Query 026237
Match_columns 241
No_of_seqs 155 out of 1155
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 08:49:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026237.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026237hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yby_A Translation elongation 100.0 1E-78 3.6E-83 530.8 24.1 207 33-241 8-214 (215)
2 1ueb_A EF-P, TT0860, elongatio 100.0 1.6E-75 5.5E-80 500.5 26.0 183 58-241 1-183 (184)
3 3oyy_A EF-P, elongation factor 100.0 7.3E-75 2.5E-79 498.9 24.9 184 57-241 3-188 (191)
4 3tre_A EF-P, elongation factor 100.0 1E-75 3.5E-80 504.3 18.0 186 56-241 4-189 (191)
5 3a5z_B EF-P, elongation factor 100.0 1.1E-75 3.8E-80 503.9 13.5 185 57-241 5-189 (191)
6 1bkb_A Translation initiation 100.0 3.2E-41 1.1E-45 275.7 18.2 125 56-180 6-132 (136)
7 1iz6_A Initiation factor 5A; S 100.0 2.7E-40 9.2E-45 271.0 17.2 122 57-178 5-129 (138)
8 3cpf_A Eukaryotic translation 100.0 1.2E-39 4E-44 267.1 14.5 118 57-174 5-126 (138)
9 2eif_A IF-5A, protein (eukaryo 100.0 8.9E-39 3.1E-43 261.3 17.6 118 58-178 10-128 (136)
10 1x6o_A Eukaryotic initiation f 100.0 7.7E-37 2.6E-41 259.0 15.8 118 57-174 29-158 (174)
11 3er0_A Eukaryotic translation 100.0 1.7E-37 6E-42 261.4 9.8 118 57-174 29-150 (167)
12 3hks_A EIF-5A-2, eukaryotic tr 100.0 1.1E-35 3.6E-40 250.5 15.6 118 57-174 27-150 (167)
13 1khi_A HEX1; membrane sealing, 99.6 1.2E-14 3.9E-19 122.8 13.6 116 57-178 33-164 (176)
14 3r8s_P 50S ribosomal protein L 59.7 20 0.00067 27.9 5.8 67 58-125 13-88 (114)
15 1yfb_A Transition state regula 56.4 12 0.00041 25.5 3.7 34 143-178 19-52 (59)
16 2ftc_K 39S ribosomal protein L 56.4 45 0.0015 25.1 7.2 62 62-124 2-71 (98)
17 3v2d_T 50S ribosomal protein L 56.1 23 0.00079 28.6 5.8 67 58-125 16-91 (146)
18 2jn4_A Hypothetical protein FI 55.6 32 0.0011 25.5 6.0 53 163-222 19-72 (87)
19 1ed7_A Chitinase A1, (CHBD-CHI 54.5 4.2 0.00014 26.1 1.0 26 63-88 7-32 (45)
20 1dj7_B Ferredoxin thioredoxin 50.0 3.3 0.00011 30.0 -0.1 18 172-189 41-58 (75)
21 1jt8_A EIF-1A, probable transl 44.7 24 0.00083 26.6 4.1 49 178-234 10-70 (102)
22 1mvg_A Liver basic fatty acid 44.3 72 0.0025 24.4 6.9 45 95-139 46-91 (125)
23 2zjr_M 50S ribosomal protein L 43.7 22 0.00076 29.3 4.0 66 59-125 22-96 (166)
24 3kbg_A 30S ribosomal protein S 43.3 23 0.0008 30.3 4.2 30 208-237 102-132 (213)
25 3iz6_D 40S ribosomal protein S 41.8 27 0.00091 30.9 4.4 30 208-237 138-168 (265)
26 1b56_A Fatty acid binding prot 41.7 83 0.0029 24.3 7.0 45 95-139 51-96 (135)
27 4a1y_A Myelin P2 protein; tran 41.7 53 0.0018 25.5 5.8 44 96-139 51-95 (133)
28 3j20_E 30S ribosomal protein S 40.3 13 0.00046 32.4 2.3 30 208-237 139-172 (243)
29 3ppt_A Sodium-calcium exchange 40.0 97 0.0033 23.9 7.1 45 95-139 48-93 (133)
30 2f9h_A PTS system, IIA compone 39.5 27 0.00093 27.5 3.8 21 62-82 53-73 (129)
31 1o8v_A Fatty acid binding prot 39.5 1E+02 0.0034 23.8 7.1 45 95-139 50-95 (134)
32 1mdc_A Insect fatty acid bindi 39.2 97 0.0033 23.9 7.0 45 95-139 48-93 (132)
33 1ifc_A Intestinal fatty acid b 38.9 82 0.0028 24.3 6.5 45 95-139 47-92 (132)
34 2a0a_A DER F 13; beta barrel, 38.1 1.2E+02 0.0042 23.2 7.5 45 95-139 48-94 (131)
35 3q6l_A Fatty acid-binding prot 38.0 1E+02 0.0035 24.5 7.1 45 95-139 69-114 (152)
36 3p6d_A Fatty acid-binding prot 37.2 1.1E+02 0.0038 23.8 7.1 45 95-139 56-101 (139)
37 1vyf_A SM14, 14 kDa fatty acid 37.1 91 0.0031 24.1 6.5 45 95-139 50-96 (135)
38 2k50_A Replication factor A re 36.1 66 0.0023 23.6 5.4 54 55-112 4-62 (115)
39 2dgy_A MGC11102 protein; EIF-1 35.8 76 0.0026 24.2 5.7 42 185-234 16-65 (111)
40 2xzm_W 40S ribosomal protein S 35.5 51 0.0017 29.0 5.2 30 208-237 140-170 (260)
41 4a60_A Fatty acid-binding prot 35.4 97 0.0033 24.8 6.6 44 96-139 72-116 (154)
42 3u5c_E RP5, S7, YS6, 40S ribos 35.4 27 0.00093 30.8 3.4 30 208-237 138-168 (261)
43 2kca_A Bacteriophage SPP1 comp 35.2 1E+02 0.0035 22.1 6.2 38 62-101 66-104 (109)
44 2rcq_A CRBP-II, retinol-bindin 34.9 99 0.0034 24.2 6.5 45 95-139 52-99 (141)
45 2qo4_A Liver-basic fatty acid 34.8 72 0.0024 24.4 5.5 44 96-139 48-92 (126)
46 2l66_A SSO7C4, transcriptional 34.8 17 0.00057 23.8 1.6 32 143-176 9-40 (53)
47 1fdq_A Fatty acid-binding prot 34.1 80 0.0027 24.2 5.7 45 95-139 48-93 (131)
48 1crb_A Cellular retinol bindin 32.7 1E+02 0.0035 23.7 6.2 45 95-139 48-95 (134)
49 1mvf_D MAZE protein, PEMI-like 32.3 37 0.0013 23.8 3.2 31 146-178 13-43 (82)
50 1p6p_A Fatty acid-binding prot 32.2 68 0.0023 24.5 5.0 44 96-139 47-91 (125)
51 1ggl_A Protein (cellular retin 32.2 1.2E+02 0.004 23.4 6.4 45 95-139 48-95 (134)
52 2pp6_A Gifsy-2 prophage ATP-bi 31.9 93 0.0032 23.6 5.5 40 55-97 53-94 (102)
53 1at0_A 17-hedgehog; developmen 31.4 73 0.0025 24.8 5.1 30 56-85 84-119 (145)
54 3rsw_A Fatty acid-binding prot 31.2 1.1E+02 0.0037 24.6 6.2 44 95-138 74-118 (158)
55 2f73_A L-FABP, fatty acid-bind 30.4 1E+02 0.0035 24.4 5.9 44 96-139 70-115 (149)
56 1lpj_A Retinol-binding protein 29.1 92 0.0031 24.0 5.3 45 95-139 48-95 (133)
57 3e0e_A Replication protein A; 29.1 1.3E+02 0.0043 21.7 5.8 54 58-112 2-57 (97)
58 1eal_A Gastrotropin, ileal lip 28.4 1.2E+02 0.0041 23.1 5.8 44 96-139 47-92 (127)
59 1ftp_A Muscle fatty acid bindi 28.3 94 0.0032 24.0 5.2 45 95-139 50-96 (133)
60 2g7b_A Cellular retinoic acid- 26.3 1.3E+02 0.0043 23.3 5.6 45 95-139 49-95 (137)
61 2lba_A BABP protein; ileal bIl 26.0 1.1E+02 0.0037 23.8 5.2 45 95-139 51-97 (136)
62 1d7q_A Translation initiation 24.9 2E+02 0.007 22.8 6.7 43 185-235 32-82 (143)
63 3frn_A Flagellar protein FLGA; 23.4 1.5E+02 0.0051 26.2 6.1 30 95-124 242-271 (278)
64 1at0_A 17-hedgehog; developmen 22.7 1.3E+02 0.0044 23.3 5.1 44 56-99 13-61 (145)
65 3elx_A Ileal bIle acid-binding 22.4 1E+02 0.0035 24.1 4.4 44 96-139 51-96 (138)
66 3vg7_A Fatty acid-binding prot 22.3 1.5E+02 0.005 22.9 5.3 44 96-139 51-96 (132)
67 4h87_A Kanadaptin; FHA domain 21.9 35 0.0012 26.3 1.6 30 210-239 96-127 (130)
68 2vqe_Q 30S ribosomal protein S 20.6 2.4E+02 0.0082 21.2 6.0 54 173-232 6-60 (105)
69 1g6p_A Cold shock protein TMCS 20.5 1.8E+02 0.0062 19.5 4.9 44 133-176 10-54 (66)
70 2jv2_A Putative uncharacterize 20.3 85 0.0029 22.6 3.3 25 163-196 43-67 (83)
No 1
>1yby_A Translation elongation factor P; conserved hypothetical protein, structural genomics, PSI, protein structure initiative; 1.95A {Clostridium thermocellum}
Probab=100.00 E-value=1e-78 Score=530.75 Aligned_cols=207 Identities=26% Similarity=0.441 Sum_probs=174.4
Q ss_pred CCCCCCCCcCccccCcccceecceeeEEcCCCCCccEEEECCeEEEEEEeEEecCCCCCeEEEEEEeeCCCCCeEEEEeC
Q 026237 33 CHRSSGDRDTCLLRFPWSATQQRAVKVNASHVRPGNVIEKSGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFG 112 (241)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~R~~~i~a~dirkG~~I~~dG~py~V~~~~h~KpGKG~A~vriklknL~TG~k~e~tf~ 112 (241)
.||++++..+---+ .|++|+|++|+++++||+|++|++||+||+|++++|+|||||+||+|+|+|||+||+++|.+|+
T Consensus 8 ~~~~~~~~~~~~~~--~~~~~~rg~Mi~a~dlKkG~~I~idG~p~~Vve~~hvKPGKG~A~vr~klknl~TG~~~e~tf~ 85 (215)
T 1yby_A 8 HHHSSGLVPRGSQS--TSLYKKAGLMISAGDFKNGVTFELDGQIFQVIEFQHVKPGKGAAFVRTKLKNIVTGATIEKTFN 85 (215)
T ss_dssp -------------------------CEEGGGCCTTCEEEETTEEEEEEEEEEECCC--CCEEEEEEEETTTCCEEEEEEC
T ss_pred cccccccccCCCcc--hhhhhhCCEEEEhhhccCCCEEEECCEEEEEEEEEEEcCCCCceEEEEEEEECCCCCEEEEEEC
Confidence 35666665443333 3588999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEeeeEEeeEEEEEEEeCCEEEEEeCCCccccccCchhhhhhhhccCCCCEEEEEEECCEEEEEeCCCeEEEEEEE
Q 026237 113 TEEAVERVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKE 192 (241)
Q Consensus 113 s~dkve~v~ve~k~~qylY~Dgd~~~FMD~EtyEQi~v~~~~lgd~~~~L~eg~~v~v~~~dg~~i~v~lP~~V~l~V~e 192 (241)
++|++|.|++++++|||||.|||.|+|||+|||||++||.+.+||+.+||+|||+|++++|+|+||+|+||++|+|+|+|
T Consensus 86 s~ekve~a~verr~~QylY~Dgd~y~FMD~ETyEQi~l~~~~lgd~~~fLkEg~~v~v~~~~g~~i~velP~~V~l~V~e 165 (215)
T 1yby_A 86 PTDKMPKAHIERKDMQYLYNDGDLYYFMDTETFEQLPLGKDKIGDALKFVKENEIVKVLSHKGNVFGIEPPNFVELEVTD 165 (215)
T ss_dssp TTCEECBCCCEEEEEEEEEEETTEEEEECTTTCCEEEEEHHHHTTTTTTCCTTCEEEEEEETTEEEEEECCSEEEEEEEE
T ss_pred CCCEEecceEEEEEEEEEEeCCCEEEEccCCCCeeEEecHHHhhhHHhhCCCCCEEEEEEECCEEEEEECCCEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCcCCCCCceeEEeecCcEEEccccccCCCEEEEECCCCceecC
Q 026237 193 IHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGR 241 (241)
Q Consensus 193 t~p~~kGdT~~~~~K~A~LetG~~v~VP~FI~~Gd~I~V~T~~g~Yv~R 241 (241)
|+|++|||||++++|||+||||++|+||+||++||+|+||||||+|++|
T Consensus 166 teP~vkGdTa~~~~KpA~leTG~~v~VP~FI~~Gd~I~VdT~~g~Y~~R 214 (215)
T 1yby_A 166 TEPGFKGDTATGATKPAIVETGASIKVPLFVNKGDIIRIDTRTGEYMER 214 (215)
T ss_dssp C-------CCSCCEEEEEETTSCEEEEETTCCTTCEEEEETTTTEEEEE
T ss_pred cCCCccccccCCCCccEEEeCCcEEEeCCcEeCCCEEEEECCCCeEecc
Confidence 9999999999999999999999999999999999999999999999998
No 2
>1ueb_A EF-P, TT0860, elongation factor P; beta barrel, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.65A {Thermus thermophilus} SCOP: b.34.5.2 b.40.4.5 b.40.4.5 PDB: 3huw_V 3huy_V
Probab=100.00 E-value=1.6e-75 Score=500.48 Aligned_cols=183 Identities=28% Similarity=0.584 Sum_probs=181.7
Q ss_pred eEEcCCCCCccEEEECCeEEEEEEeEEecCCCCCeEEEEEEeeCCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEEeCCEE
Q 026237 58 KVNASHVRPGNVIEKSGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDTA 137 (241)
Q Consensus 58 ~i~a~dirkG~~I~~dG~py~V~~~~h~KpGKG~A~vriklknL~TG~k~e~tf~s~dkve~v~ve~k~~qylY~Dgd~~ 137 (241)
|+++++||+|++|++||+||+|++++|+|||||+||+|+|+|||+||+++|.+|+++|++|.|+++++++||||.|||.|
T Consensus 1 mi~a~dlkkG~~i~~dg~p~~Vve~~~~KpGKG~A~vr~klknl~TG~~~e~tf~s~~kve~~~ver~~~qylY~dgd~~ 80 (184)
T 1ueb_A 1 MISVTDLRPGTKVKMDGGLWECVEYQHQKLGRGGAKVVAKFKNLETGATVERTFNSGEKLEDIYVETRELQYLYPEGEEM 80 (184)
T ss_dssp CEEGGGCCTTCEEEETTEEEEEEEEEEEEETTSCCEEEEEEEESSSSCEEEEEEETTCEEEECCEEEEEEEEEEEETTEE
T ss_pred CcchhhcCCCCEEEECCEEEEEEEEEEeeCCCCceEEEEEEEECCCCCEEEEEECCCCEEEeeeEEEEEEEEEEeCCCEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCccccccCchhhhhhhhccCCCCEEEEEEECCEEEEEeCCCeEEEEEEEecCCCCCcCCCCCceeEEeecCcEE
Q 026237 138 FVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTV 217 (241)
Q Consensus 138 ~FMD~EtyEQi~v~~~~lgd~~~~L~eg~~v~v~~~dg~~i~v~lP~~V~l~V~et~p~~kGdT~~~~~K~A~LetG~~v 217 (241)
+|||+|||||++||.+.+||+ +||+|||+|++++|+|+||+|+||++|+|+|+||+|++|||||++++|||+||||++|
T Consensus 81 ~FMD~etyeq~~l~~~~lgd~-~~L~eg~~v~v~~~~g~~i~v~lP~~V~l~V~~tep~~kGdta~~~~KpA~letG~~v 159 (184)
T 1ueb_A 81 VFMDLETYEQFAVPRSRVVGA-EFFKEGMTALGDMYEGQPIKVTPPTVVELKVVDTPPGVRGDTVSGGSKPATLETGAVV 159 (184)
T ss_dssp EEEETTTCCEEEEEGGGBTTG-GGCCTTCEEEEEEETTEEEEEECCSEEEEEEEECCSSSCCSSSSCSEEEEEETTSCEE
T ss_pred EEeeCCCceeEEcCHHHcChh-hhcCCCCEEEEEEECCEEEEEECCCEEEEEEEEcCCCCcccccCCCCccEEEcCCCEE
Confidence 999999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred EccccccCCCEEEEECCCCceecC
Q 026237 218 MVPSYLEIGEEIFINPQDDSYIGR 241 (241)
Q Consensus 218 ~VP~FI~~Gd~I~V~T~~g~Yv~R 241 (241)
+||+||++||+|+||||+|+|++|
T Consensus 160 ~VP~fi~~Gd~I~vdT~~g~Y~~R 183 (184)
T 1ueb_A 160 QVPLFVEPGEVIKVDTRTGEYVGR 183 (184)
T ss_dssp EEETTCCTTCEEEEETTTTEEEEE
T ss_pred EeCCcCcCCCEEEEECCCCeEecc
Confidence 999999999999999999999998
No 3
>3oyy_A EF-P, elongation factor P; translation; 1.75A {Pseudomonas aeruginosa}
Probab=100.00 E-value=7.3e-75 Score=498.89 Aligned_cols=184 Identities=23% Similarity=0.426 Sum_probs=180.6
Q ss_pred eeEEcCCCCCccEEEECCeEEEEEEeEEecCCCCCeEEEEEEeeCCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEEeCCE
Q 026237 57 VKVNASHVRPGNVIEKSGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDT 136 (241)
Q Consensus 57 ~~i~a~dirkG~~I~~dG~py~V~~~~h~KpGKG~A~vriklknL~TG~k~e~tf~s~dkve~v~ve~k~~qylY~Dgd~ 136 (241)
+|+++++||+|++|++||+||+|++++|+|||||+|++|+++|||+||+++|.+|+++|++|.|+++++++||||.|||.
