Query 026236
Match_columns 241
No_of_seqs 118 out of 854
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 08:48:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026236.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026236hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mwd_A ATP-citrate synthase; A 100.0 1.1E-69 3.6E-74 514.8 17.3 223 2-235 187-420 (425)
2 3pff_A ATP-citrate synthase; p 100.0 2E-67 6.9E-72 531.0 17.6 224 2-236 187-421 (829)
3 2nu8_B SCS-beta, succinyl-COA 100.0 3E-60 1E-64 445.1 20.6 204 2-239 183-387 (388)
4 2fp4_B Succinyl-COA ligase [GD 100.0 7.5E-60 2.6E-64 443.5 21.0 203 2-239 190-394 (395)
5 3ufx_B Succinyl-COA synthetase 100.0 2.6E-53 8.9E-58 399.2 13.8 203 2-240 174-377 (397)
6 2csu_A 457AA long hypothetical 99.8 3.8E-21 1.3E-25 183.1 12.0 135 79-238 286-446 (457)
7 3dmy_A Protein FDRA; predicted 97.8 0.0002 6.7E-09 68.8 12.5 133 87-239 249-414 (480)
8 2fp4_A Succinyl-COA ligase [GD 96.7 0.017 5.7E-07 51.9 11.7 132 87-235 152-300 (305)
9 3mwd_B ATP-citrate synthase; A 95.8 0.093 3.2E-06 48.0 11.7 127 87-235 168-316 (334)
10 2nu8_A Succinyl-COA ligase [AD 95.5 0.075 2.6E-06 47.1 9.9 125 87-232 144-285 (288)
11 2yv1_A Succinyl-COA ligase [AD 95.2 0.13 4.3E-06 45.8 10.4 125 87-233 150-291 (294)
12 3dmy_A Protein FDRA; predicted 95.1 0.21 7.2E-06 47.8 12.2 121 86-238 111-236 (480)
13 2yv2_A Succinyl-COA synthetase 94.8 0.12 4.1E-06 46.0 9.0 97 87-201 151-248 (297)
14 1oi7_A Succinyl-COA synthetase 94.6 0.3 1E-05 43.3 11.1 124 87-234 144-284 (288)
15 3pff_A ATP-citrate synthase; p 91.4 1.3 4.5E-05 45.0 11.4 130 87-236 654-803 (829)
16 2csu_A 457AA long hypothetical 87.4 1.4 4.9E-05 41.3 7.7 93 88-200 150-242 (457)
17 2yxb_A Coenzyme B12-dependent 86.0 11 0.00039 30.0 11.5 112 97-238 33-144 (161)
18 3dbi_A Sugar-binding transcrip 83.0 21 0.00072 30.4 13.6 120 87-238 181-309 (338)
19 3g85_A Transcriptional regulat 80.7 22 0.00077 29.2 11.6 122 87-238 127-257 (289)
20 3gv0_A Transcriptional regulat 77.3 28 0.00097 28.8 11.2 120 87-238 127-255 (288)
21 3qk7_A Transcriptional regulat 75.1 35 0.0012 28.4 11.4 119 87-237 126-254 (294)
22 3gyb_A Transcriptional regulat 75.1 33 0.0011 28.0 11.0 119 87-238 118-243 (280)
23 3kke_A LACI family transcripti 73.7 39 0.0013 28.2 11.4 120 87-238 131-264 (303)
24 3k4h_A Putative transcriptiona 73.2 37 0.0013 27.8 13.2 120 87-238 131-259 (292)
25 3d8u_A PURR transcriptional re 72.5 37 0.0013 27.5 13.2 120 87-238 120-248 (275)
26 2nwr_A 2-dehydro-3-deoxyphosph 71.8 10 0.00036 33.2 7.3 50 167-218 17-79 (267)
27 3kjx_A Transcriptional regulat 70.5 46 0.0016 28.3 11.2 120 87-238 185-314 (344)
28 3rot_A ABC sugar transporter, 69.9 46 0.0016 27.6 11.8 123 87-238 130-259 (297)
29 1n8f_A DAHP synthetase; (beta/ 69.6 14 0.00046 34.0 7.7 48 166-218 70-141 (350)
30 1ccw_A Protein (glutamate muta 68.7 37 0.0013 26.0 9.3 115 97-237 18-134 (137)
31 2fep_A Catabolite control prot 64.1 36 0.0012 28.2 8.9 119 87-237 133-261 (289)
32 3tml_A 2-dehydro-3-deoxyphosph 64.0 15 0.00051 32.7 6.7 47 165-218 33-92 (288)
33 3g1w_A Sugar ABC transporter; 63.5 42 0.0014 27.8 9.2 124 86-238 126-255 (305)
34 2xij_A Methylmalonyl-COA mutas 63.1 57 0.002 32.8 11.4 110 97-238 619-730 (762)
35 3h75_A Periplasmic sugar-bindi 62.3 73 0.0025 27.1 10.9 78 88-181 146-229 (350)
36 3fs2_A 2-dehydro-3-deoxyphosph 61.2 16 0.00056 32.7 6.4 47 169-218 57-116 (298)
37 3sz8_A 2-dehydro-3-deoxyphosph 61.2 17 0.00059 32.2 6.6 47 169-218 36-95 (285)
38 3e3m_A Transcriptional regulat 61.1 75 0.0026 27.2 10.7 120 87-238 187-317 (355)
39 3egc_A Putative ribose operon 60.5 57 0.002 26.7 9.5 120 87-238 125-253 (291)
40 3brq_A HTH-type transcriptiona 59.7 70 0.0024 26.0 13.3 120 87-238 139-267 (296)
41 3h5o_A Transcriptional regulat 58.4 83 0.0028 26.7 10.4 120 87-238 178-306 (339)
42 1qpz_A PURA, protein (purine n 57.9 87 0.003 26.5 13.8 119 87-237 177-304 (340)
43 1v6t_A Hypothetical UPF0271 pr 57.2 37 0.0013 29.8 7.8 140 79-239 25-202 (255)
44 3d02_A Putative LACI-type tran 56.5 82 0.0028 25.8 12.7 124 88-238 128-257 (303)
45 1of8_A Phospho-2-dehydro-3-deo 56.3 32 0.0011 31.8 7.6 48 166-218 85-156 (370)
46 2fvy_A D-galactose-binding per 56.2 83 0.0028 25.8 11.5 123 89-238 142-270 (309)
47 2iks_A DNA-binding transcripti 55.4 86 0.0029 25.7 13.2 117 87-237 138-263 (293)
48 3h75_A Periplasmic sugar-bindi 54.6 99 0.0034 26.2 10.7 85 124-214 119-204 (350)
49 3lk7_A UDP-N-acetylmuramoylala 54.6 17 0.00059 33.4 5.6 86 124-239 330-415 (451)
50 2rgy_A Transcriptional regulat 54.2 90 0.0031 25.6 12.3 119 87-238 128-256 (290)
51 3k9c_A Transcriptional regulat 54.2 91 0.0031 25.6 11.1 119 87-238 126-252 (289)
52 3zxn_A RSBS, anti-sigma-factor 53.8 51 0.0018 24.7 7.4 78 147-239 42-120 (123)
53 2dfa_A Hypothetical UPF0271 pr 53.6 35 0.0012 29.9 7.0 62 165-239 121-202 (250)
54 3rst_A Signal peptide peptidas 53.1 30 0.001 29.2 6.6 67 125-204 28-96 (240)
55 3h5t_A Transcriptional regulat 52.8 1.1E+02 0.0037 26.2 11.3 103 102-238 227-333 (366)
56 8abp_A L-arabinose-binding pro 51.8 98 0.0034 25.3 10.4 81 88-181 133-221 (306)
57 1dbq_A Purine repressor; trans 51.8 95 0.0033 25.2 12.8 93 87-199 126-227 (289)
58 1jye_A Lactose operon represso 50.3 94 0.0032 26.5 9.5 78 87-181 179-262 (349)
59 2h0a_A TTHA0807, transcription 48.4 68 0.0023 25.9 7.9 117 87-238 114-245 (276)
60 3jvd_A Transcriptional regulat 47.0 1.3E+02 0.0045 25.4 11.2 115 87-238 174-298 (333)
61 2hsg_A Glucose-resistance amyl 47.0 1.3E+02 0.0044 25.3 13.0 119 87-237 177-305 (332)
62 1tjy_A Sugar transport protein 46.9 1.3E+02 0.0044 25.3 13.6 124 87-239 128-257 (316)
63 3uug_A Multiple sugar-binding 46.5 1E+02 0.0036 25.6 9.0 93 124-238 181-276 (330)
64 2x5e_A UPF0271 protein PA4511; 46.4 47 0.0016 29.1 6.7 140 79-239 31-211 (252)
65 3bbl_A Regulatory protein of L 46.1 1.2E+02 0.0042 24.8 13.6 118 87-237 125-254 (287)
66 2cby_A ATP-dependent CLP prote 45.6 55 0.0019 27.0 6.9 57 128-199 41-97 (208)
67 3tb6_A Arabinose metabolism tr 44.8 61 0.0021 26.4 7.1 122 87-238 137-268 (298)
68 3hcw_A Maltose operon transcri 44.5 1.3E+02 0.0045 24.7 9.6 120 87-238 131-259 (295)
69 3c3k_A Alanine racemase; struc 43.0 59 0.002 26.7 6.7 117 87-238 124-251 (285)
70 3l6u_A ABC-type sugar transpor 42.9 1.2E+02 0.0041 24.6 8.6 121 88-238 136-262 (293)
71 2h3h_A Sugar ABC transporter, 42.9 1.4E+02 0.0049 24.7 12.1 121 87-237 123-249 (313)
72 3mvn_A UDP-N-acetylmuramate:L- 42.4 1.2E+02 0.0041 23.6 8.3 98 119-239 40-138 (163)
73 3l49_A ABC sugar (ribose) tran 42.4 1.4E+02 0.0046 24.3 11.3 123 87-238 125-260 (291)
74 1yg6_A ATP-dependent CLP prote 42.2 54 0.0019 26.6 6.3 56 128-198 40-95 (193)
75 2vos_A Folylpolyglutamate synt 41.8 1.4E+02 0.0047 27.7 9.7 102 116-239 346-449 (487)
76 1jx6_A LUXP protein; protein-l 41.7 1.5E+02 0.0052 24.8 9.3 78 87-181 175-258 (342)
77 4fo5_A Thioredoxin-like protei 41.4 45 0.0015 24.4 5.2 62 146-217 30-91 (143)
78 2o20_A Catabolite control prot 41.1 1.2E+02 0.0041 25.5 8.6 117 87-237 180-305 (332)
79 1req_A Methylmalonyl-COA mutas 40.9 1.5E+02 0.0052 29.6 10.2 112 97-238 611-722 (727)
80 3hgj_A Chromate reductase; TIM 40.8 49 0.0017 29.5 6.2 46 168-218 204-256 (349)
81 3cs3_A Sugar-binding transcrip 39.7 1.5E+02 0.0051 24.0 9.8 120 87-238 118-244 (277)
82 1y7o_A ATP-dependent CLP prote 39.1 63 0.0022 26.9 6.3 60 128-202 59-118 (218)
83 2qv5_A AGR_C_5032P, uncharacte 37.7 2E+02 0.0068 24.9 11.9 75 125-218 106-181 (261)
84 3brs_A Periplasmic binding pro 37.5 1.4E+02 0.0048 24.1 8.2 121 87-237 131-257 (289)
85 3r8n_K 30S ribosomal protein S 37.1 40 0.0014 25.9 4.4 47 166-220 52-98 (117)
86 3raz_A Thioredoxin-related pro 36.9 1.2E+02 0.0042 22.1 7.3 60 146-216 22-81 (151)
87 2wsi_A FAD synthetase; transfe 36.4 2.1E+02 0.0073 24.8 11.3 79 151-233 56-151 (306)
88 1jub_A Dihydroorotate dehydrog 36.3 1.8E+02 0.0061 24.9 9.0 84 122-218 100-189 (311)
89 2dri_A D-ribose-binding protei 36.2 1.7E+02 0.0058 23.6 13.6 119 88-237 124-248 (271)
90 3rot_A ABC sugar transporter, 36.1 1.8E+02 0.0061 23.8 10.1 79 124-214 109-187 (297)
91 2vqe_K 30S ribosomal protein S 33.9 58 0.002 25.5 4.8 46 167-220 63-108 (129)
92 1vhn_A Putative flavin oxidore 33.9 2.3E+02 0.0079 24.5 10.4 87 114-218 58-157 (318)
93 3clk_A Transcription regulator 32.6 2E+02 0.0068 23.4 11.5 119 87-238 125-252 (290)
94 3m9w_A D-xylose-binding peripl 32.3 2.1E+02 0.0072 23.5 9.3 125 86-238 122-256 (313)
95 2qkf_A 3-deoxy-D-manno-octulos 32.1 1E+02 0.0034 26.9 6.6 49 167-218 29-90 (280)
96 3ksm_A ABC-type sugar transpor 31.5 2E+02 0.0067 22.9 11.7 123 87-238 127-255 (276)
97 3gr7_A NADPH dehydrogenase; fl 31.5 85 0.0029 27.9 6.2 44 168-218 196-246 (340)
98 3p04_A Uncharacterized BCR; SE 31.4 56 0.0019 23.9 4.1 29 169-205 18-46 (87)
99 3huu_A Transcription regulator 31.0 2.2E+02 0.0075 23.3 9.3 116 87-238 144-269 (305)
100 2ioy_A Periplasmic sugar-bindi 30.5 2.2E+02 0.0074 23.1 10.4 120 87-237 123-249 (283)
101 1xw8_A UPF0271 protein YBGL; N 30.5 66 0.0023 28.1 5.1 140 79-239 20-197 (252)
102 1rrm_A Lactaldehyde reductase; 29.6 1.6E+02 0.0056 26.1 7.9 60 104-176 52-111 (386)
103 3s2u_A UDP-N-acetylglucosamine 29.3 1.4E+02 0.0049 26.0 7.3 70 153-232 183-252 (365)
104 3hs3_A Ribose operon repressor 29.3 1.9E+02 0.0065 23.4 7.7 117 85-238 120-245 (277)
105 3uhj_A Probable glycerol dehyd 28.9 98 0.0033 28.1 6.2 70 92-173 56-126 (387)
106 1ka5_A Phosphocarrier protein 28.8 64 0.0022 23.1 4.1 29 187-215 58-86 (88)
107 1i96_V Translation initiation 28.8 93 0.0032 22.8 4.9 41 167-213 18-61 (89)
108 3fw2_A Thiol-disulfide oxidore 28.5 1.7E+02 0.0058 21.3 9.0 65 146-220 31-98 (150)
109 3nrs_A Dihydrofolate:folylpoly 28.5 1.6E+02 0.0055 26.7 7.7 99 115-239 311-415 (437)
110 3k4h_A Putative transcriptiona 28.3 2.3E+02 0.008 22.8 9.7 116 91-220 72-198 (292)
111 1pch_A Phosphocarrier protein; 28.2 66 0.0023 23.2 4.0 29 187-215 57-85 (88)
112 1tig_A IF3-C, translation init 27.8 1.1E+02 0.0036 22.7 5.1 40 169-214 25-67 (94)
113 1y7o_A ATP-dependent CLP prote 27.7 2.6E+02 0.0088 23.1 8.5 60 153-220 48-109 (218)
114 2f6i_A ATP-dependent CLP prote 26.2 1.4E+02 0.0046 24.9 6.2 53 128-196 53-105 (215)
115 3fwz_A Inner membrane protein 26.0 1.7E+02 0.0057 21.7 6.2 57 166-238 82-138 (140)
116 3j20_M 30S ribosomal protein S 25.4 1E+02 0.0034 24.4 4.9 46 167-220 62-115 (137)
117 2v03_A Cysteine synthase B; py 25.4 2.2E+02 0.0076 24.2 7.7 61 168-239 72-132 (303)
118 3zwt_A Dihydroorotate dehydrog 24.7 3.8E+02 0.013 24.0 10.9 94 118-218 149-251 (367)
119 3qwd_A ATP-dependent CLP prote 24.4 1.6E+02 0.0054 24.3 6.3 60 128-202 41-100 (203)
120 3o74_A Fructose transport syst 24.3 2.7E+02 0.0091 22.1 9.1 82 126-220 103-186 (272)
121 1ve1_A O-acetylserine sulfhydr 24.3 2.4E+02 0.0081 24.0 7.6 61 168-239 73-133 (304)
122 4ab4_A Xenobiotic reductase B; 24.1 1.5E+02 0.0051 26.7 6.5 45 168-218 205-259 (362)
123 4dgh_A Sulfate permease family 23.9 2.1E+02 0.0073 20.8 7.4 70 151-238 52-127 (130)
124 2xzm_K RPS14E; ribosome, trans 23.2 1.3E+02 0.0043 24.3 5.2 45 168-220 77-129 (151)
125 1o60_A 2-dehydro-3-deoxyphosph 23.1 1.8E+02 0.0062 25.5 6.7 49 167-218 32-93 (292)
126 3p2l_A ATP-dependent CLP prote 22.7 1.8E+02 0.0061 24.0 6.3 59 129-202 45-103 (201)
127 3miz_A Putative transcriptiona 22.7 49 0.0017 27.4 2.8 68 102-189 152-224 (301)
128 4dgf_A Sulfate transporter sul 22.5 2.4E+02 0.0081 20.8 6.5 72 151-240 55-132 (135)
129 2hzg_A Mandelate racemase/muco 22.5 3.9E+02 0.013 23.7 9.0 105 97-217 104-225 (401)
130 1ejb_A Lumazine synthase; anal 22.3 1.1E+02 0.0038 24.9 4.8 129 88-237 17-160 (168)
131 1gud_A ALBP, D-allose-binding 22.3 3.2E+02 0.011 22.2 10.9 121 87-237 133-260 (288)
132 2c92_A 6,7-dimethyl-8-ribityll 22.2 1.5E+02 0.0052 23.9 5.5 125 88-238 18-151 (160)
133 1c2y_A Protein (lumazine synth 22.2 1.7E+02 0.0058 23.5 5.8 125 88-238 14-148 (156)
134 2lnd_A De novo designed protei 22.2 2.4E+02 0.0081 20.7 7.3 62 170-240 41-102 (112)
135 3qk7_A Transcriptional regulat 21.8 2.5E+02 0.0087 22.9 7.1 108 91-213 68-185 (294)
136 3dez_A OPRT, oprtase, orotate 21.7 2.7E+02 0.0094 23.6 7.4 55 169-235 165-219 (243)
137 3m3h_A OPRT, oprtase, orotate 21.7 2.8E+02 0.0096 23.3 7.4 55 169-235 153-207 (234)
138 2q3b_A Cysteine synthase A; py 21.6 2.2E+02 0.0074 24.4 6.9 61 168-239 78-138 (313)
139 1jq5_A Glycerol dehydrogenase; 21.6 2.3E+02 0.0077 25.0 7.1 71 89-173 32-106 (370)
140 3l5l_A Xenobiotic reductase A; 21.4 78 0.0027 28.4 4.0 46 168-218 210-263 (363)
141 3gyb_A Transcriptional regulat 21.1 3.2E+02 0.011 21.8 7.5 75 126-214 101-175 (280)
142 2nly_A BH1492 protein, diverge 20.9 3.9E+02 0.013 22.7 11.7 76 125-218 79-154 (245)
143 2nql_A AGR_PAT_674P, isomerase 20.5 3.3E+02 0.011 24.1 8.0 102 97-216 124-237 (388)
144 2nyt_A Probable C->U-editing e 20.5 1.4E+02 0.0048 24.6 5.1 49 163-221 92-146 (190)
145 4hv4_A UDP-N-acetylmuramate--L 20.4 3.9E+02 0.013 24.6 8.7 100 124-239 355-459 (494)
146 2egu_A Cysteine synthase; O-ac 20.4 2.4E+02 0.0083 24.0 6.9 61 168-239 76-136 (308)
147 2ife_A Protein (translation in 20.3 1.1E+02 0.0038 22.8 4.0 40 169-214 31-73 (100)
148 3dbi_A Sugar-binding transcrip 20.2 3.8E+02 0.013 22.3 8.2 78 125-214 163-241 (338)
149 2kln_A Probable sulphate-trans 20.1 2.2E+02 0.0074 20.8 5.8 86 127-233 29-121 (130)
150 3hcw_A Maltose operon transcri 20.1 3.6E+02 0.012 21.9 10.5 73 127-213 115-187 (295)
No 1
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A*
Probab=100.00 E-value=1.1e-69 Score=514.76 Aligned_cols=223 Identities=44% Similarity=0.817 Sum_probs=200.2
Q ss_pred hhhhhhhhcCceeeeeeceeeeCCcEEEeeeeeeecCCccccCccccccccCCCCCCCCCCccccccccchhhcc--Ccc
Q 026236 2 GVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTS--ASL 79 (241)
Q Consensus 2 ~Ly~~f~~~D~~l~EINPL~~~~g~~~alDak~~iDdnA~fR~~e~~~~~~~~~~~~r~~~~~e~~~~e~~~~~g--~~l 79 (241)
+||++|.++|++++|||||+++.++++|+|+|+.|||||+||||+.|+++++|.+|.|+.+|+|.++.|++++++ +.|
T Consensus 187 ~L~~lf~d~d~~~lEINPLvvt~~gv~AlDAki~lDDnA~fR~~~~~~~~~~~~~~~~~~~~~E~~~~e~~a~~~~~~~l 266 (425)
T 3mwd_A 187 GLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKL 266 (425)
T ss_dssp HHHHHHHHTTEEEEEEEEEEEETTEEEECCEEEEEEGGGHHHHHHHHCSCCCCCCSSSCCCHHHHHHHHHHHTSSSEEEE
T ss_pred HHHHHHHhCCccEEEeeeeEEcCCceEEEeceeecccchhhhChhhhhhhhccccccccCChhhhhhhhhhhhhhhccCc
Confidence 799999999999999999999644599999999999999999999999888888899999999999988887754 248
Q ss_pred ceEEecCCccEEEEecCchhHHHHHHHHHhhccCC--CCcceeccCCCCCHHHHHHH----HHHHhhcccCCCCcceEEE
Q 026236 80 KFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYAS--ELGNYAEYSGAPNEEEVLQY----ARVVIDCATADPDGRKRAL 153 (241)
Q Consensus 80 ~yv~L~~dG~Ig~mvnGaGlaMatmD~i~~~~~gg--~pANFlD~GG~a~~~~v~~a----~~iil~~~~~~~~~~~i~i 153 (241)
||+.| |||||||||||||+|+|||+|+++ || +||||||+||+|++++|+++ |+++++| +++++|||
T Consensus 267 ~yv~l--dG~Ig~mvNGaGlamat~D~i~~~--Gg~~~pANflD~gG~a~~e~v~~~~~~~l~ii~~d----~~vk~i~v 338 (425)
T 3mwd_A 267 TLLNP--KGRIWTMVAGGGASVVYSDTICDL--GGVNELANYGEYSGAPSEQQTYDYAKTILSLMTRE----KHPDGKIL 338 (425)
T ss_dssp EESCT--TCSEEECCBSHHHHHHHHHHHHHT--TCGGGBCEEEEEESCCCHHHHHHHHHHHHHHTTSS----CCTTCEEE
T ss_pred cEEec--CCeEEEEecCchHHHHHHHHHHHc--CCCcCCcceEEecCCCCHHHHHHHHHHHHHHHhcC----CCCCEEEE
Confidence 89998 999999999999999999999999 88 79999999999999999987 6777666 55556899
Q ss_pred EEeccccccccHHHHH---HHHHHHHHHhhhhhcccceeEEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHH
Q 026236 154 LIGGGIANFTDVATTF---NGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGIC 230 (241)
Q Consensus 154 nI~GGI~n~T~~d~iA---~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav 230 (241)
|||||| ||||.|| +||++|++++...+...++||||||+|||+++|+++|++..+++|+|+++|+++++|+++|
T Consensus 339 nIfGGI---~~cd~vA~t~~GIi~A~~~~~~~~~~~~~PivVRl~Gtn~~eg~~il~~~g~~lgip~~~~gpe~~~~~i~ 415 (425)
T 3mwd_A 339 IIGGSI---ANFTNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIPIHVFGTETHMTAIV 415 (425)
T ss_dssp EECBCB---CSSSCHHHHHHHHHHHHHHTHHHHHHTTEEEEEECBSTTHHHHHHHHHHHHHHHTCCEEEECTTSCTTHHH
T ss_pred EecCCc---ccHHHHHHHHhHHHHHHHHhhhccccCCCcEEEECCcCCHHHHHHHHHhCCcccCCceEEeCccchHHHHH
Confidence 999999 6888888 9999999998543333589999999999999998888877777889999999999999999
Q ss_pred HHHHH
Q 026236 231 KQAID 235 (241)
Q Consensus 231 ~~av~ 235 (241)
.+|++
T Consensus 416 ~~a~~ 420 (425)
T 3mwd_A 416 GMALG 420 (425)
T ss_dssp HHHTT
T ss_pred HHHhc
Confidence 99975
No 2
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=2e-67 Score=530.98 Aligned_cols=224 Identities=44% Similarity=0.812 Sum_probs=202.0
Q ss_pred hhhhhhhhcCceeeeeeceeeeCCcEEEeeeeeeecCCccccCccccccccCCCCCCCCCCccccccccchhhcc--Ccc
Q 026236 2 GVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTS--ASL 79 (241)
Q Consensus 2 ~Ly~~f~~~D~~l~EINPL~~~~g~~~alDak~~iDdnA~fR~~e~~~~~~~~~~~~r~~~~~e~~~~e~~~~~g--~~l 79 (241)
+||++|.++|++++|||||++++++++|||+|++|||||+||||++|.++++|.+|.|+.+|+|.++.|+++|++ +.|
T Consensus 187 ~Ly~lf~d~d~t~lEINPLvvt~dgv~ALDAKi~lDDnA~fR~~~~~~~~~~~~~~~~~~~~~E~~~~e~~ak~~a~~~l 266 (829)
T 3pff_A 187 GLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKL 266 (829)
T ss_dssp HHHHHHHHTTEEEEEEEEEEEETTEEEECCCEEEEEGGGHHHHHHHHCSCCCCCCSSCCCCHHHHHHHHHHHTSSSEEEE
T ss_pred HHHHHHHhCCccEEEeeceEecCCceEEEeceeeeccchhhhCchhhhhhhccccccccCChhhhhhhhhhhhhccccCc
Confidence 799999999999999999999644599999999999999999999999888888899999999999989888765 348
Q ss_pred ceEEecCCccEEEEecCchhHHHHHHHHHhhccCC--CCcceeccCCCCCHHHHHHH----HHHHhhcccCCCCcceEEE
Q 026236 80 KFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYAS--ELGNYAEYSGAPNEEEVLQY----ARVVIDCATADPDGRKRAL 153 (241)
Q Consensus 80 ~yv~L~~dG~Ig~mvnGaGlaMatmD~i~~~~~gg--~pANFlD~GG~a~~~~v~~a----~~iil~~~~~~~~~~~i~i 153 (241)
||+.| |||||||||||||+|+|||+|+++ || +||||||+||+|+.++|+++ |+++++| +++++|||
T Consensus 267 ~yv~l--dG~Ig~mvNGaGlamaTmD~I~~~--Gg~~~pANFlDvGGga~~e~v~~~~~~~l~ii~~d----~~vk~ilv 338 (829)
T 3pff_A 267 TLLNP--KGRIWTMVAGGGASVVYSDTICDL--GGVNELANYGEYSGAPSEQQTYDYAKTILSLMTRE----KHPDGKIL 338 (829)
T ss_dssp EESCT--TCSEEECCBSHHHHHHHHHHHHHT--TCTTTBCEEEEEESCCCHHHHHHHHHHHHHHTTSS----CCTTCEEE
T ss_pred cEEec--CCeEEeeccCchHHHHHHHHHHHc--CCCCCCceeEEecCCCCHHHHHHHHHHHHHHHhcC----CCCCEEEE
Confidence 89988 999999999999999999999999 88 79999999999999999999 5555555 55666899
Q ss_pred EEeccccccccHHHHH---HHHHHHHHHhhhhhcccceeEEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHH
Q 026236 154 LIGGGIANFTDVATTF---NGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGIC 230 (241)
Q Consensus 154 nI~GGI~n~T~~d~iA---~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav 230 (241)
|||||| ||||.|| +||++|++++...+...++||||||+|||+++|+++|++..+++|+||++|+++++|+++|
T Consensus 339 NIfGGI---~~cd~VA~tf~GIi~A~k~~~~~~~~~~vPiVVRl~GtN~eeg~~il~~~g~~lgl~i~v~g~e~~mt~iv 415 (829)
T 3pff_A 339 IIGGSI---ANFTNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIPIHVFGTETHMTAIV 415 (829)
T ss_dssp EECBCB---CSSCCHHHHHHHHHHHHHHHHHHHHHTTEEEEEECBSTTHHHHHHHHHHHHHHHCCCEEEECTTSCTTHHH
T ss_pred EecCCc---cchHHHHHHHhHHHHHHHHhhhhcccCCceEEEECCCCCHHHHHHHHHhCccccCCcEEEeCCcccHHHHH
Confidence 999999 5788787 9999999998543333589999999999999999988888888999999999999999999
Q ss_pred HHHHHH
Q 026236 231 KQAIDC 236 (241)
Q Consensus 231 ~~av~~ 236 (241)
.+|++.
T Consensus 416 ~~a~~~ 421 (829)
T 3pff_A 416 GMALGH 421 (829)
T ss_dssp HHHHTS
T ss_pred HHHhcc
Confidence 999875
No 3
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=100.00 E-value=3e-60 Score=445.09 Aligned_cols=204 Identities=23% Similarity=0.316 Sum_probs=181.3
Q ss_pred hhhhhhhhcCceeeeeeceee-eCCcEEEeeeeeeecCCccccCccccccccCCCCCCCCCCccccccccchhhccCccc
Q 026236 2 GVFAVFQDLDFSFIEMNPFTL-VNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLK 80 (241)
Q Consensus 2 ~Ly~~f~~~D~~l~EINPL~~-~~g~~~alDak~~iDdnA~fR~~e~~~~~~~~~~~~r~~~~~e~~~~e~~~~~g~~l~ 80 (241)
+||++|.++|++++|||||++ .+|+++|+|+|+.+||||+||||++.. ++. .++.+|+|.+++ +++ |+
T Consensus 183 ~l~~~~~~~d~~~lEINPl~~~~~g~~~alDaki~~dd~a~~r~~~~~~-~~~----~~~~~~~e~~a~----~~~--l~ 251 (388)
T 2nu8_B 183 GLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQPDLRE-MRD----QSQEDPREAQAA----QWE--LN 251 (388)
T ss_dssp HHHHHHHHTTEEEEEEEEEEEETTSCEEESCCEEEECGGGGGGCHHHHH-HCC----GGGSCHHHHHHH----HTT--CE
T ss_pred HHHHHHHhCCEEEEEecceEEcCCCCEEEEeeEEEeCCchhccCcchhh-hcC----ccccChhHHHHH----Hhc--CC
Confidence 699999999999999999999 588999999999999999999998643 221 134455555443 345 77
Q ss_pred eEEecCCccEEEEecCchhHHHHHHHHHhhccCCCCcceeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEecccc
Q 026236 81 FTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIA 160 (241)
Q Consensus 81 yv~L~~dG~Ig~mvnGaGlaMatmD~i~~~~~gg~pANFlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~ 160 (241)
|+.| +||||||+||||++|+|||+|+++ ||+||||||+||+|+.++++++++++++| |++ +++||||||||
T Consensus 252 yv~l--~G~Ig~~~nGaGl~m~t~D~i~~~--Gg~~aNflD~gG~a~~~~~~~~~~~il~d--~~v--~~ilvni~ggi- 322 (388)
T 2nu8_B 252 YVAL--DGNIGCMVNGAGLAMGTMDIVKLH--GGEPANFLDVGGGATKERVTEAFKIILSD--DKV--KAVLVNIFGGI- 322 (388)
T ss_dssp EEEC--SSSEEEEESSHHHHHHHHHHHHHT--TCCBCEEEECCSCCCHHHHHHHHHHHHTS--TTC--CEEEEEEESCS-
T ss_pred ccCC--CCEEEEEeCCCchhhhhhHHHHHc--CCCcCceeEecCCCCHHHHHHHHHHHhcC--CCC--CEEEEEecCCc-
Confidence 9999 999999999999999999999999 99999999999999999999999999998 555 56899999999
Q ss_pred ccccHHHHHHHHHHHHHHhhhhhcccceeEEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHhhh
Q 026236 161 NFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIMS 239 (241)
Q Consensus 161 n~T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~~~~~ 239 (241)
|+||.+|+||++|+++++ .++|||||+.|||+++| +++|+++|+|++.+ ++|++|++++++++++
T Consensus 323 --~~~~~vA~gii~a~~~~~-----~~~pivvrl~G~n~~~g----~~~l~~~g~~~~~~---~~~~~aa~~~v~~~~~ 387 (388)
T 2nu8_B 323 --VRCDLIADGIIGAVAEVG-----VNVPVVVRLEGNNAELG----AKKLADSGLNIIAA---KGLTDAAQQVVAAVEG 387 (388)
T ss_dssp --SCHHHHHHHHHHHHHHHT-----CCSCEEEEEESTTHHHH----HHHHHTTCSSEEEC---SSHHHHHHHHHHHTTT
T ss_pred --CCchHHHHHHHHHHHhcC-----CCCeEEEEeCCCCHHHH----HHHHHHCCCceecC---CCHHHHHHHHHHHhhc
Confidence 699999999999999985 48999999999999999 88888999999954 5999999999999864
No 4
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=100.00 E-value=7.5e-60 Score=443.51 Aligned_cols=203 Identities=25% Similarity=0.354 Sum_probs=179.8
Q ss_pred hhhhhhhhcCceeeeeeceee-eCCcEEEeeeeeeecCCccccCccccccccCCCCCCCCCCccccccccch-hhccCcc
Q 026236 2 GVFAVFQDLDFSFIEMNPFTL-VNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLD-EKTSASL 79 (241)
Q Consensus 2 ~Ly~~f~~~D~~l~EINPL~~-~~g~~~alDak~~iDdnA~fR~~e~~~~~~~~~~~~r~~~~~e~~~~e~~-~~~g~~l 79 (241)
+||++|.++|++++|||||++ .+|+++|+|+|+.+||||+||||+++. .|+.+++++ .|.+ ++++ |
T Consensus 190 ~l~~l~~~~d~~~lEINPl~~~~~g~~~alDaki~~ddnA~~r~~~~~~--------~~d~~~~~~--~e~~a~~~~--l 257 (395)
T 2fp4_B 190 KLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFA--------MDDKSENEP--IENEAAKYD--L 257 (395)
T ss_dssp HHHHHHHHTTEEEEEEEEEEECTTSCEEECSEEEEECGGGGGGCHHHHT--------TCCCTTSCH--HHHHHHHTT--C
T ss_pred HHHHHhhhCCeEEEEeeeEEEcCCCCEEEEEeEEEecccccccCcchhh--------hcCCCccCh--hhhhHHHcC--C
Confidence 689999999999999999999 578999999999999999999999864 244443322 1222 3355 7
Q ss_pred ceEEecCCccEEEEecCchhHHHHHHHHHhhccCCCCcceeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEeccc
Q 026236 80 KFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGI 159 (241)
Q Consensus 80 ~yv~L~~dG~Ig~mvnGaGlaMatmD~i~~~~~gg~pANFlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI 159 (241)
+|+.| +||||||+|||||+|+|||+|+++ ||+||||||+||+|+.++++++|+++++| |++ +++||||||||
T Consensus 258 ~yv~l--~G~Ig~~~nGaGlam~t~D~i~~~--Gg~paNflDvgG~a~~e~~~~al~~il~d--~~v--~~ilvni~ggi 329 (395)
T 2fp4_B 258 KYIGL--DGNIACFVNGAGLAMATCDIIFLN--GGKPANFLDLGGGVKESQVYQAFKLLTAD--PKV--EAILVNIFGGI 329 (395)
T ss_dssp EEEEC--SSSEEEEESSHHHHHHHHHHHHHT--TCCBCEEEECCSSCCHHHHHHHHHHHHHC--TTC--CEEEEEEEESS
T ss_pred ceecc--CCeEEEEecCchHHHHHHHHHHHc--CCCcCCcEEECCCCCHHHHHHHHHHHhCC--CCC--CEEEEEecCCc
Confidence 79999 999999999999999999999999 99999999999999999999999999998 555 55899999999
Q ss_pred cccccHHHHHHHHHHHHHHhhhhhcccceeEEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHhhh
Q 026236 160 ANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIMS 239 (241)
Q Consensus 160 ~n~T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~~~~~ 239 (241)
++||.+|+||++|+++++ .++|||||+.|||+++| +++|+++|+|++.|. +|++|+++++++++.
T Consensus 330 ---~~~d~vA~gii~a~~~~~-----~~~Pivvrl~G~n~~~g----~~~L~~~gl~~~~~~---~~~~Aa~~~v~~~~~ 394 (395)
T 2fp4_B 330 ---VNCAIIANGITKACRELE-----LKVPLVVRLEGTNVHEA----QNILTNSGLPITSAV---DLEDAAKKAVASVTK 394 (395)
T ss_dssp ---SCHHHHHHHHHHHHHHHT-----CCSCEEEEEEETTHHHH----HHHHHHTCSCCEECS---SHHHHHHHHHHTTC-
T ss_pred ---cCcHHHHHHHHHHHHhcC-----CCCeEEEEcCCCCHHHH----HHHHHHCCCceEeCC---CHHHHHHHHHHHhhc
Confidence 699999999999999985 48999999999999999 888889999999664 999999999998764
No 5
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=100.00 E-value=2.6e-53 Score=399.20 Aligned_cols=203 Identities=22% Similarity=0.292 Sum_probs=177.9
Q ss_pred hhhhhhhhcCceeeeeeceee-eCCcEEEeeeeeeecCCccccCccccccccCCCCCCCCCCccccccccchhhccCccc
Q 026236 2 GVFAVFQDLDFSFIEMNPFTL-VNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLK 80 (241)
Q Consensus 2 ~Ly~~f~~~D~~l~EINPL~~-~~g~~~alDak~~iDdnA~fR~~e~~~~~~~~~~~~r~~~~~e~~~~e~~~~~g~~l~ 80 (241)
+||++|.++|++++|||||++ .+|+++|+|+|+.+||||.||||+++. ++. .++.+|+|.++ .++| ||
T Consensus 174 ~l~~l~~~~~~~~lEINPL~~~~~g~~~alDaki~~ddnA~~r~~~~~~-~~~----~~~~~~~e~~a----~~~~--l~ 242 (397)
T 3ufx_B 174 ALYRAYEGVDASIAEINPLVVTTDGGIVAADAKIVLDDNALFRHPDLAE-LRE----VEAEHPLEVEA----SNYG--FA 242 (397)
T ss_dssp HHHHHHHHTTEEEEEEEEEEEETTSCEEESSCEEEECGGGGGGCHHHHT-THH----HHCSSHHHHHH----HHTT--CE
T ss_pred HHHHHHHcCCccEEEeeceEECCCCCEEEEEeEEEecCcchhcchhhhh-hcC----cccCCHhHHHH----HHcC--CC
Confidence 799999999999999999999 578999999999999999999998753 211 13455555443 2355 77
Q ss_pred eEEecCCccEEEEecCchhHHHHHHHHHhhccCCCCcceeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEecccc
Q 026236 81 FTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIA 160 (241)
Q Consensus 81 yv~L~~dG~Ig~mvnGaGlaMatmD~i~~~~~gg~pANFlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~ 160 (241)
|+.| +||||||+||||++|+|||+|..+ ||+||||+|+||+++++++++|++++++| |+++ +|+|||||||
T Consensus 243 yv~l--~g~I~ii~Ng~Gl~~~t~D~i~~~--G~~~aN~lD~gG~a~~e~~~~al~~~l~d--~~v~--~ilv~i~ggi- 313 (397)
T 3ufx_B 243 YVKL--DGNIGIIGNGAGLVMYTLDLVNRV--GGKPANFLDIGGGAKADVVYNALKVVLKD--PDVK--GVFINIFGGI- 313 (397)
T ss_dssp EEEC--SSSEEEEESSHHHHHHHHHHHHHT--TCCBSEEEECCSCCCHHHHHHHHHHHHTC--TTCC--EEEEEEEEEE-
T ss_pred cccC--CCcEEEEecCccHHHHHHHHHHHc--CCCcCCcEecCCCCCHHHHHHHHHHHHcC--CCCC--EEEEECCCCC-
Confidence 9999 999999999999999999999999 99999999999999999999999999998 5555 5789999999
Q ss_pred ccccHHHHHHHHHHHHHHhhhhhcccceeEEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHhhhc
Q 026236 161 NFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIMSA 240 (241)
Q Consensus 161 n~T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~~~~~~ 240 (241)
|+|+++|+||++|+++.+ .++|||+|+.|+|.+++ +++|+++|+|. | +++++||++++++++.+
T Consensus 314 --~~~~~vA~~i~~a~~~~~-----~~kPvvv~~~G~~~~~~----~~~l~~~gip~--~---~~~e~Aa~~~~~l~~~a 377 (397)
T 3ufx_B 314 --TRADEVAKGVIRALEEGL-----LTKPVVMRVAGTAEEEA----KKLLEGKPVYM--Y---PTSIEAAKVTVAMKGGA 377 (397)
T ss_dssp --EESHHHHHHHHHHHTTTC-----CCSCEEEEEEEECHHHH----HHHTTTSSEEE--C---SSHHHHHHHHHHSCCSC
T ss_pred --CCHHHHHHHHHHHHHhhC-----CCCcEEEEccCCCHHHH----HHHHHhCCCcc--c---CCHHHHHHHHHHHHHHh
Confidence 799999999999999875 38999999999999999 88889999654 4 49999999999988754
No 6
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=99.85 E-value=3.8e-21 Score=183.13 Aligned_cols=135 Identities=19% Similarity=0.258 Sum_probs=119.0
Q ss_pred cceEEecCCccEEEEecCchhHHHHHHHHHhhccCCC---------------------CcceeccCCCCCHHHHHHHHHH
Q 026236 79 LKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASE---------------------LGNYAEYSGAPNEEEVLQYARV 137 (241)
Q Consensus 79 l~yv~L~~dG~Ig~mvnGaGlaMatmD~i~~~~~gg~---------------------pANFlD~GG~a~~~~v~~a~~i 137 (241)
|.| .+..+++|++|+||||++|.++|++..+ |++ |+||+|+||.++++.+.+++++
T Consensus 286 l~~-~~~~g~rvaiitngGG~~~laaD~~~~~--Gl~l~~l~~~t~~~L~~~lp~~~~~~NPlDl~g~a~~~~~~~al~~ 362 (457)
T 2csu_A 286 FSQ-PLPRGNKVAIMTNAGGPGVLTADELDKR--GLKLATLEEKTIEELRSFLPPMAAVKNPVDMIASARGEDYYRTAKL 362 (457)
T ss_dssp TTS-CCCSSSEEEEEESCHHHHHHHHHHHHTT--TCEECCCCHHHHHHHHHHSCTTCEESSEEECCTTCCHHHHHHHHHH
T ss_pred hcC-CCCCCCcEEEEECCHHHHHHHHHHHHHc--CCCCCCCCHHHHHHHHHhCccccccCCCeeCCCCCCHHHHHHHHHH
Confidence 557 7766899999999999999999999999 888 8999999999999999999999
Q ss_pred HhhcccCCCCcceEEEEE----eccccccccHHHHHHHHHHHHHHhhhhhcccceeEEE-EecCCChhHHHHHHHHHHHH
Q 026236 138 VIDCATADPDGRKRALLI----GGGIANFTDVATTFNGIIRALREKESKLKAARMHIFV-RRGGPNYQTGLAKMRALGEE 212 (241)
Q Consensus 138 il~~~~~~~~~~~i~inI----~GGI~n~T~~d~iA~GIv~A~~~~~~~~~~~~vPiVv-Rl~Gtn~~~g~~~l~~~l~~ 212 (241)
+++| |+++ ++++|+ +||+ .|+.+++++++++++.. .++|+|+ ++.|++.+++ +++|++
T Consensus 363 ~l~d--p~vd--~vlv~~~~~~~Gg~----~~~~~a~~i~~al~~~~-----~~kPvvv~~~~g~~~~~~----~~~L~~ 425 (457)
T 2csu_A 363 LLQD--PNVD--MLIAICVVPTFAGM----TLTEHAEGIIRAVKEVN-----NEKPVLAMFMAGYVSEKA----KELLEK 425 (457)
T ss_dssp HHHS--TTCS--EEEEEEECCCSTTC----CSSHHHHHHHHHHHHHC-----CCCCEEEEEECTTTTHHH----HHHHHT
T ss_pred HhcC--CCCC--EEEEEccccccccC----CchhHHHHHHHHHHHhc-----CCCCEEEEeCCCcchHHH----HHHHHh
Confidence 9998 6665 478888 6777 48999999999999864 3689777 9999999999 889999
Q ss_pred hCCCeEEcCCCCCHHHHHHHHHHHhh
Q 026236 213 LGIPLEVYGPEATMTGICKQAIDCIM 238 (241)
Q Consensus 213 ~gi~i~~~~~~~~m~eav~~av~~~~ 238 (241)
.|+|++ .++++|++.+..+++
T Consensus 426 ~Gip~~-----~spe~Av~al~~l~~ 446 (457)
T 2csu_A 426 NGIPTY-----ERPEDVASAAYALVE 446 (457)
T ss_dssp TTCCEE-----SSHHHHHHHHHHHHH
T ss_pred CCCCcc-----CCHHHHHHHHHHHHH
Confidence 999877 489999998887765
No 7
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}
Probab=97.79 E-value=0.0002 Score=68.77 Aligned_cols=133 Identities=14% Similarity=0.055 Sum_probs=92.6
Q ss_pred CccEEEEecCchhHHHHHHHHHhhccCCCCc----------------ceeccCC------C----CCHHHHHHHHHHHhh
Q 026236 87 KGRIWTMVAGGGASVIYADTVGDLGYASELG----------------NYAEYSG------A----PNEEEVLQYARVVID 140 (241)
Q Consensus 87 dG~Ig~mvnGaGlaMatmD~i~~~~~gg~pA----------------NFlD~GG------~----a~~~~v~~a~~iil~ 140 (241)
..+|+++.||+|++..+.|.+.. | . +.+ +..|++. + .+++...++++.++.
