Query 026238
Match_columns 241
No_of_seqs 145 out of 1769
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 05:25:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026238.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026238hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06027 DUF914: Eukaryotic pr 100.0 1.8E-28 3.8E-33 210.7 25.2 227 11-237 3-237 (334)
2 PLN00411 nodulin MtN21 family 99.9 2.6E-20 5.7E-25 162.9 25.4 201 19-220 11-242 (358)
3 PRK11272 putative DMT superfam 99.9 1E-19 2.2E-24 155.6 25.1 185 22-217 8-197 (292)
4 KOG2766 Predicted membrane pro 99.9 1.9E-23 4.2E-28 168.6 1.0 218 16-234 13-231 (336)
5 PRK11689 aromatic amino acid e 99.9 4.7E-20 1E-24 157.9 21.0 174 22-199 5-187 (295)
6 TIGR00950 2A78 Carboxylate/Ami 99.9 1.3E-19 2.7E-24 152.1 21.8 176 34-219 2-180 (260)
7 TIGR00688 rarD rarD protein. T 99.8 1.1E-18 2.4E-23 146.4 23.6 158 21-192 2-170 (256)
8 PRK11453 O-acetylserine/cystei 99.8 1.6E-18 3.4E-23 148.8 24.1 176 24-209 7-187 (299)
9 PRK15430 putative chlorampheni 99.8 1.5E-18 3.3E-23 148.7 23.6 162 17-192 4-173 (296)
10 PRK10532 threonine and homoser 99.8 7.3E-18 1.6E-22 144.3 22.9 193 13-219 4-197 (293)
11 TIGR00817 tpt Tpt phosphate/ph 99.8 4.8E-18 1E-22 145.9 20.6 171 38-217 19-195 (302)
12 PTZ00343 triose or hexose phos 99.8 9.8E-17 2.1E-21 140.5 23.5 170 38-217 66-249 (350)
13 TIGR03340 phn_DUF6 phosphonate 99.8 1.4E-16 3E-21 135.5 20.4 164 23-196 3-172 (281)
14 COG0697 RhaT Permeases of the 99.7 1.2E-14 2.7E-19 122.9 23.0 181 18-205 4-191 (292)
15 KOG4510 Permease of the drug/m 99.6 4.7E-17 1E-21 132.6 2.2 197 19-219 36-242 (346)
16 TIGR00776 RhaT RhaT L-rhamnose 99.5 1.4E-12 3.1E-17 111.4 18.9 175 22-203 2-185 (290)
17 PF08449 UAA: UAA transporter 99.5 3.4E-12 7.4E-17 109.8 20.6 182 36-217 15-205 (303)
18 COG2962 RarD Predicted permeas 99.5 1.1E-11 2.3E-16 103.0 21.3 184 20-219 6-197 (293)
19 KOG2765 Predicted membrane pro 99.5 2.2E-12 4.9E-17 110.0 14.9 131 82-212 160-295 (416)
20 COG5006 rhtA Threonine/homoser 99.5 2.4E-11 5.2E-16 98.8 19.8 178 29-219 20-198 (292)
21 COG2510 Predicted membrane pro 99.5 1.7E-12 3.6E-17 94.9 11.8 129 22-152 4-138 (140)
22 PF00892 EamA: EamA-like trans 99.4 1.1E-12 2.3E-17 97.4 9.6 118 32-152 2-125 (126)
23 PF04142 Nuc_sug_transp: Nucle 99.4 1.1E-10 2.5E-15 97.1 18.0 162 78-239 14-191 (244)
24 TIGR00950 2A78 Carboxylate/Ami 99.4 3.9E-11 8.4E-16 100.6 15.5 131 18-148 125-259 (260)
25 PF13536 EmrE: Multidrug resis 99.3 2.1E-11 4.6E-16 89.7 11.2 99 56-155 2-108 (113)
26 KOG2234 Predicted UDP-galactos 99.3 1.7E-08 3.6E-13 86.3 25.8 212 29-240 23-261 (345)
27 KOG3912 Predicted integral mem 99.2 9.2E-10 2E-14 90.9 17.3 165 48-212 36-222 (372)
28 PRK10532 threonine and homoser 99.2 3.2E-09 6.9E-14 90.9 17.6 133 20-155 147-283 (293)
29 PRK11272 putative DMT superfam 99.1 4.8E-09 1E-13 89.8 15.3 133 20-155 149-287 (292)
30 PLN00411 nodulin MtN21 family 99.0 2.3E-08 5E-13 87.8 15.9 137 18-155 186-330 (358)
31 PRK11689 aromatic amino acid e 98.9 3.2E-08 6.9E-13 84.8 14.5 131 20-155 155-289 (295)
32 PRK11453 O-acetylserine/cystei 98.9 9E-08 2E-12 82.2 17.0 136 20-155 142-289 (299)
33 TIGR03340 phn_DUF6 phosphonate 98.9 3.5E-08 7.6E-13 83.9 13.1 130 21-150 144-280 (281)
34 TIGR00817 tpt Tpt phosphate/ph 98.8 7.4E-08 1.6E-12 82.8 13.7 136 20-155 144-295 (302)
35 PRK15430 putative chlorampheni 98.8 1.6E-07 3.5E-12 80.5 13.6 70 86-155 218-287 (296)
36 KOG1441 Glucose-6-phosphate/ph 98.8 4.3E-08 9.3E-13 84.0 9.9 173 41-220 37-219 (316)
37 PF03151 TPT: Triose-phosphate 98.8 6.1E-07 1.3E-11 69.1 15.5 130 22-151 1-151 (153)
38 TIGR00776 RhaT RhaT L-rhamnose 98.7 2.9E-07 6.3E-12 78.8 13.7 130 19-153 150-288 (290)
39 KOG4314 Predicted carbohydrate 98.7 2.7E-07 5.8E-12 72.9 10.8 122 91-217 63-187 (290)
40 COG0697 RhaT Permeases of the 98.7 1.5E-06 3.2E-11 73.3 16.4 133 19-154 152-288 (292)
41 PRK15051 4-amino-4-deoxy-L-ara 98.7 2E-07 4.3E-12 68.2 9.2 66 88-153 43-109 (111)
42 PTZ00343 triose or hexose phos 98.6 2.4E-06 5.2E-11 75.0 16.7 133 20-152 193-347 (350)
43 PF06800 Sugar_transport: Suga 98.6 7.4E-06 1.6E-10 68.7 18.1 160 50-212 11-179 (269)
44 KOG1444 Nucleotide-sugar trans 98.5 1.4E-05 3E-10 67.8 17.1 190 22-219 13-210 (314)
45 COG5006 rhtA Threonine/homoser 98.4 6.7E-06 1.5E-10 67.4 13.0 129 21-151 148-280 (292)
46 KOG1581 UDP-galactose transpor 98.3 0.00023 4.9E-09 60.0 19.3 165 48-212 48-218 (327)
47 PRK02971 4-amino-4-deoxy-L-ara 98.3 5.7E-06 1.2E-10 62.1 8.6 72 84-155 50-124 (129)
48 KOG1443 Predicted integral mem 98.2 8.6E-05 1.9E-09 62.6 14.8 166 48-221 42-222 (349)
49 PF08449 UAA: UAA transporter 98.1 0.00024 5.3E-09 61.1 15.5 134 22-155 155-299 (303)
50 PF05653 Mg_trans_NIPA: Magnes 98.1 5.4E-05 1.2E-09 65.0 11.3 122 16-155 2-124 (300)
51 KOG1580 UDP-galactose transpor 98.0 4.1E-05 8.9E-10 62.3 9.5 131 81-212 85-218 (337)
52 PRK13499 rhamnose-proton sympo 98.0 0.00097 2.1E-08 58.1 18.4 165 17-185 3-191 (345)
53 KOG1442 GDP-fucose transporter 98.0 3.5E-05 7.6E-10 64.0 7.8 168 48-220 58-238 (347)
54 COG5070 VRG4 Nucleotide-sugar 97.9 0.00047 1E-08 55.8 12.9 145 80-224 67-213 (309)
55 PRK09541 emrE multidrug efflux 97.9 0.0003 6.5E-09 51.3 10.5 68 87-154 35-104 (110)
56 PF06800 Sugar_transport: Suga 97.8 0.00021 4.5E-09 60.0 10.7 127 17-149 134-267 (269)
57 PRK10650 multidrug efflux syst 97.8 0.00099 2.1E-08 48.4 12.1 63 89-151 42-106 (109)
58 PF04657 DUF606: Protein of un 97.8 0.0014 3E-08 49.8 13.2 127 23-150 3-138 (138)
59 COG2076 EmrE Membrane transpor 97.8 0.00069 1.5E-08 48.6 10.6 68 86-153 34-103 (106)
60 PRK10452 multidrug efflux syst 97.7 0.00086 1.9E-08 49.6 10.8 69 87-155 35-105 (120)
61 PRK11431 multidrug efflux syst 97.7 0.001 2.2E-08 48.0 10.9 64 89-152 36-101 (105)
62 KOG1583 UDP-N-acetylglucosamin 97.7 0.00015 3.2E-09 60.4 7.2 183 30-212 11-210 (330)
63 PF06027 DUF914: Eukaryotic pr 97.7 0.0019 4.2E-08 56.2 14.1 137 17-155 164-307 (334)
64 KOG1582 UDP-galactose transpor 97.6 0.0003 6.4E-09 58.5 7.8 197 18-217 39-241 (367)
65 KOG4510 Permease of the drug/m 97.4 8.5E-05 1.8E-09 61.6 2.0 130 22-153 192-325 (346)
66 COG4975 GlcU Putative glucose 97.3 3.5E-05 7.6E-10 63.0 -1.6 165 22-190 3-174 (288)
67 PF00893 Multi_Drug_Res: Small 97.1 0.0053 1.1E-07 43.3 8.9 57 88-144 35-93 (93)
68 TIGR00688 rarD rarD protein. T 97.1 0.0098 2.1E-07 49.7 11.6 49 80-128 207-255 (256)
69 TIGR00803 nst UDP-galactose tr 97.1 0.0071 1.5E-07 49.5 10.4 65 86-150 157-221 (222)
70 PF10639 UPF0546: Uncharacteri 96.9 0.0029 6.2E-08 46.1 5.8 68 84-151 44-112 (113)
71 KOG1441 Glucose-6-phosphate/ph 96.7 0.0067 1.5E-07 52.3 7.4 137 19-155 161-309 (316)
72 COG2962 RarD Predicted permeas 96.6 0.13 2.8E-06 43.5 14.3 75 81-155 211-285 (293)
73 PRK13499 rhamnose-proton sympo 96.6 0.16 3.4E-06 44.5 15.2 138 15-154 168-342 (345)
74 COG3238 Uncharacterized protei 96.5 0.13 2.8E-06 39.4 12.7 129 22-151 6-144 (150)
75 KOG1580 UDP-galactose transpor 96.3 0.066 1.4E-06 44.0 10.5 73 81-153 241-313 (337)
76 KOG2765 Predicted membrane pro 96.0 0.076 1.7E-06 46.4 10.1 138 18-155 244-392 (416)
77 KOG2922 Uncharacterized conser 96.0 0.0048 1E-07 52.7 2.6 121 16-155 16-138 (335)
78 KOG1581 UDP-galactose transpor 95.9 0.093 2E-06 44.6 9.8 134 19-152 170-312 (327)
79 PF06379 RhaT: L-rhamnose-prot 95.8 0.5 1.1E-05 41.1 14.0 168 18-189 4-194 (344)
80 PF04142 Nuc_sug_transp: Nucle 95.7 0.29 6.2E-06 40.9 12.1 127 17-143 110-243 (244)
81 TIGR00803 nst UDP-galactose tr 95.0 0.32 6.9E-06 39.7 10.1 88 107-194 4-111 (222)
82 PRK02237 hypothetical protein; 94.4 1.2 2.6E-05 32.1 10.3 50 106-155 57-107 (109)
83 COG4975 GlcU Putative glucose 93.8 0.0078 1.7E-07 49.6 -2.0 130 18-151 149-283 (288)
84 PF03151 TPT: Triose-phosphate 93.6 0.27 5.9E-06 37.3 6.5 54 169-222 1-61 (153)
85 PF02694 UPF0060: Uncharacteri 93.3 1 2.2E-05 32.3 8.3 54 102-155 51-105 (107)
86 KOG1583 UDP-N-acetylglucosamin 93.1 1.6 3.5E-05 36.9 10.3 136 18-153 161-314 (330)
87 KOG1444 Nucleotide-sugar trans 92.8 1.5 3.4E-05 37.6 10.1 135 21-155 157-302 (314)
88 KOG1582 UDP-galactose transpor 92.0 2.1 4.5E-05 36.2 9.6 114 42-155 211-334 (367)
89 PF00892 EamA: EamA-like trans 91.6 0.37 8E-06 34.7 4.6 42 178-220 1-42 (126)
90 KOG1443 Predicted integral mem 89.0 14 0.00031 31.9 12.6 131 21-151 164-313 (349)
91 KOG1442 GDP-fucose transporter 89.0 0.64 1.4E-05 39.2 4.2 135 19-153 183-327 (347)
92 COG1742 Uncharacterized conser 88.6 7.1 0.00015 27.9 8.6 40 116-155 67-106 (109)
93 KOG4831 Unnamed protein [Funct 88.5 1.1 2.4E-05 32.1 4.5 70 83-152 54-124 (125)
94 KOG2234 Predicted UDP-galactos 88.2 17 0.00037 31.8 14.7 138 16-153 178-322 (345)
95 COG2510 Predicted membrane pro 88.0 2.8 6.2E-05 31.3 6.6 47 169-215 4-50 (140)
96 COG5070 VRG4 Nucleotide-sugar 85.2 5.9 0.00013 32.6 7.6 107 47-153 181-296 (309)
97 KOG3912 Predicted integral mem 78.6 42 0.00091 28.8 10.8 136 17-152 172-333 (372)
98 PF07857 DUF1632: CEO family ( 76.9 5.4 0.00012 33.5 5.0 60 18-77 180-249 (254)
99 PF04342 DUF486: Protein of un 74.1 4.4 9.6E-05 29.0 3.2 32 120-151 75-106 (108)
100 COG4657 RnfA Predicted NADH:ub 72.7 22 0.00048 27.6 6.9 80 125-211 89-181 (193)
101 COG3169 Uncharacterized protei 68.0 14 0.00031 26.1 4.5 31 122-152 84-114 (116)
102 PF06379 RhaT: L-rhamnose-prot 65.0 98 0.0021 27.2 15.4 139 13-152 165-339 (344)
103 PF04657 DUF606: Protein of un 64.9 45 0.00097 25.1 7.3 52 169-220 2-54 (138)
104 PF07857 DUF1632: CEO family ( 62.8 93 0.002 26.2 11.5 162 26-192 5-207 (254)
105 PF05653 Mg_trans_NIPA: Magnes 62.7 32 0.0007 29.6 6.9 61 95-155 227-294 (300)
106 KOG4314 Predicted carbohydrate 61.8 86 0.0019 25.5 11.4 138 17-155 131-278 (290)
107 PF09930 DUF2162: Predicted tr 61.3 92 0.002 25.7 10.5 49 7-55 86-134 (224)
108 PRK15071 lipopolysaccharide AB 54.9 49 0.0011 28.9 6.9 39 22-60 304-342 (356)
109 PF09656 PGPGW: Putative trans 54.8 50 0.0011 20.6 5.2 44 136-191 4-47 (53)
110 PF06963 FPN1: Ferroportin1 (F 41.2 2.8E+02 0.0061 25.3 12.1 58 6-64 248-305 (432)
111 PRK10209 acid-resistance membr 39.8 1.9E+02 0.0041 22.9 12.6 17 139-155 85-101 (190)
112 PF06570 DUF1129: Protein of u 39.7 2E+02 0.0043 23.1 11.6 31 78-108 143-173 (206)
113 TIGR00751 menA 1,4-dihydroxy-2 39.3 2.4E+02 0.0052 24.0 9.6 71 80-151 107-181 (284)
114 COG3086 RseC Positive regulato 38.4 60 0.0013 24.8 4.0 26 103-128 70-95 (150)
115 PRK10862 SoxR reducing system 38.1 49 0.0011 25.5 3.7 24 105-128 72-95 (154)
116 PF10031 DUF2273: Small integr 37.9 97 0.0021 19.0 4.3 31 9-41 2-32 (51)
117 PF04246 RseC_MucC: Positive r 37.5 51 0.0011 24.5 3.7 42 106-148 66-107 (135)
