .++.++.++...
T Consensus 205 ~al~~~g~~vP~~dv~vig~D~~~ 228 (297)
T 3rot_A 205 QMLLHPDRYDFNYQPQVYSFDKTP 228 (297)
T ss_dssp HHHHSHHHHTCCCCCEEEEECCCH
T ss_pred HHHHhcCCccCCCceEEEEeCCCH
Confidence 88887765 378888887643
No 382
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A
Probab=38.08 E-value=50 Score=28.13 Aligned_cols=159 Identities=16% Similarity=0.136 Sum_probs=85.5
Q ss_pred eEEEeCCCCChHH----HHHHHHHCCCcEEEeceEEEeeCCCchHHHHHH---hcCCCccEEEEeCH--HHH--HHHHHH
Q 026235 52 KVVVTRERGKNGK----LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NADTIFDWIIITSP--EAG--SVFLEA 120 (241)
Q Consensus 52 ~VLitR~~~~~~~----l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l---~~l~~~d~IiFTS~--~aV--~~f~~~ 120 (241)
-|++....+.+.. -.+.+++.|+ ....-+-+ ....+++.+.+ ++....|.|+.--| ..+ +.+.+.
T Consensus 31 avilvg~dpaS~~Yv~~k~k~~~~~Gi-~~~~~lp~---~~s~~ell~~I~~lN~D~~v~GIlvqlPLP~~id~~~v~~~ 106 (276)
T 3ngx_A 31 KLIQIGDNEAASIYARAKIRRGKKIGI-AVDLEKYD---DISMKDLLKRIDDLAKDPQINGIMIENPLPKGFDYYEIVRN 106 (276)
T ss_dssp EEEEESCCHHHHHHHHHHHHHHHHHTC-EEEEEEES---SCCHHHHHHHHHHHHHCTTCCEEEECSCCCTTCCHHHHHTT
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHCCe-EEEEECCC---CCCHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCHHHHHhh
Confidence 3555555443333 3445677798 55433221 11234444444 45578999998776 222 222222
Q ss_pred HH-hcCCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEccC-CCchhHHHHHH
Q 026235 121 WK-EAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASA-KASNEIEEGLS 198 (241)
Q Consensus 121 l~-~~~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~~~~~~iL~~~g~-~~~~~L~~~L~ 198 (241)
+. +...++..-+-+| .|- . |-. .+.| -|+.+.++.|..+...|++++++-.. ....-+...|.
T Consensus 107 I~p~KDVDG~~p~n~G-----~l~-~------g~~-~~~P--cTp~gv~~lL~~~~l~Gk~vvVvG~s~iVG~plA~lL~ 171 (276)
T 3ngx_A 107 IPYYKDVDALSPYNQG-----LIA-L------NRE-FLVP--ATPRAVIDIMDYYGYHENTVTIVNRSPVVGRPLSMMLL 171 (276)
T ss_dssp SCGGGBTTCCSHHHHH-----HHH-T------TCC-SSCC--HHHHHHHHHHHHHTCCSCEEEEECCCTTTHHHHHHHHH
T ss_pred CCCCCcccCCCccchh-----hhh-c------CCC-CCCC--CcHHHHHHHHHHhCcCCCEEEEEcCChHHHHHHHHHHH
Confidence 21 1122344322233 222 2 422 2444 58889998887664678898888643 34566888899
Q ss_pred hCCCeeeEeeeeeeecCCCChHHHHHHcCCCCEEEEECC
Q 026235 199 NRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASP 237 (241)
Q Consensus 199 ~~G~~V~~~~vY~~~~~~~~~~~~~~~l~~id~IvFtSp 237 (241)
+.|++|.-+.-+ . ..+.+.+.+.|+|+-+.+
T Consensus 172 ~~gAtVtv~~~~-----t---~~L~~~~~~ADIVI~Avg 202 (276)
T 3ngx_A 172 NRNYTVSVCHSK-----T---KDIGSMTRSSKIVVVAVG 202 (276)
T ss_dssp HTTCEEEEECTT-----C---SCHHHHHHHSSEEEECSS
T ss_pred HCCCeEEEEeCC-----c---ccHHHhhccCCEEEECCC
Confidence 999988755321 1 112223356787776554
No 383
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=38.07 E-value=1e+02 Score=21.58 Aligned_cols=108 Identities=15% Similarity=0.098 Sum_probs=62.3
Q ss_pred CeEEEeCCCC-ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEe----CHHHHHHHHHHHHhcC
Q 026235 51 PKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAWKEAG 125 (241)
Q Consensus 51 ~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFT----S~~aV~~f~~~l~~~~ 125 (241)
.+||+.-... ....+...|+..|+++... .+..+..+.+.. ..+|.|+.- ..++.+. ...+.+..
T Consensus 4 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~al~~l~~-~~~dlvi~D~~l~~~~g~~~-~~~l~~~~ 73 (138)
T 3c3m_A 4 YTILVVDDSPMIVDVFVTMLERGGYRPITA--------FSGEECLEALNA-TPPDLVLLDIMMEPMDGWET-LERIKTDP 73 (138)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------SSHHHHHHHHHH-SCCSEEEEESCCSSSCHHHH-HHHHHHST
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCceEEEe--------CCHHHHHHHHhc-cCCCEEEEeCCCCCCCHHHH-HHHHHcCc
Confidence 5788887664 3566788888888765421 233333344433 468888863 2345543 44454432
Q ss_pred -CCCcEEEEeCHH--HHHHHHHhhhccCCCCc-eeecCCCCCHHHHHHHhhhC
Q 026235 126 -TPNVRIGVVGAG--TASIFEEVIQSSKCSLD-VAFSPSKATGKILASELPKN 174 (241)
Q Consensus 126 -~~~~~i~aIG~~--Ta~~L~~~~~~~~~Gi~-~~~~p~~~t~e~L~~~l~~~ 174 (241)
..+++++.+... ........ |.. .++..+..+.+.|.+.+...
T Consensus 74 ~~~~~~ii~ls~~~~~~~~~~~~------~~~~~~~l~KP~~~~~L~~~i~~~ 120 (138)
T 3c3m_A 74 ATRDIPVLMLTAKPLTPEEANEY------GSYIEDYILKPTTHHQLYEAIEHV 120 (138)
T ss_dssp TTTTSCEEEEESSCCCHHHHHHT------TTTCSEEEECCCHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCChHHHHHHh------hcCHhheEeCCCCHHHHHHHHHHH
Confidence 245666665322 23334444 532 25777788889998888654
No 384
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=38.06 E-value=27 Score=27.95 Aligned_cols=45 Identities=11% Similarity=0.182 Sum_probs=31.0
Q ss_pred HHHHHhcCC-CccEEEEeCHHHHHHHHHHHHhcCC--CCcEEEEeCHH
Q 026235 93 LSSVLNADT-IFDWIIITSPEAGSVFLEAWKEAGT--PNVRIGVVGAG 137 (241)
Q Consensus 93 l~~~l~~l~-~~d~IiFTS~~aV~~f~~~l~~~~~--~~~~i~aIG~~ 137 (241)
+.+.+..-. .+|+|+..+-.....+.+.+.+.++ +++.++..+..
T Consensus 170 ~~~~l~~~~~~~~ai~~~~d~~a~g~~~al~~~g~vp~di~vvg~d~~ 217 (272)
T 3o74_A 170 MQQLIDDLGGLPDALVTTSYVLLQGVFDTLQARPVDSRQLQLGTFGDN 217 (272)
T ss_dssp HHHHHHHHTSCCSEEEESSHHHHHHHHHHHHTSCGGGCCCEEEEESCC
T ss_pred HHHHHhcCCCCCcEEEEeCchHHHHHHHHHHHcCCCccceEEEEeCCh
Confidence 445554334 6888888887777777787877774 56777777654
No 385
>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*
Probab=37.87 E-value=43 Score=27.96 Aligned_cols=87 Identities=10% Similarity=0.042 Sum_probs=52.0
Q ss_pred CCCCCCCeEEEeCCC---CChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEE--EeCHHHHHHHHH
Q 026235 45 SASNSNPKVVVTRER---GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII--ITSPEAGSVFLE 119 (241)
Q Consensus 45 ~~~l~g~~VLitR~~---~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~Ii--FTS~~aV~~f~~ 119 (241)
...+.||++|||... .-...+++.|.+.|++|...- +.. ...+.+.+.....+...++. +|+..+++.+++
T Consensus 25 ~~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~--r~~--~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~ 100 (296)
T 3k31_A 25 GMLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTY--LSE--TFKKRVDPLAESLGVKLTVPCDVSDAESVDNMFK 100 (296)
T ss_dssp CCTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEE--SSG--GGHHHHHHHHHHHTCCEEEECCTTCHHHHHHHHH
T ss_pred hhccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEe--CCh--HHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHH
Confidence 456889999999986 446789999999999876431 111 11122333332223332222 478889988888
Q ss_pred HHHhc-CCCCcEEEEeC
Q 026235 120 AWKEA-GTPNVRIGVVG 135 (241)
Q Consensus 120 ~l~~~-~~~~~~i~aIG 135 (241)
.+.+. +.-+.-|.+.|
T Consensus 101 ~~~~~~g~iD~lVnnAG 117 (296)
T 3k31_A 101 VLAEEWGSLDFVVHAVA 117 (296)
T ss_dssp HHHHHHSCCSEEEECCC
T ss_pred HHHHHcCCCCEEEECCC
Confidence 76543 32344454444
No 386
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=37.79 E-value=52 Score=27.28 Aligned_cols=53 Identities=9% Similarity=0.065 Sum_probs=37.5
Q ss_pred ccEEEEEccC--CCchhHHHHHHhCCCeeeEeeeeeeecCCCChHHHHHHcCCCCEEEEECC
Q 026235 178 KCTVLYPASA--KASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASP 237 (241)
Q Consensus 178 ~~~iL~~~g~--~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~l~~id~IvFtSp 237 (241)
.++|+++... +....+.+.|++.|+++..+.+|.....+. .+..+|+|+++-.
T Consensus 3 ~~~vliiqh~~~e~~~~i~~~l~~~G~~v~v~~~~~~~~~p~-------~~~~~d~lIl~GG 57 (250)
T 3m3p_A 3 LKPVMIIQFSASEGPGHFGDFLAGEHIPFQVLRMDRSDPLPA-------EIRDCSGLAMMGG 57 (250)
T ss_dssp CCCEEEEESSSSCCCHHHHHHHHHTTCCEEEEEGGGTCCCCS-------CGGGSSEEEECCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHCCCeEEEEeccCCCcCcC-------ccccCCEEEECCC
Confidence 3678888653 456789999999999988888876543321 1246899888744
No 387
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*
Probab=37.74 E-value=41 Score=27.98 Aligned_cols=35 Identities=17% Similarity=0.109 Sum_probs=28.3
Q ss_pred cCCCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEE
Q 026235 44 ASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLE 78 (241)
Q Consensus 44 ~~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~ 78 (241)
....+.||++|||..... ...+++.|.+.|++|..
T Consensus 41 ~~~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~ 76 (291)
T 3ijr_A 41 GSEKLKGKNVLITGGDSGIGRAVSIAFAKEGANIAI 76 (291)
T ss_dssp CCSTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred cccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEE
Confidence 345688999999988754 67899999999998764
No 388
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=37.72 E-value=76 Score=24.86 Aligned_cols=72 Identities=11% Similarity=0.031 Sum_probs=41.1
Q ss_pred CeEEEeCCCCC-hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCC---
Q 026235 51 PKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT--- 126 (241)
Q Consensus 51 ~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~--- 126 (241)
++|+|.--..+ -..+.++|++.|+++..+ .+.++ + ..+|.||+.-+-+-......+...++
T Consensus 3 ~~I~iiD~g~~n~~si~~al~~~G~~~~v~--------~~~~~----l---~~~D~lilPG~g~~~~~~~~~~~~~~i~~ 67 (211)
T 4gud_A 3 QNVVIIDTGCANISSVKFAIERLGYAVTIS--------RDPQV----V---LAADKLFLPGVGTASEAMKNLTERDLIEL 67 (211)
T ss_dssp CCEEEECCCCTTHHHHHHHHHHTTCCEEEE--------CCHHH----H---HHCSEEEECCCSCHHHHHHHHHHTTCHHH
T ss_pred CEEEEEECCCChHHHHHHHHHHCCCEEEEE--------CCHHH----H---hCCCEEEECCCCCHHHHHHHHHhcChHHH
Confidence 46777755443 367899999999998742 23222 2 34799999764332222333333222
Q ss_pred ---CCcEEEEeCHH
Q 026235 127 ---PNVRIGVVGAG 137 (241)
Q Consensus 127 ---~~~~i~aIG~~ 137 (241)
.+++++-|--.
T Consensus 68 ~~~~~~PvlGIClG 81 (211)
T 4gud_A 68 VKRVEKPLLGICLG 81 (211)
T ss_dssp HHHCCSCEEEETHH
T ss_pred HHHcCCCEEEEchh
Confidence 35666555433
No 389
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0
Probab=37.71 E-value=40 Score=27.70 Aligned_cols=35 Identities=14% Similarity=0.049 Sum_probs=28.4
Q ss_pred CCCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEe
Q 026235 45 SASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (241)
Q Consensus 45 ~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (241)
...+.||++|||....+ ...+++.|.+.|++|..+
T Consensus 10 ~~~l~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~ 45 (280)
T 3pgx_A 10 AGSLQGRVAFITGAARGQGRSHAVRLAAEGADIIAC 45 (280)
T ss_dssp -CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred ccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEE
Confidence 45688999999988754 678999999999988754
No 390
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=37.64 E-value=66 Score=26.23 Aligned_cols=73 Identities=14% Similarity=0.031 Sum_probs=41.3
Q ss_pred HHHHHHHCCCcEEEeceEEEeeCCC--chHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCC---CCcEEEEeCHH
Q 026235 65 LIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGAG 137 (241)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~--~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~---~~~~i~aIG~~ 137 (241)
+.+.|+++|..+....++......+ ...+.+.+.....+|+|+.++-...-...+.+.+.++ +++.++..+..
T Consensus 148 f~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~nd~~A~g~~~al~~~G~~vP~di~vig~D~~ 225 (294)
T 3qk7_A 148 YVQTMSEAGLMPLAGYLQKADPTRPGGYLAASRLLALEVPPTAIITDCNMLGDGVASALDKAGLLGGEGISLIAYDGL 225 (294)
T ss_dssp HHHHHHTTTCCCCTTCEEEECSSHHHHHHHHHHHHHSSSCCSEEEESSHHHHHHHHHHHHHTTCSSTTSCEEEEETCS
T ss_pred HHHHHHHCCCCCChhHeecCCCCHHHHHHHHHHHHcCCCCCcEEEECCHHHHHHHHHHHHHcCCCCCCceEEEeecCc
Confidence 4556777776543222222211111 1234555544467788888777766677777777765 36777777654
No 391
>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*
Probab=37.40 E-value=48 Score=27.64 Aligned_cols=90 Identities=11% Similarity=0.044 Sum_probs=50.2
Q ss_pred cccCCCCCCCeEEEeCCCC---ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEE--EeCHHHHHH
Q 026235 42 TSASASNSNPKVVVTRERG---KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII--ITSPEAGSV 116 (241)
Q Consensus 42 ~~~~~~l~g~~VLitR~~~---~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~Ii--FTS~~aV~~ 116 (241)
|.....+.||++|||.... -...+++.|.+.|++|... .+... ..+.+.+.....+...++. +|+..+++.
T Consensus 23 ~~~~~~l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~--~r~~~--~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~ 98 (293)
T 3grk_A 23 TAQSGLLQGKRGLILGVANNRSIAWGIAKAAREAGAELAFT--YQGDA--LKKRVEPLAEELGAFVAGHCDVADAASIDA 98 (293)
T ss_dssp ----CTTTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEE--ECSHH--HHHHHHHHHHHHTCEEEEECCTTCHHHHHH
T ss_pred CcccccCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEE--cCCHH--HHHHHHHHHHhcCCceEEECCCCCHHHHHH
Confidence 3445568999999998753 3678999999999987643 11110 0122222222223322221 478888888
Q ss_pred HHHHHHhc-CCCCcEEEEeC
Q 026235 117 FLEAWKEA-GTPNVRIGVVG 135 (241)
Q Consensus 117 f~~~l~~~-~~~~~~i~aIG 135 (241)
+++.+.+. +.-+.-|.+.|
T Consensus 99 ~~~~~~~~~g~iD~lVnnAG 118 (293)
T 3grk_A 99 VFETLEKKWGKLDFLVHAIG 118 (293)
T ss_dssp HHHHHHHHTSCCSEEEECCC
T ss_pred HHHHHHHhcCCCCEEEECCc
Confidence 88876543 32344454444
No 392
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=37.40 E-value=66 Score=23.04 Aligned_cols=40 Identities=20% Similarity=0.096 Sum_probs=29.1
Q ss_pred CHHHHHHHhhhCCCCccEEEEEccCCCc---hhHHHHHHhCCCe
Q 026235 163 TGKILASELPKNGKKKCTVLYPASAKAS---NEIEEGLSNRGFE 203 (241)
Q Consensus 163 t~e~L~~~l~~~~~~~~~iL~~~g~~~~---~~L~~~L~~~G~~ 203 (241)
..+.|.+.+.+.. ++++|++.|..+.+ ......|++.|++
T Consensus 57 p~~~l~~~~~~l~-~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~ 99 (124)
T 3flh_A 57 PAKDLATRIGELD-PAKTYVVYDWTGGTTLGKTALLVLLSAGFE 99 (124)
T ss_dssp CHHHHHHHGGGSC-TTSEEEEECSSSSCSHHHHHHHHHHHHTCE
T ss_pred CHHHHHHHHhcCC-CCCeEEEEeCCCCchHHHHHHHHHHHcCCe
Confidence 3456666666543 56788888888776 5688899999984
No 393
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}
Probab=37.17 E-value=42 Score=27.06 Aligned_cols=72 Identities=15% Similarity=0.030 Sum_probs=43.1
Q ss_pred CCCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcC-CCccEEE--EeCHHHHHHHHHH
Q 026235 45 SASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD-TIFDWII--ITSPEAGSVFLEA 120 (241)
Q Consensus 45 ~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l-~~~d~Ii--FTS~~aV~~f~~~ 120 (241)
+.++.||++|||..... ...+++.|.++|++|..+- .+.+.+.+....+ ....++. +++...++.+++.
