Query 026236
Match_columns 241
No_of_seqs 118 out of 854
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 08:48:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026236.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026236hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1eucb1 c.23.4.1 (B:246-393) S 100.0 3.9E-56 2.8E-60 366.1 15.9 138 75-237 10-147 (148)
2 d2nu7b1 c.23.4.1 (B:239-388) S 100.0 1.1E-55 8.2E-60 364.3 17.1 140 75-239 10-149 (150)
3 d2csua3 c.23.4.1 (A:291-453) A 99.5 9.3E-13 6.8E-17 106.1 15.7 125 89-237 5-155 (163)
4 d2csua2 c.23.4.1 (A:130-290) A 96.7 0.0041 3E-07 49.2 9.4 123 86-233 19-154 (161)
5 d1euca2 c.23.4.1 (A:131-306) S 95.2 0.068 4.9E-06 42.1 10.1 132 87-235 23-171 (176)
6 d1oi7a2 c.23.4.1 (A:122-288) S 95.1 0.18 1.3E-05 39.2 12.2 122 87-232 23-161 (167)
7 d2nu7a2 c.23.4.1 (A:122-287) S 93.5 0.22 1.6E-05 38.7 9.4 123 87-233 23-162 (166)
8 d7reqa2 c.23.6.1 (A:561-728) M 90.3 1.3 9.3E-05 34.5 10.5 114 96-239 51-164 (168)
9 d1ccwa_ c.23.6.1 (A:) Glutamat 77.0 9.2 0.00067 28.1 9.5 109 103-236 23-133 (137)
10 d1guda_ c.93.1.1 (A:) D-allose 64.8 27 0.0019 26.7 11.6 90 122-237 171-260 (288)
11 d7reqb2 c.23.6.1 (B:476-638) M 64.3 23 0.0017 26.6 9.4 71 152-237 89-159 (163)
12 d1tjya_ c.93.1.1 (A:) AI-2 rec 60.2 32 0.0024 26.1 13.5 90 121-237 166-255 (316)
13 d1pcha_ d.94.1.1 (A:) Histidin 56.7 5.8 0.00042 27.4 4.0 29 187-215 57-85 (88)
14 d1jx6a_ c.93.1.1 (A:) Quorum-s 55.6 45 0.0032 26.3 12.4 121 87-237 172-297 (338)
15 d1ptfa_ d.94.1.1 (A:) Histidin 55.0 6.5 0.00048 26.9 4.1 29 187-215 58-86 (87)
16 d1pdoa_ c.54.1.1 (A:) IIA doma 54.8 32 0.0023 24.4 12.6 120 90-240 2-124 (129)
17 d2nzug1 c.93.1.1 (G:58-332) Gl 53.9 41 0.003 25.3 10.9 103 104-238 144-249 (275)
18 d1h4xa_ c.13.2.1 (A:) Anti-sig 51.7 28 0.002 23.5 7.3 83 128-232 25-109 (111)
19 d1e8ca2 c.59.1.1 (A:338-497) U 49.9 43 0.0031 24.4 9.0 106 114-239 12-119 (160)
20 d1lu4a_ c.47.1.10 (A:) Soluble 48.7 37 0.0027 23.4 7.9 62 146-219 22-83 (134)
21 d3beda1 c.54.1.1 (A:1-132) PTS 48.0 43 0.0032 23.9 9.0 110 97-240 11-122 (132)
22 d2hpra_ d.94.1.1 (A:) Histidin 47.2 10 0.00073 25.9 4.0 29 187-215 57-85 (87)
23 d1ozha1 c.31.1.3 (A:188-366) C 46.5 13 0.00097 27.8 5.1 45 124-179 3-47 (179)
24 d2ji7a1 c.31.1.3 (A:195-369) O 43.4 13 0.00095 27.7 4.6 53 126-196 4-56 (175)
25 d1ka5a_ d.94.1.1 (A:) Histidin 42.6 13 0.00097 25.3 4.1 29 187-215 58-86 (88)
26 d1jx6a_ c.93.1.1 (A:) Quorum-s 41.5 75 0.0055 24.8 10.6 98 126-235 153-251 (338)
27 d1yl7a1 c.2.1.3 (A:2-105,A:215 41.0 16 0.0011 26.8 4.5 67 162-240 51-118 (135)
28 d3by5a1 c.151.1.1 (A:8-130) Co 39.8 38 0.0027 24.2 6.5 51 163-221 12-62 (123)
29 d1oaoa_ e.26.1.2 (A:) Bifuncti 39.5 41 0.003 31.1 8.2 60 152-218 543-602 (673)
30 d1dxla2 c.3.1.5 (A:153-275) Di 38.7 22 0.0016 24.8 5.0 55 151-218 27-84 (123)
31 d2dria_ c.93.1.1 (A:) D-ribose 38.3 70 0.0051 23.6 12.0 61 164-238 189-249 (271)
32 d1vc1a_ c.13.2.1 (A:) Anti-sig 37.6 46 0.0034 22.0 6.5 70 127-215 27-97 (110)
33 d1th8b_ c.13.2.1 (B:) Anti-sig 37.3 53 0.0038 21.8 7.7 82 128-231 26-110 (115)
34 d2a21a1 c.1.10.4 (A:1002-1264) 33.1 56 0.004 26.0 7.2 48 169-218 18-78 (263)
35 d1vlja_ e.22.1.2 (A:) NADH-dep 32.7 73 0.0053 26.4 8.3 63 101-176 53-115 (398)
36 d3b48a1 c.54.1.2 (A:1-132) Unc 32.7 61 0.0044 22.8 6.7 116 93-239 8-129 (132)
37 d1i96v_ d.68.1.1 (V:) Translat 32.5 35 0.0025 23.0 4.9 45 164-214 15-62 (86)
38 d1tiga_ d.68.1.1 (A:) Translat 31.4 31 0.0023 23.4 4.6 43 166-214 18-63 (88)
39 d2djia1 c.31.1.3 (A:187-363) P 31.4 41 0.003 24.7 5.7 51 126-196 6-56 (177)
40 d1onfa2 c.3.1.5 (A:154-270) Gl 30.2 45 0.0033 22.9 5.5 54 152-218 25-81 (117)
41 d1zzoa1 c.47.1.10 (A:45-178) L 30.0 75 0.0055 21.4 7.7 59 146-216 23-81 (134)
42 d2dfaa1 c.6.2.5 (A:1-250) Hypo 28.6 69 0.0051 25.7 7.0 141 79-239 25-202 (250)
43 d8abpa_ c.93.1.1 (A:) L-arabin 28.6 1.1E+02 0.0082 23.0 10.8 66 103-181 154-220 (305)
44 d1cm3a_ d.94.1.1 (A:) Histidin 28.2 27 0.002 23.4 3.7 27 187-213 58-84 (85)
45 d3grsa2 c.3.1.5 (A:166-290) Gl 27.9 46 0.0034 22.9 5.2 54 152-218 25-81 (125)
46 d1su7a_ e.26.1.2 (A:) Ni-conta 27.3 85 0.0062 28.6 8.1 60 152-218 517-576 (633)
47 d1dnpa2 c.28.1.1 (A:1-200) DNA 27.3 1E+02 0.0074 22.8 7.6 57 170-227 52-108 (200)
48 d3bula2 c.23.6.1 (A:741-896) M 26.9 1.1E+02 0.0079 22.3 10.9 109 98-237 22-131 (156)
49 d1q6za1 c.31.1.3 (A:182-341) B 26.6 41 0.003 24.0 4.8 43 126-179 4-46 (160)
50 d1h6va2 c.3.1.5 (A:171-292) Ma 25.5 83 0.006 21.5 6.2 53 152-218 23-78 (122)
51 d1jfua_ c.47.1.10 (A:) Membran 24.0 1.2E+02 0.0084 21.6 7.6 61 146-216 54-115 (176)
52 d1byka_ c.93.1.1 (A:) Trehalos 24.0 1.3E+02 0.0096 22.3 9.9 113 88-237 116-235 (255)
53 d1xrsb1 c.23.6.1 (B:102-261) D 24.0 1.3E+02 0.0093 22.0 11.5 96 119-239 59-157 (160)
54 d1ls1a2 c.37.1.10 (A:89-295) G 23.8 62 0.0045 24.8 5.7 45 195-239 46-90 (207)
55 d1ybha1 c.31.1.3 (A:281-459) A 23.5 65 0.0047 23.6 5.6 28 126-160 4-31 (179)
56 d1ccwa_ c.23.6.1 (A:) Glutamat 23.2 63 0.0046 23.1 5.3 47 190-236 7-53 (137)
57 d1mo1a_ d.94.1.1 (A:) Crh, cat 23.2 29 0.0021 23.4 3.0 26 187-212 58-83 (87)
58 d2qy9a2 c.37.1.10 (A:285-495) 23.1 59 0.0043 25.2 5.4 45 195-239 45-89 (211)
59 d1v6ta_ c.6.2.5 (A:) Hypotheti 23.0 1.3E+02 0.0098 23.9 7.8 141 79-239 25-202 (254)
60 d1ojta2 c.3.1.5 (A:276-400) Di 21.7 46 0.0034 23.2 4.1 55 151-218 28-85 (125)
61 d1o5za1 c.59.1.2 (A:294-430) F 21.6 1.1E+02 0.0077 20.9 6.2 91 119-231 14-104 (137)
62 d1rrma_ e.22.1.2 (A:) Lactalde 21.6 1.8E+02 0.013 23.6 8.7 74 91-177 33-111 (385)
63 d1lvla2 c.3.1.5 (A:151-265) Di 21.6 78 0.0057 21.2 5.3 54 152-218 24-80 (115)
64 d1v59a2 c.3.1.5 (A:161-282) Di 21.4 75 0.0054 21.7 5.2 55 151-218 25-82 (122)
65 d1m6ia2 c.3.1.5 (A:264-400) Ap 20.8 79 0.0057 21.9 5.3 58 152-218 40-101 (137)
66 d1u3da2 c.28.1.1 (A:13-197) Cr 20.5 1.1E+02 0.0079 22.3 6.4 54 171-228 50-103 (185)
67 d1ebda2 c.3.1.5 (A:155-271) Di 20.0 1.1E+02 0.0077 20.4 5.8 54 152-218 25-81 (117)
No 1
>d1eucb1 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Probab=100.00 E-value=3.9e-56 Score=366.05 Aligned_cols=138 Identities=25% Similarity=0.361 Sum_probs=129.6
Q ss_pred ccCccceEEecCCccEEEEecCchhHHHHHHHHHhhccCCCCcceeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEE
Q 026236 75 TSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALL 154 (241)
Q Consensus 75 ~g~~l~yv~L~~dG~Ig~mvnGaGlaMatmD~i~~~~~gg~pANFlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~in 154 (241)
+| |+||+| |||||||+|||||+|+|||+|+++ ||+||||||+||+|+.++|++||++|+++ +++++||||
T Consensus 10 ~~--l~yv~L--dG~IG~i~NGAGlaMaTmD~i~~~--Gg~pANFlDiGGga~~e~v~~al~iil~d----~~Vk~IlIN 79 (148)
T d1eucb1 10 YD--LKYIGL--DGNIACFVNGAGLAMATCDIIFLN--GGKPANFLDLGGGVKESQVYQAFKLLTAD----PKVEAILVN 79 (148)
T ss_dssp TT--CEEEEC--SCSEEEEESSHHHHHHHHHHHHHT--TCCBSEEEECCSSCCHHHHHHHHHHTTSC----TTCCEEEEE
T ss_pred cC--CcEEEe--cCcEEEEecCCccchhHHHHHHHc--CCCeeeEEecCCCCCHHHHHHHHHHHHCC----CCccEEEEE
Confidence 56 779999 999999999999999999999999 99999999999999999999999999998 455568999
Q ss_pred EeccccccccHHHHHHHHHHHHHHhhhhhcccceeEEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHH
Q 026236 155 IGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAI 234 (241)
Q Consensus 155 I~GGI~n~T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av 234 (241)
||||| ||||++|+||++|+++.+. ++||||||.|||+++| |++|+++|+|+++++ +|+||+++||
T Consensus 80 IfGGI---~rcD~vA~GIv~A~~e~~~-----~iPiVVRL~Gtn~eeg----~~iL~~sgl~i~~~~---~l~eAa~~aV 144 (148)
T d1eucb1 80 IFGGI---VNCAIIANGITKACRELEL-----KVPLVVRLEGTNVHEA----QNILTNSGLPITSAV---DLEDAAKKAV 144 (148)
T ss_dssp EECSS---SCHHHHHHHHHHHHHHHTC-----CSCEEEEEESTTHHHH----HHHHHTTCSSEEECS---SHHHHHHHHH
T ss_pred eeEee---hhHHHHHHHHHHHHHhcCC-----CccEEEEeccCChHHH----HHHHHHCCCCeEEeC---CHHHHHHHHH
Confidence 99999 7999999999999999874 8999999999999999 999999999999664 9999999999
Q ss_pred HHh
Q 026236 235 DCI 237 (241)
Q Consensus 235 ~~~ 237 (241)
+.+
T Consensus 145 ~~~ 147 (148)
T d1eucb1 145 ASV 147 (148)
T ss_dssp HTC
T ss_pred Hhc
Confidence 864
No 2
>d2nu7b1 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=1.1e-55 Score=364.30 Aligned_cols=140 Identities=23% Similarity=0.310 Sum_probs=131.0
Q ss_pred ccCccceEEecCCccEEEEecCchhHHHHHHHHHhhccCCCCcceeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEE
Q 026236 75 TSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALL 154 (241)
Q Consensus 75 ~g~~l~yv~L~~dG~Ig~mvnGaGlaMatmD~i~~~~~gg~pANFlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~in 154 (241)
++ |+||+| |||||||+|||||+|+|||+|+++ ||+||||||+||+|+.++|++||+++++| |+ +++||||
T Consensus 10 ~~--l~yv~L--dG~Ig~i~nGAGlamaTmD~i~~~--Gg~pANFlDiGG~a~~e~v~~al~lil~d--~~--vk~IlIN 79 (150)
T d2nu7b1 10 WE--LNYVAL--DGNIGCMVNGAGLAMGTMDIVKLH--GGEPANFLDVGGGATKERVTEAFKIILSD--DK--VKAVLVN 79 (150)
T ss_dssp TT--CEEEEC--SSSEEEEESSHHHHHHHHHHHHHT--TCCBCEEEECCSCCCHHHHHHHHHHHHTS--TT--CCEEEEE
T ss_pred cC--CcEEEe--cCcEEEEEcCCccchhhHHHHHHC--CCCeeEEEecCCCccHHHHHHHHHHHHcC--CC--CCEEEEE
Confidence 56 779999 999999999999999999999999 99999999999999999999999999998 44 4568999
Q ss_pred EeccccccccHHHHHHHHHHHHHHhhhhhcccceeEEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHH
Q 026236 155 IGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAI 234 (241)
Q Consensus 155 I~GGI~n~T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av 234 (241)
||||| ||||++|+||++|+++.+ .++||||||.|||+|+| +++|+++|+|++++ ++|+|||++||
T Consensus 80 ifGGI---~rcd~vA~GIv~A~k~~~-----~~iPiVVRl~Gtn~eeg----~~iL~~~gl~i~~~---~~l~eAa~~aV 144 (150)
T d2nu7b1 80 IFGGI---VRCDLIADGIIGAVAEVG-----VNVPVVVRLEGNNAELG----AKKLADSGLNIIAA---KGLTDAAQQVV 144 (150)
T ss_dssp EESCS---SCHHHHHHHHHHHHHHHT-----CCSCEEEEEESTTHHHH----HHHHHHHCSSEEEC---SSHHHHHHHHH
T ss_pred Eeeee---ehhHHHHHHHHHHHHhcC-----CCCcEEEEecCCCHHHH----HHHHHHCCCCeEEe---CCHHHHHHHHH
Confidence 99999 799999999999999987 49999999999999999 89999999999865 49999999999
Q ss_pred HHhhh
Q 026236 235 DCIMS 239 (241)
Q Consensus 235 ~~~~~ 239 (241)
++++.