118 PF01654 Bac_Ubq_Cox: Bacteria 36.5 3.4E+02 0.0073 24.8 14.3 38 168-205 216-253 (436)
119 CHL00196 psbY photosystem II p 35.4 54 0.0012 18.6 2.6 22 168-189 6-27 (36)
120 COG0670 Integral membrane prot 34.4 2.7E+02 0.0058 23.1 18.8 27 167-193 170-196 (233)
121 COG3238 Uncharacterized protei 32.1 2.4E+02 0.0051 21.7 7.5 52 167-218 4-56 (150)
122 PRK10213 nepI ribonucleoside t 31.6 3.6E+02 0.0077 23.6 12.8 19 130-148 79-97 (394)
123 COG4858 Uncharacterized membra 28.8 3.1E+02 0.0067 22.1 7.7 45 80-127 160-204 (226)
124 PF11023 DUF2614: Protein of u 26.2 1.9E+02 0.0041 21.1 4.7 24 130-153 5-28 (114)
125 PRK13240 pbsY photosystem II p 26.1 91 0.002 18.2 2.5 22 168-189 6-27 (40)
126 PF06298 PsbY: Photosystem II 25.5 1.1E+02 0.0024 17.4 2.7 22 168-189 6-27 (36)
127 PF06609 TRI12: Fungal trichot 25.4 6E+02 0.013 24.3 17.7 21 131-151 377-397 (599)
128 TIGR02611 conserved hypothetic 25.0 2.9E+02 0.0062 20.4 5.5 41 137-189 29-69 (121)
129 PF10754 DUF2569: Protein of u 24.8 2.7E+02 0.0059 21.0 5.8 27 164-190 117-143 (149)
130 COG3965 Predicted Co/Zn/Cd cat 23.4 4.7E+02 0.01 22.3 11.8 112 21-134 96-214 (314)
131 PRK15120 lipopolysaccharide AB 23.3 5.1E+02 0.011 22.6 8.2 45 21-65 297-341 (366)
132 PF03631 Virul_fac_BrkB: Virul 22.7 4.3E+02 0.0094 21.6 12.0 14 53-66 160-173 (260)
133 KOG2322 N-methyl-D-aspartate r 22.2 4.3E+02 0.0094 21.9 6.7 35 167-201 194-229 (237)
134 PF04550 Phage_holin_2: Phage 22.1 2.8E+02 0.0061 19.3 5.6 53 128-190 25-83 (89)
135 PF14715 FixP_N: N-terminal do 22.1 1.6E+02 0.0035 18.1 3.3 11 3-13 16-26 (51)
136 PF08370 PDR_assoc: Plant PDR 21.6 70 0.0015 20.8 1.7 29 80-108 27-57 (65)
137 PF05915 DUF872: Eukaryotic pr 20.7 3E+02 0.0065 20.0 5.0 11 19-29 40-50 (115)
No 1
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.97 E-value=1.8e-28 Score=210.67 Aligned_cols=227 Identities=44% Similarity=0.773 Sum_probs=201.2
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhhhh------hhhhHHHH
Q 026238 11 WRSHVTLRTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQR------LRVAWYWY 84 (241)
Q Consensus 11 ~~~~~~~~~~~g~~l~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~i~l~~~~~~~~~~------~~~~~~~~ 84 (241)
|+..+++++++++++||+++++.++++..++.+.+.+..-|..+++.-|..-.++..+...+|++. .+++++++
T Consensus 3 ~~~~~~~~~~~~~~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y 82 (334)
T PF06027_consen 3 KSFLFTRRFWIVLLLGQVLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKY 82 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHH
Confidence 455688999999999999999999999999999988777799999999988888777766555432 46778999
Q ss_pred HHHHHHHHHHHHHHHHHhhccchhhhhhhhhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhcccCCC--CCCCC
Q 026238 85 LLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAG--GDGGG 162 (241)
Q Consensus 85 l~~~~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li~~~~~~--~~~~~ 162 (241)
++.+++.+.+|++...|++||+.+.++++.++.-+++++++++++|||.++.|++|++++++|+.++...|.. +.++.
T Consensus 83 ~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~ 162 (334)
T PF06027_consen 83 FLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSS 162 (334)
T ss_pred HHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999877641 12223
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhHHHhh
Q 026238 163 GSRPLLGDVLVIAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNIVSNLL 237 (241)
Q Consensus 163 ~~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l 237 (241)
+.++.+||++++.|++.||++++..|+..++.++.++.++.+++|.++..+...++|+.+.++.+|++..+..++
T Consensus 163 ~~~~i~GDll~l~~a~lya~~nV~~E~~v~~~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v 237 (334)
T PF06027_consen 163 GSNPILGDLLALLGAILYAVSNVLEEKLVKKAPRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLV 237 (334)
T ss_pred CCccchhHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHH
Confidence 567789999999999999999999999999999999999999999999988888899998888899988766544
No 2
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.88 E-value=2.6e-20 Score=162.88 Aligned_cols=201 Identities=16% Similarity=0.132 Sum_probs=153.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhhh--h-h---hhhHHHHHHHHHHHH
Q 026238 19 TLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQ--R-L---RVAWYWYLLLGFVDV 92 (241)
Q Consensus 19 ~~~g~~l~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~i~l~~~~~~~~~--~-~---~~~~~~~l~~~~~~~ 92 (241)
..+...--+.+-.++.+....+|...+ .+.+|....++|+.+++++++++...+++ + . ++++.++.+.|+++.
T Consensus 11 ~~~~~~~~~~~q~~~~~~~~~~k~a~~-~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g~ 89 (358)
T PLN00411 11 EAVFLTAMLATETSVVGISTLFKVATS-KGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLGS 89 (358)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHH-CCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHH
Confidence 344555555566678888989998885 46778999999999999999888764322 1 1 233566777788774
Q ss_pred HHHHHHHHHhhccchhhhhhhhhchHHHHHHHHHHH------hcccchHHHHHHHHHHHHHhHhhcccCCCCC-------
Q 026238 93 QGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLF------LGTRYSLWQLLGAALCVLGLGLVLLSDAGGD------- 159 (241)
Q Consensus 93 ~~~~~~~~al~~~~~~~a~~l~~~~Pv~~~l~~~~~------l~ek~~~~~~~g~~l~~~Gv~li~~~~~~~~------- 159 (241)
..+.+++.|++|+++++++++.++.|+++.++++++ +|||+++++++|++++++|+.++..+++...
T Consensus 90 ~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~ 169 (358)
T PLN00411 90 MYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPP 169 (358)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccccccc
Confidence 337789999999999999999999999999999999 6999999999999999999998875431000
Q ss_pred ----------C-CCCCcchhHHHHHHHHHHHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHHHHHHHHHHhhh
Q 026238 160 ----------G-GGGSRPLLGDVLVIAGTIFFATSNVGEEFFVKKKDR-VEVVCMIGVYGLLVSAVQLSILEL 220 (241)
Q Consensus 160 ----------~-~~~~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~ 220 (241)
. ..+.+...|+.+.+.|+++||.|+++.||..+++++ ...+++++.++.+...++....|+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~ 242 (358)
T PLN00411 170 YLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEK 242 (358)
T ss_pred cccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHcc
Confidence 0 011122459999999999999999999999888765 456677777777666555555554
No 3
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.87 E-value=1e-19 Score=155.61 Aligned_cols=185 Identities=15% Similarity=0.114 Sum_probs=140.8
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhhhh--hhhhHHHHHHHHHHHHHH-HHH
Q 026238 22 LLFLGQL-VSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQR--LRVAWYWYLLLGFVDVQG-NFL 97 (241)
Q Consensus 22 g~~l~~~-~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~i~l~~~~~~~~~~--~~~~~~~~l~~~~~~~~~-~~~ 97 (241)
.+++..+ ..+.|+.+....|... ++.+|...++.|+.++++++++++..++++ .+++++.....|.++... +.+
T Consensus 8 ~~~~~~~~~~~iWg~~~~~~K~~~--~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 85 (292)
T PRK11272 8 PLFGALFALYIIWGSTYLVIRIGV--ESWPPLMMAGVRFLIAGILLLAFLLLRGHPLPTLRQWLNAALIGLLLLAVGNGM 85 (292)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHh--ccCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444 5555666556666555 368999999999999999988877654432 344566667777776555 778
Q ss_pred HHHHh-hccchhhhhhhhhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhcccCCCCCCCCCCcchhHHHHHHHH
Q 026238 98 VNKAY-QFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVLVIAG 176 (241)
Q Consensus 98 ~~~al-~~~~~~~a~~l~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~G~~l~l~a 176 (241)
++.+. ++++++.++++.++.|+++++++.+ +|||+++++++|++++++|+.++..++. .+ ....|++++++|
T Consensus 86 ~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~-----~~-~~~~G~l~~l~a 158 (292)
T PRK11272 86 VTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGN-----LS-GNPWGAILILIA 158 (292)
T ss_pred HHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCcc-----cc-cchHHHHHHHHH
Confidence 88888 9999999999999999999999986 6999999999999999999998864431 12 234799999999
Q ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHH
Q 026238 177 TIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSI 217 (241)
Q Consensus 177 ~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 217 (241)
+++||.|.+..||..++ ++...+.++...+.+.+. +...
T Consensus 159 ~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~ 197 (292)
T PRK11272 159 SASWAFGSVWSSRLPLP-VGMMAGAAEMLAAGVVLL-IASL 197 (292)
T ss_pred HHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHHHHH-HHHH
Confidence 99999999999997543 345566777777777664 4443
No 4
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.87 E-value=1.9e-23 Score=168.56 Aligned_cols=218 Identities=44% Similarity=0.828 Sum_probs=198.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 026238 16 TLRTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQRLRVAWYWYLLLGFVDVQGN 95 (241)
Q Consensus 16 ~~~~~~g~~l~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~i~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 95 (241)
++++++|+.+||++++|.++.++.++++++.+...|..++|..|.+-+++.-|...+|++..+.+|+.+++.++..+-+|
T Consensus 13 tkk~li~~~LGQiLSL~~t~~a~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~~~~~~~~~hYilla~~DVEaN 92 (336)
T KOG2766|consen 13 TKKTLIGLGLGQILSLLITSTAFTSSELARKGINAPTSQTFLNYVLLALVYGPIMLFRRKYIKAKWRHYILLAFVDVEAN 92 (336)
T ss_pred chhhhheeeHHHHHHHHHHcchhhhHHHHhccCCCccHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHhhheeEEeeccc
Confidence 88999999999999999999999999999888888999999999999999999988888777888888999999999999
Q ss_pred HHHHHHhhccchhhhhhhhhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhcccCCCCC-CCCCCcchhHHHHHH
Q 026238 96 FLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGD-GGGGSRPLLGDVLVI 174 (241)
Q Consensus 96 ~~~~~al~~~~~~~a~~l~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li~~~~~~~~-~~~~~~~~~G~~l~l 174 (241)
++...|+||++-..++++.+-....+.+++|+++|.|.++.++.|+.++++|+.++...|.... ...+.++.+||.+.+
T Consensus 93 y~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lvi 172 (336)
T KOG2766|consen 93 YFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLVI 172 (336)
T ss_pred EEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEEE
Confidence 9999999999999999999999999999999999999999999999999999999988775322 223567889999999
Q ss_pred HHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhHH
Q 026238 175 AGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNIVS 234 (241)
Q Consensus 175 ~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 234 (241)
+++-+||+.++..+...++.|..+.+...+++|.++..|. .++|.......+|++....