T Consensus 4 ~m~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~-------r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 76 (261)
T 3n74_A 4 SMSLEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVD-------RDKAGAERVAGEIGDAALAVAADISKEADVDAAVEA 76 (261)
T ss_dssp -CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-------SCHHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHH
T ss_pred cccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEc-------CCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHH
Confidence 45678999999998764 6789999999999876431 1222222222222 1222221 3677777777765
Q ss_pred HHh
Q 026235 121 WKE 123 (241)
Q Consensus 121 l~~ 123 (241)
+.+
T Consensus 77 ~~~ 79 (261)
T 3n74_A 77 ALS 79 (261)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 394
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=37.14 E-value=30 Score=28.86 Aligned_cols=31 Identities=13% Similarity=0.054 Sum_probs=0.0
Q ss_pred CCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEE
Q 026235 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCL 77 (241)
Q Consensus 47 ~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~ 77 (241)
+|+||.+|||....+ ...+++.|.+.|++|.
T Consensus 6 ~L~gKvalVTGas~GIG~aia~~la~~Ga~Vv 37 (255)
T 4g81_D 6 DLTGKTALVTGSARGLGFAYAEGLAAAGARVI 37 (255)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEE
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEE
No 395
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=37.07 E-value=1.4e+02 Score=22.95 Aligned_cols=59 Identities=14% Similarity=0.157 Sum_probs=38.5
Q ss_pred CCeEEEeCCCC-ChHHHHHHHHHCCCcEEEec-----------eEEEeeC--CCchHHHHHHhcCCCccEEEEeCH
Q 026235 50 NPKVVVTRERG-KNGKLIKALAKHRIDCLELP-----------LIQHAQG--PDTDRLSSVLNADTIFDWIIITSP 111 (241)
Q Consensus 50 g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P-----------~~~~~~~--~~~~~l~~~l~~l~~~d~IiFTS~ 111 (241)
.|+||||.... -+..+.+.|.+.|.+|..+- -++.... .+.+.+.+.+ .++|.||.+..
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~---~~~d~vi~~a~ 76 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIENEHLKVKKADVSSLDEVCEVC---KGADAVISAFN 76 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCCCTTEEEECCCTTCHHHHHHHH---TTCSEEEECCC
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhccCceEEEEecCCCHHHHHHHh---cCCCEEEEeCc
Confidence 37899998764 36778889999998877652 1222221 2334555555 46899998753
No 396
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=37.01 E-value=61 Score=26.29 Aligned_cols=121 Identities=8% Similarity=0.024 Sum_probs=59.8
Q ss_pred HHHHHHHHCCCcEEEeceEEEeeCCCchH----HHHHHhcCCCccEEEEeCH--HHHHHHHHHHHhcCCCCcEEEEeCHH
Q 026235 64 KLIKALAKHRIDCLELPLIQHAQGPDTDR----LSSVLNADTIFDWIIITSP--EAGSVFLEAWKEAGTPNVRIGVVGAG 137 (241)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~----l~~~l~~l~~~d~IiFTS~--~aV~~f~~~l~~~~~~~~~i~aIG~~ 137 (241)
-+.+.++++|+++..+- . ...+.+. ++..+ . ..+|.||+.+. .........+.+ .++++++++..
T Consensus 25 g~~~~~~~~g~~~~~~~---~-~~~~~~~~~~~~~~l~-~-~~vdgiii~~~~~~~~~~~~~~~~~---~~ipvV~~~~~ 95 (303)
T 3d02_A 25 GVVQAGKEFNLNASQVG---P-SSTDAPQQVKIIEDLI-A-RKVDAITIVPNDANVLEPVFKKARD---AGIVVLTNESP 95 (303)
T ss_dssp HHHHHHHHTTEEEEEEC---C-SSSCHHHHHHHHHHHH-H-TTCSEEEECCSCHHHHHHHHHHHHH---TTCEEEEESCT
T ss_pred HHHHHHHHcCCEEEEEC---C-CCCCHHHHHHHHHHHH-H-cCCCEEEEecCChHHHHHHHHHHHH---CCCeEEEEecC
Confidence 34556778897664321 0 0112222 22333 2 67999998754 333333444443 35889999864
Q ss_pred HHHHHHHhhhccCCCCceeecCCCC-CHHHHHHHhhhCCCCccEEEEEccCCCch-------hHHHHHHhCCCe
Q 026235 138 TASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKASN-------EIEEGLSNRGFE 203 (241)
Q Consensus 138 Ta~~L~~~~~~~~~Gi~~~~~p~~~-t~e~L~~~l~~~~~~~~~iL~~~g~~~~~-------~L~~~L~~~G~~ 203 (241)
. .... ++.. +..+.. .+..+++.|.+......+++++.|..... -+.+.|++.|..
T Consensus 96 ~---~~~~------~~~~-v~~d~~~~g~~a~~~l~~~~g~~~~i~~i~g~~~~~~~~~R~~gf~~~l~~~~~~ 159 (303)
T 3d02_A 96 G---QPSA------NWDV-EIIDNEKFAAEYVEHMAKRMGGKGGYVIYVGSLTVPQHNLWADLLVKYQKEHYPD 159 (303)
T ss_dssp T---CTTC------SEEE-ESSCHHHHHHHHHHHHHHHTTTCEEEEEECSCSSCHHHHHHHHHHHHHHHHHCTT
T ss_pred C---CCCC------ceEE-EecCHHHHHHHHHHHHHHHhCcCceEEEEecCCCCccHHHHHHHHHHHHHhhCCC
Confidence 1 1111 2211 223322 23455666665222113899888764332 245666655433
No 397
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*
Probab=36.93 E-value=49 Score=27.17 Aligned_cols=33 Identities=12% Similarity=0.172 Sum_probs=26.5
Q ss_pred CCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEe
Q 026235 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (241)
Q Consensus 47 ~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (241)
++.||++|||..... ...+++.|.+.|++|..+
T Consensus 19 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~ 52 (277)
T 2rhc_B 19 TQDSEVALVTGATSGIGLEIARRLGKEGLRVFVC 52 (277)
T ss_dssp CTTSCEEEEETCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEE
Confidence 578899999988754 677889999999987643
No 398
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*
Probab=36.92 E-value=91 Score=25.22 Aligned_cols=80 Identities=11% Similarity=0.059 Sum_probs=45.4
Q ss_pred CCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEeceEEEeeCCCc---hHHHHHHhcCCCccEEE----EeCHHHHHHHHHH
Q 026235 49 SNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDT---DRLSSVLNADTIFDWII----ITSPEAGSVFLEA 120 (241)
Q Consensus 49 ~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~---~~l~~~l~~l~~~d~Ii----FTS~~aV~~f~~~ 120 (241)
.||++|||..... ...+++.|.+.|+++...- ..+. +.+.+.+... ..+..+ +|+..+++.+++.
T Consensus 3 ~~k~vlVTGas~gIG~aia~~l~~~G~~vv~~~------~r~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~ 75 (258)
T 3oid_A 3 QNKCALVTGSSRGVGKAAAIRLAENGYNIVINY------ARSKKAALETAEEIEKL-GVKVLVVKANVGQPAKIKEMFQQ 75 (258)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEE------SSCHHHHHHHHHHHHTT-TCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEEEEc------CCCHHHHHHHHHHHHhc-CCcEEEEEcCCCCHHHHHHHHHH
Confidence 4789999988754 6778999999999876421 1111 2222233222 223332 3677888887776
Q ss_pred HHhc-CCCCcEEEEeC
Q 026235 121 WKEA-GTPNVRIGVVG 135 (241)
Q Consensus 121 l~~~-~~~~~~i~aIG 135 (241)
+.+. +.-+.-|.+.|
T Consensus 76 ~~~~~g~id~lv~nAg 91 (258)
T 3oid_A 76 IDETFGRLDVFVNNAA 91 (258)
T ss_dssp HHHHHSCCCEEEECCC
T ss_pred HHHHcCCCCEEEECCC
Confidence 6442 22234444443
No 399
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}
Probab=36.66 E-value=38 Score=27.50 Aligned_cols=85 Identities=9% Similarity=0.073 Sum_probs=48.9
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEE----EeCHHHHHHHHHH
Q 026235 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII----ITSPEAGSVFLEA 120 (241)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~Ii----FTS~~aV~~f~~~ 120 (241)
..+.||++|||....+ ...+++.|.+.|++|... .+.. ...+++.+.+...+ .+..+ +++..+++.+++.
T Consensus 2 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~--~r~~--~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~ 76 (257)
T 3imf_A 2 NAMKEKVVIITGGSSGMGKGMATRFAKEGARVVIT--GRTK--EKLEEAKLEIEQFP-GQILTVQMDVRNTDDIQKMIEQ 76 (257)
T ss_dssp CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEE--ESCH--HHHHHHHHHHCCST-TCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEE--eCCH--HHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHH
Confidence 3578999999988754 678899999999987642 1110 01122233332211 12222 3688888888876
Q ss_pred HHhc-CCCCcEEEEeC
Q 026235 121 WKEA-GTPNVRIGVVG 135 (241)
Q Consensus 121 l~~~-~~~~~~i~aIG 135 (241)
+.+. +.-+.-|.+.|
T Consensus 77 ~~~~~g~id~lv~nAg 92 (257)
T 3imf_A 77 IDEKFGRIDILINNAA 92 (257)
T ss_dssp HHHHHSCCCEEEECCC
T ss_pred HHHHcCCCCEEEECCC
Confidence 6542 32344455555
No 400
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0
Probab=36.66 E-value=46 Score=27.43 Aligned_cols=86 Identities=12% Similarity=0.127 Sum_probs=49.3
Q ss_pred CCCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCC-CccEEE--EeCHHHHHHHHHH
Q 026235 45 SASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT-IFDWII--ITSPEAGSVFLEA 120 (241)
Q Consensus 45 ~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~-~~d~Ii--FTS~~aV~~f~~~ 120 (241)
..++.||++|||....+ ...+++.|.+.|++|...- +. +..+++.+.+...+ ...++. +++..+++.+.+.
T Consensus 26 ~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~--r~---~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 100 (273)
T 3uf0_A 26 PFSLAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWG--RT---DGVKEVADEIADGGGSAEAVVADLADLEGAANVAEE 100 (273)
T ss_dssp TTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE--SS---THHHHHHHHHHTTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEc--CH---HHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHH
Confidence 35688999999988754 6789999999999876432 11 11222333332211 122221 3677888887666
Q ss_pred HHhcCCCCcEEEEeC
Q 026235 121 WKEAGTPNVRIGVVG 135 (241)
Q Consensus 121 l~~~~~~~~~i~aIG 135 (241)
+.+.+.-+.-|.+.|
T Consensus 101 ~~~~g~iD~lv~nAg 115 (273)
T 3uf0_A 101 LAATRRVDVLVNNAG 115 (273)
T ss_dssp HHHHSCCCEEEECCC
T ss_pred HHhcCCCcEEEECCC
Confidence 655433334444433
No 401
>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} SCOP: c.23.5.4 PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A*
Probab=36.62 E-value=9.3 Score=29.44 Aligned_cols=75 Identities=15% Similarity=0.086 Sum_probs=39.7
Q ss_pred CChHHHHHHHHH-CCCcEEEeceEEEeeCC-C-----chHHHHHHhcCCCccEEEEeCH-------HHHHHHHHHHHhcC
Q 026235 60 GKNGKLIKALAK-HRIDCLELPLIQHAQGP-D-----TDRLSSVLNADTIFDWIIITSP-------EAGSVFLEAWKEAG 125 (241)
Q Consensus 60 ~~~~~l~~~L~~-~G~~v~~~P~~~~~~~~-~-----~~~l~~~l~~l~~~d~IiFTS~-------~aV~~f~~~l~~~~ 125 (241)
.....+.+.+.+ .+.+...+-.+.+.... + .+.+....+.+..+|.|||.|| ..++.|++.+....
T Consensus 14 g~t~~la~~i~~~l~~~~i~l~~~~lp~~~~~~~~~~~~~~~~~~~~i~~aD~ii~~tP~y~~~~p~~lk~~lD~l~~~~ 93 (174)
T 3gfs_A 14 GRTRIAASYIAALYHTDLIDLSEFVLPVFNGEAEQSELLKVQELKQRVTKADAIVLLSPEYHSGMSGALKNALDFLSSEQ 93 (174)
T ss_dssp CHHHHHHHHHHHHTTCEEEETTTSCCCCCCCCHHHHTCHHHHHHHHHHHHCSSEEEEEECSSSSCCHHHHHHHHTCCHHH
T ss_pred CcHHHHHHHHHHhCcceEEeeecCCCCCCCChhhccCcHHHHHHHHHHHHCCEEEEEcCCcCCCCCHHHHHHHHHhCHhh
Confidence 345666666543 34444443222221111 1 2334455555678999999987 56777777553322
Q ss_pred CCCcEEEEe
Q 026235 126 TPNVRIGVV 134 (241)
Q Consensus 126 ~~~~~i~aI 134 (241)
+.+++++.+
T Consensus 94 ~~gK~~~~~ 102 (174)
T 3gfs_A 94 FKYKPVALL 102 (174)
T ss_dssp HTTCEEEEE
T ss_pred hCCCcEEEE
Confidence 345555554
No 402
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=36.62 E-value=47 Score=26.71 Aligned_cols=86 Identities=12% Similarity=0.023 Sum_probs=55.3
Q ss_pred CCeEEEeCCCCC-----hHHHHHHHHHCCCcEEEeceEEEeeCCCc----hHHHHHHhcCCCccEEEEeCHHHHHHHHHH
Q 026235 50 NPKVVVTRERGK-----NGKLIKALAKHRIDCLELPLIQHAQGPDT----DRLSSVLNADTIFDWIIITSPEAGSVFLEA 120 (241)
Q Consensus 50 g~~VLitR~~~~-----~~~l~~~L~~~G~~v~~~P~~~~~~~~~~----~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~ 120 (241)
.++|.+..+... ..-+.+.|+++|..+...- +. ...+. +.+.+.+..-..+|+|+.++-.....+.+.
T Consensus 118 ~~~i~~i~~~~~~~~~R~~gf~~~l~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~a 194 (280)
T 3gyb_A 118 HTHIAHLRVGSGAGLRRFESFEATMRAHGLEPLSND-YL--GPAVEHAGYTETLALLKEHPEVTAIFSSNDITAIGALGA 194 (280)
T ss_dssp CCSEEEECCSSHHHHHHHHHHHHHHHHTTCCCEECC-CC--SCCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHH
T ss_pred CCeEEEEeCCCchHHHHHHHHHHHHHHcCcCCCccc-cc--CCCCHHHHHHHHHHHHhCCCCCCEEEECChHHHHHHHHH
Confidence 356776665432 2345667888887766432 11 11121 234555655567899999998888888888
Q ss_pred HHhcCC---CCcEEEEeCHHH
Q 026235 121 WKEAGT---PNVRIGVVGAGT 138 (241)
Q Consensus 121 l~~~~~---~~~~i~aIG~~T 138 (241)
+.+.++ .++.++..+..-
T Consensus 195 l~~~g~~vP~di~vvg~d~~~ 215 (280)
T 3gyb_A 195 ARELGLRVPEDLSIIGYDNTP 215 (280)
T ss_dssp HHHHTCCTTTTCEEEEESCCH
T ss_pred HHHcCCCCCCeeEEEEECCch
Confidence 888876 378888887644
No 403
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=36.57 E-value=32 Score=27.13 Aligned_cols=49 Identities=10% Similarity=0.072 Sum_probs=32.7
Q ss_pred hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcC-CCccEEEEeCHHHH
Q 026235 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD-TIFDWIIITSPEAG 114 (241)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l-~~~d~IiFTS~~aV 114 (241)
...+.+.|++.|+++....++ + ++.+.+.+.+... ..+|.||.|-..++
T Consensus 25 ~~~l~~~L~~~G~~v~~~~iv---~-Dd~~~I~~~l~~a~~~~DlVittGG~g~ 74 (172)
T 3kbq_A 25 AAFIGNFLTYHGYQVRRGFVV---M-DDLDEIGWAFRVALEVSDLVVSSGGLGP 74 (172)
T ss_dssp HHHHHHHHHHTTCEEEEEEEE---C-SCHHHHHHHHHHHHHHCSEEEEESCCSS
T ss_pred HHHHHHHHHHCCCEEEEEEEe---C-CCHHHHHHHHHHHHhcCCEEEEcCCCcC
Confidence 456889999999988765433 2 4455666655432 45899998865543
No 404
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*
Probab=36.55 E-value=35 Score=28.68 Aligned_cols=70 Identities=11% Similarity=0.159 Sum_probs=43.0
Q ss_pred ccccCCCCCCCeEEEeCCCC-ChHHHHHHHHHCCCcEEEece--------------EEEee--CCCchHHHHHHhcCCCc
Q 026235 41 ATSASASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPL--------------IQHAQ--GPDTDRLSSVLNADTIF 103 (241)
Q Consensus 41 ~~~~~~~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~--------------~~~~~--~~~~~~l~~~l~~l~~~ 103 (241)
+.....++.||+||||.... -+..+.+.|.+.|++|..+-- ++... +.+.+.+.+.++.. .+
T Consensus 11 ~~~~~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~~~~~-~~ 89 (330)
T 2pzm_A 11 SSGLVPRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLERAFDSF-KP 89 (330)
T ss_dssp ---CCSTTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHHHHHH-CC
T ss_pred ccCCcccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhhhccCCceEEEeeCCCHHHHHHHHhhc-CC
Confidence 34456678899999998865 367788889889988875421 11111 12334455555322 68
Q ss_pred cEEEEeCH
Q 026235 104 DWIIITSP 111 (241)
Q Consensus 104 d~IiFTS~ 111 (241)
|.||.+..
T Consensus 90 D~vih~A~ 97 (330)
T 2pzm_A 90 THVVHSAA 97 (330)
T ss_dssp SEEEECCC
T ss_pred CEEEECCc
Confidence 88888653
No 405
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}
Probab=36.44 E-value=45 Score=27.58 Aligned_cols=36 Identities=14% Similarity=0.031 Sum_probs=28.4
Q ss_pred cCCCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEe
Q 026235 44 ASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (241)
Q Consensus 44 ~~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (241)
.+..+.||++|||....+ ...+++.|.+.|++|...