T Consensus 145 ~lakg 149 (150)
T d2nu7b1 145 AAVEG 149 (150)
T ss_dssp HTTTT
T ss_pred HHhcC
Confidence 99874
No 3
>d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=99.46 E-value=9.3e-13 Score=106.09 Aligned_cols=125 Identities=19% Similarity=0.292 Sum_probs=101.2
Q ss_pred cEEEEecCchhHHHHHHHHHhhccCCC---------------------CcceeccCCCCCHHHHHHHHHHHhhcccCCCC
Q 026236 89 RIWTMVAGGGASVIYADTVGDLGYASE---------------------LGNYAEYSGAPNEEEVLQYARVVIDCATADPD 147 (241)
Q Consensus 89 ~Ig~mvnGaGlaMatmD~i~~~~~gg~---------------------pANFlD~GG~a~~~~v~~a~~iil~~~~~~~~ 147 (241)
+|+++.|+||.++.+.|.+..+ |.+ +.|.+|++|+++.+.+.++++.++++ ++++
T Consensus 5 rvaiit~sGG~~~l~aD~~~~~--Gl~l~~l~~~t~~~L~~~lp~~~~~~NPlD~~~~~~~~~~~~~l~~~~~d--~~vd 80 (163)
T d2csua3 5 KVAIMTNAGGPGVLTADELDKR--GLKLATLEEKTIEELRSFLPPMAAVKNPVDMIASARGEDYYRTAKLLLQD--PNVD 80 (163)
T ss_dssp EEEEEESCHHHHHHHHHHHHTT--TCEECCCCHHHHHHHHHHSCTTCEESSEEECCTTCCHHHHHHHHHHHHHS--TTCS
T ss_pred eEEEEECChHHHHHHHHHHHHc--CCccCCCCHHHHHHHHHhCCCcccCCCcccccCCCCHHHHHHHHHHHHcC--CCcC
Confidence 4999999999999999999998 554 57999999999999999999999998 6666
Q ss_pred cceEEEEEe----ccccccccHHHHHHHHHHHHHHhhhhhcccceeEE-EEecCCChhHHHHHHHHHHHHhCCCeEEcCC
Q 026236 148 GRKRALLIG----GGIANFTDVATTFNGIIRALREKESKLKAARMHIF-VRRGGPNYQTGLAKMRALGEELGIPLEVYGP 222 (241)
Q Consensus 148 ~~~i~inI~----GGI~n~T~~d~iA~GIv~A~~~~~~~~~~~~vPiV-vRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~ 222 (241)
. +++.+. ++. ...+.++.+++++++... ++||+ +++.|+..+++ ++.|++.|+|++
T Consensus 81 ~--v~v~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-----~kpv~~~~~~~~~~~~~----~~~l~~~Gip~f---- 141 (163)
T d2csua3 81 M--LIAICVVPTFAGM----TLTEHAEGIIRAVKEVNN-----EKPVLAMFMAGYVSEKA----KELLEKNGIPTY---- 141 (163)
T ss_dssp E--EEEEEECCCSTTC----CSSHHHHHHHHHHHHHCC-----CCCEEEEEECTTTTHHH----HHHHHTTTCCEE----
T ss_pred E--EEEeeccCCcccc----cHHHHHHHHHHHHHHhcC-----CCcEEEEECCCCChHHH----HHHHHHCCCCcC----
Confidence 5 344343 333 345688999999998763 78875 58889999999 899999999965
Q ss_pred CCCHHHHHHHHHHHh
Q 026236 223 EATMTGICKQAIDCI 237 (241)
Q Consensus 223 ~~~m~eav~~av~~~ 237 (241)
.+.++|++..-.+.
T Consensus 142 -~~pe~a~~Al~~l~ 155 (163)
T d2csua3 142 -ERPEDVASAAYALV 155 (163)
T ss_dssp -SSHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHH
Confidence 38888887655443
No 4
>d2csua2 c.23.4.1 (A:130-290) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=96.72 E-value=0.0041 Score=49.19 Aligned_cols=123 Identities=12% Similarity=0.145 Sum_probs=82.5
Q ss_pred CCccEEEEecCchhHHHHHHHHHhhccCCCCcceeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEeccccccccH
Q 026236 86 PKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDV 165 (241)
Q Consensus 86 ~dG~Ig~mvnGaGlaMatmD~i~~~~~gg~pANFlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~n~T~~ 165 (241)
+.|.||++.--++++...++.+... |--..-+.-+|+.+.. .+..+++.+.+| |+++++ ++-+= ++ .+-
T Consensus 19 ~~G~valiSqSG~l~~~~~~~~~~~--g~G~s~~vs~Gn~~~~-~~~d~l~~l~~D--~~t~~i--~l~~E-~~---~~~ 87 (161)
T d2csua2 19 KKGNVAFISQSGALGAGIVYKTIKE--DIGFSKFISVGNMADV-DFAELMEYLADT--EEDKAI--ALYIE-GV---RNG 87 (161)
T ss_dssp EECSEEEEESCHHHHHHHHHHHHHT--TCEESEEEECTTCCSS-CHHHHHHHHTTC--SSCCEE--EEEES-CC---SCH
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhC--CCCeeEEEecCCcccc-CHHHHHHHHhcC--CCCcEE--EEEec-CC---cCH
Confidence 3699999999999999999999998 5577888889988876 488999999998 666653 33222 22 132
Q ss_pred HHHHHHHHHHHHHhhhhhcccceeEEEEecCCChhHH-------------HHHHHHHHHHhCCCeEEcCCCCCHHHHHHH
Q 026236 166 ATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTG-------------LAKMRALGEELGIPLEVYGPEATMTGICKQ 232 (241)
Q Consensus 166 d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g-------------~~~l~~~l~~~gi~i~~~~~~~~m~eav~~ 232 (241)
+..+++.++... ++|||+=..|....-. -+....++++.|+ ... ++++|.+..
T Consensus 88 ----~~f~~~~r~~~~-----~Kpvv~~k~G~s~~g~~aa~sHtga~ag~~~~~~a~~~~aGv--i~v---~~~~el~~~ 153 (161)
T d2csua2 88 ----KKFMEVAKRVTK-----KKPIIALKAGKSESGARAASSHTGSLAGSWKIYEAAFKQSGV--LVA---NTIDEMLSM 153 (161)
T ss_dssp ----HHHHHHHHHHHH-----HSCEEEEECC------------------CHHHHHHHHHHTTC--EEE---SSHHHHHHH
T ss_pred ----HHHHHHHHHHhc-----cCCeeEEEeecccccccccccccccccccHHHHHHHHHHCCc--eEe---CCHHHHHHH
Confidence 455666666543 5788876666543311 1223577888897 322 478887665
Q ss_pred H
Q 026236 233 A 233 (241)
Q Consensus 233 a 233 (241)
+
T Consensus 154 a 154 (161)
T d2csua2 154 A 154 (161)
T ss_dssp H
T ss_pred H
Confidence 4
No 5
>d1euca2 c.23.4.1 (A:131-306) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Probab=95.24 E-value=0.068 Score=42.14 Aligned_cols=132 Identities=12% Similarity=0.116 Sum_probs=79.8
Q ss_pred CccEEEEecCchhHHHHHHHHHhhccCCCCcceeccCCCCCH-HHHHHHHHHHhhcccCCCCcceEEEEEeccccccccH
Q 026236 87 KGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNE-EEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDV 165 (241)
Q Consensus 87 dG~Ig~mvnGaGlaMatmD~i~~~~~gg~pANFlD~GG~a~~-~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~n~T~~ 165 (241)
.|+||++.--++++...++..... |-.-.-+.-+|++... ..+...++.+.+| |+++++.+++..++ +-
T Consensus 23 ~G~iaivSQSG~l~~~l~~~~~~~--g~g~~~~~~~g~~~~~~~~~~d~l~~~~~d--~~t~~i~~~~E~~~------~~ 92 (176)
T d1euca2 23 KGRIGIVSRSGTLTYEAVHQTTQV--GLGQSLCVGIGGDPFNGTDFTDCLEIFLND--PATEGIILIGEIGG------NA 92 (176)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHT--TCCEEEEEECCSCSSCSCCHHHHHHHHHHC--TTCCEEEEEEESSS------SH
T ss_pred CCCEEEEeCCcHHHHHHHHHHHhc--CCceEEEEecccchhhhhHHHHHHHHHHhh--ccCcccceEEEeec------cc
Confidence 699999999999999999999888 5445555666666432 3467788899998 66665333322222 33
Q ss_pred HHHHHHHHHHHHHhhhhhcccceeEEEEecCCChhH----------------HHHHHHHHHHHhCCCeEEcCCCCCHHHH
Q 026236 166 ATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQT----------------GLAKMRALGEELGIPLEVYGPEATMTGI 229 (241)
Q Consensus 166 d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~----------------g~~~l~~~l~~~gi~i~~~~~~~~m~ea 229 (241)
...++...++.+... .++|||+--.|..... .-+....+++++|+ .+..+-++|-+.
T Consensus 93 ~~~~~~~~~a~~~~~-----~~kPvv~~k~grs~~~~~~~~~a~s~tgs~ags~~~~~aafrqaGv--i~v~s~~El~~~ 165 (176)
T d1euca2 93 EENAAEFLKQHNSGP-----KSKPVVSFIAGLTAPPGRRMGHAGAIIAGGKGGAKEKITALQSAGV--VVSMSPAQLGTT 165 (176)
T ss_dssp HHHHHHHHHHHSSSS-----SCCCEEEEEECTTCCTTSCCSSTTCCCBTTBSCHHHHHHHHHHTTC--EECSSGGGHHHH
T ss_pred hhhhHHHHHHHHhcc-----CCCceEEEeccccccccccccccchhccCCCCCHHHHHHHHHHCCC--eEcCCHHHHHHH
Confidence 334444444444333 4799888655432100 01334678899997 433333344445
Q ss_pred HHHHHH
Q 026236 230 CKQAID 235 (241)
Q Consensus 230 v~~av~ 235 (241)
++++.+
T Consensus 166 l~~~~~ 171 (176)
T d1euca2 166 IYKEFE 171 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 6
>d1oi7a2 c.23.4.1 (A:122-288) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=95.08 E-value=0.18 Score=39.22 Aligned_cols=122 Identities=14% Similarity=0.092 Sum_probs=77.5
Q ss_pred CccEEEEecCchhHHHHHHHHHhhccCCCCcceeccCCCCCH-HHHHHHHHHHhhcccCCCCcceEEEEEeccccccccH
Q 026236 87 KGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNE-EEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDV 165 (241)
Q Consensus 87 dG~Ig~mvnGaGlaMatmD~i~~~~~gg~pANFlD~GG~a~~-~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~n~T~~ 165 (241)
.|+||++.--++++...++..... |--..-+.-+|+++.. ......++.+.+| |++++ |++-+-| + .+
T Consensus 23 ~G~va~iSQSG~~~~~~~~~~~~~--g~g~s~~~~~G~~~~~~~~~~d~l~~~~~D--~~t~v--I~l~~E~-~---~~- 91 (167)
T d1oi7a2 23 RGRVGIISRSGTLTYEAAAALSQA--GLGTTTTVGIGGDPVIGTTFKDLLPLFNED--PETEA--VVLIGEI-G---GS- 91 (167)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHT--TCCEEEEEECCSSSCCSSCHHHHHHHHHTC--TTCCE--EEEEECS-S---SS-
T ss_pred CCcEEEEEeccHHHHHHHHHHHHc--CCCceeEEEecceeecCchHHHHHHHHhhc--cccce--eeEeeec-c---ch-
Confidence 599999999999999999999998 6566777888887653 3366788888888 55554 4443333 3 12
Q ss_pred HHHHHHHHHHHHHhhhhhcccceeEEEEecCCChhHHH----------------HHHHHHHHHhCCCeEEcCCCCCHHHH
Q 026236 166 ATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGL----------------AKMRALGEELGIPLEVYGPEATMTGI 229 (241)
Q Consensus 166 d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g~----------------~~l~~~l~~~gi~i~~~~~~~~m~ea 229 (241)
.+-+.++.++... +.|+|+=..|.....+. +...+.+++.|+.. .++++|.
T Consensus 92 ---~~~f~~~~~~~~~-----~kpvvv~~~g~~a~~~~~~~~a~a~~~s~~g~~~~~~aaf~qaGv~~-----v~~~~El 158 (167)
T d1oi7a2 92 ---DEEEAAAWVKDHM-----KKPVVGFIGGRSAPKGKRMGHAGAIIMGNVGTPESKLRAFAEAGIPV-----ADTIDEI 158 (167)
T ss_dssp ---HHHHHHHHHHHHC-----CSCEEEEESCC------------------CCSHHHHHHHHHHHTCCB-----CSSHHHH
T ss_pred ---HHHHHHHHHHHhc-----CCceEEEeccccccccccccccchhhcCCCCCHHHHHHHHHHCCCEE-----cCCHHHH
Confidence 2445566666543 66666666665443331 23346777888632 2467765
Q ss_pred HHH
Q 026236 230 CKQ 232 (241)
Q Consensus 230 v~~ 232 (241)
+..
T Consensus 159 ~d~ 161 (167)
T d1oi7a2 159 VEL 161 (167)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 7
>d2nu7a2 c.23.4.1 (A:122-287) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=93.53 E-value=0.22 Score=38.67 Aligned_cols=123 Identities=11% Similarity=0.070 Sum_probs=74.9
Q ss_pred CccEEEEecCchhHHHHHHHHHhhccCCCCcceeccCCCCCHHH-HHHHHHHHhhcccCCCCcceEEEEEeccccccccH
Q 026236 87 KGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEE-VLQYARVVIDCATADPDGRKRALLIGGGIANFTDV 165 (241)
Q Consensus 87 dG~Ig~mvnGaGlaMatmD~i~~~~~gg~pANFlD~GG~a~~~~-v~~a~~iil~~~~~~~~~~~i~inI~GGI~n~T~~ 165 (241)
.|+||++.--++++...++..... |--..-+.-+|+.+.... ....+..+.+| +..++ +++ ...++ .+-
T Consensus 23 ~G~iaiiSQSG~~~~~l~~~~~~~--~~g~s~~vs~Gn~~~~~~~~~~~~~~~~dd--~~t~v--i~~-~~e~~---~~~ 92 (166)
T d2nu7a2 23 PGKVGIVSRSGTLTYEAVKQTTDY--GFGQSTCVGIGGDPIPGSNFIDILEMFEKD--PQTEA--IVM-IGEIG---GSA 92 (166)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHT--TCCEEEEEECCSSSSCSSCHHHHHHHHHTC--TTCCE--EEE-EEESS---SSH
T ss_pred CCCEEEEECCchHHHHHHHHhhhh--hcCcceeeccCCCcccchHHHHHHHhhccC--CccEE--EEE-EEecc---cch
Confidence 599999999999999999999888 667778888998876543 45556666665 44443 232 22222 122
Q ss_pred HHHHHHHHHHHHHhhhhhcccceeEEEEecCCChhH----------------HHHHHHHHHHHhCCCeEEcCCCCCHHHH
Q 026236 166 ATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQT----------------GLAKMRALGEELGIPLEVYGPEATMTGI 229 (241)
Q Consensus 166 d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~----------------g~~~l~~~l~~~gi~i~~~~~~~~m~ea 229 (241)
+-+..+.+... .++|||+=..|..+.. .-+.....++++|+ ... ++++|.
T Consensus 93 ----~~~~~~~~~~~-----~~KPvV~~k~Grs~~g~~aa~sht~~~a~~~g~~~~~~aa~r~aGv--i~v---~~~~el 158 (166)
T d2nu7a2 93 ----EEEAAAYIKEH-----VTKPVVGYIAGVTAPKGKRMGHAGAIIAGGKGTADEKFAALEAAGV--KTV---RSLADI 158 (166)
T ss_dssp ----HHHHHHHHHHH-----CCSCEEEEEECTTCCTTCCCSSTTCCCGGGCCCHHHHHHHHHTTTC--EEC---SSGGGH
T ss_pred ----hhHHHHHHHHh-----cCCCeEEEeCCcCCcchhhhhccchhccCCCCCHHHHHHHHHHCCc--eEe---CCHHHH
Confidence 23333444433 3799888666543321 11222456788886 322 366666
Q ss_pred HHHH
Q 026236 230 CKQA 233 (241)
Q Consensus 230 v~~a 233 (241)
+..+
T Consensus 159 ~~~l 162 (166)
T d2nu7a2 159 GEAL 162 (166)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 8
>d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}
Probab=90.29 E-value=1.3 Score=34.50 Aligned_cols=114 Identities=16% Similarity=0.082 Sum_probs=76.4
Q ss_pred CchhHHHHHHHHHhhccCCCCcceeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEeccccccccHHHHHHHHHHH
Q 026236 96 GGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRA 175 (241)
Q Consensus 96 GaGlaMatmD~i~~~~~gg~pANFlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~n~T~~d~iA~GIv~A 175 (241)
=-|..+.. +.+..+ |-+. .+.|...+++++.++..-- ++++ |.|-..- +.--+.++.+++.
T Consensus 51 d~G~~~va-~~l~~~--G~eV---i~lg~~~~~e~iv~aa~~~------~adv--I~iSs~~-----~~~~~~~~~l~~~ 111 (168)
T d7reqa2 51 DRGQKVIA-TAYADL--GFDV---DVGPLFQTPEETARQAVEA------DVHV--VGVSSLA-----GGHLTLVPALRKE 111 (168)
T ss_dssp CHHHHHHH-HHHHHT--TCEE---EECCTTBCHHHHHHHHHHH------TCSE--EEEEECS-----SCHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHhC--Ccce---ecCCCcCcHHHHHHHHHcc------CCCE--EEEecCc-----ccchHHHHHHHHH
Confidence 34667765 577777 5443 5678888999888766532 3443 4554432 2345678899999
Q ss_pred HHHhhhhhcccceeEEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHhhh
Q 026236 176 LREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIMS 239 (241)
Q Consensus 176 ~~~~~~~~~~~~vPiVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~~~~~ 239 (241)
+++.+. .++||+ ..|+-.++- .+.|++.|+. .+|++-+++.+++...++.++.