T Consensus 3 ~m~~a~dlk~G~~I~~dg~p~~Vve~~~~KpGKG~A~vr~klknl~tG~~~e~tf~s~ekve~~~ver~~~qylY~dgd~ 82 (191)
T 3oyy_A 3 SMKTAQEFRAGQVANINGAPWVIQKAEFNKSGRNAAVVKMKLKNLLTGAGTETVFKADDKLEPIILDRKEVTYSYFADPL 82 (191)
T ss_dssp CCEEGGGCCTTCEEEETTEEEEEEEEEEECCTTSCCEEEEEEEETTTCCEEEEEEETTCEEEECCCEEEEEEEEEECSSS
T ss_pred ccccHHhCCCCCEEEECCEEEEEEEEEeeeCCCCcEEEEEEEEECCCCCEEEEEeCCCCEEEeeeEEEEEEEEEEecCCE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCccccccCchhhhhhhhccCCCCE--EEEEEECCEEEEEeCCCeEEEEEEEecCCCCCcCCCCCceeEEeecC
Q 026237 137 AFVIESETFEQLEVPLDVFGKAGAYLQEGMK--VWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNG 214 (241)
Q Consensus 137 ~~FMD~EtyEQi~v~~~~lgd~~~~L~eg~~--v~v~~~dg~~i~v~lP~~V~l~V~et~p~~kGdT~~~~~K~A~LetG 214 (241)
|+||| |||||++||.+.+||+.+||+|||+ |++++|||+||+|+||++|+|+|+||+|++|||||++++|||+||||
T Consensus 83 ~~FMD-etyEq~~l~~~~lgd~~~~L~eg~~~~v~v~~~~~~~i~v~lP~~V~l~V~~tep~~kGdta~~~~KpA~letG 161 (191)
T 3oyy_A 83 YVFMD-SEFNQYEIEKDDLEGVLTFIEDGMTDICEAVFYNDKVISVELPTTIVRQIAYTEPAVRGDTSGKVMKTARLNNG 161 (191)
T ss_dssp EEEEE-TTCCEEEECGGGCTTTGGGCCTTCCCCEEEEEETTEEEEEECCSEEEEEEEEECCCCSCCCC--CEEEEEETTS
T ss_pred EEEEe-cChhheeCChHHhhhHHhhCcCCCEeEEEEEEECCEEEEEECCCEEEEEEEEcCCCccccccCCCCceEEEeCC
Confidence 99999 9999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred cEEEccccccCCCEEEEECCCCceecC
Q 026237 215 VTVMVPSYLEIGEEIFINPQDDSYIGR 241 (241)
Q Consensus 215 ~~v~VP~FI~~Gd~I~V~T~~g~Yv~R 241 (241)
++|+||+||++||+|+||||||+|++|
T Consensus 162 ~~v~VP~fi~~Gd~I~VdT~~g~Y~~R 188 (191)
T 3oyy_A 162 AELQVSAFCEIGDSIEIDTRTGEYKSR 188 (191)
T ss_dssp CEEEEETTCCTTCEEEEETTTTEEEEE
T ss_pred CEEEeCCeeeCCCEEEEECCCCeEhhh
Confidence 999999999999999999999999998
No 4
>3tre_A EF-P, elongation factor P; protein synthesis, translation; 2.90A {Coxiella burnetii}
Probab=100.00 E-value=1e-75 Score=504.27 Aligned_cols=186 Identities=25% Similarity=0.413 Sum_probs=128.5
Q ss_pred eeeEEcCCCCCccEEEECCeEEEEEEeEEecCCCCCeEEEEEEeeCCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEEeCC
Q 026237 56 AVKVNASHVRPGNVIEKSGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTEND 135 (241)
Q Consensus 56 ~~~i~a~dirkG~~I~~dG~py~V~~~~h~KpGKG~A~vriklknL~TG~k~e~tf~s~dkve~v~ve~k~~qylY~Dgd 135 (241)
++|+++++||+|++|++||+||+|++++|+|||||+||+|+++|||+||+++|.+|+++|++|.|+++++++||||.|||
T Consensus 4 m~m~~a~dlkkG~~I~~dG~p~~Vve~~~~KpGKG~A~vr~klknl~tG~~~e~tf~s~ekve~~~ver~~~qylY~dgd 83 (191)
T 3tre_A 4 MATHSTNEFRGGLKVMVDGDPCSIIDNEFVKPGKGQAFNRVKFRNLKTGRVLERTFKSGETLPAADVVEVEMQYLYNDGE 83 (191)
T ss_dssp --CEEGGGCCTTCEEEETTEEEEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEETTCEECBCCEEEEEEEEEEECSS
T ss_pred eEEEEHHHCCCCCEEEECCEEEEEEEEEEeeCCCCceEEEEEEEECCCCCEEEEEeCCCCEEEeceEEEEEEEEEEEcCC
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCccccccCchhhhhhhhccCCCCEEEEEEECCEEEEEeCCCeEEEEEEEecCCCCCcCCCCCceeEEeecCc
Q 026237 136 TAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGV 215 (241)
Q Consensus 136 ~~~FMD~EtyEQi~v~~~~lgd~~~~L~eg~~v~v~~~dg~~i~v~lP~~V~l~V~et~p~~kGdT~~~~~K~A~LetG~ 215 (241)
.|+|||+|||||++||.+.+||+.+||+|||+|++++|||+||+|+||++|+|+|+||+|++|||||++++|||+||||+
T Consensus 84 ~~~FMD~etyEq~~l~~~~lgd~~~~L~eg~~v~v~~~~~~~i~v~lP~~V~l~V~~tep~~kGdta~~~~KpA~letG~ 163 (191)
T 3tre_A 84 FWHFMTSENYEQHAASKEAVAEAKQWLKEEALCMVTMWNGVPLSVEPPNFVELKITETEPGVRGDTATGGTKRAKLETGA 163 (191)
T ss_dssp CEEEEESSSCCEEEECHHHHGGGGGGCCTTCEEEEEEETTEEEEEECCSCC-----------------------------
T ss_pred cEEEccCCchHheecchhHhhhHHhhCCCCCEEEEEEECCEEEEEECCCEEEEEEEEcCCCCcccccCCCcCeEEEeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccccccCCCEEEEECCCCceecC
Q 026237 216 TVMVPSYLEIGEEIFINPQDDSYIGR 241 (241)
Q Consensus 216 ~v~VP~FI~~Gd~I~V~T~~g~Yv~R 241 (241)
+|+||+||++||+|+||||||+|++|
T Consensus 164 ~v~VP~fi~~Gd~I~VdT~~g~Y~~R 189 (191)
T 3tre_A 164 VVRVPLFLNEGEIIKVDTRRGEYVSR 189 (191)
T ss_dssp --------------------------
T ss_pred EEEeCCeEcCCCEEEEECCCCeEecc
Confidence 99999999999999999999999998
No 5
>3a5z_B EF-P, elongation factor P; aminoacyl-tRNA synthetase paralog, translation, tRNA, lysyl- synthetase, structural genomics, NPPSFA; HET: KAA; 2.50A {Escherichia coli}
Probab=100.00 E-value=1.1e-75 Score=503.95 Aligned_cols=185 Identities=28% Similarity=0.450 Sum_probs=132.8
Q ss_pred eeEEcCCCCCccEEEECCeEEEEEEeEEecCCCCCeEEEEEEeeCCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEEeCCE
Q 026237 57 VKVNASHVRPGNVIEKSGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDT 136 (241)
Q Consensus 57 ~~i~a~dirkG~~I~~dG~py~V~~~~h~KpGKG~A~vriklknL~TG~k~e~tf~s~dkve~v~ve~k~~qylY~Dgd~ 136 (241)
+.+++++||+|++|++||+||+|++++|+|||||+||+|+|+|||+||+++|.+|+++|++|.|+++++++||||.|||.
T Consensus 5 ~~~~a~dlk~G~~I~~dg~p~~Vve~~~~KpGKG~A~vr~klknl~TG~~~e~tf~s~~kve~~~ver~~~qylY~dgd~ 84 (191)
T 3a5z_B 5 ATYYSNDFRAGLKIMLDGEPYAVEASEFVKPGKGQAFARVKLRRLLTGTRVEKTFKSTDSAEGADVVDMNLTYLYNDGEF 84 (191)
T ss_dssp -CEESTTCCTTCEEEETTEEEEEEEEEEECCTTCCCEEEEEEEEGGGTEEEEEEEETTCEEEECCEEEECCEEEEECSSC
T ss_pred ceeeHHHCCCCCEEEECCEEEEEEEEEEEcCCCCcEEEEEEEEECCCCCEEEEEECCCCEEEeeEEEEEEEEEEEeCCCE
Confidence 34799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCccccccCchhhhhhhhccCCCCEEEEEEECCEEEEEeCCCeEEEEEEEecCCCCCcCCCCCceeEEeecCcE
Q 026237 137 AFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVT 216 (241)
Q Consensus 137 ~~FMD~EtyEQi~v~~~~lgd~~~~L~eg~~v~v~~~dg~~i~v~lP~~V~l~V~et~p~~kGdT~~~~~K~A~LetG~~ 216 (241)
|+|||+|||||++||.+.+||+.+||+|||+|++++|+|+||+|+||++|+|+|+||+|++|||||++++|||+||||++
T Consensus 85 ~~FMD~etyeQ~~l~~~~lgd~~~~l~e~~~v~v~~~~g~~i~v~lP~~V~l~V~~tep~~kGdta~~~~KpA~letG~~ 164 (191)
T 3a5z_B 85 WHFMNNETFEQLSADAKAIGDNAKWLLDQAECIVTLWNGQPISVTPPNFVELEIVDTDPGLKGDTAGTGGKPATLSTGAV 164 (191)
T ss_dssp EEEECTTTCCEEEECHHHHCTTTTTCCSSEECEEEEETTEEEEEECCSCCCCCCC-------------------------
T ss_pred EEEeeCCCCeEEEccHHHhhhHHhhcCCCCEEEEEEECCEEEEEECCCEEEEEEEEcCCCCcccccCCCCccEEEeCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccccccCCCEEEEECCCCceecC
Q 026237 217 VMVPSYLEIGEEIFINPQDDSYIGR 241 (241)
Q Consensus 217 v~VP~FI~~Gd~I~V~T~~g~Yv~R 241 (241)
|+||+||++||+|+||||+|+|++|
T Consensus 165 v~VP~fi~~Gd~I~VdT~~g~Y~~R 189 (191)
T 3a5z_B 165 VKVPLFVQIGEVIKVDTRSGEYVSR 189 (191)
T ss_dssp -------------------------
T ss_pred EEeCCcEeCCCEEEEECCCCeEeec
Confidence 9999999999999999999999998
No 6
>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} SCOP: b.34.5.2 b.40.4.5
Probab=100.00 E-value=3.2e-41 Score=275.65 Aligned_cols=125 Identities=19% Similarity=0.248 Sum_probs=120.9
Q ss_pred eeeEEcCCCCCccEEEECCeEEEEEEeEEecCCCC-CeEEEEEEeeCCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEEeC
Q 026237 56 AVKVNASHVRPGNVIEKSGKMYQVIDAEHKQRGRG-GAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTEN 134 (241)
Q Consensus 56 ~~~i~a~dirkG~~I~~dG~py~V~~~~h~KpGKG-~A~vriklknL~TG~k~e~tf~s~dkve~v~ve~k~~qylY~Dg 134 (241)
...+++++||+|++|++||+||+|++++|+||||| +|++|+++|||+||+++|.+|++++++|.|+++++++||||.||
T Consensus 6 t~~i~~~~lrkG~~i~~~g~p~~Vve~~~~KpGKgG~A~vr~k~knl~tG~~~e~tf~s~~kve~~~ve~~~~qylY~dg 85 (136)
T 1bkb_A 6 TKYVEAGELKEGSYVVIDGEPCRVVEIEKSKTGKHGSAKARIVAVGVFDGGKRTLSLPVDAQVEVPIIEKFTAQILSVSG 85 (136)
T ss_dssp CEEEEGGGCCTTCEEEETTEEEEEEEEEEECCSTTSCCEEEEEEEETTTCCEEEEEEETTSEEEECCCEEEEEEEEEECS
T ss_pred EEEEEHHHccCCCEEEECCEEEEEEEEEEecCCCCCceEEEEEEEECCCCCeEEEEEcCCCEeeeceEEEEEEEEEEecC
Confidence 56789999999999999999999999999999995 99999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCccccccCchh-hhhhhhccCCCCEEEEEEECCEEEEE
Q 026237 135 DTAFVIESETFEQLEVPLDV-FGKAGAYLQEGMKVWLQLYDGRALSG 180 (241)
Q Consensus 135 d~~~FMD~EtyEQi~v~~~~-lgd~~~~L~eg~~v~v~~~dg~~i~v 180 (241)
+.|+|||+|||||++|+.+. +|++.+||+||++|+|++|+|++.-+
T Consensus 86 ~~~~fMD~etyeq~~l~~~~~~gd~~~~l~e~~~v~v~~~~g~~~~~ 132 (136)
T 1bkb_A 86 DVIQLMDMRDYKTIEVPMKYVEEEAKGRLAPGAEVEVWQILDRYKII 132 (136)
T ss_dssp SEEEEEETTTCCEEEEEGGGBCHHHHTTCCTTCEEEEEEETTEEEEE
T ss_pred CEEEEEeCCCCeEEEeccccchhHHHhhCCCCCEEEEEEECCEEEEE
Confidence 99999999999999999999 99999999999999999999998644
No 7
>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii} SCOP: b.34.5.2 b.40.4.5
Probab=100.00 E-value=2.7e-40 Score=270.97 Aligned_cols=122 Identities=25% Similarity=0.318 Sum_probs=118.4
Q ss_pred eeEEcCCCCCccEEEECCeEEEEEEeEEecCCC-CCeEEEEEEeeCCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEEeCC
Q 026237 57 VKVNASHVRPGNVIEKSGKMYQVIDAEHKQRGR-GGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTEND 135 (241)
Q Consensus 57 ~~i~a~dirkG~~I~~dG~py~V~~~~h~KpGK-G~A~vriklknL~TG~k~e~tf~s~dkve~v~ve~k~~qylY~Dgd 135 (241)
..+++++||+|++|++||+||+|++++|+|||| |+|++|+++|||+||+++|.+|++++++|.|+++++++||||.||+
T Consensus 5 ~~i~a~~lkkG~~i~~~g~p~~Vve~~~~KpGKhG~A~vr~k~knl~tG~~~e~tf~s~~~ve~~~ve~~~~qylY~dg~ 84 (138)
T 1iz6_A 5 TKVQVSKLKPGRYIIIDDEPCRIVNITVSSPGKHGSAKARIEAVGIFDGKVRSIVKPTSAEVDVPIIDKKTAQVIAITPD 84 (138)
T ss_dssp EEEEGGGCCTTSEEEETTEEEEEEEEEECCCCTTSCCEEEEEEEETTTCCEEEEEEETTSEEEEECCEEEEEEEEEECSS
T ss_pred EEEEHHHccCCCEEEECCEEEEEEEEEeecCCCCCceEEEEEEEECCCCCEEEEEecCCCEEeeceEEEEEEEEEEeCCC
Confidence 357899999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCcccccc--CchhhhhhhhccCCCCEEEEEEECCEEE
Q 026237 136 TAFVIESETFEQLEV--PLDVFGKAGAYLQEGMKVWLQLYDGRAL 178 (241)
Q Consensus 136 ~~~FMD~EtyEQi~v--~~~~lgd~~~~L~eg~~v~v~~~dg~~i 178 (241)
.|+|||+|||||++| |.+.+|++.+||+||++|+|+++.|+..