T Consensus 249 G~rvaivtn~Gg~gvlaaD~~~~-g-l-~l~~ls~~t~~~l~~~~~~~l~~~lp~~~s~~NPvD~~d~~~~~~al~~~l~ 325 (480)
T 3dmy_A 249 SGFICGLYTGGTLAAEAAGLLAG-H-L-GVEADDTHQHGMMLDADSHQIIDLGDDFYTVGRPHPMIDPTLRNQLIADLGA 325 (480)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHH-H-T-TCC---CCGGGEEEEETTEEEEETTSHHHHTTSCCTTTCCHHHHHHHHHGGG
T ss_pred CCeEEEEECCHHHHHHHHHHHHh-C-C-CCCCCCHHHHhhhhhhhhccHHHhCcchhhccCCcCCCCHHHHHHHHHHHhc
Confidence 56799999999999999999877 3 2 222 5556553 1 167889999999999
Q ss_pred cccCCCCcceEEE-EE--eccccccccH-HHHHHHHHHHHHHhhhhhccccee--EEEEecCCC-hhHHHHHHHHHHHHh
Q 026236 141 CATADPDGRKRAL-LI--GGGIANFTDV-ATTFNGIIRALREKESKLKAARMH--IFVRRGGPN-YQTGLAKMRALGEEL 213 (241)
Q Consensus 141 ~~~~~~~~~~i~i-nI--~GGI~n~T~~-d~iA~GIv~A~~~~~~~~~~~~vP--iVvRl~Gtn-~~~g~~~l~~~l~~~ 213 (241)
| |++.+ +++ .+ .++. ++. +.+|+.|+++.++.. .++| +++-+.|+. ..++.+--+++|++.
T Consensus 326 D--~~vd~--vlv~~v~~~~~~---~d~~~~~a~ai~~~~~~~~-----~~kp~v~v~~~~g~~~~~~~~~~~~~~L~~a 393 (480)
T 3dmy_A 326 K--PQVRV--LLLDVVIGFGAT---ADPAASLVSAWQKACAARL-----DNQPLYAIATVTGTERDPQCRSQQIATLEDA 393 (480)
T ss_dssp C--TTEEE--EEEEEECSTTSC---SCHHHHHHHHHHHHHHTSC-----TTSCCEEEEEEESCTTSTTCHHHHHHHHHHT
T ss_pred C--CCCCE--EEEEeecCCCCC---CChHHHHHHHHHHHHHhcc-----CCCCeEEEEEecCcccchhhHHHHHHHHHhC
Confidence 8 66654 444 34 3444 464 889999999877542 1366 666777874 333311126889999
Q ss_pred CCCeEEcCCCCCHHHHHHHHHHHhhh
Q 026236 214 GIPLEVYGPEATMTGICKQAIDCIMS 239 (241)
Q Consensus 214 gi~i~~~~~~~~m~eav~~av~~~~~ 239 (241)
|+|.+ .+.++|++.+..+.+.
T Consensus 394 GIp~f-----~spe~Av~a~~~l~~~ 414 (480)
T 3dmy_A 394 GIAVV-----SSLPEATLLAAALIHP 414 (480)
T ss_dssp TCEEC-----SSHHHHHHHHHHHTSC
T ss_pred CCccc-----CCHHHHHHHHHHHHhc
Confidence 99865 3889999888777643
No 8
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*
Probab=96.67 E-value=0.017 Score=51.94 Aligned_cols=132 Identities=12% Similarity=0.112 Sum_probs=94.2
Q ss_pred CccEEEEecCchhHHHHHHHHHhhccCCCCcceeccCCCCC-HHHHHHHHHHHhhcccCCCCcceEEEEEeccccccccH
Q 026236 87 KGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPN-EEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDV 165 (241)
Q Consensus 87 dG~Ig~mvnGaGlaMatmD~i~~~~~gg~pANFlD~GG~a~-~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~n~T~~ 165 (241)
.|+||++.--++++...+|.+... |--...|.=+||.+. .-.+...++.+.+| |+++++.+++-++| +-
T Consensus 152 ~G~va~vSqSG~l~~~~~~~~~~~--g~G~S~~vs~G~~~~~~~~~~d~l~~~~~D--p~T~~I~l~~E~~g------~~ 221 (305)
T 2fp4_A 152 KGRIGIVSRSGTLTYEAVHQTTQV--GLGQSLCVGIGGDPFNGTDFTDCLEIFLND--PATEGIILIGEIGG------NA 221 (305)
T ss_dssp EEEEEEEESCSHHHHHHHHHHHHT--TCCEEEEEECCSSSSCSCCHHHHHHHHHHC--TTCCEEEEEEESSS------SH
T ss_pred CCCEEEEecchHHHHHHHHHHHhc--CCCeeEEeccCCCcCCCCCHHHHHHHHhcC--CCCcEEEEEEecCC------ch
Confidence 599999999999999999999999 556788999999874 35678888899998 77776544444443 33
Q ss_pred HHHHHHHHHHHHHhhhhhcccceeEEEEecCCChhH----------------HHHHHHHHHHHhCCCeEEcCCCCCHHHH
Q 026236 166 ATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQT----------------GLAKMRALGEELGIPLEVYGPEATMTGI 229 (241)
Q Consensus 166 d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~----------------g~~~l~~~l~~~gi~i~~~~~~~~m~ea 229 (241)
.+-++-++++.++.. .++|||+=..|..... .-+.....+++.|+ .+..+-++|-++
T Consensus 222 e~~~~~f~~~~~~~~-----~~KPVv~~k~G~s~~~g~~~~Htgal~~~~~g~~~~~~aa~~~aGv--~~v~~~~el~~~ 294 (305)
T 2fp4_A 222 EENAAEFLKQHNSGP-----KSKPVVSFIAGLTAPPGRRMGHAGAIIAGGKGGAKEKITALQSAGV--VVSMSPAQLGTT 294 (305)
T ss_dssp HHHHHHHHHHHSCST-----TCCCEEEEEECTTCCTTCCCSSTTCCCBTTBCCHHHHHHHHHHTTC--EECSSTTCHHHH
T ss_pred hhHHHHHHHHHHHhc-----CCCCEEEEEecCCccccccccchhhhhccCCccHHHHHHHHHHCCC--eEeCCHHHHHHH
Confidence 345566666654422 3799999888876521 12344677889997 444555678888
Q ss_pred HHHHHH
Q 026236 230 CKQAID 235 (241)
Q Consensus 230 v~~av~ 235 (241)
++.+++
T Consensus 295 ~~~~~~ 300 (305)
T 2fp4_A 295 IYKEFE 300 (305)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887765
No 9
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*
Probab=95.77 E-value=0.093 Score=47.96 Aligned_cols=127 Identities=15% Similarity=0.115 Sum_probs=88.1
Q ss_pred CccEEEEecCchhHHHHHHHHHhhccCCCCcceeccCCC--CCHHHHHHHHHHHhhcccCCCCcceEEEE-Eeccccccc
Q 026236 87 KGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGA--PNEEEVLQYARVVIDCATADPDGRKRALL-IGGGIANFT 163 (241)
Q Consensus 87 dG~Ig~mvnGaGlaMatmD~i~~~~~gg~pANFlD~GG~--a~~~~v~~a~~iil~~~~~~~~~~~i~in-I~GGI~n~T 163 (241)
.|+||++.--++++...+|.+... |--...|.-+||. +. -.+...++.+.+| |+.++ |++- =.||+.
T Consensus 168 ~G~vgivSqSG~l~~~i~~~~~~~--g~G~S~~VsiGn~~~~d-~~~~D~l~~~~~D--p~T~~--I~l~gEi~g~~--- 237 (334)
T 3mwd_B 168 PGSVAYVSRSGGMSNELNNIISRT--TDGVYEGVAIGGDRYPG-STFMDHVLRYQDT--PGVKM--IVVLGEIGGTE--- 237 (334)
T ss_dssp CCSEEEEESCHHHHHHHHHHHHHH--SSCEEEEEECCSSSSCS-SCHHHHHHHHHTC--TTCCE--EEEEEESSSSH---
T ss_pred CCCEEEEeCchHHHHHHHHHHHhc--CCCeEEEEECCCCccCC-CCHHHHHHHHhcC--CCCCE--EEEEEecCChH---
Confidence 599999999999999999999999 4456778999997 43 4477888899888 66665 3332 146662
Q ss_pred cHHHHHHHHHHHHHHhhhhhcccceeEEEEecCCChhH-------------------HHHHHHHHHHHhCCCeEEcCCCC
Q 026236 164 DVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQT-------------------GLAKMRALGEELGIPLEVYGPEA 224 (241)
Q Consensus 164 ~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~-------------------g~~~l~~~l~~~gi~i~~~~~~~ 224 (241)
+ +-.++++++.. .++|||+=..|..+.. .-+...+.++++|+. +..+-+
T Consensus 238 e-----~~~~~~~r~~~-----~~KPVV~~kaGrs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~~aGv~--~v~~~~ 305 (334)
T 3mwd_B 238 E-----YKICRGIKEGR-----LTKPIVCWCIGTCATMFSSEVQFGHAGACANQASETAVAKNQALKEAGVF--VPRSFD 305 (334)
T ss_dssp H-----HHHHHHHHTTS-----CCSCEEEEEECTTCC----------------CGGGSHHHHHHHHHHTTCB--CCSSGG
T ss_pred H-----HHHHHHHHhhc-----CCCCEEEEEcCCCcccccccccccchhhhccCCCccHHHHHHHHHHcCCe--EcCCHH
Confidence 2 45667777643 3799999998887651 011346778889973 333334
Q ss_pred CHHHHHHHHHH
Q 026236 225 TMTGICKQAID 235 (241)
Q Consensus 225 ~m~eav~~av~ 235 (241)
+|-++++.+++
T Consensus 306 el~~~~~~~~~ 316 (334)
T 3mwd_B 306 ELGEIIQSVYE 316 (334)
T ss_dssp GHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 56666666654
No 10
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*
Probab=95.52 E-value=0.075 Score=47.06 Aligned_cols=125 Identities=13% Similarity=0.100 Sum_probs=81.8
Q ss_pred CccEEEEecCchhHHHHHHHHHhhccCCCCcceeccCCCCC-HHHHHHHHHHHhhcccCCCCcceEEEEEeccccccccH
Q 026236 87 KGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPN-EEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDV 165 (241)
Q Consensus 87 dG~Ig~mvnGaGlaMatmD~i~~~~~gg~pANFlD~GG~a~-~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~n~T~~ 165 (241)
.|+||++.--++++...+|.+... |--...|.-+||.+. .-.....++.+.+| |+++++.+++-++| +-
T Consensus 144 ~G~i~~vsqSG~l~~~~~~~~~~~--g~G~s~~vs~G~~~~~~~~~~d~l~~l~~D--~~t~~I~l~~E~~~------~~ 213 (288)
T 2nu8_A 144 PGKVGIVSRSGTLTYEAVKQTTDY--GFGQSTCVGIGGDPIPGSNFIDILEMFEKD--PQTEAIVMIGEIGG------SA 213 (288)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHT--TCCEEEEEECCSSSSCSSCHHHHHHHHHTC--TTCCEEEEEEESSS------SH
T ss_pred CCCEEEEECcHHHHHHHHHHHHhc--CCCEEEEEeeCCCcCCCCCHHHHHHHHhcC--CCCCEEEEEEeeCC------CH
Confidence 599999998888888889999888 546777888999774 24577888899898 77776433333333 33
Q ss_pred HHHHHHHHHHHHHhhhhhcccceeEEEEecCCChhHH----------------HHHHHHHHHHhCCCeEEcCCCCCHHHH
Q 026236 166 ATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTG----------------LAKMRALGEELGIPLEVYGPEATMTGI 229 (241)
Q Consensus 166 d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g----------------~~~l~~~l~~~gi~i~~~~~~~~m~ea 229 (241)
.+.++-.+++ . .++|||+=..|.....| -+.....+++.|+ .+..+-++|-++
T Consensus 214 ~~~~~~~~~~----~-----~~KPVv~~k~G~~~~~g~~~~Htga~~~~~~g~~~~~~aa~~~aGv--~~~~~~~el~~~ 282 (288)
T 2nu8_A 214 EEEAAAYIKE----H-----VTKPVVGYIAGVTAPKGKRMGHAGAIIAGGKGTADEKFAALEAAGV--KTVRSLADIGEA 282 (288)
T ss_dssp HHHHHHHHHH----H-----CCSCEEEEEECTTCCTTCCCSSTTCCCCTTCCCHHHHHHHHHHTTC--EECSSGGGHHHH
T ss_pred HHHHHHHHHh----c-----CCCCEEEEEeCCCCcccccccchhhhhccCCccHHHHHHHHHHCCC--eEeCCHHHHHHH
Confidence 4444545554 2 37999998888765221 2234567888887 333323344444
Q ss_pred HHH
Q 026236 230 CKQ 232 (241)
Q Consensus 230 v~~ 232 (241)
+++
T Consensus 283 ~~~ 285 (288)
T 2nu8_A 283 LKT 285 (288)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 11
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}
Probab=95.22 E-value=0.13 Score=45.84 Aligned_cols=125 Identities=11% Similarity=0.067 Sum_probs=78.3
Q ss_pred CccEEEEecCchhHHHHHHHHHhhccCCCCcceeccCCCCCH-HHHHHHHHHHhhcccCCCCcceEEEEEeccccccccH
Q 026236 87 KGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNE-EEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDV 165 (241)
Q Consensus 87 dG~Ig~mvnGaGlaMatmD~i~~~~~gg~pANFlD~GG~a~~-~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~n~T~~ 165 (241)
.|+||++.--++++...+|.+... |--...|.=+|+.+.. -.....++.+.+| |+++++.+++-++| +-
T Consensus 150 ~G~va~vSqSG~l~~~~~~~~~~~--g~G~s~~vs~G~~~~~~~~~~d~l~~~~~D--~~T~~I~l~~E~~g------~~ 219 (294)
T 2yv1_A 150 EGSVGMVSRSGTLTYEIAHQIKKA--GFGVSTCVGIGGDPIVGLRYKEVLDLFEKD--DETEAIVMIGEIGG------GA 219 (294)
T ss_dssp EEEEEEEESCSHHHHHHHHHHHHT--TCCEEEEEECCSSSSCSSCHHHHHHHHHTC--TTCSEEEEEEESSS------SH
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC--CCCeEEEEeeCCCCCCCCCHHHHHHHHhcC--CCCCEEEEEEeeCC------CH
Confidence 599999999999999999999999 5567889999998842 4577788888888 77776433333333 22
Q ss_pred HHHHHHHHHHHHHhhhhhcccceeEEEEecCCChhHHH----------------HHHHHHHHHhCCCeEEcCCCCCHHHH
Q 026236 166 ATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGL----------------AKMRALGEELGIPLEVYGPEATMTGI 229 (241)
Q Consensus 166 d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g~----------------~~l~~~l~~~gi~i~~~~~~~~m~ea 229 (241)
.+.+ .+.+++ .++|||+=..|..+..|. +.....+++.|+ .+..+-++|-++
T Consensus 220 ~~~~---~~~~~~-------~~KPVv~~k~G~~~~~g~~~sHtgal~~~~~g~~~~~~aa~~~aGv--~~~~~~~el~~~ 287 (294)
T 2yv1_A 220 EEEA---AKFIEK-------MKKPVIGYIAGQSAPEGKRMGHAGAIVEKGKGTAESKMKALEEAGA--YVAKNISDIPKL 287 (294)
T ss_dssp HHHH---HHHHTT-------CSSCEEEEEECC-------------------CCHHHHHHHHHHHTC--EECSSTTHHHHH
T ss_pred HHHH---HHHHHh-------CCCCEEEEEecCCCCccccCCchhhhccCCCCCHHHHHHHHHHCCC--eEeCCHHHHHHH
Confidence 2222 222222 279999988887763331 223566777886 333333344444
Q ss_pred HHHH
Q 026236 230 CKQA 233 (241)
Q Consensus 230 v~~a 233 (241)
++.+
T Consensus 288 ~~~~ 291 (294)
T 2yv1_A 288 LAGI 291 (294)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 12
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}
Probab=95.10 E-value=0.21 Score=47.76 Aligned_cols=121 Identities=10% Similarity=0.018 Sum_probs=87.7
Q ss_pred CCccEEEEecCchhHHHHHHHHHhhccCCCCcceeccCCCC-----CHHHHHHHHHHHhhcccCCCCcceEEEEEecccc
Q 026236 86 PKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAP-----NEEEVLQYARVVIDCATADPDGRKRALLIGGGIA 160 (241)
Q Consensus 86 ~dG~Ig~mvnGaGlaMatmD~i~~~~~gg~pANFlD~GG~a-----~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~ 160 (241)
+.|+||++.--|+++...+|.+... |--...|.-+||.+ ..-.+...++.+.+| |++++ |++-+= ++
T Consensus 111 ~~G~vaivSqSGal~~~i~~~~~~~--g~G~S~~Vs~Gn~~l~~~i~dv~~~D~l~~l~~D--p~T~~--I~ly~E-~~- 182 (480)
T 3dmy_A 111 PEGNIGVIGASGTGIQELCSQIALA--GEGITHAIGLGGRDLSREVGGISALTALEMLSAD--EKSEV--LAFVSK-PP- 182 (480)
T ss_dssp CEEEEEEEESCSHHHHHHHHHHHHT--TCCEEEEEECCTTTTSTTTTTHHHHHHHHHHHTC--TTCCE--EEEEES-CC-
T ss_pred CCCCEEEEeccHHHHHHHHHHHHHc--CCCceEEEEcCCCccccccCCCCHHHHHHHHhcC--CCCCE--EEEEEe-cC-
Confidence 3699999999999999999999999 55678899999984 456788899999998 66654 343222 23
Q ss_pred ccccHHHHHHHHHHHHHHhhhhhcccceeEEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHhh
Q 026236 161 NFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 238 (241)
Q Consensus 161 n~T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~~~~ 238 (241)
-+.+++-++++.+.. ++|||+=..|..+. | +++.|+ .. ..+++|....|.-++.
T Consensus 183 ----~e~~~~~f~~~ar~~-------~KPVV~~k~Grs~~-g-------~r~~Gv--ir---v~~~~el~~~a~~l~~ 236 (480)
T 3dmy_A 183 ----AEAVRLKIVNAMKAT-------GKPTVALFLGYTPA-V-------ARDENV--WF---ASSLDEAARLACLLSR 236 (480)
T ss_dssp ----CHHHHHHHHHHHHHH-------CSCEEEEETTCCCS-S-------SEETTE--EE---ESSHHHHHHHHHHHHH
T ss_pred ----CcHHHHHHHHHHHhC-------CCCEEEEEeCCCCc-c-------cccCCE--EE---ECCHHHHHHHHHHHhc
Confidence 244566677777642 69999998887743 3 456675 32 2478888777765544
No 13
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}
Probab=94.76 E-value=0.12 Score=46.03 Aligned_cols=97 Identities=11% Similarity=0.090 Sum_probs=66.0
Q ss_pred CccEEEEecCchhHHHHHHHHHhhccCCCCcceeccCCCCCH-HHHHHHHHHHhhcccCCCCcceEEEEEeccccccccH
Q 026236 87 KGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNE-EEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDV 165 (241)
Q Consensus 87 dG~Ig~mvnGaGlaMatmD~i~~~~~gg~pANFlD~GG~a~~-~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~n~T~~ 165 (241)
.|+||++.--++++...+|.+... |--...|.=+|+.+.. -.....++.+.+| |+++++.+++-++| +-
T Consensus 151 ~G~va~vSqSG~l~~~~~~~~~~~--g~G~s~~vs~G~~~~~~~~~~d~l~~~~~D--~~T~~I~l~~E~~~------~~ 220 (297)
T 2yv2_A 151 EGGVAVVSRSGTLTYEISYMLTRQ--GIGQSTVIGIGGDPIVGLSFTEALKLFQED--PQTEALVLIGEIGG------DM 220 (297)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHT--TCCEEEEEECCSSSSCSSCHHHHHHHHHTC--TTCSEEEEEECSSS------SH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc--CCCeeEEEeeCCCcCCCCCHHHHHHHHhcC--CCCCEEEEEEeeCC------CH
Confidence 599999999999999999999998 5567889999998842 3577788888888 67765433333222 23
Q ss_pred HHHHHHHHHHHHHhhhhhcccceeEEEEecCCChhH
Q 026236 166 ATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQT 201 (241)
Q Consensus 166 d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~ 201 (241)
.+.+.-.+++ .. .++|||+=..|..+..
T Consensus 221 ~~~~~~~~~~---~~-----~~KPVv~~k~G~s~~~ 248 (297)
T 2yv2_A 221 EERAAEMIKK---GE-----FTKPVIAYIAGRTAPP 248 (297)
T ss_dssp HHHHHHHHHT---TS-----CCSCEEEEESCCC---
T ss_pred HHHHHHHHHh---cc-----CCCCEEEEEeCCCCcc
Confidence 3333333332 22 3799999888877633
No 14
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1
Probab=94.60 E-value=0.3 Score=43.27 Aligned_cols=124 Identities=15% Similarity=0.143 Sum_probs=78.9
Q ss_pred CccEEEEecCchhHHHHHHHHHhhccCCCCcceeccCCCCCH-HHHHHHHHHHhhcccCCCCcceEEEEEeccccccccH
Q 026236 87 KGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNE-EEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDV 165 (241)
Q Consensus 87 dG~Ig~mvnGaGlaMatmD~i~~~~~gg~pANFlD~GG~a~~-~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~n~T~~ 165 (241)
.|+||++.--++++...+|.+... |--...|.-+|+.+.. -.....++.+.+| |+++++.+++-++| +-
T Consensus 144 ~G~va~vsqSG~l~~~~~~~~~~~--g~G~s~~vs~G~~~~~~~~~~d~l~~~~~D--~~t~~I~l~~E~~~------~~ 213 (288)
T 1oi7_A 144 RGRVGIISRSGTLTYEAAAALSQA--GLGTTTTVGIGGDPVIGTTFKDLLPLFNED--PETEAVVLIGEIGG------SD 213 (288)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHT--TCCEEEEEECCSSSCCSSCHHHHHHHHHTC--TTCCEEEEEECSSS------SH
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC--CCCEEEEEeeCCCcCCCCCHHHHHHHHhcC--CCCCEEEEEEeeCC------CH
Confidence 599999999999999999999999 5567889999998842 4577888888888 66765333322222 33
Q ss_pred HHHHHHHHHHHHHhhhhhcccceeEEEEecCCChhHHH----------------HHHHHHHHHhCCCeEEcCCCCCHHHH
Q 026236 166 ATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGL----------------AKMRALGEELGIPLEVYGPEATMTGI 229 (241)
Q Consensus 166 d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g~----------------~~l~~~l~~~gi~i~~~~~~~~m~ea 229 (241)
.+.+.-.+++ . .++|||+=..|.....|. +.....++++|+- . .++++|.
T Consensus 214 ~~~~~~~~~~----~-----~~KPVv~~k~G~~~~~~~~~~Htgal~~~~~g~~~~~~aa~~~aGv~--~---~~~~~el 279 (288)
T 1oi7_A 214 EEEAAAWVKD----H-----MKKPVVGFIGGRSAPKGKRMGHAGAIIMGNVGTPESKLRAFAEAGIP--V---ADTIDEI 279 (288)
T ss_dssp HHHHHHHHHH----H-----CCSCEEEEESCC------------------CCSHHHHHHHHHHHTCC--B---CSSHHHH
T ss_pred HHHHHHHHHh----c-----CCCCEEEEEecCCCCccccCcchhhcccCCCCCHHHHHHHHHHCCCe--E---eCCHHHH
Confidence 3334433333 2 379999988887763331 1235567777763 1 2366655
Q ss_pred HHHHH
Q 026236 230 CKQAI 234 (241)
Q Consensus 230 v~~av 234 (241)
...+.
T Consensus 280 ~~~~~ 284 (288)
T 1oi7_A 280 VELVK 284 (288)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 15
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}
Probab=91.40 E-value=1.3 Score=45.03 Aligned_cols=130 Identities=14% Similarity=0.045 Sum_probs=86.1
Q ss_pred CccEEEEecCchhHHHHHHHHHhhccCCCCcceeccCCCC-CHHHHHHHHHHHhhcccCCCCcceEEEEEeccccccccH
Q 026236 87 KGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAP-NEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDV 165 (241)
Q Consensus 87 dG~Ig~mvnGaGlaMatmD~i~~~~~gg~pANFlD~GG~a-~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~n~T~~ 165 (241)
.|+||++.--++++...+|.+...|. =-..|.-+||.+ .--.+...++.+.+| |++++++.++-+ ||- +
T Consensus 654 ~G~VgiVSqSGal~~~i~~~~~~~g~--G~S~~VsiGnd~~~d~~~~D~L~~l~~D--p~T~~Ivly~Ei-~g~----~- 723 (829)
T 3pff_A 654 PGSVAYVSRSGGMSNELNNIISRTTD--GVYEGVAIGGDRYPGSTFMDHVLRYQDT--PGVKMIVVLGEI-GGT----E- 723 (829)
T ss_dssp CCSEEEEESCHHHHHHHHHHHHHHSS--CEEEEEECCSSSSCSSCHHHHHHHHHTC--TTCCEEEEEEES-SSS----H-
T ss_pred CCcEEEEechhHHHHHHHHHHHHcCC--CeEEEEecCCCCCCCCCHHHHHHHHhhC--CCCCEEEEEEec-Cch----H-
Confidence 69999999999999999999999954 456789999975 234578888899998 777775555554 332 1
Q ss_pred HHHHHHHHHHHHHhhhhhcccceeEEEEecCCChhH---HH----------------HHHHHHHHHhCCCeEEcCCCCCH
Q 026236 166 ATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQT---GL----------------AKMRALGEELGIPLEVYGPEATM 226 (241)
Q Consensus 166 d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~---g~----------------~~l~~~l~~~gi~i~~~~~~~~m 226 (241)
..-..+++++.. .++|||+=..|..+.. +. +...+.++++|+. +..+-+.|
T Consensus 724 ---f~~aA~~~~~~~-----~~KPVVa~kaGrsa~~~~~~~~~sHtGAlag~~~~ta~~~~aa~r~aGvi--~v~~~~el 793 (829)
T 3pff_A 724 ---EYKICRGIKEGR-----LTKPIVCWCIGTCATMFSSEVQFGHAGACANQASETAVAKNQALKEAGVF--VPRSFDEL 793 (829)
T ss_dssp ---HHHHHHHHHTTS-----CCSCEEEEEECSSTTC---------------CGGGSHHHHHHHHHHTTCB--CCSSGGGH
T ss_pred ---HHHHHHHHHhcc-----CCCCEEEEEecCcCcccccccccccccccccCCcccHHHHHHHHHHcCCe--EcCCHHHH
Confidence 122223333212 3799999888877652 11 1346778889973 33333466
Q ss_pred HHHHHHHHHH
Q 026236 227 TGICKQAIDC 236 (241)
Q Consensus 227 ~eav~~av~~ 236 (241)
-++++++++.
T Consensus 794 ~~~~~~~~~~ 803 (829)
T 3pff_A 794 GEIIQSVYED 803 (829)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666553
No 16
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=87.40 E-value=1.4 Score=41.30 Aligned_cols=93 Identities=5% Similarity=0.030 Sum_probs=65.1
Q ss_pred ccEEEEecCchhHHHHHHHHHhhccCCCCcceeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEeccccccccHHH
Q 026236 88 GRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVAT 167 (241)
Q Consensus 88 G~Ig~mvnGaGlaMatmD~i~~~~~gg~pANFlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~n~T~~d~ 167 (241)
|+||++.--++++...+|.+... |--...|.=+|+.+. -.+...++.+.+| |+++++.+++-.+| +
T Consensus 150 G~v~~vsqSG~~~~~~~~~~~~~--g~G~s~~vs~G~~~~-~~~~d~l~~~~~D--~~t~~I~l~~E~i~------~--- 215 (457)
T 2csu_A 150 GNVAFISQSGALGAGIVYKTIKE--DIGFSKFISVGNMAD-VDFAELMEYLADT--EEDKAIALYIEGVR------N--- 215 (457)
T ss_dssp CSEEEEESCHHHHHHHHHHHHHT--TCEESEEEECTTCCS-SCHHHHHHHHTTC--SSCCEEEEEESCCS------C---
T ss_pred CCEEEEeCCHHHHHHHHHHHHhc--CCCeeEEEECCCcCC-CCHHHHHHHHhcC--CCCCEEEEEEecCC------C---
Confidence 99999999999999999999999 555678999999985 5688889999898 66665332222222 1
Q ss_pred HHHHHHHHHHHhhhhhcccceeEEEEecCCChh
Q 026236 168 TFNGIIRALREKESKLKAARMHIFVRRGGPNYQ 200 (241)
Q Consensus 168 iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~ 200 (241)
.+...++.+.... ++|||+=..|....
T Consensus 216 -~~~f~~~a~~~~~-----~KPVv~~k~G~~~~ 242 (457)
T 2csu_A 216 -GKKFMEVAKRVTK-----KKPIIALKAGKSES 242 (457)
T ss_dssp -HHHHHHHHHHHHH-----HSCEEEEECC----
T ss_pred -HHHHHHHHHHhcC-----CCCEEEEEcCCCcc
Confidence 1334455555432 69999988887654
No 17
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=86.05 E-value=11 Score=30.03 Aligned_cols=112 Identities=18% Similarity=0.134 Sum_probs=71.7
Q ss_pred chhHHHHHHHHHhhccCCCCcceeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEeccccccccHHHHHHHHHHHH
Q 026236 97 GGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRAL 176 (241)
Q Consensus 97 aGlaMatmD~i~~~~~gg~pANFlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~n~T~~d~iA~GIv~A~ 176 (241)
-|+-|+. .++..+ |- .-.++|...+.+.+.++++-- +++. +. +..-. |.....+.-+++++
T Consensus 33 iG~~~va-~~l~~~--G~---eVi~lG~~~p~e~lv~aa~~~------~~di--V~--lS~~~---~~~~~~~~~~i~~L 93 (161)
T 2yxb_A 33 RGAKVVA-RALRDA--GF---EVVYTGLRQTPEQVAMAAVQE------DVDV--IG--VSILN---GAHLHLMKRLMAKL 93 (161)
T ss_dssp HHHHHHH-HHHHHT--TC---EEECCCSBCCHHHHHHHHHHT------TCSE--EE--EEESS---SCHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHC--CC---EEEECCCCCCHHHHHHHHHhc------CCCE--EE--EEeec---hhhHHHHHHHHHHH
Confidence 3555544 456666 43 345678888989887766532 3443 23 23322 45666788899999
Q ss_pred HHhhhhhcccceeEEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHhh
Q 026236 177 REKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 238 (241)
Q Consensus 177 ~~~~~~~~~~~vPiVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~~~~ 238 (241)
++.+. .++||+| .|.-..+- .+.+++.|.. .+|.+.++.++++..+.++.+
T Consensus 94 ~~~g~----~~i~v~v--GG~~~~~~----~~~l~~~G~d-~v~~~~~~~~~~~~~~~~~~~ 144 (161)
T 2yxb_A 94 RELGA----DDIPVVL--GGTIPIPD----LEPLRSLGIR-EIFLPGTSLGEIIEKVRKLAE 144 (161)
T ss_dssp HHTTC----TTSCEEE--EECCCHHH----HHHHHHTTCC-EEECTTCCHHHHHHHHHHHHH
T ss_pred HhcCC----CCCEEEE--eCCCchhc----HHHHHHCCCc-EEECCCCCHHHHHHHHHHHHH
Confidence 88652 2578776 57665554 3446778987 345666788899988887754
No 18
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=83.05 E-value=21 Score=30.44 Aligned_cols=120 Identities=9% Similarity=0.046 Sum_probs=73.0
Q ss_pred CccEEEEecCchhHH------HHHHHHHhhccCCCCcceeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEecccc
Q 026236 87 KGRIWTMVAGGGASV------IYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIA 160 (241)
Q Consensus 87 dG~Ig~mvnGaGlaM------atmD~i~~~~~gg~pANFlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~ 160 (241)
..+|+++..-.+... .+.+.+..+ |-++-.-+-+-|..+.+.-+++++-+++. +++..+||
T Consensus 181 ~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~--g~~~~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~~ai~-------- 247 (338)
T 3dbi_A 181 HQEIAFLTGSMDSPTSIERLAGYKDALAQH--GIALNEKLIANGKWTPASGAEGVEMLLER---GAKFSALV-------- 247 (338)
T ss_dssp CCSEEEECCCTTCHHHHHHHHHHHHHHHHT--TCCCCGGGEECCCSSHHHHHHHHHHHHHT---TCCCSEEE--------
T ss_pred CCEEEEEeCCCCCccHHHHHHHHHHHHHHC--CCCCCcceEEeCCCCHHHHHHHHHHHHcC---CCCCeEEE--------
Confidence 468999865433322 356888888 54443333345667888888888888863 23333333
Q ss_pred ccccHHHHHHHHHHHHHHhhhhhccccee---EEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHh
Q 026236 161 NFTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 237 (241)
Q Consensus 161 n~T~~d~iA~GIv~A~~~~~~~~~~~~vP---iVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~~~ 237 (241)
...|.+|-|+++|+++.+. ++| -|+-..+....+- ..-++ .... .+..+..+.|++++
T Consensus 248 --~~nd~~A~g~~~al~~~G~-----~vP~di~vvg~D~~~~~~~--------~~p~l--ttv~--~~~~~~g~~a~~~l 308 (338)
T 3dbi_A 248 --ASNDDMAIGAMKALHERGV-----AVPEQVSVIGFDDIAIAPY--------TVPAL--SSVK--IPVTEMIQEIIGRL 308 (338)
T ss_dssp --ESSHHHHHHHHHHHHHTTC-----CTTTTCEEEEESCCTTGGG--------SSSCC--EEEE--CCHHHHHHHHHHHH
T ss_pred --ECChHHHHHHHHHHHHcCC-----CCCCCeEEEEECChHHHhh--------cCCcc--eEEe--cCHHHHHHHHHHHH
Confidence 2458899999999999984 556 4555554432111 11123 2222 47888888888765
Q ss_pred h
Q 026236 238 M 238 (241)
Q Consensus 238 ~ 238 (241)
.
T Consensus 309 ~ 309 (338)
T 3dbi_A 309 I 309 (338)
T ss_dssp H
T ss_pred H
Confidence 3
No 19
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=80.71 E-value=22 Score=29.21 Aligned_cols=122 Identities=8% Similarity=0.064 Sum_probs=73.2
Q ss_pred CccEEEEecCchhHH------HHHHHHHhhccCCCCcceeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEecccc
Q 026236 87 KGRIWTMVAGGGASV------IYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIA 160 (241)
Q Consensus 87 dG~Ig~mvnGaGlaM------atmD~i~~~~~gg~pANFlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~ 160 (241)
..+|+++..-.+... ...+.+..+ |-++-.-.-+.+..+.+..+++++-+++. +++..+++
T Consensus 127 ~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~ai~-------- 193 (289)
T 3g85_A 127 YKSAAAILTESLNDAMDNRNKGFIETCHKN--GIKISENHIIAAENSIHGGVDAAKKLMKL---KNTPKALF-------- 193 (289)
T ss_dssp CCBCEEEECCCSSHHHHHHHHHHHHHHHHT--TCBCCGGGEEECCSSHHHHHHHHHHHTTS---SSCCSEEE--------
T ss_pred CCEEEEEeCCcccccHHHHHHHHHHHHHHc--CCCCChhheeccCCCHHHHHHHHHHHHcC---CCCCcEEE--------
Confidence 368888865443321 345778777 44433222234667788888888888774 23333333
Q ss_pred ccccHHHHHHHHHHHHHHhhhhhccccee---EEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHh
Q 026236 161 NFTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 237 (241)
Q Consensus 161 n~T~~d~iA~GIv~A~~~~~~~~~~~~vP---iVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~~~ 237 (241)
...|.+|.|+++|+++.+. ++| -|+-...++...+ +-..-++.... .+..+..+.|++++
T Consensus 194 --~~~d~~a~g~~~al~~~g~-----~vP~di~vig~d~~~~~~~--------~~~~p~lttv~--~~~~~~g~~a~~~l 256 (289)
T 3g85_A 194 --CNSDSIALGVISVLNKRQI-----SIPDDIEIVAIGMNDREYT--------EFSTPPVTIVD--IPIEEMAGTCISLV 256 (289)
T ss_dssp --ESSHHHHHHHHHHHHHTTC-----CTTTTCEEEEEECSCHHHH--------HSSSSCCEEEE--CCHHHHHHHHHHHH
T ss_pred --EcCCHHHHHHHHHHHHcCC-----CCCCceEEEEeCCCCcchh--------hccCCCCeEEc--CCHHHHHHHHHHHH
Confidence 2468899999999999884 555 4555554454443 11221223222 58888888888765
Q ss_pred h
Q 026236 238 M 238 (241)
Q Consensus 238 ~ 238 (241)
-
T Consensus 257 ~ 257 (289)
T 3g85_A 257 E 257 (289)
T ss_dssp H
T ss_pred H
Confidence 4
No 20
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=77.34 E-value=28 Score=28.77 Aligned_cols=120 Identities=7% Similarity=0.060 Sum_probs=73.3
Q ss_pred CccEEEEecCchhH------HHHHHHHHhhccCCCCcceeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEecccc
Q 026236 87 KGRIWTMVAGGGAS------VIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIA 160 (241)
Q Consensus 87 dG~Ig~mvnGaGla------MatmD~i~~~~~gg~pANFlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~ 160 (241)
..+|+++..-.+.. -...+.+..+ |-.+-...-+.+..+.+..+++++-+++. +++..+|+
T Consensus 127 ~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~ai~-------- 193 (288)
T 3gv0_A 127 RKRIAVIVPPSRFSFHDHARKGFNRGIRDF--GLTEFPIDAVTIETPLEKIRDFGQRLMQS---SDRPDGIV-------- 193 (288)
T ss_dssp CCEEEEECCCTTSHHHHHHHHHHHHHHHHT--TCEECCCCSCCTTSCHHHHHHHHHHHTTS---SSCCSEEE--------
T ss_pred CCeEEEEcCCcccchHHHHHHHHHHHHHHc--CCCcchhheeccccchHHHHHHHHHHHhC---CCCCcEEE--------
Confidence 36899886544432 2345778777 44433333345667888888888888774 23333333
Q ss_pred ccccHHHHHHHHHHHHHHhhhhhccccee---EEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHh
Q 026236 161 NFTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 237 (241)
Q Consensus 161 n~T~~d~iA~GIv~A~~~~~~~~~~~~vP---iVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~~~ 237 (241)
...|.+|.|+++|+++.+. ++| -|+-..+... + +. ..-++ ..+. .+..+..+.|++++
T Consensus 194 --~~~d~~A~g~~~al~~~g~-----~vP~di~vig~d~~~~--~-----~~-~~p~l--ttv~--~~~~~~g~~a~~~l 254 (288)
T 3gv0_A 194 --SISGSSTIALVAGFEAAGV-----KIGEDVDIVSKQSAEF--L-----NW-IKPQI--HTVN--EDIKLAGRELAKAL 254 (288)
T ss_dssp --ESCHHHHHHHHHHHHTTTC-----CTTTSCEEEEEESSTT--H-----HH-HCTTS--EEEE--CCHHHHHHHHHHHH
T ss_pred --EcCcHHHHHHHHHHHHcCC-----CCCCceEEEEecChHH--H-----hc-cCCCc--eEEe--cCHHHHHHHHHHHH
Confidence 2458899999999999884 555 4555665542 2 11 11233 2222 47888888888875
Q ss_pred h
Q 026236 238 M 238 (241)
Q Consensus 238 ~ 238 (241)
.
T Consensus 255 ~ 255 (288)
T 3gv0_A 255 L 255 (288)
T ss_dssp H
T ss_pred H
Confidence 4
No 21
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=75.15 E-value=35 Score=28.38 Aligned_cols=119 Identities=15% Similarity=0.051 Sum_probs=69.2
Q ss_pred CccEEEEecCchhHH------HHHHHHHhhccCCCCcceeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEecccc
Q 026236 87 KGRIWTMVAGGGASV------IYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIA 160 (241)
Q Consensus 87 dG~Ig~mvnGaGlaM------atmD~i~~~~~gg~pANFlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~ 160 (241)
..+|+++..-.+... .+.+.+..+ |-++..-+-+-+..+.+.-+++++-+++. .+.+. +||
T Consensus 126 ~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~--ai~-------- 192 (294)
T 3qk7_A 126 HQRIAFVSTDARISYVDQRLQGYVQTMSEA--GLMPLAGYLQKADPTRPGGYLAASRLLAL-EVPPT--AII-------- 192 (294)
T ss_dssp CCCEEEEEESSCCHHHHHHHHHHHHHHHTT--TCCCCTTCEEEECSSHHHHHHHHHHHHHS-SSCCS--EEE--------
T ss_pred CceEEEEeCCcccchHHHHHHHHHHHHHHC--CCCCChhHeecCCCCHHHHHHHHHHHHcC-CCCCc--EEE--------
Confidence 468998865544322 345778777 44432212233456778888888877764 13333 333
Q ss_pred ccccHHHHHHHHHHHHHHhhhhhccccee---EEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCH-HHHHHHHHHH
Q 026236 161 NFTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATM-TGICKQAIDC 236 (241)
Q Consensus 161 n~T~~d~iA~GIv~A~~~~~~~~~~~~vP---iVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m-~eav~~av~~ 236 (241)
...|.+|.|+++|+++.+. ++| -|+-..+... + + +..-++ .... .+. .+..+.|+++
T Consensus 193 --~~nd~~A~g~~~al~~~G~-----~vP~di~vig~D~~~~--~-----~-~~~p~l--ttv~--~~~~~~~g~~av~~ 253 (294)
T 3qk7_A 193 --TDCNMLGDGVASALDKAGL-----LGGEGISLIAYDGLPD--D-----S-LLDIAV--TPIV--QNTRTSVGKQIASM 253 (294)
T ss_dssp --ESSHHHHHHHHHHHHHTTC-----SSTTSCEEEEETCSCT--T-----C-SCCSCC--EEEE--CCCHHHHHHHHHHH
T ss_pred --ECCHHHHHHHHHHHHHcCC-----CCCCceEEEeecCccH--H-----h-hcCCCc--eeEe--cCcHHHHHHHHHHH
Confidence 2468899999999999884 666 4665655543 2 0 011123 2221 467 6777777765
Q ss_pred h
Q 026236 237 I 237 (241)
Q Consensus 237 ~ 237 (241)
+
T Consensus 254 L 254 (294)
T 3qk7_A 254 I 254 (294)
T ss_dssp H
T ss_pred H
Confidence 4
No 22
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=75.10 E-value=33 Score=28.04 Aligned_cols=119 Identities=15% Similarity=0.114 Sum_probs=73.0
Q ss_pred CccEEEEecCchh----HHHHHHHHHhhccCCCCcceeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEecccccc
Q 026236 87 KGRIWTMVAGGGA----SVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANF 162 (241)
Q Consensus 87 dG~Ig~mvnGaGl----aMatmD~i~~~~~gg~pANFlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~n~ 162 (241)
..+|+++..-.+. .-...+.+..+ |-.+-... +-+..+.+..+++++-+++. +++..+++
T Consensus 118 ~~~i~~i~~~~~~~~~R~~gf~~~l~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~l~~---~~~~~ai~---------- 181 (280)
T 3gyb_A 118 HTHIAHLRVGSGAGLRRFESFEATMRAH--GLEPLSND-YLGPAVEHAGYTETLALLKE---HPEVTAIF---------- 181 (280)
T ss_dssp CCSEEEECCSSHHHHHHHHHHHHHHHHT--TCCCEECC-CCSCCCHHHHHHHHHHHHHH---CTTCCEEE----------
T ss_pred CCeEEEEeCCCchHHHHHHHHHHHHHHc--CcCCCccc-ccCCCCHHHHHHHHHHHHhC---CCCCCEEE----------
Confidence 4789988665543 12345778887 55544333 66777888888888888774 23333333
Q ss_pred ccHHHHHHHHHHHHHHhhhhhccccee---EEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHhh
Q 026236 163 TDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 238 (241)
Q Consensus 163 T~~d~iA~GIv~A~~~~~~~~~~~~vP---iVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~~~~ 238 (241)
...|.+|.|+++|+++.+. ++| .|+-..++. .+ +.+ .-++... ..+..+..+.|++++.