T Consensus 21 ~~~~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~ 57 (277)
T 4dqx_A 21 QSMDLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVA 57 (277)
T ss_dssp -CCTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred ccCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEE
Confidence 445678999999988754 678999999999987643
No 406
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=36.38 E-value=1e+02 Score=21.07 Aligned_cols=107 Identities=8% Similarity=0.044 Sum_probs=62.9
Q ss_pred CCeEEEeCCCC-ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEe----CHHHHHHHHHHHHhc
Q 026235 50 NPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAWKEA 124 (241)
Q Consensus 50 g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFT----S~~aV~~f~~~l~~~ 124 (241)
+.+||+.-... ....+...|+..|+++... .+..+..+.+.. ..+|.|+.- ..++.+ +...+.+.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~--------~~~~~~~~~~~~-~~~dlvi~D~~l~~~~g~~-~~~~l~~~ 72 (126)
T 1dbw_A 3 DYTVHIVDDEEPVRKSLAFMLTMNGFAVKMH--------QSAEAFLAFAPD-VRNGVLVTDLRMPDMSGVE-LLRNLGDL 72 (126)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHTTCEEEEE--------SCHHHHHHHGGG-CCSEEEEEECCSTTSCHHH-HHHHHHHT
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCcEEEEe--------CCHHHHHHHHhc-CCCCEEEEECCCCCCCHHH-HHHHHHhc
Confidence 46788887654 3566788888888765422 233334444433 467877753 234544 34445443
Q ss_pred CCCCcEEEEeCH-HH---HHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhC
Q 026235 125 GTPNVRIGVVGA-GT---ASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (241)
Q Consensus 125 ~~~~~~i~aIG~-~T---a~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~ 174 (241)
. ++++++.+.. .. ...+.+. |.. ++..+..+.+.|.+.+...
T Consensus 73 ~-~~~~ii~~s~~~~~~~~~~~~~~------ga~-~~l~Kp~~~~~l~~~i~~~ 118 (126)
T 1dbw_A 73 K-INIPSIVITGHGDVPMAVEAMKA------GAV-DFIEKPFEDTVIIEAIERA 118 (126)
T ss_dssp T-CCCCEEEEECTTCHHHHHHHHHT------TCS-EEEESSCCHHHHHHHHHHH
T ss_pred C-CCCCEEEEECCCCHHHHHHHHHh------CHH-HheeCCCCHHHHHHHHHHH
Confidence 2 4566665533 22 2333345 765 5777788999999888653
No 407
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*
Probab=36.36 E-value=46 Score=26.83 Aligned_cols=33 Identities=12% Similarity=0.076 Sum_probs=27.0
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEE
Q 026235 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLE 78 (241)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~ 78 (241)
..+.||++|||....+ ...+++.|.++|++|..
T Consensus 2 ~~l~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~ 35 (247)
T 3rwb_A 2 ERLAGKTALVTGAAQGIGKAIAARLAADGATVIV 35 (247)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred CCcCCCEEEEECCCCHHHHHHHHHHHHCCCEEEE
Confidence 3578999999988654 67899999999998764
No 408
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*
Probab=36.33 E-value=50 Score=26.29 Aligned_cols=34 Identities=12% Similarity=0.035 Sum_probs=27.2
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEe
Q 026235 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (241)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (241)
.++.|++||||..... ...+++.|.+.|++|..+
T Consensus 7 ~~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~ 41 (254)
T 2wsb_A 7 FRLDGACAAVTGAGSGIGLEICRAFAASGARLILI 41 (254)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEE
Confidence 4577899999988754 678899999999987654
No 409
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Probab=36.30 E-value=35 Score=27.25 Aligned_cols=34 Identities=6% Similarity=0.007 Sum_probs=26.8
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEe
Q 026235 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (241)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (241)
.++.|++||||..... ...+.+.|.+.|++|..+
T Consensus 7 ~~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~ 41 (255)
T 1fmc_A 7 LRLDGKCAIITGAGAGIGKEIAITFATAGASVVVS 41 (255)
T ss_dssp GCCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEE
T ss_pred CCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEE
Confidence 4578899999988654 667888999999887643
No 410
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Probab=36.24 E-value=1.1e+02 Score=25.63 Aligned_cols=32 Identities=19% Similarity=0.211 Sum_probs=25.3
Q ss_pred CCCCeEEEeCCCC-ChHHHHHHHHHCCCcEEEe
Q 026235 48 NSNPKVVVTRERG-KNGKLIKALAKHRIDCLEL 79 (241)
Q Consensus 48 l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~ 79 (241)
+.+++||||.... -+..+.+.|.+.|.+|..+
T Consensus 25 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~ 57 (352)
T 1sb8_A 25 AQPKVWLITGVAGFIGSNLLETLLKLDQKVVGL 57 (352)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHHCCCEEEEE
Confidence 5578999998865 3677888888889888764
No 411
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Probab=36.09 E-value=2e+02 Score=27.71 Aligned_cols=90 Identities=16% Similarity=0.163 Sum_probs=55.0
Q ss_pred CCCCCCeEEEeCCCC-----ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHh--cCCCccEEEEeCHHH-----
Q 026235 46 ASNSNPKVVVTRERG-----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN--ADTIFDWIIITSPEA----- 113 (241)
Q Consensus 46 ~~l~g~~VLitR~~~-----~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~--~l~~~d~IiFTS~~a----- 113 (241)
..+.|++|.|.-... .-..+.+.|++.|++|..+-.-.-.. .| ..+. ....||+|++.....
T Consensus 533 ~~l~grKVaILvadG~fE~~El~~p~~aL~~aGa~V~vVsp~~g~G-vD-----~t~~~~~s~~fDAVvlPGG~~~~~~~ 606 (688)
T 3ej6_A 533 PTIATLRVGVLSTTKGGSLDKAKALKEQLEKDGLKVTVIAEYLASG-VD-----QTYSAADATAFDAVVVAEGAERVFSG 606 (688)
T ss_dssp SCCTTCEEEEECCSSSSHHHHHHHHHHHHHHTTCEEEEEESSCCTT-CC-----EETTTCCGGGCSEEEECTTCCTTTST
T ss_pred CCccCCEEEEEccCCCccHHHHHHHHHHHHHCCCEEEEEeCCCCCC-cc-----cCcccCChhcCcEEEECCCccccccc
Confidence 458899998886654 12345689999999998763311010 11 1121 125799999976621
Q ss_pred ------------HHHHHHHHHhcCCCCcEEEEeCHHHHHHHHHh
Q 026235 114 ------------GSVFLEAWKEAGTPNVRIGVVGAGTASIFEEV 145 (241)
Q Consensus 114 ------------V~~f~~~l~~~~~~~~~i~aIG~~Ta~~L~~~ 145 (241)
+..|.....+ .++.|++||.+ ...|.+.
T Consensus 607 ~~~~d~Lr~~~~a~~fV~e~~~---hgKpIAAIchg-p~lL~~A 646 (688)
T 3ej6_A 607 KGAMSPLFPAGRPSQILTDGYR---WGKPVAAVGSA-KKALQSI 646 (688)
T ss_dssp TTTCCTTSCTTHHHHHHHHHHH---TTCCEEEEGGG-HHHHHHT
T ss_pred ccchhhhccCHHHHHHHHHHHH---cCCEEEEeCcc-HHHHHHc
Confidence 2233332222 35789999976 5788888
No 412
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}
Probab=36.04 E-value=43 Score=27.03 Aligned_cols=34 Identities=18% Similarity=0.193 Sum_probs=27.2
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEe
Q 026235 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (241)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (241)
..+.||++|||..... ...+++.|.++|++|..+
T Consensus 3 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~ 37 (257)
T 3tpc_A 3 MQLKSRVFIVTGASSGLGAAVTRMLAQEGATVLGL 37 (257)
T ss_dssp -CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred cccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEE
Confidence 3578999999988754 678999999999987643
No 413
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=36.02 E-value=36 Score=28.74 Aligned_cols=75 Identities=12% Similarity=0.132 Sum_probs=45.9
Q ss_pred CCCeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHH---H----HHHHHHHH
Q 026235 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE---A----GSVFLEAW 121 (241)
Q Consensus 49 ~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~---a----V~~f~~~l 121 (241)
.|.+|+++.+......+...++..|+++..+|+.......+.+.+.+.+.. .+...|++++++ | ++.+.+.+
T Consensus 85 ~gd~vlv~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~-~~~~~v~~~~~~nptG~~~~l~~i~~~~ 163 (385)
T 2bkw_A 85 PNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQ-NSYGAVTVTHVDTSTAVLSDLKAISQAI 163 (385)
T ss_dssp SCCEEEEECSSHHHHHHHHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHH-SCCSEEEEESEETTTTEECCHHHHHHHH
T ss_pred CCCeEEEEcCCcchHHHHHHHHHcCCceEEEecCCCCCCCCHHHHHHHHhc-CCCCEEEEEccCCCcCeEcCHHHHHHHH
Confidence 577888886543333344677888999998886211111245667776643 356788888765 3 45555555
Q ss_pred Hhc
Q 026235 122 KEA 124 (241)
Q Consensus 122 ~~~ 124 (241)
++.
T Consensus 164 ~~~ 166 (385)
T 2bkw_A 164 KQT 166 (385)
T ss_dssp HHH
T ss_pred Hhh
Confidence 554
No 414
>3l7o_A Ribose-5-phosphate isomerase A; RPIA; 1.70A {Streptococcus mutans}
Probab=35.94 E-value=85 Score=25.77 Aligned_cols=53 Identities=9% Similarity=-0.034 Sum_probs=44.0
Q ss_pred HHhcCCCccEEEEeCHHHHHHHHHHHHhc----CCCCcEEEEeCHHHHHHHHHhhhccCCCCce
Q 026235 96 VLNADTIFDWIIITSPEAGSVFLEAWKEA----GTPNVRIGVVGAGTASIFEEVIQSSKCSLDV 155 (241)
Q Consensus 96 ~l~~l~~~d~IiFTS~~aV~~f~~~l~~~----~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~ 155 (241)
+.+...+-+.|..-|.+.+.+|.+.+.+. + .++.+++=+..|++.++++ |+++
T Consensus 12 A~~~V~dg~vIgLGsGST~~~~i~~L~~~~~~~~-~~i~~VttS~~t~~~l~~~------Gi~l 68 (225)
T 3l7o_A 12 AAQYVEDGMIVGLGTGSTAYYFVEEVGRRVQEEG-LQVIGVTTSSRTTAQAQAL------GIPL 68 (225)
T ss_dssp HHTTCCTTCEEEECCSTTHHHHHHHHHHHHHHHC-CCCEEEESSHHHHHHHHHH------TCCB
T ss_pred HHHhCCCCCEEEECCcHHHHHHHHHHHHhhhhcC-CCEEEEcCCHHHHHHHhcc------CceE
Confidence 44456788999999999999999988764 2 3688899999999999999 9875
No 415
>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=35.94 E-value=13 Score=34.21 Aligned_cols=140 Identities=13% Similarity=0.046 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHH-HhcCCCCcEEEEeC-HH
Q 026235 60 GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAW-KEAGTPNVRIGVVG-AG 137 (241)
Q Consensus 60 ~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l-~~~~~~~~~i~aIG-~~ 137 (241)
..-.++.+.|++.|+++.....-.... +.+..++..+.-+..++.......+.+ ++.+.+-+..--+| ..
T Consensus 216 gd~~eik~lL~~~Gi~v~~~~~gg~~~--------~el~~~~~A~~niv~~~~~~~~~A~~Le~~~GiP~i~~~p~Gi~~ 287 (483)
T 3pdi_A 216 GEFWHVLPLLDELGLRVLCTLAGDARY--------REVQTMHRAEVNMMVCSKAMLNVARKLQETYGTPWFEGSFYGITD 287 (483)
T ss_dssp TGGGGTHHHHHHHTEEEEEEETSSBCH--------HHHTTGGGCSEEEEESCCTTHHHHHHHHHHHCCCEEEECSSSHHH
T ss_pred hHHHHHHHHHHHCCCcEEEECCCcCCH--------HHHHhhhcCCEEEEEchhhHHHHHHHHHHHhCCCEeecCCCCHHH
Q ss_pred HHHHHHHhhhccCCCCc-------eeecCCCCCHHHHHHHhhhCCCCccEEEEEccCCCchhHHHHHHhCCCeeeEeeee
Q 026235 138 TASIFEEVIQSSKCSLD-------VAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTY 210 (241)
Q Consensus 138 Ta~~L~~~~~~~~~Gi~-------~~~~p~~~t~e~L~~~l~~~~~~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~~~vY 210 (241)
|.+.|++. ..++|.. ..+..+.......++...+.. .|+|+++..+....-.+...|.+.|.+|..+-.|
T Consensus 288 T~~~L~~i--a~~~g~~~i~~~~e~~i~~er~~~~~al~~~~~~l-~GKrv~i~~~~~~~~~l~~~L~ElGmevv~~gt~ 364 (483)
T 3pdi_A 288 TSQALRDF--ARLLDDPDLTARTEALIAREEAKVRAALEPWRARL-EGKRVLLYTGGVKSWSVVSALQDLGMKVVATGTK 364 (483)
T ss_dssp HHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCEEEEECSSSCHHHHHHHHHHHTCEEEEECBS
T ss_pred HHHHHHHH--HHHhCCcchhhhHHHHHHHHHHHHHHHHHHHHHHh-cCCEEEEECCCchHHHHHHHHHHCCCEEEEEecC
No 416
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=35.89 E-value=1.5e+02 Score=23.50 Aligned_cols=93 Identities=13% Similarity=0.070 Sum_probs=55.3
Q ss_pred eCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHHHHH-----HhhhccCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEE
Q 026235 109 TSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE-----EVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLY 183 (241)
Q Consensus 109 TS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~L~-----~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~~~~~~iL~ 183 (241)
.|+..++..-+.....++.++.+. .|... .+. .. .+...+.-...+.+.+++.+.+...+|..+++
T Consensus 102 ~s~~~~~~a~~~~~~~~~~~v~~~-~~d~~--~~~~~~~~~~------~fD~V~~~~~~~~~~~l~~~~~~LkpgG~l~~ 172 (240)
T 1xdz_A 102 SLNKRITFLEKLSEALQLENTTFC-HDRAE--TFGQRKDVRE------SYDIVTARAVARLSVLSELCLPLVKKNGLFVA 172 (240)
T ss_dssp SCHHHHHHHHHHHHHHTCSSEEEE-ESCHH--HHTTCTTTTT------CEEEEEEECCSCHHHHHHHHGGGEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHcCCCCEEEE-eccHH--HhcccccccC------CccEEEEeccCCHHHHHHHHHHhcCCCCEEEE
Confidence 356666666555555555554443 44432 221 11 23443333345678888888777666788888
Q ss_pred EccCCCch---hHHHHHHhCCCeeeEeeee
Q 026235 184 PASAKASN---EIEEGLSNRGFEVVRLNTY 210 (241)
Q Consensus 184 ~~g~~~~~---~L~~~L~~~G~~V~~~~vY 210 (241)
..|....+ .+.+.+++.|+.+.+..-|
T Consensus 173 ~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~ 202 (240)
T 1xdz_A 173 LKAASAEEELNAGKKAITTLGGELENIHSF 202 (240)
T ss_dssp EECC-CHHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred EeCCCchHHHHHHHHHHHHcCCeEeEEEEE
Confidence 87765444 3666788899888776655
No 417
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=35.87 E-value=1e+02 Score=24.98 Aligned_cols=92 Identities=11% Similarity=0.025 Sum_probs=56.7
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEeCHHHHHHHHH-----hhhccCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEE
Q 026235 110 SPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEE-----VIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYP 184 (241)
Q Consensus 110 S~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~L~~-----~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~~~~~~iL~~ 184 (241)
|+..++..-+.....++.++.+. .|.. +.+.. . .++..+.-...+.+.+++.+.....+|.++++.
T Consensus 113 s~~~~~~a~~~~~~~~l~~v~~~-~~d~--~~~~~~~~~~~------~fD~I~s~a~~~~~~ll~~~~~~LkpgG~l~~~ 183 (249)
T 3g89_A 113 TRKKVAFVERAIEVLGLKGARAL-WGRA--EVLAREAGHRE------AYARAVARAVAPLCVLSELLLPFLEVGGAAVAM 183 (249)
T ss_dssp CHHHHHHHHHHHHHHTCSSEEEE-ECCH--HHHTTSTTTTT------CEEEEEEESSCCHHHHHHHHGGGEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHhCCCceEEE-ECcH--HHhhcccccCC------CceEEEECCcCCHHHHHHHHHHHcCCCeEEEEE
Confidence 56666666666655566555443 3433 22211 1 234333323456678888887776677899988
Q ss_pred ccCCCch---hHHHHHHhCCCeeeEeeee
Q 026235 185 ASAKASN---EIEEGLSNRGFEVVRLNTY 210 (241)
Q Consensus 185 ~g~~~~~---~L~~~L~~~G~~V~~~~vY 210 (241)
.|....+ .+.+.++..|+.+.++.-|
T Consensus 184 ~g~~~~~e~~~~~~~l~~~G~~~~~~~~~ 212 (249)
T 3g89_A 184 KGPRVEEELAPLPPALERLGGRLGEVLAL 212 (249)
T ss_dssp ECSCCHHHHTTHHHHHHHHTEEEEEEEEE
T ss_pred eCCCcHHHHHHHHHHHHHcCCeEEEEEEe
Confidence 8865443 4667788889998887777
No 418
>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2
Probab=35.81 E-value=42 Score=27.10 Aligned_cols=33 Identities=6% Similarity=0.014 Sum_probs=26.4
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEE
Q 026235 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLE 78 (241)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~ 78 (241)
.++.|++||||..... ...+.+.|.++|+++..
T Consensus 17 ~~~~~k~vlItGasggiG~~la~~l~~~G~~v~~ 50 (274)
T 1ja9_A 17 KPLAGKVALTTGAGRGIGRGIAIELGRRGASVVV 50 (274)
T ss_dssp CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEE
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEE
Confidence 4577899999988754 67789999999988764
No 419
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E
Probab=35.74 E-value=47 Score=26.81 Aligned_cols=33 Identities=12% Similarity=0.101 Sum_probs=27.3
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEE
Q 026235 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLE 78 (241)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~ 78 (241)
..+.||++|||....+ ...+++.|.+.|++|..
T Consensus 5 ~~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~ 38 (248)
T 3op4_A 5 MNLEGKVALVTGASRGIGKAIAELLAERGAKVIG 38 (248)
T ss_dssp TCCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEE
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEE
Confidence 4578999999988754 67899999999998764
No 420
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=35.71 E-value=31 Score=27.98 Aligned_cols=44 Identities=16% Similarity=0.097 Sum_probs=29.8
Q ss_pred HHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCH
Q 026235 93 LSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGA 136 (241)
Q Consensus 93 l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~ 136 (241)
+.+.+.....+|+|+..+-.....+.+.+.+.++.++.++..+.