T Consensus 173 ~GATlYaVSNv~EEflvkn~d~~elm~~lgLfGaIIsaIQ-~i~~~~~~~tl~w~~~i~~ 231 (336)
T KOG2766|consen 173 AGATLYAVSNVSEEFLVKNADRVELMGFLGLFGAIISAIQ-FIFERHHVSTLHWDSAIFL 231 (336)
T ss_pred ecceeeeeccccHHHHHhcCcHHHHHHHHHHHHHHHHHHH-HhhhccceeeEeehHHHHH
Confidence 9999999999999999999999999999999999999877 7888888888899865543
No 5
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.86 E-value=4.7e-20 Score=157.93 Aligned_cols=174 Identities=18% Similarity=0.170 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH-HHHHHH
Q 026238 22 LLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQRLRVAWYWYLLLGFVDVQG-NFLVNK 100 (241)
Q Consensus 22 g~~l~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~i~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~ 100 (241)
+...+.+..++|+.+....|... +..||...++.|+.++++++.++.. +++.+++.++..+.+.++... ..+++.
T Consensus 5 ~~l~~l~a~~~Wg~~~~~~k~~~--~~~~P~~~~~~R~~~a~l~l~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (295)
T PRK11689 5 ATLIGLIAILLWSTMVGLIRGVS--ESLGPVGGAAMIYSVSGLLLLLTVG--FPRLRQFPKRYLLAGGLLFVSYEICLAL 80 (295)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH--ccCChHHHHHHHHHHHHHHHHHHcc--ccccccccHHHHHHHhHHHHHHHHHHHH
Confidence 55666667777777766777655 4689999999999999988876542 222233333444555555555 666777
Q ss_pred Hhhc----cchhhhhhhhhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhcccCCC-CCC---CCCCcchhHHHH
Q 026238 101 AYQF----SSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAG-GDG---GGGSRPLLGDVL 172 (241)
Q Consensus 101 al~~----~~~~~a~~l~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li~~~~~~-~~~---~~~~~~~~G~~l 172 (241)
++++ .++++++++.++.|+++.+++++++|||++++++.|++++++|+.++..++.. +.. +...+...|+.+
T Consensus 81 a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~G~~~ 160 (295)
T PRK11689 81 SLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIASNPLSYGL 160 (295)
T ss_pred HHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccccChHHHHH
Confidence 7754 67888999999999999999999999999999999999999999998865420 000 011123469999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCChHHH
Q 026238 173 VIAGTIFFATSNVGEEFFVKKKDRVEV 199 (241)
Q Consensus 173 ~l~a~~~~a~~~v~~~~~~~~~~~~~~ 199 (241)
+++|+++||.|+++.||..++.++...
T Consensus 161 ~l~aa~~~A~~~v~~k~~~~~~~~~~~ 187 (295)
T PRK11689 161 AFIGAFIWAAYCNVTRKYARGKNGITL 187 (295)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCchhH
Confidence 999999999999999998777777654
No 6
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.86 E-value=1.3e-19 Score=152.11 Aligned_cols=176 Identities=19% Similarity=0.086 Sum_probs=140.4
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH-HHHHHHHhhccchhhhhh
Q 026238 34 ALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQRLRVAWYWYLLLGFVDVQG-NFLVNKAYQFSSITSVTL 112 (241)
Q Consensus 34 ~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~i~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~al~~~~~~~a~~ 112 (241)
+.+....|...+ +..||....+.|+..+.+++.+...++ +.++++++....|.++... +.+++.|++|++++++++
T Consensus 2 g~~~~~~k~~~~-~~~~~~~~~~~r~~~~~l~l~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~i 78 (260)
T TIGR00950 2 GTTGVVIGQYLE-GQVPLYFAVFRRLIFALLLLLPLLRRR--PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAAL 78 (260)
T ss_pred cchHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHhc--cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHH
Confidence 445556666443 468899999999999888887765544 3445566777888777777 888999999999999999
Q ss_pred hhhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhcccCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 026238 113 LDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVLVIAGTIFFATSNVGEEFFVK 192 (241)
Q Consensus 113 l~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~~~~~~ 192 (241)
+.++.|+++++++++++|||++++++.|+.++++|+.++..++. ++....|+.+++.|+++|+.+.++.||..+
T Consensus 79 i~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~------~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~ 152 (260)
T TIGR00950 79 LLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGN------LSINPAGLLLGLGSGISFALGTVLYKRLVK 152 (260)
T ss_pred HHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCc------ccccHHHHHHHHHHHHHHHHHHHHHhHHhh
Confidence 99999999999999999999999999999999999999875431 234468999999999999999999999877
Q ss_pred cCCh--HHHHHHHHHHHHHHHHHHHHHhh
Q 026238 193 KKDR--VEVVCMIGVYGLLVSAVQLSILE 219 (241)
Q Consensus 193 ~~~~--~~~~~~~~~~~~~~~~i~~~~~~ 219 (241)
+.|+ .....+.+..+.+... +....+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~l~-~~~~~~ 180 (260)
T TIGR00950 153 KEGPELLQFTGWVLLLGALLLL-PFAWFL 180 (260)
T ss_pred cCCchHHHHHHHHHHHHHHHHH-HHHHhc
Confidence 7664 3455566777777775 554443
No 7
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.84 E-value=1.1e-18 Score=146.39 Aligned_cols=158 Identities=18% Similarity=0.100 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhh--h----hh----hhh-HHHHHHHHH
Q 026238 21 YLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRR--Q----RL----RVA-WYWYLLLGF 89 (241)
Q Consensus 21 ~g~~l~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~i~l~~~~~~~~--~----~~----~~~-~~~~l~~~~ 89 (241)
+|+....+++++|+.++...|.+. +.+|.++.++|+.++++++.+++..++ + +. +++ +......|.
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~~~---~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 78 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKLLK---PLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGL 78 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhc---cCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHH
Confidence 388888999999999999999743 489999999999999988776653221 1 11 111 122444555
Q ss_pred HHHHHHHHHHHHhhccchhhhhhhhhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhcccCCCCCCCCCCcchhH
Q 026238 90 VDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLG 169 (241)
Q Consensus 90 ~~~~~~~~~~~al~~~~~~~a~~l~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~G 169 (241)
+....+.+++.|++++++++++++.++.|+++++++++++|||++++++++++++++|+.++..++. +..
T Consensus 79 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~-------~~~--- 148 (256)
T TIGR00688 79 LIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKG-------SLP--- 148 (256)
T ss_pred HHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcC-------Cch---
Confidence 5444488999999999999999999999999999999999999999999999999999998865431 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 026238 170 DVLVIAGTIFFATSNVGEEFFVK 192 (241)
Q Consensus 170 ~~l~l~a~~~~a~~~v~~~~~~~ 192 (241)
.++++++++||.|.+..||..+
T Consensus 149 -~~~l~aa~~~a~~~i~~~~~~~ 170 (256)
T TIGR00688 149 -WEALVLAFSFTAYGLIRKALKN 170 (256)
T ss_pred -HHHHHHHHHHHHHHHHHhhcCC
Confidence 4678999999999999999744
No 8
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.84 E-value=1.6e-18 Score=148.77 Aligned_cols=176 Identities=19% Similarity=0.196 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH-HHHHHHHh
Q 026238 24 FLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQRLRVAWYWYLLLGFVDVQG-NFLVNKAY 102 (241)
Q Consensus 24 ~l~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~i~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~al 102 (241)
....+++++|+.+....|... ++.+|..+.++|+.++++.+.++..+++ ++++.....|...... ..+++.++
T Consensus 7 l~~l~~~~~Wg~~~~~~k~~~--~~~~p~~~~~~R~~~a~~~l~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~ 80 (299)
T PRK11453 7 VLALLVVVVWGLNFVVIKVGL--HNMPPLMLAGLRFMLVAFPAIFFVARPK----VPLNLLLGYGLTISFGQFAFLFCAI 80 (299)
T ss_pred HHHHHHHHHHhhhHHHHHHHH--hcCCHHHHHHHHHHHHHHHHHHHhcCCC----CchHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788888888888766 3589999999999998776665543222 2233444555554445 55677899
Q ss_pred hc-cchhhhhhhhhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhcccCCCCCCCCCCcchhHHHHHHHHHHHHH
Q 026238 103 QF-SSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVLVIAGTIFFA 181 (241)
Q Consensus 103 ~~-~~~~~a~~l~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a 181 (241)
++ .++++++++.++.|+++.+++++++|||+++++++|++++++|+.++..++. +.+.....|+.+++.++++||
T Consensus 81 ~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~----~~~~~~~~G~~l~l~aal~~a 156 (299)
T PRK11453 81 NFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSL----NGQHVAMLGFMLTLAAAFSWA 156 (299)
T ss_pred HhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccC----CCcchhHHHHHHHHHHHHHHH
Confidence 88 5889999999999999999999999999999999999999999998885431 112223479999999999999
Q ss_pred HHHHHHHHHhccCCh---HHHHHHHHHHHHH
Q 026238 182 TSNVGEEFFVKKKDR---VEVVCMIGVYGLL 209 (241)
Q Consensus 182 ~~~v~~~~~~~~~~~---~~~~~~~~~~~~~ 209 (241)
.|+++.||..++.++ .....++...+.+
T Consensus 157 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (299)
T PRK11453 157 CGNIFNKKIMSHSTRPAVMSLVVWSALIPII 187 (299)
T ss_pred HHHHHHHHHhcccCccchhHHHHHHHHHHHH
Confidence 999999998655433 2334444444433
No 9
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.84 E-value=1.5e-18 Score=148.65 Aligned_cols=162 Identities=18% Similarity=0.090 Sum_probs=128.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhhh--hhh---hhHH--HHHHHHH
Q 026238 17 LRTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQ--RLR---VAWY--WYLLLGF 89 (241)
Q Consensus 17 ~~~~~g~~l~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~i~l~~~~~~~~~--~~~---~~~~--~~l~~~~ 89 (241)
+++.+|.....+++++|+..+...|.. +..||..+.++|+.++.+++.+....+++ ..+ ++++ .....+.
T Consensus 4 ~~~~~g~~~~l~a~~~wg~~~~~~k~~---~~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (296)
T PRK15430 4 KQTRQGVLLALAAYFIWGIAPAYFKLI---YYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSA 80 (296)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHH
Confidence 355679999999999999999888764 24889999999999998877766543221 111 1122 2234555
Q ss_pred HHHHH-HHHHHHHhhccchhhhhhhhhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhcccCCCCCCCCCCcchh
Q 026238 90 VDVQG-NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLL 168 (241)
Q Consensus 90 ~~~~~-~~~~~~al~~~~~~~a~~l~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~ 168 (241)
++... +.+++.|++++++++++++.++.|+++++++++++|||++++++.|++++++|+.++..+++ ..
T Consensus 81 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~-------~~--- 150 (296)
T PRK15430 81 VLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFG-------SL--- 150 (296)
T ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcC-------Cc---
Confidence 65665 88999999999999999999999999999999999999999999999999999999875431 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 026238 169 GDVLVIAGTIFFATSNVGEEFFVK 192 (241)
Q Consensus 169 G~~l~l~a~~~~a~~~v~~~~~~~ 192 (241)
..++++++++||.|.+..||..+
T Consensus 151 -~~~~l~aa~~~a~~~i~~r~~~~ 173 (296)
T PRK15430 151 -PIIALGLAFSFAFYGLVRKKIAV 173 (296)
T ss_pred -cHHHHHHHHHHHHHHHHHHhcCC
Confidence 15688899999999999999743
No 10
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.82 E-value=7.3e-18 Score=144.27 Aligned_cols=193 Identities=14% Similarity=0.069 Sum_probs=146.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhhhh-hhhhHHHHHHHHHHH
Q 026238 13 SHVTLRTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQR-LRVAWYWYLLLGFVD 91 (241)
Q Consensus 13 ~~~~~~~~~g~~l~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~i~l~~~~~~~~~~-~~~~~~~~l~~~~~~ 91 (241)
++++.++..|+.+..+...+++.++...|...+ ..||..+.++|+.++++++.++..+++++ .+++++..+..|.+.