T Consensus 182 ~~~d~~a~g~~~al~~~g~-----~vP~di~vvg~d~~~--~~-----~~~-~p~lttv----~~~~~~~g~~av~~l~ 243 (280)
T 3gyb_A 182 SSNDITAIGALGAARELGL-----RVPEDLSIIGYDNTP--LA-----QTR-LINLTTI----DDNSIGVGYNAALLLL 243 (280)
T ss_dssp ESSHHHHHHHHHHHHHHTC-----CTTTTCEEEEESCCH--HH-----HST-TTCCCEE----ECCHHHHHHHHHHHHH
T ss_pred ECChHHHHHHHHHHHHcCC-----CCCCeeEEEEECCch--Hh-----hcc-CCCceEE----ecCHHHHHHHHHHHHH
Confidence 2457899999999999984 555 455555433 22 211 2234322 1478888888877654
No 23
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=73.67 E-value=39 Score=28.23 Aligned_cols=120 Identities=9% Similarity=-0.021 Sum_probs=71.5
Q ss_pred CccEEEEecCchhH------HHHHHHHHhhccCCCCcceeccCCCCCHHHHHHHHHHH-----hhcccCCCCcceEEEEE
Q 026236 87 KGRIWTMVAGGGAS------VIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVV-----IDCATADPDGRKRALLI 155 (241)
Q Consensus 87 dG~Ig~mvnGaGla------MatmD~i~~~~~gg~pANFlD~GG~a~~~~v~~a~~ii-----l~~~~~~~~~~~i~inI 155 (241)
..+|+++..-.+.. -...+.+..+ |-++-.-+-.-+..+.+.-+++++-+ ++. +++..+||
T Consensus 131 ~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~--g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~---~~~~~ai~--- 202 (303)
T 3kke_A 131 HSRIAFISGTAIHDTAQRRKEGYLETLASA--GLRSEAAWVVDAGWEADAGSAALNTLYRGANLGK---PDGPTAVV--- 202 (303)
T ss_dssp CCSEEEEESCSSCHHHHHHHHHHHHHHHHT--TCCCCGGGEEECCSSHHHHHHHHHHHHHHHCTTS---TTSCSEEE---
T ss_pred CCeEEEEeCCCcCccHHHHHHHHHHHHHHc--CCCCCcceEEecCCChHHHHHHHHHhcchhhhcC---CCCCcEEE---
Confidence 46899886544422 1345788888 54543222234566788888888877 763 23333333
Q ss_pred eccccccccHHHHHHHHHHHHHHhhhhhccccee---EEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHH
Q 026236 156 GGGIANFTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQ 232 (241)
Q Consensus 156 ~GGI~n~T~~d~iA~GIv~A~~~~~~~~~~~~vP---iVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~ 232 (241)
.-.|.+|.|+++|+++.+. ++| -|+-..+. ..+ . -..-++.... .+..+..+.
T Consensus 203 -------~~nd~~A~g~~~al~~~G~-----~vP~di~vig~D~~--~~~----~----~~~p~lttv~--~~~~~~g~~ 258 (303)
T 3kke_A 203 -------VASVNAAVGALSTALRLGL-----RVPEDLSIVGINTT--WVS----D----TVYPALTTVR--LPLQRLGEV 258 (303)
T ss_dssp -------ESSHHHHHHHHHHHHHTTC-----CTTTTCEEEEESCC--HHH----H----HSSSCCEEEE--CCHHHHHHH
T ss_pred -------ECCHHHHHHHHHHHHHcCC-----CCCCceEEEEEcCh--hHh----h----cCCCCeeEEe--cCHHHHHHH
Confidence 2458899999999999884 566 34545443 222 1 1222223222 478888888
Q ss_pred HHHHhh
Q 026236 233 AIDCIM 238 (241)
Q Consensus 233 av~~~~ 238 (241)
|++++-
T Consensus 259 av~~L~ 264 (303)
T 3kke_A 259 AADVLM 264 (303)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887653
No 24
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=73.24 E-value=37 Score=27.83 Aligned_cols=120 Identities=13% Similarity=-0.007 Sum_probs=71.1
Q ss_pred CccEEEEecCchhHH------HHHHHHHhhccCCCCcceeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEecccc
Q 026236 87 KGRIWTMVAGGGASV------IYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIA 160 (241)
Q Consensus 87 dG~Ig~mvnGaGlaM------atmD~i~~~~~gg~pANFlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~ 160 (241)
..+|+++..-.+... ...+.+..+ |-..-.-.-+-+..+.+..+++++-+++. +++..+++
T Consensus 131 ~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~ai~-------- 197 (292)
T 3k4h_A 131 HKQIAFIGGGSDLLVTRDRLAGMSDALKLA--DIVLPKEYILHFDFSRESGQQAVEELMGL---QQPPTAIM-------- 197 (292)
T ss_dssp CCCEEEEESCTTBHHHHHHHHHHHHHHHHT--TCCCCGGGEEECCSSHHHHHHHHHHHHTS---SSCCSEEE--------
T ss_pred CceEEEEeCcccchhHHHHHHHHHHHHHHc--CCCCChheEEecCCCHHHHHHHHHHHHcC---CCCCcEEE--------
Confidence 468998875544432 345788887 44432212223566788888888888764 23333333
Q ss_pred ccccHHHHHHHHHHHHHHhhhhhccccee---EEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHh
Q 026236 161 NFTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 237 (241)
Q Consensus 161 n~T~~d~iA~GIv~A~~~~~~~~~~~~vP---iVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~~~ 237 (241)
...|.+|.|+++|+++.+. ++| .|+-..++. .+ . ...-++..+. .+..+..+.|++++
T Consensus 198 --~~~d~~a~g~~~al~~~g~-----~vP~di~vig~d~~~--~~----~----~~~p~lttv~--~~~~~~g~~av~~l 258 (292)
T 3k4h_A 198 --ATDDLIGLGVLSALSKKGF-----VVPKDVSIVSFNNAL--LS----E----IASPPLSTVD--VNIYQLGYEAAKAL 258 (292)
T ss_dssp --ESSHHHHHHHHHHHHHTTC-----CTTTTCEEEEESCCH--HH----H----HSSSCCEEEE--CCHHHHHHHHHHHH
T ss_pred --EcChHHHHHHHHHHHHhCC-----CCCCeEEEEEecCcc--hh----h----ccCCCceEEe--cCHHHHHHHHHHHH
Confidence 2458899999999999884 555 355454432 22 1 1222223222 47888888888765
Q ss_pred h
Q 026236 238 M 238 (241)
Q Consensus 238 ~ 238 (241)
.
T Consensus 259 ~ 259 (292)
T 3k4h_A 259 V 259 (292)
T ss_dssp H
T ss_pred H
Confidence 4
No 25
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=72.55 E-value=37 Score=27.54 Aligned_cols=120 Identities=8% Similarity=0.005 Sum_probs=69.1
Q ss_pred CccEEEEecCchhHH------HHHHHHHhhccCCCCcceeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEecccc
Q 026236 87 KGRIWTMVAGGGASV------IYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIA 160 (241)
Q Consensus 87 dG~Ig~mvnGaGlaM------atmD~i~~~~~gg~pANFlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~ 160 (241)
..+|+++..-.+... ...+.+..+ |-++-...-+-+..+.+..+++++-+++. .+++. +++
T Consensus 120 ~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~--ai~-------- 186 (275)
T 3d8u_A 120 FKNVGFIGARGNHSTLQRQLHGWQSAMIEN--YLTPDHFLTTHEAPSSQLGAEGLAKLLLR-DSSLN--ALV-------- 186 (275)
T ss_dssp CCCEEEEECSCSSHHHHHHHHHHHHHHHHT--TCCCCCEEECSSCCCHHHHHHHHHHHHTT-CTTCC--EEE--------
T ss_pred CCeEEEEcCCCCCchHHHHHHHHHHHHHHc--CCCCCccEEEeCCCChhHHHHHHHHHHhC-CCCCC--EEE--------
Confidence 468998865433322 345788887 54433222223556778888887777763 12333 333
Q ss_pred ccccHHHHHHHHHHHHHHhhhhhccccee---EEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHh
Q 026236 161 NFTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 237 (241)
Q Consensus 161 n~T~~d~iA~GIv~A~~~~~~~~~~~~vP---iVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~~~ 237 (241)
...|.+|.|+++|+++.+. ++| .|+-..++. .+ +.+. -.+ .... .+..+..+.|++++
T Consensus 187 --~~~d~~a~g~~~al~~~g~-----~vP~di~vvg~d~~~--~~-----~~~~-p~l--ttv~--~~~~~~g~~a~~~l 247 (275)
T 3d8u_A 187 --CSHEEIAIGALFECHRRVL-----KVPTDIAIICLEGSS--MG-----EHAY-PSL--TSAE--FDYERMGTKAAEKL 247 (275)
T ss_dssp --ESSHHHHHHHHHHHHHTTC-----CTTTTCEEEESSCCH--HH-----HTSS-SCC--EEEE--CCHHHHHHHHHHHH
T ss_pred --EcCcHHHHHHHHHHHHcCC-----CCCCceEEEecCCch--Hh-----hhcC-CCc--ceec--CCHHHHHHHHHHHH
Confidence 2457899999999999874 555 345444432 22 1111 123 3222 47888888887765
Q ss_pred h
Q 026236 238 M 238 (241)
Q Consensus 238 ~ 238 (241)
.
T Consensus 248 ~ 248 (275)
T 3d8u_A 248 L 248 (275)
T ss_dssp H
T ss_pred H
Confidence 3
No 26
>2nwr_A 2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KDO8P, KDO8PS, PEP, A5P, transferase; HET: PEP; 1.50A {Aquifex aeolicus} PDB: 2nws_A* 2nx1_A* 3e0i_A* 1fwn_A* 1fwt_A* 1fws_A* 1fx6_A 1fww_A 1fxq_A* 1fy6_A* 1jcx_A* 1jcy_A* 1pck_A* 1pcw_A* 1fxp_A* 2a21_A* 2a2i_A* 1pe1_A* 3e12_A* 2nx3_A* ...
Probab=71.78 E-value=10 Score=33.21 Aligned_cols=50 Identities=16% Similarity=0.348 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHhhhhhcccceeEEEE-------------ecCCChhHHHHHHHHHHHHhCCCeE
Q 026236 167 TTFNGIIRALREKESKLKAARMHIFVR-------------RGGPNYQTGLAKMRALGEELGIPLE 218 (241)
Q Consensus 167 ~iA~GIv~A~~~~~~~~~~~~vPiVvR-------------l~Gtn~~~g~~~l~~~l~~~gi~i~ 218 (241)
+.+.-+.+.+++...+.. .+++|.| -+|...++|++.|+++.++.|+|+.
T Consensus 17 ~~~~~~A~~l~~~~~~~~--~~~~v~k~~f~KapRTs~~sf~G~g~~~GL~~l~~~~~e~Glp~~ 79 (267)
T 2nwr_A 17 ELLLKVGEEIKRLSEKFK--EVEFVFKSSFDKANRSSIHSFRGHGLEYGVKALRKVKEEFGLKIT 79 (267)
T ss_dssp HHHHHHHHHHHHHHHHCT--TEEEEEECBSCCTTCSSTTSCCCSCHHHHHHHHHHHHHHHCCEEE
T ss_pred HHHHHHHHHHHHHHHhhc--CccEEEeeccccCCCCCCCCCcCccHHHHHHHHHHHHHhcCCeEE
Confidence 344455555555543221 5899998 5666689999999999999999975
No 27
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=70.48 E-value=46 Score=28.35 Aligned_cols=120 Identities=16% Similarity=0.067 Sum_probs=70.8
Q ss_pred CccEEEEecCc--hhH-----HHHHHHHHhhccCCCCcceeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEeccc
Q 026236 87 KGRIWTMVAGG--GAS-----VIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGI 159 (241)
Q Consensus 87 dG~Ig~mvnGa--Gla-----MatmD~i~~~~~gg~pANFlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI 159 (241)
..+|+++..-. ... -.+.+.+..+ |-.+-...-+.|..+.+.-+++++-+++. .+++.+ ||
T Consensus 185 ~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~--g~~~~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~a--i~------- 252 (344)
T 3kjx_A 185 YRRIGFMGTKMPLDYRARKRFEGFTEVLGKN--GVEIEDREFYSGGSALAKGREMTQAMLER-SPDLDF--LY------- 252 (344)
T ss_dssp CCSCCEEESSTTTCHHHHHHHHHHHHHHHHT--TCCCSCEEECSSCCCHHHHHHHHHHHHHH-STTCCE--EE-------
T ss_pred CCeEEEEecCcccCccHHHHHHHHHHHHHHc--CCCCChheEEeCCCCHHHHHHHHHHHHhc-CCCCCE--EE-------
Confidence 36788885432 111 2356888888 54544444445777888888888777764 133433 33
Q ss_pred cccccHHHHHHHHHHHHHHhhhhhccccee---EEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHH
Q 026236 160 ANFTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDC 236 (241)
Q Consensus 160 ~n~T~~d~iA~GIv~A~~~~~~~~~~~~vP---iVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~~ 236 (241)
...|.+|-|+++|+++.+. ++| -|+-..+. +.+ +-..-++.... .+..+..+.|+++
T Consensus 253 ---~~nd~~A~g~~~al~~~g~-----~vP~disvvg~D~~--~~~--------~~~~p~lttv~--~~~~~~g~~av~~ 312 (344)
T 3kjx_A 253 ---YSNDMIAAGGLLYLLEQGI-----DIPGQIGLAGFNNV--ELL--------QGLPRKLATMD--ACRLEIGRKAAEI 312 (344)
T ss_dssp ---ESSHHHHHHHHHHHHHTTC-----CTTTTCEEECSBCC--GGG--------GGSSSCCBEEB--CCHHHHHHHHHHH
T ss_pred ---ECCHHHHHHHHHHHHHcCC-----CCCCceEEEEECCh--HHH--------hccCCCccEEe--CCHHHHHHHHHHH
Confidence 2458899999999999884 666 34433332 222 11111222222 4788888888876
Q ss_pred hh
Q 026236 237 IM 238 (241)
Q Consensus 237 ~~ 238 (241)
.-
T Consensus 313 l~ 314 (344)
T 3kjx_A 313 IA 314 (344)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 28
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=69.88 E-value=46 Score=27.56 Aligned_cols=123 Identities=8% Similarity=-0.026 Sum_probs=69.7
Q ss_pred CccEEEEecCchhHH------HHHHHHHhhccCCCCcceeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEecccc
Q 026236 87 KGRIWTMVAGGGASV------IYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIA 160 (241)
Q Consensus 87 dG~Ig~mvnGaGlaM------atmD~i~~~~~gg~pANFlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~ 160 (241)
.++|+++....+... ...+.+..+ |-++. ++-+..+.+..+++++-+++. +++..+|+
T Consensus 130 ~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~--g~~~~---~~~~~~~~~~~~~~~~~~l~~---~~~~~ai~-------- 193 (297)
T 3rot_A 130 AKRALVLNPQPGHIGLEKRAYGIKTILQDK--GIFFE---ELDVGTDPNQVQSRVKSYFKI---HPETNIIF-------- 193 (297)
T ss_dssp CCEEEEEESCTTCHHHHHHHHHHHHHHHHT--TCEEE---EEECCSCHHHHHHHHHHHHHH---CTTCCEEE--------
T ss_pred CceEEEEeCCCCcHHHHHHHHHHHHHHHhc--CCeEE---EeecCCChHHHHHHHHHHHHh---CCCCCEEE--------
Confidence 468999865544332 345888887 54543 223455678888888776664 23333333
Q ss_pred ccccHHHHHHHHHHHHHHhhhhhccc-ceeEEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHhh
Q 026236 161 NFTDVATTFNGIIRALREKESKLKAA-RMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 238 (241)
Q Consensus 161 n~T~~d~iA~GIv~A~~~~~~~~~~~-~vPiVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~~~~ 238 (241)
+-.|.+|.|+++|+++.+.. .+. ++. |+-..++ ..+ ...+.+ |.++.... .+..+..+.|++++.
T Consensus 194 --~~~d~~A~g~~~al~~~g~~-vP~~dv~-vig~D~~--~~~----~~~i~~-~~~lttv~--~~~~~~g~~av~~l~ 259 (297)
T 3rot_A 194 --CLTSQALDPLGQMLLHPDRY-DFNYQPQ-VYSFDKT--PNT----VSLIHK-KLVNYVMD--QQPFLMGYLSITQLV 259 (297)
T ss_dssp --ESSHHHHHHHHHHHHSHHHH-TCCCCCE-EEEECCC--HHH----HHHHHT-TSCCEEEC--CCHHHHHHHHHHHHH
T ss_pred --EcCCcchHHHHHHHHhcCCc-cCCCceE-EEEeCCC--HHH----HHHHHc-CCceEEEe--cChHHHHHHHHHHHH
Confidence 24588999999999998851 111 333 4444443 233 222232 43333222 477777777776643
No 29
>1n8f_A DAHP synthetase; (beta/alpha)8 barrel, metal binding protein; HET: PEP; 1.75A {Escherichia coli} SCOP: c.1.10.4 PDB: 1gg1_A 1kfl_A* 1qr7_A*
Probab=69.62 E-value=14 Score=33.97 Aligned_cols=48 Identities=21% Similarity=0.284 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHhhhhhcccceeEEEEe-----------cCCC----------hhHHHHHHHHH---HHHhCCCeE
Q 026236 166 ATTFNGIIRALREKESKLKAARMHIFVRR-----------GGPN----------YQTGLAKMRAL---GEELGIPLE 218 (241)
Q Consensus 166 d~iA~GIv~A~~~~~~~~~~~~vPiVvRl-----------~Gtn----------~~~g~~~l~~~---l~~~gi~i~ 218 (241)
-++|+.+.+.-.+++. ++++|.|. +|.- .++|++++|++ .++.|+|+-
T Consensus 70 leyA~~L~~~~~~l~d-----~l~ivmR~yfeKPRTs~g~kGl~~dP~ld~s~~i~~GL~ilr~ll~~~~e~GlPv~ 141 (350)
T 1n8f_A 70 KEYATRLLALREELKD-----ELEIVMRVYFEKPRTTVGWKGLINDPHMDNSFQINDGLRIARKLLLDINDSGLPAA 141 (350)
T ss_dssp HHHHHHHHHHHHHTTT-----TEEEEEECCCCCCCSSSSCCCTTTCTTSSSCCCHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHhhcc-----CeEEEEEeccccCcCCcCcCCCCCCCCccccccHHHHHHHHHHHHHHHHHhCCceE
Confidence 3445555555555442 79999994 5655 69999999999 899999975
No 30
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=68.74 E-value=37 Score=26.05 Aligned_cols=115 Identities=12% Similarity=0.134 Sum_probs=70.7
Q ss_pred chhHHHHHHHHHhhccCCCCcceeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEeccccccccHHHHHHHHHHHH
Q 026236 97 GGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRAL 176 (241)
Q Consensus 97 aGlaMatmD~i~~~~~gg~pANFlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~n~T~~d~iA~GIv~A~ 176 (241)
.|+-|+. .++..+ |-+ -.|+|...+.+.+.++.+-- +++. |-+..-. |.....++.+++++
T Consensus 18 iG~~~v~-~~l~~~--G~~---Vi~lG~~~p~e~~v~~a~~~------~~d~----v~lS~~~---~~~~~~~~~~i~~l 78 (137)
T 1ccw_A 18 VGNKILD-HAFTNA--GFN---VVNIGVLSPQELFIKAAIET------KADA----ILVSSLY---GQGEIDCKGLRQKC 78 (137)
T ss_dssp HHHHHHH-HHHHHT--TCE---EEEEEEEECHHHHHHHHHHH------TCSE----EEEEECS---STHHHHHTTHHHHH
T ss_pred HHHHHHH-HHHHHC--CCE---EEECCCCCCHHHHHHHHHhc------CCCE----EEEEecC---cCcHHHHHHHHHHH
Confidence 4555544 466666 433 46788889999988877644 3443 2233323 45556677888889
Q ss_pred HHhhhhhcccceeEEEEecCCC--hhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHh
Q 026236 177 REKESKLKAARMHIFVRRGGPN--YQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 237 (241)
Q Consensus 177 ~~~~~~~~~~~vPiVvRl~Gtn--~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~~~ 237 (241)
++.+. .++||+| .|.- ..+-..-..+.+++.|+. .+|.+.++..++++..++..
T Consensus 79 ~~~g~----~~i~v~v--GG~~~~~~~~~~~~~~~~~~~G~d-~~~~~g~~~~~~~~~l~~~~ 134 (137)
T 1ccw_A 79 DEAGL----EGILLYV--GGNIVVGKQHWPDVEKRFKDMGYD-RVYAPGTPPEVGIADLKKDL 134 (137)
T ss_dssp HHTTC----TTCEEEE--EESCSSSSCCHHHHHHHHHHTTCS-EECCTTCCHHHHHHHHHHHH
T ss_pred HhcCC----CCCEEEE--ECCCcCchHhhhhhHHHHHHCCCC-EEECCCCCHHHHHHHHHHHh
Confidence 88753 2577765 4532 111111114557788987 45677889999998887654
No 31
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=64.11 E-value=36 Score=28.18 Aligned_cols=119 Identities=9% Similarity=0.005 Sum_probs=67.8
Q ss_pred CccEEEEecCc-hhHH------HHHHHHHhhccCCCCcceeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEeccc
Q 026236 87 KGRIWTMVAGG-GASV------IYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGI 159 (241)
Q Consensus 87 dG~Ig~mvnGa-GlaM------atmD~i~~~~~gg~pANFlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI 159 (241)
.++|+++..-. +... ...+.+..+ |-++..-.-+-+..+.+.-+++++-+++. +++..+||
T Consensus 133 ~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~ai~------- 200 (289)
T 2fep_A 133 HTDIAFVSGPMAEPINRSKKLQGYKRALEEA--NLPFNEQFVAEGDYTYDSGLEALQHLMSL---DKKPTAIL------- 200 (289)
T ss_dssp CSSEEEEESCTTSHHHHTTHHHHHHHHHHHT--TCCCCGGGEEECCSCHHHHHHHHHHHTTS---SSCCSEEE-------
T ss_pred CCeEEEEeCCccccccHHHHHHHHHHHHHHc--CCCCChheEeeCCCCHHHHHHHHHHHHcC---CCCCCEEE-------
Confidence 47899986543 3322 356788887 54433211123455777788888777763 23333333
Q ss_pred cccccHHHHHHHHHHHHHHhhhhhccccee---EEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHH
Q 026236 160 ANFTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDC 236 (241)
Q Consensus 160 ~n~T~~d~iA~GIv~A~~~~~~~~~~~~vP---iVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~~ 236 (241)
...|.+|.|+++|+++.+. ++| -|+-..+... + . .+ .-.+ .... .+..+..+.|+++
T Consensus 201 ---~~~d~~A~g~~~al~~~G~-----~vP~di~vvg~D~~~~--~----~-~~-~p~l--ttv~--~~~~~~g~~a~~~ 260 (289)
T 2fep_A 201 ---SATDEMALGIIHAAQDQGL-----SIPEDLDIIGFDNTRL--S----L-MV-RPQL--STVV--QPTYDIGAVAMRL 260 (289)
T ss_dssp ---ESSHHHHHHHHHHHHHTTC-----CTTTTCEEEEEECCGG--G----T-SS-SSCC--EEEE--CCHHHHHHHHHHH
T ss_pred ---ECCHHHHHHHHHHHHHcCC-----CCCCCeEEEEECChHH--H----h-hc-CCce--eEEe--CCHHHHHHHHHHH
Confidence 2457899999999999874 455 4554554432 2 1 11 1123 2222 4777777777775
Q ss_pred h
Q 026236 237 I 237 (241)
Q Consensus 237 ~ 237 (241)
+
T Consensus 261 l 261 (289)
T 2fep_A 261 L 261 (289)
T ss_dssp H
T ss_pred H
Confidence 4
No 32
>3tml_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.90A {Burkholderia cenocepacia} PDB: 3t4c_A
Probab=64.04 E-value=15 Score=32.71 Aligned_cols=47 Identities=15% Similarity=0.256 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHhhhhhcccceeEEEE-------------ecCCChhHHHHHHHHHHHHhCCCeE
Q 026236 165 VATTFNGIIRALREKESKLKAARMHIFVR-------------RGGPNYQTGLAKMRALGEELGIPLE 218 (241)
Q Consensus 165 ~d~iA~GIv~A~~~~~~~~~~~~vPiVvR-------------l~Gtn~~~g~~~l~~~l~~~gi~i~ 218 (241)
.-++|+.+.++-.++ .+++|.| .+|...++|+++|+++.++.|+|+.
T Consensus 33 ~~e~A~~lk~~~~~~-------~~~~v~k~~f~KapRTs~~sf~Glg~~~GL~~L~~~~~e~Glp~~ 92 (288)
T 3tml_A 33 TIDTAGRLKEICEKL-------NVPFIYKSSYDKANRSSGKSFRGLGMDEGLRILSEVKRQLGLPVL 92 (288)
T ss_dssp HHHHHHHHHHHHHHH-------TCCEEEECBC--------------CHHHHHHHHHHHHHHHCCCEE
T ss_pred HHHHHHHHHHHHHHc-------CCCEEEecccccCCCCCCCCcCCcCHHHHHHHHHHHHHhcCCeEE
Confidence 344555555554444 3787777 5677779999999999999999976
No 33
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=63.48 E-value=42 Score=27.76 Aligned_cols=124 Identities=11% Similarity=0.023 Sum_probs=69.4
Q ss_pred CCccEEEEecCchhHH------HHHHHHHhhccCCCCcceeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEeccc
Q 026236 86 PKGRIWTMVAGGGASV------IYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGI 159 (241)
Q Consensus 86 ~dG~Ig~mvnGaGlaM------atmD~i~~~~~gg~pANFlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI 159 (241)
..++|+++. |-+-.. ...+.+..+ |..+--..-.-|..+.+..+++++-+++. +++..+|+
T Consensus 126 g~~~i~~i~-~~~~~~~~~R~~gf~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~ai~------- 192 (305)
T 3g1w_A 126 GEGEVAVIT-LPNQLNHQERTTGFKETLEAE--FPAIEVIAVEDGRGDSLHSRRVAHQLLED---YPNLAGIF------- 192 (305)
T ss_dssp TCEEEEEEE-CTTCHHHHHHHHHHHHHHHHH--CTTEEEEEEEECTTCHHHHHHHHHHHHHH---CTTEEEEE-------
T ss_pred CCcEEEEEe-CCCcccHHHHHHHHHHHHHhh--CCCCEEEEEecCCCCHHHHHHHHHHHHHh---CCCceEEE-------
Confidence 357899886 444321 245777777 43332222234666788888888877764 34433223
Q ss_pred cccccHHHHHHHHHHHHHHhhhhhcccceeEEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHhh
Q 026236 160 ANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 238 (241)
Q Consensus 160 ~n~T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~~~~ 238 (241)
...|.+|.|+++|+++.+.. .++.| +-..++. +. ...+.+-.+--.+. .+..+..+.|++++-
T Consensus 193 ---~~~d~~a~g~~~al~~~g~~---~di~v-ig~d~~~--~~----~~~~~~~~l~ttv~---~~~~~~g~~av~~l~ 255 (305)
T 3g1w_A 193 ---ATEANGGVGVGDAVRLESRA---GEIQI-ISFDTDK--GT----LDLVDEGIISATLA---QGTWNMGYWSLTYLF 255 (305)
T ss_dssp ---ESSHHHHHHHHHHHHHTTCT---TTSEE-EEESCCH--HH----HHHHHTTSSCEEEE---ECHHHHHHHHHHHHH
T ss_pred ---ECCCcchhhHHHHHHhcCCC---CCeEE-EEeCCCH--HH----HHHHHcCceEEEEe---cChHHHHHHHHHHHH
Confidence 24578999999999998853 24554 4444432 23 12222222211222 377777777776543
No 34
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=63.09 E-value=57 Score=32.84 Aligned_cols=110 Identities=24% Similarity=0.256 Sum_probs=69.7
Q ss_pred chhHHHHHHHHHhhccCCCCcceeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEeccccccccHHHHHHHHHHHH
Q 026236 97 GGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRAL 176 (241)
Q Consensus 97 aGlaMatmD~i~~~~~gg~pANFlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~n~T~~d~iA~GIv~A~ 176 (241)
.|.-++. .++..+ |-+. .|.|...+++++.+++.- .++++ |.+ .+-. |........+++++
T Consensus 619 iG~~iVa-~~l~~~--GfeV---i~lG~~v~~eeiv~aA~e------~~adi--Vgl--Ssl~---~~~~~~~~~vi~~L 679 (762)
T 2xij_A 619 RGAKVIA-TGFADL--GFDV---DIGPLFQTPREVAQQAVD------ADVHA--VGV--STLA---AGHKTLVPELIKEL 679 (762)
T ss_dssp HHHHHHH-HHHHHT--TCEE---EECCTTCCHHHHHHHHHH------TTCSE--EEE--EECS---SCHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHhC--CeEE---eeCCCCCCHHHHHHHHHH------cCCCE--EEE--eeec---HHHHHHHHHHHHHH
Confidence 4544443 355555 5565 467888888988776652 23443 233 3322 45566788899999
Q ss_pred HHhhhhhcccceeEEEEecC--CChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHhh
Q 026236 177 REKESKLKAARMHIFVRRGG--PNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 238 (241)
Q Consensus 177 ~~~~~~~~~~~vPiVvRl~G--tn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~~~~ 238 (241)
++.+. .++||+| .| +..+ .+.+++.|..- +|++.++..+++..++++.+
T Consensus 680 r~~G~----~dv~Viv--GG~~P~~d------~~~l~~~GaD~-~f~pgtd~~e~~~~i~~~l~ 730 (762)
T 2xij_A 680 NSLGR----PDILVMC--GGVIPPQD------YEFLFEVGVSN-VFGPGTRIPKAAVQVLDDIE 730 (762)
T ss_dssp HHTTC----TTSEEEE--EESCCGGG------HHHHHHHTCCE-EECTTCCHHHHHHHHHHHHH
T ss_pred HhcCC----CCCEEEE--eCCCCccc------HHHHHhCCCCE-EeCCCCCHHHHHHHHHHHHH
Confidence 99874 3577776 44 3332 23356778874 45667899999999988764
No 35
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=62.35 E-value=73 Score=27.09 Aligned_cols=78 Identities=12% Similarity=0.012 Sum_probs=49.8
Q ss_pred ccEEEEecCchhHH------HHHHHHHhhccCCCCcceeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEeccccc
Q 026236 88 GRIWTMVAGGGASV------IYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIAN 161 (241)
Q Consensus 88 G~Ig~mvnGaGlaM------atmD~i~~~~~gg~pANFlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~n 161 (241)
++|+++..-.+... ...+.+..+ |. +-.-.-+-+..+.+..+++++-+++. +++..+|+
T Consensus 146 ~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~L~~---~~~~~aI~--------- 210 (350)
T 3h75_A 146 IELLAFSGLKVTPAAQLRERGLRRALAEH--PQ-VHLRQLVYGEWNRERAYRQAQQLLKR---YPKTQLVW--------- 210 (350)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHHC--TT-EEEEEEEECTTCHHHHHHHHHHHHHH---CTTEEEEE---------
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHHC--CC-eEEEEEeeCCCcHHHHHHHHHHHHHh---CCCcCEEE---------
Confidence 57898865444322 345778777 44 21112234556788888888877764 34433222
Q ss_pred cccHHHHHHHHHHHHHHhhh
Q 026236 162 FTDVATTFNGIIRALREKES 181 (241)
Q Consensus 162 ~T~~d~iA~GIv~A~~~~~~ 181 (241)
+..|.+|.|+++|+++.+.
T Consensus 211 -~~~d~~a~g~~~al~~~G~ 229 (350)
T 3h75_A 211 -SANDEMALGAMQAARELGR 229 (350)
T ss_dssp -ESSHHHHHHHHHHHHHTTC
T ss_pred -ECChHHHHHHHHHHHHcCC
Confidence 2458899999999999884
No 36
>3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis}
Probab=61.23 E-value=16 Score=32.67 Aligned_cols=47 Identities=19% Similarity=0.287 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhhhhhcccceeEEEE-------------ecCCChhHHHHHHHHHHHHhCCCeE
Q 026236 169 FNGIIRALREKESKLKAARMHIFVR-------------RGGPNYQTGLAKMRALGEELGIPLE 218 (241)
Q Consensus 169 A~GIv~A~~~~~~~~~~~~vPiVvR-------------l~Gtn~~~g~~~l~~~l~~~gi~i~ 218 (241)
+.-+.+.+++...+ ..+++|.| .+|...++|+++|+++.++.|+|+.
T Consensus 57 ~~~~A~~lk~~~~~---~~~~~v~k~~f~KapRTs~~sf~Glg~~~GL~~L~~~~~e~GLpv~ 116 (298)
T 3fs2_A 57 AFEMAGRLKEMTDK---LGIGLVYKSSFDKANRTSLKAARGIGLEKALEVFSDLKKEYGFPVL 116 (298)
T ss_dssp HHHHHHHHHHHHHH---HTCCEEEECBCCCCC---------CCHHHHHHHHHHHHHHHCCCEE
T ss_pred HHHHHHHHHHHHHH---cCCcEEEEcccccCCCCCCCCcCCcCHHHHHHHHHHHHHhcCCeEE
Confidence 33444444444321 14788887 5577789999999999999999976
No 37
>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*
Probab=61.22 E-value=17 Score=32.24 Aligned_cols=47 Identities=13% Similarity=0.215 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhhhhhcccceeEEEE-------------ecCCChhHHHHHHHHHHHHhCCCeE
Q 026236 169 FNGIIRALREKESKLKAARMHIFVR-------------RGGPNYQTGLAKMRALGEELGIPLE 218 (241)
Q Consensus 169 A~GIv~A~~~~~~~~~~~~vPiVvR-------------l~Gtn~~~g~~~l~~~l~~~gi~i~ 218 (241)
+.-+.+.+++...+ ..+++|.| .+|...++|+++|+++.++.|+|+.
T Consensus 36 ~~~~A~~lk~~~~~---~~~~~v~k~~f~KapRTs~~sf~G~g~~~GL~~L~~~~~e~Glp~~ 95 (285)
T 3sz8_A 36 TLDVCGEYVAVTRK---LGIPFVFKASFDKANRSSIHSYRGVGLDEGLKIFAEVKARFGVPVI 95 (285)
T ss_dssp HHHHHHHHHHHHHH---HTCCEEEEEESCCTTCSSTTSCCCSCHHHHHHHHHHHHHHHCCCEE
T ss_pred HHHHHHHHHHHHHh---heeeeEEEeecccCCCCCCCCcCCcCHHHHHHHHHHHHHhcCCeEE
Confidence 33444445544321 24888888 4577789999999999999999976
No 38
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=61.13 E-value=75 Score=27.18 Aligned_cols=120 Identities=10% Similarity=0.020 Sum_probs=70.8
Q ss_pred CccEEEEecCchhH-------HHHHHHHHhhccCCCCcc-eeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEecc
Q 026236 87 KGRIWTMVAGGGAS-------VIYADTVGDLGYASELGN-YAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGG 158 (241)
Q Consensus 87 dG~Ig~mvnGaGla-------MatmD~i~~~~~gg~pAN-FlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GG 158 (241)
..+|+++..-.+.. -.+.+.+..+ |-.+.. +.-..+..+.+.-+++++-+++. .+.+.+ ||
T Consensus 187 ~r~I~~i~~~~~~~~~~~~R~~Gf~~al~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~a--i~------ 255 (355)
T 3e3m_A 187 FRKIVFLGEKDDDWTRGAARRAGFKRAMREA--GLNPDQEIRLGAPPLSIEDGVAAAELILQE-YPDTDC--IF------ 255 (355)
T ss_dssp CCSEEEEEESSCTTSHHHHHHHHHHHHHHHT--TSCSCCEEEESCSSCCHHHHHHHHHHHHHH-CTTCCE--EE------
T ss_pred CCeEEEEccCcccChhHHHHHHHHHHHHHHC--CcCCCccEEEecCCCCHHHHHHHHHHHHcC-CCCCcE--EE------
Confidence 46899986543321 2456888888 545442 33334556778888888888774 133433 33
Q ss_pred ccccccHHHHHHHHHHHHHHhhhhhccccee---EEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHH
Q 026236 159 IANFTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAID 235 (241)
Q Consensus 159 I~n~T~~d~iA~GIv~A~~~~~~~~~~~~vP---iVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~ 235 (241)
...|.+|-|+++|+++.+. ++| -|+-..+. ..+ +.+ .-.+. ... .+..+..+.|++
T Consensus 256 ----~~nD~~A~g~~~al~~~G~-----~vP~disvigfD~~--~~~-----~~~-~p~lt--tv~--~~~~~~g~~A~~ 314 (355)
T 3e3m_A 256 ----CVSDMPAFGLLSRLKSIGV-----AVPEQVSVVGFGNF--EVS-----RFA-SPEIS--TVR--VDPIAIGRETGS 314 (355)
T ss_dssp ----ESSHHHHHHHHHHHHHHTC-----CTTTTCEEECSSCC--HHH-----HHS-SSCCB--EEE--CCHHHHHHHHHH
T ss_pred ----ECChHHHHHHHHHHHHcCC-----CCCCceEEEEECCh--HHH-----hcc-CCCce--EEe--cCHHHHHHHHHH
Confidence 2458899999999999884 566 23333222 222 111 11232 222 478888888887
Q ss_pred Hhh
Q 026236 236 CIM 238 (241)
Q Consensus 236 ~~~ 238 (241)
+.-
T Consensus 315 ~l~ 317 (355)
T 3e3m_A 315 LIL 317 (355)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 39
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=60.48 E-value=57 Score=26.75 Aligned_cols=120 Identities=16% Similarity=0.135 Sum_probs=63.8
Q ss_pred CccEEEEecCchhHH------HHHHHHHhhccCCCCcceeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEecccc
Q 026236 87 KGRIWTMVAGGGASV------IYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIA 160 (241)
Q Consensus 87 dG~Ig~mvnGaGlaM------atmD~i~~~~~gg~pANFlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~ 160 (241)
..+|+++..-.+... ...+.+..+ |-++-.-+-.-+..+.+..+++++-+++. .+++. +|+
T Consensus 125 ~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~--ai~-------- 191 (291)
T 3egc_A 125 HTRIGAIVGSAGLMTSRERLKGFRAAMSAA--GLPVRQEWIAAGGVRADNGRDGAIKVLTG-ADRPT--ALL-------- 191 (291)
T ss_dssp CCSEEEECSCTTSHHHHHHHHHHHHHHHHT--TCCCCGGGEEC------CCHHHHHHHHTC--CCCS--EEE--------
T ss_pred CCEEEEEeCCCCCcCHHHHHHHHHHHHHHc--CCCCCHHHeEeCCCChhHHHHHHHHHHhC-CCCCc--EEE--------
Confidence 468888865444321 245777777 44432211112445556666666666653 13343 333
Q ss_pred ccccHHHHHHHHHHHHHHhhhhhccccee---EEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHh
Q 026236 161 NFTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 237 (241)
Q Consensus 161 n~T~~d~iA~GIv~A~~~~~~~~~~~~vP---iVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~~~ 237 (241)
...|.+|.|+++|+++.+. ++| .|+-..++.. + +. ..-++... ..+..+..+.|++++
T Consensus 192 --~~~d~~a~g~~~al~~~g~-----~vP~di~vvg~d~~~~--~-----~~-~~p~lttv----~~~~~~~g~~av~~l 252 (291)
T 3egc_A 192 --TSSHRITEGAMQALNVLGL-----RYGPDVEIVSFDNLPW--M-----AF-LDPPLPVV----EQPTRRIGQEAMRML 252 (291)
T ss_dssp --ESSHHHHHHHHHHHHHHTC-----CBTTTBEEEEESCCGG--G-----GG-SSSCCCEE----ECCHHHHHHHHHHHH
T ss_pred --ECCcHHHHHHHHHHHHcCC-----CCCCceEEEEecCchh--H-----hh-cCCCceEE----EECHHHHHHHHHHHH
Confidence 2457899999999999984 555 4555555442 2 11 11233222 247888888888765
Q ss_pred h
Q 026236 238 M 238 (241)
Q Consensus 238 ~ 238 (241)
.
T Consensus 253 ~ 253 (291)
T 3egc_A 253 I 253 (291)
T ss_dssp H
T ss_pred H
Confidence 4
No 40
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=59.71 E-value=70 Score=26.02 Aligned_cols=120 Identities=10% Similarity=0.065 Sum_probs=68.3
Q ss_pred CccEEEEecCchhHH------HHHHHHHhhccCCCCcceeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEecccc
Q 026236 87 KGRIWTMVAGGGASV------IYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIA 160 (241)
Q Consensus 87 dG~Ig~mvnGaGlaM------atmD~i~~~~~gg~pANFlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~ 160 (241)
.++|+++..-.+... ...+.+..+ |-++....-+-|..+.+..+++++-+++. .+++. +++
T Consensus 139 ~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~--ai~-------- 205 (296)
T 3brq_A 139 HQEIAFLTGSMDSPTSIERLAGYKDALAQH--GIALNEKLIANGKWTPASGAEGVEMLLER-GAKFS--ALV-------- 205 (296)
T ss_dssp CCSEEEECCCTTCHHHHHHHHHHHHHHHTT--TCCCCGGGEECCCSSHHHHHHHHHHHHTC---CCS--EEE--------
T ss_pred CceEEEEcCCCCCccHHHHHHHHHHHHHHc--CCCCChhhEEeCCCChhHHHHHHHHHHhC-CCCCC--EEE--------
Confidence 478998864333221 345778777 54543221123456777778887777763 13343 333
Q ss_pred ccccHHHHHHHHHHHHHHhhhhhccccee---EEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHh
Q 026236 161 NFTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 237 (241)
Q Consensus 161 n~T~~d~iA~GIv~A~~~~~~~~~~~~vP---iVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~~~ 237 (241)
...|.+|.|+++|+++.+. ++| .|+-..++.. + +.+ .-++ ..+. .+..+..+.|++++
T Consensus 206 --~~~d~~a~g~~~al~~~g~-----~vP~di~vvg~d~~~~--~-----~~~-~p~l--ttv~--~~~~~~g~~a~~~l 266 (296)
T 3brq_A 206 --ASNDDMAIGAMKALHERGV-----AVPEQVSVIGFDDIAI--A-----PYT-VPAL--SSVK--IPVTEMIQEIIGRL 266 (296)
T ss_dssp --ESSHHHHHHHHHHHHHHTC-----CTTTTCEEEEESCCTT--G-----GGS-SSCC--EEEE--CCHHHHHHHHHHHH
T ss_pred --ECChHHHHHHHHHHHHcCC-----CCCCceEEEeecCchh--h-----hcc-CCCc--eeee--CCHHHHHHHHHHHH
Confidence 1347789999999999874 555 4555555442 2 111 1133 2222 47888888877765
Q ss_pred h
Q 026236 238 M 238 (241)
Q Consensus 238 ~ 238 (241)
.
T Consensus 267 ~ 267 (296)
T 3brq_A 267 I 267 (296)
T ss_dssp H
T ss_pred H
Confidence 3
No 41
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=58.37 E-value=83 Score=26.65 Aligned_cols=120 Identities=11% Similarity=-0.050 Sum_probs=68.3
Q ss_pred CccEEEEecCchhH-----HHHHHHHHhhccCCC-CcceeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEecccc
Q 026236 87 KGRIWTMVAGGGAS-----VIYADTVGDLGYASE-LGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIA 160 (241)
Q Consensus 87 dG~Ig~mvnGaGla-----MatmD~i~~~~~gg~-pANFlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~ 160 (241)
..+|+++..-.... -.+.+.+..+ |-. +...+-..+..+.+.-+++++-+++. .+++. +||
T Consensus 178 ~~~I~~i~~~~~~~~~~R~~Gf~~al~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~--ai~-------- 244 (339)
T 3h5o_A 178 KRRIGFLGAQLDERVMKRLDGYRAALDAA--DCRDAGLEWLDPQPSSMQMGADMLDRALAE-RPDCD--ALF-------- 244 (339)
T ss_dssp CCSEEEEEESCCHHHHHHHHHHHHHHHHT--TCCCGGGEEEECSCCCHHHHHHHHHHHHHH-CTTCC--EEE--------
T ss_pred CCeEEEEeCCCCccHHHHHHHHHHHHHHC--CCCCCChheEecCCCCHHHHHHHHHHHHcC-CCCCc--EEE--------
Confidence 46899885432211 1345777777 542 22222235667788888888888764 13343 333
Q ss_pred ccccHHHHHHHHHHHHHHhhhhhccccee---EEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHh
Q 026236 161 NFTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 237 (241)
Q Consensus 161 n~T~~d~iA~GIv~A~~~~~~~~~~~~vP---iVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~~~ 237 (241)
.-.|.+|-|+++|+++.+. ++| -|+-..++. .+ .-..-++... ..+..+..+.|+++.