T Consensus 112 L~~~g~----~~v~Vi--vGG~ip~~d----~~~l~~~Gv~-~iF~pgt~~~e~a~~~~~~~~~ 164 (168)
T d7reqa2 112 LDKLGR----PDILIT--VGGVIPEQD----FDELRKDGAV-EIYTPGTVIPESAISLVKKLRA 164 (168)
T ss_dssp HHHTTC----TTSEEE--EEESCCGGG----HHHHHHHTEE-EEECTTCCHHHHHHHHHHHHHH
T ss_pred HHhcCC----CCeEEE--EeCCCCHHH----HHHHHhCCCC-EEECcCCCHHHHHHHHHHHHHH
Confidence 999863 357776 466433344 3446778976 4789999999998888887654
No 9
>d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]}
Probab=76.96 E-value=9.2 Score=28.05 Aligned_cols=109 Identities=12% Similarity=0.072 Sum_probs=67.5
Q ss_pred HHHHHHhhccCCCCcceeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEeccccccccHHHHHHHHHHHHHHhhhh
Q 026236 103 YADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESK 182 (241)
Q Consensus 103 tmD~i~~~~~gg~pANFlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~n~T~~d~iA~GIv~A~~~~~~~ 182 (241)
.-+++..+ |- +=.++|...+.+.+.++.+-- +++. +.+-+. . +.-....+.+++.+++.+.
T Consensus 23 va~~l~~~--G~---~V~~LG~~~p~e~iv~a~~~~------~~d~--v~lS~~--~---~~~~~~~~~~~~~l~~~~~- 83 (137)
T d1ccwa_ 23 LDHAFTNA--GF---NVVNIGVLSPQELFIKAAIET------KADA--ILVSSL--Y---GQGEIDCKGLRQKCDEAGL- 83 (137)
T ss_dssp HHHHHHHT--TC---EEEEEEEEECHHHHHHHHHHH------TCSE--EEEEEC--S---STHHHHHTTHHHHHHHTTC-
T ss_pred HHHHHHHC--CC---eEEecccccCHHHHHHHHHhc------CCCE--EEEeec--c---ccchHHHHHHHHHHHHhcc-
Confidence 34677777 43 446788888888887765533 3543 343222 2 3445677888888888653
Q ss_pred hcccceeEEEEecCCC--hhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHH
Q 026236 183 LKAARMHIFVRRGGPN--YQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDC 236 (241)
Q Consensus 183 ~~~~~vPiVvRl~Gtn--~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~~ 236 (241)
.++||+| .|.- ..+-.....+-++++|+. .+|++.++.++++....+.
T Consensus 84 ---~~i~iiv--GG~~~~~~~~~~~~~~~l~~~Gv~-~if~~~t~~~~~~~~l~~~ 133 (137)
T d1ccwa_ 84 ---EGILLYV--GGNIVVGKQHWPDVEKRFKDMGYD-RVYAPGTPPEVGIADLKKD 133 (137)
T ss_dssp ---TTCEEEE--EESCSSSSCCHHHHHHHHHHTTCS-EECCTTCCHHHHHHHHHHH
T ss_pred ---CCCEEEE--eCCcCCCccccHHHHHHHHHcCCC-EEECCCCCHHHHHHHHHHH
Confidence 3688775 4432 111111124556888976 5788889999998876554
No 10
>d1guda_ c.93.1.1 (A:) D-allose-binding protein {Escherichia coli [TaxId: 562]}
Probab=64.80 E-value=27 Score=26.67 Aligned_cols=90 Identities=14% Similarity=0.118 Sum_probs=53.0
Q ss_pred cCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEeccccccccHHHHHHHHHHHHHHhhhhhcccceeEEEEecCCChhH
Q 026236 122 YSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQT 201 (241)
Q Consensus 122 ~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~n~T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~ 201 (241)
+-+..+.+..+++++-++.. +++..+++ ...|.+|.|+++|+++.+. ++-..|+-..++ ++
T Consensus 171 ~~~~~~~~~~~~~~~~l~~~---~~~~~ai~----------~~~d~~a~g~~~al~~~g~----~~di~ivg~D~~--~~ 231 (288)
T d1guda_ 171 QPADWDRIKALDVATNVLQR---NPNIKAIY----------CANDTMAMGVAQAVANAGK----TGKVLVVGTDGI--PE 231 (288)
T ss_dssp EECTTCHHHHHHHHHHHHHH---CTTCCEEE----------ESSHHHHHHHHHHHHHTTC----TTTSEEEEESCC--HH
T ss_pred eeccchhhHHHHHHHHhhcc---Ccccceee----------ccCCHHHHHHHHHHHHcCC----CCCeEEEecCCC--HH
Confidence 34556677777776666553 33433222 3568899999999999873 223345545554 44
Q ss_pred HHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHh
Q 026236 202 GLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 237 (241)
Q Consensus 202 g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~~~ 237 (241)
. .+.+++-.+...+.. +..+..+.|++++
T Consensus 232 ~----~~~i~~g~i~~ti~~---~~~~~g~~av~~l 260 (288)
T d1guda_ 232 A----RKMVEAGQMTATVAQ---NPADIGATGLKLM 260 (288)
T ss_dssp H----HHHHHHTSSCEEEEC---CHHHHHHHHHHHH
T ss_pred H----HHHhhcCCceEEEec---CHHHHHHHHHHHH
Confidence 5 344444334333433 7777777777654
No 11
>d7reqb2 c.23.6.1 (B:476-638) Methylmalonyl-CoA mutase beta subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}
Probab=64.29 E-value=23 Score=26.57 Aligned_cols=71 Identities=11% Similarity=0.037 Sum_probs=46.3
Q ss_pred EEEEeccccccccHHHHHHHHHHHHHHhhhhhcccceeEEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHH
Q 026236 152 ALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICK 231 (241)
Q Consensus 152 ~inI~GGI~n~T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~ 231 (241)
++-|.+.- +.-.+.+..+++++|+.+. +..++ ..|....+- .+.+++.|+.-+++ +-+++-+.++
T Consensus 89 vvvicssd---~~y~~~~~~~~~aLk~ag~-----~~~vl--aGg~~~~~d----~~~l~~aGVd~~i~-~G~d~~~~l~ 153 (163)
T d7reqb2 89 VADLCSSA---KVYAQQGLEVAKALKAAGA-----KALYL--SGAFKEFGD----DAAEAEKLIDGRLF-MGMDVVDTLS 153 (163)
T ss_dssp EEEEECCH---HHHHHHHHHHHHHHHHTTC-----SEEEE--ESCGGGGGG----GHHHHHHHCCEEEC-TTCCHHHHHH
T ss_pred EEEEecCc---cchHHHHHHHHHHHHhccc-----ceeEE--EecCCCccc----HHHHHhCCCCeEec-CCCcHHHHHH
Confidence 34466644 3455667889999998763 44443 455544444 34567789986655 4578888888
Q ss_pred HHHHHh
Q 026236 232 QAIDCI 237 (241)
Q Consensus 232 ~av~~~ 237 (241)
...+..
T Consensus 154 ~l~~~l 159 (163)
T d7reqb2 154 STLDIL 159 (163)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 877754
No 12
>d1tjya_ c.93.1.1 (A:) AI-2 receptor LsrB {Salmonella typhi [TaxId: 90370]}
Probab=60.23 E-value=32 Score=26.13 Aligned_cols=90 Identities=14% Similarity=0.015 Sum_probs=53.7
Q ss_pred ccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEeccccccccHHHHHHHHHHHHHHhhhhhcccceeEEEEecCCChh
Q 026236 121 EYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQ 200 (241)
Q Consensus 121 D~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~n~T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~ 200 (241)
...+..+.+.-+++++-+|+. +++..+|+ .-.|.+|.|+++|+++.+. +.+.+|-..|+ .
T Consensus 166 ~~~~~~~~~~~~~~~~~~l~~---~p~~~aI~----------~~nd~~a~ga~~al~~~g~-----~~~~~vg~d~~--~ 225 (316)
T d1tjya_ 166 TQFGYNDATKSLQTAEGIIKA---YPDLDAII----------APDANALPAAAQAAENLKR-----NNLAIVGFSTP--N 225 (316)
T ss_dssp EEECTTCHHHHHHHHHHHHHH---CSSCCEEE----------ECSTTHHHHHHHHHHHTTC-----CSCEEEEBCCH--H
T ss_pred hccchhhhHHHHHHHHHHhhc---CCCCcEEE----------ECCcHHHHHHHHHHHHcCC-----CCcEEEEEcCC--H
Confidence 345566777777777777764 34443333 2457799999999999763 34445544333 4
Q ss_pred HHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHh
Q 026236 201 TGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 237 (241)
Q Consensus 201 ~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~~~ 237 (241)
+. .+.+++-.+...+.. +-......+++++
T Consensus 226 ~~----~~~i~~g~~~~~v~q---~~~~~G~~av~~~ 255 (316)
T d1tjya_ 226 VM----RPYVQRGTVKEFGLW---DVVQQGKISVYVA 255 (316)
T ss_dssp HH----HHHHHHTSCSEEEEC---CHHHHHHHHHHHH
T ss_pred HH----HHHHHhCCCcEEEec---CHHHHHHHHHHHH
Confidence 45 444555556655554 5555555555543
No 13
>d1pcha_ d.94.1.1 (A:) Histidine-containing phosphocarrier protein (HPr) {Mycoplasma capricolum [TaxId: 2095]}
Probab=56.70 E-value=5.8 Score=27.36 Aligned_cols=29 Identities=7% Similarity=0.188 Sum_probs=26.0
Q ss_pred ceeEEEEecCCChhHHHHHHHHHHHHhCC
Q 026236 187 RMHIFVRRGGPNYQTGLAKMRALGEELGI 215 (241)
Q Consensus 187 ~vPiVvRl~Gtn~~~g~~~l~~~l~~~gi 215 (241)
.-.|.|...|++++++++-|.++|.+.|+
T Consensus 57 G~~v~i~~~G~De~~A~~~l~~~l~~~~~ 85 (88)
T d1pcha_ 57 GTEITIQADGNDADQAIQAIKQTMIDTAL 85 (88)
T ss_dssp TCEEEEEEESTTHHHHHHHHHHHHHHTTS
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHcCC
Confidence 45699999999999999999999998875
No 14
>d1jx6a_ c.93.1.1 (A:) Quorum-sensing signal (autoinducer-2) binding protein LuxP {Vibrio harveyi [TaxId: 669]}
Probab=55.64 E-value=45 Score=26.31 Aligned_cols=121 Identities=12% Similarity=-0.013 Sum_probs=65.3
Q ss_pred CccEEEEecCchhHH-----HHHHHHHhhccCCCCcceeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEeccccc
Q 026236 87 KGRIWTMVAGGGASV-----IYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIAN 161 (241)
Q Consensus 87 dG~Ig~mvnGaGlaM-----atmD~i~~~~~gg~pANFlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~n 161 (241)
+++|+++....+.+. ...|.+..+ |+-.-.... -+..+.+.-+++++-+++. +++..+|+
T Consensus 172 ~~~i~~i~~~~~~~~~~R~~gf~~~l~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~l~~---~~~~~ai~--------- 236 (338)
T d1jx6a_ 172 HTYYSVLYFSEGYISDVRGDTFIHQVNRD--NNFELQSAY-YTKATKQSGYDAAKASLAK---HPDVDFIY--------- 236 (338)
T ss_dssp TCEEEEECCSTTHHHHHHHHHHHHHHHHH--HCCEEEEEE-CCCSSHHHHHHHHHHHHHH---CCCCSEEE---------
T ss_pred CeEEEEEecccccccHHHHHHHHHHHHhh--cccccceee-cccchHHHHHHHHHHHhhh---cccccccc---------
Confidence 356766644444332 235788777 432222222 3445777777777777764 23333233
Q ss_pred cccHHHHHHHHHHHHHHhhhhhcccceeEEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHh
Q 026236 162 FTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 237 (241)
Q Consensus 162 ~T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~~~ 237 (241)
+.-|.+|-|+++|+++.+. +.|.||-..|+ .++ .+.+.+--+...+.. +..+..+.|++.+
T Consensus 237 -~~nd~~A~g~~~al~~~G~-----~~~~vig~D~~--~~~----~~~i~~g~~~~tv~q---~~~~~G~~a~~~l 297 (338)
T d1jx6a_ 237 -ACSTDVALGAVDALAELGR-----EDIMINGWGGG--SAE----LDAIQKGDLDITVMR---MNDDTGIAMAEAI 297 (338)
T ss_dssp -ESSHHHHHHHHHHHHHHTC-----TTSEEBCSBCC--HHH----HHHHHHTSSCEEEEE---CTHHHHHHHHHHH
T ss_pred -cccchhHhhhhhhhhhhhc-----ccceeEEecCC--HHH----HHHHhcCCceEEEeC---CHHHHHHHHHHHH
Confidence 2457899999999999984 45555544433 334 222333222223333 5555555555544
No 15
>d1ptfa_ d.94.1.1 (A:) Histidine-containing phosphocarrier protein (HPr) {Enterococcus faecalis [TaxId: 1351]}
Probab=55.04 E-value=6.5 Score=26.87 Aligned_cols=29 Identities=14% Similarity=0.251 Sum_probs=26.0
Q ss_pred ceeEEEEecCCChhHHHHHHHHHHHHhCC
Q 026236 187 RMHIFVRRGGPNYQTGLAKMRALGEELGI 215 (241)
Q Consensus 187 ~vPiVvRl~Gtn~~~g~~~l~~~l~~~gi 215 (241)
.=.|.+...|++++++++-|.+++++-|+
T Consensus 58 G~~i~i~~~G~de~~Al~~l~~~l~~egl 86 (87)
T d1ptfa_ 58 GSDVTITVDGADEAEGMAAIVETLQKEGL 86 (87)
T ss_dssp TCEEEEEEESTTHHHHHHHHHHHHHHTTC
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHcCC
Confidence 46689999999999999999999998776
No 16
>d1pdoa_ c.54.1.1 (A:) IIA domain of mannose transporter, IIA-Man {Escherichia coli [TaxId: 562]}
Probab=54.81 E-value=32 Score=24.36 Aligned_cols=120 Identities=16% Similarity=0.134 Sum_probs=71.6
Q ss_pred EEEEecC-chhHHHHHHHHHhhccCCCCccee--ccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEeccccccccHH
Q 026236 90 IWTMVAG-GGASVIYADTVGDLGYASELGNYA--EYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVA 166 (241)
Q Consensus 90 Ig~mvnG-aGlaMatmD~i~~~~~gg~pANFl--D~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~n~T~~d 166 (241)
||+++.+ +.+|-...+.++.. -|+..|+- ++-=+-+.+.+.+.++-.++.+. ..+...+|.-++||.. |-
T Consensus 2 IgIii~sHG~~A~gl~~s~~~i--~G~~~~i~~i~~~~~~~~~~~~~~~~~~i~~~~-~~~~vliltDl~GGsp----~n 74 (129)
T d1pdoa_ 2 IAIVIGTHGWAAEQLLKTAEML--LGEQENVGWIDFVPGENAETLIEKYNAQLAKLD-TTKGVLFLVDTWGGSP----FN 74 (129)
T ss_dssp CEEEEECSBTHHHHHHHHHHHH--HCCCSSEEEECBCTTCCHHHHHHHHHHHHTTSC-CTTCEEEEESSTTSHH----HH
T ss_pred eEEEEEcChHHHHHHHHHHHHH--hCCCCCeEEEEccCCCCHHHHHHHHHHHHHhcC-CCCCEEEEEeccccch----hH
Confidence 5555443 35777888999988 66666654 44434577888887777776532 2344457778899973 22
Q ss_pred HHHHHHHHHHHHhhhhhcccceeEEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHhhhc
Q 026236 167 TTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIMSA 240 (241)
Q Consensus 167 ~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~~~~~~ 240 (241)
. ..+.+.+.+ ++. -+.|.|..--++.+.. .. ...++++.++.+++.+++.
T Consensus 75 ~----~~~~~~~~~------~v~---visG~Nlpmllea~~~---~~--------~~~~~~el~~~~~~~g~~~ 124 (129)
T d1pdoa_ 75 A----ASRIVVDKE------HYE---VIAGVNIPMLVETLMA---RD--------DDPSFDELVALAVETGREG 124 (129)
T ss_dssp H----HHHHHTTCT------TEE---EEESCCHHHHHHHHHH---HT--------TCCCHHHHHHHHHHHHHHT
T ss_pred H----HHHHhccCC------CEE---EEEcCCHHHHHHHHHh---hh--------cCCCHHHHHHHHHHHHHHH
Confidence 1 122222211 333 3569996666444322 11 1247899999999887753
No 17
>d2nzug1 c.93.1.1 (G:58-332) Glucose-resistance amylase regulator CcpA, C-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=53.90 E-value=41 Score=25.31 Aligned_cols=103 Identities=8% Similarity=0.034 Sum_probs=61.7
Q ss_pred HHHHHhhccCCCCcceeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEeccccccccHHHHHHHHHHHHHHhhhhh
Q 026236 104 ADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKL 183 (241)
Q Consensus 104 mD~i~~~~~gg~pANFlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~n~T~~d~iA~GIv~A~~~~~~~~ 183 (241)
.+....+ |-+.......-+..+.+.-+..++-+++. +++..+++ ...|.+|.|+++++++.+.