T Consensus 4 ~~~~~~~~~~~~~~~la~~~~~~~~~~~K~~~~--~~~~~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~g~~~ 81 (293)
T PRK10532 4 SLRKLPVWLPILLLLIAMASIQSGASLAKSLFP--LVGAPGVTALRLALGTLILIAIFKPWRLRFAKEQRLPLLFYGVSL 81 (293)
T ss_pred cccccccchHHHHHHHHHHHHHhhHHHHHHHHH--HcCHHHHHHHHHHHHHHHHHHHHhHHhccCCHHHHHHHHHHHHHH
Confidence 455667788999999999999999998888774 48899999999999999888776443322 345566677777765
Q ss_pred HHHHHHHHHHhhccchhhhhhhhhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhcccCCCCCCCCCCcchhHHH
Q 026238 92 VQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDV 171 (241)
Q Consensus 92 ~~~~~~~~~al~~~~~~~a~~l~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~G~~ 171 (241)
...+.+++.+++|+|++.++++.++.|+++.+++ +||+++. .++.++++|+.++..++. + .+.....|++
T Consensus 82 ~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~~~--~~~~i~~~Gv~li~~~~~-~---~~~~~~~G~l 151 (293)
T PRK10532 82 GGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPVDF--VWVVLAVLGLWFLLPLGQ-D---VSHVDLTGAA 151 (293)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChHHH--HHHHHHHHHHheeeecCC-C---cccCChHHHH
Confidence 4448888999999999999999999999998886 3666554 456778999988774432 1 1223347999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHhh
Q 026238 172 LVIAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILE 219 (241)
Q Consensus 172 l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 219 (241)
++++|+++||.|.+..||..+++++... .++.+.+.+... +....+
T Consensus 152 l~l~aa~~~a~~~v~~r~~~~~~~~~~~-~~~~~~~~~~l~-~~~~~~ 197 (293)
T PRK10532 152 LALGAGACWAIYILSGQRAGAEHGPATV-AIGSLIAALIFV-PIGALQ 197 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCchHH-HHHHHHHHHHHH-HHHHHc
Confidence 9999999999999999998777777665 455566665554 554443
No 11
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.81 E-value=4.8e-18 Score=145.93 Aligned_cols=171 Identities=14% Similarity=0.125 Sum_probs=137.8
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHH---Hhhhh-hhhhHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhh
Q 026238 38 FTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLL---YRRQR-LRVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLL 113 (241)
Q Consensus 38 ~~~~~l~~~~~~~p~~~~~~R~~~a~i~l~~~~~---~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~a~~l 113 (241)
..+|.+.+ +..+|..+++.|+..+.+...+... +++++ .+++++..+..|++......+.+.|++|++++.++++
T Consensus 19 ~~NK~~l~-~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~li 97 (302)
T TIGR00817 19 IYNKKLLN-VFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKISSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHTI 97 (302)
T ss_pred HHHHHHHh-hCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 34455443 3577999999999998776655421 11212 2456888888898875558889999999999999999
Q ss_pred hhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhcccCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhc-
Q 026238 114 DCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVLVIAGTIFFATSNVGEEFFVK- 192 (241)
Q Consensus 114 ~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~~~~~~- 192 (241)
.++.|+++++++++++|||++++++.|++++++|+.+....+ ......|++++++|+++||.|.++.||..+
T Consensus 98 ~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~-------~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~ 170 (302)
T TIGR00817 98 KAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTE-------LSFNWAGFLSAMISNITFVSRNIFSKKAMTI 170 (302)
T ss_pred HhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCc-------ccccHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999998754222 122347999999999999999999999877
Q ss_pred -cCChHHHHHHHHHHHHHHHHHHHHH
Q 026238 193 -KKDRVEVVCMIGVYGLLVSAVQLSI 217 (241)
Q Consensus 193 -~~~~~~~~~~~~~~~~~~~~i~~~~ 217 (241)
+.|+.+.+.++...+.+.+. |...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~l~-p~~~ 195 (302)
T TIGR00817 171 KSLDKTNLYAYISIMSLFLLS-PPAF 195 (302)
T ss_pred CCCCcccHHHHHHHHHHHHHH-HHHH
Confidence 78899999999999888875 6544
No 12
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.78 E-value=9.8e-17 Score=140.48 Aligned_cols=170 Identities=15% Similarity=0.150 Sum_probs=134.1
Q ss_pred HHHHHHhhcCCCC-hHHHHHHHHHHHHHHHHHHHHH--hh-hhh---hhhHHHHHHHHHHHHHHHHHHHHHhhccchhhh
Q 026238 38 FTSSLIADLGVDA-PVTQSAFAYFSLALVYGGVLLY--RR-QRL---RVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSV 110 (241)
Q Consensus 38 ~~~~~l~~~~~~~-p~~~~~~R~~~a~i~l~~~~~~--~~-~~~---~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~a 110 (241)
..+|.+. +..| |..++.+|+.++.+++..+... ++ ++. +++++.++..|+++...+...+.|+++++++.+
T Consensus 66 ~~nK~vl--~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~llp~gl~~~~~~~~~~~sl~~~svs~~ 143 (350)
T PTZ00343 66 VDNKLAL--NMLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIKSLKLFLKNFLPQGLCHLFVHFGAVISMGLGAVSFT 143 (350)
T ss_pred HHHHHHH--HhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHH
Confidence 3444444 3477 9999999999997765544321 11 112 234778889999988876667799999999999
Q ss_pred hhhhhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhcccCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 026238 111 TLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVLVIAGTIFFATSNVGEEFF 190 (241)
Q Consensus 111 ~~l~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~~~~ 190 (241)
+++.++.|+++++++++++|||++++++.+++++++|+.+....+. + ....|++++++|+++||.++++.||.
T Consensus 144 ~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~------~-~~~~G~~~~l~s~~~~a~~~i~~k~~ 216 (350)
T PTZ00343 144 HVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKEL------H-FTWLAFWCAMLSNLGSSLRSIFAKKT 216 (350)
T ss_pred HHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccc------h-hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999875331 2 23579999999999999999999998
Q ss_pred hccC-------ChHHHHHHHHHHHHHHHHHHHHH
Q 026238 191 VKKK-------DRVEVVCMIGVYGLLVSAVQLSI 217 (241)
Q Consensus 191 ~~~~-------~~~~~~~~~~~~~~~~~~i~~~~ 217 (241)
.++. ++.+...++...+.+++. |...
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-p~~~ 249 (350)
T PTZ00343 217 MKNKSEIGENLTASNIYMLLTLIASLISL-PLVL 249 (350)
T ss_pred hcccccccccCCHHHHHHHHHHHHHHHHH-HHHH
Confidence 7653 355566666778887775 6654
No 13
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.76 E-value=1.4e-16 Score=135.54 Aligned_cols=164 Identities=17% Similarity=0.117 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHh-----hhhhhhhHHHHHHHHHHHHHH-HH
Q 026238 23 LFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYR-----RQRLRVAWYWYLLLGFVDVQG-NF 96 (241)
Q Consensus 23 ~~l~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~i~l~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~-~~ 96 (241)
+.+.+.++++++.....+|...++ .++. .+.++....+++.|+..++ +++.+++++.....+.++... +.
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~--~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADK--EPDF--LWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFL 78 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCc--hhHH--HHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHH
Confidence 567788899999999998866633 2332 4677777777777776543 122233344444555544444 88
Q ss_pred HHHHHhhccchhhhhhhhhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhcccCCCCCCCCCCcchhHHHHHHHH
Q 026238 97 LVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVLVIAG 176 (241)
Q Consensus 97 ~~~~al~~~~~~~a~~l~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~G~~l~l~a 176 (241)
+++.|+++.++++++.+.++.|+++.+++++++|||++++++.|+.+++.|+.++..++. +.....|+.+++++
T Consensus 79 ~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~------~~~~~~g~~~~l~a 152 (281)
T TIGR03340 79 GLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRF------AQHRRKAYAWALAA 152 (281)
T ss_pred HHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccc------cccchhHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999998875442 11223688999999
Q ss_pred HHHHHHHHHHHHHHhccCCh
Q 026238 177 TIFFATSNVGEEFFVKKKDR 196 (241)
Q Consensus 177 ~~~~a~~~v~~~~~~~~~~~ 196 (241)
+++|+.|.+..|+..++.++
T Consensus 153 al~~a~~~i~~k~~~~~~~~ 172 (281)
T TIGR03340 153 ALGTAIYSLSDKAAALGVPA 172 (281)
T ss_pred HHHHHHhhhhccccccchhc
Confidence 99999999999886444443
No 14
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.69 E-value=1.2e-14 Score=122.92 Aligned_cols=181 Identities=24% Similarity=0.307 Sum_probs=135.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhh---hhhhhhHHHHHHHHHHHHHH
Q 026238 18 RTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRR---QRLRVAWYWYLLLGFVDVQG 94 (241)
Q Consensus 18 ~~~~g~~l~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~i~l~~~~~~~~---~~~~~~~~~~l~~~~~~~~~ 94 (241)
+...+.....+.++.+.......+...+. ..++....+.|...+.++..+...+++ .+.++++++..+.+.+....
T Consensus 4 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (292)
T COG0697 4 ALLLGLLALLLWGLLWGLSFIALKLAVES-LDPFLFAAALRFLIAALLLLPLLLLEPRGLRPALRPWLLLLLLALLGLAL 82 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCChHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHH
Confidence 33445666666666677776666666543 466677777799988887444443332 11122234566666666666
Q ss_pred -HHHHHHHhhccchhhhhhhhhchHHHHHHHHH-HHhcccchHHHHHHHHHHHHHhHhhcccCCCCCCCCCCc-chhHHH
Q 026238 95 -NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTW-LFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSR-PLLGDV 171 (241)
Q Consensus 95 -~~~~~~al~~~~~~~a~~l~~~~Pv~~~l~~~-~~l~ek~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~-~~~G~~ 171 (241)
..+++.++++++++.++.+.++.|+++.+++. +++|||++++++.+++++++|+.++..++.. +.+ ...|+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~-----~~~~~~~g~~ 157 (292)
T COG0697 83 PFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGG-----GGILSLLGLL 157 (292)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCc-----chhHHHHHHH
Confidence 88899999999999999999999999999997 6679999999999999999999999987631 111 568999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCChHHHHH-HHHH
Q 026238 172 LVIAGTIFFATSNVGEEFFVKKKDRVEVVC-MIGV 205 (241)
Q Consensus 172 l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~-~~~~ 205 (241)
+++.++++||.+.+..|+.. +.++..... ++..
T Consensus 158 ~~l~a~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~ 191 (292)
T COG0697 158 LALAAALLWALYTALVKRLS-RLGPVTLALLLQLL 191 (292)
T ss_pred HHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHH
Confidence 99999999999999999986 666655555 4444
No 15
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.64 E-value=4.7e-17 Score=132.58 Aligned_cols=197 Identities=19% Similarity=0.332 Sum_probs=152.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhhhhh---hhhHHHHHHHHHHHHHHH
Q 026238 19 TLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQRL---RVAWYWYLLLGFVDVQGN 95 (241)
Q Consensus 19 ~~~g~~l~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~i~l~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~ 95 (241)
-.+|+.+..+. ++.-.+.++++... ..+|..+.-.|++.--++..|-..+++... +.+.+++++.|+.|+.+.
T Consensus 36 p~~gl~l~~vs-~ff~~~~vv~t~~~---e~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R~~LiLRg~mG~tgv 111 (346)
T KOG4510|consen 36 PNLGLLLLTVS-YFFNSCMVVSTKVL---ENDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKRKWLILRGFMGFTGV 111 (346)
T ss_pred CccCceehhhH-HHHhhHHHhhhhhh---ccChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcEEEEEeehhhhhhHH
Confidence 34788888777 55555556666555 356888888996665555555444443322 223556788899999999
Q ss_pred HHHHHHhhccchhhhhhhhhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhcccCC--CCCCC----CC-Ccchh
Q 026238 96 FLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDA--GGDGG----GG-SRPLL 168 (241)
Q Consensus 96 ~~~~~al~~~~~~~a~~l~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li~~~~~--~~~~~----~~-~~~~~ 168 (241)
++.|+|++|.+.++|+++.+..|+++.++++.++|||.++.+.++..+.+.|++++..|.. ++.+. .+ +..++
T Consensus 112 mlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~~~~~ 191 (346)
T KOG4510|consen 112 MLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVEYDIP 191 (346)
T ss_pred HHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccccccccccccCC
Confidence 9999999999999999999999999999999999999999999999999999999987754 11111 11 23457
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHhh
Q 026238 169 GDVLVIAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILE 219 (241)
Q Consensus 169 G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 219 (241)
|...++.+++.-|.-.++.|+..++.|....+.+...++.+...|......
T Consensus 192 gt~aai~s~lf~asvyIilR~iGk~~h~~msvsyf~~i~lV~s~I~~~~ig 242 (346)
T KOG4510|consen 192 GTVAAISSVLFGASVYIILRYIGKNAHAIMSVSYFSLITLVVSLIGCASIG 242 (346)
T ss_pred chHHHHHhHhhhhhHHHHHHHhhccccEEEEehHHHHHHHHHHHHHHhhcc
Confidence 899999999999999999999988899888888888888888876665554
No 16
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.52 E-value=1.4e-12 Score=111.40 Aligned_cols=175 Identities=14% Similarity=0.075 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhh--hh-HHHHHHHHHHHHHHHHHH
Q 026238 22 LLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQRLR--VA-WYWYLLLGFVDVQGNFLV 98 (241)
Q Consensus 22 g~~l~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~i~l~~~~~~~~~~~~--~~-~~~~l~~~~~~~~~~~~~ 98 (241)
++.+..+.+++|+..+...|... ..++.+.. |..++.+++.......+++.+ .+ +..-.+.|..-..++.++
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~---g~~~~~~~--~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~l~G~~w~ig~~~~ 76 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG---GGPYSQTL--GTTFGALILSIAIAIFVLPEFWALSIFLVGLLSGAFWALGQINQ 76 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC---CCHHHHHH--HHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHhhhhhH
Confidence 56778889999999999988765 35554443 777777766554433222111 11 222233333333448999
Q ss_pred HHHhhccchhhhhhhhh-chHHHHHHHHHHHhcccchHHH----HHHHHHHHHHhHhhcccCCCCCCCCC-CcchhHHHH
Q 026238 99 NKAYQFSSITSVTLLDC-CTIAWAIVLTWLFLGTRYSLWQ----LLGAALCVLGLGLVLLSDAGGDGGGG-SRPLLGDVL 172 (241)
Q Consensus 99 ~~al~~~~~~~a~~l~~-~~Pv~~~l~~~~~l~ek~~~~~----~~g~~l~~~Gv~li~~~~~~~~~~~~-~~~~~G~~l 172 (241)
+.|.++++++.+..+.+ +.|+++++.+.+++|||.++++ ..|++++++|++++...+..+.++.+ .+..+|..+
T Consensus 77 ~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~~~~~~Gi~~ 156 (290)
T TIGR00776 77 FKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSEFNFKKGILL 156 (290)
T ss_pred HHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccccccccccchhhHHHH
Confidence 99999999999998888 8999999999999999999999 99999999999988765421111011 233589999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCChHHHHHHH
Q 026238 173 VIAGTIFFATSNVGEEFFVKKKDRVEVVCMI 203 (241)
Q Consensus 173 ~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~ 203 (241)
++.|+++|+.|.+..|+. +++|.+.++.+
T Consensus 157 ~l~sg~~y~~~~~~~~~~--~~~~~~~~~~~ 185 (290)
T TIGR00776 157 LLMSTIGYLVYVVVAKAF--GVDGLSVLLPQ 185 (290)
T ss_pred HHHHHHHHHHHHHHHHHc--CCCcceehhHH
Confidence 999999999999999986 47777774443
No 17
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.51 E-value=3.4e-12 Score=109.77 Aligned_cols=182 Identities=21% Similarity=0.255 Sum_probs=144.7
Q ss_pred HHHHHHHHhhcCCCC--hHHHHHHHHHHHHHHHHHHHHHhh--hhhhhhHHHHHHHHHHHHHHHHHHHHHhhccchhhhh
Q 026238 36 MSFTSSLIADLGVDA--PVTQSAFAYFSLALVYGGVLLYRR--QRLRVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVT 111 (241)
Q Consensus 36 ~~~~~~~l~~~~~~~--p~~~~~~R~~~a~i~l~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~a~ 111 (241)
.+.....+.+.+... |..+++..+....+...+.....+ ++.+.+++.+...+++......+-+.|++|.|.+.-.