T Consensus 245 --~~nD~~A~g~~~al~~~G~-----~vP~disvvgfD~~~--~~--------~~~~p~lttv--~~~~~~~g~~Av~~L 305 (339)
T 3h5o_A 245 --CCNDDLAIGALARSQQLGI-----AVPERLAIAGFNDLQ--PA--------AWCTPPLTTV--ATPRRDIGVHAAKAL 305 (339)
T ss_dssp --ESSHHHHHHHHHHHHHTTC-----CTTTTCEEECSBCCG--GG--------TTSSSCCBEE--ECCHHHHHHHHHHHH
T ss_pred --ECChHHHHHHHHHHHHcCC-----CCCCCEEEEEECCHH--HH--------hccCCCceEE--EeCHHHHHHHHHHHH
Confidence 2458899999999999984 666 344333222 22 1111122222 147888888887765
Q ss_pred h
Q 026236 238 M 238 (241)
Q Consensus 238 ~ 238 (241)
-
T Consensus 306 ~ 306 (339)
T 3h5o_A 306 L 306 (339)
T ss_dssp H
T ss_pred H
Confidence 3
No 42
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=57.88 E-value=87 Score=26.54 Aligned_cols=119 Identities=8% Similarity=-0.001 Sum_probs=68.4
Q ss_pred CccEEEEecCchhH------HHHHHHHHhhccCCCCcceeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEecccc
Q 026236 87 KGRIWTMVAGGGAS------VIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIA 160 (241)
Q Consensus 87 dG~Ig~mvnGaGla------MatmD~i~~~~~gg~pANFlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~ 160 (241)
..+|+++..-.+.. -.+.+.+..+ |-++-.-+-+-|..+.+.-+++++-+++. .+++. +||
T Consensus 177 ~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~--g~~~~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~--ai~-------- 243 (340)
T 1qpz_A 177 HREIGVIPGPLERNTGAGRLAGFMKAMEEA--MIKVPESWIVQGDFEPESGYRAMQQILSQ-PHRPT--AVF-------- 243 (340)
T ss_dssp CCCEEEECCCTTSHHHHHHHHHHHHHHHHT--TCCCCGGGBCCCCSSHHHHHHHHHHHHTS-SSCCS--EEE--------
T ss_pred CCEEEEEeCCCccccHHHHHHHHHHHHHHC--CCCCChhheEeCCCCHHHHHHHHHHHHcC-CCCCc--EEE--------
Confidence 47899885433322 1356788887 43332211223455778888888777763 12333 333
Q ss_pred ccccHHHHHHHHHHHHHHhhhhhccccee---EEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHh
Q 026236 161 NFTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 237 (241)
Q Consensus 161 n~T~~d~iA~GIv~A~~~~~~~~~~~~vP---iVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~~~ 237 (241)
.-.|.+|.|+++|+++.+. ++| -|+-..+... + +.+. -++ .... .+..+..+.|++++
T Consensus 244 --~~nd~~A~g~~~al~~~G~-----~vP~disvig~D~~~~--~-----~~~~-p~l--ttv~--~~~~~~g~~a~~~l 304 (340)
T 1qpz_A 244 --CGGDIMAMGALCAADEMGL-----RVPQDVSLIGYDNVRN--A-----RYFT-PAL--TTIH--QPKDSLGETAFNML 304 (340)
T ss_dssp --ESSHHHHHHHHHHHHHTTC-----CTTTTCEEEEEECCTT--G-----GGSS-SCC--EEEE--CCHHHHHHHHHHHH
T ss_pred --ECCHHHHHHHHHHHHHcCC-----CCCCCeEEEeECCchH--h-----hccC-Cce--eEEe--cCHHHHHHHHHHHH
Confidence 2358899999999999874 556 4555655543 2 1111 133 2221 47777777777654
No 43
>1v6t_A Hypothetical UPF0271 protein PH0986; TIM-barrel, lactam utilization protein, structural genomics; 1.70A {Pyrococcus horikoshii} SCOP: c.6.2.5
Probab=57.19 E-value=37 Score=29.80 Aligned_cols=140 Identities=13% Similarity=0.193 Sum_probs=79.2
Q ss_pred cceEEecCCccEEEEe-cCchhHH-HHHHHHHhhc--cCCCCcceeccCC------CCCHHHHHH-------HHHHHhhc
Q 026236 79 LKFTVLNPKGRIWTMV-AGGGASV-IYADTVGDLG--YASELGNYAEYSG------APNEEEVLQ-------YARVVIDC 141 (241)
Q Consensus 79 l~yv~L~~dG~Ig~mv-nGaGlaM-atmD~i~~~~--~gg~pANFlD~GG------~a~~~~v~~-------a~~iil~~ 141 (241)
+.||. .-||+|=. .|==.+| -|.-+-+.+| +|..|. |=|.-| ..+++.++. |++-+...
T Consensus 25 m~~Vt---SANIACGfHAGDp~~M~~tv~lA~~~gV~IGAHPg-ypDl~GFGRR~m~~s~~el~~~v~YQiGAL~a~a~~ 100 (255)
T 1v6t_A 25 MKYIT---SANVACGWHAGDPLVMRKTVRLAKENDVQVGAHPG-YPDLMGFGRRYMKLTPEEARNYILYQVGALYAFAKA 100 (255)
T ss_dssp TTTCS---EEEEECSSSSCCHHHHHHHHHHHHHTTCEEEEECC-CSCTTTTTCSCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhh---hhhhhccccCCCHHHHHHHHHHHHHcCCeEecCCC-CCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 55765 48887742 2222344 3445555553 344442 444444 356666543 33333332
Q ss_pred ccCCCCcceEEEEEecccccc-ccHHHHHHHHHHHHHHhhhhhcccceeEEEEecCCChhHHHHHHHHHHHHhCCCeE--
Q 026236 142 ATADPDGRKRALLIGGGIANF-TDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLE-- 218 (241)
Q Consensus 142 ~~~~~~~~~i~inI~GGI~n~-T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g~~~l~~~l~~~gi~i~-- 218 (241)
...+. -.|--.|-.-|- .+=.++|+.|++|++++.+ ++|++. +.|+..++. -++.|+++.
T Consensus 101 --~G~~l--~hVKPHGALYN~~~~d~~~A~av~~av~~~d~-----~L~l~~-l~gs~~~~~-------A~~~Gl~~~~E 163 (255)
T 1v6t_A 101 --EGLEL--QHVKPHGALYNAMVKEEDLARAVIEGILDFDK-----DLILVT-LSNSRVADI-------AEEMGLKVAHE 163 (255)
T ss_dssp --TTCCE--EEECCCHHHHHHHHHCHHHHHHHHHHHHHHCT-----TCEEEE-ETTCHHHHH-------HHHHTCCEEEE
T ss_pred --cCCEe--EEeccCHHHHHHHhhCHHHHHHHHHHHHHhCC-----CcEEEe-cCChHHHHH-------HHHcCCcEEEE
Confidence 12222 244445533221 1234689999999999974 889888 999875544 456788864
Q ss_pred EcC-----CC-------------CCHHHHHHHHHHHhhh
Q 026236 219 VYG-----PE-------------ATMTGICKQAIDCIMS 239 (241)
Q Consensus 219 ~~~-----~~-------------~~m~eav~~av~~~~~ 239 (241)
+|- ++ .+-+++++++++++++
T Consensus 164 ~FADR~Y~~dG~LvpR~~~gAvi~d~~~~~~rv~~m~~~ 202 (255)
T 1v6t_A 164 VFADRAYNPDGTLVPRGRPGAVIEDKEEIAERVISMVKD 202 (255)
T ss_dssp ECTTBCBCTTSCBCC-----CBCCCHHHHHHHHHHHHHH
T ss_pred EeeccccCCCCCEecCCCCCCccCCHHHHHHHHHHHHHC
Confidence 221 11 3778899999988764
No 44
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=56.49 E-value=82 Score=25.82 Aligned_cols=124 Identities=10% Similarity=-0.048 Sum_probs=66.6
Q ss_pred ccEEEEecCchhH------HHHHHHHHhhccCCCCcceeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEeccccc
Q 026236 88 GRIWTMVAGGGAS------VIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIAN 161 (241)
Q Consensus 88 G~Ig~mvnGaGla------MatmD~i~~~~~gg~pANFlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~n 161 (241)
|+|+++....+.. -...+.+..++.+.+... -.+.+..+.+..+++++-+++. +++..+++ .
T Consensus 128 ~~i~~i~g~~~~~~~~~R~~gf~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~---~~~~~ai~----~---- 195 (303)
T 3d02_A 128 GGYVIYVGSLTVPQHNLWADLLVKYQKEHYPDMHEVT-RRMPVAESVDDSRRTTLDLMKT---YPDLKAVV----S---- 195 (303)
T ss_dssp EEEEEECSCSSCHHHHHHHHHHHHHHHHHCTTEEESS-SCBSCTTCHHHHHHHHHHHHHH---CTTEEEEE----E----
T ss_pred ceEEEEecCCCCccHHHHHHHHHHHHHhhCCCCEEEE-eecCCCCCHHHHHHHHHHHHHh---CCCCCEEE----E----
Confidence 5888886443322 134577776621122111 0224566777777777776663 23333223 1
Q ss_pred cccHHHHHHHHHHHHHHhhhhhcccceeEEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHhh
Q 026236 162 FTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 238 (241)
Q Consensus 162 ~T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~~~~ 238 (241)
..|.+|.|+++|+++.+.. .+++|+- .. +..+. .+.+.+-.+...+. .+..+..+.|++++.
T Consensus 196 --~~d~~a~g~~~al~~~g~~---~dv~vig-~d--~~~~~----~~~~~~~~lt~tv~---~~~~~~g~~a~~~l~ 257 (303)
T 3d02_A 196 --FGSNGPIGAGRAVKEKRAK---NKVAVYG-MM--IPSQA----ASLIKSGDITEGIT---YDPATAGYALAAVAS 257 (303)
T ss_dssp --SSTTHHHHHHHHHHHTTCT---TTCEEEE-CC--CHHHH----HHHHHHTSSCEEEE---CCHHHHHHHHHHHHH
T ss_pred --eCCcchhHHHHHHHhcCCC---CCeEEEE-eC--CCHHH----HHHHHcCCeEEEEe---CCHHHHHHHHHHHHH
Confidence 3466899999999998752 2566542 22 22233 33344334542222 377887777777643
No 45
>1of8_A Phospho-2-dehydro-3-deoxyheptonate aldolase, tyrosine-inhibited; beta-alpha-barrel, lyase, synthase, synthetase; HET: PEP G3P; 1.5A {Saccharomyces cerevisiae} SCOP: c.1.10.4 PDB: 1oab_A* 1of6_A* 1hfb_A* 1ofa_A* 1ofb_A 1ofo_A 1ofp_A 1ofq_A 1ofr_A* 1og0_A*
Probab=56.34 E-value=32 Score=31.75 Aligned_cols=48 Identities=21% Similarity=0.266 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHhhhhhcccceeEEEEec---------------------CCChhHHHHHHHHHH---HHhCCCeE
Q 026236 166 ATTFNGIIRALREKESKLKAARMHIFVRRG---------------------GPNYQTGLAKMRALG---EELGIPLE 218 (241)
Q Consensus 166 d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~---------------------Gtn~~~g~~~l~~~l---~~~gi~i~ 218 (241)
.++|+.+.+.-.+++. ++++|.|.. ..+-++|++++|+++ ++.|+|+-
T Consensus 85 leyA~~Lk~~~~~~~d-----~l~iVmR~yfeKPRTs~GwKGli~dP~ld~Sf~g~~GL~i~r~ll~~v~e~GlPva 156 (370)
T 1of8_A 85 QEYALRLKKLSDELKG-----DLSIIMRAYLEKPRTTVGWKGLINDPDVNNTFNINKGLQSARQLFVNLTNIGLPIG 156 (370)
T ss_dssp HHHHHHHHHHHHHHTT-----TEEEEEECCCCCCCSSSSCCCTTTCTTSSSCCCHHHHHHHHHHHHHHHHTTTCCEE
T ss_pred HHHHHHHHHHHHhhcc-----CeEEEEEeccccccCCccccccccCCCcCCCcCHHHHHHHHHHHHHHHHHcCCceE
Confidence 4455555555555543 799999842 234489999999999 88999975
No 46
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=56.24 E-value=83 Score=25.80 Aligned_cols=123 Identities=10% Similarity=0.037 Sum_probs=66.2
Q ss_pred cEEEEecCchhHH------HHHHHHHhhccCCCCcceeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEecccccc
Q 026236 89 RIWTMVAGGGASV------IYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANF 162 (241)
Q Consensus 89 ~Ig~mvnGaGlaM------atmD~i~~~~~gg~pANFlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~n~ 162 (241)
+|+++..-.+... ...+.+..+ |-++-.-.-+-|..+.+..+++++-+++.. |.++..+|+
T Consensus 142 ~i~~i~~~~~~~~~~~R~~gf~~~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~ai~---------- 208 (309)
T 2fvy_A 142 QFVLLKGEPGHPDAEARTTYVIKELNDK--GIKTEQLQLDTAMWDTAQAKDKMDAWLSGP-NANKIEVVI---------- 208 (309)
T ss_dssp EEEEEECSTTCHHHHHHHHHHHHHHHHT--TCCEEEEEEEECTTCHHHHHHHHHHHHTST-TGGGCCEEE----------
T ss_pred EEEEEEcCCCCccHHHHHHHHHHHHHhc--CCceEEEEEecCCCCHHHHHHHHHHHHHhC-CCCCccEEE----------
Confidence 5677754333221 345788877 444322111234557777788887777641 101233233
Q ss_pred ccHHHHHHHHHHHHHHhhhhhcccceeEEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHhh
Q 026236 163 TDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 238 (241)
Q Consensus 163 T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~~~~ 238 (241)
...|.+|.|+++|+++.+. .+++|+ .-.+...+ ....+ .|-++..+. .+..+..+.|++++.
T Consensus 209 ~~~d~~a~g~~~al~~~g~----~di~vi---g~d~~~~~----~~~~~-~g~~lttv~--~~~~~~g~~a~~~l~ 270 (309)
T 2fvy_A 209 ANNDAMAMGAVEALKAHNK----SSIPVF---GVDALPEA----LALVK-SGALAGTVL--NDANNQAKATFDLAK 270 (309)
T ss_dssp ESSHHHHHHHHHHHHHTTC----TTSCEE---CSBCCHHH----HHHHH-HTSSCBEEE--CCHHHHHHHHHHHHH
T ss_pred ECCchhHHHHHHHHHHcCC----CCceEE---ecCCCHHH----HHHHH-cCCceEEEe--cCHHHHHHHHHHHHH
Confidence 2457899999999999871 257754 22233444 33332 243332222 467777777776643
No 47
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=55.42 E-value=86 Score=25.74 Aligned_cols=117 Identities=11% Similarity=0.142 Sum_probs=68.3
Q ss_pred CccEEEEecCchhHH------HHHHHHHhhccCCCCcceeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEecccc
Q 026236 87 KGRIWTMVAGGGASV------IYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIA 160 (241)
Q Consensus 87 dG~Ig~mvnGaGlaM------atmD~i~~~~~gg~pANFlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~ 160 (241)
.++|+++..-.+... ...+.+..+ |-++. +. +.|..+.+.-+++++-+++. +++..+||
T Consensus 138 ~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~--g~~~~-~~-~~~~~~~~~~~~~~~~~l~~---~~~~~ai~-------- 202 (293)
T 2iks_A 138 AETVLYLGALPELSVSFLREQGFRTAWKDD--PREVH-FL-YANSYEREAAAQLFEKWLET---HPMPQALF-------- 202 (293)
T ss_dssp CSSEEEEEECTTSHHHHHHHHHHHHHHTTC--CCCEE-EE-EESSSCHHHHHHHHHHHTTT---SCCCSEEE--------
T ss_pred CCEEEEEecCcccccHHHHHHHHHHHHHHc--CCCcc-EE-EcCCCChhhHHHHHHHHHhc---CCCCCEEE--------
Confidence 478999865433221 345777777 43432 22 23556778888888877764 23333333
Q ss_pred ccccHHHHHHHHHHHHHHhhhhhccccee---EEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHh
Q 026236 161 NFTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 237 (241)
Q Consensus 161 n~T~~d~iA~GIv~A~~~~~~~~~~~~vP---iVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~~~ 237 (241)
...|.+|.|+++|+++.+. ++| -|+-..++.. + +++ .-++... ..+..+..+.|++++
T Consensus 203 --~~~d~~a~g~~~al~~~g~-----~vP~di~vvg~d~~~~--~-----~~~---~p~lttv--~~~~~~~g~~a~~~l 263 (293)
T 2iks_A 203 --TTSFALLQGVMDVTLRRDG-----KLPSDLAIATFGDNEL--L-----DFL---QCPVLAV--AQRHRDVAERVLEIV 263 (293)
T ss_dssp --ESSHHHHHHHHHHHHHHHS-----SCCSSCEEEEESCCGG--G-----GGC---SSEEEEE--ECCHHHHHHHHHHHH
T ss_pred --ECChHHHHHHHHHHHHcCC-----CCCCceEEEEECCHHH--H-----hhc---CCCeeEE--eCCHHHHHHHHHHHH
Confidence 2458899999999999874 556 4555555432 2 111 1122222 247777777777654
No 48
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=54.57 E-value=99 Score=26.21 Aligned_cols=85 Identities=16% Similarity=0.095 Sum_probs=49.4
Q ss_pred CCCCHHHHHHHHHHHhhcccCCCCcc-eEEEEEeccccccccHHHHHHHHHHHHHHhhhhhcccceeEEEEecCCChhHH
Q 026236 124 GAPNEEEVLQYARVVIDCATADPDGR-KRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTG 202 (241)
Q Consensus 124 G~a~~~~v~~a~~iil~~~~~~~~~~-~i~inI~GGI~n~T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g 202 (241)
+..+.+..+.+.+.+++...+++++. ..++-+.|. ...+....-.+|+.+++++.+. ..++.+.-...+.+.+
T Consensus 119 ~~D~~~~g~~a~~~L~~~g~~~~~g~~~~i~~i~g~-~~~~~~~~R~~Gf~~~l~~~~~-----~~~~~~~~~~~~~~~~ 192 (350)
T 3h75_A 119 VGDDEEAGYRMLKELLHKLGPVPAGHGIELLAFSGL-KVTPAAQLRERGLRRALAEHPQ-----VHLRQLVYGEWNRERA 192 (350)
T ss_dssp ECCHHHHHHHHHHHHHHHHCCCCSSCCEEEEEEESC-TTSHHHHHHHHHHHHHHHHCTT-----EEEEEEEECTTCHHHH
T ss_pred cCChHHHHHHHHHHHHHHhhhhcCCCCceEEEEeCC-CCCHHHHHHHHHHHHHHHHCCC-----eEEEEEeeCCCcHHHH
Confidence 34455667888888877621111111 123334343 2224556667899999988762 1223344455677888
Q ss_pred HHHHHHHHHHhC
Q 026236 203 LAKMRALGEELG 214 (241)
Q Consensus 203 ~~~l~~~l~~~g 214 (241)
.+.++++|+...
T Consensus 193 ~~~~~~~L~~~~ 204 (350)
T 3h75_A 193 YRQAQQLLKRYP 204 (350)
T ss_dssp HHHHHHHHHHCT
T ss_pred HHHHHHHHHhCC
Confidence 888888888753
No 49
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=54.57 E-value=17 Score=33.37 Aligned_cols=86 Identities=12% Similarity=0.180 Sum_probs=49.9
Q ss_pred CCCCHHHHHHHHHHHhhcccCCCCcceEEEEEeccccccccHHHHHHHHHHHHHHhhhhhcccceeEEEEecCCChhHHH
Q 026236 124 GAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGL 203 (241)
Q Consensus 124 G~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~n~T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g~ 203 (241)
++.+++.+..+++.+ ++. + ++-|+||.- + +.-.+.+.++++.. +. ++ +.|...+.-
T Consensus 330 ~a~np~a~~~al~~~-----~~~--r--ii~I~g~~~---r-~~d~~~l~~~l~~~-------d~-vi--~~G~~~~~l- 385 (451)
T 3lk7_A 330 KSTNILATQKALSGF-----DNT--K--VILIAGGLD---R-GNEFDELIPDITGL-------KH-MV--VLGESASRV- 385 (451)
T ss_dssp TCCSHHHHHHHHHTS-----CGG--G--EEEEECCSC---C-SCCCGGGHHHHTTC-------SE-EE--ECSTTHHHH-
T ss_pred CCCCHHHHHHHHHhC-----CCC--C--EEEEECCCC---C-CCCHHHHHHHHHhc-------CE-EE--EECCCHHHH-
Confidence 677888888876643 222 2 344577762 2 11113444444321 22 22 246654433
Q ss_pred HHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHhhh
Q 026236 204 AKMRALGEELGIPLEVYGPEATMTGICKQAIDCIMS 239 (241)
Q Consensus 204 ~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~~~~~ 239 (241)
.+.++..|.+++.+. ++++|++.+.+.++.
T Consensus 386 ---~~~~~~~g~~~~~~~---~~~eAv~~a~~~a~~ 415 (451)
T 3lk7_A 386 ---KRAAQKAGVTYSDAL---DVRDAVHKAYEVAQQ 415 (451)
T ss_dssp ---HHHHHHTTCCEEECS---SHHHHHHHHHHHCCT
T ss_pred ---HHHHHhcCCceEEeC---CHHHHHHHHHHhCCC
Confidence 566677788877654 999999999987654
No 50
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=54.19 E-value=90 Score=25.62 Aligned_cols=119 Identities=8% Similarity=-0.010 Sum_probs=67.6
Q ss_pred CccEEEEecCchhHH------HHHHHHHhhccCCCCcc-eeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEeccc
Q 026236 87 KGRIWTMVAGGGASV------IYADTVGDLGYASELGN-YAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGI 159 (241)
Q Consensus 87 dG~Ig~mvnGaGlaM------atmD~i~~~~~gg~pAN-FlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI 159 (241)
.++|+++..-.+... ...+.+..+ |-++.. +. +-|..+.+..+++++-+++. .+++.+ ||
T Consensus 128 ~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~--g~~~~~~~~-~~~~~~~~~~~~~~~~~l~~-~~~~~a--i~------- 194 (290)
T 2rgy_A 128 HRKLAVISGPFTASDNVERLDGFFDELARH--GIARDSVPL-IESDFSPEGGYAATCQLLES-KAPFTG--LF------- 194 (290)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHHHHHHHTT--TCCGGGSCE-EECCSSHHHHHHHHHHHHHH-TCCCSE--EE-------
T ss_pred CceEEEEeCCCCCccHHHHHHHHHHHHHHc--CCCCCcccE-EecCCChhHHHHHHHHHHhC-CCCCcE--EE-------
Confidence 478999865433221 345777777 544322 22 22455777778877777664 133433 33
Q ss_pred cccccHHHHHHHHHHHHHHhhhhhccccee---EEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHH
Q 026236 160 ANFTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDC 236 (241)
Q Consensus 160 ~n~T~~d~iA~GIv~A~~~~~~~~~~~~vP---iVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~~ 236 (241)
.-.|.+|.|+++|+++.+. ++| -|+-..++.. + +.+ .-.+ .... .+..+..+.|+++
T Consensus 195 ---~~~d~~A~g~~~al~~~G~-----~vP~di~vvg~D~~~~--~-----~~~-~p~l--ttv~--~~~~~~g~~a~~~ 254 (290)
T 2rgy_A 195 ---CANDTMAVSALARFQQLGI-----SVPGDVSVIGYDDDYS--A-----AYA-APAL--TSVH--IPTAELTQNAVRW 254 (290)
T ss_dssp ---ESSHHHHHHHHHHHHHTTC-----CTTTTCEEEEEECCTT--S-----TTS-SSCC--EEEE--CCHHHHHHHHHHH
T ss_pred ---ECCcHHHHHHHHHHHHcCC-----CCCCceEEEEeCCchH--h-----ccc-CCCc--eEEe--CCHHHHHHHHHHH
Confidence 2457899999999999874 555 3555555442 2 111 1123 2222 4777777777776
Q ss_pred hh
Q 026236 237 IM 238 (241)
Q Consensus 237 ~~ 238 (241)
+.
T Consensus 255 l~ 256 (290)
T 2rgy_A 255 LI 256 (290)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 51
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=54.17 E-value=91 Score=25.65 Aligned_cols=119 Identities=8% Similarity=0.085 Sum_probs=71.3
Q ss_pred CccEEEEecCchhH-----HHHHHHHHhhccCCCCcceeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEeccccc
Q 026236 87 KGRIWTMVAGGGAS-----VIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIAN 161 (241)
Q Consensus 87 dG~Ig~mvnGaGla-----MatmD~i~~~~~gg~pANFlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~n 161 (241)
..+|+++..-.... -...+.+..+ |-.+-... +-+..+.+.-+++++-+++. +++..+||
T Consensus 126 ~~~I~~i~~~~~~~~~~R~~Gf~~al~~~--g~~~~~~~-~~~~~~~~~~~~~~~~~l~~---~~~~~ai~--------- 190 (289)
T 3k9c_A 126 HRNIAHIDGADAPGGADRRAGFLAAMDRH--GLSASATV-VTGGTTETEGAEGMHTLLEM---PTPPTAVV--------- 190 (289)
T ss_dssp CCSEEEECCTTSTTHHHHHHHHHHHHHHT--TCGGGEEE-ECCCSSHHHHHHHHHHHHTS---SSCCSEEE---------
T ss_pred CCcEEEEeCCCCccHHHHHHHHHHHHHHC--CCCCCccE-EECCCCHHHHHHHHHHHHcC---CCCCCEEE---------
Confidence 36899886544332 1345788887 44422222 33667888888888888774 23333333
Q ss_pred cccHHHHHHHHHHHHHHhhhhhccccee---EEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHhh
Q 026236 162 FTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 238 (241)
Q Consensus 162 ~T~~d~iA~GIv~A~~~~~~~~~~~~vP---iVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~~~~ 238 (241)
...|.+|.|+++|+++.+. ++| -|+-..++.. + +. ..-++ .... .+..+..+.|++++.
T Consensus 191 -~~~d~~A~g~~~al~~~g~-----~vP~di~vig~D~~~~--~-----~~-~~p~l--ttv~--~~~~~~g~~a~~~l~ 252 (289)
T 3k9c_A 191 -AFNDRCATGVLDLLVRSGR-----DVPADISVVGYDDSRL--A-----RI-PHVQM--TTIS--QDATHMAEAAVDGAL 252 (289)
T ss_dssp -ESSHHHHHHHHHHHHHTTC-----CTTTTCEEEEEECCTT--T-----TC-TTTCC--EEEE--CCHHHHHHHHHHHHH
T ss_pred -ECChHHHHHHHHHHHHcCC-----CCCCceEEEEECCHHH--H-----hc-CCCCc--ceEe--cCHHHHHHHHHHHHH
Confidence 2468899999999999884 566 4555555532 2 11 11133 2222 478888888877653
No 52
>3zxn_A RSBS, anti-sigma-factor antagonist (STAS) domain protei; transcription, gene regulation; 1.90A {Moorella thermoacetica} PDB: 2vy9_A 3ztb_A*
Probab=53.78 E-value=51 Score=24.70 Aligned_cols=78 Identities=13% Similarity=0.035 Sum_probs=44.4
Q ss_pred CcceEEEEEeccccccccHHH-HHHHHHHHHHHhhhhhcccceeEEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCC
Q 026236 147 DGRKRALLIGGGIANFTDVAT-TFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEAT 225 (241)
Q Consensus 147 ~~~~i~inI~GGI~n~T~~d~-iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~ 225 (241)
+.+.+++++-| + +-+|. .+..+....+..... . .-+.+.|-+.+-+ +.+..+|+....+....+
T Consensus 42 ~~~~vIlDlsg-V---~~iDs~g~~~L~~~~~~~~l~----G--~~~~l~Gi~p~va-----~~l~~~G~~l~~i~~~~~ 106 (123)
T 3zxn_A 42 AGKGLVIDISA-L---EVVDEFVTRVLIEISRLAELL----G--LPFVLTGIKPAVA-----ITLTEMGLDLRGMATALN 106 (123)
T ss_dssp CCSEEEEECTT-C---SSCCHHHHHHHHHHHHHHHHH----T--CCEEEECCCHHHH-----HHHHHTTCCSTTSEEESS
T ss_pred CCCEEEEEcCC-C---CcccHHHHHHHHHHHHHHHHC----C--CEEEEEcCCHHHH-----HHHHHhCCCccceEEECC
Confidence 34445667655 3 23443 345555555554421 1 2346688887776 556778875221112249
Q ss_pred HHHHHHHHHHHhhh
Q 026236 226 MTGICKQAIDCIMS 239 (241)
Q Consensus 226 m~eav~~av~~~~~ 239 (241)
+++|.+.+-+.+++
T Consensus 107 l~~Al~~l~~~~~~ 120 (123)
T 3zxn_A 107 LQKGLDKLKNLARM 120 (123)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhhh
Confidence 99999988777654
No 53
>2dfa_A Hypothetical UPF0271 protein TTHB195; lactam utilization protein, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} SCOP: c.6.2.5
Probab=53.58 E-value=35 Score=29.88 Aligned_cols=62 Identities=13% Similarity=0.243 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHhhhhhcccceeEEEEecCCChhHHHHHHHHHHHHhCCCeE--EcC-----CC-------------C
Q 026236 165 VATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLE--VYG-----PE-------------A 224 (241)
Q Consensus 165 ~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g~~~l~~~l~~~gi~i~--~~~-----~~-------------~ 224 (241)
=.++|+.|++|++++.+ ++|++. +.|+..++. -++.|+++. +|- .+ .
T Consensus 121 d~~~A~av~~av~~~d~-----~L~l~~-l~gs~~~~~-------A~~~Gl~~~~E~FADR~Y~~dG~LvpR~~~gAvi~ 187 (250)
T 2dfa_A 121 DRETARAIALAVKAFDP-----GLPLVV-LPGTVYEEE-------ARKAGLRVVLEAFPERAYLRSGQLAPRSMPGSWIT 187 (250)
T ss_dssp CHHHHHHHHHHHHHHCT-----TCCEEE-CTTSHHHHH-------HHHTTCCEEEEECTTBCBCTTSSBCCTTSTTCBCC
T ss_pred CHHHHHHHHHHHHHhCC-----CcEEEe-cCChHHHHH-------HHHcCCcEEEEEeeccccCCCCCEecCCCCCCccC
Confidence 35689999999999974 899888 888775444 456788864 221 11 3
Q ss_pred CHHHHHHHHHHHhhh
Q 026236 225 TMTGICKQAIDCIMS 239 (241)
Q Consensus 225 ~m~eav~~av~~~~~ 239 (241)
+-+++++++++++++
T Consensus 188 d~~~~~~rv~~m~~~ 202 (250)
T 2dfa_A 188 DPEEAARRALRMVLE 202 (250)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHC
Confidence 778899999988764
No 54
>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}
Probab=53.10 E-value=30 Score=29.15 Aligned_cols=67 Identities=22% Similarity=0.218 Sum_probs=40.4
Q ss_pred CCCHHHHHHHHHHHhhcccCCCCcceEEE--EEeccccccccHHHHHHHHHHHHHHhhhhhcccceeEEEEecCCChhHH
Q 026236 125 APNEEEVLQYARVVIDCATADPDGRKRAL--LIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTG 202 (241)
Q Consensus 125 ~a~~~~v~~a~~iil~~~~~~~~~~~i~i--nI~GGI~n~T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g 202 (241)
+.+.+.+.++++-+.+| +++++ |++ |-.||-+ +..++ |.++++.+... .++|||+.+.|.-..-|
T Consensus 28 ~~~~~~l~~~l~~a~~d--~~v~~--ivL~~~s~Gg~~--~~~~~----i~~~l~~~~~~---~~kPVia~v~g~a~~gG 94 (240)
T 3rst_A 28 GYNHRTFLKNLERAKDD--KTVKG--IVLKVNSPGGGV--YESAE----IHKKLEEIKKE---TKKPIYVSMGSMAASGG 94 (240)
T ss_dssp CCCHHHHHHHHHHHHHC--TTEEE--EEEEEEECCBCH--HHHHH----HHHHHHHHHHH---HCCCEEEEEEEEEETHH
T ss_pred CcCHHHHHHHHHHHHhC--CCcEE--EEEEecCCCCCH--HHHHH----HHHHHHHHHHh---CCCeEEEEECCeehHhH
Confidence 45788999999999887 44444 455 4434432 34443 44444444210 16899999988665555
Q ss_pred HH
Q 026236 203 LA 204 (241)
Q Consensus 203 ~~ 204 (241)
..
T Consensus 95 ~~ 96 (240)
T 3rst_A 95 YY 96 (240)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 55
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=52.83 E-value=1.1e+02 Score=26.19 Aligned_cols=103 Identities=9% Similarity=0.010 Sum_probs=64.8
Q ss_pred HHHHHHHhhccCCCCcc-eeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEeccccccccHHHHHHHHHHHHHHhh
Q 026236 102 IYADTVGDLGYASELGN-YAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKE 180 (241)
Q Consensus 102 atmD~i~~~~~gg~pAN-FlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~n~T~~d~iA~GIv~A~~~~~ 180 (241)
.+.+.+..+ |-.+.. ..-..+..+.+.-+++++-+++. .+.+.+ || ...|.+|-|+++|+++.+
T Consensus 227 Gf~~al~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~a--i~----------~~nD~~A~g~~~al~~~G 291 (366)
T 3h5t_A 227 GAMEVFIEA--GIDPGTVPIMECWINNRQHNFEVAKELLET-HPDLTA--VL----------CTVDALAFGVLEYLKSVG 291 (366)
T ss_dssp HHHHHHHHH--TCCGGGSCEEEESSCCHHHHHHHHHHHHHH-CTTCCE--EE----------ESSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHC--CCCCCcceEEEcCCCCHHHHHHHHHHHHcC-CCCCcE--EE----------ECCcHHHHHHHHHHHHcC
Confidence 467888888 444332 22234567788888888888774 133433 33 245889999999999998
Q ss_pred hhhccccee---EEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHhh
Q 026236 181 SKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 238 (241)
Q Consensus 181 ~~~~~~~vP---iVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~~~~ 238 (241)
. ++| -|+-..++. .+ . ..++... - .+..+..+.|++++.
T Consensus 292 ~-----~vP~disvigfD~~~--~~----~----~~~lttv-~---q~~~~~G~~Av~~L~ 333 (366)
T 3h5t_A 292 K-----SAPADLSLTGFDGTH--MA----L----ARDLTTV-I---QPNKLKGFKAGETLL 333 (366)
T ss_dssp C-----CTTTTCEEEEEECCH--HH----H----HTTCCEE-E---CCHHHHHHHHHHHHH
T ss_pred C-----CCCCceEEEEECCCh--hh----c----CCCccEE-E---eCHHHHHHHHHHHHH
Confidence 4 566 455554433 33 2 2345422 2 478888888887654
No 56
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=51.81 E-value=98 Score=25.35 Aligned_cols=81 Identities=12% Similarity=0.024 Sum_probs=51.7
Q ss_pred ccEEEEe-cCchhHH------HHHHHHHhhccCCCCcceec-cCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEeccc
Q 026236 88 GRIWTMV-AGGGASV------IYADTVGDLGYASELGNYAE-YSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGI 159 (241)
Q Consensus 88 G~Ig~mv-nGaGlaM------atmD~i~~~~~gg~pANFlD-~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI 159 (241)
++|+++. .+.+... ...+.+..+ |-..-.... .-+..+.+.-+++++-+++. +++..+++ ||.
T Consensus 133 ~~i~~~~~~~~~~~~~~~R~~Gf~~~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~a~~--i~~-- 203 (306)
T 8abp_A 133 KESAVMAITANELDTARRRTTGSMDALKAA--GFPEKQIYQVPTKSNDIPGAFDAANSMLVQ---HPEVKHWL--IVG-- 203 (306)
T ss_dssp GGEEEEEEECTTSHHHHHHHHHHHHHHHHH--TCCGGGEEEEECSSSSHHHHHHHHHHHHTT---CTTCSEEE--EEC--
T ss_pred cceEEEEecCCCChHHHHHHHHHHHHHHhc--CCCCcEEEeeccCCCChHHHHHHHHHHHHh---CCCCceEE--EEe--
Confidence 3899996 5554332 346888887 433233332 23666788888888877774 34443311 232
Q ss_pred cccccHHHHHHHHHHHHHHhhh
Q 026236 160 ANFTDVATTFNGIIRALREKES 181 (241)
Q Consensus 160 ~n~T~~d~iA~GIv~A~~~~~~ 181 (241)
-.|.+|.|+++|+++.+.
T Consensus 204 ----~nD~~A~g~~~al~~~g~ 221 (306)
T 8abp_A 204 ----MNDSTVLGGVRATEGQGF 221 (306)
T ss_dssp ----SSHHHHHHHHHHHHHTTC
T ss_pred ----CCcHHHHHHHHHHHHcCC
Confidence 458899999999999874
No 57
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=51.79 E-value=95 Score=25.19 Aligned_cols=93 Identities=9% Similarity=-0.009 Sum_probs=53.8
Q ss_pred CccEEEEecCchhH------HHHHHHHHhhccCCCCcceeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEecccc
Q 026236 87 KGRIWTMVAGGGAS------VIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIA 160 (241)
Q Consensus 87 dG~Ig~mvnGaGla------MatmD~i~~~~~gg~pANFlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~ 160 (241)
.++|+++..-.+.. -...+.+..+ |-++-.-.-+-|..+.+..+++++-+++. .+++. +++
T Consensus 126 ~~~i~~i~~~~~~~~~~~R~~g~~~~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~--ai~-------- 192 (289)
T 1dbq_A 126 HREIGVIPGPLERNTGAGRLAGFMKAMEEA--MIKVPESWIVQGDFEPESGYRAMQQILSQ-PHRPT--AVF-------- 192 (289)
T ss_dssp CCSEEEECCC------CHHHHHHHHHHHHT--TCCCCGGGBCCCCSSHHHHHHHHHHHHTS-SSCCS--EEE--------
T ss_pred CCeEEEEecCCccccHHHHHHHHHHHHHHC--CCCCChHHeEeCCCCHHHHHHHHHHHHhC-CCCCC--EEE--------
Confidence 46788875332221 2356788887 54433212223445677777777777663 13343 333
Q ss_pred ccccHHHHHHHHHHHHHHhhhhhccccee---EEEEecCCCh
Q 026236 161 NFTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNY 199 (241)
Q Consensus 161 n~T~~d~iA~GIv~A~~~~~~~~~~~~vP---iVvRl~Gtn~ 199 (241)
...|.+|.|+++|+++.+. ++| .|+-..++..
T Consensus 193 --~~~d~~a~g~~~al~~~G~-----~vP~di~vvg~d~~~~ 227 (289)
T 1dbq_A 193 --CGGDIMAMGALCAADEMGL-----RVPQDVSLIGYDNVRN 227 (289)
T ss_dssp --ESCHHHHHHHHHHHHHTTC-----CTTTTCEEEEEECCTT
T ss_pred --ECCcHHHHHHHHHHHHcCC-----CCCCceEEEeeCCchH
Confidence 1347899999999999874 455 4555666553
No 58
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=50.27 E-value=94 Score=26.53 Aligned_cols=78 Identities=10% Similarity=-0.032 Sum_probs=48.8
Q ss_pred CccEEEEecCchhH------HHHHHHHHhhccCCCCcceeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEecccc
Q 026236 87 KGRIWTMVAGGGAS------VIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIA 160 (241)
Q Consensus 87 dG~Ig~mvnGaGla------MatmD~i~~~~~gg~pANFlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~ 160 (241)
.++|+++..-.+.. -.+.+.+..+ |-++... .-|..+.+.-+++++-+++. .+.+. +||
T Consensus 179 ~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~--gi~~~~~--~~~~~~~~~~~~~~~~ll~~-~~~~~--ai~-------- 243 (349)
T 1jye_A 179 HQQIALLAGPLSSVSARLRLAGWHKYLTRN--QIQPIAE--REGDWSAMSGFQQTMQMLNE-GIVPT--AML-------- 243 (349)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHHHHHT--TCCCSEE--EECCSSHHHHHHHHHHHHHT-TCCCS--EEE--------
T ss_pred CCEEEEEeCCCCCccHHHHHHHHHHHHHHc--CCCcccc--ccCCCChHHHHHHHHHHHhC-CCCCC--EEE--------
Confidence 47899986433322 1356888888 5454322 23455677777777766663 12333 333
Q ss_pred ccccHHHHHHHHHHHHHHhhh
Q 026236 161 NFTDVATTFNGIIRALREKES 181 (241)
Q Consensus 161 n~T~~d~iA~GIv~A~~~~~~ 181 (241)
.-.|.+|-|+++|+++.+.
T Consensus 244 --~~nD~~A~g~~~al~~~G~ 262 (349)
T 1jye_A 244 --VANDQMALGAMRAITESGL 262 (349)
T ss_dssp --ESSHHHHHHHHHHHHHTTC
T ss_pred --ECChHHHHHHHHHHHHcCC
Confidence 2458899999999999874
No 59
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=48.43 E-value=68 Score=25.92 Aligned_cols=117 Identities=6% Similarity=0.014 Sum_probs=66.4
Q ss_pred CccEEEEecCc-h---h--HH-----HHHHHHHhhccCCCCcc-eeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEE
Q 026236 87 KGRIWTMVAGG-G---A--SV-----IYADTVGDLGYASELGN-YAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALL 154 (241)
Q Consensus 87 dG~Ig~mvnGa-G---l--aM-----atmD~i~~~~~gg~pAN-FlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~in 154 (241)
..+|+++..-. + . +. ...+.+..+ |-++.. +. +-|..+.+..+++++-+++. +++..+++
T Consensus 114 ~~~i~~i~~~~~~~~~~~~~~~~R~~gf~~~l~~~--g~~~~~~~~-~~~~~~~~~~~~~~~~~l~~---~~~~~ai~-- 185 (276)
T 2h0a_A 114 GPIFAIAVEEEPDRAFRRTVFAERMAGFQEALKEA--GRPFSPDRL-YITRHSQEGGRLALRHFLEK---ASPPLNVF-- 185 (276)
T ss_dssp SCEEEEEECCSCCC---CCHHHHHHHHHHHHHHHT--TCCCCGGGE-EEECSSHHHHHHHHHHHHTT---CCSSEEEE--
T ss_pred CCeEEEEecCcccccccchhHHHHHHHHHHHHHHc--CCCCChHHe-eecCCChHHHHHHHHHHHhC---CCCCCEEE--
Confidence 36888886433 3 1 11 346788887 544322 22 22445677777887777763 23333233
Q ss_pred EeccccccccHHHHHHHHHHHHHHhhhhhccccee---EEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHH
Q 026236 155 IGGGIANFTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICK 231 (241)
Q Consensus 155 I~GGI~n~T~~d~iA~GIv~A~~~~~~~~~~~~vP---iVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~ 231 (241)
...|.+|.|+++|+++.+. ++| -|+-..++.. + +.+. +. .+- .+..+..+
T Consensus 186 --------~~~d~~a~g~~~al~~~g~-----~vP~di~vvg~d~~~~--~-----~~~~---lt-tv~---~~~~~~g~ 238 (276)
T 2h0a_A 186 --------AGADQVALGVLEEAVRLGL-----TPGRDVRVLGFDGHPF--A-----EEAG---LS-TIA---QPVEAMGA 238 (276)
T ss_dssp --------CSSHHHHHHHHHHHHTTSC-----TTTTSEEEEEESCCTH--H-----HHHT---CE-EEE---CCHHHHHH
T ss_pred --------ECCcHHHHHHHHHHHHcCC-----CCCCCeEEEEeCCCch--h-----hhcc---ee-Eec---CCHHHHHH
Confidence 2457899999999999874 555 3455555442 2 1222 32 221 47777777
Q ss_pred HHHHHhh
Q 026236 232 QAIDCIM 238 (241)
Q Consensus 232 ~av~~~~ 238 (241)
.|++++.
T Consensus 239 ~a~~~l~ 245 (276)
T 2h0a_A 239 RAAQLLL 245 (276)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777643
No 60
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=47.04 E-value=1.3e+02 Score=25.44 Aligned_cols=115 Identities=17% Similarity=0.236 Sum_probs=71.2
Q ss_pred CccEEEEecCchhHH------HHHHHHHhhccCCCCcceeccC-CCCCHHHHHHHHHHHhhcccCCCCcceEEEEEeccc
Q 026236 87 KGRIWTMVAGGGASV------IYADTVGDLGYASELGNYAEYS-GAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGI 159 (241)
Q Consensus 87 dG~Ig~mvnGaGlaM------atmD~i~~~~~gg~pANFlD~G-G~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI 159 (241)
..+|+++..-.+... .+.+.+..+ |-. +-+- |..+.+.-+++++-+++. .+ +.+ ||
T Consensus 174 ~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~--g~~----~~~~~~~~~~~~~~~~~~~ll~~-~~-~~a--i~------- 236 (333)
T 3jvd_A 174 GMNIAALVGEESLSTTQERMRGISHAASIY--GAE----VTFHFGHYSVESGEEMAQVVFNN-GL-PDA--LI------- 236 (333)
T ss_dssp SCEEEEEESCTTSHHHHHHHHHHHHHHHHT--TCE----EEEEECCSSHHHHHHHHHHHHHT-CC-CSE--EE-------
T ss_pred CCeEEEEeCCCCCccHHHHHHHHHHHHHHC--CCC----EEEecCCCCHHHHHHHHHHHhcC-CC-CcE--EE-------
Confidence 478999876544322 345778777 433 3333 667888888888888875 12 333 33
Q ss_pred cccccHHHHHHHHHHHHHHhhhhhccccee---EEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHH
Q 026236 160 ANFTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDC 236 (241)
Q Consensus 160 ~n~T~~d~iA~GIv~A~~~~~~~~~~~~vP---iVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~~ 236 (241)
.-.|.+|-|+++|+++.+. ++| -|+-..++.. + +. ..-++ .... .+..+..+.|+++
T Consensus 237 ---~~nd~~A~g~~~al~~~G~-----~vP~disvig~D~~~~--~-----~~-~~p~l--ttv~--~~~~~~g~~Av~~ 296 (333)
T 3jvd_A 237 ---VASPRLMAGVMRAFTRLNV-----RVPHDVVIGGYDDPEW--Y-----SF-VGAGI--TTFV--PPHEEMGKEAVRL 296 (333)
T ss_dssp ---ECCHHHHHHHHHHHHHTTC-----CTTTTCEEEEESCCGG--G-----GG-STTSC--EEEE--CCHHHHHHHHHHH
T ss_pred ---ECCHHHHHHHHHHHHHcCC-----CCCCceEEEEECChHH--H-----Hh-cCCCc--eEEe--cCHHHHHHHHHHH
Confidence 2458899999999999984 556 4555555442 2 11 11233 2222 4788888888876
Q ss_pred hh
Q 026236 237 IM 238 (241)
Q Consensus 237 ~~ 238 (241)
..