T Consensus 85 ~~~fMD~etyeq~~l~~~~~~lgd~~~~l~e~~~V~v~~~~G~~~ 129 (138)
T 1iz6_A 85 TVQIMDMETYETFEVPIDTGVADEIRDQLKEGINVEYWETLGRIK 129 (138)
T ss_dssp EEEEECTTTCCEEEEEHHHHBCGGGTTTCCTTCEEEEEEETTEEE
T ss_pred EEEEEeCCCCceEEeeCCHHHHHHHHHhCCCCCEEEEEEECCcEE
Confidence 999999999999999 8899999999999999999999999865
No 8
>3cpf_A Eukaryotic translation initiation factor 5A-1; structural genomics consortium, leukemia, apoptosis, SGC, HY initiation factor, nucleus; 2.50A {Homo sapiens}
Probab=100.00 E-value=1.2e-39 Score=267.14 Aligned_cols=118 Identities=13% Similarity=0.190 Sum_probs=111.6
Q ss_pred eeEEcCCCCCccEEEECCeEEEEEEeEEecCCCC-CeEEEEEEeeCCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEEeCC
Q 026237 57 VKVNASHVRPGNVIEKSGKMYQVIDAEHKQRGRG-GAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTEND 135 (241)
Q Consensus 57 ~~i~a~dirkG~~I~~dG~py~V~~~~h~KpGKG-~A~vriklknL~TG~k~e~tf~s~dkve~v~ve~k~~qylY~Dgd 135 (241)
..+++++||+|++|++||+||+|++++|+||||| +|++|+++|||+||+++|.+|++++++|.|+++++++||||.||+
T Consensus 5 ~~i~~~~lrkG~~i~~~g~p~~Vve~~~~KpGKgG~A~vr~k~knl~TG~~~e~tf~s~~kve~~~v~~~~~qyly~dg~ 84 (138)
T 3cpf_A 5 FPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQDG 84 (138)
T ss_dssp EEEEGGGCCTTSEEEETTEEEEEEEEEEECC----CCEEEEEEEETTTCCEEEEEEETTSEEEEECCEEEEEEEEEEETT
T ss_pred EEEEHHHCcCCCEEEECCEEEEEEEEEeccCCCCccEEEEEEEEECCCCCEEEEEeCCCCEEEeeEEEEEEEEEEEecCC
Confidence 5688999999999999999999999999999995 999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCccccc--cCchhhhhhh-hccCCCCEEEEEEEC
Q 026237 136 TAFVIESETFEQLE--VPLDVFGKAG-AYLQEGMKVWLQLYD 174 (241)
Q Consensus 136 ~~~FMD~EtyEQi~--v~~~~lgd~~-~~L~eg~~v~v~~~d 174 (241)
.|+|||+|||||++ +|.+.+|++. +||+||++|.|.+|.
T Consensus 85 ~~~fMD~etyeq~~l~l~~~~lgd~~~~~l~eg~~v~V~~~~ 126 (138)
T 3cpf_A 85 YLSLLQDSGEVREDLRLPEGDLGKEIEQKYDCGEEILITVLS 126 (138)
T ss_dssp EEEEECTTSCEECCSBCCSHHHHHHHHHHHHHTCCCEEEEEE
T ss_pred EEEEEcCCCCeEeeecCCHHHHHHHHHHHhhCCCEEEEEEEh
Confidence 99999999999999 7999999999 999999999998884
No 9
>2eif_A IF-5A, protein (eukaryotic translation initiation factor; EIF-5A, OB-fold, structural genomics, BSGC STRU funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: b.34.5.2 b.40.4.5 PDB: 1eif_A
Probab=100.00 E-value=8.9e-39 Score=261.30 Aligned_cols=118 Identities=21% Similarity=0.256 Sum_probs=115.0
Q ss_pred eEEcCCCCCccEEEECCeEEEEEEeEEecCCC-CCeEEEEEEeeCCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEEeCCE
Q 026237 58 KVNASHVRPGNVIEKSGKMYQVIDAEHKQRGR-GGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDT 136 (241)
Q Consensus 58 ~i~a~dirkG~~I~~dG~py~V~~~~h~KpGK-G~A~vriklknL~TG~k~e~tf~s~dkve~v~ve~k~~qylY~Dgd~ 136 (241)
.+++++||+|++|++||+||+|++++|+|||| |+|++|+++|||+||+++|.+|++++++|.|+++++++||||.||+.
T Consensus 10 ~i~~~~lr~G~~I~~~g~p~~V~e~~~~KpGKhG~A~vr~k~knl~tG~~~e~tf~s~~~ve~~~ve~~~~qyly~dg~~ 89 (136)
T 2eif_A 10 QVNVGSLKVGQYVMIDGVPCEIVDISVSKPGKHGGAKARVVGIGIFEKVKKEFVAPTSSKVEVPIIDRRKGQVLAIMGDM 89 (136)
T ss_dssp EEEGGGCCTTSEEEETTEEEEEEEEEECCCCSSSCCEEEEEEEESSSCCEEEEEEETTSEEEEECEEEEEEEEEEEETTE
T ss_pred EEEHHHCcCCCEEEECCEEEEEEEEEeecCCCCCceEEEEEEEEcCCCCeEEEEecCCCEeccccEeeeEEEEEEecCCE
Confidence 46899999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCccccccCchhhhhhhhccCCCCEEEEEEECCEEE
Q 026237 137 AFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRAL 178 (241)
Q Consensus 137 ~~FMD~EtyEQi~v~~~~lgd~~~~L~eg~~v~v~~~dg~~i 178 (241)
|+|||+|||||++|+.+ |++.+ |+||++|+|++|+|++.
T Consensus 90 ~~fMD~etyeq~~l~~~--gd~~~-l~e~~~v~v~~~~G~~~ 128 (136)
T 2eif_A 90 VQIMDLQTYETLELPIP--EGIEG-LEPGGEVEYIEAVGQYK 128 (136)
T ss_dssp EEEEETTTCCEEEEECC--SCCTT-CSTTCEEEEEEETTEEE
T ss_pred EEEEeCCCceEEEecCC--Cchhh-CCCCCEEEEEEECCEEE
Confidence 99999999999999999 89999 99999999999999975
No 10
>1x6o_A Eukaryotic initiation factor 5A; SGPP, structural genomics, PSI; 1.60A {Leishmania braziliensis} SCOP: b.34.5.2 b.40.4.5 PDB: 1xtd_A
Probab=100.00 E-value=7.7e-37 Score=258.98 Aligned_cols=118 Identities=20% Similarity=0.327 Sum_probs=111.1
Q ss_pred eeEEcCCCCCccEEEECCeEEEEEEeEEecCCC-CCeEEEEEEeeCCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEEeCC
Q 026237 57 VKVNASHVRPGNVIEKSGKMYQVIDAEHKQRGR-GGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTEND 135 (241)
Q Consensus 57 ~~i~a~dirkG~~I~~dG~py~V~~~~h~KpGK-G~A~vriklknL~TG~k~e~tf~s~dkve~v~ve~k~~qylY~Dgd 135 (241)
..+++++||+|++|++||+||+|++++|+|||| |+|+||+++|||+||+++|.+|+++++++.|.|++++|||||.|||
T Consensus 29 ~~i~a~dlrkG~~I~idG~p~~Vve~~~~KpGKgG~A~vr~k~kni~TG~k~E~tf~s~~kve~~~Ver~~~QyLY~dgd 108 (174)
T 1x6o_A 29 YPLAAGALKKGGYVCINGRPCKVIDLSVSKTGKHGHAKVSIVATDIFTGNRLEDQAPSTHNVEVPFVKTYTYSVLDIQAN 108 (174)
T ss_dssp EEEEGGGCCTTCEEEETTEEEEEEEEEECCC----CCEEEEEEEETTTCCEEEEEEETTSEEEEECCEEEEEEEEEEECC
T ss_pred EEEEHHHccCCCEEEECCEEEEEEEEEecCCCCCCceEEEEEEEECCCCCEEEEEeCCCCEEEeeEEEEEEEEEEEecCC
Confidence 667899999999999999999999999999999 5999999999999999999999999999999999999999999999
Q ss_pred -------EEEEEeCCCcccccc--Cch-hhhhh-hhccCCCCEEEEEEEC
Q 026237 136 -------TAFVIESETFEQLEV--PLD-VFGKA-GAYLQEGMKVWLQLYD 174 (241)
Q Consensus 136 -------~~~FMD~EtyEQi~v--~~~-~lgd~-~~~L~eg~~v~v~~~d 174 (241)
.|+|||+|+|||+.| |.+ .+|++ .+||+||++|.|.+|.
T Consensus 109 ~~~~~~g~~~fMD~etyeq~~l~~p~~~~lgd~i~~~l~eg~~v~V~~~~ 158 (174)
T 1x6o_A 109 EDPSLPAHLSLMDDEGESREDLDMPPDPALATQIKEQFDSGKDVLVVVVS 158 (174)
T ss_dssp SSTTSCCEEEEECTTSCEECCCBCCSCHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred cccccccEEEEEcCCCceEEEeeCCchhhHHHHHHHHhhCCCEEEEEEEe
Confidence 999999999999999 777 89999 8999999999999884
No 11
>3er0_A Eukaryotic translation initiation factor 5A-2; yeast, low resolution, acetylation, hypusine, phosphoprotein, protein biosynthesis; 3.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-37 Score=261.41 Aligned_cols=118 Identities=16% Similarity=0.273 Sum_probs=114.0
Q ss_pred eeEEcCCCCCccEEEECCeEEEEEEeEEecCCC-CCeEEEEEEeeCCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEEeCC
Q 026237 57 VKVNASHVRPGNVIEKSGKMYQVIDAEHKQRGR-GGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTEND 135 (241)
Q Consensus 57 ~~i~a~dirkG~~I~~dG~py~V~~~~h~KpGK-G~A~vriklknL~TG~k~e~tf~s~dkve~v~ve~k~~qylY~Dgd 135 (241)
..+++++||+|++|++||+||+|++++|+|||| |+|++|+++|||+||+++|.+|+++++++.|+|+++++||||.||+
T Consensus 29 ~pi~a~dlrkG~~I~idG~p~~Vve~~~~KpGKHG~A~vr~k~knl~TG~k~E~tf~s~~kve~~~ver~~~QyLY~dg~ 108 (167)
T 3er0_A 29 YPMQCSALRKNGFVVIKSRPCKIVDMSTSKTGKHGHAKVHLVAIDIFTGKKLEDLSPSTHNMEVPVVKRNEYQLLDIDDG 108 (167)
T ss_dssp EEEETTTCCTTCEEEETTEEEEEEEEEEECCSSSSCCEEEEEEEESSSCCCEEEEEESSSEEEECCCCEEEEECCCCTTT
T ss_pred EEEEHHHccCCCEEEECCEEEEEEEEEEeCCCCcCceEEEEEEEEcCCCCEEEEEEcCCCccccceEEEeeEEEEEEcCC
Confidence 567899999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred EEEEEe--CCCccccccCchhhhhhh-hccCCCCEEEEEEEC
Q 026237 136 TAFVIE--SETFEQLEVPLDVFGKAG-AYLQEGMKVWLQLYD 174 (241)
Q Consensus 136 ~~~FMD--~EtyEQi~v~~~~lgd~~-~~L~eg~~v~v~~~d 174 (241)
.|+||| .|||||+.||++.+|++. .||+||++|.|++|.