T Consensus 144 ~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ai~----------~~~d~~A~g~~~~l~~~g~-- 206 (275)
T d2nzug1 144 KRALTES--GLPVRDSYIVEGDYTYDSGIEAVEKLLEE---DEKPTAIF----------VGTDEMALGVIHGAQDRGL-- 206 (275)
T ss_dssp HHHHHHT--TCCCCGGGEEECCSSHHHHHHHHHHHHTS---SSCCSEEE----------ESSHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHc--CCCCCcceEEeccCCHHHHHHHHHHHHhc---CCCCeEEE----------ecChHHHHHHHHHHhhcCC--
Confidence 3556666 55665555566677777777777766653 23333233 3568899999999999874
Q ss_pred ccccee---EEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHhh
Q 026236 184 KAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 238 (241)
Q Consensus 184 ~~~~vP---iVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~~~~ 238 (241)
++| -|+-..+.. .+ +-...++..+. .+..+..++|++++-
T Consensus 207 ---~ip~di~vig~d~~~--~~--------~~~~p~lttv~--~~~~~~g~~av~~l~ 249 (275)
T d2nzug1 207 ---NVPNDLEIIGFDNTR--LS--------TMVRPQLTSVV--QPMYDIGAVAMRLLT 249 (275)
T ss_dssp ---CTTTTCEEEEEECCG--GG--------GSSSSCCEEEE--CCHHHHHHHHHHHHH
T ss_pred ---CCCccceeeeccCcH--HH--------HhcCCCceEEE--eCHHHHHHHHHHHHH
Confidence 444 344444332 22 11222333322 478888888887653
No 18
>d1h4xa_ c.13.2.1 (A:) Anti-sigma factor antagonist SpoIIaa {Bacillus sphaericus [TaxId: 1421]}
Probab=51.70 E-value=28 Score=23.46 Aligned_cols=83 Identities=12% Similarity=-0.009 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHhhcccCCCCcceEEEEEeccccccccHHHHHHH-HHHHHHHhhhhhcccceeEEEEecCCChhHHHHHH
Q 026236 128 EEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNG-IIRALREKESKLKAARMHIFVRRGGPNYQTGLAKM 206 (241)
Q Consensus 128 ~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~n~T~~d~iA~G-Iv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g~~~l 206 (241)
.+.+++.++-.++. ++++ .++++.-+ + +.+|..+-+ ++...++... .+. .+.+.|.+.+ -
T Consensus 25 a~~~~~~~~~~i~~--~~~~--~vvlD~s~-v---~~iDssgl~~L~~~~~~~~~----~g~--~l~l~~~~~~-v---- 85 (111)
T d1h4xa_ 25 VEQIRAKISTAIFQ--GAVT--TIIWNFER-L---SFMDSSGVGLVLGRMRELEA----VAG--RTILLNPSPT-M---- 85 (111)
T ss_dssp HHHHHHHHHHHHHH--TSCS--EEEEEEEE-E---EEECTHHHHHHHHHHHHHHT----TTC--EEEEESCCHH-H----
T ss_pred HHHHHHHHHHHHhc--CCCc--EEEEEEEC-C---cccCchHHHHHHHHHHHHHH----CCC--EEEEecCCHH-H----
Confidence 45555555544444 3343 34556544 4 466766544 4444444442 233 4457777644 4
Q ss_pred HHHHHHhCCC-eEEcCCCCCHHHHHHH
Q 026236 207 RALGEELGIP-LEVYGPEATMTGICKQ 232 (241)
Q Consensus 207 ~~~l~~~gi~-i~~~~~~~~m~eav~~ 232 (241)
+++++-+|+. +..|. +.++|+++
T Consensus 86 ~~~l~~~gl~~~~~~~---t~~eAl~~ 109 (111)
T d1h4xa_ 86 RKVFQFSGLGPWMMDA---TEEEAIDR 109 (111)
T ss_dssp HHHHHHTTCGGGEECS---CHHHHHHH
T ss_pred HHHHHHcCCCeEEeeC---CHHHHHHh
Confidence 6778888984 55554 78888765
No 19
>d1e8ca2 c.59.1.1 (A:338-497) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]}
Probab=49.90 E-value=43 Score=24.43 Aligned_cols=106 Identities=9% Similarity=-0.026 Sum_probs=60.3
Q ss_pred CCCcceeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEeccccccccHHHHHHHHHHHHHHhhhhhcccceeEEEE
Q 026236 114 SELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVR 193 (241)
Q Consensus 114 g~pANFlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~n~T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvR 193 (241)
+.|.=.+|++.+| +.+...++.+-.. ...+ ++-+||..-+ +=..-...+.+.+.... + -||+-
T Consensus 12 ~~p~VIvDyAHNp--~ai~~l~~~~k~~----~~~~--~~~V~g~~gd--r~~~~~~~~~~~~~~~~------D-~vi~t 74 (160)
T d1e8ca2 12 GKPTVVVDYAHTP--DALEKALQAARLH----CAGK--LWCVFGCGGD--RDKGKRPLMGAIAEEFA------D-VAVVT 74 (160)
T ss_dssp TSCEEEEECCCSH--HHHHHHHHHHHHT----CSSC--EEEEECCCSS--SCSTHHHHHHHHHHHHC------S-EEEEC
T ss_pred CCCEEEEECCCCH--HHHHHHHHHhhhh----cccc--cceeeeehhc--ccchhhhhhhccchhcc------c-hhhhc
Confidence 4578899999975 5677777777443 2223 3334442211 22222334444544432 2 25565
Q ss_pred ecCCChhHHHHHHHHHHHHh--CCCeEEcCCCCCHHHHHHHHHHHhhh
Q 026236 194 RGGPNYQTGLAKMRALGEEL--GIPLEVYGPEATMTGICKQAIDCIMS 239 (241)
Q Consensus 194 l~Gtn~~~g~~~l~~~l~~~--gi~i~~~~~~~~m~eav~~av~~~~~ 239 (241)
-..+..+...++++++++.. .-++.++ .+..+|+++|++.+.+
T Consensus 75 ~~~~~~~~~~~i~~~~~~~~~~~~~v~~i---~d~~~Ai~~Al~~a~~ 119 (160)
T d1e8ca2 75 DDNPRTEEPRAIINDILAGMLDAGHAKVM---EGRAEAVTCAVMQAKE 119 (160)
T ss_dssp CSCCBTSCHHHHHHHHHTTSSCGGGSEEC---SCHHHHHHHHHHHSCT
T ss_pred ccCCccccchhhhhhhccccccccchhhh---hhHHHHHHHHHHhCCC
Confidence 55666666656666665431 1123443 4899999999998864
No 20
>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=48.70 E-value=37 Score=23.40 Aligned_cols=62 Identities=3% Similarity=-0.043 Sum_probs=38.6
Q ss_pred CCcceEEEEEeccccccccHHHHHHHHHHHHHHhhhhhcccceeEEEEecCCChhHHHHHHHHHHHHhCCCeEE
Q 026236 146 PDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEV 219 (241)
Q Consensus 146 ~~~~~i~inI~GGI~n~T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~ 219 (241)
.++|+++|++++.= |.-|-.-...+.+..++.. ++.+|.=-...+.++- ++.+++.++++.+
T Consensus 22 ~~Gk~vll~F~a~w--C~~C~~~~p~l~~~~~~~~------~v~~v~v~~~~~~~~~----~~~~~~~~~~~p~ 83 (134)
T d1lu4a_ 22 LQGKPAVLWFWTPW--CPFCNAEAPSLSQVAAANP------AVTFVGIATRADVGAM----QSFVSKYNLNFTN 83 (134)
T ss_dssp GTTSCEEEEEECTT--CHHHHHHHHHHHHHHHHCT------TSEEEEEECSSCHHHH----HHHHHHHTCCSEE
T ss_pred hCCCEEEEEEeecc--cCCceecchhHHHHhhhhc------cccccccccccchhhh----hhhhhhhccccce
Confidence 45677888888743 3678777776666555432 5665543344455554 6777777876553
No 21
>d3beda1 c.54.1.1 (A:1-132) PTS system, IIA subunit {Enterococcus faecalis [TaxId: 1351]}
Probab=48.03 E-value=43 Score=23.95 Aligned_cols=110 Identities=11% Similarity=0.046 Sum_probs=68.6
Q ss_pred chhHHHHHHHHHhhccCCCCcce--eccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEeccccccccHHHHHHHHHH
Q 026236 97 GGASVIYADTVGDLGYASELGNY--AEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIR 174 (241)
Q Consensus 97 aGlaMatmD~i~~~~~gg~pANF--lD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~n~T~~d~iA~GIv~ 174 (241)
+.+|-...+.+... -|+..|+ +++--+-+.+...+.++-+++.. . .+...||.-++||- .|-. ..+
T Consensus 11 G~~A~gl~~s~~~i--~G~~~~i~~i~l~~~~~~~~~~~~l~~~~~~~-~-~~~vliltDl~GGT----P~N~----a~~ 78 (132)
T d3beda1 11 GRMAEETLASTQMI--VGELADAAIVSMTAEDGLSGTQAKLAAILKEA-G-NVPTLVLADLKGGT----PCNV----AMM 78 (132)
T ss_dssp TTHHHHHHHHHHHH--HCTTCCCEEEEECTTTHHHHHHHHHHHHHHHH-C-SCCEEEEESSTTSH----HHHH----HHH
T ss_pred HHHHHHHHHHHHHH--cCCcCCeEEEEcCCCCCHHHHHHHHHHHHhhC-C-CCCEEEEEecccCC----hhHH----HHH
Confidence 56888888888877 6666665 66666666777777777776652 2 23334666789996 3432 222
Q ss_pred HHHHhhhhhcccceeEEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHhhhc
Q 026236 175 ALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIMSA 240 (241)
Q Consensus 175 A~~~~~~~~~~~~vPiVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~~~~~~ 240 (241)
.+++.+ ++. -+.|-|.--- -+.+.. .++++++.++.+++.+++.
T Consensus 79 ~~~~~~------~v~---visG~NLpml----Le~~~~---------~~~~~~el~~~~~~~g~~~ 122 (132)
T d3beda1 79 AMGTYP------QLR---VVAGLNLAMA----IEAAVS---------PVENVDELAAYLTQIGQSA 122 (132)
T ss_dssp HTTTCT------TEE---EEESCCHHHH----HHHHHC---------CCCCHHHHHHHHHHHHHHT
T ss_pred HHhcCC------CEE---EEECCCHHHH----HHHHHc---------ccCCHHHHHHHHHHHHHHh
Confidence 332221 333 3789995544 343321 2358999999999988763
No 22
>d2hpra_ d.94.1.1 (A:) Histidine-containing phosphocarrier protein (HPr) {Bacillus subtilis [TaxId: 1423]}
Probab=47.22 E-value=10 Score=25.91 Aligned_cols=29 Identities=14% Similarity=0.201 Sum_probs=25.5
Q ss_pred ceeEEEEecCCChhHHHHHHHHHHHHhCC
Q 026236 187 RMHIFVRRGGPNYQTGLAKMRALGEELGI 215 (241)
Q Consensus 187 ~vPiVvRl~Gtn~~~g~~~l~~~l~~~gi 215 (241)
.-.|.+...|++++++++.|.++++..|+
T Consensus 57 G~~v~i~~~G~De~~A~~~l~~~l~~~g~ 85 (87)
T d2hpra_ 57 GAEITISASGADENDALNALEETMKCEGL 85 (87)
T ss_dssp TCEEEEEEESTTHHHHHHHHHHHHHHHTS
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHcCC
Confidence 45799999999999999999999987664
No 23
>d1ozha1 c.31.1.3 (A:188-366) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]}
Probab=46.53 E-value=13 Score=27.78 Aligned_cols=45 Identities=18% Similarity=0.328 Sum_probs=27.2
Q ss_pred CCCCHHHHHHHHHHHhhcccCCCCcceEEEEEeccccccccHHHHHHHHHHHHHHh
Q 026236 124 GAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREK 179 (241)
Q Consensus 124 G~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~n~T~~d~iA~GIv~A~~~~ 179 (241)
|+++.+++.++.++|.+. .+. +|.+++|..+ .++. +-+++..+++
T Consensus 3 g~a~~~~i~~~~~~L~~A----krP---vii~G~g~~~-~~a~---~~l~~lae~~ 47 (179)
T d1ozha1 3 GAAPDDAIDQVAKLIAQA----KNP---IFLLGLMASQ-PENS---KALRRLLETS 47 (179)
T ss_dssp CCSCHHHHHHHHHHHHHC----SSE---EEEECGGGGS-GGGH---HHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhC----CCE---EEEEchhhCh-hhHH---HHHHHHHHhc
Confidence 566779999999999775 332 4555666631 2222 3455555554
No 24
>d2ji7a1 c.31.1.3 (A:195-369) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]}
Probab=43.43 E-value=13 Score=27.67 Aligned_cols=53 Identities=17% Similarity=0.260 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHHHhhcccCCCCcceEEEEEeccccccccHHHHHHHHHHHHHHhhhhhcccceeEEEEecC
Q 026236 126 PNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGG 196 (241)
Q Consensus 126 a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~n~T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~G 196 (241)
|+++++.++.++|.+- .+. +|.++||+.+ ....+-+.+..+.+ .+||+.=..|
T Consensus 4 P~~~~l~~a~~~L~~A----~rP---vii~G~g~~~----~~a~~~l~~lae~~-------~iPv~~t~~~ 56 (175)
T d2ji7a1 4 PAEDAIARAADLIKNA----KRP---VIMLGKGAAY----AQCDDEIRALVEET-------GIPFLPMGMA 56 (175)
T ss_dssp CCHHHHHHHHHHHHTC----SSC---EEEECHHHHH----TTCHHHHHHHHHHH-------TCCEEECTTT
T ss_pred cCHHHHHHHHHHHHhC----CCE---EEEECCCccc----cccHHHHHHHhhhc-------eeeeeccccc
Confidence 7899999999999774 333 5566777631 11223344444443 5888764444
No 25
>d1ka5a_ d.94.1.1 (A:) Histidine-containing phosphocarrier protein (HPr) {Staphylococcus aureus [TaxId: 1280]}
Probab=42.56 E-value=13 Score=25.29 Aligned_cols=29 Identities=10% Similarity=0.218 Sum_probs=25.7
Q ss_pred ceeEEEEecCCChhHHHHHHHHHHHHhCC
Q 026236 187 RMHIFVRRGGPNYQTGLAKMRALGEELGI 215 (241)
Q Consensus 187 ~vPiVvRl~Gtn~~~g~~~l~~~l~~~gi 215 (241)
.-.|.+...|++++++++-|.+++++-|+
T Consensus 58 G~~v~i~~~G~de~~Al~~l~~~l~~egl 86 (88)
T d1ka5a_ 58 DAEITIYADGSDESDAIQAISDVLSKEGL 86 (88)
T ss_dssp TCEEEEEEESSSHHHHHHHHHHHHHHHTS
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHhcCC
Confidence 45799999999999999999999988775
No 26
>d1jx6a_ c.93.1.1 (A:) Quorum-sensing signal (autoinducer-2) binding protein LuxP {Vibrio harveyi [TaxId: 669]}
Probab=41.47 E-value=75 Score=24.83 Aligned_cols=98 Identities=8% Similarity=-0.062 Sum_probs=55.9
Q ss_pred CCHHHHHHHHHHHhhcccCCCCcceEEEEEeccccccccHHHHHHHHHHHHHHhhhhhcccceeEEEEe-cCCChhHHHH
Q 026236 126 PNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRR-GGPNYQTGLA 204 (241)
Q Consensus 126 a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~n~T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl-~Gtn~~~g~~ 204 (241)
.+.+-.+.+.+.+.+... .+.+ ++.+.|.. +. ..++-.+|+.+++++.+ .+.++... .....++|.+
T Consensus 153 D~~~~g~~a~~~L~~~g~--~~~~--i~~i~~~~-~~-~~~~R~~gf~~~l~~~~------~~~~~~~~~~~~~~~~~~~ 220 (338)
T d1jx6a_ 153 DHAEGSRELATEFGKFFP--KHTY--YSVLYFSE-GY-ISDVRGDTFIHQVNRDN------NFELQSAYYTKATKQSGYD 220 (338)
T ss_dssp CHHHHHHHHHHHHHHHSC--TTCE--EEEECCST-TH-HHHHHHHHHHHHHHHHH------CCEEEEEECCCSSHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCC--CCeE--EEEEeccc-cc-ccHHHHHHHHHHHHhhc------ccccceeecccchHHHHHH
Confidence 445667778888887622 2332 33344433 22 34456789999999876 34444444 4566788888
Q ss_pred HHHHHHHHhCCCeEEcCCCCCHHHHHHHHHH
Q 026236 205 KMRALGEELGIPLEVYGPEATMTGICKQAID 235 (241)
Q Consensus 205 ~l~~~l~~~gi~i~~~~~~~~m~eav~~av~ 235 (241)
.++.+|+...-+--+|...+.|.-.+-+|++
T Consensus 221 ~~~~~l~~~~~~~ai~~~nd~~A~g~~~al~ 251 (338)
T d1jx6a_ 221 AAKASLAKHPDVDFIYACSTDVALGAVDALA 251 (338)
T ss_dssp HHHHHHHHCCCCSEEEESSHHHHHHHHHHHH
T ss_pred HHHHHhhhcccccccccccchhHhhhhhhhh
Confidence 8888888755332223222334434444444
No 27
>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=40.97 E-value=16 Score=26.76 Aligned_cols=67 Identities=12% Similarity=0.162 Sum_probs=40.7
Q ss_pred cccHHHHHHHHHHHHHHhhhhhcccceeEEEEecCCChhHHHHHHHHHH-HHhCCCeEEcCCCCCHHHHHHHHHHHhhhc
Q 026236 162 FTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALG-EELGIPLEVYGPEATMTGICKQAIDCIMSA 240 (241)
Q Consensus 162 ~T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g~~~l~~~l-~~~gi~i~~~~~~~~m~eav~~av~~~~~~ 240 (241)
||.-+ .....++.+.+. ++|+|+--+|-..+ -++.|++.+ +..++|+.. ..+|.=.|..+..+.+.+
T Consensus 51 FS~p~-~~~~~~~~~~~~-------~~~~ViGTTG~~~~-~~~~l~~~~~~~~~ipil~---apNfSlGvnll~~l~~~a 118 (135)
T d1yl7a1 51 FTHPD-VVMGNLEFLIDN-------GIHAVVGTTGFTAE-RFQQVESWLVAKPNTSVLI---APNFTSFVPGVLLAVRRI 118 (135)
T ss_dssp CCCTT-THHHHHHHHHHT-------TCEEEECCCCCCHH-HHHHHHHHHHSCTTCEEEE---CSCCGGGHHHHHHHHHHG
T ss_pred cccHH-HHHHHHHHHHhc-------CCCEEEeccccchh-HHHHHHHHHHhcCCCCEEE---cCCccHHHHHHHHHHHHH
Confidence 35444 334445555544 59999988887744 445555543 345788764 358887776666655443
No 28
>d3by5a1 c.151.1.1 (A:8-130) Cobalamin biosynthesis protein CobE {Agrobacterium tumefaciens [TaxId: 358]}
Probab=39.81 E-value=38 Score=24.25 Aligned_cols=51 Identities=14% Similarity=0.145 Sum_probs=37.3
Q ss_pred ccHHHHHHHHHHHHHHhhhhhcccceeEEEEecCCChhHHHHHHHHHHHHhCCCeEEcC
Q 026236 163 TDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYG 221 (241)
Q Consensus 163 T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~ 221 (241)
+..+++.+.|-+++++.+. .+--+.-+.--..|.|+ .++-+.+|+|+++|.