T Consensus 297 L~ 298 (333)
T 3jvd_A 297 LV 298 (333)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 61
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=47.03 E-value=1.3e+02 Score=25.28 Aligned_cols=119 Identities=8% Similarity=0.030 Sum_probs=68.7
Q ss_pred CccEEEEecCc-hhH------HHHHHHHHhhccCCCCcceeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEeccc
Q 026236 87 KGRIWTMVAGG-GAS------VIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGI 159 (241)
Q Consensus 87 dG~Ig~mvnGa-Gla------MatmD~i~~~~~gg~pANFlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI 159 (241)
..+|+++..-. +.. -.+.+.+..+ |-++-.-+-+-|..+.+.-+++++-+++. .+++. +||
T Consensus 177 ~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~--g~~~~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~--ai~------- 244 (332)
T 2hsg_A 177 HKNIAFVSGTLEEPINHAKKVKGYKRALTES--GLPVRDSYIVEGDYTYDSGIEAVEKLLEE-DEKPT--AIF------- 244 (332)
T ss_dssp CSCEEEEESCTTSHHHHTTHHHHHHHHHHTT--TCCCCGGGEEECCSSHHHHHHHHHHHHHS-SSCCS--EEE-------
T ss_pred CCEEEEEeCCcccCccHHHHHHHHHHHHHHc--CCCCChheEEeCCCCHHHHHHHHHHHHcC-CCCCe--EEE-------
Confidence 46899986433 322 2456888888 54432211123456778888888877764 12343 333
Q ss_pred cccccHHHHHHHHHHHHHHhhhhhccccee---EEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHH
Q 026236 160 ANFTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDC 236 (241)
Q Consensus 160 ~n~T~~d~iA~GIv~A~~~~~~~~~~~~vP---iVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~~ 236 (241)
.-.|.+|.|+++|+++.+. ++| -|+-..+... + +.+ .-.+ .... .+..+..+.|+++
T Consensus 245 ---~~nd~~A~g~~~al~~~G~-----~vP~disvvg~D~~~~--~-----~~~-~p~l--ttv~--~~~~~~g~~a~~~ 304 (332)
T 2hsg_A 245 ---VGTDEMALGVIHGAQDRGL-----NVPNDLEIIGFDNTRL--S-----TMV-RPQL--TSVV--QPMYDIGAVAMRL 304 (332)
T ss_dssp ---ESSHHHHHHHHHHHHHTTC-----CHHHHCEEEEESCCGG--G-----GSS-SSCC--EEEE--CCHHHHHHHHHHH
T ss_pred ---ECChHHHHHHHHHHHHcCC-----CCCCCeEEEEECChHH--H-----hcc-CCce--eEEE--CCHHHHHHHHHHH
Confidence 1358899999999999874 556 4555554432 2 111 1123 2222 4778877777776
Q ss_pred h
Q 026236 237 I 237 (241)
Q Consensus 237 ~ 237 (241)
+
T Consensus 305 l 305 (332)
T 2hsg_A 305 L 305 (332)
T ss_dssp H
T ss_pred H
Confidence 4
No 62
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=46.92 E-value=1.3e+02 Score=25.25 Aligned_cols=124 Identities=11% Similarity=0.004 Sum_probs=0.0
Q ss_pred CccEEEEecCchhHHH------HHHHHHhhccCCCCcceeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEecccc
Q 026236 87 KGRIWTMVAGGGASVI------YADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIA 160 (241)
Q Consensus 87 dG~Ig~mvnGaGlaMa------tmD~i~~~~~gg~pANFlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~ 160 (241)
.|+|+++..-.+..-+ .++.++.+ +...--.-..-+..+.+.-++.++-+++. +++..+|+
T Consensus 128 ~~~i~~i~g~~~~~~~~~r~~g~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~~aI~-------- 194 (316)
T 1tjy_A 128 KAKVAFFYSSPTVTDQNQWVKEAKAKISQE--HPGWEIVTTQFGYNDATKSLQTAEGIIKA---YPDLDAII-------- 194 (316)
T ss_dssp SEEEEEEESCSSCHHHHHHHHHHHHHHHHH--CTTEEEEEEEECTTCHHHHHHHHHHHHHH---CSSCCEEE--------
T ss_pred CCEEEEEEcCCCChhHHHHHHHHHHHHHhh--CCCcEEEEeccCCCCHHHHHHHHHHHHHh---CCCCCEEE--------
Q ss_pred ccccHHHHHHHHHHHHHHhhhhhcccceeEEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHhhh
Q 026236 161 NFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIMS 239 (241)
Q Consensus 161 n~T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~~~~~ 239 (241)
...|.+|.|+++|+++.+ . .+++|+ .--+..+. .+.+..--+...+.. +..+..+.|++++.+
T Consensus 195 --~~nD~~A~g~~~al~~~G-~---~dv~Vv---G~D~~~~~----~~~i~~g~l~ttv~~---~~~~~g~~a~~~l~~ 257 (316)
T 1tjy_A 195 --APDANALPAAAQAAENLK-R---NNLAIV---GFSTPNVM----RPYVQRGTVKEFGLW---DVVQQGKISVYVANA 257 (316)
T ss_dssp --ECSTTHHHHHHHHHHHTT-C---CSCEEE---EBCCHHHH----HHHHHHTSCSEEEEC---CHHHHHHHHHHHHHH
T ss_pred --ECCCccHHHHHHHHHHcC-C---CCEEEE---EeCCCHHH----HHHHHCCCccEEEec---CHHHHHHHHHHHHHH
No 63
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=46.45 E-value=1e+02 Score=25.58 Aligned_cols=93 Identities=9% Similarity=-0.011 Sum_probs=50.7
Q ss_pred CCCCHHHHHHHHHHHhhcc--cCCCCcceEEEEEeccccccccHHHHHHHHHHHHHHhhhhhcccc-eeEEEEecCCChh
Q 026236 124 GAPNEEEVLQYARVVIDCA--TADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAAR-MHIFVRRGGPNYQ 200 (241)
Q Consensus 124 G~a~~~~v~~a~~iil~~~--~~~~~~~~i~inI~GGI~n~T~~d~iA~GIv~A~~~~~~~~~~~~-vPiVvRl~Gtn~~ 200 (241)
+..+.+.-+++++-+++.. .+++.+ |+ .-.|.+|.|+++|+++.+.. .+.+ +++|+-..+ ..
T Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~~~~~a--i~----------~~nd~~A~g~~~al~~~g~~-vP~d~i~vv~g~D~--~~ 245 (330)
T 3uug_A 181 LRWDPATAQARMDNLLSAYYTDAKVDA--VL----------SPYDGLSIGIISSLKGVGYG-TKDQPLPVVSGQDA--EV 245 (330)
T ss_dssp GGGCHHHHHHHHHHHHHHHCSSSCCCE--EE----------CSSHHHHHHHHHHHHHTTCS-SSSSCCCEECCSSC--CH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCeEE--EE----------ECCCchHHHHHHHHHHcCCC-CCCCceEEEEecCC--CH
Confidence 4456677788887777631 133433 33 24588999999999998841 0011 344332222 23
Q ss_pred HHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHhh
Q 026236 201 TGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 238 (241)
Q Consensus 201 ~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~~~~ 238 (241)
.+ ...++. +-++.... .+..+..+.|++++.
T Consensus 246 ~~----~~~i~~-~~~lttv~--~~~~~~g~~a~~~l~ 276 (330)
T 3uug_A 246 PS----VKSIIA-GEQYSTIF--KDTRELAKVTVNMVN 276 (330)
T ss_dssp HH----HHHHHT-TSSCCEEE--CCHHHHHHHHHHHHH
T ss_pred HH----HHHHHc-CCceEEEe--cCHHHHHHHHHHHHH
Confidence 34 222222 32222222 478887777777653
No 64
>2x5e_A UPF0271 protein PA4511; unknown function; HET: CIT; 2.30A {Pseudomonas aeruginosa} PDB: 2xu2_A*
Probab=46.37 E-value=47 Score=29.09 Aligned_cols=140 Identities=15% Similarity=0.153 Sum_probs=78.4
Q ss_pred cceEEecCCccEEEEe-cCchhHH-HHHHHHHhhc--cCCCCcceeccCC------CCCHHHHHH-------HHHHHhhc
Q 026236 79 LKFTVLNPKGRIWTMV-AGGGASV-IYADTVGDLG--YASELGNYAEYSG------APNEEEVLQ-------YARVVIDC 141 (241)
Q Consensus 79 l~yv~L~~dG~Ig~mv-nGaGlaM-atmD~i~~~~--~gg~pANFlD~GG------~a~~~~v~~-------a~~iil~~ 141 (241)
+.||. .-||+|=. .|==.+| -|.-+-+.+| +|..|. |=|.-| ..+++.++. |++-+...
T Consensus 31 m~~Vt---SANIACGfHAGDp~~M~~Tv~lA~~~gV~IGAHPg-ypDl~GFGRR~m~~s~~el~~~v~YQiGAL~a~a~~ 106 (252)
T 2x5e_A 31 MPLVD---QANLACGFHAGDPLTMRRAVELAVRHGVSIGAHPA-YPDLSGFGRRSLACSAEEVHAMVLYQIGALDAFCRS 106 (252)
T ss_dssp GGGCS---EEEEECSSSSCCHHHHHHHHHHHHHTTCEEEEECC-CSCTTTTTCSCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhh---hhhhhccccCCCHHHHHHHHHHHHHcCCeeecCCC-CCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 55765 48887742 2222444 3455555553 344442 444444 356666543 33333332
Q ss_pred ccCCCCcceEEEEEecccccc-ccHHHHHHHHHHHHHHhhhhhcccceeEEEEec---CCChhHHHHHHHHHHHHhCCCe
Q 026236 142 ATADPDGRKRALLIGGGIANF-TDVATTFNGIIRALREKESKLKAARMHIFVRRG---GPNYQTGLAKMRALGEELGIPL 217 (241)
Q Consensus 142 ~~~~~~~~~i~inI~GGI~n~-T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~---Gtn~~~g~~~l~~~l~~~gi~i 217 (241)
...+. -.|--.|-.-|- .+=.++|+.|++|++++.+ ++|++. +. |+..++. -++.|+++
T Consensus 107 --~G~~l--~hVKPHGALYN~~~~d~~~A~av~~av~~~d~-----~L~l~~-l~~~~gs~~~~~-------A~~~Gl~~ 169 (252)
T 2x5e_A 107 --LGTQV--AYVKPHGALYNDLVGDDELLRAVLDACAAYRK-----GLPLMV-LALADNGRELEL-------ADEADVPL 169 (252)
T ss_dssp --TTCCC--CEECCCHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCCEEE-ECCSCCHHHHHH-------HHHHTCCE
T ss_pred --cCCEe--EEeccCHHHHHHHhhCHHHHHHHHHHHHHhCC-----CcEEEE-eCCCCCCHHHHH-------HHHcCCcE
Confidence 12222 134334532111 1345689999999999974 899888 88 7654433 45678886
Q ss_pred E--EcC-----CC-------------CCHHHHHHHHHHHhhh
Q 026236 218 E--VYG-----PE-------------ATMTGICKQAIDCIMS 239 (241)
Q Consensus 218 ~--~~~-----~~-------------~~m~eav~~av~~~~~ 239 (241)
. +|- ++ .+-+++++++++++++
T Consensus 170 ~~E~FADR~Y~~dG~LvpR~~~gAvi~D~~~~~~rv~~m~~~ 211 (252)
T 2x5e_A 170 LFEAFADRAYLPDGRLAPRRLGGAVHHDPQRIIEQALAIARG 211 (252)
T ss_dssp EEEEESSBCBCTTSSBCCTTSTTSBCCCHHHHHHHHHHHHHT
T ss_pred EEEEeeccccCCCCCEecCCCCCCccCCHHHHHHHHHHHHHC
Confidence 4 221 11 3778899999988764
No 65
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=46.07 E-value=1.2e+02 Score=24.75 Aligned_cols=118 Identities=14% Similarity=0.087 Sum_probs=67.9
Q ss_pred CccEEEEecCchhHH------HHHHHHHhhccCCCCc-ceeccCCCCCHHHHHHHHHHHhh-cccC-CCCcceEEEEEec
Q 026236 87 KGRIWTMVAGGGASV------IYADTVGDLGYASELG-NYAEYSGAPNEEEVLQYARVVID-CATA-DPDGRKRALLIGG 157 (241)
Q Consensus 87 dG~Ig~mvnGaGlaM------atmD~i~~~~~gg~pA-NFlD~GG~a~~~~v~~a~~iil~-~~~~-~~~~~~i~inI~G 157 (241)
.++|+++..-.+... ...+.+..+ |-++. .+. +-|..+.+..+++++-+++ . .+ ++.+ ++
T Consensus 125 ~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~--g~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~-~~~~~~a--i~----- 193 (287)
T 3bbl_A 125 HRRIAILAWPEDSRVGNDRLQGYLEAMQTA--QLPIETGYI-LRGEGTFEVGRAMTLHLLDLS-PERRPTA--IM----- 193 (287)
T ss_dssp CCCEEEEECCTTCHHHHHHHHHHHHHHHHT--TCCCCGGGE-EECCSSHHHHHHHHHHHHTSC-TTTSCSE--EE-----
T ss_pred CCeEEEEeCCcccccHHHHHHHHHHHHHHc--CCCCChhhE-EeCCCCHHHHHHHHHHHHhhC-CCCCCcE--EE-----
Confidence 478998864433221 345777777 54432 222 2345577878888877776 4 13 3433 33
Q ss_pred cccccccHHHHHHHHHHHHHHhhhhhccccee---EEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHH
Q 026236 158 GIANFTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAI 234 (241)
Q Consensus 158 GI~n~T~~d~iA~GIv~A~~~~~~~~~~~~vP---iVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av 234 (241)
...|.+|.|+++|+++.+. ++| -|+-..++.. + +.+ .-.+ .... .+..+..+.|+
T Consensus 194 -----~~~d~~a~g~~~al~~~G~-----~vP~di~vig~d~~~~--~-----~~~-~p~l--ttv~--~~~~~~g~~a~ 251 (287)
T 3bbl_A 194 -----TLNDTMAIGAMAAARERGL-----TIGTDLAIIGFDDAPM--V-----QYL-FPPL--SSVR--QPIAEAGRKCI 251 (287)
T ss_dssp -----ESSHHHHHHHHHHHHHTTC-----CBTTTBEEEEESCCTT--G-----GGS-SSCC--EEEE--CCHHHHHHHHH
T ss_pred -----ECCcHHHHHHHHHHHHcCC-----CCCCCEEEEEECCchH--h-----hcc-CCCC--ceEc--CCHHHHHHHHH
Confidence 2347899999999999874 555 4555555542 2 111 1123 2222 47777777777
Q ss_pred HHh
Q 026236 235 DCI 237 (241)
Q Consensus 235 ~~~ 237 (241)
+++
T Consensus 252 ~~l 254 (287)
T 3bbl_A 252 ELL 254 (287)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 66
>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A
Probab=45.64 E-value=55 Score=27.02 Aligned_cols=57 Identities=9% Similarity=-0.059 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhhcccCCCCcceEEEEEeccccccccHHHHHHHHHHHHHHhhhhhcccceeEEEEecCCCh
Q 026236 128 EEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNY 199 (241)
Q Consensus 128 ~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~n~T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~ 199 (241)
.+.+.+.++.+-++ ++.+.+.+.||--||-+ + -+..|.++++.. ++||++-..|.-.
T Consensus 41 a~~i~~~L~~~~~~--~~~k~I~l~InSPGG~v--~----a~~~I~~~i~~~-------~~pV~~~v~g~Aa 97 (208)
T 2cby_A 41 ANRLCAQILLLAAE--DASKDISLYINSPGGSI--S----AGMAIYDTMVLA-------PCDIATYAMGMAA 97 (208)
T ss_dssp HHHHHHHHHHHHHH--CSSSCEEEEEEECCBCH--H----HHHHHHHHHHHC-------SSCEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhC--CCCCCEEEEEECCCCCH--H----HHHHHHHHHHhc-------CCCEEEEECcEeH
Confidence 45566666666554 44666667889999874 3 356677777765 4677776655433
No 67
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=44.83 E-value=61 Score=26.39 Aligned_cols=122 Identities=8% Similarity=0.069 Sum_probs=62.9
Q ss_pred CccEEEEecCchhHH-----HHHHHHHhhccCCCC--cceeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEeccc
Q 026236 87 KGRIWTMVAGGGASV-----IYADTVGDLGYASEL--GNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGI 159 (241)
Q Consensus 87 dG~Ig~mvnGaGlaM-----atmD~i~~~~~gg~p--ANFlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI 159 (241)
..+|+++..-..... ...+.+..+ |-++ ..+.+.......+..+++++-+++. .++.+..+++
T Consensus 137 ~~~i~~i~~~~~~~~~~R~~gf~~~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~ai~------- 206 (298)
T 3tb6_A 137 HTHMMGIFKADDTQGVKRMNGFIQAHRER--ELFPSPDMIVTFTTEEKESKLLEKVKATLEK-NSKHMPTAIL------- 206 (298)
T ss_dssp CCSEEEEEESSSHHHHHHHHHHHHHHHHT--TCCCCGGGEEEECHHHHTTHHHHHHHHHHHH-TTTSCCSEEE-------
T ss_pred CCcEEEEcCCCCccHHHHHHHHHHHHHHc--CCCCCcceEEEecccchhhhHHHHHHHHHhc-CCCCCCeEEE-------
Confidence 468888864433221 245788887 4443 3333332211112235555555553 1330033233
Q ss_pred cccccHHHHHHHHHHHHHHhhhhhccccee---EEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHH
Q 026236 160 ANFTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDC 236 (241)
Q Consensus 160 ~n~T~~d~iA~GIv~A~~~~~~~~~~~~vP---iVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~~ 236 (241)
...|.+|.|+++|+++.+. ++| .|+-..++. .+ +. ..-++. .+. .+..+..+.|+++
T Consensus 207 ---~~~d~~a~g~~~al~~~g~-----~vP~di~vvg~d~~~--~~-----~~-~~p~lt--tv~--~~~~~~g~~a~~~ 266 (298)
T 3tb6_A 207 ---CYNDEIALKVIDMLREMDL-----KVPEDMSIVGYDDSH--FA-----QI-SEVKLT--SVK--HPKSVLGKAAAKY 266 (298)
T ss_dssp ---CSSHHHHHHHHHHHHHTTC-----CTTTTCEEECSBCCT--HH-----HH-SSSCCB--EEE--CCTHHHHHHHHHH
T ss_pred ---EeCcHHHHHHHHHHHHcCC-----CCCCceEEEecCCcH--HH-----hc-cCCCCc--eEe--cCHHHHHHHHHHH
Confidence 2458899999999999884 555 344444432 22 11 112332 222 4677777777776
Q ss_pred hh
Q 026236 237 IM 238 (241)
Q Consensus 237 ~~ 238 (241)
+.
T Consensus 267 l~ 268 (298)
T 3tb6_A 267 VI 268 (298)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 68
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=44.54 E-value=1.3e+02 Score=24.71 Aligned_cols=120 Identities=10% Similarity=0.022 Sum_probs=69.1
Q ss_pred CccEEEEecCchhH------HHHHHHHHhhccCCCCcceeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEecccc
Q 026236 87 KGRIWTMVAGGGAS------VIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIA 160 (241)
Q Consensus 87 dG~Ig~mvnGaGla------MatmD~i~~~~~gg~pANFlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~ 160 (241)
..+|+++..-.+.. -.+.+.+..+ |-++- -+-+..+.+..+++++-+++......+..+++
T Consensus 131 ~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~--g~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai~-------- 197 (295)
T 3hcw_A 131 VDELIFITEKGNFEVSKDRIQGFETVASQF--NLDYQ---IIETSNEREVILNYMQNLHTRLKDPNIKQAII-------- 197 (295)
T ss_dssp CSEEEEEEESSCCHHHHHHHHHHHHHHHHT--TCEEE---EEEECSCHHHHHHHHHHHHHHHTCTTSCEEEE--------
T ss_pred CccEEEEcCCccchhHHHHHHHHHHHHHHc--CCCee---EEeccCCHHHHHHHHHHHHhhcccCCCCcEEE--------
Confidence 46889886544432 2345778877 44443 22345678888888887776411011222222
Q ss_pred ccccHHHHHHHHHHHHHHhhhhhccccee---EEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHh
Q 026236 161 NFTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 237 (241)
Q Consensus 161 n~T~~d~iA~GIv~A~~~~~~~~~~~~vP---iVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~~~ 237 (241)
+..|.+|.|+++|+++.+. ++| -|+-..+.. .+ + -..-++.... .+..+..+.|++++
T Consensus 198 --~~~d~~A~g~~~al~~~g~-----~vP~di~vig~D~~~--~~-----~---~~~p~lttv~--~~~~~~g~~a~~~l 258 (295)
T 3hcw_A 198 --SLDAMLHLAILSVLYELNI-----EIPKDVMTATFNDSY--LT-----E---IASPPQTCID--IKPRMLGQQAGSAI 258 (295)
T ss_dssp --ESSHHHHHHHHHHHHHTTC-----CTTTTEEEEEECCSH--HH-----H---TSSSCCEEEE--CCHHHHHHHHHHHH
T ss_pred --ECChHHHHHHHHHHHHcCC-----CCCCceEEEEeCChh--HH-----h---hCCCCeeEEE--ECHHHHHHHHHHHH
Confidence 2458899999999999884 666 344444432 22 1 1122223222 47888888887765
Q ss_pred h
Q 026236 238 M 238 (241)
Q Consensus 238 ~ 238 (241)
-
T Consensus 259 ~ 259 (295)
T 3hcw_A 259 L 259 (295)
T ss_dssp H
T ss_pred H
Confidence 3
No 69
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=43.03 E-value=59 Score=26.71 Aligned_cols=117 Identities=15% Similarity=0.095 Sum_probs=64.1
Q ss_pred CccEEEEecCchhH------HHHHHHHHhhccCCCCcceeccCCCCCHHHHHHHHHH--HhhcccCCCCcceEEEEEecc
Q 026236 87 KGRIWTMVAGGGAS------VIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARV--VIDCATADPDGRKRALLIGGG 158 (241)
Q Consensus 87 dG~Ig~mvnGaGla------MatmD~i~~~~~gg~pANFlD~GG~a~~~~v~~a~~i--il~~~~~~~~~~~i~inI~GG 158 (241)
.++|+++..-.+.. -...+.+..+ |-++- ... +..+.+..+++++- +++. .+++. +||
T Consensus 124 ~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~--g~~~~-~~~--~~~~~~~~~~~~~~~~~l~~-~~~~~--ai~------ 189 (285)
T 3c3k_A 124 KKRIALINHDLAYQYAQHRESGYLNRLKFH--GLDYS-RIS--YAENLDYMAGKLATFSLLKS-AVKPD--AIF------ 189 (285)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHHHHHHHHH--TCCCC-EEE--ECSSSSHHHHHHHHHHHHSS-SSCCS--EEE------
T ss_pred CCeEEEEeCCCccccHHHHHHHHHHHHHHc--CCCce-Eee--cCCChHHHHHHHHHHHHHcC-CCCCe--EEE------
Confidence 47899986543322 1346778888 54544 222 33345566677766 6653 13343 333
Q ss_pred ccccccHHHHHHHHHHHHHHhhhhhccccee---EEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHH
Q 026236 159 IANFTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAID 235 (241)
Q Consensus 159 I~n~T~~d~iA~GIv~A~~~~~~~~~~~~vP---iVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~ 235 (241)
.-.|.+|.|+++|+++.+. ++| -|+-..++. .+ +.+ .-.+. .+. .+..+..+.|++
T Consensus 190 ----~~~d~~A~g~~~al~~~g~-----~vP~di~vvg~d~~~--~~-----~~~-~p~lt-tv~---~~~~~~g~~a~~ 248 (285)
T 3c3k_A 190 ----AISDVLAAGAIQALTESGL-----SIPQDVAVVGFDGVD--IS-----QIT-VPALT-TVQ---QPSEQIGMKAVS 248 (285)
T ss_dssp ----ESSHHHHHHHHHHHHHTTC-----CTTTTCEEECSBCCG--GG-----GTS-SSCCB-EEE---CCHHHHHHHHHH
T ss_pred ----ECCHHHHHHHHHHHHHcCC-----CCCCceEEEEeCChH--HH-----hhc-CCCce-EEe---CCHHHHHHHHHH
Confidence 1347899999999999874 555 334333322 22 111 11232 121 477777777777
Q ss_pred Hhh
Q 026236 236 CIM 238 (241)
Q Consensus 236 ~~~ 238 (241)
++.
T Consensus 249 ~l~ 251 (285)
T 3c3k_A 249 LLL 251 (285)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 70
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=42.87 E-value=1.2e+02 Score=24.61 Aligned_cols=121 Identities=13% Similarity=0.041 Sum_probs=67.9
Q ss_pred ccEEEEecCchhHH------HHHHHHHhhccCCCCcceeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEeccccc
Q 026236 88 GRIWTMVAGGGASV------IYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIAN 161 (241)
Q Consensus 88 G~Ig~mvnGaGlaM------atmD~i~~~~~gg~pANFlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~n 161 (241)
|+|+++..-.+... ...+.+..+ .|-+-.- ..-+..+.+..+++++-+++. +++..+|+
T Consensus 136 ~~i~~i~g~~~~~~~~~R~~gf~~~l~~~--~g~~~~~-~~~~~~~~~~~~~~~~~~l~~---~~~~~ai~--------- 200 (293)
T 3l6u_A 136 GRIVEITGTANVYTTNERHRGFLKGIENE--PTLSIVD-SVSGNYDPVTSERVMRQVIDS---GIPFDAVY--------- 200 (293)
T ss_dssp EEEEEEECSTTCHHHHHHHHHHHHHHTTC--TTEEEEE-EEECTTCHHHHHHHHHHHHHT---TCCCSEEE---------
T ss_pred ceEEEEECCCCCchHHHHHHHHHHHHHhC--CCcEEee-eccCCCCHHHHHHHHHHHHHh---CCCCCEEE---------
Confidence 68999864333221 334666555 2211111 134566788888888888774 23333333
Q ss_pred cccHHHHHHHHHHHHHHhhhhhcccceeEEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHhh
Q 026236 162 FTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 238 (241)
Q Consensus 162 ~T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~~~~ 238 (241)
...|.+|.|+++|+++.+.. ++.| +-..++ ..+ ...+. .|-++..+. .+..+..+.|++++.
T Consensus 201 -~~~d~~a~g~~~al~~~g~~----di~v-ig~d~~--~~~----~~~~~-~~~~lttv~--~~~~~~g~~a~~~l~ 262 (293)
T 3l6u_A 201 -CHNDDIAMGVLEALKKAKIS----GKIV-VGIDGN--RAI----LEAVD-MKSMDATVV--QSAEEMMKVAFSALK 262 (293)
T ss_dssp -ESSHHHHHHHHHHHHHTTCC----CCEE-EEEECC--HHH----HHHHH-TTSSCEEEE--CCHHHHHHHHHHHHH
T ss_pred -ECCchHHHHHHHHHHhCCCC----CeEE-EEecCC--HHH----HHHHH-cCCccEEEe--CCHHHHHHHHHHHHH
Confidence 24588999999999998851 4443 334333 334 22222 233333322 478888888877654
No 71
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=42.85 E-value=1.4e+02 Score=24.66 Aligned_cols=121 Identities=12% Similarity=0.083 Sum_probs=65.1
Q ss_pred CccEEEEecCchhHH------HHHHHHHhhccCCCCcceeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEecccc
Q 026236 87 KGRIWTMVAGGGASV------IYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIA 160 (241)
Q Consensus 87 dG~Ig~mvnGaGlaM------atmD~i~~~~~gg~pANFlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~ 160 (241)
.++|+++..-.+... ...+.+..+ |-++... .-+..+.+..+++++-+++. .|++.+ ++
T Consensus 123 ~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~--g~~~~~~--~~~~~~~~~~~~~~~~~l~~-~~~~~a--i~-------- 187 (313)
T 2h3h_A 123 KGKVVIGTGSLTAMNSLQRIQGFKDAIKDS--EIEIVDI--LNDEEDGARAVSLAEAALNA-HPDLDA--FF-------- 187 (313)
T ss_dssp CSEEEEEESCSSCHHHHHHHHHHHHHHTTS--SCEEEEE--EECSSCHHHHHHHHHHHHHH-CTTCCE--EE--------
T ss_pred CCEEEEEECCCCCccHHHHHHHHHHHhcCC--CCEEEEe--ecCCCCHHHHHHHHHHHHHH-CcCceE--EE--------
Confidence 578998865433221 234666665 4443322 22455677777777766663 133332 33
Q ss_pred ccccHHHHHHHHHHHHHHhhhhhcccceeEEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHh
Q 026236 161 NFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 237 (241)
Q Consensus 161 n~T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~~~ 237 (241)
...|.+|.|+++|+++.+. +.+++| +-..++ ..+ .+.++. |.++..+. .+..+..+.|++++
T Consensus 188 --~~~d~~a~g~~~al~~~G~---p~dv~v-vg~d~~--~~~----~~~~~~-g~~lttv~--~~~~~~g~~av~~l 249 (313)
T 2h3h_A 188 --GVYAYNGPAQALVVKNAGK---VGKVKI-VCFDTT--PDI----LQYVKE-GVIQATMG--QRPYMMGYLSVTVL 249 (313)
T ss_dssp --ECSTTHHHHHHHHHHHTTC---TTTSEE-EEECCC--HHH----HHHHHH-TSCSEEEE--CCHHHHHHHHHHHH
T ss_pred --EcCCCccHHHHHHHHHcCC---CCCeEE-EEeCCC--HHH----HHHHHc-CCeEEEEe--cCHHHHHHHHHHHH
Confidence 1236689999999999862 224554 334333 333 233332 42222222 36777777776654
No 72
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi}
Probab=42.41 E-value=1.2e+02 Score=23.59 Aligned_cols=98 Identities=10% Similarity=0.053 Sum_probs=44.6
Q ss_pred eeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEeccccccc-cHHHHHHHHHHHHHHhhhhhcccceeEEEEecCC
Q 026236 119 YAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFT-DVATTFNGIIRALREKESKLKAARMHIFVRRGGP 197 (241)
Q Consensus 119 FlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~n~T-~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gt 197 (241)
+.| ++.+++.+..+++.+-+. .+.. +.++ +||.= .++ +-......+.++++. .+.-+++ |+
T Consensus 40 i~D--yaHnP~si~a~l~al~~~-~~~~--riiv--vf~~g-~~s~r~k~~~~~~~~~~~~-------aD~vi~~---~~ 101 (163)
T 3mvn_A 40 YDD--FAHHPTAITATIDALRAK-VGQQ--RILA--VLEPR-SNTMKMGVHKHELATSLQD-------ADSVFIY---QP 101 (163)
T ss_dssp EEE--CCCSHHHHHHHHHHHHHH-HTTS--CEEE--EECCC----------CHHHHHHHTT-------CSEEEEE---CC
T ss_pred EEc--CCCCHHHHHHHHHHHHHh-cCCC--cEEE--EECCC-CcchhhHHHHHHHHHHHhc-------CCEEEEE---CC
Confidence 455 456778888888877542 1222 2122 34311 112 322222334444432 1333332 44
Q ss_pred ChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHhhh
Q 026236 198 NYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIMS 239 (241)
Q Consensus 198 n~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~~~~~ 239 (241)
.+. . ..+.++.+..+.++.++. +.++|++.+.+.++.
T Consensus 102 ~~~-~-~~~~~~~~~~~~~~~~~~---d~~eai~~~~~~~~~ 138 (163)
T 3mvn_A 102 PTI-E-WQVSEVLANLAQPAISAD---DVDELVMRIVQQAKP 138 (163)
T ss_dssp ------CCHHHHHTTCCSCEEEES---SHHHHHHHHHHHCCT
T ss_pred CCc-c-cCHHHHHhhCCCCeEEEC---CHHHHHHHHHHhCCC
Confidence 421 1 113455555555666554 889999888887653
No 73
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=42.37 E-value=1.4e+02 Score=24.25 Aligned_cols=123 Identities=11% Similarity=-0.008 Sum_probs=67.8
Q ss_pred CccEEEEecCchhHH------HHHHHHHhhccCCCC--cceeccCCCCCHHHHHHHHHHHhhcccCCC---CcceEEEEE
Q 026236 87 KGRIWTMVAGGGASV------IYADTVGDLGYASEL--GNYAEYSGAPNEEEVLQYARVVIDCATADP---DGRKRALLI 155 (241)
Q Consensus 87 dG~Ig~mvnGaGlaM------atmD~i~~~~~gg~p--ANFlD~GG~a~~~~v~~a~~iil~~~~~~~---~~~~i~inI 155 (241)
.++|+++..-.+... ...+.+..+ +|-+ ....-.-+..+.+..+++++-+++. ++ +..+|+
T Consensus 125 ~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~ai~--- 196 (291)
T 3l49_A 125 KGNVLVFNGFYSVPVCKIRYDQMKYVLEAF--PDVKIIEPELRDVIPNTIQSAYSNVTDMLTK---YPNEGDVGAIW--- 196 (291)
T ss_dssp CEEEEEECSCTTSHHHHHHHHHHHHHHHTC--TTEEECSSCBCCCSSSHHHHHHHHHHHHHHH---CCSTTSCCEEE---
T ss_pred CceEEEEeCCCCCchHHHHHHHHHHHHHHC--CCCEEEeeeccCCCCCCHHHHHHHHHHHHHh---CCCcCCcCEEE---
Confidence 578998853333322 234677666 4321 1111123445677777777777764 23 333233
Q ss_pred eccccccccHHHHHHHHHHHHHHhhhhhcccceeEEEEecCCChhHHHHHHHHHHHHhCC--CeEEcCCCCCHHHHHHHH
Q 026236 156 GGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGI--PLEVYGPEATMTGICKQA 233 (241)
Q Consensus 156 ~GGI~n~T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g~~~l~~~l~~~gi--~i~~~~~~~~m~eav~~a 233 (241)
...|.+|.|+++|+++.+.. ++.|+ -..+ ...+ .+.+++ +. ++..+. .+..+..+.|
T Consensus 197 -------~~~d~~a~g~~~al~~~g~~----di~vv-g~d~--~~~~----~~~i~~-~~~p~lttv~--~~~~~~g~~a 255 (291)
T 3l49_A 197 -------ACWDVPMIGATQALQAAGRT----DIRTY-GVDG--SPEF----VEMVAD-PESPAGAVAA--QQPSEIGKLA 255 (291)
T ss_dssp -------ESSHHHHHHHHHHHHHTTCC----SCEEE-EEEC--CHHH----HHHHHC-TTSCEEEEEE--CCHHHHHHHH
T ss_pred -------ECCCchHHHHHHHHHHcCCC----CeEEE-EecC--CHHH----HHHHHC-CCCCeEEEEe--cCHHHHHHHH
Confidence 24588999999999998742 45544 3332 2344 333333 32 233222 4788888888
Q ss_pred HHHhh
Q 026236 234 IDCIM 238 (241)
Q Consensus 234 v~~~~ 238 (241)
++++.
T Consensus 256 v~~l~ 260 (291)
T 3l49_A 256 VQNVA 260 (291)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77653
No 74
>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A
Probab=42.19 E-value=54 Score=26.63 Aligned_cols=56 Identities=9% Similarity=-0.038 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhhcccCCCCcceEEEEEeccccccccHHHHHHHHHHHHHHhhhhhcccceeEEEEecCCC
Q 026236 128 EEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPN 198 (241)
Q Consensus 128 ~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~n~T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn 198 (241)
.+.+.+.++.+-++ ++.+...+.||--||-+ + -+..|.++++.. +.|+++-..|--
T Consensus 40 a~~i~~~L~~l~~~--~~~~~I~l~InSPGG~v--~----a~~~I~~~i~~~-------~~pV~~~v~g~A 95 (193)
T 1yg6_A 40 ANLIVAQMLFLEAE--NPEKDIYLYINSPGGVI--T----AGMSIYDTMQFI-------KPDVSTICMGQA 95 (193)
T ss_dssp HHHHHHHHHHHHHH--CSSSCEEEEEEECCBCH--H----HHHHHHHHHHHS-------SSCEEEEEEEEE
T ss_pred HHHHHHHHHHHHhc--CCCCCEEEEEECcCCCH--H----HHHHHHHHHHhc-------CCCEEEEEeeeH
Confidence 56666666666554 34566667888888875 3 345677777765 467766665533
No 75
>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A*
Probab=41.84 E-value=1.4e+02 Score=27.73 Aligned_cols=102 Identities=12% Similarity=0.069 Sum_probs=56.9
Q ss_pred CcceeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEeccccccccHHHHHHHHHHHHHHhhhhhcccceeEEEEec
Q 026236 116 LGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRG 195 (241)
Q Consensus 116 pANFlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~n~T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~ 195 (241)
|.=++|.. -+++.+..+++.+-+. . ++.+ ++-|||+.. +-|. +.+.+.+.+. .+.=+++...
T Consensus 346 ~~vi~D~A--HNp~a~~a~l~~l~~~-~--~~~~--~i~V~G~~~---dkd~--~~~~~~l~~~------~d~vilt~~~ 407 (487)
T 2vos_A 346 PTVFIDAA--HNPAGASALAQTLAHE-F--DFRF--LVGVLSVLG---DKDV--DGILAALEPV------FDSVVVTHNG 407 (487)
T ss_dssp TEEEECCC--CSHHHHHHHHHHHHHS-C--CCSE--EEEEECCBT---TBCH--HHHHHHHTTT------CSEEEECCCS
T ss_pred CeEEEECC--CCHHHHHHHHHHHHHh-c--CCCC--EEEEEEecC---CCCH--HHHHHHHHhh------CCEEEEeCCC
Confidence 44578844 5889999999888552 1 2222 455788763 2232 5666655432 1332333333
Q ss_pred CCChhHHHHHHHHHHHH-hCC-CeEEcCCCCCHHHHHHHHHHHhhh
Q 026236 196 GPNYQTGLAKMRALGEE-LGI-PLEVYGPEATMTGICKQAIDCIMS 239 (241)
Q Consensus 196 Gtn~~~g~~~l~~~l~~-~gi-~i~~~~~~~~m~eav~~av~~~~~ 239 (241)
+++.+..- .|.+++++ .+. ++.++ .++.+|++.|++.+++
T Consensus 408 ~~r~~~~~-~l~~~~~~~~~~~~~~~~---~~~~~Ai~~a~~~a~~ 449 (487)
T 2vos_A 408 SPRALDVE-ALALAAGERFGPDRVRTA---ENLRDAIDVATSLVDD 449 (487)
T ss_dssp CTTBCCHH-HHHHHHHHHHCGGGEEEC---SSHHHHHHHHHHHHHH
T ss_pred CcCCCCHH-HHHHHHHhhcCCCceEec---CCHHHHHHHHHHhccc
Confidence 44444332 22334433 242 35554 4899999999988763
No 76
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=41.67 E-value=1.5e+02 Score=24.77 Aligned_cols=78 Identities=14% Similarity=0.034 Sum_probs=48.4
Q ss_pred CccEEEEecCchhH-----HHHHHHHHhhccCC-CCcceeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEecccc
Q 026236 87 KGRIWTMVAGGGAS-----VIYADTVGDLGYAS-ELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIA 160 (241)
Q Consensus 87 dG~Ig~mvnGaGla-----MatmD~i~~~~~gg-~pANFlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~ 160 (241)
.++|+++..-.+.. -...+.+..+ |. ++.... -+..+.+.-+++++-+++. +++..+|+
T Consensus 175 ~~~I~~i~~~~~~~~~~R~~Gf~~~l~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~l~~---~~~~~ai~-------- 239 (342)
T 1jx6_A 175 HTYYSVLYFSEGYISDVRGDTFIHQVNRD--NNFELQSAY--YTKATKQSGYDAAKASLAK---HPDVDFIY-------- 239 (342)
T ss_dssp TCEEEEECCSTTHHHHHHHHHHHHHHHHH--HCCEEEEEE--CCCSSHHHHHHHHHHHHHH---CCCCSEEE--------
T ss_pred CceEEEEEcCCcchhhHHHHHHHHHHHhC--CCcEEEEEe--cCCCCHHHHHHHHHHHHHh---CCCccEEE--------
Confidence 57899886444421 1345778777 43 222222 3455778778887777764 23333333
Q ss_pred ccccHHHHHHHHHHHHHHhhh
Q 026236 161 NFTDVATTFNGIIRALREKES 181 (241)
Q Consensus 161 n~T~~d~iA~GIv~A~~~~~~ 181 (241)
...|.+|.|+++|+++.+.
T Consensus 240 --~~nd~~A~g~~~al~~~g~ 258 (342)
T 1jx6_A 240 --ACSTDVALGAVDALAELGR 258 (342)
T ss_dssp --ESSHHHHHHHHHHHHHHTC
T ss_pred --ECCChhHHHHHHHHHHcCC
Confidence 2458899999999999874
No 77
>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}
Probab=41.38 E-value=45 Score=24.40 Aligned_cols=62 Identities=6% Similarity=-0.101 Sum_probs=37.9
Q ss_pred CCcceEEEEEeccccccccHHHHHHHHHHHHHHhhhhhcccceeEEEEecCCChhHHHHHHHHHHHHhCCCe
Q 026236 146 PDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPL 217 (241)
Q Consensus 146 ~~~~~i~inI~GGI~n~T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g~~~l~~~l~~~gi~i 217 (241)
.+++.++|++++.- |..|......+.+..+++.. .++.+|.--...+.++- ++.+++.+++.
T Consensus 30 ~~gk~vll~F~a~w--C~~C~~~~~~l~~l~~~~~~----~~~~vv~vs~d~~~~~~----~~~~~~~~~~~ 91 (143)
T 4fo5_A 30 QLGRYTLLNFWAAY--DAESRARNVQLANEVNKFGP----DKIAMCSISMDEKESIF----TETVKIDKLDL 91 (143)
T ss_dssp SSCCEEEEEEECTT--CHHHHHHHHHHHHHHTTSCT----TTEEEEEEECCSCHHHH----HHHHHHHTCCG
T ss_pred hCCCEEEEEEEcCc--CHHHHHHHHHHHHHHHHhCc----CCEEEEEEEccCCHHHH----HHHHHHhCCCC
Confidence 56677888888754 36788777777666666542 23443332223344444 77788888864
No 78
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=41.13 E-value=1.2e+02 Score=25.49 Aligned_cols=117 Identities=10% Similarity=0.109 Sum_probs=66.8
Q ss_pred CccEEEEecCchhH------HHHHHHHHhhccCCCCcceeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEecccc
Q 026236 87 KGRIWTMVAGGGAS------VIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIA 160 (241)
Q Consensus 87 dG~Ig~mvnGaGla------MatmD~i~~~~~gg~pANFlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~ 160 (241)
..+|+++..-.+.. -.+.+.+..+ |-++-.-+-+-|..+.+.-+++++-+++. ++.+ +|
T Consensus 180 ~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~--g~~~~~~~~~~~~~~~~~~~~~~~~ll~~---~~~a--i~-------- 244 (332)
T 2o20_A 180 NKKIAYIMGSLKDVENTERMVGYQEALLEA--NIEFDENLVFEGNYSYEQGKALAERLLER---GATS--AV-------- 244 (332)
T ss_dssp CSSEEEECSCTTSHHHHHHHHHHHHHHHHT--TCCCCGGGEECSCCSHHHHHHHHHHHHHT---TCCE--EE--------
T ss_pred CCeEEEEeCCcccccHHHHHHHHHHHHHHc--CCCCChhhEEeCCCCHHHHHHHHHHHhcc---CCCE--EE--------
Confidence 46899886433322 2356788888 54432211123456777778888777763 2433 33
Q ss_pred ccccHHHHHHHHHHHHHHhhhhhccccee---EEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHh
Q 026236 161 NFTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 237 (241)
Q Consensus 161 n~T~~d~iA~GIv~A~~~~~~~~~~~~vP---iVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~~~ 237 (241)
.-.|.+|.|+++|+++.+. ++| -|+-..+.. .+ +.+ .-.+ .... .+..+..+.|++++
T Consensus 245 --~~~d~~A~g~~~al~~~G~-----~vP~disvig~D~~~--~~-----~~~-~p~l--ttv~--~~~~~~g~~a~~~l 305 (332)
T 2o20_A 245 --VSHDTVAVGLLSAMMDKGV-----KVPEDFEIISGANSP--IT-----QYT-YPTL--TSVN--QPLYDLGAVAMRLL 305 (332)
T ss_dssp --ESCHHHHHHHHHHHHHTTC-----CTTTTCEEEESSCCG--GG-----GSB-SSCC--EEEE--CCHHHHHHHHHHHH
T ss_pred --ECChHHHHHHHHHHHHcCC-----CCccCEEEEEeCChH--HH-----hhC-CCce--EEEe--eCHHHHHHHHHHHH
Confidence 2457899999999999874 555 344343332 22 111 1123 2222 47778777777764
No 79
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=40.92 E-value=1.5e+02 Score=29.61 Aligned_cols=112 Identities=18% Similarity=0.111 Sum_probs=68.9
Q ss_pred chhHHHHHHHHHhhccCCCCcceeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEeccccccccHHHHHHHHHHHH
Q 026236 97 GGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRAL 176 (241)
Q Consensus 97 aGlaMatmD~i~~~~~gg~pANFlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~n~T~~d~iA~GIv~A~ 176 (241)
.|.-++ -.++..+ |-+. .|.|...+++++.++++- .++++ |. +.+-. |........+++++
T Consensus 611 iG~~iV-a~~l~~~--GfeV---i~lG~~v~~eeiv~aA~e------~~adi--Vg--lSsl~---~~~~~~~~~vi~~L 671 (727)
T 1req_A 611 RGQKVI-ATAYADL--GFDV---DVGPLFQTPEETARQAVE------ADVHV--VG--VSSLA---GGHLTLVPALRKEL 671 (727)
T ss_dssp HHHHHH-HHHHHHH--TCEE---EECCTTBCHHHHHHHHHH------TTCSE--EE--EEECS---SCHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHhC--CeEE---EeCCCCCCHHHHHHHHHH------cCCCE--EE--Eeeec---HhHHHHHHHHHHHH
Confidence 454454 3455556 5566 557888888888776652 23443 23 33322 45566788899999
Q ss_pred HHhhhhhcccceeEEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHhh
Q 026236 177 REKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 238 (241)
Q Consensus 177 ~~~~~~~~~~~vPiVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~~~~ 238 (241)
++.+. .++||+| .|.-..+- .+.+++.|..- +|.+.++..++++..++..+
T Consensus 672 ~~~G~----~~i~Viv--GG~~p~~d----~~~l~~~GaD~-~f~~gt~~~e~a~~l~~~l~ 722 (727)
T 1req_A 672 DKLGR----PDILITV--GGVIPEQD----FDELRKDGAVE-IYTPGTVIPESAISLVKKLR 722 (727)
T ss_dssp HHTTC----TTSEEEE--EESCCGGG----HHHHHHTTEEE-EECTTCCHHHHHHHHHHHHH
T ss_pred HhcCC----CCCEEEE--cCCCcccc----HHHHHhCCCCE-EEcCCccHHHHHHHHHHHHH
Confidence 99874 2577766 44222222 23356778763 45667899999988877653
No 80
>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*
Probab=40.77 E-value=49 Score=29.49 Aligned_cols=46 Identities=28% Similarity=0.284 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhhhhhcccceeEEEEecC-------CChhHHHHHHHHHHHHhCCCeE
Q 026236 168 TFNGIIRALREKESKLKAARMHIFVRRGG-------PNYQTGLAKMRALGEELGIPLE 218 (241)
Q Consensus 168 iA~GIv~A~~~~~~~~~~~~vPiVvRl~G-------tn~~~g~~~l~~~l~~~gi~i~ 218 (241)
.+.-|++|+++.-. .++||.||+.. ...++..++.+. |++.|+.+.