T Consensus 109 ~~~FMD~~~etyeqi~l~~~~lgd~i~~~l~eg~~v~V~~~~ 150 (167)
T 3er0_A 109 FLSLMNMDGDTKDDVKAPEGELGDSLQTAFDEGKDLMVTIIS 150 (167)
T ss_dssp TCCCCCSSSCCCSCCCCCCSSHHHHHHHTTSSCCCCEEEEEE
T ss_pred EEEEEeCCCCeeEEEEcCHHHHHHHHHHHhhCCCEEEEEEEh
Confidence 999999 899999999999999987 789999999998884
No 12
>3hks_A EIF-5A-2, eukaryotic translation initiation factor 5A-2; beta barrel, alternative splicing, hypusine, protein biosynthesis; 2.30A {Arabidopsis thaliana}
Probab=100.00 E-value=1.1e-35 Score=250.47 Aligned_cols=118 Identities=14% Similarity=0.175 Sum_probs=110.3
Q ss_pred eeEEcCCCCCccEEEECCeEEEEEEeEEecCCC-CCeEEEEEEeeCCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEEeC-
Q 026237 57 VKVNASHVRPGNVIEKSGKMYQVIDAEHKQRGR-GGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTEN- 134 (241)
Q Consensus 57 ~~i~a~dirkG~~I~~dG~py~V~~~~h~KpGK-G~A~vriklknL~TG~k~e~tf~s~dkve~v~ve~k~~qylY~Dg- 134 (241)
.-+++++||+|++|++||+||+|++++|+|||| |+|+||+++|||+||+++|.+|++++++|.|.|++++|||||.|+
T Consensus 27 ~pi~~~dlrkG~~I~idG~P~~Vve~~~~KpGKhG~A~vr~k~knl~TGk~~E~tf~s~~kve~~~ver~~~QyLY~d~d 106 (167)
T 3hks_A 27 YPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITED 106 (167)
T ss_dssp EEEEGGGCCTTSEEEETTEEEEEEEEEEECSSTTCCCEEEEEEEETTTCCEEEEEEETTSEEEEECCEEEEEEEEEECTT
T ss_pred EEEEHHHccCCCEEEECCEEEEEEEEEEeCCCCCCceEEEEEEEEcCCCCEEEEEEcCCCEEEeeeEEEEEEEEEEECCC
Confidence 567899999999999999999999999999999 999999999999999999999999999999999999999999965
Q ss_pred CEEEEEeCCCcccc--ccCch-hhhhhh-hccCCCCEEEEEEEC
Q 026237 135 DTAFVIESETFEQL--EVPLD-VFGKAG-AYLQEGMKVWLQLYD 174 (241)
Q Consensus 135 d~~~FMD~EtyEQi--~v~~~-~lgd~~-~~L~eg~~v~v~~~d 174 (241)
+.|+|||+|||||+ .||.+ .+++.+ .||+||++|.|.+|+
T Consensus 107 ~~~~fMD~etyeQ~~l~lp~~~~lg~~i~~~l~eG~~v~V~v~~ 150 (167)
T 3hks_A 107 GFVSLLTDSGGTKDDLKLPTDDGLTAQMRLGFDEGKDIVVSVMS 150 (167)
T ss_dssp SBEEEECTTSCEECCCBCCSCHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred CEEEEEcCCCceEEEEecCchHHHHHHHHHHhhCCCEEEEEEEe
Confidence 68999999999996 56677 888876 899999999998885
No 13
>1khi_A HEX1; membrane sealing, peroxisomal target, structural protein; 1.78A {Neurospora crassa} SCOP: b.34.5.2 b.40.4.5
Probab=99.60 E-value=1.2e-14 Score=122.77 Aligned_cols=116 Identities=14% Similarity=0.139 Sum_probs=97.9
Q ss_pred eeEEcCCCCCccEEEECCeEEEEEEeEEe-cCCCCCeEEEEEEeeCCCCCeEEEEeCCC--------CcEEeeeEEeeEE
Q 026237 57 VKVNASHVRPGNVIEKSGKMYQVIDAEHK-QRGRGGAMMQMELRDIDTGNKVSLRFGTE--------EAVERVFVEDKSF 127 (241)
Q Consensus 57 ~~i~a~dirkG~~I~~dG~py~V~~~~h~-KpGKG~A~vriklknL~TG~k~e~tf~s~--------dkve~v~ve~k~~ 127 (241)
.-+++++||+|.+|+++|+||+|+++..+ ||||= ++...||+||+|.|...+++ +++++|.++ ++
T Consensus 33 ~p~q~~~LrkG~yv~IkGrPCKIveiStS~KtGKH----~ivaiDIFTgkK~edi~Pss~p~p~~~~hnm~VPvVk--~y 106 (176)
T 1khi_A 33 VTIPCHHIRLGDILILQGRPCQVIRISTSAATGQH----RYLGVDLFTKQLHEESSFVSNPAPSVVVQTMLGPVFK--QY 106 (176)
T ss_dssp EEEEGGGCCTTCEEEETTEEEEEEEEEECTTTCCE----EEEEEETTTCCEEEEECCEECSSTTCCEEEEEEECCE--EE
T ss_pred EEEEhhheeeCCEEEECCeeeEEEEEEccCCCCce----EEEEEEccCCcEeEEeccccCCCcccccceeccceeE--EE
Confidence 45789999999999999999999999999 89994 89999999999999999998 899999996 99
Q ss_pred EEEEEeCCEEEEEeCCCcccccc--Cc-hhhhhh-hhccCCCCE---EEEEEECCEEE
Q 026237 128 TCLYTENDTAFVIESETFEQLEV--PL-DVFGKA-GAYLQEGMK---VWLQLYDGRAL 178 (241)
Q Consensus 128 qylY~Dgd~~~FMD~EtyEQi~v--~~-~~lgd~-~~~L~eg~~---v~v~~~dg~~i 178 (241)
|+|..+++...+||.++|+...| |. ..|++. ...+.+|.+ |+++-..|+-.
T Consensus 107 QlldI~dg~lsLMd~~G~~k~dl~lp~~~~l~~~i~~~f~~G~~~~~V~v~~amG~e~ 164 (176)
T 1khi_A 107 RVLDMQDGSIVAMTETGDVKQNLPVIDQSSLWNRLQKAFESGRGSVRVLVVSDHGREM 164 (176)
T ss_dssp EEEEEETTEEEEECTTCCEEEEEEBCCSTTHHHHHHHHHTTTGGGEEEEEEEETTEEE
T ss_pred EEEEEcCCeEEEEeCCCCEEeeeEccchHHHHHHHHHHhhCCCceEEEEEEeECCcEE
Confidence 99999999999999988765554 43 234433 355678866 77777777743
No 14
>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ...
Probab=59.71 E-value=20 Score=27.87 Aligned_cols=67 Identities=27% Similarity=0.409 Sum_probs=46.9
Q ss_pred eEEcCCCCCccEEEE-----CCeEEEEEEeEEe---cCCCCCeEEEEEEeeCCCCCeEEEEeCCCC-cEEeeeEEee
Q 026237 58 KVNASHVRPGNVIEK-----SGKMYQVIDAEHK---QRGRGGAMMQMELRDIDTGNKVSLRFGTEE-AVERVFVEDK 125 (241)
Q Consensus 58 ~i~a~dirkG~~I~~-----dG~py~V~~~~h~---KpGKG~A~vriklknL~TG~k~e~tf~s~d-kve~v~ve~k 125 (241)
..+..++++||+|.. +|+...+..|+-+ +.|+|- .-.+.++++..|--+|.+|+-.. .++.+.+-++
T Consensus 13 ~~~iP~f~~GDtv~V~~~i~EG~keRiQ~F~GvvI~~~~~G~-~~tftvRki~~gvGVEr~fpl~SP~I~~IeV~r~ 88 (114)
T 3r8s_P 13 KQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGL-HSAFTVRKISNGEGVERVFQTHSPVVDSISVKRR 88 (114)
T ss_dssp CSCCCCCCTTCEEEEEEEEEETTEEEEEEEEEEEEEEECCGG-GCEEEEEEEETTEEEEEEEETTCTTEEEEEEEEC
T ss_pred ccCCCccCCCCEEEEEEEEecCCceeeeeEEEEEEEEECCCC-CeEEEEEEecCCccEEEEEecCCCccceEEEEEc
Confidence 456789999999875 4666666666532 224432 23577999999999999998654 6676666655
No 15
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=56.44 E-value=12 Score=25.46 Aligned_cols=34 Identities=9% Similarity=0.189 Sum_probs=26.2
Q ss_pred CCccccccCchhhhhhhhccCCCCEEEEEEECCEEE
Q 026237 143 ETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRAL 178 (241)
Q Consensus 143 EtyEQi~v~~~~lgd~~~~L~eg~~v~v~~~dg~~i 178 (241)
.+--|+.||++... .. -|++|+.+.+...+|+.+
T Consensus 19 ~~kGqItIPkeiR~-~L-gi~~Gd~l~i~~~~~~Ii 52 (59)
T 1yfb_A 19 DELGRVVIPIELRR-TL-GIAEKDALEIYVDDEKII 52 (59)
T ss_dssp CTTCEEECCHHHHH-HT-TCCTTCEEEEEEETTEEE
T ss_pred CCCCEEEeCHHHHH-Hc-CCCCCCEEEEEEECCEEE
Confidence 45779999998753 33 389999999998888643
No 16
>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=56.35 E-value=45 Score=25.11 Aligned_cols=62 Identities=18% Similarity=0.193 Sum_probs=40.7
Q ss_pred CCCCCccEEEE----CCeEEEEEEeEEe---cCCCCCeEEEEEEeeCCCCCeEEEEeCCCC-cEEeeeEEe
Q 026237 62 SHVRPGNVIEK----SGKMYQVIDAEHK---QRGRGGAMMQMELRDIDTGNKVSLRFGTEE-AVERVFVED 124 (241)
Q Consensus 62 ~dirkG~~I~~----dG~py~V~~~~h~---KpGKG~A~vriklknL~TG~k~e~tf~s~d-kve~v~ve~ 124 (241)
.++++||+|.. .|..-++..++-+ +.|+|- .-.+.++++..|--+|.+|+-.. .++.+.+-+
T Consensus 2 P~f~~GDtv~V~~~i~g~k~R~q~F~GvvI~~~~~G~-~~tftvRki~~gvGVEr~fpl~SP~I~~IeV~r 71 (98)
T 2ftc_K 2 PEFYVGSILRVTTADPYASGKISQFLGICIQRSGRGL-GATFILRNVIEGQGVEICFELYNPRVQEIQVVK 71 (98)
T ss_pred CccCCCCEEEEEEEECCCceEeeeEEEEEEEEECCCC-CcEEEEEEeccCceEEEEEecCCCceeEEEEEE
Confidence 47889998754 4444555555532 224333 34688999999999999998654 555555554
No 17
>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ...
Probab=56.13 E-value=23 Score=28.64 Aligned_cols=67 Identities=18% Similarity=0.323 Sum_probs=46.1
Q ss_pred eEEcCCCCCccEEEE-----CCeEEEEEEeEEec---CCCCCeEEEEEEeeCCCCCeEEEEeCCCC-cEEeeeEEee
Q 026237 58 KVNASHVRPGNVIEK-----SGKMYQVIDAEHKQ---RGRGGAMMQMELRDIDTGNKVSLRFGTEE-AVERVFVEDK 125 (241)
Q Consensus 58 ~i~a~dirkG~~I~~-----dG~py~V~~~~h~K---pGKG~A~vriklknL~TG~k~e~tf~s~d-kve~v~ve~k 125 (241)
..+..++++||+|.. +|.-..+..|+-+- .|+|- .-.+.++++..|-=+|.+|+-.. .++.+.|-++
T Consensus 16 ~~diP~F~~GDtV~V~~~i~EG~keRiQ~FeGvVI~rr~~Gl-~~tFtVRkis~gvGVEr~Fpl~SP~I~~IeVvrr 91 (146)
T 3v2d_T 16 RTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGF-NTTFTVRKVSYGVGVERIFPLHSPLIQKIDIVQR 91 (146)
T ss_dssp CCCCCCCCTTCEEEEEEEEECSSCEEEEEEEEEEEEEECCGG-GCEEEEEEEETTEEEEEEEETTCTTEEEEEEEEC
T ss_pred hccCCCcCCCCEEEEEEEEccCCceeeeeEEEEEEEEECCCC-CeEEEEEEecCCccEEEEEecCCCccceEEEEec
Confidence 356789999999864 56655555555322 24332 23577999999999999998654 6677766665
No 18
>2jn4_A Hypothetical protein FIXU, NIFT; structural genomics, PSI-2, protein structure initiative, northeast ST genomics consortium, NESG; NMR {Rhodopseudomonas palustris} SCOP: b.173.1.1
Probab=55.56 E-value=32 Score=25.47 Aligned_cols=53 Identities=23% Similarity=0.295 Sum_probs=37.6
Q ss_pred CCCCEEEEEEECCEEEEEeCCCe-EEEEEEEecCCCCCcCCCCCceeEEeecCcEEEcccc
Q 026237 163 QEGMKVWLQLYDGRALSGSIPKR-VACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSY 222 (241)
Q Consensus 163 ~eg~~v~v~~~dg~~i~v~lP~~-V~l~V~et~p~~kGdT~~~~~K~A~LetG~~v~VP~F 222 (241)
-.||.|.+.. ++.-+++-+|.. ++=.|++.| +...--..++|+||-+..+|..
T Consensus 19 ~~~MKVMIR~-~~~GLs~YVpKKDLEE~VVs~E------~~~~WGG~vtLaNGw~l~lp~l 72 (87)
T 2jn4_A 19 FQGMKVMIRK-TATGHSAYVAKKDLEELIVEME------NPALWGGKVTLANGWQLELPAM 72 (87)
T ss_dssp ---CCEEEEE-CSSCEEEEETTTTEEEEEEEES------SSSSCSSEEEETTSCEEECCCC
T ss_pred ecCCeEEEEe-CCCceEEEEeCCcchhheeeee------cccccCcEEEECCccEEEeCCC
Confidence 3589999954 433499999975 677788876 2233456899999999999875
No 19
>1ed7_A Chitinase A1, (CHBD-CHIA1); twisted beta-sandwich, hydrolase; NMR {Bacillus circulans} SCOP: b.72.2.1
Probab=54.52 E-value=4.2 Score=26.15 Aligned_cols=26 Identities=19% Similarity=0.465 Sum_probs=21.4
Q ss_pred CCCCccEEEECCeEEEEEEeEEecCC
Q 026237 63 HVRPGNVIEKSGKMYQVIDAEHKQRG 88 (241)
Q Consensus 63 dirkG~~I~~dG~py~V~~~~h~KpG 88 (241)
..+.|+.|.++|..|+++.-....+|
T Consensus 7 ~Y~~Gd~Vty~G~~Y~c~q~hts~~~ 32 (45)
T 1ed7_A 7 AYTAGQLVTYNGKTYKCLQPHTSLAG 32 (45)
T ss_dssp EECTTCCEEETTEEECBCSCEEECTT
T ss_pred eEcCCCEEEECCeEEEEEecCcCcCC
Confidence 45789999999999999987776543
No 20
>1dj7_B Ferredoxin thioredoxin reductase: variable chain; 4Fe-4S cluster binding fold with CXCX16CXCX8CXC binding MOTI electron transport; 1.60A {Synechocystis SP} SCOP: b.34.4.3 PDB: 2pu9_B 2pvo_B 2puo_B 2puk_B 2pvd_B 2pvg_B
Probab=49.96 E-value=3.3 Score=30.01 Aligned_cols=18 Identities=28% Similarity=0.534 Sum_probs=16.2
Q ss_pred EECCEEEEEeCCCeEEEE
Q 026237 172 LYDGRALSGSIPKRVACT 189 (241)
Q Consensus 172 ~~dg~~i~v~lP~~V~l~ 189 (241)
.|+|+|||.+||-.|.+.
T Consensus 41 ~wkGr~ISanlP~~V~F~ 58 (75)
T 1dj7_B 41 EWQGRPISANLPVLVKFE 58 (75)
T ss_dssp EETTEECCCSSCEEEEET
T ss_pred eccCcEecCCCCEEEEEe
Confidence 589999999999999883
No 21
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=44.73 E-value=24 Score=26.64 Aligned_cols=49 Identities=18% Similarity=0.350 Sum_probs=34.1
Q ss_pred EEEeCCC----eEEEEEEEecCCCCCcCCCCCceeEEeecCcEEEc--c------ccccCCCEEEEECC
Q 026237 178 LSGSIPK----RVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMV--P------SYLEIGEEIFINPQ 234 (241)
Q Consensus 178 i~v~lP~----~V~l~V~et~p~~kGdT~~~~~K~A~LetG~~v~V--P------~FI~~Gd~I~V~T~ 234 (241)
..+.+|. .+.-+|+++-| +..=.+.|+||.++.+ | ..|..||+|.|...