T Consensus 12 ~~~~~i~~ai~~~l~~~~l-----si~~iatid~K~dE~gl---~~~a~~l~~pl~~~~ 62 (123)
T d3by5a1 12 AASDAIIAAVRAAERAFGV-----TVDYLATAPLKADEAGL---AEAAKGLSLSLEIVA 62 (123)
T ss_dssp CCHHHHHHHHHHHHHHHTC-----CCCEEEESSCCSCCHHH---HHHHHHTTCCEEECC
T ss_pred CCHHHHHHHHHHHHHHcCC-----ChhhcccHHHhcCCHHH---HHHHHHhCCCeEEeC
Confidence 4788888888888888763 44455556666666774 677778899998885
No 29
>d1oaoa_ e.26.1.2 (A:) Bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) beta (CODH) subunit {Moorella thermoacetica [TaxId: 1525]}
Probab=39.50 E-value=41 Score=31.09 Aligned_cols=60 Identities=10% Similarity=0.105 Sum_probs=43.7
Q ss_pred EEEEeccccccccHHHHHHHHHHHHHHhhhhhcccceeEEEEecCCChhHHHHHHHHHHHHhCCCeE
Q 026236 152 ALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLE 218 (241)
Q Consensus 152 ~inI~GGI~n~T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g~~~l~~~l~~~gi~i~ 218 (241)
++|+ |..+++.|.-.+|..+.+++..-- .++|++.-..+--+|+|+.++--. -.+|||++
T Consensus 543 VL~~-GsCvD~~r~~~ia~aLA~~lg~di-----n~LP~~~~apew~eqKAvai~~~~-lalGI~~~ 602 (673)
T d1oaoa_ 543 VFHM-GSCVDNSRAVDLLMAMANDLGVDT-----PKVPFVASAPEAMSGKAAAIGTWW-VSLGVPTH 602 (673)
T ss_dssp EEEE-ESGGGHHHHHHHHHHHHHHHTSCG-----GGSCEEEEETTCCSHHHHHHHHHH-HHTTCEEE
T ss_pred eeec-cccHhHHHHHHHHHHHHHHhCCCc-----ccCCceEecchHHHHHHHHHHHHH-HHcCCeEE
Confidence 5666 555555677777777777775432 389999999999999998777554 34798876
No 30
>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}
Probab=38.72 E-value=22 Score=24.76 Aligned_cols=55 Identities=11% Similarity=0.047 Sum_probs=36.7
Q ss_pred EEEEEeccccccccHHHHHHHHHHHHHHhhhhhcccceeEEEEecC---CChhHHHHHHHHHHHHhCCCeE
Q 026236 151 RALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGG---PNYQTGLAKMRALGEELGIPLE 218 (241)
Q Consensus 151 i~inI~GGI~n~T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~G---tn~~~g~~~l~~~l~~~gi~i~ 218 (241)
.++.|+||. ++-=+..++..++. ++-++-|-.. .-..+.-..|.+.+++.|++++
T Consensus 27 ~~viiG~G~--------iglE~A~~~~~~G~-----~Vtvi~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~ 84 (123)
T d1dxla2 27 KLVVIGAGY--------IGLEMGSVWGRIGS-----EVTVVEFASEIVPTMDAEIRKQFQRSLEKQGMKFK 84 (123)
T ss_dssp EEEESCCSH--------HHHHHHHHHHHHTC-----EEEEECSSSSSSTTSCHHHHHHHHHHHHHSSCCEE
T ss_pred eEEEEccch--------HHHHHHHHHHhcCC-----eEEEEEEccccCchhhhcchhhhhhhhhcccceEE
Confidence 377889998 33335567777774 7878776332 2224455666788899999887
No 31
>d2dria_ c.93.1.1 (A:) D-ribose-binding protein {Escherichia coli, strain k-12 [TaxId: 562]}
Probab=38.25 E-value=70 Score=23.56 Aligned_cols=61 Identities=13% Similarity=0.021 Sum_probs=39.7
Q ss_pred cHHHHHHHHHHHHHHhhhhhcccceeEEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHhh
Q 026236 164 DVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 238 (241)
Q Consensus 164 ~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~~~~ 238 (241)
..|.+|.|+++|+++.++ +.|.++-..+++.-.- .. ..|-+..... .+..+..++|++++.
T Consensus 189 ~~d~~a~g~~~al~~~g~-----~di~iig~d~~~~~~~------~i-~~g~~~~ti~--~~~~~~G~~av~~l~ 249 (271)
T d2dria_ 189 QNDEMALGALRALQTAGK-----SDVMVVGFDGTPDGEK------AV-NDGKLAATIA--QLPDQIGAKGVETAD 249 (271)
T ss_dssp SSHHHHHHHHHHHHHHTC-----CSCEEEEEECCHHHHH------HH-HTTSSCEEEE--CCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCC-----CCCceEECcCCHHHHH------HH-hcCCceEEEe--cCHHHHHHHHHHHHH
Confidence 568899999999999874 6677887877763222 11 2243322222 477787777777654
No 32
>d1vc1a_ c.13.2.1 (A:) Anti-sigma factor antagonist SpoIIaa {Thermotoga maritima [TaxId: 2336]}
Probab=37.64 E-value=46 Score=22.01 Aligned_cols=70 Identities=11% Similarity=0.030 Sum_probs=39.1
Q ss_pred CHHHHHHHHHHHhhcccCCCCcceEEEEEeccccccccHHHHHHHHHH-HHHHhhhhhcccceeEEEEecCCChhHHHHH
Q 026236 127 NEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIR-ALREKESKLKAARMHIFVRRGGPNYQTGLAK 205 (241)
Q Consensus 127 ~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~n~T~~d~iA~GIv~-A~~~~~~~~~~~~vPiVvRl~Gtn~~~g~~~ 205 (241)
+.+.+.+.+.-.++. +.+ +.++++. .+. +-+|-.+-++.. ..++.. +.-.-+++.|.+.+ -
T Consensus 27 ~~~~~~~~l~~~~~~--~~~--~~vvid~-~~v---~~iDssg~~~l~~~~~~~~------~~~~~l~l~~~~~~-v--- 88 (110)
T d1vc1a_ 27 NSSELKEQLRNFIST--TSK--KKIVLDL-SSV---SYMDSAGLGTLVVILKDAK------INGKEFILSSLKES-I--- 88 (110)
T ss_dssp THHHHHHHHHHHHHH--CCC--SEEEEEE-EEC---CCBCHHHHHHHHHHHHHHH------HTTCEEEEESCCHH-H---
T ss_pred HHHHHHHHHHHHHhc--CCC--CEEEEEE-ECC---CccCHHHHHHHHHHHHHHH------hCCCEEEEEeCCHH-H---
Confidence 566676666655554 233 3356675 444 466666555544 444433 22234578888744 3
Q ss_pred HHHHHHHhCC
Q 026236 206 MRALGEELGI 215 (241)
Q Consensus 206 l~~~l~~~gi 215 (241)
+++++.+|+
T Consensus 89 -~~~l~~~gl 97 (110)
T d1vc1a_ 89 -SRILKLTHL 97 (110)
T ss_dssp -HHHHHHHTG
T ss_pred -HHHHHHcCC
Confidence 677777775
No 33
>d1th8b_ c.13.2.1 (B:) Anti-sigma factor antagonist SpoIIaa {Bacillus stearothermophilus [TaxId: 1422]}
Probab=37.26 E-value=53 Score=21.82 Aligned_cols=82 Identities=15% Similarity=0.065 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhhcccCCCCcceEEEEEeccccccccHHHHHHH-HHHHHHHhhhhhcccceeEEEEecCCChhHHHHHH
Q 026236 128 EEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNG-IIRALREKESKLKAARMHIFVRRGGPNYQTGLAKM 206 (241)
Q Consensus 128 ~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~n~T~~d~iA~G-Iv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g~~~l 206 (241)
.+.+.+.+.-.+.. +.. +.++++.-+ + +..|..+-+ +++..++.. +....+.+.|.+.+ -
T Consensus 26 ~~~~~~~l~~~~~~--~~~--~~iilDls~-v---~~iDssg~~~L~~~~~~~~------~~g~~l~l~~~~~~-v---- 86 (115)
T d1th8b_ 26 AEELREQVTDVLEN--RAI--RHIVLNLGQ-L---TFMDSSGLGVILGRYKQIK------NVGGQMVVCAVSPA-V---- 86 (115)
T ss_dssp HHHHHHHHHHHHHS--SCC--CEEEEEEEE-E---EEECHHHHHHHHHHHHHHH------HTTCCEEEESCCHH-H----
T ss_pred HHHHHHHHHHHHhc--CCC--CEEEEEEEC-C---CCCCHHHHHHHHHHHHHHH------hCCCEEEEEECCHH-H----
Confidence 34455555434333 223 345667544 4 355555443 344444443 23455677888743 4
Q ss_pred HHHHHHhCCC--eEEcCCCCCHHHHHH
Q 026236 207 RALGEELGIP--LEVYGPEATMTGICK 231 (241)
Q Consensus 207 ~~~l~~~gi~--i~~~~~~~~m~eav~ 231 (241)
+++++.+|+. +.+|. +.++|++
T Consensus 87 ~~~l~~~gl~~~~~i~~---~~~~Al~ 110 (115)
T d1th8b_ 87 KRLFDMSGLFKIIRVEA---DEQFALQ 110 (115)
T ss_dssp HHHHHHHTGGGTSEEES---SHHHHHH
T ss_pred HHHHHHcCCCceeEEeC---CHHHHHH
Confidence 5666777762 34554 7777765
No 34
>d2a21a1 c.1.10.4 (A:1002-1264) 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8P synthase) {Aquifex aeolicus [TaxId: 63363]}
Probab=33.06 E-value=56 Score=25.98 Aligned_cols=48 Identities=17% Similarity=0.403 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhhhhhcccceeEEEEec-------------CCChhHHHHHHHHHHHHhCCCeE
Q 026236 169 FNGIIRALREKESKLKAARMHIFVRRG-------------GPNYQTGLAKMRALGEELGIPLE 218 (241)
Q Consensus 169 A~GIv~A~~~~~~~~~~~~vPiVvRl~-------------Gtn~~~g~~~l~~~l~~~gi~i~ 218 (241)
+.-+.+.+++...... +...++|.. |...+++++.|+++.++.|+|+.