T Consensus 204 ~~~eiv~aVR~avG----~d~pV~vRls~~~~~~~g~~~~~~~~la~~-L~~~Gvd~i 256 (349)
T 3hgj_A 204 FPLQVAQAVREVVP----RELPLFVRVSATDWGEGGWSLEDTLAFARR-LKELGVDLL 256 (349)
T ss_dssp HHHHHHHHHHHHSC----TTSCEEEEEESCCCSTTSCCHHHHHHHHHH-HHHTTCCEE
T ss_pred HHHHHHHHHHHHhc----CCceEEEEeccccccCCCCCHHHHHHHHHH-HHHcCCCEE
Confidence 45668888887532 37999999994 567777666555 677888744
No 81
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=39.66 E-value=1.5e+02 Score=23.97 Aligned_cols=120 Identities=10% Similarity=0.034 Sum_probs=65.5
Q ss_pred CccEEEEecCchhHH------HHHHHHHhhccCCCCcceeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEecccc
Q 026236 87 KGRIWTMVAGGGASV------IYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIA 160 (241)
Q Consensus 87 dG~Ig~mvnGaGlaM------atmD~i~~~~~gg~pANFlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~ 160 (241)
..+|+++..-.+... ...+.+..+ |-++- .. -+..+.+..+++++-+++. .+++..+|+
T Consensus 118 ~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~--g~~~~-~~--~~~~~~~~~~~~~~~~l~~--~~~~~~ai~-------- 182 (277)
T 3cs3_A 118 SKKVLLLSGPEKGYDSQERLAVSTRELTRF--GIPYE-II--QGDFTEPSGYAAAKKILSQ--PQTEPVDVF-------- 182 (277)
T ss_dssp CSCEEEEECCTTSHHHHHHHHHHHHHHHHT--TCCEE-EE--ECCSSHHHHHHHHHHHTTS--CCCSSEEEE--------
T ss_pred CceEEEEeCCccCccHHHHHHHHHHHHHHc--CCCee-EE--eCCCChhHHHHHHHHHHhc--CCCCCcEEE--------
Confidence 468988864433221 345777777 43433 22 3445677777777777652 023333333
Q ss_pred ccccHHHHHHHHHHHHHHhhhhhcccceeEEEEecCCC-hhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHhh
Q 026236 161 NFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPN-YQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 238 (241)
Q Consensus 161 n~T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn-~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~~~~ 238 (241)
...|.+|.|+++|+++.+. ++|==+.+.|-. ...+ +.+ .-.+ ... ..+..+..+.|++++.
T Consensus 183 --~~~d~~a~g~~~al~~~g~-----~vP~di~vvg~d~~~~~-----~~~-~p~l--ttv--~~~~~~~g~~a~~~l~ 244 (277)
T 3cs3_A 183 --AFNDEMAIGVYKYVAETNY-----QMGKDIRIIGFDNSELG-----AFV-QPRL--ATI--AYSKHRWGMVAAEKII 244 (277)
T ss_dssp --ESSHHHHHHHHHHHTTSSC-----CBTTTEEEECSSCCHHH-----HHS-SSCC--BEE--ECCHHHHHHHHHHHHH
T ss_pred --EcChHHHHHHHHHHHHcCC-----CCCCcEEEEEeCCcHHH-----hcc-CCce--eEE--ecCHHHHHHHHHHHHH
Confidence 2457899999999999874 566111122332 2222 211 1233 222 2478888888877653
No 82
>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1
Probab=39.13 E-value=63 Score=26.92 Aligned_cols=60 Identities=10% Similarity=-0.006 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhhcccCCCCcceEEEEEeccccccccHHHHHHHHHHHHHHhhhhhcccceeEEEEecCCChhHH
Q 026236 128 EEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTG 202 (241)
Q Consensus 128 ~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~n~T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g 202 (241)
.+.+.+.++.+-++ ++.+.+.+.||--||-+ +. +..|.++++.. ++||++-..|.-.--|
T Consensus 59 a~~i~~~L~~l~~~--~~~k~I~l~InSPGG~v--~a----g~~I~~~i~~~-------~~pV~t~v~G~AaS~G 118 (218)
T 1y7o_A 59 ANSVIAQLLFLDAQ--DSTKDIYLYVNTPGGSV--SA----GLAIVDTMNFI-------KADVQTIVMGMAASMG 118 (218)
T ss_dssp HHHHHHHHHHHHHH--CTTSCEEEEEEECCBCH--HH----HHHHHHHHHHS-------SSCEEEEEEEEEETHH
T ss_pred HHHHHHHHHHHHhc--CCCCCEEEEEECcCCCH--HH----HHHHHHHHHhc-------CCCEEEEEccEeHHHH
Confidence 45666667666655 44566667788888874 33 44566666665 4777777766544444
No 83
>2qv5_A AGR_C_5032P, uncharacterized protein ATU2773; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Agrobacterium tumefaciens str}
Probab=37.74 E-value=2e+02 Score=24.86 Aligned_cols=75 Identities=9% Similarity=0.152 Sum_probs=52.6
Q ss_pred CCCHHHHHHHHHHHhhcccCCCCcceEEEEEeccccccccHHHHHHHHHHHHHHhhhhhcccceeEEEEecCCChh-HHH
Q 026236 125 APNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQ-TGL 203 (241)
Q Consensus 125 ~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~n~T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~-~g~ 203 (241)
+.+.+++.+.++..++.. |+..+ +.|.-|+-. |.-....+-+.+.+++.+. +.-=.+|... .+
T Consensus 106 ~~s~~ei~~~l~~al~~v-P~a~G---vnNHmGS~~--T~~~~~M~~vm~~L~~~gL---------~FlDS~Ts~~S~a- 169 (261)
T 2qv5_A 106 GDPAKVNIDRLHRSMAKI-TNYTG---VMNYLGGRF--LAEQSALEPVMRDIGKRGL---------LFLDDGSSAQSLS- 169 (261)
T ss_dssp TSCHHHHHHHHHHHHTTC-CCCSE---EEEEECTTG--GGCHHHHHHHHHHHHHTTC---------EEEECSCCTTCCH-
T ss_pred CCCHHHHHHHHHHHHHHC-CCcEE---Eecccccch--hcCHHHHHHHHHHHHHCCC---------EEEcCCCCcccHH-
Confidence 468999999999999873 45444 668888764 7777788889999988652 3334555432 34
Q ss_pred HHHHHHHHHhCCCeE
Q 026236 204 AKMRALGEELGIPLE 218 (241)
Q Consensus 204 ~~l~~~l~~~gi~i~ 218 (241)
.++-++.|+|..
T Consensus 170 ---~~~A~~~gvp~~ 181 (261)
T 2qv5_A 170 ---GGIAKAISAPQG 181 (261)
T ss_dssp ---HHHHHHHTCCEE
T ss_pred ---HHHHHHcCCCeE
Confidence 566677899965
No 84
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=37.47 E-value=1.4e+02 Score=24.14 Aligned_cols=121 Identities=13% Similarity=0.028 Sum_probs=64.2
Q ss_pred CccEEEEecCchhHH------HHHHHHHhhccCCCCcceeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEecccc
Q 026236 87 KGRIWTMVAGGGASV------IYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIA 160 (241)
Q Consensus 87 dG~Ig~mvnGaGlaM------atmD~i~~~~~gg~pANFlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~ 160 (241)
.++|+++..-.+... ...+.+..+ |..+... +-+..+.+..+++++-+++. +++..+++
T Consensus 131 ~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~--g~~~~~~--~~~~~~~~~~~~~~~~~l~~---~~~~~ai~-------- 195 (289)
T 3brs_A 131 SGKIGVISFVKNSKTAMDREEGLKIGLSDD--SNKIEAI--YYCDSNYDKAYDGTVELLTK---YPDISVMV-------- 195 (289)
T ss_dssp SCEEEEEESCTTSHHHHHHHHHHHHHHGGG--GGGEEEE--EECTTCHHHHHHHHHHHHHH---CTTEEEEE--------
T ss_pred CceEEEEECCCCCccHHHHHHHHHHHHHhC--CCcEEee--ecCCCCHHHHHHHHHHHHHh---CCCceEEE--------
Confidence 468999865433222 245677776 4432111 23455777777777766663 23333233
Q ss_pred ccccHHHHHHHHHHHHHHhhhhhcccceeEEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHh
Q 026236 161 NFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 237 (241)
Q Consensus 161 n~T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~~~ 237 (241)
...|.+|.|+++|+++.+.. .++.| +-..+... + .+.+..-.+...+- .+..+..+.|++++
T Consensus 196 --~~~d~~a~g~~~al~~~G~~---~di~v-vg~d~~~~--~----~~~~~~~~l~ttv~---~~~~~~g~~a~~~l 257 (289)
T 3brs_A 196 --GLNQYSATGAARAIKDMSLE---AKVKL-VCIDSSME--Q----IQYLEEGIFEAMVV---QKPFNIGYLGVEKA 257 (289)
T ss_dssp --ESSHHHHHHHHHHHHHTTCT---TTSEE-EEEESCSC--C---------CCSCCEEEE---CCHHHHHHHHHHHH
T ss_pred --ECCCcchHHHHHHHHhcCCC---CCEEE-EEECCCHH--H----HHHHHCCceEEEEe---cChHHHHHHHHHHH
Confidence 23478999999999998752 24654 44444432 1 11122112311221 36777777777654
No 85
>3r8n_K 30S ribosomal protein S11; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_K 3fih_K* 3iy8_K 3j18_K* 2wwl_K 3oar_K 3oaq_K 3ofb_K 3ofa_K 3ofp_K 3ofx_K 3ofy_K 3ofo_K 3r8o_K 4a2i_K 4gd1_K 4gd2_K 3i1m_K 1vs7_K* 3e1a_C ...
Probab=37.12 E-value=40 Score=25.94 Aligned_cols=47 Identities=13% Similarity=0.182 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHhhhhhcccceeEEEEecCCChhHHHHHHHHHHHHhCCCeEEc
Q 026236 166 ATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVY 220 (241)
Q Consensus 166 d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~ 220 (241)
...|+-+.+.+++++. ..+.|+||=.|+..|.+ -+.|...|+.|...
T Consensus 52 ~~aa~~~~~~~~~~Gi----~~v~v~vkG~G~Gr~~a----iraL~~~Gl~I~~I 98 (117)
T 3r8n_K 52 QVAAERCADAVKEYGI----KNLEVMVKGPGPGREST----IRALNAAGFRITNI 98 (117)
T ss_dssp HHHHHHHHHHHTTSCC----CEEEEEEECSSSSTTHH----HHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHhCC----cEEEEEEeCCCccHHHH----HHHHHhCCCEEEEE
Confidence 3446666776777664 46778888888888999 44556789887643
No 86
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}
Probab=36.85 E-value=1.2e+02 Score=22.13 Aligned_cols=60 Identities=3% Similarity=-0.036 Sum_probs=32.6
Q ss_pred CCcceEEEEEeccccccccHHHHHHHHHHHHHHhhhhhcccceeEEEEecCCChhHHHHHHHHHHHHhCCC
Q 026236 146 PDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIP 216 (241)
Q Consensus 146 ~~~~~i~inI~GGI~n~T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g~~~l~~~l~~~gi~ 216 (241)
.+++.++|++++.- |..|-.....+.+..+++.. .++. |+.+.-...++. ++.+++.+++
T Consensus 22 ~~gk~vlv~F~a~w--C~~C~~~~~~l~~l~~~~~~----~~v~-vv~v~~d~~~~~----~~~~~~~~~~ 81 (151)
T 3raz_A 22 LKAPVRIVNLWATW--CGPCRKEMPAMSKWYKAQKK----GSVD-MVGIALDTSDNI----GNFLKQTPVS 81 (151)
T ss_dssp CCSSEEEEEEECTT--CHHHHHHHHHHHHHHHTSCT----TTEE-EEEEESSCHHHH----HHHHHHSCCS
T ss_pred hCCCEEEEEEEcCc--CHHHHHHHHHHHHHHHHhcc----CCeE-EEEEECCChHHH----HHHHHHcCCC
Confidence 45666788887643 36677777766666666532 2343 344444444443 4545544443
No 87
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=36.38 E-value=2.1e+02 Score=24.81 Aligned_cols=79 Identities=13% Similarity=0.052 Sum_probs=56.6
Q ss_pred EEEEEeccccccccHHHHHHHHHHHHHHhh----------h---hhcccceeEEEEecCCChhHHHHHHHHHHHHhCCCe
Q 026236 151 RALLIGGGIANFTDVATTFNGIIRALREKE----------S---KLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPL 217 (241)
Q Consensus 151 i~inI~GGI~n~T~~d~iA~GIv~A~~~~~----------~---~~~~~~vPiVvRl~Gtn~~~g~~~l~~~l~~~gi~i 217 (241)
++|-+-||. +|-.+..=+.+++.+.. . .+...++|+|.=-.|-...+-.+..+++.++.|+++
T Consensus 56 i~vafSGGK----DS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vv~iDtg~~fpet~~fv~~~~~~ygl~l 131 (306)
T 2wsi_A 56 ISFSYNGGK----DCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRLPTVFIDQEETFPTLENFVLETSERYCLSL 131 (306)
T ss_dssp EEEECCSCH----HHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCEEEEECCCTTCCHHHHHHHHHHHHHTTEEE
T ss_pred EEEEecCCH----HHHHHHHHHHHHHhhhcccccccccccccccccCCCCeeEEEEeCCCCCHHHHHHHHHHHHHcCCCE
Confidence 567777998 88888887777765431 0 000236887777789999999999999999999999
Q ss_pred EEcCCC----CCHHHHHHHH
Q 026236 218 EVYGPE----ATMTGICKQA 233 (241)
Q Consensus 218 ~~~~~~----~~m~eav~~a 233 (241)
+++.+. ..|.+++...
T Consensus 132 ~v~~~~~~~~~~l~~~~~~~ 151 (306)
T 2wsi_A 132 YESQRQSGASVNMADAFRDF 151 (306)
T ss_dssp EECCC-----CCHHHHHHHH
T ss_pred EEEeCCccccccHHHHHHHH
Confidence 877643 2577776644
No 88
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*
Probab=36.34 E-value=1.8e+02 Score=24.86 Aligned_cols=84 Identities=11% Similarity=0.077 Sum_probs=49.2
Q ss_pred cCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEe-----cccccc-ccHHHHHHHHHHHHHHhhhhhcccceeEEEEec
Q 026236 122 YSGAPNEEEVLQYARVVIDCATADPDGRKRALLIG-----GGIANF-TDVATTFNGIIRALREKESKLKAARMHIFVRRG 195 (241)
Q Consensus 122 ~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~-----GGI~n~-T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~ 195 (241)
++| .+.+...++++.+... ..+. .+-||+. |+- .+ .+.+ ...-+++++++.- ++||+|++.
T Consensus 100 i~g-~~~~~~~~~a~~~~~~---g~d~-~iein~~~P~~~g~~-~~g~~~e-~~~~iv~~vr~~~------~~Pv~vKi~ 166 (311)
T 1jub_A 100 IAG-MSAAENIAMLKKIQES---DFSG-ITELNLSCPNVPGEP-QLAYDFE-ATEKLLKEVFTFF------TKPLGVKLP 166 (311)
T ss_dssp ECC-SSHHHHHHHHHHHHHS---CCCS-EEEEESCCCCSSSCC-CGGGCHH-HHHHHHHHHTTTC------CSCEEEEEC
T ss_pred cCC-CCHHHHHHHHHHHHhc---CCCe-EEEEeccCCCCCCcc-cccCCHH-HHHHHHHHHHHhc------CCCEEEEEC
Confidence 444 5678899999888653 2230 3577864 111 01 1223 2356677776642 699999998
Q ss_pred CCChhHHHHHHHHHHHHhCCCeE
Q 026236 196 GPNYQTGLAKMRALGEELGIPLE 218 (241)
Q Consensus 196 Gtn~~~g~~~l~~~l~~~gi~i~ 218 (241)
.....+.+.-+-+.+++.|+...
T Consensus 167 ~~~~~~~~~~~a~~~~~~G~d~i 189 (311)
T 1jub_A 167 PYFDLVHFDIMAEILNQFPLTYV 189 (311)
T ss_dssp CCCSHHHHHHHHHHHTTSCCCEE
T ss_pred CCCCHHHHHHHHHHHHHcCCcEE
Confidence 76433333333456777888643
No 89
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=36.18 E-value=1.7e+02 Score=23.59 Aligned_cols=119 Identities=12% Similarity=0.112 Sum_probs=68.3
Q ss_pred ccEEEEecCchhHH------HHHHHHHhhccCCCCcceeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEeccccc
Q 026236 88 GRIWTMVAGGGASV------IYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIAN 161 (241)
Q Consensus 88 G~Ig~mvnGaGlaM------atmD~i~~~~~gg~pANFlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~n 161 (241)
++|+++..-.+... ...+.+..+ |-++-.. .-|..+.+.-+++++-+++. .+.+.+ ||
T Consensus 124 ~~I~~i~g~~~~~~~~~R~~Gf~~al~~~--g~~~~~~--~~~~~~~~~~~~~~~~ll~~-~~~~~a--i~--------- 187 (271)
T 2dri_A 124 AKVIELQGIAGTSAARERGEGFQQAVAAH--KFNVLAS--QPADFDRIKGLNVMQNLLTA-HPDVQA--VF--------- 187 (271)
T ss_dssp CEEEEEECCTTCHHHHHHHHHHHHHHHHH--TCEEEEE--EECTTCHHHHHHHHHHHHHH-CTTCCE--EE---------
T ss_pred CeEEEEECCCCCccHhHHHHHHHHHHhcC--CCEEEEe--cCCCCCHHHHHHHHHHHHHh-CCCccE--EE---------
Confidence 58998853233222 245788777 4443221 23556777778887777764 133332 33
Q ss_pred cccHHHHHHHHHHHHHHhhhhhcccceeEEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHh
Q 026236 162 FTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 237 (241)
Q Consensus 162 ~T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~~~ 237 (241)
...|.+|-|+++|+++.+. .++.| +-..+ ...+ ...++. +-++.... .+..+..+.|++++
T Consensus 188 -~~nD~~A~g~~~al~~~g~----~dv~v-vGfD~--~~~~----~~~~~~-~p~lttv~--~~~~~~g~~a~~~l 248 (271)
T 2dri_A 188 -AQNDEMALGALRALQTAGK----SDVMV-VGFDG--TPDG----EKAVND-GKLAATIA--QLPDQIGAKGVETA 248 (271)
T ss_dssp -ESSHHHHHHHHHHHHHHTC----CSCEE-EEEEC--CHHH----HHHHHT-TSSCEEEE--CCHHHHHHHHHHHH
T ss_pred -ECCCcHHHHHHHHHHHcCC----CCcEE-EEecC--CHHH----HHHHHc-CCcEEEEe--cCHHHHHHHHHHHH
Confidence 2568899999999999874 25554 33433 3444 332222 32333222 47788777777764
No 90
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=36.13 E-value=1.8e+02 Score=23.83 Aligned_cols=79 Identities=13% Similarity=0.114 Sum_probs=49.9
Q ss_pred CCCCHHHHHHHHHHHhhcccCCCCcceEEEEEeccccccccHHHHHHHHHHHHHHhhhhhcccceeEEEEecCCChhHHH
Q 026236 124 GAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGL 203 (241)
Q Consensus 124 G~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~n~T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g~ 203 (241)
+..+.+..+.+.+.+.+.. + .+.+ +.-+.|. ...+....-.+|+.+++++.+ ++++....+...+.+.
T Consensus 109 ~~D~~~~g~~a~~~l~~~g-~-~~~~--i~~i~g~-~~~~~~~~R~~Gf~~~l~~~g-------~~~~~~~~~~~~~~~~ 176 (297)
T 3rot_A 109 GSDNLLAGKKLGEKALELT-P-SAKR--ALVLNPQ-PGHIGLEKRAYGIKTILQDKG-------IFFEELDVGTDPNQVQ 176 (297)
T ss_dssp ECCHHHHHHHHHHHHHHHC-T-TCCE--EEEEESC-TTCHHHHHHHHHHHHHHHHTT-------CEEEEEECCSCHHHHH
T ss_pred ccChHHHHHHHHHHHHHhc-C-CCce--EEEEeCC-CCcHHHHHHHHHHHHHHHhcC-------CeEEEeecCCChHHHH
Confidence 3345666888888888761 1 1222 2233343 222455567889999999874 4444444667778898
Q ss_pred HHHHHHHHHhC
Q 026236 204 AKMRALGEELG 214 (241)
Q Consensus 204 ~~l~~~l~~~g 214 (241)
+.++++|+...
T Consensus 177 ~~~~~~l~~~~ 187 (297)
T 3rot_A 177 SRVKSYFKIHP 187 (297)
T ss_dssp HHHHHHHHHCT
T ss_pred HHHHHHHHhCC
Confidence 88888887754
No 91
>2vqe_K 30S ribosomal protein S11, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.55.4.1 PDB: 1gix_N* 1hnw_K* 1hnx_K* 1hnz_K* 1hr0_K 1ibk_K* 1ibl_K* 1ibm_K 1j5e_K 1jgo_N* 1jgp_N* 1jgq_N* 1ml5_N* 1n32_K* 1n33_K* 1n34_K 1n36_K 1xmo_K* 1xmq_K* 1xnq_K* ...
Probab=33.94 E-value=58 Score=25.50 Aligned_cols=46 Identities=9% Similarity=0.064 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhhhhhcccceeEEEEecCCChhHHHHHHHHHHHHhCCCeEEc
Q 026236 167 TTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVY 220 (241)
Q Consensus 167 ~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~ 220 (241)
..|+-+.+.+++++. ..+.|+||=.|+.-|.+ -+.|..+|+.|...
T Consensus 63 ~aa~~~~~~~~~~Gi----~~v~V~vkG~G~Gre~a----iraL~~~Gl~I~~I 108 (129)
T 2vqe_K 63 LAALDAAKKAMAYGM----QSVDVIVRGTGAGREQA----IRALQASGLQVKSI 108 (129)
T ss_dssp HHHHHHHHHHHTTTC----CEEEEEEESCCTTHHHH----HHHHHTSSSEEEEC
T ss_pred HHHHHHHHHHHHhCC----eEEEEEEECCCCCHHHH----HHHHHHCCCEEEEE
Confidence 456777777777764 35778888788888888 55566679877643
No 92
>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1
Probab=33.91 E-value=2.3e+02 Score=24.46 Aligned_cols=87 Identities=20% Similarity=0.163 Sum_probs=51.3
Q ss_pred CCCcceeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEe-----------c-cccccccHHHHHHHHHHHHHHhhh
Q 026236 114 SELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIG-----------G-GIANFTDVATTFNGIIRALREKES 181 (241)
Q Consensus 114 g~pANFlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~-----------G-GI~n~T~~d~iA~GIv~A~~~~~~ 181 (241)
|.|. ++.++| .+++.+.++.+.+... ...|-||.. | .+. .+.+ ...-|++++++.-
T Consensus 58 ~~~~-~~QL~g-~~~~~~~~aa~~a~~~------~d~Iein~gcP~~~~r~~~~G~~l~--~~~~-~~~eiv~~v~~~~- 125 (318)
T 1vhn_A 58 ERNV-AVQIFG-SEPNELSEAARILSEK------YKWIDLNAGCPVRKVVKEGAGGALL--KDLR-HFRYIVRELRKSV- 125 (318)
T ss_dssp CTTE-EEEEEC-SCHHHHHHHHHHHTTT------CSEEEEEECCCCHHHHHTTCGGGGG--SCHH-HHHHHHHHHHHHC-
T ss_pred CCeE-EEEeCC-CCHHHHHHHHHHHHHh------CCEEEEECCCCcHhcCCCCcccchh--hCHH-HHHHHHHHHHHhh-
Confidence 3443 466664 4678999999988542 333455642 2 222 2333 4556788887653
Q ss_pred hhcccceeEEEEec-CCChhHHHHHHHHHHHHhCCCeE
Q 026236 182 KLKAARMHIFVRRG-GPNYQTGLAKMRALGEELGIPLE 218 (241)
Q Consensus 182 ~~~~~~vPiVvRl~-Gtn~~~g~~~l~~~l~~~gi~i~ 218 (241)
++||.||+. |...++..+.. +.+++.|+...
T Consensus 126 -----~~pv~vKir~G~~~~~~~~~a-~~l~~~G~d~i 157 (318)
T 1vhn_A 126 -----SGKFSVKTRLGWEKNEVEEIY-RILVEEGVDEV 157 (318)
T ss_dssp -----SSEEEEEEESCSSSCCHHHHH-HHHHHTTCCEE
T ss_pred -----CCCEEEEecCCCChHHHHHHH-HHHHHhCCCEE
Confidence 589999987 44433333333 44677887644
No 93
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=32.63 E-value=2e+02 Score=23.35 Aligned_cols=119 Identities=10% Similarity=-0.010 Sum_probs=68.3
Q ss_pred CccEEEEecCchhH------HHHHHHHHhhccCCCCcceeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEecccc
Q 026236 87 KGRIWTMVAGGGAS------VIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIA 160 (241)
Q Consensus 87 dG~Ig~mvnGaGla------MatmD~i~~~~~gg~pANFlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~ 160 (241)
.++|+++..-.+.. -...+.+..+ |-++..-.-+-|..+.+..+++++-+++. +++.+ ++
T Consensus 125 ~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~a--i~-------- 190 (290)
T 3clk_A 125 HRQIGIAGIDQYPYTGRKRLAGYKKALKEA--NIAINQEWIKPGDYSYTSGEQAMKAFGKN--TDLTG--II-------- 190 (290)
T ss_dssp CCSEEEESCCCCTTTHHHHHHHHHHHHHHT--TCCCCGGGEECCCSSHHHHHHHHHHHCTT--CCCSE--EE--------
T ss_pred CCEEEEEeCCCCCcchHHHHHHHHHHHHHc--CCCCCcceEEcCCCChhhHHHHHHHHhcc--CCCcE--EE--------
Confidence 46888885432321 1346778777 54432211123455677777777777652 44543 33
Q ss_pred ccccHHHHHHHHHHHHHHhhhhhccccee---EEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHh
Q 026236 161 NFTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 237 (241)
Q Consensus 161 n~T~~d~iA~GIv~A~~~~~~~~~~~~vP---iVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~~~ 237 (241)
...|.+|.|+++|+++.+. ++| -|+-..++.. + +.+ .-.+ .... .+..+..+.|++++
T Consensus 191 --~~~d~~a~g~~~al~~~g~-----~vP~di~vvg~d~~~~--~-----~~~-~p~l--ttv~--~~~~~~g~~av~~l 251 (290)
T 3clk_A 191 --AASDMTAIGILNQASSFGI-----EVPKDLSIVSIDGTEM--C-----KIT-RPQL--TSIS--QDFFQMGVTGVQQI 251 (290)
T ss_dssp --ESSHHHHHHHHHHHHHTTC-----CTTTTCEEEEEECCTH--H-----HHS-SSCC--EEEE--CCHHHHHHHHHHHH
T ss_pred --ECCcHHHHHHHHHHHHcCC-----CCCCceEEEEeCChHH--H-----hhc-CCCc--eEEe--cCHHHHHHHHHHHH
Confidence 1347899999999999874 555 4555555542 2 111 1223 2222 47888888887765
Q ss_pred h
Q 026236 238 M 238 (241)
Q Consensus 238 ~ 238 (241)
.
T Consensus 252 ~ 252 (290)
T 3clk_A 252 H 252 (290)
T ss_dssp H
T ss_pred H
Confidence 3
No 94
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=32.32 E-value=2.1e+02 Score=23.52 Aligned_cols=125 Identities=13% Similarity=0.074 Sum_probs=69.9
Q ss_pred CCccEEEEecCchhH------HHHHHHHHhhccCCCC-cceec--cCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEe
Q 026236 86 PKGRIWTMVAGGGAS------VIYADTVGDLGYASEL-GNYAE--YSGAPNEEEVLQYARVVIDCATADPDGRKRALLIG 156 (241)
Q Consensus 86 ~dG~Ig~mvnGaGla------MatmD~i~~~~~gg~p-ANFlD--~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~ 156 (241)
..++|+++..-.+.. -...+.+..+ |-.| -.+.+ +.+..+.+..+++++-+++... ++..+++
T Consensus 122 G~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~ai~---- 193 (313)
T 3m9w_A 122 PQGNYFLMGGSPVDNNAKLFRAGQMKVLKPY--VDSGKIKVVGDQWVDGWLPENALKIMENALTANN--NKIDAVV---- 193 (313)
T ss_dssp SSEEEEEEESCTTCHHHHHHHHHHHHHHHHH--HHTTSEEEEEEEECGGGCHHHHHHHHHHHHHHTT--TCCCEEE----
T ss_pred CCCcEEEEECCCCCccHHHHHHHHHHHHHhh--ccCCCEEEEeeccCCCcCHHHHHHHHHHHHHhCC--CCeeEEE----
Confidence 357899986444432 2345777776 3222 11211 2455678888888888887511 3333333
Q ss_pred ccccccccHHHHHHHHHHHHHHhhhhhcccceeEEEEecCCC-hhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHH
Q 026236 157 GGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPN-YQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAID 235 (241)
Q Consensus 157 GGI~n~T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn-~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~ 235 (241)
...|.+|.|+++|+++.+.. .++.|+ |.. ...+ .+.++. |-++.... .+..+..+.|++
T Consensus 194 ------~~~d~~a~g~~~al~~~G~~---~di~vi----g~d~~~~~----~~~~~~-~p~lttv~--~~~~~~g~~av~ 253 (313)
T 3m9w_A 194 ------ASNDATAGGAIQALSAQGLS---GKVAIS----GQDADLAG----IKRIAA-GTQTMTVY--KPITLLANTAAE 253 (313)
T ss_dssp ------ESSHHHHHHHHHHHHTTTCT---TTSEEC----CCSCCHHH----HHHHHH-TSSCCEEE--CCHHHHHHHHHH
T ss_pred ------ECCCchHHHHHHHHHHcCCC---CCcEEE----ecCCCHHH----HHHHHc-CCeEEEEe--cCHHHHHHHHHH
Confidence 24588999999999998752 244433 333 3444 333322 32322222 478888887777
Q ss_pred Hhh
Q 026236 236 CIM 238 (241)
Q Consensus 236 ~~~ 238 (241)
++.
T Consensus 254 ~l~ 256 (313)
T 3m9w_A 254 IAV 256 (313)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 95
>2qkf_A 3-deoxy-D-manno-octulosonic acid 8- phosphate SYN; manno-octulosonate, synthase, lipopolysaccharide, KDOP, KDO8 KDO8PS; 1.75A {Neisseria meningitidis serogroup B} PDB: 3stf_A 3qpy_A 3ste_A 3qpz_A 3qq0_A 3fyo_A* 3qq1_A 3fyp_A* 3stc_A 3stg_A 1phw_A 1g7v_A* 1gg0_A 1phq_A* 1d9e_A 1pl9_A* 1q3n_A* 1x6u_A* 1x8f_A 1g7u_A*
Probab=32.08 E-value=1e+02 Score=26.92 Aligned_cols=49 Identities=20% Similarity=0.272 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhhhhhcccceeEEEE-------------ecCCChhHHHHHHHHHHHHhCCCeE
Q 026236 167 TTFNGIIRALREKESKLKAARMHIFVR-------------RGGPNYQTGLAKMRALGEELGIPLE 218 (241)
Q Consensus 167 ~iA~GIv~A~~~~~~~~~~~~vPiVvR-------------l~Gtn~~~g~~~l~~~l~~~gi~i~ 218 (241)
+.|.-+++++++.+... .++++.| .+|...++|++.|+++.++.|+|+.
T Consensus 29 e~a~~~a~~lk~~ga~~---~~~~v~k~~f~k~prts~~~~~g~~l~~gl~~l~~~~~~~Gl~~~ 90 (280)
T 2qkf_A 29 DSTLQTCAHYVEVTRKL---GIPYIFKASFDKANRSSIHSYRGVGLEEGLKIFEKVKAEFGIPVI 90 (280)
T ss_dssp HHHHHHHHHHHHHHHHH---TCCEEEEEESCCSSCSSSSSCCCSCHHHHHHHHHHHHHHHCCCEE
T ss_pred HHHHHHHHHHHHhhhhc---ceeEEEeeeeecCCCCChHHhhccchHHHHHHHHHHHHHcCCcEE
Confidence 35566666666654322 2565666 3344468999999999999999976
No 96
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=31.48 E-value=2e+02 Score=22.90 Aligned_cols=123 Identities=11% Similarity=-0.029 Sum_probs=68.6
Q ss_pred CccEEEEecCchhHH------HHHHHHHhhccCCCCcceeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEecccc
Q 026236 87 KGRIWTMVAGGGASV------IYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIA 160 (241)
Q Consensus 87 dG~Ig~mvnGaGlaM------atmD~i~~~~~gg~pANFlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~ 160 (241)
.++|+++..-.+... ...+.+..+ +|-+-.. -.-+..+.+..+++++-+++. +++..+++
T Consensus 127 ~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~l~~---~~~~~ai~-------- 192 (276)
T 3ksm_A 127 ERNIALLRLRAGNASTDQREQGFLDVLRKH--DKIRIIA-APYAGDDRGAARSEMLRLLKE---TPTIDGLF-------- 192 (276)
T ss_dssp CEEEEECBCCTTCHHHHHHHHHHHHHHTTC--TTEEEEE-CCBCCSSHHHHHHHHHHHHHH---CSCCCEEE--------
T ss_pred CceEEEEEcCCCchhHHHHHHHHHHHHHhC--CCcEEEE-EecCCCcHHHHHHHHHHHHHh---CCCceEEE--------
Confidence 578888864333322 234666555 3322222 234556788888888877764 23333233
Q ss_pred ccccHHHHHHHHHHHHHHhhhhhcccceeEEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHhh
Q 026236 161 NFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 238 (241)
Q Consensus 161 n~T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~~~~ 238 (241)
...|.+|.|+++|+++.+. +.++. |+-..++ ..+ .+.+..-.+...+- .+..+..+.|++++.
T Consensus 193 --~~~d~~a~g~~~al~~~g~---p~di~-vig~d~~--~~~----~~~~~~~~l~ttv~---~~~~~~g~~a~~~l~ 255 (276)
T 3ksm_A 193 --TPNESTTIGALVAIRQSGM---SKQFG-FIGFDQT--EEL----EAAMYAGEISNLVV---QNPEYMGYLAVQRAL 255 (276)
T ss_dssp --CCSHHHHHHHHHHHHHTTC---TTSSE-EEEESCC--HHH----HHHHHTTSSSEEEE---CCHHHHHHHHHHHHH
T ss_pred --ECCchhhhHHHHHHHHcCC---CCCeE-EEEeCCC--HHH----HHHHHcCCceEEEE---eCHHHhHHHHHHHHH
Confidence 2458899999999999873 22444 4444433 333 23333322211222 477888888777654
No 97
>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*
Probab=31.47 E-value=85 Score=27.89 Aligned_cols=44 Identities=23% Similarity=0.249 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhhhhhcccceeEEEEecCC-------ChhHHHHHHHHHHHHhCCCeE
Q 026236 168 TFNGIIRALREKESKLKAARMHIFVRRGGP-------NYQTGLAKMRALGEELGIPLE 218 (241)
Q Consensus 168 iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gt-------n~~~g~~~l~~~l~~~gi~i~ 218 (241)
.+.-|++|+++.- +.||.||+... ..++..++.+. |++.|+.+.
T Consensus 196 ~~~eiv~avr~~v------~~pv~vRls~~~~~~~g~~~~~~~~la~~-L~~~Gvd~i 246 (340)
T 3gr7_A 196 FLGEVIDAVREVW------DGPLFVRISASDYHPDGLTAKDYVPYAKR-MKEQGVDLV 246 (340)
T ss_dssp HHHHHHHHHHHHC------CSCEEEEEESCCCSTTSCCGGGHHHHHHH-HHHTTCCEE
T ss_pred HHHHHHHHHHHhc------CCceEEEeccccccCCCCCHHHHHHHHHH-HHHcCCCEE
Confidence 4566788887753 69999999954 45666665544 678898744
No 98
>3p04_A Uncharacterized BCR; SEPF homolog, DUF552, PSI-biology, NESG, structural genomics structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=31.41 E-value=56 Score=23.91 Aligned_cols=29 Identities=10% Similarity=-0.090 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhhhhhcccceeEEEEecCCChhHHHHH
Q 026236 169 FNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAK 205 (241)
Q Consensus 169 A~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g~~~ 205 (241)
|+.|++++++ +.|||+=|++...++|.|+
T Consensus 18 a~~I~d~Lr~--------~~~VvvNL~~ld~~~AqRi 46 (87)
T 3p04_A 18 AQVIGGAFRD--------GDAVVFDMSLLSREEARRI 46 (87)
T ss_dssp HHHHHHHHHT--------TCCEEEECTTSCHHHHHHH
T ss_pred HHHHHHHHHC--------CCEEEEECCCCCHHHHHHH
Confidence 4567777775 5899999999999999333
No 99
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=31.03 E-value=2.2e+02 Score=23.35 Aligned_cols=116 Identities=11% Similarity=0.001 Sum_probs=60.4
Q ss_pred CccEEEEecCchhHH------HHHHHHHhhccCCCCcceeccCCCCCHHHHHHHHHHH-hhcccCCCCcceEEEEEeccc
Q 026236 87 KGRIWTMVAGGGASV------IYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVV-IDCATADPDGRKRALLIGGGI 159 (241)
Q Consensus 87 dG~Ig~mvnGaGlaM------atmD~i~~~~~gg~pANFlD~GG~a~~~~v~~a~~ii-l~~~~~~~~~~~i~inI~GGI 159 (241)
..+|+++..-.+... ...+.+..+ |-++-... -+..+ + .+++++-+ ++. +++..+||
T Consensus 144 ~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~--g~~~~~~~--~~~~~-~-~~~~~~~~~l~~---~~~~~ai~------- 207 (305)
T 3huu_A 144 HRHILFLQESGHYAVTEDRSVGFKQYCDDV--KISNDCVV--IKSMN-D-LRDFIKQYCIDA---SHMPSVII------- 207 (305)
T ss_dssp CCSEEEEEESSCBHHHHHHHHHHHHHHHHT--TCCCCEEE--ECSHH-H-HHHHC-----------CCCSEEE-------
T ss_pred CCeEEEEcCCcccchhHHHHHHHHHHHHHc--CCCcccEE--ecCcH-H-HHHHHHHhhhcC---CCCCCEEE-------
Confidence 468888865444322 345777777 44433322 22222 2 55555555 552 23333333
Q ss_pred cccccHHHHHHHHHHHHHHhhhhhccccee---EEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHH
Q 026236 160 ANFTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDC 236 (241)
Q Consensus 160 ~n~T~~d~iA~GIv~A~~~~~~~~~~~~vP---iVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~~ 236 (241)
...|.+|.|+++|+++.+. ++| -|+-..++. .+ + -..-++.... .+..+..+.|+++
T Consensus 208 ---~~nd~~A~g~~~al~~~g~-----~vP~di~vig~D~~~--~~-----~---~~~p~lttv~--~~~~~~g~~av~~ 267 (305)
T 3huu_A 208 ---TSDVMLNMQLLNVLYEYQL-----RIPEDIQTATFNTSF--LT-----E---NATPSQTSVN--INPDVLGFTAGNT 267 (305)
T ss_dssp ---ESSHHHHHHHHHHHHHTTC-----CTTTTCEEEEESCSH--HH-----H---TSSSCCEEEE--CCHHHHHHHHHHH
T ss_pred ---ECChHHHHHHHHHHHHcCC-----CCCcceEEEEECCcc--hh-----h---hcCCcceEEe--cCHHHHHHHHHHH
Confidence 2458899999999999884 566 455555432 22 1 1121222222 4788888888876
Q ss_pred hh
Q 026236 237 IM 238 (241)
Q Consensus 237 ~~ 238 (241)
+.
T Consensus 268 l~ 269 (305)
T 3huu_A 268 II 269 (305)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 100
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=30.52 E-value=2.2e+02 Score=23.10 Aligned_cols=120 Identities=11% Similarity=0.104 Sum_probs=64.3
Q ss_pred CccEEEEecCchhHH------HHHHHHHhhccCCCCcceec-cCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEeccc
Q 026236 87 KGRIWTMVAGGGASV------IYADTVGDLGYASELGNYAE-YSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGI 159 (241)
Q Consensus 87 dG~Ig~mvnGaGlaM------atmD~i~~~~~gg~pANFlD-~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI 159 (241)
.++|+++..-.+... ...+.+..+ .|-+ +.. .-+..+.+.-+++++-+++. .|++.+ |+
T Consensus 123 ~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~--~~~~--~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~a--i~------- 188 (283)
T 2ioy_A 123 KGNVVELEGIPGASAARDRGKGFDEAIAKY--PDIK--IVAKQAADFDRSKGLSVMENILQA-QPKIDA--VF------- 188 (283)
T ss_dssp CEEEEEEECCTTCHHHHHHHHHHHHHHTTC--TTEE--EEEEEECTTCHHHHHHHHHHHHHH-CSCCCE--EE-------
T ss_pred CceEEEEECCCCCccHHHHHHHHHHHHHhC--CCCE--EEeeccCCCCHHHHHHHHHHHHHh-CCCccE--EE-------
Confidence 468988864333322 234555544 2211 111 23455677777777766653 133332 33
Q ss_pred cccccHHHHHHHHHHHHHHhhhhhcccceeEEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHh
Q 026236 160 ANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 237 (241)
Q Consensus 160 ~n~T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~~~ 237 (241)
...|.+|.|+++|+++.+. .++.|+ -..++ ..+ .+.+.. +-++.... .+..+..+.|++++
T Consensus 189 ---~~nD~~A~g~~~al~~~G~----~di~vi-G~D~~--~~~----~~~~~~-~~~lttv~--~~~~~~g~~a~~~l 249 (283)
T 2ioy_A 189 ---AQNDEMALGAIKAIEAANR----QGIIVV-GFDGT--EDA----LKAIKE-GKMAATIA--QQPALMGSLGVEMA 249 (283)
T ss_dssp ---ESSHHHHHHHHHHHHHTTC----CCCEEE-EEECC--HHH----HHHHHT-TSCCEEEE--CCHHHHHHHHHHHH
T ss_pred ---ECCchHHHHHHHHHHHCCC----CCcEEE-EeCCC--HHH----HHHHHc-CCeEEEEe--cCHHHHHHHHHHHH
Confidence 2458899999999999874 256544 34332 333 222222 32222222 47777777777654
No 101
>1xw8_A UPF0271 protein YBGL; NESG, northeast structural genomics consortium, structural genomics, protein structure initiative, PSI, X-RAY; 2.00A {Escherichia coli} SCOP: c.6.2.5
Probab=30.48 E-value=66 Score=28.14 Aligned_cols=140 Identities=14% Similarity=0.154 Sum_probs=74.1
Q ss_pred cceEEecCCccEEEEe-cCchhHH-HHHHHHHhhc--cCCCCcceeccCC------CCCHHHHHH-------HHHHHhhc
Q 026236 79 LKFTVLNPKGRIWTMV-AGGGASV-IYADTVGDLG--YASELGNYAEYSG------APNEEEVLQ-------YARVVIDC 141 (241)
Q Consensus 79 l~yv~L~~dG~Ig~mv-nGaGlaM-atmD~i~~~~--~gg~pANFlD~GG------~a~~~~v~~-------a~~iil~~ 141 (241)
+.||. .-||+|=. .|==.+| -|.-+-+.+| +|..|. |=|.-| ..+++.++. |++-+...