T Consensus 10 ~~~~~P~~~e~e~~g~V~~~lg--------n~~~~V~l~nG~~~la~i~GKmRk~IwI~~GD~VlVe~~ 70 (102)
T 1jt8_A 10 IRVRIPRKEENEILGIIEQMLG--------ASRVRVRCLDGKTRLGRIPGRLKNRIWVREGDVVIVKPW 70 (102)
T ss_dssp CCCCCSCCSSCCEEEEEECSSC--------SSEEEEEEETTEEEEEECCHHHHHHHCCCSCEEEEECCB
T ss_pred eecccCCCCCCEEEEEEEEEcC--------CCEEEEEECCCCEEEEEEcccceeeEEecCCCEEEEEec
Confidence 3456665 45566666643 4567888999988755 3 46899999999764
No 22
>1mvg_A Liver basic fatty acid binding protein; beta-barrel, calycin, ten antiparallel beta strands, helix- turn-helix motif, transport protein; NMR {Gallus gallus} SCOP: b.60.1.2 PDB: 1tvq_A 1tw4_A* 1zry_A 2jn3_A* 2k62_A*
Probab=44.29 E-value=72 Score=24.41 Aligned_cols=45 Identities=11% Similarity=0.201 Sum_probs=36.7
Q ss_pred EEEEeeCCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEE-eCCEEEE
Q 026237 95 QMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFV 139 (241)
Q Consensus 95 riklknL~TG~k~e~tf~s~dkve~v~ve~k~~qylY~-Dgd~~~F 139 (241)
++.++...+.+..+.+|.-|+.+|.-.++-+.++-++. ||+.++-
T Consensus 46 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 91 (125)
T 1mvg_A 46 DFVVTSKTPRQTVTNSFTLGKEADITTMDGKKLKCTVHLANGKLVT 91 (125)
T ss_dssp EEEEEEECSSCEEEEEEETTEEEEEEETTTEEEEEEEEECSSEEEE
T ss_pred EEEEEEEcCCeEEEEEEECCCcEEEECCCCCEeeEEEEEECCEEEE
Confidence 45666677788899999999999999999888888777 7776654
No 23
>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.6 PDB: 1nwx_N* 1nwy_N* 1sm1_N* 1xbp_N* 2zjp_M* 2zjq_M 1nkw_N 3cf5_M* 3dll_M* 3pio_M* 3pip_M* 1pnu_N 1pny_N 1vor_Q 1vou_Q 1vow_Q 1voy_Q 1vp0_Q
Probab=43.69 E-value=22 Score=29.32 Aligned_cols=66 Identities=21% Similarity=0.320 Sum_probs=46.1
Q ss_pred EEcCCCCCccEEEE-----CCeEEEEEEeEEe---cCCCCCeEEEEEEeeCCCCCeEEEEeCCCC-cEEeeeEEee
Q 026237 59 VNASHVRPGNVIEK-----SGKMYQVIDAEHK---QRGRGGAMMQMELRDIDTGNKVSLRFGTEE-AVERVFVEDK 125 (241)
Q Consensus 59 i~a~dirkG~~I~~-----dG~py~V~~~~h~---KpGKG~A~vriklknL~TG~k~e~tf~s~d-kve~v~ve~k 125 (241)
.+..++++||+|.. +|..-++.-|+-+ +.|+|- .-.+.+|++..|-=+|.+|+-.. .++.+.|-++
T Consensus 22 ~diP~Fr~GDtV~V~vkI~EG~KeRiQ~FeGVVIarr~~Gl-~sTFTVRkis~GvGVER~FplhSP~I~kIEVvrr 96 (166)
T 2zjr_M 22 RQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGS-RKSFTVRKISFGEGVERVFPFASPLVNQVTIVER 96 (166)
T ss_dssp CCCCCCSSSEEEEEECCTTSSSCCCCEEEECCEEECCCCGG-GCEEEEEEEETTEEEEEEEETTCTTEEEEEEEEC
T ss_pred cCCCCcCCCCEEEEEEEEecCCeeeecceEEEEEEEeCCCC-CcEEEEEEecCCeeEEEEEecCCCccceEEEEec
Confidence 46789999999975 4554444444421 224433 34688999999999999998755 6777777665
No 24
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Probab=43.30 E-value=23 Score=30.26 Aligned_cols=30 Identities=13% Similarity=0.259 Sum_probs=19.5
Q ss_pred eEEeecCcEEEcc-ccccCCCEEEEECCCCc
Q 026237 208 RALLDNGVTVMVP-SYLEIGEEIFINPQDDS 237 (241)
Q Consensus 208 ~A~LetG~~v~VP-~FI~~Gd~I~V~T~~g~ 237 (241)
...+..|.+|..| +-|++||.|+||.++++
T Consensus 102 ~l~~HDGrti~~pd~~ik~~Dtv~idl~~~k 132 (213)
T 3kbg_A 102 QLGTHDGRTFITDDKSIKVGDVLAVSVPDMK 132 (213)
T ss_dssp EEEETTSCEEEECCTTCCTTCEEEEETTTCC
T ss_pred EEEecCccEEEcCCCCcccCCEEEEECCCCc
Confidence 4556666666664 35777777777777665
No 25
>3iz6_D 40S ribosomal protein S4 (S4E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=41.84 E-value=27 Score=30.90 Aligned_cols=30 Identities=17% Similarity=0.243 Sum_probs=20.6
Q ss_pred eEEeecCcEEEccc-cccCCCEEEEECCCCc
Q 026237 208 RALLDNGVTVMVPS-YLEIGEEIFINPQDDS 237 (241)
Q Consensus 208 ~A~LetG~~v~VP~-FI~~Gd~I~V~T~~g~ 237 (241)
...+..|.+|.+|. -|++||.|+||.++++
T Consensus 138 ql~tHDGrti~~~dp~ik~~DTv~idl~~~k 168 (265)
T 3iz6_D 138 YLNTYDGRTIRYPDPIIKANDTIKIDLETNK 168 (265)
T ss_dssp EEEETTSCCCBSCSSCCCTTCEEEECSSSCC
T ss_pred EEEeecceEEecCCCCcccCCEEEEECCCCc
Confidence 56667777776653 5777777777777765
No 26
>1b56_A Fatty acid binding protein; lipid-binding, fatty acid transport, beta barrel, lipid binding protein; HET: PLM; 2.05A {Homo sapiens} SCOP: b.60.1.2 PDB: 1jjj_A
Probab=41.73 E-value=83 Score=24.32 Aligned_cols=45 Identities=7% Similarity=0.104 Sum_probs=36.6
Q ss_pred EEEEeeCCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEE-eCCEEEE
Q 026237 95 QMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFV 139 (241)
Q Consensus 95 riklknL~TG~k~e~tf~s~dkve~v~ve~k~~qylY~-Dgd~~~F 139 (241)
++.++...+.+..+.+|.-|+.++.-.++-+.++-++. ||+.++-
T Consensus 51 ~~tikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 96 (135)
T 1b56_A 51 NLTIKTESTLKTTQFSCTLGEKFEETTADGRKTQTVCNFTDGALVQ 96 (135)
T ss_dssp EEEEEEECSSCEEEEEEETTCCEEEECTTSCEEEEEEEEETTEEEE
T ss_pred EEEEEEEcCCceEEEEEECCCcEEEECCCCCeEEEEEEEECCEEEE
Confidence 45666777888999999999999999999888887776 7776543
No 27
>4a1y_A Myelin P2 protein; transport; HET: PLM; 1.20A {Homo sapiens} PDB: 2wut_A* 4a1h_A* 1pmp_A* 1yiv_A*
Probab=41.67 E-value=53 Score=25.52 Aligned_cols=44 Identities=11% Similarity=0.189 Sum_probs=33.8
Q ss_pred EEEeeCCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEE-eCCEEEE
Q 026237 96 MELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFV 139 (241)
Q Consensus 96 iklknL~TG~k~e~tf~s~dkve~v~ve~k~~qylY~-Dgd~~~F 139 (241)
+.++...+.+..+..|.-|+.+|.-.++.+.++-++. ||+.++.
T Consensus 51 ~tikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 95 (133)
T 4a1y_A 51 ITIRTESTFKNTEISFQLGQEFEETTADNRKTKSIVTLQRGSLNQ 95 (133)
T ss_dssp EEEEEEETTEEEEEEECTTBCEEEECTTCCEEEEEEEEETTEEEE
T ss_pred EEEEEecCCccEEEEEEcCCcEEEEcCCCCEEEEEEEEcCCEEEE
Confidence 3444555667788899999999998889888887776 7777654
No 28
>3j20_E 30S ribosomal protein S4E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=40.28 E-value=13 Score=32.38 Aligned_cols=30 Identities=7% Similarity=0.163 Sum_probs=20.4
Q ss_pred eEEeecCcEEEcc----ccccCCCEEEEECCCCc
Q 026237 208 RALLDNGVTVMVP----SYLEIGEEIFINPQDDS 237 (241)
Q Consensus 208 ~A~LetG~~v~VP----~FI~~Gd~I~V~T~~g~ 237 (241)
...+..|.+|.+| +-|++||.|+||.++++
T Consensus 139 ~l~~hDgr~i~~p~~~d~~ik~~Dtv~idl~~~k 172 (243)
T 3j20_E 139 QLNFHDGTNHIVSIAEKDNYFTSYTVLMKVPERE 172 (243)
T ss_dssp EECCSSCCCEECSSSSCSSCSSCEEEEEETTTTE
T ss_pred EEEecCCceEEcccccCCCcccCCEEEEECCCCC
Confidence 3556677777775 56777777777777665
No 29
>3ppt_A Sodium-calcium exchanger; fatty acid transporter, lipid binding proteins, squid nerve, regulatory factor, beta-sandwich, fatty acid; HET: PAM; 1.28A {Loligo pealei} SCOP: b.60.1.0 PDB: 3pp6_A*
Probab=39.98 E-value=97 Score=23.94 Aligned_cols=45 Identities=4% Similarity=0.132 Sum_probs=35.7
Q ss_pred EEEEeeCCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEE-eCCEEEE
Q 026237 95 QMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFV 139 (241)
Q Consensus 95 riklknL~TG~k~e~tf~s~dkve~v~ve~k~~qylY~-Dgd~~~F 139 (241)
.+.++...+.+..+.+|.-|+.+|.-.++-+.++-++. ||+.++-
T Consensus 48 ~~tikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 93 (133)
T 3ppt_A 48 SWSIKTSTTFKTTDISFTIGQEFDETTGDGRKIKTTCKIDGNAMIQ 93 (133)
T ss_dssp EEEEEEECSSCEEEEEEETTCCEEEECTTCCEEEEEEEEETTEEEE
T ss_pred EEEEEEEeCCccEEEEEECCCcEEeEcCCCCEEEEEEEEECCEEEE
Confidence 45566777888899999999999999888888877765 7776543
No 30
>2f9h_A PTS system, IIA component; alpha-beta structure, beta-barrel, dimer, structural genomic protein structure initiative; 1.57A {Enterococcus faecalis} SCOP: b.161.1.1
Probab=39.48 E-value=27 Score=27.48 Aligned_cols=21 Identities=10% Similarity=0.278 Sum_probs=20.0
Q ss_pred CCCCCccEEEECCeEEEEEEe
Q 026237 62 SHVRPGNVIEKSGKMYQVIDA 82 (241)
Q Consensus 62 ~dirkG~~I~~dG~py~V~~~ 82 (241)
.+|++|+.+.++++-|.|..+
T Consensus 53 ~~i~~Gd~l~i~~~~Y~ItaV 73 (129)
T 2f9h_A 53 VTLAEGDHLKIGDTNYTITKV 73 (129)
T ss_dssp CCCCTTCEEEETTEEEEEEEE
T ss_pred CCcCCCCEEEECCEEEEEEEE
Confidence 589999999999999999988
No 31
>1o8v_A Fatty acid binding protein homolog; lipid binding protein, hydatid disease, fatty-acid transport; HET: PLM; 1.60A {Echinococcus granulosus} SCOP: b.60.1.2
Probab=39.46 E-value=1e+02 Score=23.82 Aligned_cols=45 Identities=20% Similarity=0.204 Sum_probs=37.0
Q ss_pred EEEEeeCCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEE-eCCEEEE
Q 026237 95 QMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFV 139 (241)
Q Consensus 95 riklknL~TG~k~e~tf~s~dkve~v~ve~k~~qylY~-Dgd~~~F 139 (241)
.+.++...+.+..+.+|+-|+.++.-.++-+.++-++. ||+.++-
T Consensus 50 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 95 (134)
T 1o8v_A 50 KYKMRSESTFKTTECSFKLGEKFKEVTPDSREVASLITVENGVMKH 95 (134)
T ss_dssp EEEEEEECSSCEEEEEEETTCCEEEECTTCCEEEEEEEEETTEEEE
T ss_pred EEEEEEEcCCceEEEEEECCCcEEEECCCCCEEEEEEEEECCEEEE
Confidence 46667778888999999999999999999888877776 7776554
No 32
>1mdc_A Insect fatty acid binding protein; HET: PLM; 1.75A {Manduca sexta} SCOP: b.60.1.2
Probab=39.21 E-value=97 Score=23.88 Aligned_cols=45 Identities=13% Similarity=0.221 Sum_probs=36.7
Q ss_pred EEEEeeCCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEE-eCCEEEE
Q 026237 95 QMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFV 139 (241)
Q Consensus 95 riklknL~TG~k~e~tf~s~dkve~v~ve~k~~qylY~-Dgd~~~F 139 (241)
.+.++...+.+..+.+|.-|+.+|.-.++-+.++-++. ||+.++-
T Consensus 48 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 93 (132)
T 1mdc_A 48 SYSNTSTGGGGAKTVSFKSGVEFDDVIGAGDSVKSMYTVDGNVVTH 93 (132)
T ss_dssp EEEEEEESTTCCEEEEECTTCCEEEEETTTEEEEEEEEEETTEEEE
T ss_pred EEEEEEEcCCceeEEEEeCCCcEEEECCCCCEEEEEEEEECCEEEE
Confidence 35666777788899999999999999999888887776 7776655
No 33
>1ifc_A Intestinal fatty acid binding protein; lipid-binding protein; 1.19A {Rattus norvegicus} SCOP: b.60.1.2 PDB: 1ael_A 1icm_A* 1ifb_A 1ure_A* 2ifb_A* 3akn_A* 1icn_A* 1t8v_A 1dc9_A 1a57_A 1kzx_A 1kzw_A 3akm_A* 3ifb_A 1sa8_A
Probab=38.95 E-value=82 Score=24.26 Aligned_cols=45 Identities=9% Similarity=0.171 Sum_probs=35.6
Q ss_pred EEEEeeCCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEE-eCCEEEE
Q 026237 95 QMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFV 139 (241)
Q Consensus 95 riklknL~TG~k~e~tf~s~dkve~v~ve~k~~qylY~-Dgd~~~F 139 (241)
++.++...+.+..+.+|.-|+.++.-.++-+.++-++. ||+.++-
T Consensus 47 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 92 (132)
T 1ifc_A 47 KFTVKESSNFRNIDVVFELGVDFAYSLADGTELTGTWTMEGNKLVG 92 (132)
T ss_dssp EEEEEEECSSCEEEEEEETTCCEEEECTTSCEEEEEEEEETTEEEE
T ss_pred EEEEEEEcCCeEEEEEEECCCcEEEECCCCCEEEEEEEEECCEEEE
Confidence 35566667788899999999999999998888877776 7776544
No 34
>2a0a_A DER F 13; beta barrel, helix, allergen; NMR {Dermatophagoides farinae} SCOP: b.60.1.2
Probab=38.11 E-value=1.2e+02 Score=23.17 Aligned_cols=45 Identities=18% Similarity=0.192 Sum_probs=36.9
Q ss_pred EEEEeeCCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEE-eC-CEEEE
Q 026237 95 QMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-EN-DTAFV 139 (241)
Q Consensus 95 riklknL~TG~k~e~tf~s~dkve~v~ve~k~~qylY~-Dg-d~~~F 139 (241)
++.++...+.+..+.+|.-|+.+|.-.++-+.++-++. || +.++-
T Consensus 48 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~~t~eg~~kLv~ 94 (131)
T 2a0a_A 48 QYIFRSLSTFKNTEAKFKLGEEFEEDRADGKRVKTVIQKEGDNKFVQ 94 (131)
T ss_dssp CEEEEECCTTSCEEEEECSSCCEEEEETTTEEEEEEEEEETTTEEEE
T ss_pred EEEEEEEcCCeeEEEEEECCCcEEEECCCCCEEEEEEEEeCCCEEEE
Confidence 46667778888999999999999999999888877776 77 66554
No 35
>3q6l_A Fatty acid-binding protein, adipocyte; lipid chaperone, lipid binding protein; 1.40A {Homo sapiens} PDB: 2q9s_A* 2qm9_A*
Probab=37.96 E-value=1e+02 Score=24.54 Aligned_cols=45 Identities=11% Similarity=0.180 Sum_probs=35.8
Q ss_pred EEEEeeCCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEE-eCCEEEE
Q 026237 95 QMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFV 139 (241)
Q Consensus 95 riklknL~TG~k~e~tf~s~dkve~v~ve~k~~qylY~-Dgd~~~F 139 (241)
.+.++...+.+..+.+|.-|+.+|.-..+-+.++-++. ||+.++-
T Consensus 69 ~~tikt~st~kt~~~~F~lGeEfee~t~dGrk~Ks~vt~eg~kLv~ 114 (152)
T 3q6l_A 69 VITIKSESTFKNTEISFILGQEFDEVTADDRKVKSTITLDGGVLVH 114 (152)
T ss_dssp EEEEEEECSSCCEEEEECTTCCEEEECTTCCEEEEEEEEETTEEEE
T ss_pred EEEEEEEeccccEEEEEEcCCcEEeecCCCCEEEEEEEEECCEEEE
Confidence 35566677788899999999999999888888877775 7776653
No 36
>3p6d_A Fatty acid-binding protein, adipocyte; lipocalin, beta barrel, lipid BI protein; HET: ZGB; 1.06A {Homo sapiens} SCOP: b.60.1.2 PDB: 3p6c_A* 3p6e_A* 3p6f_A* 3p6g_A* 3p6h_A* 3rzy_A 2hnx_A* 3fr4_A* 2nnq_A* 1tow_A* 1tou_A* 3fr2_A* 3fr5_A* 1adl_A* 1alb_A 1lib_A 1lic_A* 1lid_A* 1lie_A* 1lif_A* ...