T Consensus 18 ~~~~A~~lk~~~~~~~--~~~~i~r~~~~k~~RTs~~~f~g~G~~~~l~~l~~~~~~~glpi~ 78 (263)
T d2a21a1 18 LLKVGEEIKRLSEKFK--EVEFVFKSSFDKANRSSIHSFRGHGLEYGVKALRKVKEEFGLKIT 78 (263)
T ss_dssp HHHHHHHHHHHHHHCT--TEEEEEECBSCCTTCSSTTSCCCSCHHHHHHHHHHHHHHHCCEEE
T ss_pred HHHHHHHHHHHHHHhC--cCceEEeccccCCCCCCccccCCCCchhHHHHHHHHHHhhCCcee
Confidence 3344444444443211 477788774 44558899999999999999975
No 35
>d1vlja_ e.22.1.2 (A:) NADH-dependent butanol dehydrogenase A (TM0820) {Thermotoga maritima [TaxId: 2336]}
Probab=32.74 E-value=73 Score=26.41 Aligned_cols=63 Identities=16% Similarity=0.147 Sum_probs=45.7
Q ss_pred HHHHHHHHhhccCCCCcceeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEeccccccccHHHHHHHHHHHH
Q 026236 101 VIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRAL 176 (241)
Q Consensus 101 MatmD~i~~~~~gg~pANFlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~n~T~~d~iA~GIv~A~ 176 (241)
--..+.+..+ |-+..-|-|+.+.|+.+.+.++.+.+... +++. +|=++||- +-.+|++|.-.+
T Consensus 53 ~~l~~~L~~~--gi~~~~f~~v~~~pt~~~v~~~~~~~~~~---~~D~---IIavGGGs-----~iD~aK~ia~~~ 115 (398)
T d1vlja_ 53 DQVVDSLKKH--GIEWVEVSGVKPNPVLSKVHEAVEVAKKE---KVEA---VLGVGGGS-----VVDSAKAVAAGA 115 (398)
T ss_dssp HHHHHHHHHT--TCEEEEECCCCSSCBHHHHHHHHHHHHHT---TCSE---EEEEESHH-----HHHHHHHHHHHT
T ss_pred HHHHHHHHhc--CCeEEEEcCccCCCCHHHHHHHhhhcccc---cCce---EEecCCcc-----hhhHHHHHHHHh
Confidence 3355666777 55777787899999999999999988763 4543 67888875 455788775544
No 36
>d3b48a1 c.54.1.2 (A:1-132) Uncharacterized protein EF1359 {Enterococcus faecalis [TaxId: 1351]}
Probab=32.67 E-value=61 Score=22.84 Aligned_cols=116 Identities=11% Similarity=0.064 Sum_probs=66.3
Q ss_pred EecCchhHHHHHHHHHhhccCCCCcceeccCCCC------CHHHHHHHHHHHhhcccCCCCcceEEEEEeccccccccHH
Q 026236 93 MVAGGGASVIYADTVGDLGYASELGNYAEYSGAP------NEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVA 166 (241)
Q Consensus 93 mvnGaGlaMatmD~i~~~~~gg~pANFlD~GG~a------~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~n~T~~d 166 (241)
+.=|.++|=...+.+++.- ||++-+-.-+++.+ ..+++.++++-+ +..+...+|.-+|||.. +-
T Consensus 8 vsHG~~lA~gl~~~~~~m~-~~~~~~i~~~~~~~~~~~~~~~~ki~~~i~~~-----~~~~gvlvl~Dl~ggsp----~~ 77 (132)
T d3b48a1 8 VSHSKMITDGIKEMIEQMN-ASEEITIHSLGGTSDGSLGSDPMKIIDTINEA-----DSDREFLIFADLGSAVL----SS 77 (132)
T ss_dssp ECSCHHHHHHHHHHHHTTC---CCCEEEECCSCSSSSSSCCHHHHHHHHHHS-----CSSCEEEEEECSHHHHH----HH
T ss_pred EeCCHHHHHHHHHHHHHHh-CCCCccEEEEecCCCCCccchHHHHHHHHHhc-----CCCCcEEEEEeCCCCch----hH
Confidence 3445568888889987531 67776655444433 346777766654 22344457788899873 21
Q ss_pred HHHHHHHHHHHHhhhhhcccceeEEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHhhh
Q 026236 167 TTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIMS 239 (241)
Q Consensus 167 ~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~~~~~ 239 (241)
+.+...+.+. +..+|.-+.+|+...+++.... .. ...+++++++.|++..++
T Consensus 78 ---~~~~~~~~~~-------~~~~I~gvN~p~l~~al~~~~~----~~-------~~~~l~ei~~~a~~agk~ 129 (132)
T d3b48a1 78 ---ELAFDMLEED-------QQKHYHLVDAPLVEGAFASAIT----AG-------VSDDLTQILAEAQNAGKK 129 (132)
T ss_dssp ---HHHHHHSCHH-------HHTTEEECCSCHHHHHHHHHHH----HC--------CCCHHHHHHHHHTCCCC
T ss_pred ---HHHHHHhcCc-------cceEEEeechhHHHHHHHHHHH----Hh-------cCCCHHHHHHHHHHHHhc
Confidence 2223333322 3445677888887777433222 11 125899999988875543
No 37
>d1i96v_ d.68.1.1 (V:) Translation initiation factor IF3, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=32.51 E-value=35 Score=22.98 Aligned_cols=45 Identities=22% Similarity=0.299 Sum_probs=32.9
Q ss_pred cHHHHHHHHHHHHHHhhhhhcccceeEEEEecCCC---hhHHHHHHHHHHHHhC
Q 026236 164 DVATTFNGIIRALREKESKLKAARMHIFVRRGGPN---YQTGLAKMRALGEELG 214 (241)
Q Consensus 164 ~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn---~~~g~~~l~~~l~~~g 214 (241)
+-+.=++-+.+++++-. +|.++||+.|.. .+.|.++|.++.+..+
T Consensus 15 Dl~~K~k~a~~FL~~G~------kVKv~v~frGRe~~~~e~g~~~l~~~~~~l~ 62 (86)
T d1i96v_ 15 DYQTKLGHIKRFLQEGH------KVKVTIMFRGREVAHPELGERILNRVTEDLK 62 (86)
T ss_pred hHHHHHHHHHHHHhcCC------eEEEEEEEecccccCHHHHHHHHHHHHHHhh
Confidence 44444666667776643 799999999865 8889888888877654
No 38
>d1tiga_ d.68.1.1 (A:) Translation initiation factor IF3, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=31.45 E-value=31 Score=23.36 Aligned_cols=43 Identities=16% Similarity=0.252 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHhhhhhcccceeEEEEecCC---ChhHHHHHHHHHHHHhC
Q 026236 166 ATTFNGIIRALREKESKLKAARMHIFVRRGGP---NYQTGLAKMRALGEELG 214 (241)
Q Consensus 166 d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gt---n~~~g~~~l~~~l~~~g 214 (241)
+.=++-+.+++++-. +|.+.||+.|. +.+.|.++|.++.+++.
T Consensus 18 ~~K~k~a~~FL~~G~------kVKv~v~frGRe~~~~e~g~~~l~~~~~~l~ 63 (88)
T d1tiga_ 18 NTKLRNARKFLEKGD------KVKATIRFKGRAITHKEIGQRVLDRLSEACA 63 (88)
T ss_dssp HHHHHHHHHHHHTTC------EEEEEEECCSCCTTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCC------eEEEEEEEcCccccCHHHHHHHHHHHHHHhh
Confidence 333566666666543 79999999997 56789888888877764
No 39
>d2djia1 c.31.1.3 (A:187-363) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]}
Probab=31.36 E-value=41 Score=24.69 Aligned_cols=51 Identities=8% Similarity=0.154 Sum_probs=32.7
Q ss_pred CCHHHHHHHHHHHhhcccCCCCcceEEEEEeccccccccHHHHHHHHHHHHHHhhhhhcccceeEEEEecC
Q 026236 126 PNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGG 196 (241)
Q Consensus 126 a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~n~T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~G 196 (241)
|+.+++.++.++|.+- .+. +|.++||+. ++. ..+.+..+.+ .+||+.-..|
T Consensus 6 P~~~~i~~~~~~l~~A----k~P---vii~G~g~~---~a~---~~l~~lae~l-------~~Pv~~t~~~ 56 (177)
T d2djia1 6 PAAQDIDAAVELLNNS----KRP---VIYAGIGTM---GHG---PAVQELARKI-------KAPVITTGKN 56 (177)
T ss_dssp CCHHHHHHHHHHHHTC----SSE---EEEECGGGT---TCH---HHHHHHHHHH-------TCCEEECTTC
T ss_pred cCHHHHHHHHHHHHhC----CCE---EEEECcChh---hHH---HHHHHhhhcc-------ceEEEecccc
Confidence 6889999999999664 332 566677885 332 2344444444 5888775444
No 40
>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}
Probab=30.24 E-value=45 Score=22.90 Aligned_cols=54 Identities=15% Similarity=0.204 Sum_probs=35.2
Q ss_pred EEEEeccccccccHHHHHHHHHHHHHHhhhhhcccceeEEEEecC--CC-hhHHHHHHHHHHHHhCCCeE
Q 026236 152 ALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGG--PN-YQTGLAKMRALGEELGIPLE 218 (241)
Q Consensus 152 ~inI~GGI~n~T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~G--tn-~~~g~~~l~~~l~~~gi~i~ 218 (241)
++.|+||. +-|. +..++...+ .++-+|.|..- +. ..+.-+.+++.+++.|+.++
T Consensus 25 v~IiGgG~---iG~E-----~A~~l~~~g-----~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~gV~i~ 81 (117)
T d1onfa2 25 IGIVGSGY---IAVE-----LINVIKRLG-----IDSYIFARGNRILRKFDESVINVLENDMKKNNINIV 81 (117)
T ss_dssp EEEECCSH---HHHH-----HHHHHHTTT-----CEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEE
T ss_pred EEEECCch---HHHH-----HHHHHHhcc-----ccceeeehhccccccccHHHHHHHHHHHHhCCCEEE
Confidence 67889998 3333 445666666 37888887331 22 34444666788888999876
No 41
>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=30.05 E-value=75 Score=21.42 Aligned_cols=59 Identities=5% Similarity=-0.068 Sum_probs=35.7
Q ss_pred CCcceEEEEEeccccccccHHHHHHHHHHHHHHhhhhhcccceeEEEEecCCChhHHHHHHHHHHHHhCCC
Q 026236 146 PDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIP 216 (241)
Q Consensus 146 ~~~~~i~inI~GGI~n~T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g~~~l~~~l~~~gi~ 216 (241)
.++|.++|++++.= |..|-.-+.-+.+..++.. ++-+|+-......+.. ++.+++.+++
T Consensus 23 ~~Gk~vll~fwa~w--C~~C~~~~p~l~~l~~~~~------~~~~v~v~~~d~~~~~----~~~~~~~~~~ 81 (134)
T d1zzoa1 23 LLGKPAVLWFWAPW--CPTCQGEAPVVGQVAASHP------EVTFVGVAGLDQVPAM----QEFVNKYPVK 81 (134)
T ss_dssp GTTSCEEEEEECTT--CHHHHHHHHHHHHHHHHCT------TSEEEEEECSSCHHHH----HHHHHHTTCT
T ss_pred hCCCEEEEEecccc--cCcccccchhhHHHHhhhc------ccccccccccccchhH----HHHHHhcCCc
Confidence 45677899999754 3788777776666666553 3444443333444444 5666666653
No 42
>d2dfaa1 c.6.2.5 (A:1-250) Hypothetical protein TTHB195 {Thermus thermophilus [TaxId: 274]}
Probab=28.60 E-value=69 Score=25.67 Aligned_cols=141 Identities=11% Similarity=0.118 Sum_probs=76.2
Q ss_pred cceEEecCCccEEEEec-CchhHH-HHHHHHHhhc--cCCC-----CcceeccCCCCCHHHHHHH-------HHHHhhcc
Q 026236 79 LKFTVLNPKGRIWTMVA-GGGASV-IYADTVGDLG--YASE-----LGNYAEYSGAPNEEEVLQY-------ARVVIDCA 142 (241)
Q Consensus 79 l~yv~L~~dG~Ig~mvn-GaGlaM-atmD~i~~~~--~gg~-----pANFlD~GG~a~~~~v~~a-------~~iil~~~ 142 (241)
+.|+. .-||+|=.= |--.+| .|.-+-+.++ +|.. ..||-=-.=..+.+.++.. +.-+.+.
T Consensus 25 m~~i~---saNIACG~HaGD~~~m~~tv~lA~~~~V~IGAHPsypD~~gFGRr~~~~s~~el~~~i~~Qi~al~~~a~~- 100 (250)
T d2dfaa1 25 FPLVS---SANLACGFHGGSPGRILEAVRLAKAHGVAVGAHPGFPDLVGFGRREMALSPEEVYADVLYQIGALSAFLKA- 100 (250)
T ss_dssp TTTCS---EEEEECSSSSCCHHHHHHHHHHHHHTTCEEEEECCCSCTTTTTCSCCCCCHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HhHhh---hHHHhcCcccCCHHHHHHHHHHHHHcCCccccCCCCcchhhcCCCcCCCCHHHHHHHHHHHHHHHHHHHHH-
Confidence 45665 478887532 333455 3455555553 3333 4455444445566664432 3333332
Q ss_pred cCCCCcceEEEEEecccccc-ccHHHHHHHHHHHHHHhhhhhcccceeEEEEecCCChhHHHHHHHHHHHHhCCCeE--E
Q 026236 143 TADPDGRKRALLIGGGIANF-TDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLE--V 219 (241)
Q Consensus 143 ~~~~~~~~i~inI~GGI~n~-T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g~~~l~~~l~~~gi~i~--~ 219 (241)
.+.+. -.|=-.|-.=|. .+=.++|+.|+++++++.+ ++|+++ +.|+..+ +..++.|+++. +
T Consensus 101 -~g~~l--~hVKpHGALYn~~~~d~~lA~~i~~ai~~~~~-----~l~l~~-~~~s~~~-------~~a~~~Gl~~~~E~ 164 (250)
T d2dfaa1 101 -EGLPL--HHVKPHGALYLKACRDRETARAIALAVKAFDP-----GLPLVV-LPGTVYE-------EEARKAGLRVVLEA 164 (250)
T ss_dssp -TTCCC--CCBCCCHHHHHHHHHCHHHHHHHHHHHHHHCT-----TCCEEE-CTTSHHH-------HHHHHTTCCEEEEE
T ss_pred -cCCce--eeechhHHHhhhhhcCHHHHHHHHHHHHhhCC-----CceEEe-cCchhHH-------HHHhhcCCceeeEE
Confidence 11111 012224432211 1335689999999999974 788766 5555533 33567898865 2
Q ss_pred cC-----CC-------------CCHHHHHHHHHHHhhh
Q 026236 220 YG-----PE-------------ATMTGICKQAIDCIMS 239 (241)
Q Consensus 220 ~~-----~~-------------~~m~eav~~av~~~~~ 239 (241)
|- +. ++-+++++++++++++
T Consensus 165 FADR~Y~~dG~LvpR~~~gAvi~d~~~~~~qv~~~~~~ 202 (250)
T d2dfaa1 165 FPERAYLRSGQLAPRSMPGSWITDPEEAARRALRMVLE 202 (250)
T ss_dssp CTTBCBCTTSSBCCTTSTTCBCCCHHHHHHHHHHHHHT
T ss_pred eecccCCCCCCEEEeccCccccCChHHHHHHHHHHHHC
Confidence 21 11 4678888898888764
No 43
>d8abpa_ c.93.1.1 (A:) L-arabinose-binding protein {Escherichia coli [TaxId: 562]}
Probab=28.59 E-value=1.1e+02 Score=23.00 Aligned_cols=66 Identities=14% Similarity=0.041 Sum_probs=44.8
Q ss_pred HHHHHHhhccCCCCccee-ccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEeccccccccHHHHHHHHHHHHHHhhh
Q 026236 103 YADTVGDLGYASELGNYA-EYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKES 181 (241)
Q Consensus 103 tmD~i~~~~~gg~pANFl-D~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~n~T~~d~iA~GIv~A~~~~~~ 181 (241)
.++.++.+ +-.+.+.. ...+..+.+.-+++++.+++. +++.+..+ +++ .-|.+|.|+++|+++.+.
T Consensus 154 ~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~--v~~------~~d~~a~g~~~Al~~~G~ 220 (305)
T d8abpa_ 154 SMDALKAA--GFPEKQIYQVPTKSNDIPGAFDAANSMLVQ---HPEVKHWL--IVG------MNDSTVLGGVRATEGQGF 220 (305)
T ss_dssp HHHHHHHH--TCCGGGEEEEECSSSSHHHHHHHHHHHHTT---CTTCSEEE--EEC------SSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHh--hccccccceeccCCcchhhhHHHHHhhhcc---CCCccccc--ccc------cchHHHHHHHHHHHHhhc
Confidence 46788887 54555543 445777888888888888774 34443222 333 346789999999999874
No 44
>d1cm3a_ d.94.1.1 (A:) Histidine-containing phosphocarrier protein (HPr) {Escherichia coli [TaxId: 562]}
Probab=28.23 E-value=27 Score=23.40 Aligned_cols=27 Identities=19% Similarity=0.231 Sum_probs=23.1
Q ss_pred ceeEEEEecCCChhHHHHHHHHHHHHh
Q 026236 187 RMHIFVRRGGPNYQTGLAKMRALGEEL 213 (241)
Q Consensus 187 ~vPiVvRl~Gtn~~~g~~~l~~~l~~~ 213 (241)
.=.|.|+..|++++++++.|.+++++.
T Consensus 58 G~~i~i~~~G~De~~A~~~l~~~~~~~ 84 (85)
T d1cm3a_ 58 GTVVTISAEGEDEQKAVEHLVKLMAEL 84 (85)
T ss_dssp TCEEEEEEESTTHHHHHHHHHHHHHHC
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHhc
Confidence 456899999999999999998888763
No 45
>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.90 E-value=46 Score=22.94 Aligned_cols=54 Identities=15% Similarity=0.207 Sum_probs=35.8
Q ss_pred EEEEeccccccccHHHHHHHHHHHHHHhhhhhcccceeEEEEec---CCChhHHHHHHHHHHHHhCCCeE
Q 026236 152 ALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRG---GPNYQTGLAKMRALGEELGIPLE 218 (241)
Q Consensus 152 ~inI~GGI~n~T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~---Gtn~~~g~~~l~~~l~~~gi~i~ 218 (241)
++.|+||. +-|+ +..++++++. ++-+|.|-. ..-..+.-+.+++.+++.|+.++
T Consensus 25 vvIvGgG~---iG~E-----~A~~l~~~G~-----~Vtlv~~~~~~l~~~d~~~~~~~~~~l~~~Gv~i~ 81 (125)
T d3grsa2 25 SVIVGAGY---IAVE-----MAGILSALGS-----KTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVL 81 (125)
T ss_dssp EEEECCSH---HHHH-----HHHHHHHTTC-----EEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEE
T ss_pred EEEEcCCc---cHHH-----HHHHHhcCCc-----EEEEEeeccccccchhhHHHHHHHHHHHHCCCEEE
Confidence 67889998 3444 4566777763 777777742 22234455667888899999876
No 46
>d1su7a_ e.26.1.2 (A:) Ni-containing carbon monoxide dehydrogenase {Carboxydothermus hydrogenoformans [TaxId: 129958]}
Probab=27.32 E-value=85 Score=28.62 Aligned_cols=60 Identities=12% Similarity=0.159 Sum_probs=44.1
Q ss_pred EEEEeccccccccHHHHHHHHHHHHHHhhhhhcccceeEEEEecCCChhHHHHHHHHHHHHhCCCeE
Q 026236 152 ALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLE 218 (241)
Q Consensus 152 ~inI~GGI~n~T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g~~~l~~~l~~~gi~i~ 218 (241)
++|+ |..+++.|.-.+|..+.+++..-- .++|++.-..+--+|+|+.+.--. -.+|||++
T Consensus 517 VL~~-GsCvDn~ri~~~a~alA~~lg~di-----n~LP~~~~apew~eqKAvai~~~~-~~lGI~~~ 576 (633)
T d1su7a_ 517 VLHM-GSCVDNSRAVALVAALANRLGVDL-----DRLPVVASAAEAMHEKAVAIGTWA-VTIGLPTH 576 (633)
T ss_dssp EEEE-ESSTTHHHHHHHHHHHHHHHTSCG-----GGSSEEEEETTCCSHHHHHHHHHH-HHHTCEEE
T ss_pred eeee-eccHhHHHHHHHHHHHHHHhCCCc-----ccCCcceecchHHHHHHHHHHHHH-HHcCCcEE
Confidence 5676 555556777778888888775432 389999999999999997777543 44799875
No 47
>d1dnpa2 c.28.1.1 (A:1-200) DNA photolyase {Escherichia coli [TaxId: 562]}
Probab=27.29 E-value=1e+02 Score=22.83 Aligned_cols=57 Identities=11% Similarity=0.142 Sum_probs=40.2
Q ss_pred HHHHHHHHHhhhhhcccceeEEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHH
Q 026236 170 NGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMT 227 (241)
Q Consensus 170 ~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~ 227 (241)
+=+.++++++...+.+...+++||- |...++..++|.++.++.++.-.++..+..-.