T Consensus 15 ~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~ 94 (303)
T PF08449_consen 15 YGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPKSRKIPLKKYAILSFLFFLASVLSNAALKYISYPTQI 94 (303)
T ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccCCCcChHHHHHHHHHHHHHHHHHHHHHHHhCChHHHH
Confidence 344555555444444 899999988888877766655333 3445668888899988888899999999999999999
Q ss_pred hhhhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhcccCCCCCCCCC---CcchhHHHHHHHHHHHHHHHHHHHH
Q 026238 112 LLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGG---SRPLLGDVLVIAGTIFFATSNVGEE 188 (241)
Q Consensus 112 ~l~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~---~~~~~G~~l~l~a~~~~a~~~v~~~ 188 (241)
+..+..|+.+++++.+++|||.+++++.++++..+|+++....+..+....+ .+...|+.+.+.+.++.|...+++|
T Consensus 95 ~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~sl~~~a~~~~~qe 174 (303)
T PF08449_consen 95 VFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLLSLLLDAFTGVYQE 174 (303)
T ss_pred HHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998766541111111 1123499999999999999999999
Q ss_pred HHhcc--CChHHHHHHHHHHHHHHHHHHHHH
Q 026238 189 FFVKK--KDRVEVVCMIGVYGLLVSAVQLSI 217 (241)
Q Consensus 189 ~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~ 217 (241)
|..++ .++.+.+++..+++.+...+....
T Consensus 175 ~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~ 205 (303)
T PF08449_consen 175 KLFKKYGKSPWELMFYTNLFSLPFLLILLFL 205 (303)
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 98765 567899999999999888755444
No 18
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.50 E-value=1.1e-11 Score=103.01 Aligned_cols=184 Identities=17% Similarity=0.096 Sum_probs=140.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHH--Hhhhhh---hhhHHHHHHHHH--HHH
Q 026238 20 LYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLL--YRRQRL---RVAWYWYLLLGF--VDV 92 (241)
Q Consensus 20 ~~g~~l~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~i~l~~~~~--~~~~~~---~~~~~~~l~~~~--~~~ 92 (241)
-+|++++..+.+.|+......+.+. ..|+.++...|.+-+.+++..+.. ++++.. .++.+.+....+ ...
T Consensus 6 ~~Gil~~l~Ay~lwG~lp~y~kll~---~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li 82 (293)
T COG2962 6 RKGILLALLAYLLWGLLPLYFKLLE---PLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLI 82 (293)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHc---cCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHH
Confidence 4599999999999988888888877 578899999999988887766654 333322 222333333333 233
Q ss_pred HHHHH-HHHHhhccchhhhhhhhhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhcccCCCCCCCCCCcchhHHH
Q 026238 93 QGNFL-VNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDV 171 (241)
Q Consensus 93 ~~~~~-~~~al~~~~~~~a~~l~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~G~~ 171 (241)
..|+. |.+|.++..+-++++=++..|++..+++.+++|||+++.|++++.++.+||....... +.-+ .
T Consensus 83 ~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~-------g~lp----w 151 (293)
T COG2962 83 GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLL-------GSLP----W 151 (293)
T ss_pred HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc-------CCCc----H
Confidence 33554 7789999999999999999999999999999999999999999999999999887655 2344 4
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHhh
Q 026238 172 LVIAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILE 219 (241)
Q Consensus 172 l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 219 (241)
.++.=+++|+.|...-|+. +.|+.+..+..+..-++...+-....+
T Consensus 152 val~la~sf~~Ygl~RK~~--~v~a~~g~~lE~l~l~p~al~yl~~l~ 197 (293)
T COG2962 152 VALALALSFGLYGLLRKKL--KVDALTGLTLETLLLLPVALIYLLFLA 197 (293)
T ss_pred HHHHHHHHHHHHHHHHHhc--CCchHHhHHHHHHHHhHHHHHHHHHHh
Confidence 5666788999999887774 688888888888887777763333333
No 19
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.46 E-value=2.2e-12 Score=110.00 Aligned_cols=131 Identities=24% Similarity=0.365 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhcccCCCCCCC
Q 026238 82 YWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGG 161 (241)
Q Consensus 82 ~~~l~~~~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li~~~~~~~~~~ 161 (241)
+.-+..+.+-+.+++.+..|+++++++..+++.++.-+|+..++.++.+||.++.+.+++++.+.|++++..++..+.++
T Consensus 160 k~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~ 239 (416)
T KOG2765|consen 160 KLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSD 239 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEecccccccc
Confidence 44566677778889999999999999999999999999999999999999999999999999999999998776421112
Q ss_pred -CCCcchhHHHHHHHHHHHHHHHHHHHHHHhccC----ChHHHHHHHHHHHHHHHH
Q 026238 162 -GGSRPLLGDVLVIAGTIFFATSNVGEEFFVKKK----DRVEVVCMIGVYGLLVSA 212 (241)
Q Consensus 162 -~~~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 212 (241)
...++..|+++++++++.||+|.++.||...++ +-..+.++.+++..++..
T Consensus 240 ~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllw 295 (416)
T KOG2765|consen 240 LPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLW 295 (416)
T ss_pred CCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHh
Confidence 344668999999999999999999999986665 334455555666666664
No 20
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.46 E-value=2.4e-11 Score=98.76 Aligned_cols=178 Identities=15% Similarity=0.065 Sum_probs=134.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHH-HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccch
Q 026238 29 VSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLL-YRRQRLRVAWYWYLLLGFVDVQGNFLVNKAYQFSSI 107 (241)
Q Consensus 29 ~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~i~l~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~ 107 (241)
.........-+.|.+. +.++|..++..|..++++++..+.. ++++..++++......|..-...|.+||.+++..|-
T Consensus 20 amvsiq~Gas~Ak~LF--P~vG~~g~t~lRl~~aaLIll~l~RPwr~r~~~~~~~~~~~yGvsLg~MNl~FY~si~riPl 97 (292)
T COG5006 20 AMVSIQSGASFAKSLF--PLVGAAGVTALRLAIAALILLALFRPWRRRLSKPQRLALLAYGVSLGGMNLLFYLSIERIPL 97 (292)
T ss_pred HHHHHHhhHHHHHHHc--cccChhhHHHHHHHHHHHHHHHHhhHHHhccChhhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3333333444566666 5688999999999999999987775 333444667888888887655559999999999999
Q ss_pred hhhhhhhhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhcccCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 026238 108 TSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVLVIAGTIFFATSNVGE 187 (241)
Q Consensus 108 ~~a~~l~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~ 187 (241)
+.+..+.++.|+.+++++ .+| .+....+.+++.|+.++.-.+. + .+.....|..+++.++.||+.|.+..
T Consensus 98 GiAVAiEF~GPL~vA~~~----sRr--~~d~vwvaLAvlGi~lL~p~~~---~-~~~lDp~Gv~~Al~AG~~Wa~YIv~G 167 (292)
T COG5006 98 GIAVAIEFTGPLAVALLS----SRR--LRDFVWVALAVLGIWLLLPLGQ---S-VWSLDPVGVALALGAGACWALYIVLG 167 (292)
T ss_pred hhhhhhhhccHHHHHHHh----ccc--hhhHHHHHHHHHHHHhheeccC---C-cCcCCHHHHHHHHHHhHHHHHHHHHc
Confidence 999999999999988775 333 3455566678889888765442 1 12333489999999999999999999
Q ss_pred HHHhccCChHHHHHHHHHHHHHHHHHHHHHhh
Q 026238 188 EFFVKKKDRVEVVCMIGVYGLLVSAVQLSILE 219 (241)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 219 (241)
+|..+..|...-+...+.++.++.. |.-.-+
T Consensus 168 ~r~g~~~~g~~g~a~gm~vAaviv~-Pig~~~ 198 (292)
T COG5006 168 QRAGRAEHGTAGVAVGMLVAALIVL-PIGAAQ 198 (292)
T ss_pred chhcccCCCchHHHHHHHHHHHHHh-hhhhhh
Confidence 9997777777888888888888875 766543
No 21
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.46 E-value=1.7e-12 Score=94.87 Aligned_cols=129 Identities=22% Similarity=0.269 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhhhhh------hhhHHHHHHHHHHHHHHH
Q 026238 22 LLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQRL------RVAWYWYLLLGFVDVQGN 95 (241)
Q Consensus 22 g~~l~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~i~l~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~ 95 (241)
-++.+.+.|++++....+.|.-- ++.+|...++.|.....+++..++...++.. ++.+..+.+.|+.+....
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl--~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glsw 81 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGL--EGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSW 81 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHH
Confidence 35677888888887777766644 4678899999999999888888887655422 233555555565444448
Q ss_pred HHHHHHhhccchhhhhhhhhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhc
Q 026238 96 FLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVL 152 (241)
Q Consensus 96 ~~~~~al~~~~~~~a~~l~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li~ 152 (241)
.+||.|++..+++.++.+..++|+++.+++++++|||++..+|+|+.+..+|++++.
T Consensus 82 l~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 82 LLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 889999999999999999999999999999999999999999999999999998875
No 22
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.43 E-value=1.1e-12 Score=97.37 Aligned_cols=118 Identities=27% Similarity=0.477 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHh-hh---hh-hhhHHHHHHHHHHHHHH-HHHHHHHhhcc
Q 026238 32 TLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYR-RQ---RL-RVAWYWYLLLGFVDVQG-NFLVNKAYQFS 105 (241)
Q Consensus 32 ~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~i~l~~~~~~~-~~---~~-~~~~~~~l~~~~~~~~~-~~~~~~al~~~ 105 (241)
+|+......|...++ .||....++|+..+++ +.+..... ++ .. ++++......+.++... +.+++.+++++
T Consensus 2 ~~a~~~~~~k~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 78 (126)
T PF00892_consen 2 SWAIYSVFSKKLLKK--ISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYI 78 (126)
T ss_pred eeeeHHHHHHHHhcc--CCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhc
Confidence 466677777877743 8899999999999987 44444322 21 11 23355666777775444 89999999999
Q ss_pred chhhhhhhhhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhc
Q 026238 106 SITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVL 152 (241)
Q Consensus 106 ~~~~a~~l~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li~ 152 (241)
+++.++.+.++.|+++.+++++++||+++++++.|+.++++|+.++.
T Consensus 79 ~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 79 SASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998864
No 23
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.35 E-value=1.1e-10 Score=97.11 Aligned_cols=162 Identities=20% Similarity=0.201 Sum_probs=123.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhcccCCC
Q 026238 78 RVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAG 157 (241)
Q Consensus 78 ~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li~~~~~~ 157 (241)
+++..++.+.+++....|.+.+.++++.+++.-.++..+..++|++++.+++|+|++++||.++.+.++|+.++..++..
T Consensus 14 ~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~ 93 (244)
T PF04142_consen 14 PKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQ 93 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcc
Confidence 34466788888887777999999999999999999999999999999999999999999999999999999998655431
Q ss_pred C--C-C--C-----CCCcchhHHHHHHHHHHHHHHHHHHHHHHhccC--ChHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 026238 158 G--D-G--G-----GGSRPLLGDVLVIAGTIFFATSNVGEEFFVKKK--DRVEVVCMIGVYGLLVSAVQLSILELKSLES 225 (241)
Q Consensus 158 ~--~-~--~-----~~~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 225 (241)
+ . + + .+.+...|.++.++++++-|...++.+|..|+. +....+....+.|.++..+.....+++...+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~ 173 (244)
T PF04142_consen 94 SSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISE 173 (244)
T ss_pred ccccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 1 0 0 0 123456899999999999999999999998875 4455566667777777764433333332221
Q ss_pred ----cccchhhHHHhhhc
Q 026238 226 ----VEWSTNIVSNLLLN 239 (241)
Q Consensus 226 ----~~~~~~~~~~~l~~ 239 (241)
..|++..+..++.|
T Consensus 174 ~g~f~G~~~~~~~~i~~~ 191 (244)
T PF04142_consen 174 SGFFHGYSWWVWIVIFLQ 191 (244)
T ss_pred CCchhhcchHHHHHHHHH
Confidence 24666666655543
No 24
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.35 E-value=3.9e-11 Score=100.57 Aligned_cols=131 Identities=21% Similarity=0.229 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhhhhh---hhhHHHHHHHHHHHHHH
Q 026238 18 RTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQRL---RVAWYWYLLLGFVDVQG 94 (241)
Q Consensus 18 ~~~~g~~l~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~i~l~~~~~~~~~~~---~~~~~~~l~~~~~~~~~ 94 (241)
...+|..++.+++++++......|+..++...++.....+++..+.+++.+.....++.. ++++...+..+.++...