Probab=37.20 E-value=1.1e+02 Score=23.83 Aligned_cols=45 Identities=11% Similarity=0.180 Sum_probs=35.5
Q ss_pred EEEEeeCCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEE-eCCEEEE
Q 026237 95 QMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFV 139 (241)
Q Consensus 95 riklknL~TG~k~e~tf~s~dkve~v~ve~k~~qylY~-Dgd~~~F 139 (241)
.+.++...+.+..+.+|.-|+.+|.-..+-+.++-++. ||+.++-
T Consensus 56 ~~tikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 101 (139)
T 3p6d_A 56 VITIKSESTFKNTEISFILGQEFDEVTADDRKVKSTITLDGGVLVH 101 (139)
T ss_dssp EEEEEEECSSCCEEEEECTTCCEEEECTTCCEEEEEEEEETTEEEE
T ss_pred EEEEEEEeccccEEEEEEcCCcEEeecCCCCEEEEEEEEECCEEEE
Confidence 35566667778889999999999998888888877775 7776643
No 37
>1vyf_A SM14, 14 kDa fatty acid binding protein; transport protein; HET: OLA; 1.85A {Schistosoma mansoni} SCOP: b.60.1.2 PDB: 1vyg_A* 2poa_A
Probab=37.07 E-value=91 Score=24.10 Aligned_cols=45 Identities=11% Similarity=0.107 Sum_probs=34.9
Q ss_pred EEEEeeCCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEE--eCCEEEE
Q 026237 95 QMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT--ENDTAFV 139 (241)
Q Consensus 95 riklknL~TG~k~e~tf~s~dkve~v~ve~k~~qylY~--Dgd~~~F 139 (241)
++.++...+.+..+.+|+-|+.+|.-.++-+.++-++. ||+.++-
T Consensus 50 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~~t~~eg~kLv~ 96 (135)
T 1vyf_A 50 KMTMLTESTFKNLSCTFKFGEEFDEKTSDGRNVKSVVEKNSESKLTQ 96 (135)
T ss_dssp EEEEEEECSSCCEEEEECTTCCEEEECTTSCEEEEEEEEEETTEEEE
T ss_pred EEEEEEEcCCceEEEEEECCCCEEEECCCCCEEEEEEEEccCCEEEE
Confidence 34556667778889999999999999888887776665 7776554
No 38
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=36.07 E-value=66 Score=23.57 Aligned_cols=54 Identities=17% Similarity=0.228 Sum_probs=31.7
Q ss_pred ceeeEEcCCCCCccEEEECCeEEEEEEeEEe---cCCCC--CeEEEEEEeeCCCCCeEEEEeC
Q 026237 55 RAVKVNASHVRPGNVIEKSGKMYQVIDAEHK---QRGRG--GAMMQMELRDIDTGNKVSLRFG 112 (241)
Q Consensus 55 R~~~i~a~dirkG~~I~~dG~py~V~~~~h~---KpGKG--~A~vriklknL~TG~k~e~tf~ 112 (241)
++.+..+++|++|+.+.. .++|.+..-. ...+| ..+..+.+.| .||...-.-|.
T Consensus 4 ~~~~~~I~~L~~g~~v~i---~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D-~TG~I~~t~w~ 62 (115)
T 2k50_A 4 EHRMDTISKLEEGAETPV---TGRVMKISSPRTFTTRKGREGKLANVIIAD-DTGELRAVFWT 62 (115)
T ss_dssp TTCCCCTTTCCTTCEEEE---EEEEEEECCCEECCCTTSSCCEEEEEEEEE-TTEEEEEEEET
T ss_pred ccceEEHHHCCCCCEeEE---EEEEEECCCceEEEcCCCCEEEEEEEEEEe-CCCeEEEEEeC
Confidence 345567899999988744 4555555222 22234 5666777777 67743333343
No 39
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.77 E-value=76 Score=24.20 Aligned_cols=42 Identities=12% Similarity=0.310 Sum_probs=26.1
Q ss_pred eEEEEEEEecCCCCCcCCCCCceeEEeecCcEEEc--c------ccccCCCEEEEECC
Q 026237 185 RVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMV--P------SYLEIGEEIFINPQ 234 (241)
Q Consensus 185 ~V~l~V~et~p~~kGdT~~~~~K~A~LetG~~v~V--P------~FI~~Gd~I~V~T~ 234 (241)
.+.-+|+++-| +..=.+.|+||.++.+ | ..|+.||+|.|...
T Consensus 16 e~~g~V~~~lg--------n~~f~V~l~nG~~~la~i~GK~Rk~IwI~~GD~VlVe~~ 65 (111)
T 2dgy_A 16 QQIVRVLRTPG--------NNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVDPI 65 (111)
T ss_dssp CEEEEEEECCS--------SSEEEEECTTSCEEEEECCTTCCSCCCCCSSCEEEEEEC
T ss_pred eEEEEEEEeCC--------CCEEEEEeCCCCEEEEEechhhcccEEEcCCCEEEEEec
Confidence 34455555533 3345566667766543 2 46889999999764
No 40
>2xzm_W 40S ribosomal protein S4; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_W
Probab=35.47 E-value=51 Score=29.01 Aligned_cols=30 Identities=13% Similarity=0.303 Sum_probs=15.6
Q ss_pred eEEeecCcEEEcc-ccccCCCEEEEECCCCc
Q 026237 208 RALLDNGVTVMVP-SYLEIGEEIFINPQDDS 237 (241)
Q Consensus 208 ~A~LetG~~v~VP-~FI~~Gd~I~V~T~~g~ 237 (241)
...+..|..|..| +-|++||.|+||.++++
T Consensus 140 ql~~HDGrti~~~d~~ik~~Dtv~idl~~~k 170 (260)
T 2xzm_W 140 YIVTHDSRTIRFPNPEIKIGDTLKYDLVNNK 170 (260)
T ss_dssp EEEETTTEEEESCCSSCCTTBEEEEETTTTE
T ss_pred EEEecCCceEeccCCcCccCCeEEEeCCCCc
Confidence 3444555555554 24455666655555544
No 41
>4a60_A Fatty acid-binding protein 9 testis lipid-binding protein, TLBP, testis-type fatty...; transport protein; 1.53A {Homo sapiens} PDB: 3nr3_A*
Probab=35.45 E-value=97 Score=24.80 Aligned_cols=44 Identities=16% Similarity=0.259 Sum_probs=34.7
Q ss_pred EEEeeCCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEE-eCCEEEE
Q 026237 96 MELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFV 139 (241)
Q Consensus 96 iklknL~TG~k~e~tf~s~dkve~v~ve~k~~qylY~-Dgd~~~F 139 (241)
+.++...+.+..+.+|.-|+.+|....+-+.++-++. ||+.++-
T Consensus 72 ~tikt~st~kt~~~~F~lGeEfee~t~DGrk~Ks~vt~eg~kLv~ 116 (154)
T 4a60_A 72 MTIRTESSFQDTKISFKLGEEFDETTADNRKVKSTITLENGSMIH 116 (154)
T ss_dssp EEEEEEETTEEEEEEECTTCCEEEECTTCCEEEEEEEEETTEEEE
T ss_pred EEEEEEcCCceEEEEEECCCcEEeEcCCCCEEEEEEEEECCEEEE
Confidence 4556666778889999999999998888888877775 7776653
No 42
>3u5c_E RP5, S7, YS6, 40S ribosomal protein S4-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_D 3u5g_E
Probab=35.37 E-value=27 Score=30.78 Aligned_cols=30 Identities=13% Similarity=0.333 Sum_probs=19.3
Q ss_pred eEEeecCcEEEccc-cccCCCEEEEECCCCc
Q 026237 208 RALLDNGVTVMVPS-YLEIGEEIFINPQDDS 237 (241)
Q Consensus 208 ~A~LetG~~v~VP~-FI~~Gd~I~V~T~~g~ 237 (241)
...+..|.+|.+|. -|++||.|+||.++++
T Consensus 138 ql~tHDGrti~~~dp~ik~~Dtv~idl~~~k 168 (261)
T 3u5c_E 138 YVVTHDGRTIRYPDPNIKVNDTVKIDLASGK 168 (261)
T ss_dssp EEEETTTEEEESCCSSCCTTCEEEECSSSSC
T ss_pred EEEEecceEEecCCCCcccCCEEEEECCCCc
Confidence 45556666666653 5677777777777665
No 43
>2kca_A Bacteriophage SPP1 complete nucleotide sequence; beta-barrel, virus; NMR {Bacillus phage SPP1}
Probab=35.15 E-value=1e+02 Score=22.07 Aligned_cols=38 Identities=8% Similarity=0.054 Sum_probs=28.5
Q ss_pred CCCCCccEEEECCeEEEEEEe-EEecCCCCCeEEEEEEeeC
Q 026237 62 SHVRPGNVIEKSGKMYQVIDA-EHKQRGRGGAMMQMELRDI 101 (241)
Q Consensus 62 ~dirkG~~I~~dG~py~V~~~-~h~KpGKG~A~vriklknL 101 (241)
.+|..++.|.++|+.|.|..+ ... ..++-++.+.++-.
T Consensus 66 ~~i~~~~ri~~~g~~y~I~~v~~~~--~~~~~~l~i~~~~~ 104 (109)
T 2kca_A 66 DRIDKKMRVIYRGKIVTFIGDPVDL--SGLQEITRIKGKED 104 (109)
T ss_dssp CCSSSSEEEEETTEEEEEEEEEEEC--CTTTCEEEEEEECC
T ss_pred CCCCCccEEEECCEEEEEEEeccCc--ccCcEEEEEEEEEc
Confidence 588999999999999999988 544 33344666666544
No 44
>2rcq_A CRBP-II, retinol-binding protein II, cellular; cellular retinol binding protein II, lipid-binding protein, X-RAY, cytoplasm, transport, vitamin A; HET: TLA; 1.20A {Homo sapiens} PDB: 2rct_A* 1b4m_A 1eii_A* 1opa_A 1opb_A* 1kqw_A* 1kqx_A
Probab=34.87 E-value=99 Score=24.17 Aligned_cols=45 Identities=13% Similarity=0.216 Sum_probs=35.3
Q ss_pred EEEEeeCCCCCeEEEEeCCCCcEEe--eeEEeeEEEEEEE-eCCEEEE
Q 026237 95 QMELRDIDTGNKVSLRFGTEEAVER--VFVEDKSFTCLYT-ENDTAFV 139 (241)
Q Consensus 95 riklknL~TG~k~e~tf~s~dkve~--v~ve~k~~qylY~-Dgd~~~F 139 (241)
.+.++...+.+..+.+|.-|+.+|. -.++-+.++-++. ||+.++.
T Consensus 52 ~~tikt~s~~k~~~~~F~lGeEfee~~~t~dgrk~ks~vt~eg~kLv~ 99 (141)
T 2rcq_A 52 NFKTKTTSTFRNYDVDFTVGVEFDEYTKSLDNRHVKALVTWEGDVLVC 99 (141)
T ss_dssp EEEEEEECSSCEEEEEEETTCCEEEECTTTTCCEEEEEEEEETTEEEE
T ss_pred EEEEEEEcCCeEEEEEEECCCeEEeeeecCCCCEEEEEEEEeCCEEEE
Confidence 3455666778899999999999999 8888887777666 7776655
No 45
>2qo4_A Liver-basic fatty acid binding protein; liver bIle acid-binding protein, BABP, fatty acid-binding PR FABP, cholic acid cholate, bIle acid; HET: CHD; 1.50A {Danio rerio} PDB: 2qo6_A* 2qo5_A* 2ftb_A* 2ft9_A*
Probab=34.84 E-value=72 Score=24.41 Aligned_cols=44 Identities=14% Similarity=0.319 Sum_probs=34.9
Q ss_pred EEEeeCCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEE-eCCEEEE
Q 026237 96 MELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFV 139 (241)
Q Consensus 96 iklknL~TG~k~e~tf~s~dkve~v~ve~k~~qylY~-Dgd~~~F 139 (241)
+.++...+.+..+.+|.-|+.+|.-.++-+.++-++. ||+.++-
T Consensus 48 ~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~~t~eg~kLv~ 92 (126)
T 2qo4_A 48 FTITSKTPGKTVTNSFTIGKEAEITTMDGKKLKCIVKLDGGKLVC 92 (126)
T ss_dssp EEEEEEETTEEEEEEEETTBEEEEECTTSCEEEEECEEETTEEEE
T ss_pred EEEEEEcCCceEEEEeeCCCcEEEECCCCCEeEEEEEEECCEEEE
Confidence 4455556677888999999999999999888887776 7787655
No 46
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=34.77 E-value=17 Score=23.77 Aligned_cols=32 Identities=19% Similarity=0.151 Sum_probs=24.4
Q ss_pred CCccccccCchhhhhhhhccCCCCEEEEEEECCE
Q 026237 143 ETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGR 176 (241)
Q Consensus 143 EtyEQi~v~~~~lgd~~~~L~eg~~v~v~~~dg~ 176 (241)
..--|+.||++... .. -|++|+.+.+...+|.