T Consensus 52 ~fl~~sL~~L~~~L~~~g~~L~v~~-g~~~~~~~~~l~~l~~~~~i~~v~~n~~~~~~ 108 (200)
T d1dnpa2 52 ELINAQLNGLQIALAEKGIPLLFRE-VDDFVASVEIVKQVCAENSVTHLFYNYQYEVN 108 (200)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEE-CSSHHHHHHHHHHHHHHHTCCEEEEECCCSHH
T ss_pred hhHHHHHHHHHhhhhhccceeEEEE-ecccccchhHHHHHHHhcCCcEEEEeccccHH
Confidence 4456666666666666678988854 76667888888999999999765555554443
No 48
>d3bula2 c.23.6.1 (A:741-896) Methionine synthase, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=26.91 E-value=1.1e+02 Score=22.28 Aligned_cols=109 Identities=9% Similarity=0.104 Sum_probs=67.2
Q ss_pred hhHHHHHHHHHhhccCCCCcceeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEeccccccccHHHHHHHHHHHHH
Q 026236 98 GASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALR 177 (241)
Q Consensus 98 GlaMatmD~i~~~~~gg~pANFlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~n~T~~d~iA~GIv~A~~ 177 (241)
|.-| .-+++..+ | -+=.|+|-+.+++.+.++.+-. +++ +|-+..-+ |..-...+-+++.++
T Consensus 22 G~~i-v~~~l~~~--G---~~Vi~LG~~~p~e~~~~~~~~~------~~d----~i~lS~l~---~~~~~~~~~~~~~l~ 82 (156)
T d3bula2 22 GKNI-VGVVLQCN--N---YEIVDLGVMVPAEKILRTAKEV------NAD----LIGLSGLI---TPSLDEMVNVAKEME 82 (156)
T ss_dssp HHHH-HHHHHHTT--T---CEEEECCSSBCHHHHHHHHHHH------TCS----EEEEECCS---THHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHC--C---CEEEECCCCCCHHHHHHHHHhh------CCC----EEEEeccc---ccchHHHHHHHHHHH
Confidence 4334 34667776 4 3558899999999999887754 344 33444444 677778889999999
Q ss_pred HhhhhhcccceeEEEEecCCChhHHHHHHHHHHHHh-CCCeEEcCCCCCHHHHHHHHHHHh
Q 026236 178 EKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEEL-GIPLEVYGPEATMTGICKQAIDCI 237 (241)
Q Consensus 178 ~~~~~~~~~~vPiVvRl~Gtn~~~g~~~l~~~l~~~-gi~i~~~~~~~~m~eav~~av~~~ 237 (241)
+.+. +.|++|-=...+.+..- .++.... |-.++ . .+..++++.|-++.
T Consensus 83 ~~g~-----~~~vivGG~~~~~~~~~---~~~~~~y~gad~y--a--~DA~~av~~a~~Ll 131 (156)
T d3bula2 83 RQGF-----TIPLLIGGATTSKAHTA---VKIEQNYSGPTVY--V--QNASRTVGVVAALL 131 (156)
T ss_dssp HTTC-----CSCEEEESTTCCHHHHH---HHTGGGCSSCEEE--C--CSHHHHHHHHHHHT
T ss_pred hccc-----cceEEEecccccchHHH---hhhccccccceee--c--cCHHHHHHHHHHHh
Confidence 9874 78877653333333320 2222222 33222 2 57777888877664
No 49
>d1q6za1 c.31.1.3 (A:182-341) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]}
Probab=26.62 E-value=41 Score=24.03 Aligned_cols=43 Identities=7% Similarity=0.153 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHHHhhcccCCCCcceEEEEEeccccccccHHHHHHHHHHHHHHh
Q 026236 126 PNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREK 179 (241)
Q Consensus 126 a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~n~T~~d~iA~GIv~A~~~~ 179 (241)
++.+.+.++.+.|.+- .|. +|.+++|+. +++ ..+-+++..+.+
T Consensus 4 ~~~~~ld~~~~~l~~A----~rP---vii~G~g~~---~~~-~~~~l~~lae~l 46 (160)
T d1q6za1 4 LNDQDLDILVKALNSA----SNP---AIVLGPDVD---AAN-ANADCVMLAERL 46 (160)
T ss_dssp CCHHHHHHHHHHHHHC----SSC---EEEECHHHH---HTT-CHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhC----CCE---EEEECcCcc---ccc-cchHHHHHHHhc
Confidence 5788999999999774 333 566677763 222 334445555554
No 50
>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=25.51 E-value=83 Score=21.50 Aligned_cols=53 Identities=21% Similarity=0.193 Sum_probs=34.7
Q ss_pred EEEEeccccccccHHHHHHHHHHHHHHhhhhhcccceeEEEEe---cCCChhHHHHHHHHHHHHhCCCeE
Q 026236 152 ALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRR---GGPNYQTGLAKMRALGEELGIPLE 218 (241)
Q Consensus 152 ~inI~GGI~n~T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl---~Gtn~~~g~~~l~~~l~~~gi~i~ 218 (241)
++.|+||.+ - -=+..+++.++. ++-|+.|= .+-..+ --+.+.+.+++.|++++
T Consensus 23 vvIIGgG~i---G-----~E~A~~l~~lG~-----~Vtii~~~~~l~~~D~~-~~~~l~~~l~~~Gv~i~ 78 (122)
T d1h6va2 23 TLVVGASYV---A-----LECAGFLAGIGL-----DVTVMVRSILLRGFDQD-MANKIGEHMEEHGIKFI 78 (122)
T ss_dssp EEEECCSHH---H-----HHHHHHHHHTTC-----CEEEEESSSSSTTSCHH-HHHHHHHHHHHTTEEEE
T ss_pred EEEECCCcc---H-----HHHHHHHhhcCC-----eEEEEEechhhccCCHH-HHHHHHHHHHHCCCEEE
Confidence 778899983 2 335557888874 78888752 122222 33556777899998876
No 51
>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}
Probab=24.03 E-value=1.2e+02 Score=21.58 Aligned_cols=61 Identities=3% Similarity=0.005 Sum_probs=35.3
Q ss_pred CCcceEEEEEeccccccccHHHHHHHHHHHHHHhhhhhcccceeEEE-EecCCChhHHHHHHHHHHHHhCCC
Q 026236 146 PDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFV-RRGGPNYQTGLAKMRALGEELGIP 216 (241)
Q Consensus 146 ~~~~~i~inI~GGI~n~T~~d~iA~GIv~A~~~~~~~~~~~~vPiVv-Rl~Gtn~~~g~~~l~~~l~~~gi~ 216 (241)
-++|+++|+++..- |+.|......+.+..+++.. .+..++. =....+.++. ++.+++.+++
T Consensus 54 ~kGK~vll~F~a~w--C~~C~~~~~~l~~~~~~~~~----~~~~vv~vs~d~~~~~~~----~~~~~~~~~~ 115 (176)
T d1jfua_ 54 FRGKTLLVNLWATW--CVPCRKEMPALDELQGKLSG----PNFEVVAINIDTRDPEKP----KTFLKEANLT 115 (176)
T ss_dssp GTTSEEEEEEECTT--CHHHHHHHHHHHHHHHHHCB----TTEEEEEEECCCSCTTHH----HHHHHHTTCC
T ss_pred hCCCEEEEEeccCc--ccchHHHHHhhhhccccccc----cccccccccccccchhhh----hhhHhhhCCc
Confidence 45667788887644 36787777777665555542 2333322 2223345555 6777777765
No 52
>d1byka_ c.93.1.1 (A:) Trehalose repressor, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=24.01 E-value=1.3e+02 Score=22.25 Aligned_cols=113 Identities=11% Similarity=-0.040 Sum_probs=64.9
Q ss_pred ccEEEEec-CchhH------HHHHHHHHhhccCCCCcceeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEecccc
Q 026236 88 GRIWTMVA-GGGAS------VIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIA 160 (241)
Q Consensus 88 G~Ig~mvn-GaGla------MatmD~i~~~~~gg~pANFlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~ 160 (241)
.+|+++.. ....+ -...+.+..+ |-+|.... .+.+.+..+++++-+++ +++.+ |+
T Consensus 116 ~~i~~i~~~~~~~~~~~~r~~g~~~~~~~~--~i~~~~~~---~~~~~~~~~~~~~~~l~---~~~~a--ii-------- 177 (255)
T d1byka_ 116 RNISYLGVPHSDVTTGKRRHEAYLAFCKAH--KLHPVAAL---PGLAMKQGYENVAKVIT---PETTA--LL-------- 177 (255)
T ss_dssp CCEEEECCCTTSTTTTHHHHHHHHHHHHHT--TCCCEEEC---CCSCHHHHHHHSGGGCC---TTCCE--EE--------
T ss_pred ccccccCCCcccccHHHHHhhHHHHHHHHc--CCCccccc---CCCCHHHHHHHHHHHhC---Cccce--ee--------
Confidence 57887743 22222 2456777787 55655432 34566666666555544 34432 22
Q ss_pred ccccHHHHHHHHHHHHHHhhhhhcccceeEEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHh
Q 026236 161 NFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 237 (241)
Q Consensus 161 n~T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~~~ 237 (241)
..-|.+|-|+++++++.+. +.|.|+-..++. .+ +.+. -.| ..+. .+.++..++|+++.
T Consensus 178 --~~~d~~A~g~~~~l~~~g~-----~d~~ii~~d~~~--~~-----~~~~-p~l--tti~--~~~~~~g~~a~~~L 235 (255)
T d1byka_ 178 --CATDTLALGASKYLQEQRI-----DTLQLASVGNTP--LM-----KFLH-PEI--VTVD--PGYAEAGRQAACQL 235 (255)
T ss_dssp --ESSHHHHHHHHHHHHHTTC-----CSCEEEEECCCH--HH-----HHHC-TTS--EEEB--CCHHHHHHHHHHHH
T ss_pred --ccchhhHhhHHHHHHHhCc-----cccceeeeCChH--HH-----HhcC-CCc--eEEE--eCHHHHHHHHHHHH
Confidence 2448899999999999874 567677665543 22 2111 233 3222 47888777776654
No 53
>d1xrsb1 c.23.6.1 (B:102-261) D-lysine 5,6-aminomutase beta subunit KamE, C-terminal domain {Clostridium sticklandii [TaxId: 1511]}
Probab=23.96 E-value=1.3e+02 Score=22.04 Aligned_cols=96 Identities=16% Similarity=0.278 Sum_probs=59.1
Q ss_pred eeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEeccccccccHH---HHHHHHHHHHHHhhhhhcccceeEEEEec
Q 026236 119 YAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVA---TTFNGIIRALREKESKLKAARMHIFVRRG 195 (241)
Q Consensus 119 FlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~n~T~~d---~iA~GIv~A~~~~~~~~~~~~vPiVvRl~ 195 (241)
=.|+|-.-+++++.++.+ + .+++. |.+ ..-+ |... ...+-+++.+++.+. ..++||+|-
T Consensus 59 Vi~LG~~vp~e~~v~~a~---e---~~~d~--Vgl--S~l~---t~~~~h~~~~~~~i~~l~~~g~---~d~v~vivG-- 120 (160)
T d1xrsb1 59 AYNLGSQVANEDFIKKAV---E---LEADV--LLV--SQTV---TQKNVHIQNMTHLIELLEAEGL---RDRFVLLCG-- 120 (160)
T ss_dssp EEECCSSBCHHHHHHHHH---H---TTCSE--EEE--ECCC---CTTSHHHHHHHHHHHHHHHTTC---GGGSEEEEE--
T ss_pred EEeCCCCCCHHHHHHHHH---h---cCCCE--EEE--eecc---cccchhHHHHHHHHHHHHHcCC---CCceEEEEc--
Confidence 368999999999876554 2 24553 333 2222 2221 235667788887653 124777774
Q ss_pred CCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHhhh
Q 026236 196 GPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIMS 239 (241)
Q Consensus 196 Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~~~~~ 239 (241)
|+-.. .+..++.|..- +|++.++..+++..+++...+
T Consensus 121 G~~~~------~~~a~~~GaD~-~f~~g~~a~~~a~~l~~~l~~ 157 (160)
T d1xrsb1 121 GPRIN------NEIAKELGYDA-GFGPGRFADDVATFAVKTLND 157 (160)
T ss_dssp CTTCC------HHHHHTTTCSE-EECTTCCHHHHHHHHHHHHHH
T ss_pred CCCCC------HHHHHHcCCCE-EcCCCCCHHHHHHHHHHHHHH
Confidence 43322 23345678763 577889999999999887654
No 54
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Probab=23.80 E-value=62 Score=24.80 Aligned_cols=45 Identities=16% Similarity=0.222 Sum_probs=35.3
Q ss_pred cCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHhhh
Q 026236 195 GGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIMS 239 (241)
Q Consensus 195 ~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~~~~~ 239 (241)
.=|.---|.+.|+...+.+|+|+++.....++.+++..+..+++.
T Consensus 46 ~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~~~~~~~~ 90 (207)
T d1ls1a2 46 ADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARL 90 (207)
T ss_dssp CCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcCCccccccccchhhHHHHHHHHHHhh
Confidence 344556677888999999999998777677899988888877654
No 55
>d1ybha1 c.31.1.3 (A:281-459) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]}
Probab=23.52 E-value=65 Score=23.59 Aligned_cols=28 Identities=25% Similarity=0.554 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHHHhhcccCCCCcceEEEEEecccc
Q 026236 126 PNEEEVLQYARVVIDCATADPDGRKRALLIGGGIA 160 (241)
Q Consensus 126 a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~ 160 (241)
|+.+++.+++++|.+- .+. +|.++||+.
T Consensus 4 P~~~~i~~~~~~L~~A----krP---vii~G~G~~ 31 (179)
T d1ybha1 4 PEDSHLEQIVRLISES----KKP---VLYVGGGCL 31 (179)
T ss_dssp CCHHHHHHHHHHHHHC----SSE---EEEECGGGT
T ss_pred cCHHHHHHHHHHHHhC----CCe---EEEECHHHH
Confidence 6789999999999875 332 566778885
No 56
>d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]}
Probab=23.22 E-value=63 Score=23.10 Aligned_cols=47 Identities=15% Similarity=0.062 Sum_probs=38.8
Q ss_pred EEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHH
Q 026236 190 IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDC 236 (241)
Q Consensus 190 iVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~~ 236 (241)
++--+.|-.-+-|..++...|+..|..+...|..++.++.++.+.+.