T Consensus 125 ~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (260)
T TIGR00950 125 INPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTAL 204 (260)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHH
Confidence 346799999999999999999999887442323444555788888888888766443222 23355566677776655
Q ss_pred -HHHHHHHhhccchhhhhhhhhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHh
Q 026238 95 -NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGL 148 (241)
Q Consensus 95 -~~~~~~al~~~~~~~a~~l~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv 148 (241)
+.+++.++++.+++.++.+.++.|+++++++++++|||++..++.|..+.+.|+
T Consensus 205 ~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 205 AYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 888999999999999999999999999999999999999999999999999986
No 25
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.33 E-value=2.1e-11 Score=89.71 Aligned_cols=99 Identities=28% Similarity=0.483 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHHHHHhhh------hhh-hhHHHHHHHHHHHHHH-HHHHHHHhhccchhhhhhhhhchHHHHHHHHHH
Q 026238 56 AFAYFSLALVYGGVLLYRRQ------RLR-VAWYWYLLLGFVDVQG-NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWL 127 (241)
Q Consensus 56 ~~R~~~a~i~l~~~~~~~~~------~~~-~~~~~~l~~~~~~~~~-~~~~~~al~~~~~~~a~~l~~~~Pv~~~l~~~~ 127 (241)
.+|+..+.+++..+...+++ ..+ +++.+....|.++... +.+++.|+++.+ +.++.+.++.|+++++++++
T Consensus 2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~ 80 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL 80 (113)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence 47898888888777654322 112 2355566667777744 888999999999 58889999999999999999
Q ss_pred HhcccchHHHHHHHHHHHHHhHhhcccC
Q 026238 128 FLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (241)
Q Consensus 128 ~l~ek~~~~~~~g~~l~~~Gv~li~~~~ 155 (241)
++|||++++++.++.++++|++++..++
T Consensus 81 ~~~er~~~~~~~a~~l~~~Gv~li~~~~ 108 (113)
T PF13536_consen 81 FFKERLSPRRWLAILLILIGVILIAWSD 108 (113)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999998776
No 26
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.25 E-value=1.7e-08 Score=86.34 Aligned_cols=212 Identities=15% Similarity=0.119 Sum_probs=149.9
Q ss_pred HHHHHHHHHHHHHHHhhcC--CCChHHHHHHHHHHHHHHHHHHHHHhh----hhh-----------hhhHHHHHHHHHHH
Q 026238 29 VSFTLALMSFTSSLIADLG--VDAPVTQSAFAYFSLALVYGGVLLYRR----QRL-----------RVAWYWYLLLGFVD 91 (241)
Q Consensus 29 ~a~~~~~~~~~~~~l~~~~--~~~p~~~~~~R~~~a~i~l~~~~~~~~----~~~-----------~~~~~~~l~~~~~~ 91 (241)
.....++.....++..+.+ ...|...++.--++-.+++...+.++. ++. +++..+..+.+++.
T Consensus 23 ~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~~vPa~iY 102 (345)
T KOG2234|consen 23 LTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKVSVPALIY 102 (345)
T ss_pred HHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHHHHHHHHH
Confidence 4444555666666665443 344666676666666666666655442 111 11234555666665
Q ss_pred HHHHHHHHHHhhccchhhhhhhhhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhcccCC---CCC-CCCCCcch
Q 026238 92 VQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDA---GGD-GGGGSRPL 167 (241)
Q Consensus 92 ~~~~~~~~~al~~~~~~~a~~l~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li~~~~~---~~~-~~~~~~~~ 167 (241)
..-|.+++.++.+.++++.++...+-.+.|+++..++++||++++||.+.++.++|+.++..+.. .+. ......+.
T Consensus 103 alqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~~~~~~~n~~ 182 (345)
T KOG2234|consen 103 ALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGAKSESSAQNPF 182 (345)
T ss_pred HHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCccCCCcccchh
Confidence 55566999999999999999999999999999999999999999999999999999999973322 111 12345677
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcc--CChHHHHHHHHHHHHHHHHHHHHHhhhcccc--c--cccchhhHHHhhhcC
Q 026238 168 LGDVLVIAGTIFFATSNVGEEFFVKK--KDRVEVVCMIGVYGLLVSAVQLSILELKSLE--S--VEWSTNIVSNLLLNN 240 (241)
Q Consensus 168 ~G~~l~l~a~~~~a~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~--~~~~~~~~~~~l~~~ 240 (241)
.|....+.+++.-+...++.+|..++ .+-...+-...++|.++..+....-+..... . ..|++..+..++.|.
T Consensus 183 ~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s~~vw~vVl~~a 261 (345)
T KOG2234|consen 183 LGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYSSIVWLVVLLNA 261 (345)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccccHHHHHHHHHHh
Confidence 89999999999999999999999865 3445556666777877776444333333321 1 368888888888774
No 27
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=99.25 E-value=9.2e-10 Score=90.91 Aligned_cols=165 Identities=25% Similarity=0.304 Sum_probs=132.7
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHhhhh------------h---hhh--HHHHHHHHHHHHHHHHHHHHHhhccchhhh
Q 026238 48 VDAPVTQSAFAYFSLALVYGGVLLYRRQR------------L---RVA--WYWYLLLGFVDVQGNFLVNKAYQFSSITSV 110 (241)
Q Consensus 48 ~~~p~~~~~~R~~~a~i~l~~~~~~~~~~------------~---~~~--~~~~l~~~~~~~~~~~~~~~al~~~~~~~a 110 (241)
.-+|+.++...|+.-..++..+...+.+. . +.+ ...++..+++...+..+++.++.+++++.-
T Consensus 36 fqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p~lfl~Pal~Di~gsslm~vgL~lTsASsf 115 (372)
T KOG3912|consen 36 FQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNPVLFLPPALCDIAGSSLMYVGLNLTSASSF 115 (372)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCcceecChHHHHHhhhHHHHHHHHHhhHHHH
Confidence 45689999777777767776665543321 0 111 234556789999999999999999999999
Q ss_pred hhhhhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhcccCC---CCCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 026238 111 TLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDA---GGDGGGGSRPLLGDVLVIAGTIFFATSNVGE 187 (241)
Q Consensus 111 ~~l~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li~~~~~---~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~ 187 (241)
.++.....+++.+++.-+++++++.+||+|+.....|++.+...|. .++.++..+...|+++.+++-+.-|++.++.
T Consensus 116 QMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~p~~d~s~iitGdllIiiaqiivaiQ~v~E 195 (372)
T KOG3912|consen 116 QMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTDPYTDYSSIITGDLLIIIAQIIVAIQMVCE 195 (372)
T ss_pred HHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccCCccccccchhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998866533 1222333567799999999999999999999
Q ss_pred HHHhcc--CChHHHHHHHHHHHHHHHH
Q 026238 188 EFFVKK--KDRVEVVCMIGVYGLLVSA 212 (241)
Q Consensus 188 ~~~~~~--~~~~~~~~~~~~~~~~~~~ 212 (241)
+|..++ ++|.+.+++.+.+|.....
T Consensus 196 ek~l~~~nV~pl~avg~eGlfG~v~~s 222 (372)
T KOG3912|consen 196 EKQLKKSNVAPLQAVGWEGLFGLVILS 222 (372)
T ss_pred HhhhhhccCCHHHHhhhhhhHHHHHHH
Confidence 998776 6799999999999965443
No 28
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.16 E-value=3.2e-09 Score=90.91 Aligned_cols=133 Identities=17% Similarity=0.018 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhhhh-h--hhhHHHHHHHHHHHHHH-H
Q 026238 20 LYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQR-L--RVAWYWYLLLGFVDVQG-N 95 (241)
Q Consensus 20 ~~g~~l~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~i~l~~~~~~~~~~-~--~~~~~~~l~~~~~~~~~-~ 95 (241)
..|..++..++++++.....++...+ ..+|...... ..++++.+.++....... . ...+...+..++++... +
T Consensus 147 ~~G~ll~l~aa~~~a~~~v~~r~~~~--~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lgv~~t~~~~ 223 (293)
T PRK10532 147 LTGAALALGAGACWAIYILSGQRAGA--EHGPATVAIG-SLIAALIFVPIGALQAGEALWHWSILPLGLAVAILSTALPY 223 (293)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhc--cCCchHHHHH-HHHHHHHHHHHHHHccCcccCCHHHHHHHHHHHHHHHHHHH
Confidence 45999999999999999999888763 3455555544 355556666655443221 1 11233345677777666 7
Q ss_pred HHHHHHhhccchhhhhhhhhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhcccC
Q 026238 96 FLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (241)
Q Consensus 96 ~~~~~al~~~~~~~a~~l~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li~~~~ 155 (241)
.+++.++++.+++.++.+.+++|+++.++++++++|+++..+++|..+.+.|++......
T Consensus 224 ~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~ 283 (293)
T PRK10532 224 SLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTI 283 (293)
T ss_pred HHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 789999999999999999999999999999999999999999999999999999886554
No 29
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.09 E-value=4.8e-09 Score=89.78 Aligned_cols=133 Identities=16% Similarity=-0.018 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhhhh-----hhhhHHHHHHHHHHHHHH
Q 026238 20 LYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQR-----LRVAWYWYLLLGFVDVQG 94 (241)
Q Consensus 20 ~~g~~l~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~i~l~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~ 94 (241)
..|..++.+++++++......+...+. ++.....+.+..+++++.++....... ..+.+......++++...
T Consensus 149 ~~G~l~~l~a~~~~a~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~ 225 (292)
T PRK11272 149 PWGAILILIASASWAFGSVWSSRLPLP---VGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSII 225 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHH
Confidence 468899999999999998888776532 234455677778877777665433211 123355667777776666
Q ss_pred -HHHHHHHhhccchhhhhhhhhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhcccC
Q 026238 95 -NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (241)
Q Consensus 95 -~~~~~~al~~~~~~~a~~l~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li~~~~ 155 (241)
+.+++.++++.++++++.+.++.|+++++++++++||+++..+++|.++.+.|+.+....+
T Consensus 226 ~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~ 287 (292)
T PRK11272 226 AISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGK 287 (292)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999999999999999999886543
No 30
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.99 E-value=2.3e-08 Score=87.82 Aligned_cols=137 Identities=15% Similarity=0.100 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHH-hhhhh-------hhhHHHHHHHHH
Q 026238 18 RTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLY-RRQRL-------RVAWYWYLLLGF 89 (241)
Q Consensus 18 ~~~~g~~l~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~i~l~~~~~~-~~~~~-------~~~~~~~l~~~~ 89 (241)
+...|..+....+++|+......+...+. ..++...+++....+.+.+.+.... .+... .......+..++
T Consensus 186 ~~~lG~~l~l~aa~~wa~~~il~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~i 264 (358)
T PLN00411 186 DWLIGGALLTIQGIFVSVSFILQAHIMSE-YPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMAI 264 (358)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHHHHHHHHH
Confidence 34568899999999999998888876532 3344455555555555444333322 21111 011122333343
Q ss_pred HHHHHHHHHHHHhhccchhhhhhhhhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhcccC
Q 026238 90 VDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (241)
Q Consensus 90 ~~~~~~~~~~~al~~~~~~~a~~l~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li~~~~ 155 (241)
....++.+.+.++++.+++.+++..++.|++++++++++++|++++.+++|.++.+.|+.+...++
T Consensus 265 ~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~ 330 (358)
T PLN00411 265 ITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGK 330 (358)
T ss_pred HHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhh
Confidence 332237778889999999999999999999999999999999999999999999999999987543
No 31
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.94 E-value=3.2e-08 Score=84.81 Aligned_cols=131 Identities=19% Similarity=0.042 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhhhh---h-hhhHHHHHHHHHHHHHHH
Q 026238 20 LYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQR---L-RVAWYWYLLLGFVDVQGN 95 (241)
Q Consensus 20 ~~g~~l~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~i~l~~~~~~~~~~---~-~~~~~~~l~~~~~~~~~~ 95 (241)
..|..++..++++++......|...++ .+|.... +..+.+.+.+........ . .+.+...+..++....++
T Consensus 155 ~~G~~~~l~aa~~~A~~~v~~k~~~~~--~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~ 229 (295)
T PRK11689 155 PLSYGLAFIGAFIWAAYCNVTRKYARG--KNGITLF---FILTALALWIKYFLSPQPAMVFSLPAIIKLLLAAAAMGFGY 229 (295)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCC--CCchhHH---HHHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHHH
Confidence 358889999999999999999887632 3444432 222233333322222111 1 122444455554433338
Q ss_pred HHHHHHhhccchhhhhhhhhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhcccC
Q 026238 96 FLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (241)
Q Consensus 96 ~~~~~al~~~~~~~a~~l~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li~~~~ 155 (241)
.+++.++++.+++.++.+.+..|++..++++++++|+++..+++|.++.+.|+.+....+
T Consensus 230 ~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~ 289 (295)
T PRK11689 230 AAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLAT 289 (295)
T ss_pred HHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhH
Confidence 899999999999999999999999999999999999999999999999999998876544
No 32
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.93 E-value=9e-08 Score=82.17 Aligned_cols=136 Identities=15% Similarity=0.084 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHHHHH-Hhhh--------hh-hhhHHHHHHHH
Q 026238 20 LYLLFLGQLVSFTLALMSFTSSLIADLG-VDAPVTQSAFAYFSLALVYGGVLL-YRRQ--------RL-RVAWYWYLLLG 88 (241)
Q Consensus 20 ~~g~~l~~~~a~~~~~~~~~~~~l~~~~-~~~p~~~~~~R~~~a~i~l~~~~~-~~~~--------~~-~~~~~~~l~~~ 88 (241)
..|..++..++++++.....++...++. ..+......+-...+.+.+..... .... .. ...+...+..+
T Consensus 142 ~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 221 (299)
T PRK11453 142 MLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLA 221 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHH
Confidence 4699999999999999999999876432 222233333333443332222211 1111 11 12356667777
Q ss_pred HHHHHH-HHHHHHHhhccchhhhhhhhhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhcccC
Q 026238 89 FVDVQG-NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (241)
Q Consensus 89 ~~~~~~-~~~~~~al~~~~~~~a~~l~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li~~~~ 155 (241)
+++... +.+++.++++.++++++.+.++.|++..++++++++|+++..+++|..+.++|+.+...+.