T Consensus 9 ~~kgqi~IPk~ir~-~l-gi~~Gd~v~i~~~~~~ 40 (53)
T 2l66_A 9 SRNYQVTIPAKVRQ-KF-QIKEGDLVKVTFDESE 40 (53)
T ss_dssp CSSSCBCCCHHHHH-HS-CCCTTCEEEEEECSSS
T ss_pred CCCCEEEeCHHHHH-Hc-CcCCCCEEEEEEECCE
Confidence 34679999998753 33 3799999999887775
No 47
>1fdq_A Fatty acid-binding protein, brain; omega-3, long chain poly unsaturated fatty acid, lipid binding protein; HET: HXA; 2.10A {Homo sapiens} SCOP: b.60.1.2 PDB: 1fe3_A* 1jjx_A
Probab=34.14 E-value=80 Score=24.25 Aligned_cols=45 Identities=13% Similarity=0.296 Sum_probs=35.7
Q ss_pred EEEEeeCCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEE-eCCEEEE
Q 026237 95 QMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFV 139 (241)
Q Consensus 95 riklknL~TG~k~e~tf~s~dkve~v~ve~k~~qylY~-Dgd~~~F 139 (241)
++.++...+.+..+.+|+-|+.++.-.++-+.++-++. ||+.++-
T Consensus 48 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~~t~eg~kLv~ 93 (131)
T 1fdq_A 48 KVVIRTLSTFKNTEISFQLGEEFDETTADDRNCKSVVSLDGDKLVH 93 (131)
T ss_dssp EEEEEEECSSCBCCEEECTTCCEEEECTTCCEEEEEEEEETTEEEE
T ss_pred EEEEEEecCCccEEEEEeCCCceEEECCCCCEEEEEEEEECCEEEE
Confidence 45566667778888999999999999999888877776 7776654
No 48
>1crb_A Cellular retinol binding protein; cellular lipophilic transport protein; HET: RTL; 2.10A {Rattus rattus} SCOP: b.60.1.2 PDB: 1mx7_A 1mx8_A* 1jbh_A 1kgl_A*
Probab=32.67 E-value=1e+02 Score=23.74 Aligned_cols=45 Identities=16% Similarity=0.235 Sum_probs=36.0
Q ss_pred EEEEeeCCCCCeEEEEeCCCCcEEe--eeEEeeEEEEEEE-eCCEEEE
Q 026237 95 QMELRDIDTGNKVSLRFGTEEAVER--VFVEDKSFTCLYT-ENDTAFV 139 (241)
Q Consensus 95 riklknL~TG~k~e~tf~s~dkve~--v~ve~k~~qylY~-Dgd~~~F 139 (241)
.+.++...+.+..+.+|.-|+.+|. -.++-+.++-++. ||+.++-
T Consensus 48 ~~~ikt~s~~k~~~~~F~lGeEfee~~~t~dgrk~ks~vt~eg~kLv~ 95 (134)
T 1crb_A 48 HMIIRTLSTFRNYIMDFQVGKEFEEDLTGIDDRKCMTTVSWDGDKLQC 95 (134)
T ss_dssp EEEEEEECSSCCEEEEEETTCCEEEECTTTTCCEEEEEEEEETTEEEE
T ss_pred EEEEEEecCCceEEEEEeCCCeeeeeeecCCCCEEEEEEEEECCEEEE
Confidence 4556677788899999999999999 8888888777766 7776654
No 49
>1mvf_D MAZE protein, PEMI-like protein 1; plasmid addiction, camel antibody, addiction antidote, immun; 1.65A {Escherichia coli} SCOP: b.129.1.1 PDB: 1ub4_C
Probab=32.31 E-value=37 Score=23.82 Aligned_cols=31 Identities=23% Similarity=0.362 Sum_probs=24.0
Q ss_pred cccccCchhhhhhhhccCCCCEEEEEEECCEEE
Q 026237 146 EQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRAL 178 (241)
Q Consensus 146 EQi~v~~~~lgd~~~~L~eg~~v~v~~~dg~~i 178 (241)
-++.||++... ... |.+|++|.+...+|..+
T Consensus 13 ~~v~iPk~~~~-~lg-l~~gd~v~i~~~~~~ii 43 (82)
T 1mvf_D 13 PAVRIPATLMQ-ALN-LNIDDEVKIDLVDGKLI 43 (82)
T ss_dssp EEEECCHHHHH-HTT-CCTTCBEEEEEETTEEE
T ss_pred cEEEECHHHHH-HcC-CCCCCEEEEEEECCEEE
Confidence 58899998763 333 78999999998888754
No 50
>1p6p_A Fatty acid-binding protein, liver; beta barrel, lipid binding protein; 2.50A {Bufo arenarum} SCOP: b.60.1.2
Probab=32.24 E-value=68 Score=24.49 Aligned_cols=44 Identities=11% Similarity=0.083 Sum_probs=34.1
Q ss_pred EEEeeCCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEE-eCCEEEE
Q 026237 96 MELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFV 139 (241)
Q Consensus 96 iklknL~TG~k~e~tf~s~dkve~v~ve~k~~qylY~-Dgd~~~F 139 (241)
+.++...+.+..+.+|.-|+.+|.-.++-+.++-++. ||+.++-
T Consensus 47 ~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 91 (125)
T 1p6p_A 47 FVVTSKTPKQTHSNSFTVGKESEITSMDGKKIKVTVQLEGGKLIC 91 (125)
T ss_dssp EEEEEEETTEEEEEEEETTSCEEECTTTSCCEEEEEEECSSEEEE
T ss_pred EEEEEEcCCeEEEEEEECCCcEEEEcCCCCEEEEEEEEECCEEEE
Confidence 4444555677888999999999999999888887776 7776654
No 51
>1ggl_A Protein (cellular retinol-binding protein III); carrier, transport protein; 2.31A {Homo sapiens} SCOP: b.60.1.2
Probab=32.24 E-value=1.2e+02 Score=23.45 Aligned_cols=45 Identities=18% Similarity=0.317 Sum_probs=35.9
Q ss_pred EEEEeeCCCCCeEEEEeCCCCcEEeee--EEeeEEEEEEE-eCCEEEE
Q 026237 95 QMELRDIDTGNKVSLRFGTEEAVERVF--VEDKSFTCLYT-ENDTAFV 139 (241)
Q Consensus 95 riklknL~TG~k~e~tf~s~dkve~v~--ve~k~~qylY~-Dgd~~~F 139 (241)
.+.++...+.+..+.+|.-|+.+|.-. ++-+.++-++. ||+.++-
T Consensus 48 ~~~ikt~s~~k~~~~~F~lGeEfee~t~~~dgrk~ks~vt~eg~kLv~ 95 (134)
T 1ggl_A 48 HMTVRTLSTFRNYTVQFDVGVEFEEDLRSVDGRKCQTIVTWEEEHLVC 95 (134)
T ss_dssp EEEEEEECSSCCEEEEEETTSCEEEEETTTTSEEEEEEEEECSSSEEE
T ss_pred EEEEEEEcCCceEEEEeeCCCcEEEEccCCCCcEeeeEEEEECCEEEE
Confidence 355666777889999999999999999 88888877776 6666554
No 52
>2pp6_A Gifsy-2 prophage ATP-binding sugar transporter-LI protein; beta barrel, 4 helix bundle, structural genomics, PSI-2; 2.70A {Salmonella typhimurium LT2} SCOP: b.106.1.2
Probab=31.92 E-value=93 Score=23.60 Aligned_cols=40 Identities=23% Similarity=0.367 Sum_probs=27.3
Q ss_pred ceeeEEcCCC--CCccEEEECCeEEEEEEeEEecCCCCCeEEEEE
Q 026237 55 RAVKVNASHV--RPGNVIEKSGKMYQVIDAEHKQRGRGGAMMQME 97 (241)
Q Consensus 55 R~~~i~a~di--rkG~~I~~dG~py~V~~~~h~KpGKG~A~vrik 97 (241)
|.+.+=.+.. |.|+.+.++|+-|.|..+++.- |.-.++++
T Consensus 53 rsLvvFSsgYrP~r~D~Vv~~Gk~y~Vtr~~~~n---gk~~i~LE 94 (102)
T 2pp6_A 53 KNVVVFSGNVIPRRGDRVVLRGSEFTVTRIRRFN---GKPQLTLE 94 (102)
T ss_dssp EEEEECCSSCCCCTTCEEEETTEEEEEEEEEEET---TEEEEEEE
T ss_pred eEEEEecCCcccCCCCEEEEcCcEEEEEEEEEEC---CcEEEEEE
Confidence 3333334444 5699999999999999999763 44444444
No 53
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1
Probab=31.42 E-value=73 Score=24.77 Aligned_cols=30 Identities=13% Similarity=0.093 Sum_probs=21.4
Q ss_pred eeeEEcCCCCCccEEE-ECC-----eEEEEEEeEEe
Q 026237 56 AVKVNASHVRPGNVIE-KSG-----KMYQVIDAEHK 85 (241)
Q Consensus 56 ~~~i~a~dirkG~~I~-~dG-----~py~V~~~~h~ 85 (241)
...+.|.+|++|+.|. .+| .+.+|++++.+
T Consensus 84 ~~~v~A~~l~~GD~v~~~~~~~~~~~~~~V~~v~~~ 119 (145)
T 1at0_A 84 LTFVFADRIEEKNQVLVRDVETGELRPQRVVKVGSV 119 (145)
T ss_dssp EEEEEGGGCCTTCEEEEECTTTCCEEEEEEEEEEEE
T ss_pred EEEEEHHHCcCCCEEEEecCCCCCEEEEEEEEEEEE
Confidence 4678899999999885 444 46677776643
No 54
>3rsw_A Fatty acid-binding protein, heart; lipid carrier, molecular chaperone, heart fatty acid binding type 2 diabetes, atherosclerosis, chaperone; 2.60A {Homo sapiens} PDB: 1g5w_A 1hmr_A* 1hms_A* 1hmt_A* 2hmb_A* 1bwy_A
Probab=31.21 E-value=1.1e+02 Score=24.64 Aligned_cols=44 Identities=11% Similarity=0.209 Sum_probs=35.2
Q ss_pred EEEEeeCCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEE-eCCEEE
Q 026237 95 QMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAF 138 (241)
Q Consensus 95 riklknL~TG~k~e~tf~s~dkve~v~ve~k~~qylY~-Dgd~~~ 138 (241)
.+.++...+.+..+.+|.-|+.+|.-..+-+.++-++. ||+.++
T Consensus 74 ~~tikt~St~kt~~~~F~lGeEfee~t~DGrk~Ks~vt~eg~kLv 118 (158)
T 3rsw_A 74 ILTLKTHSTFKNTEISFKLGVEFDETTADDRKVKSIVTLDGGKLV 118 (158)
T ss_dssp EEEEEEECSSCEECCEEETTBCEEEECSSCCEEEEEEEESSSEEE
T ss_pred EEEEEEEccCceEEEEEEcCCcEEeecCCCCEEEEEEEEECCEEE
Confidence 34566677788889999999999999888888887776 667654
No 55
>2f73_A L-FABP, fatty acid-binding protein, liver; structural genomics, structural genomics consortium, SGC, lipid binding protein; 2.50A {Homo sapiens} SCOP: b.60.1.2
Probab=30.43 E-value=1e+02 Score=24.44 Aligned_cols=44 Identities=9% Similarity=0.105 Sum_probs=34.9
Q ss_pred EEEeeCCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEE-eC-CEEEE
Q 026237 96 MELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-EN-DTAFV 139 (241)
Q Consensus 96 iklknL~TG~k~e~tf~s~dkve~v~ve~k~~qylY~-Dg-d~~~F 139 (241)
+.++...+.+..+.+|.-|+.+|.-.++-+.++-++. || +.++-
T Consensus 70 ~tikt~st~kt~~~~F~lGeEfee~t~DGrk~Ks~vt~egd~kLv~ 115 (149)
T 2f73_A 70 FKFTITAGSKVIQNEFTVGEECELETMTGEKVKTVVQLEGDNKLVT 115 (149)
T ss_dssp EEEEEEETTEEEEEEEETTSEEEEECSSSCEEEEECEEETTTEEEE
T ss_pred EEEEEEeCCeEEEEEEeCCCcEEEEcCCCCEEEEEEEEeCCCcEEE
Confidence 4555566677889999999999999999888887776 77 66554
No 56
>1lpj_A Retinol-binding protein IV, cellular; cellular retinol-binding protein, CRBP, vitamin A, ILBPS, transport protein; 2.00A {Homo sapiens} SCOP: b.60.1.2
Probab=29.11 E-value=92 Score=23.96 Aligned_cols=45 Identities=11% Similarity=0.197 Sum_probs=35.1
Q ss_pred EEEEeeCCCCCeEEEEeCCCCcEEeee--EEeeEEEEEEE-eCCEEEE
Q 026237 95 QMELRDIDTGNKVSLRFGTEEAVERVF--VEDKSFTCLYT-ENDTAFV 139 (241)
Q Consensus 95 riklknL~TG~k~e~tf~s~dkve~v~--ve~k~~qylY~-Dgd~~~F 139 (241)
++.++...+.+..+.+|.-|+.++.-. ++-+.++-++. ||+.++-
T Consensus 48 ~~~ikt~s~~k~~~~~F~lGeefee~t~~~dgrk~ks~~t~eg~kLv~ 95 (133)
T 1lpj_A 48 SFTIHTNSSLRNYFVKFKVGEEFDEDNRGLDNRKCKSLVIWDNDRLTC 95 (133)
T ss_dssp EEEEEEECSSCCEEEEEETTCCEEEECTTTTCCEEEEEEEEETTEEEE
T ss_pred EEEEEEEeCCceeEEEeeCCCceEEEccCCCCCEEEEEEEEECCEEEE
Confidence 455666777888899999999999987 88777776666 7776655
No 57
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=29.08 E-value=1.3e+02 Score=21.71 Aligned_cols=54 Identities=19% Similarity=0.244 Sum_probs=31.2
Q ss_pred eEEcCCCCCccEEEECCeEEEEEEeEEecCCCC--CeEEEEEEeeCCCCCeEEEEeC
Q 026237 58 KVNASHVRPGNVIEKSGKMYQVIDAEHKQRGRG--GAMMQMELRDIDTGNKVSLRFG 112 (241)
Q Consensus 58 ~i~a~dirkG~~I~~dG~py~V~~~~h~KpGKG--~A~vriklknL~TG~k~e~tf~ 112 (241)
...+.||++|+.+.+.|....+-+......-.| +-...+.+.| .||...---|.
T Consensus 2 ~~kI~dl~~g~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~D-eTG~I~~tlW~ 57 (97)
T 3e0e_A 2 NYKISELMPNLSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKD-DTGSIRGTLWN 57 (97)
T ss_dssp EECGGGCCTTEEEEEEEEEEEECCCEEEC----CCEEEEEEEEEE-TTEEEEEEEEG
T ss_pred CeEHHHCCCCCcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEEC-CCCcEEEEEEC
Confidence 456899999988877665554443333211124 3455788888 79944433354
No 58
>1eal_A Gastrotropin, ileal lipid binding protein; intracellular lipid binding protein, bIle acid binding, ileal epithelium, fatty acid binding protein; NMR {Sus scrofa} SCOP: b.60.1.2 PDB: 1eio_A* 1o1u_A 1o1v_A*
Probab=28.39 E-value=1.2e+02 Score=23.14 Aligned_cols=44 Identities=14% Similarity=0.212 Sum_probs=34.3
Q ss_pred EEEeeC-CCCCeEEEEeCCCCcEEeeeEEeeEEEEEEE-eCCEEEE
Q 026237 96 MELRDI-DTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFV 139 (241)
Q Consensus 96 iklknL-~TG~k~e~tf~s~dkve~v~ve~k~~qylY~-Dgd~~~F 139 (241)
+.++.. .+.+..+.+|.-|+.+|.-.++-+.++-++. ||+.++-
T Consensus 47 ~~ikt~~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 92 (127)
T 1eal_A 47 FTWSQQYPGGHSITNTFTIGKECDIETIGGKKFKATVQMEGGKVVV 92 (127)
T ss_dssp EEEEEECSSSCEEEEEEESSSCEEEECSSSCEEEECCEECSSEEEE
T ss_pred EEEEEEECCCceEEEEEECCCcEEEECCCCCEEEEEEEEECCEEEE
Confidence 444555 5667888999999999999999888887776 7776554
No 59
>1ftp_A Muscle fatty acid binding protein; binding protein(fatty acid); 2.20A {Schistocerca gregaria} SCOP: b.60.1.2 PDB: 2flj_A*
Probab=28.34 E-value=94 Score=23.95 Aligned_cols=45 Identities=9% Similarity=0.174 Sum_probs=35.5
Q ss_pred EEEEeeCCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEE-eC-CEEEE
Q 026237 95 QMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-EN-DTAFV 139 (241)
Q Consensus 95 riklknL~TG~k~e~tf~s~dkve~v~ve~k~~qylY~-Dg-d~~~F 139 (241)
.+.++...+.+..+.+|.-|+.++.-.++-+.++-++. || +.++-
T Consensus 50 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~~t~eg~~kLv~ 96 (133)
T 1ftp_A 50 KFKLTSKTAIKNTEFTFKLGEEFDEETLDGRKVKSTITQDGPNKLVH 96 (133)
T ss_dssp EEEEEEECSSCEEEEEEETTCCEEEECTTSCEEEEEEEECSSSEEEE
T ss_pred EEEEEEEcCCeeEEEEEECCCcEEEECCCCCEEEEEEEEeCCCEEEE
Confidence 35566667788899999999999999999888877776 77 65554
No 60
>2g7b_A Cellular retinoic acid-binding protein 2; crabpii, retinoids, beta barrel, crystallography, X-RAY, high resolution, schiff base; HET: AZE; 1.18A {Homo sapiens} PDB: 3d97_A* 3fa8_A 3i17_B 3fa7_A* 3fa9_A 3d95_A 3cwk_A 3f8a_A* 3fep_A* 3fek_B 3fa6_A 1bm5_A 1xca_A 3fel_A* 3f9d_A* 3cr6_A* 3fen_A 1blr_A 1cbq_A* 1cbs_A* ...