T Consensus 7 vi~~~~gD~H~lG~~mva~~l~~~G~~V~~LG~~~p~e~iv~a~~~~ 53 (137)
T d1ccwa_ 7 VLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAIET 53 (137)
T ss_dssp EEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHH
T ss_pred EEEecCCChhHHHHHHHHHHHHHCCCeEEecccccCHHHHHHHHHhc
Confidence 44556777788899999999999999988888778899998888763
No 57
>d1mo1a_ d.94.1.1 (A:) Crh, catabolite repression HPr-like protein {Bacillus subtilis [TaxId: 1423]}
Probab=23.20 E-value=29 Score=23.37 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=22.4
Q ss_pred ceeEEEEecCCChhHHHHHHHHHHHH
Q 026236 187 RMHIFVRRGGPNYQTGLAKMRALGEE 212 (241)
Q Consensus 187 ~vPiVvRl~Gtn~~~g~~~l~~~l~~ 212 (241)
.-.|.+...|++++++++-|.+++++
T Consensus 58 G~~i~i~~~G~de~~A~~~l~~~~~~ 83 (87)
T d1mo1a_ 58 GTEVTLIAQGEDEQEALEKLAAYVQE 83 (87)
T ss_dssp TCEEEEEEESTTHHHHHHHHHHHHTT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHh
Confidence 45689999999999999988888775
No 58
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}
Probab=23.07 E-value=59 Score=25.20 Aligned_cols=45 Identities=16% Similarity=0.233 Sum_probs=34.0
Q ss_pred cCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHhhh
Q 026236 195 GGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIMS 239 (241)
Q Consensus 195 ~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~~~~~ 239 (241)
.=|.---|.+.|+...+.+|+|+++.....++.++++++.+.+++
T Consensus 45 ~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~d~~~~l~~~~~~a~~ 89 (211)
T d2qy9a2 45 GDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 89 (211)
T ss_dssp CCTTCHHHHHHHHHHHHHTTCCEECCSTTCCHHHHHHHHHHHHHH
T ss_pred cccccccchhhhhhhhhhcCCcccccccCCCHHHHHHHHHHHHHH
Confidence 344445578888888888999988777777888888888776553
No 59
>d1v6ta_ c.6.2.5 (A:) Hypothetical protein PH0986 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=22.98 E-value=1.3e+02 Score=23.90 Aligned_cols=141 Identities=11% Similarity=0.167 Sum_probs=77.6
Q ss_pred cceEEecCCccEEEEe-cCchhHH-HHHHHHHhhc--cCCCC-----cceeccCCCCCHHHHHHH-------HHHHhhcc
Q 026236 79 LKFTVLNPKGRIWTMV-AGGGASV-IYADTVGDLG--YASEL-----GNYAEYSGAPNEEEVLQY-------ARVVIDCA 142 (241)
Q Consensus 79 l~yv~L~~dG~Ig~mv-nGaGlaM-atmD~i~~~~--~gg~p-----ANFlD~GG~a~~~~v~~a-------~~iil~~~ 142 (241)
+.|+. .-||+|=. .|--.+| .|+-+-+.++ +|..| .||-=--=..+++.++.. +.-+.+.
T Consensus 25 m~~is---saNIACG~HAGD~~~m~~tv~lA~~~~V~IGAHPsypD~~gFGRr~~~~s~~el~~~i~~Qi~al~~~a~~- 100 (254)
T d1v6ta_ 25 MKYIT---SANVACGWHAGDPLVMRKTVRLAKENDVQVGAHPGYPDLMGFGRRYMKLTPEEARNYILYQVGALYAFAKA- 100 (254)
T ss_dssp TTTCS---EEEEECSSSSCCHHHHHHHHHHHHHTTCEEEEECCCSCTTTTTCSCCCCCHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HhHhh---hHHHhcCcccCCHHHHHHHHHHHHHcCCCccCCCCCcCccccCcccccCCHHHHHHHHHHHHHHHHHHHHH-
Confidence 44665 47887743 3334555 3455555553 34444 444333334566665432 2223222
Q ss_pred cCCCCcceEEEEEeccccccc-cHHHHHHHHHHHHHHhhhhhcccceeEEEEecCCChhHHHHHHHHHHHHhCCCeE--E
Q 026236 143 TADPDGRKRALLIGGGIANFT-DVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLE--V 219 (241)
Q Consensus 143 ~~~~~~~~i~inI~GGI~n~T-~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g~~~l~~~l~~~gi~i~--~ 219 (241)
...+. -.|=-.|..=|-. +=.++|+.|++|+++..+ ++|++ -+.|+..++ ..++.|+++. +
T Consensus 101 -~g~~l--~hVKpHGALYN~a~~D~~lA~ai~~ai~~~~~-----~l~l~-~~~~s~~~~-------~A~~~Gl~~~~E~ 164 (254)
T d1v6ta_ 101 -EGLEL--QHVKPHGALYNAMVKEEDLARAVIEGILDFDK-----DLILV-TLSNSRVAD-------IAEEMGLKVAHEV 164 (254)
T ss_dssp -TTCCE--EEECCCHHHHHHHHHCHHHHHHHHHHHHHHCT-----TCEEE-EETTCHHHH-------HHHHHTCCEEEEE
T ss_pred -cCCee--EEEeehHHHHHHHhcCHHHHHHHHHHHHHhCc-----CccEe-ecCCcHHHH-------HHHHhCCceeeee
Confidence 12222 2344456432211 225689999999999874 78855 466665433 3567788864 2
Q ss_pred cC-----CC-------------CCHHHHHHHHHHHhhh
Q 026236 220 YG-----PE-------------ATMTGICKQAIDCIMS 239 (241)
Q Consensus 220 ~~-----~~-------------~~m~eav~~av~~~~~ 239 (241)
|- +. ++-+++++++++++++
T Consensus 165 FADR~Y~~dG~Lv~R~~~gAvi~d~~~~~~qv~~mv~~ 202 (254)
T d1v6ta_ 165 FADRAYNPDGTLVPRGRPGAVIEDKEEIAERVISMVKD 202 (254)
T ss_dssp CTTBCBCTTSCBCC-----CBCCCHHHHHHHHHHHHHH
T ss_pred eeeccCCCCCCEEeecccccccCCHHHHHHHHHHHHhC
Confidence 21 11 4677899999888764
No 60
>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}
Probab=21.66 E-value=46 Score=23.21 Aligned_cols=55 Identities=16% Similarity=0.116 Sum_probs=35.4
Q ss_pred EEEEEeccccccccHHHHHHHHHHHHHHhhhhhcccceeEEEEec---CCChhHHHHHHHHHHHHhCCCeE
Q 026236 151 RALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRG---GPNYQTGLAKMRALGEELGIPLE 218 (241)
Q Consensus 151 i~inI~GGI~n~T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~---Gtn~~~g~~~l~~~l~~~gi~i~ 218 (241)
.++.|+||.. =| =+..+++.++. ++-+|-|.. ..-..+--+.+++.+++.|+.++
T Consensus 28 ~vvIiGgG~I---G~-----E~A~~~~~~G~-----~Vtive~~~~il~~~d~~~~~~l~~~l~~~gv~~~ 85 (125)
T d1ojta2 28 KLLIIGGGII---GL-----EMGTVYSTLGS-----RLDVVEMMDGLMQGADRDLVKVWQKQNEYRFDNIM 85 (125)
T ss_dssp EEEEESCSHH---HH-----HHHHHHHHHTC-----EEEEECSSSSSSTTSCHHHHHHHHHHHGGGEEEEE
T ss_pred eEEEECCCHH---HH-----HHHHHhhcCCC-----EEEEEEeeccccccchhhHHHHHHHHHHHcCcccc
Confidence 3788899983 33 35567788773 677776633 22333444566788888898765
No 61
>d1o5za1 c.59.1.2 (A:294-430) Folylpolyglutamate synthetase, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=21.64 E-value=1.1e+02 Score=20.91 Aligned_cols=91 Identities=12% Similarity=0.035 Sum_probs=49.2
Q ss_pred eeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEeccccccccHHHHHHHHHHHHHHhhhhhcccceeEEEEecCCC
Q 026236 119 YAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPN 198 (241)
Q Consensus 119 FlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~n~T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn 198 (241)
++|++.++ +.+...++.+.+. .++.+ ++-|||..- |.-.+++++.+.... +.-+++....++
T Consensus 14 ilD~AHN~--~a~~~l~~~l~~~---~~~~~--~~~i~g~~~-----dkd~~~~l~~l~~~~------~~i~~~~~~~~r 75 (137)
T d1o5za1 14 ILDGAHNP--HGAESLVRSLKLY---FNGEP--LSLVIGILD-----DKNREDILRKYTGIF------ERVIVTRVPSPR 75 (137)
T ss_dssp EECCCCSH--HHHHHHHHHHHHH---CTTCC--EEEEECCCT-----TSCHHHHHGGGTTTC------SEEEECCCSSTT
T ss_pred EEECCCCH--HHHHHHHHHHHhh---hcccc--ceeeecccc-----cccHHHHHHHHHhhc------ceeeeeeccccc
Confidence 68888855 5666666666553 12222 344566432 112245555554432 333566666666
Q ss_pred hhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHH
Q 026236 199 YQTGLAKMRALGEELGIPLEVYGPEATMTGICK 231 (241)
Q Consensus 199 ~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~ 231 (241)
.... +.|++...+.+.++.++. +..+|++
T Consensus 76 ~~~~-~~l~~~~~~~~~~~~~~~---~~~~ai~ 104 (137)
T d1o5za1 76 MKDM-NSLVDMAKKFFKNVEVIE---DPLEAIE 104 (137)
T ss_dssp CCCH-HHHHHHHHHHCSCCEECS---SHHHHHH
T ss_pred cCCH-HHHHHHHHHhCCCcEEec---CHHHHHh
Confidence 4444 445566667777766554 6666654
No 62
>d1rrma_ e.22.1.2 (A:) Lactaldehyde reductase FucO {Escherichia coli [TaxId: 562]}
Probab=21.59 E-value=1.8e+02 Score=23.57 Aligned_cols=74 Identities=18% Similarity=0.090 Sum_probs=49.2
Q ss_pred EEEecCchhHH-----HHHHHHHhhccCCCCcceeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEeccccccccH
Q 026236 91 WTMVAGGGASV-----IYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDV 165 (241)
Q Consensus 91 g~mvnGaGlaM-----atmD~i~~~~~gg~pANFlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~n~T~~ 165 (241)
.+++.|.++.= -..+.+... |=+..=|-++.+.|+.+.+.++.+..-.. +++. +|=|+||- +
T Consensus 33 ~Livt~~~~~~~g~~~~v~~~L~~~--gi~~~vf~~v~~~p~~~~v~~~~~~~~~~---~~D~---IiaiGGGS-----~ 99 (385)
T d1rrma_ 33 ALIVTDKTLVQCGVVAKVTDKMDAA--GLAWAIYDGVVPNPTITVVKEGLGVFQNS---GADY---LIAIGGGS-----P 99 (385)
T ss_dssp EEEECBHHHHHTTHHHHHHHHHHHT--TCEEEEECBCCSSCBHHHHHHHHHHHHHH---TCSE---EEEEESHH-----H
T ss_pred EEEEECcchhhCcHHHHHHHHHHHc--CCeEEEEcCccCCCCHHHHHHHhhhhhcc---CCCE---EEecCCCc-----h
Confidence 34566655432 134455555 43555577889999999999999998764 4543 67888885 3
Q ss_pred HHHHHHHHHHHH
Q 026236 166 ATTFNGIIRALR 177 (241)
Q Consensus 166 d~iA~GIv~A~~ 177 (241)
-.+|++|.-.+.
T Consensus 100 iD~aK~ia~~~~ 111 (385)
T d1rrma_ 100 QDTCKAIGIISN 111 (385)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHHHHhc
Confidence 448888865544
No 63
>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}
Probab=21.56 E-value=78 Score=21.18 Aligned_cols=54 Identities=22% Similarity=0.295 Sum_probs=34.1
Q ss_pred EEEEeccccccccHHHHHHHHHHHHHHhhhhhcccceeEEEEecC--CC-hhHHHHHHHHHHHHhCCCeE
Q 026236 152 ALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGG--PN-YQTGLAKMRALGEELGIPLE 218 (241)
Q Consensus 152 ~inI~GGI~n~T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~G--tn-~~~g~~~l~~~l~~~gi~i~ 218 (241)
++.|+||.+ -|. +| .++++.+. ++-+|-|..- ++ ..+.-+.+++.+++.|++++
T Consensus 24 vvIiGgG~~---G~E-~A----~~l~~~g~-----~Vtlve~~~~il~~~d~~~~~~l~~~l~~~gV~i~ 80 (115)
T d1lvla2 24 LVVVGGGYI---GLE-LG----IAYRKLGA-----QVSVVEARERILPTYDSELTAPVAESLKKLGIALH 80 (115)
T ss_dssp EEEECCSHH---HHH-HH----HHHHHHTC-----EEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEE
T ss_pred EEEECCCHH---HHH-HH----HHHhhccc-----ceEEEeeeccccccccchhHHHHHHHHHhhcceEE
Confidence 778899983 444 34 46666663 5666655321 22 23344677888999999876
No 64
>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=21.36 E-value=75 Score=21.72 Aligned_cols=55 Identities=15% Similarity=0.205 Sum_probs=35.4
Q ss_pred EEEEEeccccccccHHHHHHHHHHHHHHhhhhhcccceeEEEEec---CCChhHHHHHHHHHHHHhCCCeE
Q 026236 151 RALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRG---GPNYQTGLAKMRALGEELGIPLE 218 (241)
Q Consensus 151 i~inI~GGI~n~T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~---Gtn~~~g~~~l~~~l~~~gi~i~ 218 (241)
.++.|+||.. -|. +..++..++. ++-|+-|.. ..-..+.-+.+.+.+++.|+.++
T Consensus 25 ~~vIiG~G~i---g~E-----~A~~l~~lG~-----~Vtii~~~~~~l~~~d~ei~~~l~~~l~~~GV~i~ 82 (122)
T d1v59a2 25 RLTIIGGGII---GLE-----MGSVYSRLGS-----KVTVVEFQPQIGASMDGEVAKATQKFLKKQGLDFK 82 (122)
T ss_dssp EEEEECCSHH---HHH-----HHHHHHHTTC-----EEEEECSSSSSSSSSCHHHHHHHHHHHHHTTCEEE
T ss_pred eEEEECCCch---HHH-----HHHHHHhhCc-----ceeEEEeccccchhhhhhhHHHHHHHHHhccceEE
Confidence 3788899983 333 4567777763 677776533 22233444666888899999876
No 65
>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.81 E-value=79 Score=21.92 Aligned_cols=58 Identities=14% Similarity=0.055 Sum_probs=36.9
Q ss_pred EEEEeccccccccHHHHHHHHHHHHHHhhhhhcccceeEEEEecCC---C-hhHHHHHHHHHHHHhCCCeE
Q 026236 152 ALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP---N-YQTGLAKMRALGEELGIPLE 218 (241)
Q Consensus 152 ~inI~GGI~n~T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gt---n-~~~g~~~l~~~l~~~gi~i~ 218 (241)
++.|+||. +-|. +|..+.+..++.+ .++.+|.|-... . .++.-+.+.+.+++.|+.++
T Consensus 40 i~IvGgG~---~G~E-~A~~l~~~~~~~g-----~~Vt~i~~~~~~l~~~~~~~~~~~~~~~l~~~GV~~~ 101 (137)
T d1m6ia2 40 ITIIGGGF---LGSE-LACALGRKARALG-----TEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVM 101 (137)
T ss_dssp EEEECCSH---HHHH-HHHHHHHHHHHHT-----CEEEEECSSSSTTTTTSCHHHHHHHHHHHHTTTCEEE
T ss_pred EEEECCCH---HHHH-HHHHHHHHHHhcC-----CEEEEecccccCCcccCCHHHHHHHHHHHHhCCcEEE
Confidence 66788888 3444 6776666666655 266666664432 2 23344567888999998765
No 66
>d1u3da2 c.28.1.1 (A:13-197) Cryptochrome {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=20.53 E-value=1.1e+02 Score=22.34 Aligned_cols=54 Identities=11% Similarity=0.119 Sum_probs=33.8
Q ss_pred HHHHHHHHhhhhhcccceeEEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHH
Q 026236 171 GIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTG 228 (241)
Q Consensus 171 GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~e 228 (241)
=+.++++++..++.....+++++..|... +.|.++.++.++.-.++..+..-.+
T Consensus 50 fl~~sL~~L~~~L~~~g~~L~v~~~g~~~----~~l~~l~~~~~i~~v~~n~~~~~~e 103 (185)
T d1u3da2 50 WLKNSLAQLDSSLRSLGTCLITKRSTDSV----ASLLDVVKSTGASQIFFNHLYDPLS 103 (185)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEECSCHH----HHHHHHHHHHTCCEEEEECCCSHHH
T ss_pred HHHHHHHHHHHHHHhcCCcceEeeccchH----HHHHHHHHhcCCceEEEeccccHHH
Confidence 35566666666555567888887766543 3347778888887555554444433
No 67
>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=20.03 E-value=1.1e+02 Score=20.37 Aligned_cols=54 Identities=17% Similarity=0.256 Sum_probs=34.1
Q ss_pred EEEEeccccccccHHHHHHHHHHHHHHhhhhhcccceeEEEEecC--CC-hhHHHHHHHHHHHHhCCCeE
Q 026236 152 ALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGG--PN-YQTGLAKMRALGEELGIPLE 218 (241)
Q Consensus 152 ~inI~GGI~n~T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~G--tn-~~~g~~~l~~~l~~~gi~i~ 218 (241)
++.|+||.+ -|. +..++.+++. ++-+|-|..- +. ..+--+.+.+.+++.|++++
T Consensus 25 v~IiGgG~i---g~E-----~A~~l~~~G~-----~Vtlve~~~~il~~~d~~~~~~l~~~l~~~GI~i~ 81 (117)
T d1ebda2 25 LVVIGGGYI---GIE-----LGTAYANFGT-----KVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVV 81 (117)
T ss_dssp EEEECCSHH---HHH-----HHHHHHHTTC-----EEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEE
T ss_pred EEEECCCcc---cee-----eeeeeccccc-----EEEEEEecceecccccchhHHHHHHHHHhcCCEEE
Confidence 678899983 333 3446666663 6777776442 12 23344556788888999876
Done!