T Consensus 20 m~~Vt---SANIACGfHAGDp~~M~~Tv~lA~~~gV~IGAHPg-ypDl~GFGRR~m~~s~~el~~~v~YQiGAL~a~a~~ 95 (252)
T 1xw8_A 20 LTLVS---SANIACGFHAGDAQIMQACVREAIKNGVAIGAHPS-FPDRENFGRSAMQLPPETVYAQTLYQIGALATIARA 95 (252)
T ss_dssp HHHCS---EEEEECSSSSCCHHHHHHHHHHHHHHTCEEEEECC-CC-------CCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhh---hHHHhhcccCCCHHHHHHHHHHHHHcCCeeecCCC-CCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 55665 47887732 2222344 3445555553 344442 344433 356666543 33333332
Q ss_pred ccCCCCcceEEEEEecccccc-ccHHHHHHHHHHHHHHhhhhhcccceeEEEEecCCChhHHHHHHHHHHHHhCCCeE--
Q 026236 142 ATADPDGRKRALLIGGGIANF-TDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLE-- 218 (241)
Q Consensus 142 ~~~~~~~~~i~inI~GGI~n~-T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g~~~l~~~l~~~gi~i~-- 218 (241)
...+. -.|--.|-.-|- .+=.++|+.|++|++++.+ ++|++. +.|+..++. -++.|+++.
T Consensus 96 --~G~~l--~hVKPHGALYN~~a~d~~~A~av~~av~~~d~-----~L~l~~-l~gs~~~~~-------A~~~Gl~~~~E 158 (252)
T 1xw8_A 96 --QGGVM--RHVKPHGMLYNQAAKEAQLADAIARAVYACDP-----ALILVG-LAGSELIRA-------GKQYGLTTREE 158 (252)
T ss_dssp --TTCCE--EEECCCHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCEEEE-ETTSHHHHH-------HHHTTCCEEEE
T ss_pred --cCCEe--EEeCcCHHHHHHHhhCHHHHHHHHHHHHHhCC-----CcEEEe-cCChHHHHH-------HHHcCCcEEEE
Confidence 12222 244334532111 1335689999999999974 899888 998875544 456788864
Q ss_pred EcC-----CC-------------CCHHHHHHHHHHHhhh
Q 026236 219 VYG-----PE-------------ATMTGICKQAIDCIMS 239 (241)
Q Consensus 219 ~~~-----~~-------------~~m~eav~~av~~~~~ 239 (241)
+|- ++ .+-+++++++++++++
T Consensus 159 ~FADR~Y~~dG~LvpR~~~gAvi~d~~~~~~rv~~m~~~ 197 (252)
T 1xw8_A 159 VFADRGYQADGSLVPRSQSGALIENEEQALAQTLEMVQH 197 (252)
T ss_dssp ECTTSCBCTTSSBCCTTTCC-----CTTHHHHHHHHHHH
T ss_pred EeeccccCCCCCEeccCCCCCccCCHHHHHHHHHHHHHC
Confidence 221 11 2456688888877754
No 102
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=29.63 E-value=1.6e+02 Score=26.06 Aligned_cols=60 Identities=20% Similarity=0.164 Sum_probs=41.8
Q ss_pred HHHHHhhccCCCCcceeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEeccccccccHHHHHHHHHHHH
Q 026236 104 ADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRAL 176 (241)
Q Consensus 104 mD~i~~~~~gg~pANFlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~n~T~~d~iA~GIv~A~ 176 (241)
.+.+... |-+..-|-++.++|+.+.+.++.+.+.+. +.+ .+|-++||.+ .| +|+.+.-.+
T Consensus 52 ~~~L~~~--g~~~~~~~~~~~~p~~~~v~~~~~~~~~~---~~d---~IIavGGGsv----~D-~aK~iA~~~ 111 (386)
T 1rrm_A 52 TDKMDAA--GLAWAIYDGVVPNPTITVVKEGLGVFQNS---GAD---YLIAIGGGSP----QD-TCKAIGIIS 111 (386)
T ss_dssp HHHHHHT--TCEEEEECBCCSSCBHHHHHHHHHHHHHH---TCS---EEEEEESHHH----HH-HHHHHHHHH
T ss_pred HHHHHHc--CCeEEEECCccCCCCHHHHHHHHHHHHhc---CcC---EEEEeCChHH----HH-HHHHHHHHH
Confidence 3445555 44556677889999999999999999764 344 4778999873 33 666665544
No 103
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=29.28 E-value=1.4e+02 Score=25.98 Aligned_cols=70 Identities=13% Similarity=0.014 Sum_probs=42.7
Q ss_pred EEEeccccccccHHHHHHHHHHHHHHhhhhhcccceeEEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHH
Q 026236 153 LLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQ 232 (241)
Q Consensus 153 inI~GGI~n~T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~ 232 (241)
+-++||-. -...+.+.+.+++..+.. ..-..|+-..|.+..+. +++.+++.++++.+++..++|.+....
T Consensus 183 ilv~gGs~---g~~~~~~~~~~al~~l~~----~~~~~vi~~~G~~~~~~---~~~~~~~~~~~~~v~~f~~dm~~~l~~ 252 (365)
T 3s2u_A 183 LLVLGGSL---GAEPLNKLLPEALAQVPL----EIRPAIRHQAGRQHAEI---TAERYRTVAVEADVAPFISDMAAAYAW 252 (365)
T ss_dssp EEECCTTT---TCSHHHHHHHHHHHTSCT----TTCCEEEEECCTTTHHH---HHHHHHHTTCCCEEESCCSCHHHHHHH
T ss_pred EEEECCcC---CccccchhhHHHHHhccc----ccceEEEEecCcccccc---ccceecccccccccccchhhhhhhhcc
Confidence 34455532 334466778888887653 11223444667654332 366778888888888777888876544
No 104
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=29.26 E-value=1.9e+02 Score=23.43 Aligned_cols=117 Identities=9% Similarity=-0.037 Sum_probs=63.6
Q ss_pred cCCccEEEEecCchhHH------HHHHHHHhhccCCCCcceeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEecc
Q 026236 85 NPKGRIWTMVAGGGASV------IYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGG 158 (241)
Q Consensus 85 ~~dG~Ig~mvnGaGlaM------atmD~i~~~~~gg~pANFlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GG 158 (241)
....+|+++..-.+... ...+.+..+ |-++-.-. .-|..+ +++++-+++. .+++.+ |+
T Consensus 120 ~G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~--g~~~~~~~-~~~~~~----~~~~~~~l~~-~~~~~a--i~------ 183 (277)
T 3hs3_A 120 KKIEKVLIQHWPLSLPTIRERIEAMTAEASKL--KIDYLLEE-TPENNP----YISAQSALNK-SNQFDA--II------ 183 (277)
T ss_dssp TTCCEEEEEESCTTSHHHHHHHHHHHHHHHHT--TCEEEEEE-CCSSCH----HHHHHHHHHT-GGGCSE--EE------
T ss_pred hCCCEEEEEeCCCcCccHHHHHHHHHHHHHHC--CCCCCCCC-ccCCch----HHHHHHHHcC-CCCCCE--EE------
Confidence 34679999965544322 345778777 44332211 122222 5555555553 133433 33
Q ss_pred ccccccHHHHHHHHHHHHHHhhhhhccccee---EEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHH
Q 026236 159 IANFTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAID 235 (241)
Q Consensus 159 I~n~T~~d~iA~GIv~A~~~~~~~~~~~~vP---iVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~ 235 (241)
...|.+|.|+++|+++.+. ++| -|+-..++. .+ +.+ .-++. ... .+..+..+.|++
T Consensus 184 ----~~~d~~A~g~~~al~~~g~-----~vP~di~vig~d~~~--~~-----~~~-~p~lt--tv~--~~~~~~g~~av~ 242 (277)
T 3hs3_A 184 ----TVNDLYAAEIIKEAKRRNL-----KIPDDFQLVGYDNNI--LC-----GYT-SPTIS--TID--QNPKLIGQTAAH 242 (277)
T ss_dssp ----CSSHHHHHHHHHHHHHTTC-----CTTTTCEEECSBCCG--GG-----GTS-SSCCB--EEE--CCHHHHHHHHHH
T ss_pred ----ECCHHHHHHHHHHHHHcCC-----CCCCceEEEeeCCcH--HH-----hcC-CCCcc--EEe--cCHHHHHHHHHH
Confidence 2458899999999999884 555 344344332 22 111 11332 222 478888888887
Q ss_pred Hhh
Q 026236 236 CIM 238 (241)
Q Consensus 236 ~~~ 238 (241)
++.
T Consensus 243 ~l~ 245 (277)
T 3hs3_A 243 RLL 245 (277)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 105
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=28.92 E-value=98 Score=28.06 Aligned_cols=70 Identities=16% Similarity=0.272 Sum_probs=43.8
Q ss_pred EEecCchhHHHHHHHHHhh-ccCCCCcceeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEeccccccccHHHHHH
Q 026236 92 TMVAGGGASVIYADTVGDL-GYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFN 170 (241)
Q Consensus 92 ~mvnGaGlaMatmD~i~~~-~~gg~pANFlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~n~T~~d~iA~ 170 (241)
+++.+.++.=...|-+... .-|-+. -|.++.|.++.+.+.++.+.+.+. +.+ .+|-|+||.+ +| +|+
T Consensus 56 liVtd~~~~~~~~~~v~~~L~~g~~~-~~~~~~~~p~~~~v~~~~~~~~~~---~~d---~IIavGGGs~----~D-~AK 123 (387)
T 3uhj_A 56 LVLIDRVLFDALSERIGKSCGDSLDI-RFERFGGECCTSEIERVRKVAIEH---GSD---ILVGVGGGKT----AD-TAK 123 (387)
T ss_dssp EEEECTTTHHHHHHHC------CCEE-EEEECCSSCSHHHHHHHHHHHHHH---TCS---EEEEESSHHH----HH-HHH
T ss_pred EEEECchHHHHHHHHHHHHHHcCCCe-EEEEcCCCCCHHHHHHHHHHHhhc---CCC---EEEEeCCcHH----HH-HHH
Confidence 4455665543455544322 111133 688999999999999999998764 343 4789999973 33 566
Q ss_pred HHH
Q 026236 171 GII 173 (241)
Q Consensus 171 GIv 173 (241)
.|.
T Consensus 124 ~iA 126 (387)
T 3uhj_A 124 IVA 126 (387)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 106
>1ka5_A Phosphocarrier protein HPR; open faced beta-sandwich, structural proteomics in europe, spine, structural genomics, ligand transport; NMR {Staphylococcus aureus} SCOP: d.94.1.1 PDB: 1qr5_A 1txe_A
Probab=28.85 E-value=64 Score=23.11 Aligned_cols=29 Identities=10% Similarity=0.218 Sum_probs=24.2
Q ss_pred ceeEEEEecCCChhHHHHHHHHHHHHhCC
Q 026236 187 RMHIFVRRGGPNYQTGLAKMRALGEELGI 215 (241)
Q Consensus 187 ~vPiVvRl~Gtn~~~g~~~l~~~l~~~gi 215 (241)
.-.|.++..|+.++++++-|.+++++.|+
T Consensus 58 G~~i~i~a~G~De~~A~~~l~~l~~~~~~ 86 (88)
T 1ka5_A 58 DAEITIYADGSDESDAIQAISDVLSKEGL 86 (88)
T ss_dssp TCEEEEEEESSSHHHHHHHHHHHHHHHTS
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHcCC
Confidence 46689999999999999999888886554
No 107
>1i96_V Translation initiation factor IF3; 30S ribosome; HET: WO2; 4.20A {Thermus thermophilus} SCOP: d.68.1.1
Probab=28.78 E-value=93 Score=22.75 Aligned_cols=41 Identities=22% Similarity=0.309 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhhhhhcccceeEEEEecCCC---hhHHHHHHHHHHHHh
Q 026236 167 TTFNGIIRALREKESKLKAARMHIFVRRGGPN---YQTGLAKMRALGEEL 213 (241)
Q Consensus 167 ~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn---~~~g~~~l~~~l~~~ 213 (241)
.=++-+.++|++-. ++.+.||..|-. .+.|.++|.++.++.
T Consensus 18 ~K~k~a~~FL~~Gd------KVKvti~fRGRE~~h~e~g~~lL~r~~~~l 61 (89)
T 1i96_V 18 TKLGHIKRFLQEGH------KVKVTIMFRGREVAHPELGERILNRVTEDL 61 (89)
T ss_pred HHHHHHHHHHHCCC------EEEEEEEECCccccCHHHHHHHHHHHHHHh
Confidence 33566667776543 899999999954 788988887777664
No 108
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}
Probab=28.51 E-value=1.7e+02 Score=21.26 Aligned_cols=65 Identities=3% Similarity=-0.127 Sum_probs=39.9
Q ss_pred CCcceEEEEEecccccccc--HHHHHHHHHHHHHHh-hhhhcccceeEEEEecCCChhHHHHHHHHHHHHhCCCeEEc
Q 026236 146 PDGRKRALLIGGGIANFTD--VATTFNGIIRALREK-ESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVY 220 (241)
Q Consensus 146 ~~~~~i~inI~GGI~n~T~--~d~iA~GIv~A~~~~-~~~~~~~~vPiVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~ 220 (241)
.+++.++|+++..- |.. |-.....+.+..+++ .. .++.+|.--...+.++- ++.+++.++++.++
T Consensus 31 ~~gk~vll~F~a~~--C~~v~C~~~~~~l~~l~~~~~~~----~~~~~v~v~~d~~~~~~----~~~~~~~~~~~~~~ 98 (150)
T 3fw2_A 31 FKQKSLLINFWASW--NDSISQKQSNSELREIYKKYKKN----KYIGMLGISLDVDKQQW----KDAIKRDTLDWEQV 98 (150)
T ss_dssp TTTSEEEEEEECTT--CCCHHHHHHHHHHHHHHHHHTTC----SSEEEEEEECCSCHHHH----HHHHHHTTCCSEEE
T ss_pred hCCCEEEEEEEeCC--CCchHHHHHHHHHHHHHHHhccC----CCeEEEEEEcCCCHHHH----HHHHHHhCCCceEE
Confidence 45677888888744 478 988888877777776 32 23443332223333444 77777777765543
No 109
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*
Probab=28.47 E-value=1.6e+02 Score=26.73 Aligned_cols=99 Identities=15% Similarity=0.169 Sum_probs=56.1
Q ss_pred CCcceeccCCCCCHHHHHHHHHHHh------hcccCCCCcceEEEEEeccccccccHHHHHHHHHHHHHHhhhhhcccce
Q 026236 115 ELGNYAEYSGAPNEEEVLQYARVVI------DCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARM 188 (241)
Q Consensus 115 ~pANFlD~GG~a~~~~v~~a~~iil------~~~~~~~~~~~i~inI~GGI~n~T~~d~iA~GIv~A~~~~~~~~~~~~v 188 (241)
.|.=++|+ +.+++.+..+++.+- +. . +..+ ++-|||..- +=| .+.+++.+.... +.
T Consensus 311 ~~~vi~D~--AHNp~a~~all~~l~~~~~~~~~-~--~~~r--~i~V~G~~~---dkd--~~~~~~~l~~~~------~~ 372 (437)
T 3nrs_A 311 QPLLILDV--AHNPHAARYLVNRLAQVINPVNA-S--KQGK--VRAVVGMLS---DKD--IAGTLACLSERV------DE 372 (437)
T ss_dssp TTEEEECC--CCSHHHHHHHHHHHHHTC-----------CC--EEEEECCBT---TBC--HHHHHHHHTTTC------CE
T ss_pred CCeEEEEC--CCCHHHHHHHHHHHHhhcchhhh-c--CCCC--EEEEEeCCC---CCC--HHHHHHHHHhcC------CE
Confidence 36678884 568889998888885 32 1 1222 455677442 223 256766665421 33
Q ss_pred eEEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHhhh
Q 026236 189 HIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIMS 239 (241)
Q Consensus 189 PiVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~~~~~ 239 (241)
=+++...+++.+.+ .++.+...-. ..+ .++++|++.|.+.+++
T Consensus 373 v~~~~~~~~r~~~~----~~l~~~~~~~-~~~---~d~~~Ai~~a~~~a~~ 415 (437)
T 3nrs_A 373 WYCAPLEGPRGASA----GQLAEHLVSA-RQF---SDVETAWRQAMQDADT 415 (437)
T ss_dssp EEECCCSSTTBCCH----HHHHTTCSSC-EEC---SSHHHHHHHHHHHCCT
T ss_pred EEEeCCCCCCCCCH----HHHHHHHhhC-CCc---CCHHHHHHHHHHhcCC
Confidence 35555566665555 3433332211 333 4899999999887653
No 110
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=28.27 E-value=2.3e+02 Score=22.77 Aligned_cols=116 Identities=10% Similarity=-0.002 Sum_probs=64.4
Q ss_pred EEEecCchhHHHHHHHHHhhccCCCCcceecc----------CCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEecccc
Q 026236 91 WTMVAGGGASVIYADTVGDLGYASELGNYAEY----------SGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIA 160 (241)
Q Consensus 91 g~mvnGaGlaMatmD~i~~~~~gg~pANFlD~----------GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~ 160 (241)
|+++.+....-..++.+... |-|-=++|- =+..+.+-.+.+.+.+.+. -+ + + +.-+.| -.
T Consensus 72 giIi~~~~~~~~~~~~l~~~---~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~--G~-~-~--i~~i~~-~~ 141 (292)
T 3k4h_A 72 GIILLYSRENDRIIQYLHEQ---NFPFVLIGKPYDRKDEITYVDNDNYTAAREVAEYLISL--GH-K-Q--IAFIGG-GS 141 (292)
T ss_dssp EEEESCCBTTCHHHHHHHHT---TCCEEEESCCSSCTTTSCEEECCHHHHHHHHHHHHHHT--TC-C-C--EEEEES-CT
T ss_pred EEEEeCCCCChHHHHHHHHC---CCCEEEECCCCCCCCCCCEEEECcHHHHHHHHHHHHHC--CC-c-e--EEEEeC-cc
Confidence 55555544444455555554 234333332 2223455678888888875 22 2 2 222333 22
Q ss_pred ccccHHHHHHHHHHHHHHhhhhhcccceeEEEEecCCChhHHHHHHHHHHHHh-CCCeEEc
Q 026236 161 NFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEEL-GIPLEVY 220 (241)
Q Consensus 161 n~T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g~~~l~~~l~~~-gi~i~~~ 220 (241)
+.....+-.+|+.+++++.+... .+..+.-...+.+.+.+.++++|+.. .+...++
T Consensus 142 ~~~~~~~R~~gf~~~l~~~g~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~ 198 (292)
T 3k4h_A 142 DLLVTRDRLAGMSDALKLADIVL----PKEYILHFDFSRESGQQAVEELMGLQQPPTAIMA 198 (292)
T ss_dssp TBHHHHHHHHHHHHHHHHTTCCC----CGGGEEECCSSHHHHHHHHHHHHTSSSCCSEEEE
T ss_pred cchhHHHHHHHHHHHHHHcCCCC----ChheEEecCCCHHHHHHHHHHHHcCCCCCcEEEE
Confidence 22345566899999999986411 12233346677888988889988775 3343333
No 111
>1pch_A Phosphocarrier protein; phosphotransferase; 1.80A {Mycoplasma capricolum} SCOP: d.94.1.1
Probab=28.24 E-value=66 Score=23.16 Aligned_cols=29 Identities=7% Similarity=0.188 Sum_probs=25.1
Q ss_pred ceeEEEEecCCChhHHHHHHHHHHHHhCC
Q 026236 187 RMHIFVRRGGPNYQTGLAKMRALGEELGI 215 (241)
Q Consensus 187 ~vPiVvRl~Gtn~~~g~~~l~~~l~~~gi 215 (241)
.-.|.|+..|..++++++-|.+++++-|+
T Consensus 57 G~~i~i~a~G~De~~Al~~l~~l~~~~~~ 85 (88)
T 1pch_A 57 GTEITIQADGNDADQAIQAIKQTMIDTAL 85 (88)
T ss_dssp TCEEEEEEESTTHHHHHHHHHHHHHHTTS
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHhCCc
Confidence 35799999999999999999998888764
No 112
>1tig_A IF3-C, translation initiation factor 3; IF3 C-terminal domain, ribosome binding factor; 2.00A {Geobacillus stearothermophilus} SCOP: d.68.1.1
Probab=27.81 E-value=1.1e+02 Score=22.66 Aligned_cols=40 Identities=15% Similarity=0.239 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhhhhhcccceeEEEEecCCC---hhHHHHHHHHHHHHhC
Q 026236 169 FNGIIRALREKESKLKAARMHIFVRRGGPN---YQTGLAKMRALGEELG 214 (241)
Q Consensus 169 A~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn---~~~g~~~l~~~l~~~g 214 (241)
++-+.++|++-. ++.+.||..|-. .+.|.++|.++.++..
T Consensus 25 ~k~a~~FL~~Gd------KVKvti~fRGRE~~h~e~g~~lL~r~~~~l~ 67 (94)
T 1tig_A 25 LRNARKFLEKGD------KVKATIRFKGRAITHKEIGQRVLDRLSEACA 67 (94)
T ss_dssp HHHHHHHHHTTC------EEEEEEECCSCCTTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCC------EEEEEEEECCccccCHHHHHHHHHHHHHHhh
Confidence 566666776543 899999999965 7889888887777643
No 113
>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1
Probab=27.71 E-value=2.6e+02 Score=23.07 Aligned_cols=60 Identities=15% Similarity=0.227 Sum_probs=40.6
Q ss_pred EEEeccccccccHHHHHHHHHHHHHHhhhhhcccceeEEEEe--cCCChhHHHHHHHHHHHHhCCCeEEc
Q 026236 153 LLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRR--GGPNYQTGLAKMRALGEELGIPLEVY 220 (241)
Q Consensus 153 inI~GGI~n~T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl--~Gtn~~~g~~~l~~~l~~~gi~i~~~ 220 (241)
|.+.|-| + +.+++.|+++++...... ...+|++++ .|-....++.+... ++....|+.++
T Consensus 48 i~l~g~I---~--~~~a~~i~~~L~~l~~~~--~~k~I~l~InSPGG~v~ag~~I~~~-i~~~~~pV~t~ 109 (218)
T 1y7o_A 48 IMLTGPV---E--DNMANSVIAQLLFLDAQD--STKDIYLYVNTPGGSVSAGLAIVDT-MNFIKADVQTI 109 (218)
T ss_dssp EEEESCB---C--HHHHHHHHHHHHHHHHHC--TTSCEEEEEEECCBCHHHHHHHHHH-HHHSSSCEEEE
T ss_pred EEEeCEE---C--HHHHHHHHHHHHHHHhcC--CCCCEEEEEECcCCCHHHHHHHHHH-HHhcCCCEEEE
Confidence 4556766 3 567889999988665311 246788888 56678888776654 56677887744
No 114
>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1
Probab=26.23 E-value=1.4e+02 Score=24.90 Aligned_cols=53 Identities=13% Similarity=0.040 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhhcccCCCCcceEEEEEeccccccccHHHHHHHHHHHHHHhhhhhcccceeEEEEecC
Q 026236 128 EEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGG 196 (241)
Q Consensus 128 ~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~n~T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~G 196 (241)
.+.+...+..+-++ + ++.+.+.||--||-+ + -+..|.++++.. +.|+++-..|
T Consensus 53 a~~i~~~L~~l~~~--~-~k~I~l~INSPGGsv--~----a~~~I~~~i~~~-------~~pV~t~v~g 105 (215)
T 2f6i_A 53 ADELISQLLYLDNI--N-HNDIKIYINSPGGSI--N----EGLAILDIFNYI-------KSDIQTISFG 105 (215)
T ss_dssp HHHHHHHHHHHHHH--C-CSCEEEEEEECCBCH--H----HHHHHHHHHHHS-------SSCEEEEEEE
T ss_pred HHHHHHHHHHHHhC--C-CCcEEEEEECCCCCH--H----HHHHHHHHHHhc-------CCCEEEEEee
Confidence 35566666555443 2 366667889999875 3 356677777776 3566665555
No 115
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=25.98 E-value=1.7e+02 Score=21.68 Aligned_cols=57 Identities=18% Similarity=0.163 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHhhhhhcccceeEEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHhh
Q 026236 166 ATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 238 (241)
Q Consensus 166 d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~~~~ 238 (241)
|....-++..++++.+ .++|++|...+. - .+.|++.|+...+. .-.+++.+..+...
T Consensus 82 ~~~n~~~~~~a~~~~~-----~~~iiar~~~~~---~----~~~l~~~G~d~vi~----p~~~~a~~i~~~l~ 138 (140)
T 3fwz_A 82 GYEAGEIVASARAKNP-----DIEIIARAHYDD---E----VAYITERGANQVVM----GEREIARTMLELLE 138 (140)
T ss_dssp HHHHHHHHHHHHHHCS-----SSEEEEEESSHH---H----HHHHHHTTCSEEEE----HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCC-----CCeEEEEECCHH---H----HHHHHHCCCCEEEC----chHHHHHHHHHHhh
Confidence 4444556667777653 689999997653 3 35577789985432 45566666655543
No 116
>3j20_M 30S ribosomal protein S11P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=25.43 E-value=1e+02 Score=24.43 Aligned_cols=46 Identities=22% Similarity=0.174 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhhhhhcccceeEEEEe--------cCCChhHHHHHHHHHHHHhCCCeEEc
Q 026236 167 TTFNGIIRALREKESKLKAARMHIFVRR--------GGPNYQTGLAKMRALGEELGIPLEVY 220 (241)
Q Consensus 167 ~iA~GIv~A~~~~~~~~~~~~vPiVvRl--------~Gtn~~~g~~~l~~~l~~~gi~i~~~ 220 (241)
..|+-+.+.+++++. ..+.|.||= .|+..+.+ -+.|..+|+.|...
T Consensus 62 ~aa~~~~~~a~e~Gi----~~v~V~vkG~gg~~~~~pG~Gresa----iraL~~~Gl~I~~I 115 (137)
T 3j20_M 62 LAARRAAEEALEKGI----VGVHIRVRAPGGSKSKTPGPGAQAA----IRALARAGLKIGRV 115 (137)
T ss_dssp HHHHHHHHHHHHHTE----EEEEEEEECCCSSSCCSCCTHHHHH----HHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHcCC----eEEEEEEECCCCCCCcCCCCcHHHH----HHHHHhCCCEEEEE
Confidence 456777777777764 245555555 34667778 44556679887643
No 117
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A*
Probab=25.37 E-value=2.2e+02 Score=24.25 Aligned_cols=61 Identities=18% Similarity=0.036 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHhhhhhcccceeEEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHhhh
Q 026236 168 TFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIMS 239 (241)
Q Consensus 168 iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~~~~~ 239 (241)
.+.++..+.+..+ +|.+|-+..+-...= ++.++..|-.++.++...+++++.+.|.+++++
T Consensus 72 ~g~a~A~~a~~~G-------~~~~iv~p~~~~~~k----~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~ 132 (303)
T 2v03_A 72 TGIALAMIAALKG-------YRMKLLMPDNMSQER----RAAMRAYGAELILVTKEQGMEGARDLALEMANR 132 (303)
T ss_dssp HHHHHHHHHHHHT-------CEEEEEEETTSCHHH----HHHHHHTTCEEEEECTTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcC-------CcEEEEECCCCCHHH----HHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHh
Confidence 4567777777665 554444444333333 456677888888776444688888888777765
No 118
>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...
Probab=24.75 E-value=3.8e+02 Score=24.01 Aligned_cols=94 Identities=12% Similarity=0.135 Sum_probs=55.0
Q ss_pred ceeccCCCC----CHHHHHHHHHHHhhcccCCCCcceEEEEEec----cccccccHHHHHHHHHHHHHHhhhhh-cccce
Q 026236 118 NYAEYSGAP----NEEEVLQYARVVIDCATADPDGRKRALLIGG----GIANFTDVATTFNGIIRALREKESKL-KAARM 188 (241)
Q Consensus 118 NFlD~GG~a----~~~~v~~a~~iil~~~~~~~~~~~i~inI~G----GI~n~T~~d~iA~GIv~A~~~~~~~~-~~~~v 188 (241)
=...+||+. +.+...++++.+-.. . ..+-||+.- |.....+ .+...-+++++++..... ...++
T Consensus 149 v~vniggn~~t~~~~~dy~~~~~~~~~~----a--d~ielNisCPn~~G~~~l~~-~~~l~~ll~av~~~~~~~~~~~~~ 221 (367)
T 3zwt_A 149 LGVNLGKNKTSVDAAEDYAEGVRVLGPL----A--DYLVVNVSSPNTAGLRSLQG-KAELRRLLTKVLQERDGLRRVHRP 221 (367)
T ss_dssp EEEEECCCTTCSCHHHHHHHHHHHHGGG----C--SEEEEECCCTTSTTGGGGGS-HHHHHHHHHHHHHHHHTSCGGGCC
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHhhh----C--CEEEEECCCCCCCCccccCC-HHHHHHHHHHHHHHHhhccccCCc
Confidence 357788873 467777888887432 2 246778751 1111123 345566777776642111 01379
Q ss_pred eEEEEecCCChhHHHHHHHHHHHHhCCCeE
Q 026236 189 HIFVRRGGPNYQTGLAKMRALGEELGIPLE 218 (241)
Q Consensus 189 PiVvRl~Gtn~~~g~~~l~~~l~~~gi~i~ 218 (241)
||+|++.-.-.++-+.-+-+.+++.|+...
T Consensus 222 Pv~vKi~p~~~~~~~~~ia~~~~~aGadgi 251 (367)
T 3zwt_A 222 AVLVKIAPDLTSQDKEDIASVVKELGIDGL 251 (367)
T ss_dssp EEEEEECSCCCHHHHHHHHHHHHHHTCCEE
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHcCCCEE
Confidence 999999865443344444566788898744
No 119
>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A
Probab=24.36 E-value=1.6e+02 Score=24.33 Aligned_cols=60 Identities=10% Similarity=-0.002 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhhcccCCCCcceEEEEEeccccccccHHHHHHHHHHHHHHhhhhhcccceeEEEEecCCChhHH
Q 026236 128 EEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTG 202 (241)
Q Consensus 128 ~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~n~T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g 202 (241)
++.+...+..+-++ +..+...+.||--||-+ + -+..|.++++.. +.||++-..|.-.-.|
T Consensus 41 a~~i~~~L~~l~~~--~~~~~I~l~InSPGG~v--~----~~~~I~~~i~~~-------~~~V~t~~~G~AaSag 100 (203)
T 3qwd_A 41 ANSIVSQLLFLQAQ--DSEKDIYLYINSPGGSV--T----AGFAIYDTIQHI-------KPDVQTICIGMAASMG 100 (203)
T ss_dssp HHHHHHHHHHHHHH--CSSSCEEEEEEECCBCH--H----HHHHHHHHHHHS-------SSCEEEEEEEEEETHH
T ss_pred HHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCH--H----HHHHHHHHHHHh-------cCCcEEEEeeeehhHH
Confidence 34555555555544 33455567888888874 2 345666777665 4777777777554444
No 120
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=24.34 E-value=2.7e+02 Score=22.08 Aligned_cols=82 Identities=18% Similarity=0.171 Sum_probs=50.1
Q ss_pred CCHHHHHHHHHHHhhcccCCCCcceEEEEEeccccccccHHHHHHHHHHHHHHhhhhhcccceeEEEEecCCChhHHHHH
Q 026236 126 PNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAK 205 (241)
Q Consensus 126 a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~n~T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g~~~ 205 (241)
.+.+..+.+.+.+.+. .. .+ +.-+.| -.+......-.+|+.+++++.+. + +.++.....+.+.+.+.
T Consensus 103 d~~~~~~~a~~~L~~~---G~-~~--i~~i~~-~~~~~~~~~R~~gf~~~l~~~~~-----~-~~~~~~~~~~~~~~~~~ 169 (272)
T 3o74_A 103 DDRDASRQLAASLLSS---AP-RS--IALIGA-RPELSVSQARAGGFDEALQGYTG-----E-VRRYQGEAFSRECGQRL 169 (272)
T ss_dssp CHHHHHHHHHHHHHTT---CC-SE--EEEEEE-CTTSHHHHHHHHHHHHHTTTCCS-----E-EEEEEESSSSHHHHHHH
T ss_pred chHHHHHHHHHHHHHC---CC-cE--EEEEec-CCCCccHHHHHHHHHHHHHHcCC-----C-hheeecCCCCHHHHHHH
Confidence 3455677888888774 22 22 222333 22224555667888888887652 2 23444556788899899
Q ss_pred HHHHHHHhC--CCeEEc
Q 026236 206 MRALGEELG--IPLEVY 220 (241)
Q Consensus 206 l~~~l~~~g--i~i~~~ 220 (241)
++++|+... +...++
T Consensus 170 ~~~~l~~~~~~~~ai~~ 186 (272)
T 3o74_A 170 MQQLIDDLGGLPDALVT 186 (272)
T ss_dssp HHHHHHHHTSCCSEEEE
T ss_pred HHHHHhcCCCCCcEEEE
Confidence 999998875 554443
No 121
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A*
Probab=24.29 E-value=2.4e+02 Score=23.98 Aligned_cols=61 Identities=13% Similarity=0.131 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhhhhhcccceeEEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHhhh
Q 026236 168 TFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIMS 239 (241)
Q Consensus 168 iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~~~~~ 239 (241)
.+.++..+.+..+ +|.+|-+..+-...= ++.++..|-.++.++...+++++.+.+.+++++
T Consensus 73 ~g~a~A~~a~~~G-------~~~~i~~p~~~~~~k----~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~l~~~ 133 (304)
T 1ve1_A 73 TGIGLAMIAASRG-------YRLILTMPAQMSEER----KRVLKAFGAELVLTDPERRMLAAREEALRLKEE 133 (304)
T ss_dssp HHHHHHHHHHHHT-------CEEEEEEETTCCHHH----HHHHHHTTCEEEEECTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-------CcEEEEeCCCCCHHH----HHHHHHcCCEEEEECCCCCHHHHHHHHHHHHhc
Confidence 5667777777665 554444444333333 455677788888776433388888877777653
No 122
>4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440}
Probab=24.14 E-value=1.5e+02 Score=26.70 Aligned_cols=45 Identities=16% Similarity=-0.076 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhhhhhcccceeEEEEecCCC----------hhHHHHHHHHHHHHhCCCeE
Q 026236 168 TFNGIIRALREKESKLKAARMHIFVRRGGPN----------YQTGLAKMRALGEELGIPLE 218 (241)
Q Consensus 168 iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn----------~~~g~~~l~~~l~~~gi~i~ 218 (241)
.+.-|++|+++.-. .+ ||.||+.+.. .++..++. +.|++.|+.+.
T Consensus 205 f~~eiv~aVr~~vg----~~-~v~vRls~~~~~~g~~~~~~~~~~~~la-~~l~~~Gvd~i 259 (362)
T 4ab4_A 205 LLLEVTDAAIEVWG----AQ-RVGVHLAPRADAHDMGDADRAETFTYVA-RELGKRGIAFI 259 (362)
T ss_dssp HHHHHHHHHHHHHC----GG-GEEEEECTTCCSSSCCCTTHHHHHHHHH-HHHHHTTCSEE
T ss_pred HHHHHHHHHHHhcC----CC-ceEEEeeccccccccCCCCcHHHHHHHH-HHHHHhCCCEE
Confidence 55668888887642 24 9999999763 23454444 44678888754
No 123
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=23.91 E-value=2.1e+02 Score=20.84 Aligned_cols=70 Identities=19% Similarity=0.089 Sum_probs=40.5
Q ss_pred EEEEEeccccccccHHHHHHHHHHHHH-HhhhhhcccceeEEEEecCCChhHHHHHHHHHHHHhCCC-----eEEcCCCC
Q 026236 151 RALLIGGGIANFTDVATTFNGIIRALR-EKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIP-----LEVYGPEA 224 (241)
Q Consensus 151 i~inI~GGI~n~T~~d~iA~GIv~A~~-~~~~~~~~~~vPiVvRl~Gtn~~~g~~~l~~~l~~~gi~-----i~~~~~~~ 224 (241)
++++. .++ +.+|..+-+....+. +.. +.-+-+.+.|.+..- +++|+.+|+. ..+|.
T Consensus 52 vvlDl-s~v---~~iDssgl~~L~~~~~~~~------~~g~~l~l~~~~~~v-----~~~l~~~gl~~~~~~~~i~~--- 113 (130)
T 4dgh_A 52 LILRL-KWV---PFMDITGIQTLEEMIQSFH------KRGIKVLISGANSRV-----SQKLVKAGIVKLVGEQNVYP--- 113 (130)
T ss_dssp EEEEC-TTC---CCCCHHHHHHHHHHHHHHH------TTTCEEEEECCCHHH-----HHHHHHTTHHHHHCGGGEES---
T ss_pred EEEEC-CCC---CcccHHHHHHHHHHHHHHH------HCCCEEEEEcCCHHH-----HHHHHHcCChhhcCcccccC---
Confidence 45554 555 577776655544443 333 233455677877443 4666666652 12444
Q ss_pred CHHHHHHHHHHHhh
Q 026236 225 TMTGICKQAIDCIM 238 (241)
Q Consensus 225 ~m~eav~~av~~~~ 238 (241)
++++|+..+-+..+
T Consensus 114 s~~~Al~~~~~~~~ 127 (130)
T 4dgh_A 114 VFEGALSAALTEIE 127 (130)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhc
Confidence 89999988876543
No 124
>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K*
Probab=23.18 E-value=1.3e+02 Score=24.26 Aligned_cols=45 Identities=18% Similarity=0.237 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhhhhhcccceeEEEEec--------CCChhHHHHHHHHHHHHhCCCeEEc
Q 026236 168 TFNGIIRALREKESKLKAARMHIFVRRG--------GPNYQTGLAKMRALGEELGIPLEVY 220 (241)
Q Consensus 168 iA~GIv~A~~~~~~~~~~~~vPiVvRl~--------Gtn~~~g~~~l~~~l~~~gi~i~~~ 220 (241)
.|+-+.+.+++++. ..+-|.||=. |+..+.+ -+.|..+|+.|...
T Consensus 77 aa~~~a~~a~e~Gi----~~v~V~vkG~gg~~~kgpG~Gresa----iraL~~~GlkI~~I 129 (151)
T 2xzm_K 77 AAIDVVNRCKELKI----NALHIKLRAKGGVETKQPGPGAQSA----LRALARSGMKIGRI 129 (151)
T ss_dssp HHHHHHHHHHHHTC----CEEEEEEECCCTTSCCSCCSHHHHH----HHHHHHTSCEEEEE
T ss_pred HHHHHHHHHHHcCC----eEEEEEEEcCCCCCccCCCccHHHH----HHHHHHCCCEEEEE
Confidence 35556666666664 2455555533 6677888 55566779877643
No 125
>1o60_A 2-dehydro-3-deoxyphosphooctonate aldolase; structural genomics, transferase; 1.80A {Haemophilus influenzae} SCOP: c.1.10.4 PDB: 3e9a_A
Probab=23.10 E-value=1.8e+02 Score=25.46 Aligned_cols=49 Identities=18% Similarity=0.316 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhhhhhcccceeEEEE-------------ecCCChhHHHHHHHHHHHHhCCCeE
Q 026236 167 TTFNGIIRALREKESKLKAARMHIFVR-------------RGGPNYQTGLAKMRALGEELGIPLE 218 (241)
Q Consensus 167 ~iA~GIv~A~~~~~~~~~~~~vPiVvR-------------l~Gtn~~~g~~~l~~~l~~~gi~i~ 218 (241)
+.|.-+++++++.+... .++.+.| .+|...++|++.|+++.++.|+|+.
T Consensus 32 e~a~~~a~~lk~~ga~~---~~~~v~k~~f~k~prts~~sf~g~~l~~gl~~l~~~~~~~Glp~~ 93 (292)
T 1o60_A 32 DMAMQVCEAYVKVTEKL---GVPYVFKASFDKANRSSIHSYRGPGMEEGLKIFQELKDTFGVKII 93 (292)
T ss_dssp HHHHHHHHHHHHHHHHH---TCCEEEEEESCCTTCSSTTSCCCSCHHHHHHHHHHHHHHHCCEEE
T ss_pred HHHHHHHHHHHHHhhhh---CEeEEEhhhcccCCCCChHHhhhhhHHHHHHHHHHHHHHcCCcEE
Confidence 34555666666654322 2555555 1233358999999999999999975
No 126
>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1
Probab=22.70 E-value=1.8e+02 Score=23.96 Aligned_cols=59 Identities=12% Similarity=0.003 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhhcccCCCCcceEEEEEeccccccccHHHHHHHHHHHHHHhhhhhcccceeEEEEecCCChhHH
Q 026236 129 EEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTG 202 (241)
Q Consensus 129 ~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~n~T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g 202 (241)
+.+...+..+-++ +..+...+.||--||-+ + -+..|.++++.. +.|+++-..|--.-.|
T Consensus 45 ~~i~~~L~~l~~~--~~~~~I~l~INSpGG~v--~----~~~~I~~~i~~~-------~~~v~t~~~G~AaS~g 103 (201)
T 3p2l_A 45 NLVIAQLLFLESE--DPDKDIYFYINSPGGMV--T----AGMGVYDTMQFI-------KPDVSTICIGLAASMG 103 (201)
T ss_dssp HHHHHHHHHHHHH--CSSSCEEEEEEECCBCH--H----HHHHHHHHHHHS-------SSCEEEEEEEEEETHH
T ss_pred HHHHHHHHHHHhc--CCCCCEEEEEECCCCCH--H----HHHHHHHHHHHh-------CCCeEEEEcCEehhHH
Confidence 4455555554443 23445557778888864 2 345566666654 4566666666443333
No 127
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=22.66 E-value=49 Score=27.40 Aligned_cols=68 Identities=12% Similarity=0.032 Sum_probs=0.0
Q ss_pred HHHHHHHhhccCCCCcceeccCC---CCCHHHHH--HHHHHHhhcccCCCCcceEEEEEeccccccccHHHHHHHHHHHH
Q 026236 102 IYADTVGDLGYASELGNYAEYSG---APNEEEVL--QYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRAL 176 (241)
Q Consensus 102 atmD~i~~~~~gg~pANFlD~GG---~a~~~~v~--~a~~iil~~~~~~~~~~~i~inI~GGI~n~T~~d~iA~GIv~A~ 176 (241)
.+.+.+..+ |-.+-.-+-+-+ ..+.+.-+ ++++-+++ .+++..+|+ ...|.+|.|+++|+
T Consensus 152 Gf~~al~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~ai~----------~~~d~~A~g~~~al 216 (301)
T 3miz_A 152 AFRRTTSEF--GLTENDLSISLGMDGPVGAENNYVFAAATEMLK---QDDRPTAIM----------SGNDEMAIQIYIAA 216 (301)
T ss_dssp HHHHHHHHH--TCCGGGEEEEECEESSTTSCEECHHHHHHHHHT---STTCCSEEE----------ESSHHHHHHHHHHH
T ss_pred HHHHHHHHc--CCCCCcceEEEcCCCCcCccccHHHHHHHHHHc---CCCCCcEEE----------ECCHHHHHHHHHHH
Q ss_pred HHhhhhhccccee
Q 026236 177 REKESKLKAARMH 189 (241)
Q Consensus 177 ~~~~~~~~~~~vP 189 (241)
++.+. ++|
T Consensus 217 ~~~g~-----~vP 224 (301)
T 3miz_A 217 MALGL-----RIP 224 (301)
T ss_dssp HTTTC-----CHH
T ss_pred HHcCC-----CCC
No 128
>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.60A {Wolinella succinogenes} PDB: 3oir_A*
Probab=22.52 E-value=2.4e+02 Score=20.84 Aligned_cols=72 Identities=13% Similarity=0.053 Sum_probs=42.3
Q ss_pred EEEEEeccccccccHHHHHHHHHHHH-HHhhhhhcccceeEEEEecCCChhHHHHHHHHHHHHhCCC--e---EEcCCCC
Q 026236 151 RALLIGGGIANFTDVATTFNGIIRAL-REKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIP--L---EVYGPEA 224 (241)
Q Consensus 151 i~inI~GGI~n~T~~d~iA~GIv~A~-~~~~~~~~~~~vPiVvRl~Gtn~~~g~~~l~~~l~~~gi~--i---~~~~~~~ 224 (241)
++++. .++ +.+|..+-+....+ ++.. +.-+-+++.|.+..- +++|+.+|+. + .+| .