Probab=26.28 E-value=1.3e+02 Score=23.29 Aligned_cols=45 Identities=16% Similarity=0.242 Sum_probs=33.8
Q ss_pred EEEEeeCCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEE-eC-CEEEE
Q 026237 95 QMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-EN-DTAFV 139 (241)
Q Consensus 95 riklknL~TG~k~e~tf~s~dkve~v~ve~k~~qylY~-Dg-d~~~F 139 (241)
++.++...+.+..+.+|.-|+.+|.-.++-+.++-++. || +.++-
T Consensus 49 ~~tikt~s~~kt~~~~F~lGeEfee~t~dgrk~ks~~t~egd~kLv~ 95 (137)
T 2g7b_A 49 TFYIKTSTTVRTTEINFKVGEEFEEQTVDGRPCKSLVKWESENKMVC 95 (137)
T ss_dssp EEEEEEEETTEEEEEEEETTSCEEEECTTSCEEEEEEEEEETTEEEE
T ss_pred EEEEEEEECCeEEEEEEecCCceEEECCCCCEEEEEEEEeCCCeEEE
Confidence 34555556677788999999999999999888877775 66 45544
No 61
>2lba_A BABP protein; ileal bIle acid binding protein, lipid binding protein; HET: CHO; NMR {Gallus gallus}
Probab=25.96 E-value=1.1e+02 Score=23.80 Aligned_cols=45 Identities=9% Similarity=0.169 Sum_probs=35.5
Q ss_pred EEEEeeC-CCCCeEEEEeCCCCcEEeeeEEeeEEEEEEE-eCCEEEE
Q 026237 95 QMELRDI-DTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFV 139 (241)
Q Consensus 95 riklknL-~TG~k~e~tf~s~dkve~v~ve~k~~qylY~-Dgd~~~F 139 (241)
++.++.. .+.+..+.+|.-|+.+|.-.++-+.++-++. ||+.++.
T Consensus 51 ~~tikt~~s~~kt~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 97 (136)
T 2lba_A 51 DFTWTQHFPGGRTTTNSFTIDKEADMETMGGRKFKATVKMEGGKIVA 97 (136)
T ss_dssp EEEEEEECTTSCCEEEEEETTEEEEEECTTCCEEEEEEEESSSCEEE
T ss_pred EEEEEEEeCCCceEEEEEeCCCcEEEECCCCCEeeEEEEEECCEEEE
Confidence 3455566 6777888999999999999999888887777 7776655
No 62
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=24.94 E-value=2e+02 Score=22.84 Aligned_cols=43 Identities=12% Similarity=0.212 Sum_probs=28.5
Q ss_pred eEEEEEEEecCCCCCcCCCCCceeEEeecCcEEEc--c------ccccCCCEEEEECCC
Q 026237 185 RVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMV--P------SYLEIGEEIFINPQD 235 (241)
Q Consensus 185 ~V~l~V~et~p~~kGdT~~~~~K~A~LetG~~v~V--P------~FI~~Gd~I~V~T~~ 235 (241)
.+.-+|+++-| +..=.+.|++|.++.+ | ..|.+||+|.|....
T Consensus 32 e~~g~V~e~lg--------n~~f~V~l~nG~~~La~I~GKmRk~IwI~~GD~VlVe~~~ 82 (143)
T 1d7q_A 32 QEYAQVIKMLG--------NGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRD 82 (143)
T ss_dssp EEEEEEEEECS--------SSEEEEEETTTEEEEEECCSGGGGSCCCCTTCEEEEECSS
T ss_pred EEEEEEEEEcC--------CCEEEEEeCCCCEEEEEecccceeeEEecCCCEEEEeecc
Confidence 45566666643 3455677778877644 2 468889999997653
No 63
>3frn_A Flagellar protein FLGA; structural genomics, periplasmic, PSI-2, protein structure initiative; 2.05A {Thermotoga maritima}
Probab=23.43 E-value=1.5e+02 Score=26.21 Aligned_cols=30 Identities=10% Similarity=0.080 Sum_probs=23.4
Q ss_pred EEEEeeCCCCCeEEEEeCCCCcEEeeeEEe
Q 026237 95 QMELRDIDTGNKVSLRFGTEEAVERVFVED 124 (241)
Q Consensus 95 riklknL~TG~k~e~tf~s~dkve~v~ve~ 124 (241)
.+++||+.+|+.+.-+..++..|+.+.+-+
T Consensus 242 ~IRVrNl~SgkiV~G~V~~~G~Vrv~~~~~ 271 (278)
T 3frn_A 242 TVRAMNVESRKYVFGRVERGPVLRILEVVE 271 (278)
T ss_dssp EEEEEC--CCCEEEEEEETTTEEEECC---
T ss_pred EEEEEECCCCCEEEEEEecCCeEEEEEEEc
Confidence 899999999999999999999999887643
No 64
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1
Probab=22.68 E-value=1.3e+02 Score=23.32 Aligned_cols=44 Identities=14% Similarity=0.169 Sum_probs=30.4
Q ss_pred eeeEEcCCCCCccEEEE---CCeE--EEEEEeEEecCCCCCeEEEEEEe
Q 026237 56 AVKVNASHVRPGNVIEK---SGKM--YQVIDAEHKQRGRGGAMMQMELR 99 (241)
Q Consensus 56 ~~~i~a~dirkG~~I~~---dG~p--y~V~~~~h~KpGKG~A~vriklk 99 (241)
+..+.+.||+.|+.|.- +|++ -.|+.+-|..|..-..|++++..
T Consensus 13 G~~k~i~eL~~GD~Vla~d~~G~~~~s~V~~~~~r~~~~~~~f~~I~t~ 61 (145)
T 1at0_A 13 GVRKPLGELSIGDRVLSMTANGQAVYSEVILFMDRNLEQMQNFVQLHTD 61 (145)
T ss_dssp SCEEEGGGCCTTCEEEEECTTSCEEEEEEEEEEEEEEEEEEEEEEEEET
T ss_pred CCEeEHHHcCCCCEEEEECCCCCEEEEEEEEEEeeCCCcceeEEEEEEC
Confidence 34467889999999863 5753 57788877666444567777653
No 65
>3elx_A Ileal bIle acid-binding protein; ileal bIle acid-bindign protein, zebrafish, cholic acid, LIP binding, transport, lipid binding protein; 1.60A {Danio rerio} SCOP: b.60.1.0 PDB: 3elz_A* 3em0_A*
Probab=22.40 E-value=1e+02 Score=24.09 Aligned_cols=44 Identities=14% Similarity=0.151 Sum_probs=33.7
Q ss_pred EEEeeCCC-CCeEEEEeCCCCcEEeeeEEeeEEEEEEE-eCCEEEE
Q 026237 96 MELRDIDT-GNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFV 139 (241)
Q Consensus 96 iklknL~T-G~k~e~tf~s~dkve~v~ve~k~~qylY~-Dgd~~~F 139 (241)
+.++...+ .+..+..|.-|+.+|.-.++-+.++-++. ||+.++-
T Consensus 51 ~tikt~s~~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 96 (138)
T 3elx_A 51 FTWTQYYPNNHVVTNKFIVGKESDMETVGGKKFKGIVSMEGGKLTI 96 (138)
T ss_dssp EEEEEEEGGGEEEEEEEETTSCEEEECTTSCEEEECCEEETTEEEE
T ss_pred EEEEEEEcCCceEEEEEEcCCcEEeecCCCCEEEEEEEEECCEEEE
Confidence 44455556 67788999999999999888888887775 7777664
No 66
>3vg7_A Fatty acid-binding protein, liver; lfabp, S-SAD, copper kalpha, palmitic acid, lipid binding PR; HET: PLM; 1.44A {Homo sapiens} PDB: 3b2i_A* 3b2j_A* 3b2k_A* 3b2l_A* 3stk_A* 3stm_X* 3stn_A 3vg2_A* 3vg3_A* 3vg4_A* 3vg5_A* 3vg6_A* 3b2h_A* 2py1_A 2l67_A 2l68_A 2lkk_A* 2ju3_A 2ju7_A 2ju8_A* ...
Probab=22.35 E-value=1.5e+02 Score=22.91 Aligned_cols=44 Identities=9% Similarity=0.105 Sum_probs=33.2
Q ss_pred EEEeeCCCCCeEEEEeCCCCcEEeeeEEeeEEEEEEE-eC-CEEEE
Q 026237 96 MELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-EN-DTAFV 139 (241)
Q Consensus 96 iklknL~TG~k~e~tf~s~dkve~v~ve~k~~qylY~-Dg-d~~~F 139 (241)
+.++...+.+..+..|.-|+.+|.-.++-+.++-++. || +.++-
T Consensus 51 ~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~egd~kLv~ 96 (132)
T 3vg7_A 51 FKFTITAGSKVIQNEFTVGEECELETMTGEKVKTVVQLEGDNKLVT 96 (132)
T ss_dssp EEEEEEETTEEEEEEEETTSEEEEECTTSCEEEEECEESSTTEEEE
T ss_pred EEEEEEEcCceEEEEEECCCcEEeECCCCCEEEEEEEEecCCeEEE
Confidence 4445555667788999999999999898888887775 66 55554
No 67
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=21.94 E-value=35 Score=26.26 Aligned_cols=30 Identities=10% Similarity=0.144 Sum_probs=21.8
Q ss_pred EeecCcEE--EccccccCCCEEEEECCCCcee
Q 026237 210 LLDNGVTV--MVPSYLEIGEEIFINPQDDSYI 239 (241)
Q Consensus 210 ~LetG~~v--~VP~FI~~Gd~I~V~T~~g~Yv 239 (241)
|.=||..| ..|.-++.||.|++=..+.+|+
T Consensus 96 T~vNg~ri~~~~~~~L~~GD~I~~G~str~yv 127 (130)
T 4h87_A 96 TFLNKTRIPPRTYCRVHVGHVVRFGGSTRLFI 127 (130)
T ss_dssp EEETTEECCTTCCEECCTTCEEEETTCSEEEE
T ss_pred eEECCEECCCCceeECCCCCEEEECCceEEEE
Confidence 34477666 3466688999999977777786
No 68
>2vqe_Q 30S ribosomal protein S17; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: b.40.4.5 PDB: 1gix_T* 1hnw_Q* 1hnx_Q* 1hnz_Q* 1hr0_Q 1ibk_Q* 1ibl_Q* 1ibm_Q 1jgo_T* 1jgp_T* 1jgq_T* 1ml5_T* 1xmo_Q* 1xmq_Q* 1xnq_Q* 1xnr_Q* 1yl4_T 2b64_Q* 2b9m_Q* 2b9o_Q* ...
Probab=20.64 E-value=2.4e+02 Score=21.24 Aligned_cols=54 Identities=13% Similarity=0.113 Sum_probs=36.9
Q ss_pred ECCEEEEEeCCCeEEEEEEEecCCCCCcCCCCCceeEEeecCcEEEcccc-ccCCCEEEEE
Q 026237 173 YDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSY-LEIGEEIFIN 232 (241)
Q Consensus 173 ~dg~~i~v~lP~~V~l~V~et~p~~kGdT~~~~~K~A~LetG~~v~VP~F-I~~Gd~I~V~ 232 (241)
..|.+++-.+..+|+..|.....- .--.|-..-.+-..+--|.+ +++||.|.|-
T Consensus 6 l~G~VvS~Km~KTivV~ver~~~h------pkY~K~~kr~kk~~aHDe~n~~k~GD~V~I~ 60 (105)
T 2vqe_Q 6 LTGVVVSDKMQKTVTVLVERQFPH------PLYGKVIKRSKKYLAHDPEEKYKLGDVVEII 60 (105)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEC------TTTCCEEEEEEEEEEECTTCCCCTTCEEEEE
T ss_pred EEEEEEecCCCcEEEEEEEEEEEc------CccceEEecceEEEEECCCCCCCCCCEEEEE
Confidence 458899999999999999887542 12334444444444555554 8889999984
No 69
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=20.50 E-value=1.8e+02 Score=19.49 Aligned_cols=44 Identities=16% Similarity=0.115 Sum_probs=29.9
Q ss_pred eCCEEEEEeCCCccccccCchhhhhh-hhccCCCCEEEEEEECCE
Q 026237 133 ENDTAFVIESETFEQLEVPLDVFGKA-GAYLQEGMKVWLQLYDGR 176 (241)
Q Consensus 133 Dgd~~~FMD~EtyEQi~v~~~~lgd~-~~~L~eg~~v~v~~~dg~ 176 (241)
+...|=|..++.-+++-+....+... ..-|.+|+.|+....++.
T Consensus 10 ~~kGfGFI~~~~g~dvFvH~s~i~~~g~~~l~~G~~V~f~~~~~~ 54 (66)
T 1g6p_A 10 SKKGYGFITKDEGGDVFVHWSAIEMEGFKTLKEGQVVEFEIQEGK 54 (66)
T ss_dssp TTTTEEEEEETTSCBCBBCSSSSCCSSCCCCCSSSEEEEEEECSS
T ss_pred CCCCEEEEecCCCceEEEEhHHccccCCCCCCCCCEEEEEEEECC
Confidence 34456666665558888877766543 356999999998876653
No 70
>2jv2_A Putative uncharacterized protein PH1500; AAA ATPase NC-domain-like, unknown function; NMR {Pyrococcus horikoshii}
Probab=20.28 E-value=85 Score=22.60 Aligned_cols=25 Identities=16% Similarity=0.226 Sum_probs=18.9
Q ss_pred CCCCEEEEEEECCEEEEEeCCCeEEEEEEEecCC
Q 026237 163 QEGMKVWLQLYDGRALSGSIPKRVACTIKEIHAS 196 (241)
Q Consensus 163 ~eg~~v~v~~~dg~~i~v~lP~~V~l~V~et~p~ 196 (241)
..|+.+.+.++. ..+.|.|++|+|.
T Consensus 43 ~~GD~I~i~~~G---------~~i~F~Vv~t~P~ 67 (83)
T 2jv2_A 43 RTGDVIGISILG---------KEVKFKVVQAYPS 67 (83)
T ss_dssp CTTCEEEEEETT---------EEEEEEEEEEESS
T ss_pred cCCCEEEEeeCC---------CEEEEEEEEecCc
Confidence 677777765533 7788999999983
Done!