T Consensus 182 ~~~ll~~~~~~~ai~~~~d~~a~g~~~al~~~g~~dv~vig~d~ 225 (290)
T 2fn9_A 182 TEQILQAHPEIKAIWCGNDAMALGAMKACEAAGRTDIYIFGFDG 225 (290)
T ss_dssp HHHHHHHCTTCCEEEESSHHHHHHHHHHHHHTTCTTCEEECCBC
T ss_pred HHHHHHhCCCCcEEEECCchHHHHHHHHHHHCCCCCeEEEEeCC
Confidence 44555444568888888877666777777777765666666654
No 421
>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*
Probab=35.71 E-value=58 Score=26.72 Aligned_cols=33 Identities=15% Similarity=0.122 Sum_probs=26.8
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEE
Q 026235 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLE 78 (241)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~ 78 (241)
..+.||++|||..... ...+++.|.+.|++|..
T Consensus 25 ~~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~ 58 (283)
T 1g0o_A 25 ASLEGKVALVTGAGRGIGREMAMELGRRGCKVIV 58 (283)
T ss_dssp GCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEE
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEE
Confidence 4578999999988754 57789999999998764
No 422
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=35.69 E-value=35 Score=26.44 Aligned_cols=10 Identities=40% Similarity=0.328 Sum_probs=5.2
Q ss_pred CCCEEEEECC
Q 026235 228 SIPVVAVASP 237 (241)
Q Consensus 228 ~id~IvFtSp 237 (241)
..|.|+|-||
T Consensus 52 ~aD~ii~gsP 61 (188)
T 2ark_A 52 WADGLAVGSP 61 (188)
T ss_dssp HCSEEEEEEE
T ss_pred hCCEEEEEeC
Confidence 3455555554
No 423
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=35.49 E-value=2e+02 Score=24.80 Aligned_cols=104 Identities=13% Similarity=0.070 Sum_probs=58.7
Q ss_pred CeEEEeCCCC-ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEe----CHHHHHHHHHHHHhcC
Q 026235 51 PKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAWKEAG 125 (241)
Q Consensus 51 ~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFT----S~~aV~~f~~~l~~~~ 125 (241)
++|||.-... -...+...|++.|+++... .+..+..+.+.. ..+|.|+.= -.+|.+.+-. +.+..
T Consensus 1 ~~ILiVDDd~~~~~~l~~~L~~~g~~v~~a--------~~~~eal~~l~~-~~~DlvllDi~mP~~dG~ell~~-lr~~~ 70 (368)
T 3dzd_A 1 KRVLVVDDEESITSSLSAILEEEGYHPDTA--------KTLREAEKKIKE-LFFPVIVLDVWMPDGDGVNFIDF-IKENS 70 (368)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------SSHHHHHHHHHH-BCCSEEEEESEETTEETTTHHHH-HHHHC
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEE--------CCHHHHHHHHHh-CCCCEEEEeCCCCCCCHHHHHHH-HHhhC
Confidence 4688887654 3566788889999876421 233333344432 567876652 2344443332 33322
Q ss_pred CCCcEEEEeC-H---HHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhh
Q 026235 126 TPNVRIGVVG-A---GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (241)
Q Consensus 126 ~~~~~i~aIG-~---~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~ 172 (241)
++++++.+. . .++..+.+. |.. ++..+..+.+.|...+.
T Consensus 71 -~~~pvI~lT~~~~~~~~~~a~~~------Ga~-~yl~KP~~~~~L~~~i~ 113 (368)
T 3dzd_A 71 -PDSVVIVITGHGSVDTAVKAIKK------GAY-EFLEKPFSVERFLLTIK 113 (368)
T ss_dssp -TTCEEEEEECSSCCHHHHHHHHH------TCC-EEEESSCCHHHHHHHHH
T ss_pred -CCCeEEEEeCCCCHHHHHHHHhc------Ccc-eEEeCCCCHHHHHHHHH
Confidence 455665543 2 334444555 765 57777788888877664
No 424
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=35.48 E-value=42 Score=27.24 Aligned_cols=74 Identities=15% Similarity=0.123 Sum_probs=44.5
Q ss_pred CCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCC-CccEEE--EeCHHHHHHHHHHHH
Q 026235 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT-IFDWII--ITSPEAGSVFLEAWK 122 (241)
Q Consensus 47 ~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~-~~d~Ii--FTS~~aV~~f~~~l~ 122 (241)
++.||++|||....+ ...+++.|.+.|++|...- + .....+.+.+.+...+ ...++. +|+..+++.+++.+.
T Consensus 4 ~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~--r--~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 79 (252)
T 3h7a_A 4 TPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGR--R--NGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAAD 79 (252)
T ss_dssp -CCSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEE--S--SGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEe--C--CHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHH
Confidence 567899999988754 6789999999999876431 1 1111233333332221 122222 378888888887765
Q ss_pred hc
Q 026235 123 EA 124 (241)
Q Consensus 123 ~~ 124 (241)
+.
T Consensus 80 ~~ 81 (252)
T 3h7a_A 80 AH 81 (252)
T ss_dssp HH
T ss_pred hh
Confidence 54
No 425
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0
Probab=35.43 E-value=45 Score=27.33 Aligned_cols=35 Identities=17% Similarity=0.024 Sum_probs=27.9
Q ss_pred CCCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEe
Q 026235 45 SASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (241)
Q Consensus 45 ~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (241)
...+.||++|||..... ...+++.|.+.|++|...
T Consensus 5 m~~l~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~ 40 (281)
T 3s55_A 5 MADFEGKTALITGGARGMGRSHAVALAEAGADIAIC 40 (281)
T ss_dssp -CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred ccccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEE
Confidence 45688999999988754 678999999999987653
No 426
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=35.43 E-value=1.3e+02 Score=23.74 Aligned_cols=60 Identities=13% Similarity=0.118 Sum_probs=39.4
Q ss_pred ccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhh
Q 026235 103 FDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (241)
Q Consensus 103 ~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~ 173 (241)
.+...++|...++.....+.+ ++..++.=|..|.+.++++ |++..+. ..+.+++.++|.+
T Consensus 120 i~~~~~~~~~e~~~~i~~l~~---~G~~vvVG~~~~~~~A~~~------Gl~~vli--~sg~eSI~~Ai~e 179 (196)
T 2q5c_A 120 IKEFLFSSEDEITTLISKVKT---ENIKIVVSGKTVTDEAIKQ------GLYGETI--NSGEESLRRAIEE 179 (196)
T ss_dssp EEEEEECSGGGHHHHHHHHHH---TTCCEEEECHHHHHHHHHT------TCEEEEC--CCCHHHHHHHHHH
T ss_pred eEEEEeCCHHHHHHHHHHHHH---CCCeEEECCHHHHHHHHHc------CCcEEEE--ecCHHHHHHHHHH
Confidence 445566666666666665555 3567776677888888888 9987554 2446777766653
No 427
>3u7i_A FMN-dependent NADH-azoreductase 1; structural genomics, the center for structural genomics of I diseases, csgid, oxidoreductase; HET: MSE; 1.75A {Bacillus anthracis}
Probab=35.42 E-value=41 Score=27.26 Aligned_cols=59 Identities=14% Similarity=0.105 Sum_probs=36.0
Q ss_pred EEEEEccCCC---c--------hhHHHHHHhC--CC-eeeEeeeeeeecCCCCh--------------------------
Q 026235 180 TVLYPASAKA---S--------NEIEEGLSNR--GF-EVVRLNTYTTEPVHHVD-------------------------- 219 (241)
Q Consensus 180 ~iL~~~g~~~---~--------~~L~~~L~~~--G~-~V~~~~vY~~~~~~~~~-------------------------- 219 (241)
+||++.|.-. . +.+.+.|++. |. +|..+.+|+...+....
T Consensus 6 kIL~I~gSpr~~~~~S~s~~L~~~~~~~l~~~~~~~~ev~~idL~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 85 (223)
T 3u7i_A 6 KTLIINAHPKVDDTSSVSIKVFKHFLESYKELISNNETIEQINLYDDVVPMIDKTVLSAWEKQGNGQELTREEQKVTERM 85 (223)
T ss_dssp EEEEEECCTTTTCTTSHHHHHHHHHHHHHHHHCCSSCEEEEEETTTSCCCCCCHHHHHHHHHHTTTCCCCHHHHHHHHHH
T ss_pred EEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhCCCCCeEEEEECcCCCCCCCCHHHHHHhhccccccccCHHHHHHHHHH
Confidence 6777777643 1 2455566654 57 88999888753322110
Q ss_pred HHHHHHcCCCCEEEEECCc
Q 026235 220 QTVLKQALSIPVVAVASPS 238 (241)
Q Consensus 220 ~~~~~~l~~id~IvFtSps 238 (241)
.++.+.+...|+|||.+|.
T Consensus 86 ~~l~~~~~~aD~iv~~~P~ 104 (223)
T 3u7i_A 86 SEILQQFKSANTYVIVLPL 104 (223)
T ss_dssp HHHHHHHHHCSEEEEEEEC
T ss_pred HHHHHHHHhCCEEEEEcCh
Confidence 1123334689999999984
No 428
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=35.41 E-value=56 Score=28.78 Aligned_cols=75 Identities=15% Similarity=0.085 Sum_probs=44.1
Q ss_pred CCeEEEeCCCCChHHHHHHHHHCCCcEEEeceEE------------EeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHH
Q 026235 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQ------------HAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVF 117 (241)
Q Consensus 50 g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~------------~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f 117 (241)
.++|||.........+...++++|+++..+-... ..+..|.+.+.+.++. ..+|+|+..+-.....+
T Consensus 19 ~~~ili~g~g~~g~~~~~a~~~~G~~v~~v~~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~-~~~d~V~~~~e~~~~~~ 97 (433)
T 2dwc_A 19 AQKILLLGSGELGKEIAIEAQRLGVEVVAVDRYANAPAMQVAHRSYVGNMMDKDFLWSVVER-EKPDAIIPEIEAINLDA 97 (433)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHTTCEEEEEESSTTCHHHHHSSEEEESCTTCHHHHHHHHHH-HCCSEEEECSSCSCHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCChhhhhcceEEECCCCCHHHHHHHHHH-cCCCEEEECcccCCHHH
Confidence 4789999765446788899999999987653210 1111233444444422 47899988664332234
Q ss_pred HHHHHhcC
Q 026235 118 LEAWKEAG 125 (241)
Q Consensus 118 ~~~l~~~~ 125 (241)
...+...+
T Consensus 98 ~~~l~~~g 105 (433)
T 2dwc_A 98 LFEFEKDG 105 (433)
T ss_dssp HHHHHHTT
T ss_pred HHHHHhcC
Confidence 44454443
No 429
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=35.18 E-value=58 Score=26.31 Aligned_cols=87 Identities=16% Similarity=0.076 Sum_probs=54.5
Q ss_pred CCCCeEEEeCCCCC-------hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHH
Q 026235 48 NSNPKVVVTRERGK-------NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEA 120 (241)
Q Consensus 48 l~g~~VLitR~~~~-------~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~ 120 (241)
.-.++|.+..+... ..-+.+.|+++|.++... ++.... +.+.+.+.+.....+|+|+.++-...-...+.
T Consensus 120 ~G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~-~~~~~~--~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~a 196 (277)
T 3hs3_A 120 KKIEKVLIQHWPLSLPTIRERIEAMTAEASKLKIDYLLE-ETPENN--PYISAQSALNKSNQFDAIITVNDLYAAEIIKE 196 (277)
T ss_dssp TTCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEE-ECCSSC--HHHHHHHHHHTGGGCSEEECSSHHHHHHHHHH
T ss_pred hCCCEEEEEeCCCcCccHHHHHHHHHHHHHHCCCCCCCC-CccCCc--hHHHHHHHHcCCCCCCEEEECCHHHHHHHHHH
Confidence 33466776644322 234566788899877654 222111 13445566654467899998888877788888
Q ss_pred HHhcCC---CCcEEEEeCHH
Q 026235 121 WKEAGT---PNVRIGVVGAG 137 (241)
Q Consensus 121 l~~~~~---~~~~i~aIG~~ 137 (241)
+.+.++ +++.++..+..
T Consensus 197 l~~~g~~vP~di~vig~d~~ 216 (277)
T 3hs3_A 197 AKRRNLKIPDDFQLVGYDNN 216 (277)
T ss_dssp HHHTTCCTTTTCEEECSBCC
T ss_pred HHHcCCCCCCceEEEeeCCc
Confidence 888876 36777666644
No 430
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A
Probab=35.13 E-value=47 Score=27.24 Aligned_cols=71 Identities=11% Similarity=0.064 Sum_probs=44.5
Q ss_pred CCCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEE----EeCHHHHHHHHH
Q 026235 45 SASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII----ITSPEAGSVFLE 119 (241)
Q Consensus 45 ~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~Ii----FTS~~aV~~f~~ 119 (241)
...+.||++|||..... ...+++.|.+.|+.|...- .+.+.+.+....++ .+..+ +|+..+++.+++
T Consensus 22 m~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~-------r~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~ 93 (266)
T 3grp_A 22 MFKLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHG-------TREDKLKEIAADLG-KDVFVFSANLSDRKSIKQLAE 93 (266)
T ss_dssp TTCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE-------SCHHHHHHHHHHHC-SSEEEEECCTTSHHHHHHHHH
T ss_pred hhccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEe-------CCHHHHHHHHHHhC-CceEEEEeecCCHHHHHHHHH
Confidence 45688999999988754 6789999999999875431 12223333332222 12222 367888888777
Q ss_pred HHHh
Q 026235 120 AWKE 123 (241)
Q Consensus 120 ~l~~ 123 (241)
.+.+
T Consensus 94 ~~~~ 97 (266)
T 3grp_A 94 VAER 97 (266)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6544
No 431
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=35.00 E-value=62 Score=28.26 Aligned_cols=53 Identities=8% Similarity=0.036 Sum_probs=31.5
Q ss_pred ccEEEEEccCCC------chhHHHHHHhCCCeeeEeeeeeeecCCCChH---HHHHHc--CCCCEEE
Q 026235 178 KCTVLYPASAKA------SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQ---TVLKQA--LSIPVVA 233 (241)
Q Consensus 178 ~~~iL~~~g~~~------~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~---~~~~~l--~~id~Iv 233 (241)
+++++++.+... .+.+.+.|++.|+++. +|.-.......+ +..+.+ .++|+|+
T Consensus 40 g~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~---~~~~~~~~p~~~~v~~~~~~~~~~~~d~II 103 (371)
T 1o2d_A 40 GKRALVVTGKSSSKKNGSLDDLKKLLDETEISYE---IFDEVEENPSFDNVMKAVERYRNDSFDFVV 103 (371)
T ss_dssp CSEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEE---EEEEECSSCBHHHHHHHHHHHTTSCCSEEE
T ss_pred CCEEEEEECchHHhhccHHHHHHHHHHHcCCeEE---EeCCccCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 378999987632 2567788888887653 444333333233 223333 4788876
No 432
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=34.99 E-value=53 Score=26.96 Aligned_cols=76 Identities=13% Similarity=0.088 Sum_probs=46.7
Q ss_pred HHHHHHHHHCCCcEEEeceEEEeeCCC--chHHHHH-----HhcCCCccEEEEeCHHHHHHHHHHHHhcCC---CCcEEE
Q 026235 63 GKLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSV-----LNADTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIG 132 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~--~~~l~~~-----l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~---~~~~i~ 132 (241)
.-+.+.|+++|..+....++......+ ...+.+. +.....+|+|+.++-...-.+++.+.+.++ +++.++
T Consensus 151 ~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~ai~~~nd~~A~g~~~al~~~G~~vP~di~vi 230 (303)
T 3kke_A 151 EGYLETLASAGLRSEAAWVVDAGWEADAGSAALNTLYRGANLGKPDGPTAVVVASVNAAVGALSTALRLGLRVPEDLSIV 230 (303)
T ss_dssp HHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHHHHCTTSTTSCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHHHHcCCCCCcceEEecCCChHHHHHHHHHhcchhhhcCCCCCcEEEECCHHHHHHHHHHHHHcCCCCCCceEEE
Confidence 335567888887654322222111111 1234555 544467899998888877777888888776 378888
Q ss_pred EeCHHH
Q 026235 133 VVGAGT 138 (241)
Q Consensus 133 aIG~~T 138 (241)
..+...
T Consensus 231 g~D~~~ 236 (303)
T 3kke_A 231 GINTTW 236 (303)
T ss_dssp EESCCH
T ss_pred EEcChh
Confidence 887653
No 433
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2
Probab=34.98 E-value=44 Score=26.64 Aligned_cols=73 Identities=14% Similarity=0.134 Sum_probs=41.9
Q ss_pred CCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCC-CccEEE--EeCHHHHHHHHHHHH
Q 026235 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT-IFDWII--ITSPEAGSVFLEAWK 122 (241)
Q Consensus 47 ~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~-~~d~Ii--FTS~~aV~~f~~~l~ 122 (241)
++.||++|||..... ...+++.|.++|+++...- +. ....+.+.+.+...+ ...++. ++...+++.+++.+.
T Consensus 2 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~--r~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 77 (247)
T 3lyl_A 2 SLNEKVALVTGASRGIGFEVAHALASKGATVVGTA--TS--QASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIK 77 (247)
T ss_dssp TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEE--SS--HHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEe--CC--HHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHH
Confidence 467899999988754 6778999999999875431 10 001122222232211 222221 367777877777665
Q ss_pred h
Q 026235 123 E 123 (241)
Q Consensus 123 ~ 123 (241)
+
T Consensus 78 ~ 78 (247)
T 3lyl_A 78 A 78 (247)
T ss_dssp H
T ss_pred H
Confidence 4
No 434
>1lk5_A D-ribose-5-phosphate isomerase; alpha/beta structure; 1.75A {Pyrococcus horikoshii} SCOP: c.124.1.4 d.58.40.1 PDB: 1lk7_A*
Probab=34.98 E-value=1.3e+02 Score=24.69 Aligned_cols=50 Identities=10% Similarity=-0.102 Sum_probs=41.1
Q ss_pred HHhcCCCccEEEEeCHHHHHHHHHHHHhc----CCCCcEEEEeCHHHHHHHHHh
Q 026235 96 VLNADTIFDWIIITSPEAGSVFLEAWKEA----GTPNVRIGVVGAGTASIFEEV 145 (241)
Q Consensus 96 ~l~~l~~~d~IiFTS~~aV~~f~~~l~~~----~~~~~~i~aIG~~Ta~~L~~~ 145 (241)
+.+.+.+-+.|.+-|.+.+.++.+.+.+. ++.++.+++=+..++..|.+.