T Consensus 222 i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~ 289 (299)
T PRK11453 222 FVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGL 289 (299)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcch
Confidence 777766 8889999999999999999999999999999999999999999999999999998876544
No 33
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.89 E-value=3.5e-08 Score=83.93 Aligned_cols=130 Identities=19% Similarity=0.187 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc-C-CCChHHHHHHHHHHHHHHHHHHHHH-hhhhh---hhhHHHHHHHHHHHHHH
Q 026238 21 YLLFLGQLVSFTLALMSFTSSLIADL-G-VDAPVTQSAFAYFSLALVYGGVLLY-RRQRL---RVAWYWYLLLGFVDVQG 94 (241)
Q Consensus 21 ~g~~l~~~~a~~~~~~~~~~~~l~~~-~-~~~p~~~~~~R~~~a~i~l~~~~~~-~~~~~---~~~~~~~l~~~~~~~~~ 94 (241)
.|..++.+++++++......|...++ + ..+........+...++.+...... +++.. ..+.......+.+....
T Consensus 144 ~g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l 223 (281)
T TIGR03340 144 KAYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRSMFPYARQILPSATLGGLMIGG 223 (281)
T ss_pred hHHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHH
Confidence 57777888888888777766654321 1 1111222222333321222222221 22111 12233334444444444
Q ss_pred -HHHHHHHhhccchhhhhhhhhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHh
Q 026238 95 -NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGL 150 (241)
Q Consensus 95 -~~~~~~al~~~~~~~a~~l~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~l 150 (241)
+.+++.++++.+++.++.+.++.|++..+++++++||++++.+++|..+.++|+.+
T Consensus 224 ~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 224 AYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 88999999999999999999999999999999999999999999999999999876
No 34
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.85 E-value=7.4e-08 Score=82.75 Aligned_cols=136 Identities=13% Similarity=0.076 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhhh-hh-hhh------------HHH-H
Q 026238 20 LYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQ-RL-RVA------------WYW-Y 84 (241)
Q Consensus 20 ~~g~~l~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~i~l~~~~~~~~~-~~-~~~------------~~~-~ 84 (241)
..|..++.+++++++.....++...+++..+|..+..+....+++.+.|+...... .. ..+ ... .
T Consensus 144 ~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (302)
T TIGR00817 144 WAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVS 223 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHH
Confidence 45888899899999988888887764335678888888888888888887653221 11 100 011 1
Q ss_pred HHHHHHHHHH-HHHHHHHhhccchhhhhhhhhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhcccC
Q 026238 85 LLLGFVDVQG-NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (241)
Q Consensus 85 l~~~~~~~~~-~~~~~~al~~~~~~~a~~l~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li~~~~ 155 (241)
...+...... +.+.+.+++++++..+++..+..|++++++++++++|+++..+++|.+++++|+.+....+
T Consensus 224 ~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k 295 (302)
T TIGR00817 224 LVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVK 295 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHh
Confidence 1112212222 4566689999999999999999999999999999999999999999999999999887544
No 35
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.78 E-value=1.6e-07 Score=80.50 Aligned_cols=70 Identities=11% Similarity=0.153 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHhhccchhhhhhhhhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhcccC
Q 026238 86 LLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (241)
Q Consensus 86 ~~~~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li~~~~ 155 (241)
..+......+.+++.++++.+++.++.+.+..|++..++++++++|+++..++.|..+.++|+.++..++
T Consensus 218 ~~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~~ 287 (296)
T PRK15430 218 AAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDA 287 (296)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444449999999999999999999999999999999999999999999999999999988876543
No 36
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=98.78 E-value=4.3e-08 Score=84.00 Aligned_cols=173 Identities=17% Similarity=0.227 Sum_probs=136.2
Q ss_pred HHHhhc-CCCChHHHHHHHHHHHHHHHHHHHHHhh---hh--hhhhHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhh
Q 026238 41 SLIADL-GVDAPVTQSAFAYFSLALVYGGVLLYRR---QR--LRVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLD 114 (241)
Q Consensus 41 ~~l~~~-~~~~p~~~~~~R~~~a~i~l~~~~~~~~---~~--~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~a~~l~ 114 (241)
|.+.+. +..-|..++..++..+.+.....-..+- ++ .+..++..+-.|++...+..+-+.|+++.+++...++-
T Consensus 37 K~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~iK 116 (316)
T KOG1441|consen 37 KYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVFCISHVLGNVSLSYVPVSFYQTIK 116 (316)
T ss_pred HhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHHhcchhhhccchhHHHHHH
Confidence 444432 4555888888877776665544433221 11 12347778888888877799999999999999999999
Q ss_pred hchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhcccCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhc--
Q 026238 115 CCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVLVIAGTIFFATSNVGEEFFVK-- 192 (241)
Q Consensus 115 ~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~~~~~~-- 192 (241)
.+.|+++.++++++.+|+.+...+..++....|+.+....+ ..-.+.|...++++.+..+..+++.|+..+
T Consensus 117 a~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e-------~~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~ 189 (316)
T KOG1441|consen 117 ALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTE-------LSFNLFGFISAMISNLAFALRNILSKKLLTSK 189 (316)
T ss_pred hhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeecc-------ccccHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999999999999999999999999999998877644 233468999999999999999999999873
Q ss_pred c--CChHHHHHHHHHHHHHHHHHHHHHhhh
Q 026238 193 K--KDRVEVVCMIGVYGLLVSAVQLSILEL 220 (241)
Q Consensus 193 ~--~~~~~~~~~~~~~~~~~~~i~~~~~~~ 220 (241)
+ .|+.+...++.-++...+.+|....++
T Consensus 190 ~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~ 219 (316)
T KOG1441|consen 190 GESLNSMNLLYYTAPISLIFLLIPFLDYVE 219 (316)
T ss_pred ccccCchHHHHHhhhHHHHHHhcchHhhhc
Confidence 2 678888888888888888657765543
No 37
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.78 E-value=6.1e-07 Score=69.07 Aligned_cols=130 Identities=15% Similarity=0.140 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc-----CCCChHHHHHHHHHHHHHHHHHHHHHh-hhh-------h-h-------hh
Q 026238 22 LLFLGQLVSFTLALMSFTSSLIADL-----GVDAPVTQSAFAYFSLALVYGGVLLYR-RQR-------L-R-------VA 80 (241)
Q Consensus 22 g~~l~~~~a~~~~~~~~~~~~l~~~-----~~~~p~~~~~~R~~~a~i~l~~~~~~~-~~~-------~-~-------~~ 80 (241)
|.+++....++.+...+..+.+.+. ...+|..+.......+.+++.|..... +.. . + +.
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 5677888888888888888877655 577889999888888888888876532 211 0 1 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhh
Q 026238 81 WYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLV 151 (241)
Q Consensus 81 ~~~~l~~~~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li 151 (241)
...++..|++++..+...+..++++++-..++......+.+.++++++++|+++..++.|+.++++|+.+-
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Y 151 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLY 151 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhee
Confidence 34455556666666999999999999999999999999999999999999999999999999999998753
No 38
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.74 E-value=2.9e-07 Score=78.77 Aligned_cols=130 Identities=12% Similarity=0.076 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHH---HH-HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 026238 19 TLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFA---YF-SLALVYGGVLLYRRQRLRVAWYWYLLLGFVDVQG 94 (241)
Q Consensus 19 ~~~g~~l~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R---~~-~a~i~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 94 (241)
..+|+..+++++++++......+... .+|....+.. .. .+.++..+. .+.++...+..+..++.|++-..+
T Consensus 150 ~~~Gi~~~l~sg~~y~~~~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Gi~~~ia 224 (290)
T TIGR00776 150 FKKGILLLLMSTIGYLVYVVVAKAFG----VDGLSVLLPQAIGMVIGGIIFNLGH-ILAKPLKKYAILLNILPGLMWGIG 224 (290)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHcC----CCcceehhHHHHHHHHHHHHHHHHH-hcccchHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999888888652 4556553333 33 333333322 111111122233344577775444
Q ss_pred HHHHHHHhh-ccchhhhhhhhhchHHHHHHHHHHHhcccchHHHH----HHHHHHHHHhHhhcc
Q 026238 95 NFLVNKAYQ-FSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQL----LGAALCVLGLGLVLL 153 (241)
Q Consensus 95 ~~~~~~al~-~~~~~~a~~l~~~~Pv~~~l~~~~~l~ek~~~~~~----~g~~l~~~Gv~li~~ 153 (241)
+.+++.+.+ +.+++.+.++.+..|+...+.+.+++||+.+++++ +|.++.+.|+.++..
T Consensus 225 ~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 225 NFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred HHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence 888989999 99999999999999999999999999999999999 999999999988753
No 39
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=98.69 E-value=2.7e-07 Score=72.88 Aligned_cols=122 Identities=18% Similarity=0.317 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHhhccchhhhhhhhhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhcccCCCCCCCCCCcchhHH
Q 026238 91 DVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGD 170 (241)
Q Consensus 91 ~~~~~~~~~~al~~~~~~~a~~l~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~G~ 170 (241)
....++.|..|++..++++++.+....-.++.+++++.+|+|....++++..+++.|++++...|. ...+.+.|.
T Consensus 63 Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN-----~~a~e~iGi 137 (290)
T KOG4314|consen 63 WTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADN-----EHADEIIGI 137 (290)
T ss_pred EecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccc-----hhhhhhhhH
Confidence 344499999999999999999999999999999999999999999999999999999999987763 245667999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCC---hHHHHHHHHHHHHHHHHHHHHH
Q 026238 171 VLVIAGTIFFATSNVGEEFFVKKKD---RVEVVCMIGVYGLLVSAVQLSI 217 (241)
Q Consensus 171 ~l~l~a~~~~a~~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~ 217 (241)
.+++.|+..-|+|-+..|+...+.+ ...++.-.++.-..+...|..+
T Consensus 138 ~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~~~lI 187 (290)
T KOG4314|consen 138 ACAVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLCFISFPALI 187 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhhhHHH
Confidence 9999999999999999999876533 4445554455555444444443
No 40
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.68 E-value=1.5e-06 Score=73.32 Aligned_cols=133 Identities=29% Similarity=0.283 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHH-HHHHHHHHHHHHHHHHhhh--hhhhhHHHHHHHHHHHHHH-
Q 026238 19 TLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSA-FAYFSLALVYGGVLLYRRQ--RLRVAWYWYLLLGFVDVQG- 94 (241)
Q Consensus 19 ~~~g~~l~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~-~R~~~a~i~l~~~~~~~~~--~~~~~~~~~l~~~~~~~~~- 94 (241)
...|...+..++++++......+... ..++..... ..+........+....... .....+......++++...
T Consensus 152 ~~~g~~~~l~a~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~ 228 (292)
T COG0697 152 SLLGLLLALAAALLWALYTALVKRLS---RLGPVTLALLLQLLLALLLLLLFFLSGFGAPILSRAWLLLLYLGVFSTGLA 228 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc---CCChHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHH
Confidence 46799999999999998888887666 234444444 3333222222222222221 2234466677777777754
Q ss_pred HHHHHHHhhccchhhhhhhhhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhccc
Q 026238 95 NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLS 154 (241)
Q Consensus 95 ~~~~~~al~~~~~~~a~~l~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li~~~ 154 (241)
+.+++.++++.+++.++.+.++.|++.+++++++++|+++.+++.|.++.+.|+.+....
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 229 YLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 899999999999999999999999999999999999999999999999999999887654
No 41
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.67 E-value=2e-07 Score=68.22 Aligned_cols=66 Identities=11% Similarity=0.015 Sum_probs=59.3
Q ss_pred HHHHHHH-HHHHHHHhhccchhhhhhhhhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhcc
Q 026238 88 GFVDVQG-NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLL 153 (241)
Q Consensus 88 ~~~~~~~-~~~~~~al~~~~~~~a~~l~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li~~ 153 (241)
+++++.. ..+...++++.|.+.+..+.++.|+++.+.+++++|||+++++++|+.++++|++++..
T Consensus 43 ~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~ 109 (111)
T PRK15051 43 ALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS 109 (111)
T ss_pred HHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3355555 88888999999999999999999999999999999999999999999999999988753
No 42
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.63 E-value=2.4e-06 Score=75.02 Aligned_cols=133 Identities=13% Similarity=0.045 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcC-----CCChHHHHHHHHHHHHHHHHHHHH-Hhhh---hhh--------h-hH
Q 026238 20 LYLLFLGQLVSFTLALMSFTSSLIADLG-----VDAPVTQSAFAYFSLALVYGGVLL-YRRQ---RLR--------V-AW 81 (241)
Q Consensus 20 ~~g~~l~~~~a~~~~~~~~~~~~l~~~~-----~~~p~~~~~~R~~~a~i~l~~~~~-~~~~---~~~--------~-~~ 81 (241)
+.|.+.+.+.+++++..+..+|.+.++. ..++..+...-...++++++|+.. .... ... . .+
T Consensus 193 ~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~ 272 (350)
T PTZ00343 193 WLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTK 272 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccch
Confidence 5699999999999999999998876432 245555555556788888888765 2211 100 0 01
Q ss_pred HHHHHHHHHH---HHH-HHHHHHHhhccchhhhhhhhhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhc
Q 026238 82 YWYLLLGFVD---VQG-NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVL 152 (241)
Q Consensus 82 ~~~l~~~~~~---~~~-~~~~~~al~~~~~~~a~~l~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li~ 152 (241)
...+...+.. ... +.+.+.+++++++.++++..+..|+++.++++++++|+++..+++|..++++|+.+..
