BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026236
(241 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PFF|A Chain A, Truncated Human Atp-Citrate Lyase With Adp And Tartrate
Bound
Length = 829
Score = 244 bits (623), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 120/235 (51%), Positives = 161/235 (68%), Gaps = 4/235 (1%)
Query: 2 GVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVL 61
G+F ++DL F+++E+NP + Y LD+ ++D TA + KW +IEFP PFGR
Sbjct: 187 GLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKWGDIEFPPPFGREA 246
Query: 62 SSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAE 121
E++I LD K+ ASLK T+LNPKGRIWTMVAGGGASV+Y+DT+ DLG +EL NY E
Sbjct: 247 YPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNELANYGE 306
Query: 122 YSGAPNEEEVLQYARVVIDCATAD--PDGRKRALLIGGGIANFTDVATTFNGIIRALREK 179
YSGAP+E++ YA+ ++ T + PDG + L+IGG IANFT+VA TF GI+RA+R+
Sbjct: 307 YSGAPSEQQTYDYAKTILSLMTREKHPDG--KILIIGGSIANFTNVAATFKGIVRAIRDY 364
Query: 180 ESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAI 234
+ LK + IFVRRGGPNYQ GL M +G+ GIP+ V+G E MT I A+
Sbjct: 365 QGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIPIHVFGTETHMTAIVGMAL 419
>pdb|3MWE|A Chain A, Truncated Human Atp-Citrate Lyase With Tartrate Bound
Length = 425
Score = 244 bits (622), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 120/235 (51%), Positives = 161/235 (68%), Gaps = 4/235 (1%)
Query: 2 GVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVL 61
G+F ++DL F+++E+NP + Y LD+ ++D TA + KW +IEFP PFGR
Sbjct: 187 GLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKWGDIEFPPPFGREA 246
Query: 62 SSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAE 121
E++I LD K+ ASLK T+LNPKGRIWTMVAGGGASV+Y+DT+ DLG +EL NY E
Sbjct: 247 YPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNELANYGE 306
Query: 122 YSGAPNEEEVLQYARVVIDCATAD--PDGRKRALLIGGGIANFTDVATTFNGIIRALREK 179
YSGAP+E++ YA+ ++ T + PDG + L+IGG IANFT+VA TF GI+RA+R+
Sbjct: 307 YSGAPSEQQTYDYAKTILSLMTREKHPDG--KILIIGGSIANFTNVAATFKGIVRAIRDY 364
Query: 180 ESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAI 234
+ LK + IFVRRGGPNYQ GL M +G+ GIP+ V+G E MT I A+
Sbjct: 365 QGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIPIHVFGTETHMTAIVGMAL 419
>pdb|3MWD|A Chain A, Truncated Human Atp-Citrate Lyase With Citrate Bound
Length = 425
Score = 236 bits (602), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 117/235 (49%), Positives = 158/235 (67%), Gaps = 4/235 (1%)
Query: 2 GVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVL 61
G+F ++DL F+++E+NP + Y LD+ ++D TA + KW +IEFP PFGR
Sbjct: 187 GLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKWGDIEFPPPFGREA 246
Query: 62 SSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAE 121
E++I LD K+ ASLK T+LNPKGRIWT VAGGGASV+Y+DT+ DLG +EL NY E
Sbjct: 247 YPEEAYIADLDAKSGASLKLTLLNPKGRIWTXVAGGGASVVYSDTICDLGGVNELANYGE 306
Query: 122 YSGAPNEEEVLQYARVVIDCATAD--PDGRKRALLIGGGIANFTDVATTFNGIIRALREK 179
YSGAP+E++ YA+ ++ T + PDG+ L+IGG IANFT+VA TF GI+RA+R+
Sbjct: 307 YSGAPSEQQTYDYAKTILSLXTREKHPDGK--ILIIGGSIANFTNVAATFKGIVRAIRDY 364
Query: 180 ESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAI 234
+ LK + IFVRRGGPNYQ GL +G+ GIP+ V+G E T I A+
Sbjct: 365 QGPLKEHEVTIFVRRGGPNYQEGLRVXGEVGKTTGIPIHVFGTETHXTAIVGXAL 419
>pdb|1EUC|B Chain B, Crystal Structure Of Dephosphorylated Pig Heart, Gtp-
Specific Succinyl-Coa Synthetase
Length = 396
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 82/199 (41%), Gaps = 28/199 (14%)
Query: 3 VFAVFQDLDFSFIEMNPF-TLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVL 61
++ +F +D + +E+NPF G+ D + DD A F+ +A +
Sbjct: 192 LYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFAMDD--------- 242
Query: 62 SSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAE 121
S I +E LK+ L+ G I V G G ++ D + + N+ +
Sbjct: 243 KSENEPIE--NEAAKYDLKYIGLD--GNIACFVNGAGLAMATCDII--FLNGGKPANFLD 296
Query: 122 YSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKES 181
G E +V Q +++ TADP + I GGI N +A NGI +A RE E
Sbjct: 297 LGGGVKESQVYQAFKLL----TADPKVEAILVNIFGGIVNXAIIA---NGITKACRELEL 349
Query: 182 KLKAARMHIFVRRGGPNYQ 200
K+ + VR G N
Sbjct: 350 KVP-----LVVRLEGTNVH 363
>pdb|1EUD|B Chain B, Crystal Structure Of Phosphorylated Pig Heart,