T Consensus 14 Aa~~I~dg~~I~LdsGST~~~~a~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~ 67 (229)
T 1lk5_A 14 ALKFIEDDMVIGLGTGSTTAYFIKLLGEKLKRGEISDIVGVPTSYQAKLLAIEH 67 (229)
T ss_dssp HGGGCCTTCEEEECCSHHHHHHHHHHHHHHHTTSSCSCEEEESSHHHHHHHHHT
T ss_pred HHHhCCCCCEEEEcChHHHHHHHHHHhhhhhhccCCCEEEECCcHHHHHHHHhC
Confidence 44456788999999999999999999653 232688999999999999887
No 435
>2h1q_A Hypothetical protein; ZP_00559375.1, structural genomics, PSI-2, protein structure initiative; 2.01A {Desulfitobacterium hafniense dcb-2} PDB: 3l5o_A
Probab=34.97 E-value=48 Score=28.06 Aligned_cols=111 Identities=17% Similarity=0.043 Sum_probs=69.6
Q ss_pred CCCCeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCC--c-hHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhc
Q 026235 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPD--T-DRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA 124 (241)
Q Consensus 48 l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~--~-~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~ 124 (241)
..|++|.+..-.+ .+.+.+ +.++++.. ++..|... . +..... +...|+|+.|...=+..-++.+-+.
T Consensus 139 ~~g~kV~vIG~~P---~i~~~l-~~~~~v~V---~d~~p~~g~~p~~~~e~l---l~~aD~viiTGsTlvN~Ti~~lL~~ 208 (270)
T 2h1q_A 139 VKGKKVGVVGHFP---HLESLL-EPICDLSI---LEWSPEEGDYPLPASEFI---LPECDYVYITCASVVDKTLPRLLEL 208 (270)
T ss_dssp TTTSEEEEESCCT---THHHHH-TTTSEEEE---EESSCCTTCEEGGGHHHH---GGGCSEEEEETHHHHHTCHHHHHHH
T ss_pred cCCCEEEEECCCH---HHHHHH-hCCCCEEE---EECCCCCCCCChHHHHHH---hhcCCEEEEEeeeeecCCHHHHHHh
Confidence 3689999998763 344455 34655543 33333221 1 223332 4789999999999888777666554
Q ss_pred CCCCcEEEEeCHHHHHH--HHHhhhccCCCCceeecCCCCCHHHHHHHhhhC
Q 026235 125 GTPNVRIGVVGAGTASI--FEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (241)
Q Consensus 125 ~~~~~~i~aIG~~Ta~~--L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~ 174 (241)
......++.+||.|.-. |-++ |++..---..-+.+.+++.+.+-
T Consensus 209 ~~~a~~vvl~GPS~p~~P~lf~~------Gv~~l~G~~V~D~~~~~~~i~~G 254 (270)
T 2h1q_A 209 SRNARRITLVGPGTPLAPVLFEH------GLQELSGFMVKDNARAFRIVAGA 254 (270)
T ss_dssp TTTSSEEEEESTTCCCCGGGGGT------TCSEEEEEEESCHHHHHHHHTTS
T ss_pred CccCCeEEEEecChhhhHHHHhc------CcCEEEEeEecCHHHHHHHHHcC
Confidence 43456899999986322 3344 88763322346889999888754
No 436
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=34.94 E-value=57 Score=26.49 Aligned_cols=74 Identities=9% Similarity=0.029 Sum_probs=43.2
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcC-CCccEEE--EeCHHHHHHHHHHH
Q 026235 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD-TIFDWII--ITSPEAGSVFLEAW 121 (241)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l-~~~d~Ii--FTS~~aV~~f~~~l 121 (241)
..+.||++|||..... ...+++.|.+.|++|...- +.. ...+.+.+.+... ....++. +++..+++.+++.+
T Consensus 7 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~--r~~--~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 82 (264)
T 3ucx_A 7 GLLTDKVVVISGVGPALGTTLARRCAEQGADLVLAA--RTV--ERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDET 82 (264)
T ss_dssp CTTTTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEE--SCH--HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCcCCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEe--CCH--HHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 4578999999988754 6789999999999876431 100 0112222222221 1222221 36778888777765
Q ss_pred Hh
Q 026235 122 KE 123 (241)
Q Consensus 122 ~~ 123 (241)
.+
T Consensus 83 ~~ 84 (264)
T 3ucx_A 83 MK 84 (264)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 437
>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}
Probab=34.84 E-value=41 Score=27.98 Aligned_cols=33 Identities=18% Similarity=0.108 Sum_probs=27.3
Q ss_pred CCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEe
Q 026235 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (241)
Q Consensus 47 ~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (241)
+|+||.+|||....+ ...+++.|.+.|++|...
T Consensus 6 ~L~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~ 39 (247)
T 4hp8_A 6 SLEGRKALVTGANTGLGQAIAVGLAAAGAEVVCA 39 (247)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEE
Confidence 588999999988754 677899999999998754
No 438
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=34.74 E-value=37 Score=26.67 Aligned_cols=46 Identities=20% Similarity=0.038 Sum_probs=31.9
Q ss_pred HHHHHHhhhCCCCccEEEEEccC--CCchhHHHHHHhCCCeeeEeeee
Q 026235 165 KILASELPKNGKKKCTVLYPASA--KASNEIEEGLSNRGFEVVRLNTY 210 (241)
Q Consensus 165 e~L~~~l~~~~~~~~~iL~~~g~--~~~~~L~~~L~~~G~~V~~~~vY 210 (241)
+.+++.+.+...+|..+++.... .....+.+.|++.|+.+..+..+
T Consensus 159 ~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 206 (230)
T 3evz_A 159 VKLLEEAFDHLNPGGKVALYLPDKEKLLNVIKERGIKLGYSVKDIKFK 206 (230)
T ss_dssp HHHHHHHGGGEEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred HHHHHHHHHHhCCCeEEEEEecccHhHHHHHHHHHHHcCCceEEEEec
Confidence 55666666665566777764432 34567889999999988777654
No 439
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0
Probab=34.74 E-value=48 Score=27.17 Aligned_cols=72 Identities=11% Similarity=0.040 Sum_probs=43.8
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEE--EeCHHHHHHHHHHHH
Q 026235 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII--ITSPEAGSVFLEAWK 122 (241)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~Ii--FTS~~aV~~f~~~l~ 122 (241)
..+.||++|||..... ...+++.|.++|++|...- . .....+.+.+.+. ....++. +++..+++.+++.+.
T Consensus 7 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~---r-~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~ 80 (271)
T 3tzq_B 7 AELENKVAIITGACGGIGLETSRVLARAGARVVLAD---L-PETDLAGAAASVG--RGAVHHVVDLTNEVSVRALIDFTI 80 (271)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE---C-TTSCHHHHHHHHC--TTCEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEc---C-CHHHHHHHHHHhC--CCeEEEECCCCCHHHHHHHHHHHH
Confidence 4678999999998754 6789999999999876431 1 1111222222221 1222222 367888888877654
Q ss_pred h
Q 026235 123 E 123 (241)
Q Consensus 123 ~ 123 (241)
+
T Consensus 81 ~ 81 (271)
T 3tzq_B 81 D 81 (271)
T ss_dssp H
T ss_pred H
Confidence 4
No 440
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Probab=34.58 E-value=48 Score=26.90 Aligned_cols=71 Identities=10% Similarity=0.031 Sum_probs=43.3
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcC-CCccEEE--EeCHHHHHHHHHHH
Q 026235 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD-TIFDWII--ITSPEAGSVFLEAW 121 (241)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l-~~~d~Ii--FTS~~aV~~f~~~l 121 (241)
..+.||++|||....+ ...+++.|.+.|++|...- .+.+.+.+..+.+ ....++. +++..+++.+++.+
T Consensus 4 ~~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~-------r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 76 (255)
T 4eso_A 4 GNYQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTG-------RNESNIARIREEFGPRVHALRSDIADLNEIAVLGAAA 76 (255)
T ss_dssp CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEE-------SCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEe-------CCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHH
Confidence 3578999999988754 6789999999999876431 1222222222221 1122221 46788888877765
Q ss_pred Hh
Q 026235 122 KE 123 (241)
Q Consensus 122 ~~ 123 (241)
.+
T Consensus 77 ~~ 78 (255)
T 4eso_A 77 GQ 78 (255)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 441
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*
Probab=34.56 E-value=50 Score=27.14 Aligned_cols=34 Identities=15% Similarity=0.081 Sum_probs=28.2
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEe
Q 026235 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (241)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (241)
..+.||++|||....+ ...+++.|.+.|++|..+
T Consensus 7 ~~l~~k~~lVTGas~gIG~aia~~la~~G~~V~~~ 41 (286)
T 3uve_A 7 GRVEGKVAFVTGAARGQGRSHAVRLAQEGADIIAV 41 (286)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEE
Confidence 4578999999988754 678999999999998754
No 442
>1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex, riken structural genomics/proteomi initiative, RSGI, structural genomics; HET: A5P; 1.74A {Thermus thermophilus} SCOP: c.124.1.4 d.58.40.1 PDB: 1uj5_A* 1uj4_A*
Probab=34.40 E-value=1.2e+02 Score=24.67 Aligned_cols=54 Identities=4% Similarity=-0.148 Sum_probs=42.6
Q ss_pred HHhcCCCccEEEEeCHHHHHHHHHHHHhc----CCCCcEEEEeCHHHHHHHHHhhhccCCCCce
Q 026235 96 VLNADTIFDWIIITSPEAGSVFLEAWKEA----GTPNVRIGVVGAGTASIFEEVIQSSKCSLDV 155 (241)
Q Consensus 96 ~l~~l~~~d~IiFTS~~aV~~f~~~l~~~----~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~ 155 (241)
+.+.+.+-+.|.+-|.+.+.++.+.+.+. +++++++++=+..++..|.+. |+++
T Consensus 16 Aa~~I~dg~~I~LgsGST~~~~~~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~------gi~v 73 (227)
T 1uj6_A 16 AIAYVQDGMVVGLGTGSTARYAVLELARRLREGELKGVVGVPTSRATEELAKRE------GIPL 73 (227)
T ss_dssp HHTTCCTTCEEEECCSHHHHHHHHHHHHHHHTTSSCSCEEEESSHHHHHHHHHT------TCCB
T ss_pred HHHHCCCCCEEEEcCCHHHHHHHHHHhhhhhhcCCCCEEEECCcHHHHHHHHhC------CCeE
Confidence 34456788999999999999999998654 223388999999999999877 7654
No 443
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=34.34 E-value=25 Score=29.42 Aligned_cols=73 Identities=14% Similarity=0.046 Sum_probs=45.0
Q ss_pred CeEEEeCCCCC----hHHH----HHHHHHCCCcEEEeceEEEee--CC-----------------------------Cch
Q 026235 51 PKVVVTRERGK----NGKL----IKALAKHRIDCLELPLIQHAQ--GP-----------------------------DTD 91 (241)
Q Consensus 51 ~~VLitR~~~~----~~~l----~~~L~~~G~~v~~~P~~~~~~--~~-----------------------------~~~ 91 (241)
|+||+.-.... +..+ .+.+++.|.+|..+.+++... .- ..+
T Consensus 3 mkiLiI~gSpr~~s~t~~la~~~~~~l~~~g~eV~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 82 (273)
T 1d4a_A 3 RRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLYAMNFNPIISRKDITGKLKDPANFQYPAESVLAYKEGHLSP 82 (273)
T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEETTTTTCCCCCCGGGBCSCCSSTTSCCHHHHHHHHHHHTCBCH
T ss_pred CEEEEEEeCCCCccHHHHHHHHHHHHHHhCCCeEEEEEccccCCCCcCCHHHHHhhccCcccccchhhhhhhhhcccCcH
Confidence 56666543322 3334 444667799988877776431 00 012
Q ss_pred HHHHHHhcCCCccEEEEeCH-------HHHHHHHHHHHh
Q 026235 92 RLSSVLNADTIFDWIIITSP-------EAGSVFLEAWKE 123 (241)
Q Consensus 92 ~l~~~l~~l~~~d~IiFTS~-------~aV~~f~~~l~~ 123 (241)
.+....+.+..+|.|||.+| ..++.|++.+..
T Consensus 83 d~~~~~~~l~~AD~IV~~~P~y~~s~Pa~LK~~iDrv~~ 121 (273)
T 1d4a_A 83 DIVAEQKKLEAADLVIFQFPLQWFGVPAILKGWFERVFI 121 (273)
T ss_dssp HHHHHHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhCCEEEEECchhhccCCHHHHHHHHHHHh
Confidence 44455445678999999885 788999988743
No 444
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}
Probab=34.29 E-value=47 Score=26.36 Aligned_cols=33 Identities=9% Similarity=-0.002 Sum_probs=25.6
Q ss_pred CCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEe
Q 026235 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (241)
Q Consensus 47 ~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (241)
++.|++||||..... ...+++.|.++|++|..+
T Consensus 2 ~l~~~~vlItGasggiG~~~a~~l~~~G~~V~~~ 35 (247)
T 2hq1_A 2 QLKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLN 35 (247)
T ss_dssp TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 367899999988653 667888899999887643
No 445
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=34.23 E-value=1.2e+02 Score=21.46 Aligned_cols=110 Identities=12% Similarity=0.080 Sum_probs=61.7
Q ss_pred CCeEEEeCCCC-ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcC------CCccEEEEe----CHHHHHHHH
Q 026235 50 NPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD------TIFDWIIIT----SPEAGSVFL 118 (241)
Q Consensus 50 g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l------~~~d~IiFT----S~~aV~~f~ 118 (241)
..+||+.-... ....+...|++.|.... +....+..+..+.+... ..+|.|+.- ..++.+. .
T Consensus 8 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~------v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~lp~~~g~~l-~ 80 (149)
T 1i3c_A 8 PKVILLVEDSKADSRLVQEVLKTSTIDHE------LIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREV-L 80 (149)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHSCCSCEE------EEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHH-H
T ss_pred CCeEEEEECCHHHHHHHHHHHHhcCCCcc------EEEeCCHHHHHHHHHhccccccCCCCCEEEEeCCCCCCcHHHH-H
Confidence 46788887764 35567778888776322 11123333333444321 368888763 2345544 4
Q ss_pred HHHHhcC-CCCcEEEEe-CHH---HHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhh
Q 026235 119 EAWKEAG-TPNVRIGVV-GAG---TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (241)
Q Consensus 119 ~~l~~~~-~~~~~i~aI-G~~---Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~ 173 (241)
..+.+.. .++++++.+ |.. ....+.+. |.. ++..+..+.+.|.+.+..
T Consensus 81 ~~l~~~~~~~~~piiils~~~~~~~~~~~~~~------ga~-~~l~KP~~~~~L~~~i~~ 133 (149)
T 1i3c_A 81 AEIKQNPDLKRIPVVVLTTSHNEDDVIASYEL------HVN-CYLTKSRNLKDLFKMVQG 133 (149)
T ss_dssp HHHHHCTTTTTSCEEEEESCCCHHHHHHHHHT------TCS-EEEECCSSHHHHHHHHHH
T ss_pred HHHHhCcCcCCCeEEEEECCCChHHHHHHHHc------CCc-EEEECCCCHHHHHHHHHH
Confidence 4455432 245666555 322 23333445 765 577788899999888754
No 446
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*
Probab=34.12 E-value=53 Score=26.56 Aligned_cols=33 Identities=15% Similarity=0.112 Sum_probs=26.4
Q ss_pred CCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEe
Q 026235 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (241)
Q Consensus 47 ~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (241)
.+.||++|||..... ...+++.|.++|++|...
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~ 37 (263)
T 3ai3_A 4 GISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLV 37 (263)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 467899999988654 678899999999987643
No 447
>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}
Probab=34.10 E-value=48 Score=26.51 Aligned_cols=33 Identities=15% Similarity=0.012 Sum_probs=26.8
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEE
Q 026235 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLE 78 (241)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~ 78 (241)
.-+.||++|||....+ ...+++.|.+.|+.+..
T Consensus 3 ~~l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~ 36 (255)
T 3icc_A 3 SMLKGKVALVTGASRGIGRAIAKRLANDGALVAI 36 (255)
T ss_dssp CTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEE
T ss_pred CccCCCEEEEECCCChHHHHHHHHHHHCCCeEEE
Confidence 3477999999988754 67899999999987754
No 448
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A
Probab=34.08 E-value=50 Score=26.76 Aligned_cols=34 Identities=6% Similarity=0.008 Sum_probs=27.2
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEe
Q 026235 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (241)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (241)
..+.||++|||..... ...+++.|.++|++|...
T Consensus 4 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~ 38 (259)
T 4e6p_A 4 KRLEGKSALITGSARGIGRAFAEAYVREGATVAIA 38 (259)
T ss_dssp CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred ccCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEE
Confidence 3578999999988754 678899999999987643
No 449
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2
Probab=33.98 E-value=51 Score=26.65 Aligned_cols=33 Identities=15% Similarity=0.026 Sum_probs=26.6
Q ss_pred CCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEe
Q 026235 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (241)
Q Consensus 47 ~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (241)
.+.||++|||..... ...+++.|.+.|++|...