T Consensus 55 vvlDl-s~v---~~iDssgl~~L~~~~~~~~------~~g~~l~l~~~~~~v-----~~~l~~~gl~~~~~~~~i~---~ 116 (135)
T 4dgf_A 55 FILRM-RRV---PVIDATGMHALWEFQESCE------KRGTILLLSGVSDRL-----YGALNRFGFIEALGEERVF---D 116 (135)
T ss_dssp EEEEC-TTC---SCBCHHHHHHHHHHHHHHH------HHTCEEEEESCCHHH-----HHHHHHHTHHHHHCGGGBC---S
T ss_pred EEEEc-CCC---CccCHHHHHHHHHHHHHHH------HCCCEEEEEcCCHHH-----HHHHHHcCChhhcCcccee---C
Confidence 45554 555 56777655544444 3433 222456677887433 4666666652 1 244 4
Q ss_pred CHHHHHHHHHHHhhhc
Q 026236 225 TMTGICKQAIDCIMSA 240 (241)
Q Consensus 225 ~m~eav~~av~~~~~~ 240 (241)
++++|+..+-+...+|
T Consensus 117 t~~~Al~~~~~~~~~~ 132 (135)
T 4dgf_A 117 HIDKALAYAKLLVETA 132 (135)
T ss_dssp SHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHhhh
Confidence 8999999988877765
No 129
>2hzg_A Mandelate racemase/muconate lactonizing enzyme/EN superfamily; structural genomics, predicted mandelate racemase, PSI; 2.02A {Rhodobacter sphaeroides}
Probab=22.51 E-value=3.9e+02 Score=23.72 Aligned_cols=105 Identities=18% Similarity=0.128 Sum_probs=61.0
Q ss_pred chhHHHHHHHHHhhc-------cCCCC----cceeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEE---Eecccccc
Q 026236 97 GGASVIYADTVGDLG-------YASEL----GNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALL---IGGGIANF 162 (241)
Q Consensus 97 aGlaMatmD~i~~~~-------~gg~p----ANFlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~in---I~GGI~n~ 162 (241)
+|+.||..|+..... .||.. --|.-+++..+.+.+.+..+-.... ..+. +=++ + |+ ++
T Consensus 104 ~aid~AlwDl~~k~~g~Pl~~llGg~~~~~vp~~~~~~~~~~~~~~~~~a~~~~~~---Gf~~--iKik~spv-G~--~~ 175 (401)
T 2hzg_A 104 SGIEMALWDLLGRRLSAPAWALLGYSASHGKRPYASLLFGDTPQETLERARAARRD---GFAA--VKFGWGPI-GR--GT 175 (401)
T ss_dssp HHHHHHHHHHHHHHHTCBHHHHTTCSCCCCBEEEEEEECCSSHHHHHHHHHHHHHT---TCSE--EEEESTTT-TS--SC
T ss_pred HHHHHHHHHHHHHHhCCcHHHHcCCCCCCceEeeEEcCCCCCHHHHHHHHHHHHHh---CCCe--EEEcCCCC-CC--CH
Confidence 678899999865432 15532 1232334445777777666665543 2232 1134 3 43 11
Q ss_pred ccHHHHHHHHHHHHHHhhhhhcccceeEEEEecCC---ChhHHHHHHHHHHHHhCCCe
Q 026236 163 TDVATTFNGIIRALREKESKLKAARMHIFVRRGGP---NYQTGLAKMRALGEELGIPL 217 (241)
Q Consensus 163 T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gt---n~~~g~~~l~~~l~~~gi~i 217 (241)
.....-+++++++.-. .++|+.|...|. +.+++.+.+++ |++.|+..
T Consensus 176 ---~~~~~e~v~avr~a~G----~d~~l~vDan~~~~~~~~~a~~~~~~-l~~~~i~~ 225 (401)
T 2hzg_A 176 ---VAADADQIMAAREGLG----PDGDLMVDVGQIFGEDVEAAAARLPT-LDAAGVLW 225 (401)
T ss_dssp ---HHHHHHHHHHHHHHHC----SSSEEEEECTTTTTTCHHHHHTTHHH-HHHTTCSE
T ss_pred ---HHHHHHHHHHHHHHhC----CCCeEEEECCCCCCCCHHHHHHHHHH-HHhcCCCE
Confidence 1223457777776431 378988888765 47888888776 68888753
No 130
>1ejb_A Lumazine synthase; analysis, inhibitor complex, vitamin biosynthesis transferase; HET: INJ; 1.85A {Saccharomyces cerevisiae} SCOP: c.16.1.1 PDB: 2jfb_A
Probab=22.30 E-value=1.1e+02 Score=24.92 Aligned_cols=129 Identities=16% Similarity=0.055 Sum_probs=72.6
Q ss_pred ccEEEEecC------chhHHHHHHHHHhhccCCCCccee--ccCCCCCHHHHHHHHHHHhh-cc--cCCCCcceEEE--E
Q 026236 88 GRIWTMVAG------GGASVIYADTVGDLGYASELGNYA--EYSGAPNEEEVLQYARVVID-CA--TADPDGRKRAL--L 154 (241)
Q Consensus 88 G~Ig~mvnG------aGlaMatmD~i~~~~~gg~pANFl--D~GG~a~~~~v~~a~~iil~-~~--~~~~~~~~i~i--n 154 (241)
-+||+++.= -.|-=...|.+..+ |.++.|.- .+=|.-. +--+.+.+.. +- ..+.++. |.+ -
T Consensus 17 ~ri~IV~arfn~~I~~~Ll~gA~~~L~~~--Gv~~~~i~v~~VPGafE---iP~aak~la~~~~~~~~~yDav-IaLG~V 90 (168)
T 1ejb_A 17 IRVGIIHARWNRVIIDALVKGAIERMASL--GVEENNIIIETVPGSYE---LPWGTKRFVDRQAKLGKPLDVV-IPIGVL 90 (168)
T ss_dssp CCEEEEECCTTHHHHHHHHHHHHHHHHHT--TCCGGGEEEEECSSGGG---HHHHHHHHHHHHHHTTCCCSEE-EEEEEE
T ss_pred CEEEEEEEeCcHHHHHHHHHHHHHHHHHc--CCCccceEEEECCcHHH---HHHHHHHHHhhccccCCCcCEE-EEeccc
Confidence 356666532 13444567999999 77777755 6777443 3333333332 00 0223442 222 2
Q ss_pred EeccccccccHHHHHHHHHHHHHHhhhhhccccee-EEEEecCCChhHHHHHHHHHHHHhCCCeE-EcCCCCCHHHHHHH
Q 026236 155 IGGGIANFTDVATTFNGIIRALREKESKLKAARMH-IFVRRGGPNYQTGLAKMRALGEELGIPLE-VYGPEATMTGICKQ 232 (241)
Q Consensus 155 I~GGI~n~T~~d~iA~GIv~A~~~~~~~~~~~~vP-iVvRl~Gtn~~~g~~~l~~~l~~~gi~i~-~~~~~~~m~eav~~ 232 (241)
|=|+. ..-|.|++.+.+.+-+.... ..+| +..-|...|+|++ ++..|..-- . ..+.=.|++..
T Consensus 91 IrG~T---~Hfd~Va~~vs~Gl~~vsL~---~~vPV~~GVLT~~~~eQA-------~~Rag~~~~~~--~~nkG~eaA~a 155 (168)
T 1ejb_A 91 IKGST---MHFEYISDSTTHALMNLQEK---VDMPVIFGLLTCMTEEQA-------LARAGIDEAHS--MHNHGEDWGAA 155 (168)
T ss_dssp ECCSS---SHHHHHHHHHHHHHHHHHHH---HTSCBCCEEEEESSHHHH-------HHHBTCSTTCC--SCBHHHHHHHH
T ss_pred ccCCc---hHHHHHHHHHHHHHHHHHhh---cCCCEEEEEecCCCHHHH-------HHhcCcccccc--ccchHHHHHHH
Confidence 33666 46677777777777776542 3689 4455788889999 344554210 0 11345778888
Q ss_pred HHHHh
Q 026236 233 AIDCI 237 (241)
Q Consensus 233 av~~~ 237 (241)
|++++
T Consensus 156 Alem~ 160 (168)
T 1ejb_A 156 AVEMA 160 (168)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88775
No 131
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=22.26 E-value=3.2e+02 Score=22.19 Aligned_cols=121 Identities=12% Similarity=0.112 Sum_probs=66.0
Q ss_pred CccEEEEecCchhHH------HHHHHHHhhccCC-CCcceeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEeccc
Q 026236 87 KGRIWTMVAGGGASV------IYADTVGDLGYAS-ELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGI 159 (241)
Q Consensus 87 dG~Ig~mvnGaGlaM------atmD~i~~~~~gg-~pANFlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI 159 (241)
.++|+++..-.+..- .+.+.+..+ .| ++-. ..-|..+.+.-+++++-+++. .+++.+ ||
T Consensus 133 ~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~--~g~~~~~--~~~~~~~~~~~~~~~~~ll~~-~~~~~a--i~------- 198 (288)
T 1gud_A 133 GGEVAIIEGKAGNASGEARRNGATEAFKKA--SQIKLVA--SQPADWDRIKALDVATNVLQR-NPNIKA--IY------- 198 (288)
T ss_dssp CEEEEEEECSTTCHHHHHHHHHHHHHHHTC--TTEEEEE--EEECTTCHHHHHHHHHHHHHH-CTTCCE--EE-------
T ss_pred CCEEEEEeCCCCCchHhHHHHHHHHHHHhC--CCcEEEE--eecCCccHHHHHHHHHHHHHh-CCCceE--EE-------
Confidence 468998864333322 234666654 22 2211 123556778888888877764 133433 33
Q ss_pred cccccHHHHHHHHHHHHHHhhhhhcccceeEEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHh
Q 026236 160 ANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 237 (241)
Q Consensus 160 ~n~T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~~~ 237 (241)
.-.|.+|-|+++|+++.+.. .++. ||-..+ ...+ ...+..-.+-..+- .+..+..+.|++++
T Consensus 199 ---~~nD~~A~g~~~al~~~G~~---~dv~-vvGfD~--~~~~----~~~~~~p~~lttv~---q~~~~~g~~a~~~l 260 (288)
T 1gud_A 199 ---CANDTMAMGVAQAVANAGKT---GKVL-VVGTDG--IPEA----RKMVEAGQMTATVA---QNPADIGATGLKLM 260 (288)
T ss_dssp ---ESSHHHHHHHHHHHHHTTCT---TTSE-EEEESC--CHHH----HHHHHHTSSCEEEE---CCHHHHHHHHHHHH
T ss_pred ---ECCCchHHHHHHHHHhcCCC---CCeE-EEEeCC--CHHH----HHHHHcCccEEEEE---cCHHHHHHHHHHHH
Confidence 24588999999999998742 2454 444443 3344 22222212111222 37777777777654
No 132
>2c92_A 6,7-dimethyl-8-ribityllumazine synthase; transferase, riboflavin biosynthesis, inhibitor binding; HET: TP6; 1.6A {Mycobacterium tuberculosis} PDB: 1w29_A* 1w19_A* 2c94_A* 2c97_A* 2c9b_A* 2c9d_A* 2vi5_A*
Probab=22.22 E-value=1.5e+02 Score=23.90 Aligned_cols=125 Identities=12% Similarity=0.055 Sum_probs=68.7
Q ss_pred ccEEEEecC------chhHHHHHHHHHhhccCCCCcceeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEE--EEeccc
Q 026236 88 GRIWTMVAG------GGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRAL--LIGGGI 159 (241)
Q Consensus 88 G~Ig~mvnG------aGlaMatmD~i~~~~~gg~pANFlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~i--nI~GGI 159 (241)
-+||+++.= -.|-=...|.+..+ |.+--.-.++=|.-. +--+.+.+... .++. |.+ -|=|+.
T Consensus 18 ~ri~IV~arfn~~I~~~Ll~gA~~~l~~~--G~~~i~v~~VPGafE---iP~aak~la~~----yDav-IaLG~VIrG~T 87 (160)
T 2c92_A 18 VRLAIVASSWHGKICDALLDGARKVAAGC--GLDDPTVVRVLGAIE---IPVVAQELARN----HDAV-VALGVVIRGQT 87 (160)
T ss_dssp CCEEEEEECSSHHHHHHHHHHHHHHHHHT--TCSCCEEEEESSGGG---HHHHHHHHHTS----CSEE-EEEEEEECCSS
T ss_pred CEEEEEEEeCcHHHHHHHHHHHHHHHHHc--CCCceEEEECCcHHH---HHHHHHHHHhc----CCEE-EEEeeeecCCc
Confidence 456766532 13344457888888 654333445656432 22233444332 4442 222 233777
Q ss_pred cccccHHHHHHHHHHHHHHhhhhhcccceeEEEE-ecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHhh
Q 026236 160 ANFTDVATTFNGIIRALREKESKLKAARMHIFVR-RGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 238 (241)
Q Consensus 160 ~n~T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvR-l~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~~~~ 238 (241)
..-|.+++.+.+.+-+.... .++||..- |.-.|++++ ++..|.+-. ..+.=.||+..|++++.
T Consensus 88 ---~Hfd~Va~~vs~Gl~~v~L~---~~vPV~~GVLT~~~~eQA-------~~Rag~~~~---~~nKG~eaA~aalem~~ 151 (160)
T 2c92_A 88 ---PHFDYVCDAVTQGLTRVSLD---SSTPIANGVLTTNTEEQA-------LDRAGLPTS---AEDKGAQATVAALATAL 151 (160)
T ss_dssp ---THHHHHHHHHHHHHHHHHHH---HTCCEEEEEEEESSHHHH-------HTTBTCTTC---SCBHHHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHHHHHHhh---cCCCEEEEEcCCCCHHHH-------HHHhccccc---cchhHHHHHHHHHHHHH
Confidence 46777777777777776542 36996655 444568888 344554211 11345677777777654
No 133
>1c2y_A Protein (lumazine synthase); riboflavin biosynthesis, transferase; HET: LMZ; 3.30A {Spinacia oleracea} SCOP: c.16.1.1
Probab=22.22 E-value=1.7e+02 Score=23.52 Aligned_cols=125 Identities=12% Similarity=-0.032 Sum_probs=67.4
Q ss_pred ccEEEEecC------chhHHHHHHHHHhhccCCC-CcceeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEE--EEecc
Q 026236 88 GRIWTMVAG------GGASVIYADTVGDLGYASE-LGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRAL--LIGGG 158 (241)
Q Consensus 88 G~Ig~mvnG------aGlaMatmD~i~~~~~gg~-pANFlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~i--nI~GG 158 (241)
-+||+++.= -.|-=...|.+..+ |-+ --...++=| +-.+--+.+.+.+. .+.++. |.+ -|=|+
T Consensus 14 ~ri~IV~arfn~~I~~~Ll~ga~~~l~~~--Gv~~~i~v~~VPG---afEiP~aa~~la~~--~~yDav-IaLG~VIrG~ 85 (156)
T 1c2y_A 14 FRFAIVVARFNEFVTRRLMEGALDTFKKY--SVNEDIDVVWVPG---AYELGVTAQALGKS--GKYHAI-VCLGAVVKGD 85 (156)
T ss_dssp CCEEEEEESTTHHHHHHHHHHHHHHHHHT--TCCSCCEEEEESS---HHHHHHHHHHHHHT--TCCSEE-EEEEECCCCS
T ss_pred CEEEEEEEeCcHHHHHHHHHHHHHHHHHc--CCCCceEEEECCc---HHHHHHHHHHHHhc--CCCCEE-EEecccccCC
Confidence 456666432 12333457888888 554 122344544 33444455555443 234442 222 12266
Q ss_pred ccccccHHHHHHHHHHHHHHhhhhhcccceeEEE-EecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHh
Q 026236 159 IANFTDVATTFNGIIRALREKESKLKAARMHIFV-RRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 237 (241)
Q Consensus 159 I~n~T~~d~iA~GIv~A~~~~~~~~~~~~vPiVv-Rl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~~~ 237 (241)
. ..-|.+++.+.+.+-+.... .++||.. -|.-.|.+++ ++..|.... +.=.||+..|++++
T Consensus 86 T---~Hfd~Va~~v~~gl~~v~L~---~~vPV~~GVLT~~~~eQA-------~~Rag~~~~-----nKG~eaA~aAlem~ 147 (156)
T 1c2y_A 86 T---SHYDAVVNSASSGVLSAGLN---SGVPCVFGVLTCDNMDQA-------INRAGGKAG-----NKGAESALTAIEMA 147 (156)
T ss_dssp S---THHHHHHHHHHHHHHHHHHH---HTSCEEEEEECCSSHHHH-------HHHEEETTE-----EHHHHHHHHHHHHH
T ss_pred c---hHHHHHHHHHHHHHHHHHhh---cCCCEEEEEeCCCCHHHH-------HHHcCCccc-----chHHHHHHHHHHHH
Confidence 6 46777888888877776542 3699554 4555567777 334442211 23466777777765
Q ss_pred h
Q 026236 238 M 238 (241)
Q Consensus 238 ~ 238 (241)
.
T Consensus 148 ~ 148 (156)
T 1c2y_A 148 S 148 (156)
T ss_dssp H
T ss_pred H
Confidence 3
No 134
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=22.19 E-value=2.4e+02 Score=20.73 Aligned_cols=62 Identities=11% Similarity=0.200 Sum_probs=35.6
Q ss_pred HHHHHHHHHhhhhhcccceeEEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHhhhc
Q 026236 170 NGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIMSA 240 (241)
Q Consensus 170 ~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~~~~~~ 240 (241)
+.|++.+++. .+|+||=..|.....-.+.-.+. ++-|+.+.|.. .++-+|..++.-+..|.|
T Consensus 41 rdiiksmkdn-------gkplvvfvngasqndvnefqnea-kkegvsydvlk-stdpeeltqrvreflkta 102 (112)
T 2lnd_A 41 RDIIKSMKDN-------GKPLVVFVNGASQNDVNEFQNEA-KKEGVSYDVLK-STDPEELTQRVREFLKTA 102 (112)
T ss_dssp HHHHHHHTTC-------CSCEEEEECSCCHHHHHHHHHHH-HHHTCEEEEEE-CCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhc-------CCeEEEEecCcccccHHHHHHHH-HhcCcchhhhc-cCCHHHHHHHHHHHHHhc
Confidence 4455555554 47888888887665553333332 33477665553 456677666666655543
No 135
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=21.80 E-value=2.5e+02 Score=22.87 Aligned_cols=108 Identities=10% Similarity=0.015 Sum_probs=61.3
Q ss_pred EEEecCchhHHHHHHHHHhhccCCCCcceeccC---------CCCCHHHHHHHHHHHhhcccCCCCcceEEEEEeccccc
Q 026236 91 WTMVAGGGASVIYADTVGDLGYASELGNYAEYS---------GAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIAN 161 (241)
Q Consensus 91 g~mvnGaGlaMatmD~i~~~~~gg~pANFlD~G---------G~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~n 161 (241)
|+++.+....-..++.+... |-|.=++|-. +..+.+-.+.+.+.+++. -+.+ +.-+.| -.+
T Consensus 68 GiIi~~~~~~~~~~~~l~~~---~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~--G~~~----I~~i~~-~~~ 137 (294)
T 3qk7_A 68 ALIVAHTQPEDFRLQYLQKQ---NFPFLALGRSHLPKPYAWFDFDNHAGASLAVKRLLEL--GHQR----IAFVST-DAR 137 (294)
T ss_dssp EEEECSCCSSCHHHHHHHHT---TCCEEEESCCCCSSCCEEEEECHHHHHHHHHHHHHHT--TCCC----EEEEEE-SSC
T ss_pred EEEEeCCCCChHHHHHHHhC---CCCEEEECCCCCCCCCCEEEcChHHHHHHHHHHHHHC--CCce----EEEEeC-Ccc
Confidence 45555443333444555443 2344333331 233456688888888875 2222 222333 222
Q ss_pred cccHHHHHHHHHHHHHHhhhhhcccce-eEEEEecCCChhHHHHHHHHHHHHh
Q 026236 162 FTDVATTFNGIIRALREKESKLKAARM-HIFVRRGGPNYQTGLAKMRALGEEL 213 (241)
Q Consensus 162 ~T~~d~iA~GIv~A~~~~~~~~~~~~v-PiVvRl~Gtn~~~g~~~l~~~l~~~ 213 (241)
.....+-.+|..+++++.+. +. +..+.-...+.+.|.+.++++|+..
T Consensus 138 ~~~~~~R~~Gf~~al~~~g~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 185 (294)
T 3qk7_A 138 ISYVDQRLQGYVQTMSEAGL-----MPLAGYLQKADPTRPGGYLAASRLLALE 185 (294)
T ss_dssp CHHHHHHHHHHHHHHHTTTC-----CCCTTCEEEECSSHHHHHHHHHHHHHSS
T ss_pred cchHHHHHHHHHHHHHHCCC-----CCChhHeecCCCCHHHHHHHHHHHHcCC
Confidence 23455668999999998763 22 2334456677888988889998864
No 136
>3dez_A OPRT, oprtase, orotate phosphoribosyltransferase; glycosyltransferase, MAGN pyrimidine biosynthesis; 2.40A {Streptococcus mutans}
Probab=21.70 E-value=2.7e+02 Score=23.56 Aligned_cols=55 Identities=11% Similarity=0.020 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhhhhhcccceeEEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHH
Q 026236 169 FNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAID 235 (241)
Q Consensus 169 A~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~ 235 (241)
....++++++.+. ..+-+++=+ .-..+.| ++.+++.|++++.. .++++....+.+
T Consensus 165 l~~a~~~L~~~Ga----~vv~v~~l~-d~~~~~a----~e~l~~~gi~~~sL---~~~~dl~~~~~~ 219 (243)
T 3dez_A 165 VLDAVAAAQREGA----DVLGVVAIF-TYELPKA----TANFEKASVKLVTL---SNYSELIKVAKV 219 (243)
T ss_dssp HHHHHHHHHHTTC----EEEEEEEEE-ECCCHHH----HHHHHHHTCCEEES---SCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCC----EEEEEEEEE-ECCCchH----HHHHHhcCCCEEEE---eeHHHHHHHHHH
Confidence 3567788888764 122222212 2223567 78888899998854 489998888765
No 137
>3m3h_A OPRT, oprtase, orotate phosphoribosyltransferase; pyrimidine ribonucleotide biosynthesis, structural genomics, infectious diseases; 1.75A {Bacillus anthracis} PDB: 3osc_A*
Probab=21.69 E-value=2.8e+02 Score=23.33 Aligned_cols=55 Identities=15% Similarity=0.083 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhhhhhcccceeEEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHH
Q 026236 169 FNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAID 235 (241)
Q Consensus 169 A~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~ 235 (241)
....++++++.+. ++--++-+-.-..+.| ++.+++.|+|++.. .++++....+.+
T Consensus 153 l~~a~~~L~~~Ga-----~vv~v~~l~~~~~~~~----~e~l~~~gi~v~sL---~~~~dl~~~~~~ 207 (234)
T 3m3h_A 153 AITCVEALREAGC-----EVLGIVSIFTYELEAG----KEKLEAANVASYSL---SDYSALTEVAAE 207 (234)
T ss_dssp HHHHHHHHHHTTC-----EEEEEEEEEECCCHHH----HHHHHHTTCCEEES---SCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCC-----EEEEEEEEEECcCchH----HHHHHhcCCCEEEE---eeHHHHHHHHHH
Confidence 3567788888764 2221222222233567 78888899999844 488888887765
No 138
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=21.65 E-value=2.2e+02 Score=24.35 Aligned_cols=61 Identities=13% Similarity=0.019 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhhhhhcccceeEEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHhhh
Q 026236 168 TFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIMS 239 (241)
Q Consensus 168 iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~~~~~ 239 (241)
.+.++..+.+..+ +|.+|-+..+-..+= ++.++..|-.++.++...+++++.+.|.+++++
T Consensus 78 ~g~alA~~a~~~G-------~~~~iv~p~~~~~~k----~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~l~~~ 138 (313)
T 2q3b_A 78 TGIALAMVCAARG-------YRCVLTMPETMSLER----RMLLRAYGAELILTPGADGMSGAIAKAEELAKT 138 (313)
T ss_dssp HHHHHHHHHHHHT-------CEEEEEEETTSCHHH----HHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-------CcEEEEECCCCCHHH----HHHHHHCCCEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 5677777777665 554444444333333 455667888888766433578888888777654
No 139
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=21.61 E-value=2.3e+02 Score=24.97 Aligned_cols=71 Identities=17% Similarity=0.177 Sum_probs=44.1
Q ss_pred cEEEEecCchhHHHHHHHHH----hhccCCCCcceeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEecccccccc
Q 026236 89 RIWTMVAGGGASVIYADTVG----DLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTD 164 (241)
Q Consensus 89 ~Ig~mvnGaGlaMatmD~i~----~~~~gg~pANFlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~n~T~ 164 (241)
+=-+++.+.+..=.+.|-+. .. |-+. .|..++|.++.+.+.++.+.+.+. +.+ .+|-++||.+
T Consensus 32 ~~~livtd~~~~~~~~~~v~~~L~~~--g~~~-~~~~~~ge~~~~~v~~~~~~~~~~---~~d---~IIavGGGsv---- 98 (370)
T 1jq5_A 32 NKTVVIADEIVWKIAGHTIVNELKKG--NIAA-EEVVFSGEASRNEVERIANIARKA---EAA---IVIGVGGGKT---- 98 (370)
T ss_dssp SEEEEEECHHHHHHTHHHHHHHHHTT--TCEE-EEEECCSSCBHHHHHHHHHHHHHT---TCS---EEEEEESHHH----
T ss_pred CeEEEEEChHHHHHHHHHHHHHHHHc--CCeE-EEEeeCCCCCHHHHHHHHHHHHhc---CCC---EEEEeCChHH----
Confidence 33455555554333444443 33 3233 367789999999999999988663 343 4788999973
Q ss_pred HHHHHHHHH
Q 026236 165 VATTFNGII 173 (241)
Q Consensus 165 ~d~iA~GIv 173 (241)
.| +|+.+.
T Consensus 99 ~D-~aK~iA 106 (370)
T 1jq5_A 99 LD-TAKAVA 106 (370)
T ss_dssp HH-HHHHHH
T ss_pred HH-HHHHHH
Confidence 33 556554
No 140
>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*
Probab=21.44 E-value=78 Score=28.35 Aligned_cols=46 Identities=17% Similarity=0.131 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhhhhhcccceeEEEEecCC--------ChhHHHHHHHHHHHHhCCCeE
Q 026236 168 TFNGIIRALREKESKLKAARMHIFVRRGGP--------NYQTGLAKMRALGEELGIPLE 218 (241)
Q Consensus 168 iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gt--------n~~~g~~~l~~~l~~~gi~i~ 218 (241)
.+.-|++|+++.-. .++||.||+... ..++..++.+. |++.|+.+.
T Consensus 210 ~~~eiv~aVr~avg----~d~pV~vRis~~~~~~~G~~~~~~~~~la~~-L~~~Gvd~i 263 (363)
T 3l5l_A 210 FLLETLAAVREVWP----ENLPLTARFGVLEYDGRDEQTLEESIELARR-FKAGGLDLL 263 (363)
T ss_dssp HHHHHHHHHHTTSC----TTSCEEEEEEEECSSSCHHHHHHHHHHHHHH-HHHTTCCEE
T ss_pred HHHHHHHHHHHHcC----CCceEEEEecchhcCCCCCCCHHHHHHHHHH-HHHcCCCEE
Confidence 45667888877532 368999999853 34555555444 677887743
No 141
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=21.07 E-value=3.2e+02 Score=21.81 Aligned_cols=75 Identities=13% Similarity=0.025 Sum_probs=46.3
Q ss_pred CCHHHHHHHHHHHhhcccCCCCcceEEEEEeccccccccHHHHHHHHHHHHHHhhhhhcccceeEEEEecCCChhHHHHH
Q 026236 126 PNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAK 205 (241)
Q Consensus 126 a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~n~T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g~~~ 205 (241)
.+.+..+.+.+.+.+. -+. + +.-+.|.- + . ...-.+|+.+++++.+. +....+.....+.+.+.+.
T Consensus 101 D~~~~g~~a~~~L~~~--G~~--~--i~~i~~~~-~-~-~~~R~~gf~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~ 166 (280)
T 3gyb_A 101 DDFRGAEIATKHLIDL--GHT--H--IAHLRVGS-G-A-GLRRFESFEATMRAHGL-----EPLSNDYLGPAVEHAGYTE 166 (280)
T ss_dssp CHHHHHHHHHHHHHHT--TCC--S--EEEECCSS-H-H-HHHHHHHHHHHHHHTTC-----CCEECCCCSCCCHHHHHHH
T ss_pred chHHHHHHHHHHHHHC--CCC--e--EEEEeCCC-c-h-HHHHHHHHHHHHHHcCc-----CCCcccccCCCCHHHHHHH
Confidence 3455677888888775 222 2 22333322 1 1 55667899999988763 3332234455677888888
Q ss_pred HHHHHHHhC
Q 026236 206 MRALGEELG 214 (241)
Q Consensus 206 l~~~l~~~g 214 (241)
++++|+...
T Consensus 167 ~~~~l~~~~ 175 (280)
T 3gyb_A 167 TLALLKEHP 175 (280)
T ss_dssp HHHHHHHCT
T ss_pred HHHHHhCCC
Confidence 899888753
No 142
>2nly_A BH1492 protein, divergent polysaccharide deacetylase hypothetical; PFAM04748, structural PSI, protein structure initiative; 2.50A {Bacillus halodurans} SCOP: c.6.2.7
Probab=20.94 E-value=3.9e+02 Score=22.73 Aligned_cols=76 Identities=21% Similarity=0.201 Sum_probs=52.3
Q ss_pred CCCHHHHHHHHHHHhhcccCCCCcceEEEEEeccccccccHHHHHHHHHHHHHHhhhhhcccceeEEEEecCCChhHHHH
Q 026236 125 APNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLA 204 (241)
Q Consensus 125 ~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~n~T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g~~ 204 (241)
+.+.+++.+.++..++.. |+..+ +.|.-|+-. |.-....+-+.+.+++.+ +..|=..+-.+ -.+
T Consensus 79 ~~s~~ei~~~l~~al~~v-P~a~G---vnNHmGS~~--T~~~~~m~~vm~~l~~~g-------L~fvDS~Ts~~-S~a-- 142 (245)
T 2nly_A 79 NLSVGEVKSRVRKAFDDI-PYAVG---LNNHMGSKI--VENEKIMRAILEVVKEKN-------AFIIDSGTSPH-SLI-- 142 (245)
T ss_dssp TCCHHHHHHHHHHHHHHS-TTCCE---EEEEECTTG--GGCHHHHHHHHHHHHHTT-------CEEEECCCCSS-CSH--
T ss_pred CCCHHHHHHHHHHHHHHC-CCcEE---Eecccccch--hcCHHHHHHHHHHHHHCC-------CEEEcCCCCcc-cHH--
Confidence 567899999999999873 55544 678888764 777778888999998865 33333333223 234
Q ss_pred HHHHHHHHhCCCeE
Q 026236 205 KMRALGEELGIPLE 218 (241)
Q Consensus 205 ~l~~~l~~~gi~i~ 218 (241)
.++-++.|+|..
T Consensus 143 --~~~A~~~gvp~~ 154 (245)
T 2nly_A 143 --PQLAEELEVPYA 154 (245)
T ss_dssp --HHHHHHTTCCEE
T ss_pred --HHHHHHcCCCeE
Confidence 466678899974
No 143
>2nql_A AGR_PAT_674P, isomerase/lactonizing enzyme; enolase, structural genomics, protein structure initiative, nysgxrc; 1.80A {Agrobacterium tumefaciens str} PDB: 4dn1_A
Probab=20.54 E-value=3.3e+02 Score=24.10 Aligned_cols=102 Identities=11% Similarity=-0.023 Sum_probs=59.0
Q ss_pred chhHHHHHHHHHhhc-------cCCC----CcceeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEeccccccccH
Q 026236 97 GGASVIYADTVGDLG-------YASE----LGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDV 165 (241)
Q Consensus 97 aGlaMatmD~i~~~~-------~gg~----pANFlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~n~T~~ 165 (241)
+|+.||..|+..... .||+ |. |.-+|...+.+++.++++-.... ..+.. =+++ |+- +.
T Consensus 124 ~aid~AlwDl~ak~~g~Pl~~llGg~~~~vp~-~~~~g~~~~~e~~~~~a~~~~~~---Gf~~v--Kik~-g~~----~~ 192 (388)
T 2nql_A 124 AALDIALWDIAGQEAGKSIRDLLGGGVDSFPA-YVSGLPERTLKARGELAKYWQDR---GFNAF--KFAT-PVA----DD 192 (388)
T ss_dssp HHHHHHHHHHHHHHHTSBHHHHTTCCCSEEEE-EEECCCCSSHHHHHHHHHHHHHT---TCCEE--EEEG-GGC----TT
T ss_pred HHHHHHHHHHHHHHcCCcHHHHhCCCCCceEe-eEEeCCCCCHHHHHHHHHHHHHh---CCCEE--EEeC-CCC----Ch
Confidence 678889999865431 1443 33 22233134778887777666553 23321 1343 321 22
Q ss_pred HHHHHHHHHHHHHhhhhhcccceeEEEEecCC-ChhHHHHHHHHHHHHhCCC
Q 026236 166 ATTFNGIIRALREKESKLKAARMHIFVRRGGP-NYQTGLAKMRALGEELGIP 216 (241)
Q Consensus 166 d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gt-n~~~g~~~l~~~l~~~gi~ 216 (241)
+. .-+++++++.-. .++|+.|...|. ..+++.+.++. |++.|+.
T Consensus 193 ~~--~e~v~avr~a~g----~d~~l~vDan~~~~~~~a~~~~~~-l~~~~i~ 237 (388)
T 2nql_A 193 GP--AAEIANLRQVLG----PQAKIAADMHWNQTPERALELIAE-MQPFDPW 237 (388)
T ss_dssp CH--HHHHHHHHHHHC----TTSEEEEECCSCSCHHHHHHHHHH-HGGGCCS
T ss_pred HH--HHHHHHHHHHhC----CCCEEEEECCCCCCHHHHHHHHHH-HhhcCCC
Confidence 22 456777776321 378888887654 56888888776 7888875
No 144
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A
Probab=20.48 E-value=1.4e+02 Score=24.64 Aligned_cols=49 Identities=22% Similarity=0.255 Sum_probs=34.5
Q ss_pred ccHHHHHHHHHHHHHHhhhhhccccee--EE-EEecC---CChhHHHHHHHHHHHHhCCCeEEcC
Q 026236 163 TDVATTFNGIIRALREKESKLKAARMH--IF-VRRGG---PNYQTGLAKMRALGEELGIPLEVYG 221 (241)
Q Consensus 163 T~~d~iA~GIv~A~~~~~~~~~~~~vP--iV-vRl~G---tn~~~g~~~l~~~l~~~gi~i~~~~ 221 (241)
..|-+=|+.|++|+++.. .++ |+ .|.-+ +...+| .+.|+++|+++.+..
T Consensus 92 ePC~~Ca~aIi~al~~~~------gI~rVV~~~~d~~~~~p~~~~g----~~~L~~aGI~V~~~~ 146 (190)
T 2nyt_A 92 SPCAACADRIIKTLSKTK------NLRLLILVGRLFMWEEPEIQAA----LKKLKEAGCKLRIMK 146 (190)
T ss_pred ChHHHHHHHHHHhhhhcC------CccEEEEEeecCCcCChHHHHH----HHHHHHCCCEEEEec
Confidence 589888999999999865 455 22 35443 234577 677888999987543
No 145
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=20.43 E-value=3.9e+02 Score=24.57 Aligned_cols=100 Identities=7% Similarity=-0.014 Sum_probs=50.0
Q ss_pred CCCCHHHHHHHHHHHhhcccCCCCcceEEEEEeccccccccHHHHHHHHHHHHHHhhhhhcccceeEEEEecCCCh----
Q 026236 124 GAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNY---- 199 (241)
Q Consensus 124 G~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~n~T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~---- 199 (241)
++.+++.+..+++.+-+. .+ ..+ ++-|||+- .+++-......+.++++. .+.=++...-...+
T Consensus 355 yaHnp~~i~a~l~al~~~-~~--~~r--ii~V~g~~-~~~r~k~~~~~~~~~~~~-------aD~vilt~~~~~~e~p~~ 421 (494)
T 4hv4_A 355 YGHHPTEVDATIKAARAG-WP--DKR--IVMLFQPH-RYTRTRDLYDDFANVLSQ-------VDVLLMLDVYAAGEPPIP 421 (494)
T ss_dssp CCCSHHHHHHHHHHHHHH-CT--TSE--EEEEECCB-CHHHHHHTHHHHHHHHTT-------SSEEEEECCBCTTCCCCT
T ss_pred CCCCHHHHHHHHHHHHhh-cC--CCe--EEEEEcCC-CCCchHHHHHHHHHHHhc-------CCEEEEeCCcCCccCCcC
Confidence 455778888888877543 12 222 45567753 233333333444444432 13333333221111
Q ss_pred hHHHHHHHHHHHHhCC-CeEEcCCCCCHHHHHHHHHHHhhh
Q 026236 200 QTGLAKMRALGEELGI-PLEVYGPEATMTGICKQAIDCIMS 239 (241)
Q Consensus 200 ~~g~~~l~~~l~~~gi-~i~~~~~~~~m~eav~~av~~~~~ 239 (241)
....+.|.+.+++.|. +++++. ++++|++.+.+.++.
T Consensus 422 g~~~~~l~~~~~~~g~~~~~~~~---~~~eAv~~a~~~a~~ 459 (494)
T 4hv4_A 422 GADSRALCRTIRNRGKLDPILVP---DSESAPEMLAQILNG 459 (494)
T ss_dssp TCSHHHHHHHHHTTTSCCCEEEC---CTTTHHHHHHHHCCT
T ss_pred CccHHHHHHHHHhhCCCCeEEeC---CHHHHHHHHHHhCCC
Confidence 0112233454555553 455554 899999999887653
No 146
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}
Probab=20.38 E-value=2.4e+02 Score=23.98 Aligned_cols=61 Identities=16% Similarity=0.064 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhhhhhcccceeEEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHhhh
Q 026236 168 TFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIMS 239 (241)
Q Consensus 168 iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~~~~~ 239 (241)
.+.++..+.+..+ +|.++-+..+-..+= ++.++..|-.++.++...+++++.+.|.+++++
T Consensus 76 ~g~a~A~~a~~~G-------~~~~iv~p~~~~~~k----~~~~~~~GA~v~~~~~~~~~~~~~~~a~~l~~~ 136 (308)
T 2egu_A 76 TGIGLAMVAAAKG-------YKAVLVMPDTMSLER----RNLLRAYGAELVLTPGAQGMRGAIAKAEELVRE 136 (308)
T ss_dssp HHHHHHHHHHHHT-------CEEEEEEESCSCHHH----HHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-------CCEEEEECCCCCHHH----HHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHH
Confidence 5667777777765 554444444333333 445677788887766433578888887777654
No 147
>2ife_A Protein (translation initiation factor IF3); gene regulation; NMR {Escherichia coli} SCOP: d.68.1.1
Probab=20.29 E-value=1.1e+02 Score=22.84 Aligned_cols=40 Identities=25% Similarity=0.455 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhhhhhcccceeEEEEecCCC---hhHHHHHHHHHHHHhC
Q 026236 169 FNGIIRALREKESKLKAARMHIFVRRGGPN---YQTGLAKMRALGEELG 214 (241)
Q Consensus 169 A~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn---~~~g~~~l~~~l~~~g 214 (241)
.+-+.++|++-. ++.|.||..|-. .+.|.++|.++.+++.
T Consensus 31 ~k~a~~FL~~Gd------KVKvti~fRGRE~~h~e~g~~lL~r~~~~l~ 73 (100)
T 2ife_A 31 LRSLIRFLEEGD------KAKITLRFRGREMAHQQIGMEVLNRVKDDLQ 73 (100)
T ss_dssp HHHHHHHHHTTE------EEEEEECCSSCTTCCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCC------EEEEEEEECCccccCHHHHHHHHHHHHHHhh
Confidence 566677776643 899999999965 7889888888777753
No 148
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=20.24 E-value=3.8e+02 Score=22.31 Aligned_cols=78 Identities=12% Similarity=0.148 Sum_probs=49.0
Q ss_pred CCCHHHHHHHHHHHhhcccCCCCcceEEEEEeccccccccHHHHHHHHHHHHHHhhhhhcccce-eEEEEecCCChhHHH
Q 026236 125 APNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARM-HIFVRRGGPNYQTGL 203 (241)
Q Consensus 125 ~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~n~T~~d~iA~GIv~A~~~~~~~~~~~~v-PiVvRl~Gtn~~~g~ 203 (241)
..+.+-.+.+.+.+++. -+. + +.-+.| -.+......-.+|..+++++.+. ++ +..+.-...+.+.|.
T Consensus 163 ~D~~~~~~~a~~~L~~~--G~~--~--I~~i~~-~~~~~~~~~R~~Gf~~al~~~g~-----~~~~~~~~~~~~~~~~~~ 230 (338)
T 3dbi_A 163 CDHKQTSFNAVAELINA--GHQ--E--IAFLTG-SMDSPTSIERLAGYKDALAQHGI-----ALNEKLIANGKWTPASGA 230 (338)
T ss_dssp BCHHHHHHHHHHHHHHT--TCC--S--EEEECC-CTTCHHHHHHHHHHHHHHHHTTC-----CCCGGGEECCCSSHHHHH
T ss_pred EChHHHHHHHHHHHHHC--CCC--E--EEEEeC-CCCCccHHHHHHHHHHHHHHCCC-----CCCcceEEeCCCCHHHHH
Confidence 34556688888888875 222 2 223334 32224555668999999999863 22 223444556788898
Q ss_pred HHHHHHHHHhC
Q 026236 204 AKMRALGEELG 214 (241)
Q Consensus 204 ~~l~~~l~~~g 214 (241)
+.++++|+...
T Consensus 231 ~~~~~ll~~~~ 241 (338)
T 3dbi_A 231 EGVEMLLERGA 241 (338)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHcCCC
Confidence 88889887543
No 149
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=20.06 E-value=2.2e+02 Score=20.81 Aligned_cols=86 Identities=17% Similarity=0.083 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHhhcccCCC-CcceEEEEEeccccccccHHHHHH-HHHHHHHHhhhhhcccceeEEEEecCCChhHHHH
Q 026236 127 NEEEVLQYARVVIDCATADP-DGRKRALLIGGGIANFTDVATTFN-GIIRALREKESKLKAARMHIFVRRGGPNYQTGLA 204 (241)
Q Consensus 127 ~~~~v~~a~~iil~~~~~~~-~~~~i~inI~GGI~n~T~~d~iA~-GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g~~ 204 (241)
+.+.+.+.+.-.+.. ++ ..+.++++. .++ +.+|..+- .+++..++.. +.-+-+.+.|.+.. -
T Consensus 29 ~a~~~~~~l~~~~~~---~~~~~~~vvlDl-s~v---~~iDssgl~~L~~~~~~~~------~~g~~l~l~~~~~~-v-- 92 (130)
T 2kln_A 29 NAEDFRRRALTVVDQ---DPGQVEWFVLNA-ESN---VEVDLTALDALDQLRTELL------RRGIVFAMARVKQD-L-- 92 (130)
T ss_dssp THHHHHHHHHHHTTS---SSSCCEEEEEEC-SCC---SSSBCSTTTHHHHHHHHHH------TTTEEEEEECCSSH-H--
T ss_pred hHHHHHHHHHHHHhc---CCCCceEEEEEC-CCC---ChhhHHHHHHHHHHHHHHH------HCCCEEEEEcCCHH-H--
Confidence 456666655554432 11 233355555 444 45565543 3444444443 23345667777743 3
Q ss_pred HHHHHHHHhCCC--e---EEcCCCCCHHHHHHHH
Q 026236 205 KMRALGEELGIP--L---EVYGPEATMTGICKQA 233 (241)
Q Consensus 205 ~l~~~l~~~gi~--i---~~~~~~~~m~eav~~a 233 (241)
+++|+.+|+. + .+|. +.++|+..+
T Consensus 93 --~~~l~~~gl~~~~~~~~i~~---t~~~Al~~~ 121 (130)
T 2kln_A 93 --RESLRAASLLDKIGEDHIFM---TLPTAVQAF 121 (130)
T ss_dssp --HHHHHHCTTHHHHCTTEEES---CHHHHHHHH
T ss_pred --HHHHHHcCChhhcCcceeEC---CHHHHHHHH
Confidence 5777777763 2 3454 788888654
No 150
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=20.05 E-value=3.6e+02 Score=21.95 Aligned_cols=73 Identities=16% Similarity=0.130 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHhhcccCCCCcceEEEEEeccccccccHHHHHHHHHHHHHHhhhhhcccceeEEEEecCCChhHHHHHH
Q 026236 127 NEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKM 206 (241)
Q Consensus 127 ~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~n~T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g~~~l 206 (241)
+.+-.+.+.+.+++. -+. + +.-+.| -.+.....+-.+|..+|+++.+ +++.+.....+.+.+.+.+
T Consensus 115 ~~~~~~~a~~~L~~~--G~~--~--I~~i~~-~~~~~~~~~R~~Gf~~al~~~g-------~~~~~~~~~~~~~~~~~~~ 180 (295)
T 3hcw_A 115 NILASENLTRHVIEQ--GVD--E--LIFITE-KGNFEVSKDRIQGFETVASQFN-------LDYQIIETSNEREVILNYM 180 (295)
T ss_dssp HHHHHHHHHHHHHHH--CCS--E--EEEEEE-SSCCHHHHHHHHHHHHHHHHTT-------CEEEEEEECSCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHc--CCc--c--EEEEcC-CccchhHHHHHHHHHHHHHHcC-------CCeeEEeccCCHHHHHHHH
Confidence 455678888888775 222 2 222233 2222445666789999998875 3433455667788888888
Q ss_pred HHHHHHh
Q 026236 207 RALGEEL 213 (241)
Q Consensus 207 ~~~l~~~ 213 (241)
+++++..
T Consensus 181 ~~~l~~~ 187 (295)
T 3hcw_A 181 QNLHTRL 187 (295)
T ss_dssp HHHHHHH
T ss_pred HHHHhhc
Confidence 8888875
Done!