Gtp-Specific Succinyl-Coa Synthetase
Length = 396
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 82/199 (41%), Gaps = 28/199 (14%)
Query: 3 VFAVFQDLDFSFIEMNPF-TLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVL 61
++ +F +D + +E+NPF G+ D + DD A F+ +A +
Sbjct: 192 LYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFAMDD--------- 242
Query: 62 SSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAE 121
S I +E LK+ L+ G I V G G ++ D + + N+ +
Sbjct: 243 KSENEPIE--NEAAKYDLKYIGLD--GNIACFVNGAGLAMATCDII--FLNGGKPANFLD 296
Query: 122 YSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKES 181
G E +V Q +++ TADP + I GGI N +A NGI +A RE E
Sbjct: 297 LGGGVKESQVYQAFKLL----TADPKVEAILVNIFGGIVNXAIIA---NGITKAXRELEL 349
Query: 182 KLKAARMHIFVRRGGPNYQ 200
K+ + VR G N
Sbjct: 350 KVP-----LVVRLEGTNVH 363
>pdb|1CQI|B Chain B, Crystal Structure Of The Complex Of Adp And Mg2+ With
Dephosphorylated E. Coli Succinyl-Coa Synthetase
pdb|1CQI|E Chain E, Crystal Structure Of The Complex Of Adp And Mg2+ With
Dephosphorylated E. Coli Succinyl-Coa Synthetase
pdb|1CQJ|B Chain B, Crystal Structure Of Dephosphorylated E. Coli Succinyl-Coa
Synthetase
pdb|1CQJ|E Chain E, Crystal Structure Of Dephosphorylated E. Coli Succinyl-Coa
Synthetase
Length = 385
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 74/181 (40%), Gaps = 27/181 (14%)
Query: 1 MGVFAVFQDLDFSFIEMNPFTLV-NGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGR 59
MG+ +F + D + IE+NP + G+ LD + D A F+ P R
Sbjct: 182 MGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQ-----------PDLR 230
Query: 60 VLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNY 119
+ E +A + + G I MV G G ++ D V G E N+
Sbjct: 231 EMRDQSQ--EDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHG--GEPANF 286
Query: 120 AEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIG--GGIANFTDVATTFNGIIRALR 177
+ G +E V + ++++ D + +A+L+ GGI +A +GII A+
Sbjct: 287 LDVGGGATKERVTEAFKIILS------DDKVKAVLVNIFGGIVRCDLIA---DGIIGAVA 337
Query: 178 E 178
E
Sbjct: 338 E 338
>pdb|1SCU|B Chain B, The Crystal Structure Of Succinyl-Coa Synthetase From
Escherichia Coli At 2.5 Angstroms Resolution
pdb|1SCU|E Chain E, The Crystal Structure Of Succinyl-Coa Synthetase From
Escherichia Coli At 2.5 Angstroms Resolution
pdb|2SCU|B Chain B, A Detailed Description Of The Structure Of Succinyl-Coa
Synthetase From Escherichia Coli
pdb|2SCU|E Chain E, A Detailed Description Of The Structure Of Succinyl-Coa
Synthetase From Escherichia Coli
pdb|1JKJ|B Chain B, E. Coli Scs
pdb|1JKJ|E Chain E, E. Coli Scs
pdb|2NU6|B Chain B, C123aa Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU6|E Chain E, C123aa Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU7|B Chain B, C123as Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU7|E Chain E, C123as Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU8|B Chain B, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU8|E Chain E, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU9|B Chain B, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
pdb|2NU9|E Chain E, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
pdb|2NU9|G Chain G, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
pdb|2NU9|I Chain I, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
pdb|2NUA|B Chain B, C123av Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NUA|E Chain E, C123av Mutant Of E. Coli Succinyl-Coa Synthetase
Length = 388
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 74/181 (40%), Gaps = 27/181 (14%)
Query: 1 MGVFAVFQDLDFSFIEMNPFTLV-NGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGR 59
MG+ +F + D + IE+NP + G+ LD + D A F+ P R
Sbjct: 182 MGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQ-----------PDLR 230
Query: 60 VLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNY 119
+ E +A + + G I MV G G ++ D V G E N+
Sbjct: 231 EMRDQSQ--EDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHG--GEPANF 286
Query: 120 AEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIG--GGIANFTDVATTFNGIIRALR 177
+ G +E V + ++++ D + +A+L+ GGI +A +GII A+
Sbjct: 287 LDVGGGATKERVTEAFKIILS------DDKVKAVLVNIFGGIVRCDLIA---DGIIGAVA 337
Query: 178 E 178
E
Sbjct: 338 E 338
>pdb|1JLL|B Chain B, Crystal Structure Analysis Of The E197betaa Mutant Of E.