T Consensus 3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~ 36 (256)
T 2d1y_A 3 LFAGKGVLVTGGARGIGRAIAQAFAREGALVALC 36 (256)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEE
Confidence 467899999988754 678899999999987643
No 450
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=33.72 E-value=1.1e+02 Score=21.83 Aligned_cols=52 Identities=12% Similarity=0.185 Sum_probs=30.5
Q ss_pred ccEEEEEccCCCc------hhHHHHHHhCCCeeeEeeeeeeecCCCChHHHHHHcCCCCEEEEECC
Q 026235 178 KCTVLYPASAKAS------NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASP 237 (241)
Q Consensus 178 ~~~iL~~~g~~~~------~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~l~~id~IvFtSp 237 (241)
.++++++||.+-. ..|.+.+++.|+++ ++..+.....+. .+.++|.|+-|.+
T Consensus 21 ~kkIlvvC~sG~gTS~ll~~kl~~~~~~~gi~~-~V~~~~~~~~~~-------~~~~~DlIist~~ 78 (113)
T 1tvm_A 21 KRKIIVACGGAVATSTMAAEEIKELCQSHNIPV-ELIQCRVNEIET-------YMDGVHLICTTAR 78 (113)
T ss_dssp SEEEEEESCSCSSHHHHHHHHHHHHHHHTTCCE-EEEEECTTTTTT-------STTSCSEEEESSC
T ss_pred ccEEEEECCCCHHHHHHHHHHHHHHHHHcCCeE-EEEEecHHHHhh-------ccCCCCEEEECCc
Confidence 3689999998744 34567777888763 333332222111 1246887776654
No 451
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=33.71 E-value=89 Score=22.73 Aligned_cols=14 Identities=21% Similarity=0.309 Sum_probs=7.5
Q ss_pred CCCCHHHHHHHhhh
Q 026235 160 SKATGKILASELPK 173 (241)
Q Consensus 160 ~~~t~e~L~~~l~~ 173 (241)
...+.+.+++.|.+
T Consensus 11 ~tGnT~~~A~~ia~ 24 (148)
T 3f6r_A 11 STGNTESIAQKLEE 24 (148)
T ss_dssp SSSHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHH
Confidence 34455666666543
No 452
>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A
Probab=33.69 E-value=48 Score=26.35 Aligned_cols=32 Identities=3% Similarity=-0.034 Sum_probs=25.9
Q ss_pred CCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEE
Q 026235 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLE 78 (241)
Q Consensus 47 ~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~ 78 (241)
.+.|++||||..... ...+++.|.++|++|..
T Consensus 3 ~~~~k~vlVtGasggiG~~~a~~l~~~G~~V~~ 35 (251)
T 1zk4_A 3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMI 35 (251)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEE
T ss_pred CCCCcEEEEeCCCChHHHHHHHHHHHCCCEEEE
Confidence 467899999988754 67788999999998764
No 453
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}
Probab=33.68 E-value=48 Score=27.43 Aligned_cols=34 Identities=15% Similarity=0.077 Sum_probs=26.8
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEe
Q 026235 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (241)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (241)
..+.||++|||..... ...+++.|.+.|++|...
T Consensus 25 ~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~ 59 (277)
T 3gvc_A 25 PDLAGKVAIVTGAGAGIGLAVARRLADEGCHVLCA 59 (277)
T ss_dssp --CTTCEEEETTTTSTHHHHHHHHHHHTTCEEEEE
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEE
Confidence 4688999999988754 678999999999987653
No 454
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2
Probab=33.63 E-value=52 Score=26.91 Aligned_cols=36 Identities=11% Similarity=-0.008 Sum_probs=27.0
Q ss_pred ccCCCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEE
Q 026235 43 SASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLE 78 (241)
Q Consensus 43 ~~~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~ 78 (241)
.-...+.||++|||..... ...+++.|.+.|++|..
T Consensus 14 ~~~~~l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~ 50 (267)
T 1vl8_A 14 KEVFDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVV 50 (267)
T ss_dssp ---CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred CCCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEE
Confidence 3445677999999988754 67889999999998764
No 455
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}
Probab=33.62 E-value=1.1e+02 Score=24.79 Aligned_cols=30 Identities=17% Similarity=0.139 Sum_probs=24.2
Q ss_pred CCCeEEEeCCCCC-hHHHHHHHHHCCCcEEE
Q 026235 49 SNPKVVVTRERGK-NGKLIKALAKHRIDCLE 78 (241)
Q Consensus 49 ~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~ 78 (241)
.+++||||..... ...+++.|.+.|+++..
T Consensus 25 ~~k~vlITGas~gIG~a~a~~l~~~G~~V~~ 55 (272)
T 4e3z_A 25 DTPVVLVTGGSRGIGAAVCRLAARQGWRVGV 55 (272)
T ss_dssp CSCEEEETTTTSHHHHHHHHHHHHTTCEEEE
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEE
Confidence 4688999988754 67889999999998753
No 456
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}
Probab=33.49 E-value=1.4e+02 Score=24.67 Aligned_cols=60 Identities=17% Similarity=0.124 Sum_probs=37.2
Q ss_pred CCCeEEEeCCCC-ChHHHHHHHHHCCCcEEEec------------eEEEeeC--CCchHHHHHHhcCCCccEEEEeCH
Q 026235 49 SNPKVVVTRERG-KNGKLIKALAKHRIDCLELP------------LIQHAQG--PDTDRLSSVLNADTIFDWIIITSP 111 (241)
Q Consensus 49 ~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P------------~~~~~~~--~~~~~l~~~l~~l~~~d~IiFTS~ 111 (241)
.+|+||||.... -+..+.+.|.+.|++|..+- -++.... .+.+.+.+.+ ..+|.||.+..
T Consensus 12 ~~M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~---~~~d~vih~a~ 86 (342)
T 2x4g_A 12 AHVKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYLEPECRVAEMLDHAGLERAL---RGLDGVIFSAG 86 (342)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGGGGGCCEEEECCTTCHHHHHHHT---TTCSEEEEC--
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhhccCCeEEEEecCCCHHHHHHHH---cCCCEEEECCc
Confidence 347899998765 36778888888998887542 1112211 2334454444 57899998765
No 457
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=33.45 E-value=55 Score=26.96 Aligned_cols=84 Identities=19% Similarity=0.175 Sum_probs=51.2
Q ss_pred CeEEEeCCCCC-------hHHHHHHHHHCCCcEEEeceEEEeeCCCc----hHHHHHHhcCCCccEEEEeCHHHHHHHHH
Q 026235 51 PKVVVTRERGK-------NGKLIKALAKHRIDCLELPLIQHAQGPDT----DRLSSVLNADTIFDWIIITSPEAGSVFLE 119 (241)
Q Consensus 51 ~~VLitR~~~~-------~~~l~~~L~~~G~~v~~~P~~~~~~~~~~----~~l~~~l~~l~~~d~IiFTS~~aV~~f~~ 119 (241)
++|.+..+... ..-+.+.|++.|.++.. .+. ...+. ..+.+.+.....+|+|+.++-.....+.+
T Consensus 124 ~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~--~~~--~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~ 199 (313)
T 2h3h_A 124 GKVVIGTGSLTAMNSLQRIQGFKDAIKDSEIEIVD--ILN--DEEDGARAVSLAEAALNAHPDLDAFFGVYAYNGPAQAL 199 (313)
T ss_dssp SEEEEEESCSSCHHHHHHHHHHHHHHTTSSCEEEE--EEE--CSSCHHHHHHHHHHHHHHCTTCCEEEECSTTHHHHHHH
T ss_pred CEEEEEECCCCCccHHHHHHHHHHHhcCCCCEEEE--eec--CCCCHHHHHHHHHHHHHHCcCceEEEEcCCCccHHHHH
Confidence 56766654322 23355667778877653 111 11121 23455555446789999988776677788
Q ss_pred HHHhcCCC-CcEEEEeCHHH
Q 026235 120 AWKEAGTP-NVRIGVVGAGT 138 (241)
Q Consensus 120 ~l~~~~~~-~~~i~aIG~~T 138 (241)
.+.+.+.+ ++.++..+...
T Consensus 200 al~~~G~p~dv~vvg~d~~~ 219 (313)
T 2h3h_A 200 VVKNAGKVGKVKIVCFDTTP 219 (313)
T ss_dssp HHHHTTCTTTSEEEEECCCH
T ss_pred HHHHcCCCCCeEEEEeCCCH
Confidence 88887764 68888887543
No 458
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}
Probab=33.44 E-value=51 Score=26.37 Aligned_cols=34 Identities=18% Similarity=0.072 Sum_probs=26.7
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEe
Q 026235 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (241)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (241)
..+.+++||||..... ...+++.|.++|++|..+
T Consensus 9 ~~l~~k~vlItGasggiG~~la~~l~~~G~~V~~~ 43 (260)
T 3awd_A 9 LRLDNRVAIVTGGAQNIGLACVTALAEAGARVIIA 43 (260)
T ss_dssp GCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 4577899999988654 567888999999887653
No 459
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}
Probab=33.31 E-value=46 Score=27.15 Aligned_cols=34 Identities=9% Similarity=0.089 Sum_probs=27.5
Q ss_pred CCCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEE
Q 026235 45 SASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLE 78 (241)
Q Consensus 45 ~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~ 78 (241)
...+.||++|||..... ...+++.|.++|++|..
T Consensus 15 ~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~ 49 (266)
T 4egf_A 15 VLRLDGKRALITGATKGIGADIARAFAAAGARLVL 49 (266)
T ss_dssp GGCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEE
T ss_pred ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEE
Confidence 34678999999988754 67899999999998764
No 460
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=33.27 E-value=37 Score=25.62 Aligned_cols=68 Identities=12% Similarity=0.159 Sum_probs=0.0
Q ss_pred ccccCCCCCCCeEEEeCC--CCChHHHHHHHHHCCCcEE------------EeceEEEeeCCCc------hHHHHHHhcC
Q 026235 41 ATSASASNSNPKVVVTRE--RGKNGKLIKALAKHRIDCL------------ELPLIQHAQGPDT------DRLSSVLNAD 100 (241)
Q Consensus 41 ~~~~~~~l~g~~VLitR~--~~~~~~l~~~L~~~G~~v~------------~~P~~~~~~~~~~------~~l~~~l~~l 100 (241)
++-..-|..| -++.... ...-.++++.|.+.|++++ -+|+-.+....+. ..+.+.+ .-
T Consensus 17 aag~~lP~~g-vliSv~d~dK~~l~~~a~~l~~lGf~i~AT~GTa~~L~~~Gi~v~~v~k~~egg~~~~~~~i~d~i-~~ 94 (143)
T 2yvq_A 17 STGFKIPQKG-ILIGIQQSFRPRFLGVAEQLHNEGFKLFATEATSDWLNANNVPATPVAWPSQEGQNPSLSSIRKLI-RD 94 (143)
T ss_dssp SCSCCCCCSE-EEEECCGGGHHHHHHHHHHHHTTTCEEEEEHHHHHHHHHTTCCCEEECCGGGC-----CBCHHHHH-HT
T ss_pred hcCCCCCCCC-EEEEecccchHHHHHHHHHHHHCCCEEEECchHHHHHHHcCCeEEEEEeccCCCcccccccHHHHH-HC
Q ss_pred CCccEEEEeC
Q 026235 101 TIFDWIIITS 110 (241)
Q Consensus 101 ~~~d~IiFTS 110 (241)
+++|.||+|.
T Consensus 95 g~i~lVInt~ 104 (143)
T 2yvq_A 95 GSIDLVINLP 104 (143)
T ss_dssp TSCCEEEECC
T ss_pred CCceEEEECC
No 461
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=33.21 E-value=1.2e+02 Score=20.97 Aligned_cols=106 Identities=9% Similarity=0.078 Sum_probs=61.7
Q ss_pred CCeEEEeCCCC-ChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEe----CHHHHHHHHHHHHhc
Q 026235 50 NPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAWKEA 124 (241)
Q Consensus 50 g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFT----S~~aV~~f~~~l~~~ 124 (241)
.++||+.-... ....+...|+..|+++... .+..+....+.. ..+|.|+.- ..++.+. ...+.+.
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~al~~~~~-~~~dlvl~D~~l~~~~g~~~-~~~l~~~ 72 (132)
T 3crn_A 3 LKRILIVDDDTAILDSTKQILEFEGYEVEIA--------ATAGEGLAKIEN-EFFNLALFXIKLPDMEGTEL-LEKAHKL 72 (132)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------SSHHHHHHHHHH-SCCSEEEECSBCSSSBHHHH-HHHHHHH
T ss_pred ccEEEEEeCCHHHHHHHHHHHHHCCceEEEe--------CCHHHHHHHHhc-CCCCEEEEecCCCCCchHHH-HHHHHhh
Confidence 36788887664 3566788888888765422 233333344433 568888763 2345543 3334433
Q ss_pred CCCCcEEEEeCHH----HHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhh
Q 026235 125 GTPNVRIGVVGAG----TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (241)
Q Consensus 125 ~~~~~~i~aIG~~----Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~ 173 (241)
. ++++++.+... ....+.+. |.. ++..+..+.+.|.+.+..
T Consensus 73 ~-~~~~ii~~s~~~~~~~~~~~~~~------ga~-~~l~KP~~~~~L~~~i~~ 117 (132)
T 3crn_A 73 R-PGMKKIMVTGYASLENSVFSLNA------GAD-AYIMKPVNPRDLLEKIKE 117 (132)
T ss_dssp C-TTSEEEEEESCCCHHHHHHHHHT------TCS-EEEESSCCHHHHHHHHHH
T ss_pred C-CCCcEEEEeccccHHHHHHHHhc------cch-hhccCCCCHHHHHHHHHH
Confidence 2 45666665322 22333445 765 567778899999888764
No 462
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*
Probab=33.20 E-value=53 Score=26.38 Aligned_cols=33 Identities=12% Similarity=0.041 Sum_probs=26.4
Q ss_pred CCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEe
Q 026235 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (241)
Q Consensus 47 ~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (241)
.+.||+||||..... ...+++.|.+.|++|...
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~ 37 (249)
T 2ew8_A 4 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIA 37 (249)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE
Confidence 467899999988754 677899999999987643
No 463
>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745}
Probab=33.17 E-value=73 Score=24.86 Aligned_cols=41 Identities=7% Similarity=-0.060 Sum_probs=26.8
Q ss_pred HHHHHHhCCCeeeEeeeeeeecCCCChHHHHHHcCCCCEEEEECCc
Q 026235 193 IEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPS 238 (241)
Q Consensus 193 L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~l~~id~IvFtSps 238 (241)
+.+.++ ...+|+...+|. .....+..+.+...|.|||.+|.
T Consensus 21 l~~~~~-~~~~v~v~dL~~----~~D~~~~~~~l~~aD~iV~~~P~ 61 (177)
T 3ha2_A 21 FKAAIE-NFSNVTWHPLVA----DFNVEQEQSLLLQNDRIILEFPL 61 (177)
T ss_dssp HHHHHT-TCTTEEEEECCT----TCCHHHHHHHHHTCSEEEEEEEC
T ss_pred HHHHHh-cCCCEEEEECCC----cccHHHHHHHHHhCCEEEEECCh
Confidence 444443 346788888888 22233445556789999999884
No 464
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*
Probab=33.08 E-value=49 Score=26.71 Aligned_cols=33 Identities=15% Similarity=0.117 Sum_probs=26.5
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEE
Q 026235 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLE 78 (241)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~ 78 (241)
.++.||+||||..... ...+++.|.+.|++|..
T Consensus 10 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~ 43 (260)
T 2zat_A 10 KPLENKVALVTASTDGIGLAIARRLAQDGAHVVV 43 (260)
T ss_dssp CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEE
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEE
Confidence 3577899999988754 67889999999998764
No 465
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}
Probab=33.06 E-value=57 Score=26.12 Aligned_cols=33 Identities=12% Similarity=-0.010 Sum_probs=26.3
Q ss_pred CCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEe
Q 026235 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (241)
Q Consensus 47 ~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (241)
.+.|++||||..... ...+++.|.++|++|..+
T Consensus 4 ~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~ 37 (264)
T 2pd6_A 4 RLRSALALVTGAGSGIGRAVSVRLAGEGATVAAC 37 (264)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence 467899999988754 677889999999887653
No 466
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Probab=33.05 E-value=58 Score=26.27 Aligned_cols=74 Identities=12% Similarity=0.163 Sum_probs=43.4
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcC--CCccEEEE----eCHHHHHHHH
Q 026235 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD--TIFDWIII----TSPEAGSVFL 118 (241)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l--~~~d~IiF----TS~~aV~~f~ 118 (241)
..+.||++|||....+ ...+++.|.++|++|...- +.. ...+.+.+.+... ....++.. ++...++.++
T Consensus 8 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~--r~~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 83 (252)
T 3f1l_A 8 DLLNDRIILVTGASDGIGREAAMTYARYGATVILLG--RNE--EKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLA 83 (252)
T ss_dssp TTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE--SCH--HHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHH
T ss_pred cccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEe--CCH--HHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHH
Confidence 3578999999988754 6788999999999876431 110 0111222222111 13333332 6778888877
Q ss_pred HHHHh
Q 026235 119 EAWKE 123 (241)
Q Consensus 119 ~~l~~ 123 (241)
+.+.+
T Consensus 84 ~~~~~ 88 (252)
T 3f1l_A 84 QRIAV 88 (252)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76544
No 467
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0
Probab=33.05 E-value=53 Score=26.89 Aligned_cols=34 Identities=9% Similarity=0.035 Sum_probs=28.1
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEe
Q 026235 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (241)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (241)
..+.||++|||....+ ...+++.|.++|++|..+
T Consensus 7 ~~l~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~ 41 (277)
T 3tsc_A 7 GKLEGRVAFITGAARGQGRAHAVRMAAEGADIIAV 41 (277)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred cccCCCEEEEECCccHHHHHHHHHHHHcCCEEEEE
Confidence 4688999999988754 678999999999988754
No 468
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=33.01 E-value=1.3e+02 Score=24.64 Aligned_cols=30 Identities=17% Similarity=0.306 Sum_probs=24.4
Q ss_pred cEEEEEccCCCchhHHHHHHhCCCeeeEee
Q 026235 179 CTVLYPASAKASNEIEEGLSNRGFEVVRLN 208 (241)
Q Consensus 179 ~~iL~~~g~~~~~~L~~~L~~~G~~V~~~~ 208 (241)
...|++++..+.+.+.++|.++|+.+.+-.
T Consensus 118 ~~~lIlqp~~~~~~lr~~L~~~Gf~i~~E~ 147 (230)
T 3lec_A 118 VKTLVLQPNNREDDLRKWLAANDFEIVAED 147 (230)
T ss_dssp CCEEEEEESSCHHHHHHHHHHTTEEEEEEE
T ss_pred CCEEEEECCCChHHHHHHHHHCCCEEEEEE
Confidence 356777888888999999999999876644
No 469
>1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A*
Probab=32.99 E-value=49 Score=24.84 Aligned_cols=37 Identities=11% Similarity=0.181 Sum_probs=24.8
Q ss_pred cCCCccEEEEeCHH-H-------HHHHHHHHHhcCCCCcEEEEeC
Q 026235 99 ADTIFDWIIITSPE-A-------GSVFLEAWKEAGTPNVRIGVVG 135 (241)
Q Consensus 99 ~l~~~d~IiFTS~~-a-------V~~f~~~l~~~~~~~~~i~aIG 135 (241)
++.++|.|||-||. . ++.|++.+....+.+.+++++|
T Consensus 43 ~l~~~d~ii~g~p~y~~g~~p~~~~~fl~~l~~~~l~~k~~~~f~ 87 (169)
T 1obo_A 43 DLNDYQYLIIGCPTLNIGELQSDWEGLYSELDDVDFNGKLVAYFG 87 (169)
T ss_dssp GGGGCSEEEEEEEEETTTEECHHHHHHHTTGGGCCCTTCEEEEEE
T ss_pred HHhhCCEEEEEEeeCCCCcCCHHHHHHHHHhhhcCcCCCEEEEEE
Confidence 45679999998776 2 5667766655455666666654
No 470
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=32.97 E-value=1.4e+02 Score=25.15 Aligned_cols=33 Identities=18% Similarity=0.072 Sum_probs=16.4
Q ss_pred CccEEEEEccCCCchhHHHHHHhCCCeeeEeee
Q 026235 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNT 209 (241)
Q Consensus 177 ~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~~~v 209 (241)
++.+|++....-........++..|+++..+.+
T Consensus 87 ~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~ 119 (411)
T 3nnk_A 87 PGDKVLVPVFGRFGHLLCEIARRCRAEVHTIEV 119 (411)
T ss_dssp TTCEEEEEECSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCCEEEEecCCchHHHHHHHHHHcCCeEEEEec
Confidence 345666655433222245555556666555543
No 471
>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A
Probab=32.97 E-value=53 Score=26.39 Aligned_cols=34 Identities=15% Similarity=0.022 Sum_probs=27.3
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEe
Q 026235 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (241)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (241)
.++.||+||||..... ...+++.|.+.|++|...
T Consensus 11 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~ 45 (247)
T 1uzm_A 11 PPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVT 45 (247)
T ss_dssp CCCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred ccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEE
Confidence 3577899999988754 678899999999987754
No 472
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=32.94 E-value=26 Score=27.74 Aligned_cols=17 Identities=18% Similarity=0.255 Sum_probs=12.7
Q ss_pred HHHHcCCCCEEEEECCc
Q 026235 222 VLKQALSIPVVAVASPS 238 (241)
Q Consensus 222 ~~~~l~~id~IvFtSps 238 (241)
+.+.+...|+|+|.||.
T Consensus 66 l~~~i~~AD~iv~~sP~ 82 (193)
T 3svl_A 66 LAEQIRQADGVVIVTPE 82 (193)
T ss_dssp HHHHHHHSSEEEEEECC
T ss_pred HHHHHHHCCEEEEEecc
Confidence 44445788999999884
No 473
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1
Probab=32.90 E-value=43 Score=27.34 Aligned_cols=92 Identities=9% Similarity=0.014 Sum_probs=52.2
Q ss_pred CCeEEEeCCC--CChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHH--H--------HHHH
Q 026235 50 NPKVVVTRER--GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE--A--------GSVF 117 (241)
Q Consensus 50 g~~VLitR~~--~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~--a--------V~~f 117 (241)
..||++.+.. .....+.+.|++.|+++..++....+..+ ..+..+|.||++-.. . ....
T Consensus 12 ~~~~~~i~~~~~~~~~~i~~~l~~~G~~v~v~~~~~~~~~~---------~~l~~~Dglil~GG~~~~~~~~~~~~l~~~ 82 (239)
T 1o1y_A 12 HVRVLAIRHVEIEDLGMMEDIFREKNWSFDYLDTPKGEKLE---------RPLEEYSLVVLLGGYMGAYEEEKYPFLKYE 82 (239)
T ss_dssp CCEEEEECSSTTSSCTHHHHHHHHTTCEEEEECGGGTCCCS---------SCGGGCSEEEECCCSCCTTCTTTCTHHHHH
T ss_pred eeEEEEEECCCCCCchHHHHHHHhCCCcEEEeCCcCccccc---------cchhcCCEEEECCCCccccCCccChhHHHH
Confidence 4678877664 35678999999999988766553211111 123578999998732 1 1122
Q ss_pred HHHHHhcCCCCcEEEEeCHHHHHHHHHhhhccCCCCcee
Q 026235 118 LEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVA 156 (241)
Q Consensus 118 ~~~l~~~~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~ 156 (241)
.+.+.+....+++++.|--.-.-....+ |-++.
T Consensus 83 ~~~i~~~~~~~~PiLGIC~G~QlL~~al------GG~v~ 115 (239)
T 1o1y_A 83 FQLIEEILKKEIPFLGICLGSQMLAKVL------GASVY 115 (239)
T ss_dssp HHHHHHHHHHTCCEEEETHHHHHHHHHT------TCCEE
T ss_pred HHHHHHHHHCCCCEEEEchhHHHHHHHc------CCeEe
Confidence 2333221113577877766543333444 76654
No 474
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Probab=32.87 E-value=55 Score=26.23 Aligned_cols=34 Identities=15% Similarity=0.026 Sum_probs=27.3
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEe
Q 026235 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (241)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (241)
..+.|++||||..... ...+++.|.++|++|..+
T Consensus 8 ~~~~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~ 42 (265)
T 2o23_A 8 RSVKGLVAVITGGASGLGLATAERLVGQGASAVLL 42 (265)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence 4578999999988754 678899999999987653
No 475
>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*
Probab=32.82 E-value=74 Score=27.47 Aligned_cols=79 Identities=11% Similarity=0.023 Sum_probs=48.9
Q ss_pred hhhcCCCCCCcccceeccccccccCCCCCCCeEEEe-CCCCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhc
Q 026235 21 RLRLNRPLPFQFSRIQASSDATSASASNSNPKVVVT-RERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA 99 (241)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~VLit-R~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~ 99 (241)
||..+++.|.|---.++-.--....-++.||++++. |+.--..+++.+|.+.|++|.... ..+..+.+..
T Consensus 150 ~L~~g~~~~~PcTp~gv~~lL~~~~i~l~Gk~vvViGRS~iVGkPla~LL~~~~ATVTi~H-------s~T~dl~~~~-- 220 (303)
T 4b4u_A 150 RMAMGEAAYGSATPAGIMTILKENNIEIAGKHAVVVGRSAILGKPMAMMLLQANATVTICH-------SRTQNLPELV-- 220 (303)
T ss_dssp HHHTTCCCCCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEEC-------TTCSSHHHHH--
T ss_pred HhcCCCCcccCccHHHHHHHHHHHCCCCCCCEEEEEeccccccchHHHHHHhcCCEEEEec-------CCCCCHHHHh--
Confidence 566677766664333221111123447889997766 788889999999999999886432 2223344444
Q ss_pred CCCccEEEEe
Q 026235 100 DTIFDWIIIT 109 (241)
Q Consensus 100 l~~~d~IiFT 109 (241)
...|.||-.
T Consensus 221 -~~ADIvV~A 229 (303)
T 4b4u_A 221 -KQADIIVGA 229 (303)
T ss_dssp -HTCSEEEEC
T ss_pred -hcCCeEEec
Confidence 456777743
No 476
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=32.77 E-value=1e+02 Score=29.73 Aligned_cols=67 Identities=13% Similarity=0.114 Sum_probs=46.5
Q ss_pred hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHH
Q 026235 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAG 137 (241)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~ 137 (241)
-.+|.+.|++.|++|... .+.++....++.-..+++||++---.-..+.+.+.+.+ .+++|+.++..
T Consensus 19 i~~L~~~Le~~g~~V~~a--------~s~~Da~~~i~~~~~i~avIld~d~~~~~ll~~Ir~~~-~~iPVFl~~~~ 85 (715)
T 3n75_A 19 IRELHRALERLNFQIVYP--------NDRDDLLKLIENNARLCGVIFDWDKYNLELCEEISKMN-ENLPLYAFANT 85 (715)
T ss_dssp HHHHHHHHHHTTCEEECC--------SSHHHHHHHHHHCTTEEEEEEEHHHHHHHHHHHHHHHC-TTCEEEEECCT
T ss_pred HHHHHHHHHHCCcEEEEe--------CCHHHHHHHHHhCCCceEEEEeccccHHHHHHHHHHhC-CCCCEEEEecC
Confidence 467888999999998643 34455556666667899999998766566777776653 34666665544
No 477
>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}
Probab=32.71 E-value=42 Score=27.57 Aligned_cols=35 Identities=17% Similarity=0.150 Sum_probs=27.0
Q ss_pred CCCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEe
Q 026235 45 SASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (241)
Q Consensus 45 ~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (241)
..++.||++|||....+ ...+++.|.+.|++|...
T Consensus 23 m~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~ 58 (266)
T 3uxy_A 23 MQGFEGKVALVTGAAGGIGGAVVTALRAAGARVAVA 58 (266)
T ss_dssp ---CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEC
T ss_pred hhCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE
Confidence 34678999999988754 678999999999988754
No 478
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2
Probab=32.68 E-value=56 Score=26.24 Aligned_cols=33 Identities=12% Similarity=0.103 Sum_probs=26.3
Q ss_pred CCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEe
Q 026235 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (241)
Q Consensus 47 ~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (241)
.+.||++|||..... ...+++.|.++|++|...
T Consensus 2 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~ 35 (245)
T 1uls_A 2 RLKDKAVLITGAAHGIGRATLELFAKEGARLVAC 35 (245)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEE
Confidence 367899999988754 677889999999987643
No 479
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2
Probab=32.63 E-value=52 Score=26.70 Aligned_cols=34 Identities=12% Similarity=0.010 Sum_probs=26.7
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEe
Q 026235 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (241)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (241)
..+.||++|||..... ...+++.|.+.|++|..+
T Consensus 9 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~ 43 (267)
T 1iy8_A 9 TRFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLV 43 (267)
T ss_dssp -CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred ccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEE
Confidence 3477999999988754 678899999999987643
No 480
>2f8m_A Ribose 5-phosphate isomerase; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium; 2.09A {Plasmodium falciparum}
Probab=32.56 E-value=83 Score=26.19 Aligned_cols=51 Identities=10% Similarity=-0.126 Sum_probs=42.9
Q ss_pred cCCCccEEEEeCHHHHHHHHHHHHhc----CCCCcEEEEeCHHHHHHHHHhhhccCCCCce
Q 026235 99 ADTIFDWIIITSPEAGSVFLEAWKEA----GTPNVRIGVVGAGTASIFEEVIQSSKCSLDV 155 (241)
Q Consensus 99 ~l~~~d~IiFTS~~aV~~f~~~l~~~----~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~ 155 (241)
.+.+-+.|.+-|.+.+.+|.+.+.+. ++.++.+++=+..|+..|++. |+++
T Consensus 24 ~I~dg~~IgLgsGST~~~~~~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~------gi~v 78 (244)
T 2f8m_A 24 YVQSNMTIGLGTGSTVFYVLERIDNLLKSGKLKDVVCIPTSIDTELKARKL------GIPL 78 (244)
T ss_dssp HCCTTCEEEECCSTTTHHHHHHHHHHHHHTSSCSCEEEESSHHHHHHHHHH------TCCB
T ss_pred hCCCCCEEEEcChHHHHHHHHHHhhhhhccCCCCEEEECCcHHHHHHHHHC------CCeE
Confidence 46788999999999999999999743 334689999999999999998 8765
No 481
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}
Probab=32.53 E-value=52 Score=28.40 Aligned_cols=37 Identities=11% Similarity=0.035 Sum_probs=29.6
Q ss_pred ccCCCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEe
Q 026235 43 SASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (241)
Q Consensus 43 ~~~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (241)
.....+.||+||||....+ ...+++.|.+.|++|..+
T Consensus 38 ~~~~~l~gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~ 75 (346)
T 3kvo_A 38 PNTGRLAGCTVFITGASRGIGKAIALKAAKDGANIVIA 75 (346)
T ss_dssp CCCSTTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEE
T ss_pred ccCCCCCCCEEEEeCCChHHHHHHHHHHHHCCCEEEEE
Confidence 3456789999999988754 677899999999987654
No 482
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=32.50 E-value=74 Score=26.42 Aligned_cols=67 Identities=13% Similarity=0.135 Sum_probs=43.1
Q ss_pred CCCCCCCeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHHHHHH
Q 026235 45 SASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSV 116 (241)
Q Consensus 45 ~~~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~ 116 (241)
-.+|+||+|.++........+...|+++|.+...+ ++.+. +..+....+ .-+..|+++...+.....
T Consensus 126 ~~DLkGk~i~v~~gs~~~~~~~~~l~~~Gl~~~~v---~~v~~-~~~~~~~al-~~G~vDa~~~~~p~~~~~ 192 (324)
T 3ksx_A 126 VADLKGKRIAFQKGSSAHNLLLRVLAKSGLSMRDI---TPLYL-SPANARAAF-AAGQVDAWAIWDPWYSAL 192 (324)
T ss_dssp GGGGTTCEEEECTTSHHHHHHHHHHHHTTCCGGGS---EEEEC-CHHHHHHHH-HTTCCSEEEEETTHHHHH
T ss_pred HHHhCCCEEEecCCChHHHHHHHHHHHcCCCHHHe---EEEeC-CHHHHHHHH-HcCCCCEEEEccHHHHHH
Confidence 35678999999855544555777889999865322 22222 233444555 348899988877766543
No 483
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=32.47 E-value=95 Score=25.76 Aligned_cols=86 Identities=15% Similarity=0.124 Sum_probs=49.9
Q ss_pred CCeEEEeCCCCC------hHHHHHHHHHCCCcEEEeceEEEeeCCCc----hHHHHHHhcCCCccEEEEeCHHHHHHHHH
Q 026235 50 NPKVVVTRERGK------NGKLIKALAKHRIDCLELPLIQHAQGPDT----DRLSSVLNADTIFDWIIITSPEAGSVFLE 119 (241)
Q Consensus 50 g~~VLitR~~~~------~~~l~~~L~~~G~~v~~~P~~~~~~~~~~----~~l~~~l~~l~~~d~IiFTS~~aV~~f~~ 119 (241)
.++|.+..+... ..-+.+.|+++|. +.....+. ...+. ..+.+.+..-..+|+|+.++-...-.+.+
T Consensus 175 ~~~I~~i~~~~~~~~~~R~~Gf~~~l~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~ai~~~nd~~A~g~~~ 251 (342)
T 1jx6_A 175 HTYYSVLYFSEGYISDVRGDTFIHQVNRDNN-FELQSAYY--TKATKQSGYDAAKASLAKHPDVDFIYACSTDVALGAVD 251 (342)
T ss_dssp TCEEEEECCSTTHHHHHHHHHHHHHHHHHHC-CEEEEEEC--CCSSHHHHHHHHHHHHHHCCCCSEEEESSHHHHHHHHH
T ss_pred CceEEEEEcCCcchhhHHHHHHHHHHHhCCC-cEEEEEec--CCCCHHHHHHHHHHHHHhCCCccEEEECCChhHHHHHH
Confidence 467776654432 2235556777775 22211111 11111 23455554446789999988887777788
Q ss_pred HHHhcCCCCcEEEEeCHHH
Q 026235 120 AWKEAGTPNVRIGVVGAGT 138 (241)
Q Consensus 120 ~l~~~~~~~~~i~aIG~~T 138 (241)
.+.+.++.++.++..+...
T Consensus 252 al~~~g~~di~vvg~D~~~ 270 (342)
T 1jx6_A 252 ALAELGREDIMINGWGGGS 270 (342)
T ss_dssp HHHHHTCTTSEEBCSBCCH
T ss_pred HHHHcCCCCcEEEEeCCCH
Confidence 8887777667777776544
No 484
>1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A*
Probab=32.42 E-value=21 Score=26.98 Aligned_cols=37 Identities=14% Similarity=0.291 Sum_probs=25.8
Q ss_pred cCCCccEEEEeCHH---H-----HHHHHHHHHhcCCCCcEEEEeC
Q 026235 99 ADTIFDWIIITSPE---A-----GSVFLEAWKEAGTPNVRIGVVG 135 (241)
Q Consensus 99 ~l~~~d~IiFTS~~---a-----V~~f~~~l~~~~~~~~~i~aIG 135 (241)
++.++|.|||-+|. + ++.|++.+....+.+++++++|
T Consensus 43 ~l~~~d~ii~g~pty~~g~~p~~~~~f~~~l~~~~l~gk~~~~f~ 87 (169)
T 1czn_A 43 DLNAYDYLIIGCPTWNVGELQSDWEGIYDDLDSVNFQGKKVAYFG 87 (169)
T ss_dssp GGGGCSEEEEECCEETTTEECHHHHHHGGGGGGSCCTTCEEEEEE
T ss_pred HHhhCCEEEEEecccCCCcCCHHHHHHHHHhhhhccCCCEEEEEE
Confidence 45679999998876 2 6667776655456677777666
No 485
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Probab=32.38 E-value=58 Score=26.45 Aligned_cols=32 Identities=6% Similarity=0.060 Sum_probs=26.3
Q ss_pred CCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEE
Q 026235 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLE 78 (241)
Q Consensus 47 ~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~ 78 (241)
.+.||+||||..... ...+++.|.+.|++|..
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~ 36 (260)
T 1nff_A 4 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVF 36 (260)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEE
Confidence 477899999988754 67889999999998764
No 486
>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*
Probab=32.36 E-value=2.3e+02 Score=23.94 Aligned_cols=30 Identities=17% Similarity=0.288 Sum_probs=21.9
Q ss_pred CCeEEEeCCCC-ChHHHHHHHH-HCCCcEEEe
Q 026235 50 NPKVVVTRERG-KNGKLIKALA-KHRIDCLEL 79 (241)
Q Consensus 50 g~~VLitR~~~-~~~~l~~~L~-~~G~~v~~~ 79 (241)
+|+||||.... -...+.+.|. +.|++|..+
T Consensus 2 ~m~vlVTGatG~iG~~l~~~L~~~~g~~V~~~ 33 (397)
T 1gy8_A 2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIV 33 (397)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHhCCCEEEEE
Confidence 57899998764 3566777777 888887754
No 487
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Probab=32.36 E-value=78 Score=27.07 Aligned_cols=161 Identities=15% Similarity=0.115 Sum_probs=86.4
Q ss_pred CeEEEeCCCCChHHH----HHHHHHCCCcEEEeceEEEeeCCCchHHHHHH---hcCCCccEEEEeCHH--HH--HHHHH
Q 026235 51 PKVVVTRERGKNGKL----IKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NADTIFDWIIITSPE--AG--SVFLE 119 (241)
Q Consensus 51 ~~VLitR~~~~~~~l----~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l---~~l~~~d~IiFTS~~--aV--~~f~~ 119 (241)
.-|++....+.+..+ .+.+++.|++....-+-+ ....+++.+.+ +.....|.|+.--|= .+ +...+
T Consensus 36 LavilvG~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~---~~s~~ell~~I~~lN~D~~V~GIlvqlPLP~~id~~~i~~ 112 (288)
T 1b0a_A 36 LAVVLVGSNPASQIYVASKRKACEEVGFVSRSYDLPE---TTSEAELLELIDTLNADNTIDGILVQLPLPAGIDNVKVLE 112 (288)
T ss_dssp EEEEEESCCHHHHHHHHHHHHHHHHHTCEECCEEECT---TCCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHT
T ss_pred EEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCC---CCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHh
Confidence 335555555444443 345777898765443211 11234454444 455788999987652 11 11121
Q ss_pred HHH-hcCCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCC--CCccEEEEEccCC-CchhHHH
Q 026235 120 AWK-EAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYPASAK-ASNEIEE 195 (241)
Q Consensus 120 ~l~-~~~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~--~~~~~iL~~~g~~-~~~~L~~ 195 (241)
.+. +...++..-+-+| .|- . |-. .+.| -|++++++.|..+. ..+++++++-... ...-+..