Coli Scs
pdb|1JLL|E Chain E, Crystal Structure Analysis Of The E197betaa Mutant Of E.
Coli Scs
Length = 388
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 73/181 (40%), Gaps = 27/181 (14%)
Query: 1 MGVFAVFQDLDFSFIEMNPFTLV-NGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGR 59
MG+ +F + D + I +NP + G+ LD + D A F+ P R
Sbjct: 182 MGLATIFLERDLALIAINPLVITKQGDLICLDGKLGADGNALFRQ-----------PDLR 230
Query: 60 VLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNY 119
+ E +A + + G I MV G G ++ D V G E N+
Sbjct: 231 EMRDQSQ--EDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHG--GEPANF 286
Query: 120 AEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIG--GGIANFTDVATTFNGIIRALR 177
+ G +E V + ++++ D + +A+L+ GGI +A +GII A+
Sbjct: 287 LDVGGGATKERVTEAFKIILS------DDKVKAVLVNIFGGIVRCDLIA---DGIIGAVA 337
Query: 178 E 178
E
Sbjct: 338 E 338
>pdb|2V8A|B Chain B, The Structure Of Thermosynechococcus Elongatus
Allophycocyanin At 3.5 Angstroems.
pdb|3DBJ|B Chain B, Allophycocyanin From Thermosynechococcus Vulcanus
pdb|3DBJ|D Chain D, Allophycocyanin From Thermosynechococcus Vulcanus
pdb|3DBJ|F Chain F, Allophycocyanin From Thermosynechococcus Vulcanus
pdb|3DBJ|H Chain H, Allophycocyanin From Thermosynechococcus Vulcanus
Length = 161
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 13/107 (12%)
Query: 31 DMRGELDDTAAFKNFKKW-ANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFT-VLNPKG 88
D++G+ DTAA + K + A E + V+S+ + I + E + SL ++ + P G
Sbjct: 13 DVQGKYLDTAAMEKLKAYFATGELRVRAASVISANAANI--VKEAVAKSLLYSDITRPGG 70
Query: 89 RIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPN--EEEVLQ 133
++T + YA + DL Y YA +G P+ +E VL
Sbjct: 71 XMYT-------TRRYAACIRDLDYYLRYATYAMLAGDPSILDERVLN 110
>pdb|2E1M|A Chain A, Crystal Structure Of L-Glutamate Oxidase From Streptomyces
Sp. X-119-6
Length = 376
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 127 NEEEVLQYARVVIDCATADPDGRKRALLIGGGIA 160
NE+ L+Y V+ID P KR L++G GIA
Sbjct: 22 NEDLKLRYLDVLIDNGLNPPGPPKRILIVGAGIA 55
>pdb|2ZAT|A Chain A, Crystal Structure Of A Mammalian Reductase
pdb|2ZAT|B Chain B, Crystal Structure Of A Mammalian Reductase
pdb|2ZAT|C Chain C, Crystal Structure Of A Mammalian Reductase
pdb|2ZAT|D Chain D, Crystal Structure Of A Mammalian Reductase
Length = 260
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 57 FGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASEL 116
FG ++ +TE D+ ++K TVL K + M GG SV+ +VG L
Sbjct: 105 FGNIIDATEEV---WDKILHVNVKATVLMTKAVVPEMEKRGGGSVLIVSSVGAYHPFPNL 161
Query: 117 GNY 119
G Y
Sbjct: 162 GPY 164
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,383,661
Number of Sequences: 62578
Number of extensions: 313728
Number of successful extensions: 759
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 755
Number of HSP's gapped (non-prelim): 13
length of query: 241
length of database: 14,973,337
effective HSP length: 96
effective length of query: 145
effective length of database: 8,965,849
effective search space: 1300048105
effective search space used: 1300048105
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)