T Consensus 113 ~I~p~KDVDG~~p~n~g-----~l~-~------g~~-~~~P--cTp~gi~~ll~~~~i~l~gk~vvVIG~s~iVG~p~A~ 177 (288)
T 1b0a_A 113 RIHPDKDVDGFHPYNVG-----RLC-Q------RAP-RLRP--CTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSM 177 (288)
T ss_dssp TSCTTTCTTCCSHHHHH-----HHH-T------TCC-SSCC--HHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHH
T ss_pred ccCCccCcccCCccchh-----HHh-C------CCC-CCCC--CcHHHHHHHHHHcCCCCCCCEEEEECCChHHHHHHHH
Confidence 111 1112344333333 332 2 422 2444 48899998887653 4678888886653 3556888
Q ss_pred HHHhCCCeeeEeeeeeeecCCCChHHHHHHcCCCCEEEEECC
Q 026235 196 GLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASP 237 (241)
Q Consensus 196 ~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~l~~id~IvFtSp 237 (241)
.|...|++|.-+.-.. .++.+.+.+.|+|+-+.+
T Consensus 178 lL~~~gAtVtv~hs~t--------~~L~~~~~~ADIVI~Avg 211 (288)
T 1b0a_A 178 ELLLAGCTTTVTHRFT--------KNLRHHVENADLLIVAVG 211 (288)
T ss_dssp HHHTTTCEEEEECSSC--------SCHHHHHHHCSEEEECSC
T ss_pred HHHHCCCeEEEEeCCc--------hhHHHHhccCCEEEECCC
Confidence 8999999987764221 123333356777776554
No 488
>3kwm_A Ribose-5-phosphate isomerase A; structural genomics, IDP02119, center for structu genomics of infectious diseases, csgid; 2.32A {Francisella tularensis subsp}
Probab=32.34 E-value=1.1e+02 Score=25.01 Aligned_cols=53 Identities=8% Similarity=0.037 Sum_probs=43.0
Q ss_pred HHhcCCCccEEEEeCHHHHHHHHHHHHhcCCCCcEE-EEeCHHHHHHHHHhhhccCCCCce
Q 026235 96 VLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRI-GVVGAGTASIFEEVIQSSKCSLDV 155 (241)
Q Consensus 96 ~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i-~aIG~~Ta~~L~~~~~~~~~Gi~~ 155 (241)
+.+...+-+.|..-|.+.+.++.+.+.+.. .++++ ++=+..|++.++++ |+++
T Consensus 20 A~~~V~~g~~IglgsGST~~~~i~~L~~~~-~~itv~VtnS~~~a~~l~~~------gi~l 73 (224)
T 3kwm_A 20 AAKSITTEITLGVGTGSTVGFLIEELVNYR-DKIKTVVSSSEDSTRKLKAL------GFDV 73 (224)
T ss_dssp HHTTCCSSEEEEECCSHHHHHHHHHGGGCT-TTEEEEEESCHHHHHHHHHT------TCCB
T ss_pred HHHhCCCCCEEEECCcHHHHHHHHHHHhhc-CceEEEECCcHHHHHHHHHc------CCeE
Confidence 334557788999999999999999987642 36777 88899999999998 9864
No 489
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=32.27 E-value=2e+02 Score=23.36 Aligned_cols=57 Identities=11% Similarity=0.026 Sum_probs=33.7
Q ss_pred EEEEeCHHHHHHHHHHHHhcCCCCcEEEEeCHHHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhh
Q 026235 105 WIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (241)
Q Consensus 105 ~IiFTS~~aV~~f~~~l~~~~~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~ 173 (241)
...|+|...++.....+.+ .+..+++=|..+.+.++++ |++..+.- +.+++.++|.+
T Consensus 134 ~~~~~~~ee~~~~i~~l~~---~G~~vVVG~~~~~~~A~~~------Gl~~vlI~---s~eSI~~Ai~e 190 (225)
T 2pju_A 134 QRSYITEEDARGQINELKA---NGTEAVVGAGLITDLAEEA------GMTGIFIY---SAATVRQAFSD 190 (225)
T ss_dssp EEEESSHHHHHHHHHHHHH---TTCCEEEESHHHHHHHHHT------TSEEEESS---CHHHHHHHHHH
T ss_pred EEEeCCHHHHHHHHHHHHH---CCCCEEECCHHHHHHHHHc------CCcEEEEC---CHHHHHHHHHH
Confidence 3344444444444444433 3566766677777788888 88875543 35777766653
No 490
>2pjm_A Ribose-5-phosphate isomerase A; 3D-structure, structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; 1.78A {Methanocaldococcus jannaschii} PDB: 3ixq_A*
Probab=32.22 E-value=71 Score=26.28 Aligned_cols=54 Identities=6% Similarity=-0.118 Sum_probs=43.8
Q ss_pred HHhcCCCccEEEEeCHHHHHHHHHHHHhcC---CCCcEEEEeCHHHHHHHHHhhhccCCCCce
Q 026235 96 VLNADTIFDWIIITSPEAGSVFLEAWKEAG---TPNVRIGVVGAGTASIFEEVIQSSKCSLDV 155 (241)
Q Consensus 96 ~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~---~~~~~i~aIG~~Ta~~L~~~~~~~~~Gi~~ 155 (241)
+.+.+.+-+.|.+-|.+.+.++.+.+.+.. -.++.+++=+..|++.+++. |+++
T Consensus 14 A~~~I~~g~~IglgsGST~~~~~~~L~~~~~~~~l~itvVtnS~~~a~~l~~~------gi~v 70 (226)
T 2pjm_A 14 AVKLVKDGMVIGLGTGSTAALFIRELGNRIREEELTVFGIPTSFEAKMLAMQY------EIPL 70 (226)
T ss_dssp HGGGCCTTCEEEECCSHHHHHHHHHHHHHHHHHTCCCEEEESSHHHHHHHHHT------TCCB
T ss_pred HHHHCCCCCEEEECCCHHHHHHHHHHHhhhhccCCcEEEEeCcHHHHHHHHhc------CCeE
Confidence 344567889999999999999999887641 12688999999999999998 8764
No 491
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=32.21 E-value=34 Score=29.03 Aligned_cols=75 Identities=8% Similarity=-0.016 Sum_probs=46.3
Q ss_pred CCCeEEEeCCCCChHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEEeCHH---H----HHHHHHHH
Q 026235 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE---A----GSVFLEAW 121 (241)
Q Consensus 49 ~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~---a----V~~f~~~l 121 (241)
.|.+|+++.+.-........++..|+++..+|+-.. ...+.+.+.+.++.-.+...|++++++ | ++.+.+.+
T Consensus 82 ~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~ 160 (392)
T 2z9v_A 82 PDDVVLNLASGVYGKGFGYWAKRYSPHLLEIEVPYN-EAIDPQAVADMLKAHPEITVVSVCHHDTPSGTINPIDAIGALV 160 (392)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHCSCEEEEECCTT-SCCCHHHHHHHHHHCTTCCEEEEESEEGGGTEECCHHHHHHHH
T ss_pred CCCEEEEecCCcccHHHHHHHHHcCCceEEeeCCCC-CCCCHHHHHHHHhcCCCCcEEEEeccCCCCceeccHHHHHHHH
Confidence 467899988764333355566678999988876321 112456677777432456788888875 2 45555555
Q ss_pred Hhc
Q 026235 122 KEA 124 (241)
Q Consensus 122 ~~~ 124 (241)
.+.
T Consensus 161 ~~~ 163 (392)
T 2z9v_A 161 SAH 163 (392)
T ss_dssp HHT
T ss_pred HHc
Confidence 543
No 492
>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*
Probab=32.19 E-value=1.9e+02 Score=23.66 Aligned_cols=65 Identities=15% Similarity=0.109 Sum_probs=43.1
Q ss_pred CCeEEEeCCCCC-hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCCCccEEEE----eCHHHHHHHHHHHHh
Q 026235 50 NPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIII----TSPEAGSVFLEAWKE 123 (241)
Q Consensus 50 g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiF----TS~~aV~~f~~~l~~ 123 (241)
+|+||||....+ ...+++.|.+.|++|...- .+.+.+.+..+... +...+ |.+.+++.+++...+
T Consensus 2 nK~vlVTGas~GIG~aia~~la~~Ga~V~~~~-------~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~v~~~~~ 71 (247)
T 3ged_A 2 NRGVIVTGGGHGIGKQICLDFLEAGDKVCFID-------IDEKRSADFAKERP--NLFYFHGDVADPLTLKKFVEYAME 71 (247)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-------SCHHHHHHHHTTCT--TEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEe-------CCHHHHHHHHHhcC--CEEEEEecCCCHHHHHHHHHHHHH
Confidence 488999988654 6789999999999987531 12233344333323 33333 789999998886654
No 493
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}
Probab=32.06 E-value=60 Score=26.64 Aligned_cols=76 Identities=16% Similarity=-0.016 Sum_probs=44.1
Q ss_pred CCCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCC-CccEEE--EeCHHHHHHHHHH
Q 026235 45 SASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT-IFDWII--ITSPEAGSVFLEA 120 (241)
Q Consensus 45 ~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~-~~d~Ii--FTS~~aV~~f~~~ 120 (241)
...+.||++|||....+ ...+++.|.+.|++|...-. ......+.+.+.+...+ ...++. +++..+++.+++.
T Consensus 26 ~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~ 102 (271)
T 3v2g_A 26 SISLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYV---NAAERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRE 102 (271)
T ss_dssp TTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES---SCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeC---CCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHH
Confidence 34688999999988754 67899999999998764311 00000122223332221 211211 3678888887776
Q ss_pred HHh
Q 026235 121 WKE 123 (241)
Q Consensus 121 l~~ 123 (241)
+.+
T Consensus 103 ~~~ 105 (271)
T 3v2g_A 103 TVE 105 (271)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 494
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}
Probab=32.06 E-value=54 Score=26.92 Aligned_cols=35 Identities=11% Similarity=0.056 Sum_probs=27.0
Q ss_pred CCCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEe
Q 026235 45 SASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (241)
Q Consensus 45 ~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (241)
...+.||+||||..... ...+++.|.++|++|...
T Consensus 6 ~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~ 41 (281)
T 3svt_A 6 QLSFQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIV 41 (281)
T ss_dssp --CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred ccCcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE
Confidence 34678999999988754 667899999999987643
No 495
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B* 1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B* 3k1a_B* 3min_B*
Probab=32.04 E-value=38 Score=31.43 Aligned_cols=142 Identities=9% Similarity=-0.031 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCcEEEeceEE-------------EeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHhc-CCCC
Q 026235 63 GKLIKALAKHRIDCLELPLIQ-------------HAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA-GTPN 128 (241)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~-------------~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~-~~~~ 128 (241)
.++.+.|++.|+++..+|=+. +......+++... +..+.-+..++..-....+.+++. +.+-
T Consensus 238 ~elkrlL~~~Gi~v~~lpd~s~~ld~p~~~~~~~~~ggtt~~ei~~~----~~A~~niv~~~~~~~~~A~~Le~~~GiP~ 313 (523)
T 3u7q_B 238 RVIKRMLSEMGVGYSLLSDPEEVLDTPADGQFRMYAGGTTQEEMKDA----PNALNTVLLQPWHLEKTKKFVEGTWKHEV 313 (523)
T ss_dssp HHHHHHHHHTTCCEEESSCCTTTTSCCCSSCCCSCCCCBCHHHHHHG----GGSSEEEESSGGGCHHHHHHHHHTSCCCC
T ss_pred HHHHHHHHHcCCeEEEecCchhcccccccccccccCCCCCHHHHHHh----hcCcEEEEEccchHHHHHHHHHHHhCCCe
Q ss_pred cEE-EEeCH-HHHHHHHHhhhccCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEccCCCchhHHHHHHhCCCeeeE
Q 026235 129 VRI-GVVGA-GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVR 206 (241)
Q Consensus 129 ~~i-~aIG~-~Ta~~L~~~~~~~~~Gi~~~~~p~~~t~e~L~~~l~~~~~~~~~iL~~~g~~~~~~L~~~L~~~G~~V~~ 206 (241)
+.+ .-+|. .|.+.|++..+-.---+...+..+......-+....... .|+++++..+..-.-.|...|.+.|.++..
T Consensus 314 i~~~~PiG~~~T~~~l~~la~~~g~~~~~~i~~er~r~~~~l~d~~~~l-~GKrvaI~gd~~~~~~la~fL~elGm~vv~ 392 (523)
T 3u7q_B 314 PKLNIPMGLDWTDEFLMKVSEISGQPIPASLTKERGRLVDMMTDSHTWL-HGKRFALWGDPDFVMGLVKFLLELGCEPVH 392 (523)
T ss_dssp CCCCCSCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH-TTCEEEEECSHHHHHHHHHHHHHTTCEEEE
T ss_pred eecCCcCCHHHHHHHHHHHHHHHCCChhHHHHHHHHHHHHHHHHHHHhc-CCCEEEEECCchHHHHHHHHHHHcCCEEEE
Q ss_pred eee
Q 026235 207 LNT 209 (241)
Q Consensus 207 ~~v 209 (241)
+.+
T Consensus 393 v~~ 395 (523)
T 3u7q_B 393 ILC 395 (523)
T ss_dssp EEE
T ss_pred EEe
No 496
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*
Probab=32.01 E-value=49 Score=27.14 Aligned_cols=34 Identities=12% Similarity=0.024 Sum_probs=27.6
Q ss_pred CCCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEE
Q 026235 45 SASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLE 78 (241)
Q Consensus 45 ~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~ 78 (241)
..++.||++|||....+ ...+++.|.+.|++|..
T Consensus 23 ~~~l~~k~vlVTGas~gIG~aia~~la~~G~~V~~ 57 (269)
T 4dmm_A 23 ALPLTDRIALVTGASRGIGRAIALELAAAGAKVAV 57 (269)
T ss_dssp -CTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEE
T ss_pred ccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEE
Confidence 45788999999988754 67799999999998864
No 497
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0
Probab=31.96 E-value=43 Score=27.51 Aligned_cols=87 Identities=15% Similarity=0.127 Sum_probs=46.6
Q ss_pred CCCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEeceEEEeeCCCchHHHHHHhcCC--CccEEE--EeCH-HHHHHHH
Q 026235 45 SASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT--IFDWII--ITSP-EAGSVFL 118 (241)
Q Consensus 45 ~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~--~~d~Ii--FTS~-~aV~~f~ 118 (241)
...+.||+||||....+ +..+++.|.++|++|...- +.. .......+.+.... ...++. +++. ..++.++
T Consensus 7 ~~~~~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~--r~~--~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~ 82 (311)
T 3o26_A 7 NTVTKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTC--RDV--TKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLA 82 (311)
T ss_dssp -----CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEE--SCH--HHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHH
T ss_pred CccCCCcEEEEecCCchHHHHHHHHHHHCCCEEEEEe--CCH--HHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHH
Confidence 34567899999988754 6788999999998765431 100 01112222232222 222322 3676 8888888
Q ss_pred HHHHhc-CCCCcEEEEeC
Q 026235 119 EAWKEA-GTPNVRIGVVG 135 (241)
Q Consensus 119 ~~l~~~-~~~~~~i~aIG 135 (241)
+.+.+. +.-+.-|.+.|
T Consensus 83 ~~~~~~~g~iD~lv~nAg 100 (311)
T 3o26_A 83 DFIKTHFGKLDILVNNAG 100 (311)
T ss_dssp HHHHHHHSSCCEEEECCC
T ss_pred HHHHHhCCCCCEEEECCc
Confidence 876543 22344555555
No 498
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}
Probab=31.93 E-value=51 Score=27.08 Aligned_cols=34 Identities=12% Similarity=0.096 Sum_probs=27.7
Q ss_pred CCCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEE
Q 026235 45 SASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLE 78 (241)
Q Consensus 45 ~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~ 78 (241)
...+.||++|||....+ ...+++.|.+.|++|..
T Consensus 23 ~~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~ 57 (270)
T 3ftp_A 23 DKTLDKQVAIVTGASRGIGRAIALELARRGAMVIG 57 (270)
T ss_dssp CCTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEE
T ss_pred ccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEE
Confidence 45688999999988754 67899999999998764
No 499
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}
Probab=31.92 E-value=58 Score=27.11 Aligned_cols=34 Identities=12% Similarity=0.110 Sum_probs=28.2
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEe
Q 026235 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (241)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (241)
..+.||++|||....+ ...+++.|.+.|++|..+
T Consensus 24 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~ 58 (299)
T 3t7c_A 24 GKVEGKVAFITGAARGQGRSHAITLAREGADIIAI 58 (299)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred cccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEE
Confidence 4688999999988754 677899999999998754
No 500
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}
Probab=31.92 E-value=47 Score=27.10 Aligned_cols=35 Identities=11% Similarity=0.059 Sum_probs=27.6
Q ss_pred CCCCCCCeEEEeCCCCC-hHHHHHHHHHCCCcEEEe
Q 026235 45 SASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (241)
Q Consensus 45 ~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (241)
..++.||++|||....+ ...+++.|.++|++|...
T Consensus 6 ~~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~ 41 (262)
T 3ksu_A 6 YHDLKNKVIVIAGGIKNLGALTAKTFALESVNLVLH 41 (262)
T ss_dssp CSCCTTCEEEEETCSSHHHHHHHHHHTTSSCEEEEE
T ss_pred ccCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 45678999999988654 667888999999987753
Done!