T Consensus 273 ~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs 347 (350)
T PTZ00343 273 GIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYS 347 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHh
Confidence 1111111111 112 4445569999999999999999999999999999999999999999999999998764
No 43
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=98.61 E-value=7.4e-06 Score=68.66 Aligned_cols=160 Identities=17% Similarity=0.161 Sum_probs=113.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhhhhh---hhHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhh-hchHHHHHHHH
Q 026238 50 APVTQSAFAYFSLALVYGGVLLYRRQRLR---VAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLD-CCTIAWAIVLT 125 (241)
Q Consensus 50 ~p~~~~~~R~~~a~i~l~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~a~~l~-~~~Pv~~~l~~ 125 (241)
+|..+.+.-..-+.++.+.....+++... ..+..-++.|.+-..++...+.|+++.+++.+..+. ..+-+.+.+.+
T Consensus 11 ~~~~Q~lG~t~Gali~alv~~~~~~p~~~~~~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~g 90 (269)
T PF06800_consen 11 KPANQILGTTIGALIFALVVFLFRQPAFSMSGTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIG 90 (269)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHH
Confidence 46666644444444444444444444443 346666777777777799999999999999999775 66677799999
Q ss_pred HHHhcccchHHHHH----HHHHHHHHhHhhcccCCCCCC-CCCCcchhHHHHHHHHHHHHHHHHHHHHHHhccCChHHHH
Q 026238 126 WLFLGTRYSLWQLL----GAALCVLGLGLVLLSDAGGDG-GGGSRPLLGDVLVIAGTIFFATSNVGEEFFVKKKDRVEVV 200 (241)
Q Consensus 126 ~~~l~ek~~~~~~~----g~~l~~~Gv~li~~~~~~~~~-~~~~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~ 200 (241)
.++++|-.+..+++ ++++.++|+++....|..+.. +.+.+..+|....+++.+.|-.|.+..|.. +.++....
T Consensus 91 v~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~~--~~~~~~~~ 168 (269)
T PF06800_consen 91 VLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSDKSSSKSNMKKGILALLISTIGYWIYSVIPKAF--HVSGWSAF 168 (269)
T ss_pred HhhcCCCCCcchHHHHHHHHHHHHHHHHHhccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHhc--CCChhHhH
Confidence 99999988876644 888899999998877642221 123445689999999999999999998873 56666665
Q ss_pred HHHHHHHHHHHH
Q 026238 201 CMIGVYGLLVSA 212 (241)
Q Consensus 201 ~~~~~~~~~~~~ 212 (241)
.-+ .+|.++..
T Consensus 169 lPq-aiGm~i~a 179 (269)
T PF06800_consen 169 LPQ-AIGMLIGA 179 (269)
T ss_pred HHH-HHHHHHHH
Confidence 544 34444444
No 44
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=1.4e-05 Score=67.77 Aligned_cols=190 Identities=16% Similarity=0.070 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCC-hHHHHHHHHHHHHHHHHHHHHHhh----hhh-hhhHHHHHHHHHHHHHHH
Q 026238 22 LLFLGQLVSFTLALMSFTSSLIADLGVDA-PVTQSAFAYFSLALVYGGVLLYRR----QRL-RVAWYWYLLLGFVDVQGN 95 (241)
Q Consensus 22 g~~l~~~~a~~~~~~~~~~~~l~~~~~~~-p~~~~~~R~~~a~i~l~~~~~~~~----~~~-~~~~~~~l~~~~~~~~~~ 95 (241)
++.-+..=++....+.+..|..-.....| -.......+....+.+. ++.+-+ +++ ++..++++-..++.+...
T Consensus 13 ~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~-~lk~~~lv~~~~l~~~~~kk~~P~~~lf~~~i 91 (314)
T KOG1444|consen 13 PLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVL-VLKRLGLVNFRPLDLRTAKKWFPVSLLFVGML 91 (314)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH-HHHHhceeecCCcChHHHHHHccHHHHHHHHH
Confidence 34444433334444455666554333333 33333355555444332 222211 222 344566666666555545
Q ss_pred HHHHHHhhccchhhhhhhhhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhcccCCCCCCCCCCcchhHHHHHHH
Q 026238 96 FLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVLVIA 175 (241)
Q Consensus 96 ~~~~~al~~~~~~~a~~l~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~G~~l~l~ 175 (241)
+.-..+++|.++...+++....|+.+++....++|.|+++..+.++....+|......++. ..+ ..|+.+++.
T Consensus 92 ~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~------sf~-~~gY~w~~~ 164 (314)
T KOG1444|consen 92 FTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDL------SFN-LRGYSWALA 164 (314)
T ss_pred HHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccc------eec-chhHHHHHH
Confidence 5566799999999999999999999999999999999999999999999999887776552 222 359999999
Q ss_pred HHHHHHHHHHHHHHHhcc--CChHHHHHHHHHHHHHHHHHHHHHhh
Q 026238 176 GTIFFATSNVGEEFFVKK--KDRVEVVCMIGVYGLLVSAVQLSILE 219 (241)
Q Consensus 176 a~~~~a~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~ 219 (241)
..+.-+.+.++.||..+. .+....+++-.+...+...+...+.+
T Consensus 165 n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~g 210 (314)
T KOG1444|consen 165 NCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITG 210 (314)
T ss_pred HHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhc
Confidence 999999999999998654 34567788888888777764444443
No 45
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=98.44 E-value=6.7e-06 Score=67.42 Aligned_cols=129 Identities=15% Similarity=-0.023 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhhhhh--hhh-HHHHHHHHHHHHHH-HH
Q 026238 21 YLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQRL--RVA-WYWYLLLGFVDVQG-NF 96 (241)
Q Consensus 21 ~g~~l~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~i~l~~~~~~~~~~~--~~~-~~~~l~~~~~~~~~-~~ 96 (241)
.|..++...+.||++..+..+...+. ... ..-...-+..++++.+|+-..+..+- ..+ ...-+..++++... +.
T Consensus 148 ~Gv~~Al~AG~~Wa~YIv~G~r~g~~-~~g-~~g~a~gm~vAaviv~Pig~~~ag~~l~~p~ll~laLgvavlSSalPYs 225 (292)
T COG5006 148 VGVALALGAGACWALYIVLGQRAGRA-EHG-TAGVAVGMLVAALIVLPIGAAQAGPALFSPSLLPLALGVAVLSSALPYS 225 (292)
T ss_pred HHHHHHHHHhHHHHHHHHHcchhccc-CCC-chHHHHHHHHHHHHHhhhhhhhcchhhcChHHHHHHHHHHHHhcccchH
Confidence 78999999999999998888887742 223 33344778999999999877554322 122 23344556677777 88
Q ss_pred HHHHHhhccchhhhhhhhhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhh
Q 026238 97 LVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLV 151 (241)
Q Consensus 97 ~~~~al~~~~~~~a~~l~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li 151 (241)
+...++++.|....++++++.|.+.++.++++++|+++..||+++...+++..=.
T Consensus 226 LEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~ 280 (292)
T COG5006 226 LEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGS 280 (292)
T ss_pred HHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999888876643
No 46
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=98.31 E-value=0.00023 Score=60.05 Aligned_cols=165 Identities=18% Similarity=0.272 Sum_probs=131.0
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHh--hhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhhchHHHHHHHH
Q 026238 48 VDAPVTQSAFAYFSLALVYGGVLLYR--RQRLRVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLT 125 (241)
Q Consensus 48 ~~~p~~~~~~R~~~a~i~l~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pv~~~l~~ 125 (241)
.-+|..+++..-+.+.+.-...+... +...+.+++.+...++.......+.+.|++|.+-.+-.+--+.--+-+++++
T Consensus 48 F~~~~fL~~~q~l~~~~~s~~~l~~~k~~~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg 127 (327)
T KOG1581|consen 48 FEHSLFLVFCQRLVALLVSYAMLKWWKKELSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMG 127 (327)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHH
Confidence 45677777777777666554333322 2233556888999999888889999999999999999888888889999999
Q ss_pred HHHhcccchHHHHHHHHHHHHHhHhhcccCCCC-CCC-CCCcchhHHHHHHHHHHHHHHHHHHHHHHhcc--CChHHHHH
Q 026238 126 WLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGG-DGG-GGSRPLLGDVLVIAGTIFFATSNVGEEFFVKK--KDRVEVVC 201 (241)
Q Consensus 126 ~~~l~ek~~~~~~~g~~l~~~Gv~li~~~~~~~-~~~-~~~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~--~~~~~~~~ 201 (241)
.+..|+|.+.++.+..++.-.|+.+-...+..+ ... ..++...|..+....-+.-+.-+..+++..++ .++..+++
T Consensus 128 ~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~ 207 (327)
T KOG1581|consen 128 TLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMF 207 (327)
T ss_pred HHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHH
Confidence 999999999999999999999988776543212 111 22456689999999999999999999998776 57899999
Q ss_pred HHHHHHHHHHH
Q 026238 202 MIGVYGLLVSA 212 (241)
Q Consensus 202 ~~~~~~~~~~~ 212 (241)
+.++++.+...
T Consensus 208 ~vNLf~~i~~~ 218 (327)
T KOG1581|consen 208 GVNLFSAILNG 218 (327)
T ss_pred HHHHHHHHHHH
Confidence 99999998886
No 47
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.28 E-value=5.7e-06 Score=62.09 Aligned_cols=72 Identities=24% Similarity=0.285 Sum_probs=63.1
Q ss_pred HHHHHHHHHHH-HHHHHHHhhccchhhhhhhhhchHHHHHHHHHH--HhcccchHHHHHHHHHHHHHhHhhcccC
Q 026238 84 YLLLGFVDVQG-NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWL--FLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (241)
Q Consensus 84 ~l~~~~~~~~~-~~~~~~al~~~~~~~a~~l~~~~Pv~~~l~~~~--~l~ek~~~~~~~g~~l~~~Gv~li~~~~ 155 (241)
+++.|+..... ..+...++++.|++.+..+.+..++.+.+.++. ++||+++.++++|+++.++|++++..++
T Consensus 50 ~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~ 124 (129)
T PRK02971 50 AVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence 45667766766 888999999999999999999999888888885 8999999999999999999999987544
No 48
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=98.21 E-value=8.6e-05 Score=62.61 Aligned_cols=166 Identities=12% Similarity=0.127 Sum_probs=112.7
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHH-Hhhhhhh-h---hH----HHHHHHHHHHHHH-HHHHHHHhhccchhhhhhhhhch
Q 026238 48 VDAPVTQSAFAYFSLALVYGGVLL-YRRQRLR-V---AW----YWYLLLGFVDVQG-NFLVNKAYQFSSITSVTLLDCCT 117 (241)
Q Consensus 48 ~~~p~~~~~~R~~~a~i~l~~~~~-~~~~~~~-~---~~----~~~l~~~~~~~~~-~~~~~~al~~~~~~~a~~l~~~~ 117 (241)
..=|..++...++.-..+...... ++++..+ + .| ++....+++ ... -.+-+++++|++.+.-++.-+..
T Consensus 42 f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtala-ta~DIGLSN~sl~yVtlSlYTM~KSSs 120 (349)
T KOG1443|consen 42 FHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALA-TALDIGLSNWSLEYVTLSLYTMTKSSS 120 (349)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhh-hhcccccccceeeeeeeeeeeeccccH
Confidence 333788777777665554443332 2222111 1 13 333233332 333 55678899999999999999999
Q ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhcccCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhcc----
Q 026238 118 IAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVLVIAGTIFFATSNVGEEFFVKK---- 193 (241)
Q Consensus 118 Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~---- 193 (241)
++++.+++.+|.-||+++.-..-+.++.+|+.+.+..+. +-...|..+.++|.++-++--.+.++..++
T Consensus 121 i~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsT-------qf~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~ 193 (349)
T KOG1443|consen 121 ILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKST-------QFNIEGFFLVLAASLLSGLRWAFTQMLLRNQPSA 193 (349)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEeccc-------ceeehhHHHHHHHHHhhhhhHHHHHHHHhcCccc
Confidence 999999999999999999999999999999999887662 233579999888888877777777766554
Q ss_pred -CChHHHHHHHHHHHHHHHHHHHHHhhhc
Q 026238 194 -KDRVEVVCMIGVYGLLVSAVQLSILELK 221 (241)
Q Consensus 194 -~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 221 (241)
.||...+....-...+.+......+|+.
T Consensus 194 ~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~ 222 (349)
T KOG1443|consen 194 KRNPIDTIFHLQPWMSIGLLPLSLLFEGL 222 (349)
T ss_pred cCCCeeeHHHhhhHHHHHHHHHHHHHccc
Confidence 4566666655544444443234456654
No 49
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=98.07 E-value=0.00024 Score=61.09 Aligned_cols=134 Identities=15% Similarity=0.108 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHH--hhhhh---------hhhHHHHHHHHHH
Q 026238 22 LLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLY--RRQRL---------RVAWYWYLLLGFV 90 (241)
Q Consensus 22 g~~l~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~i~l~~~~~~--~~~~~---------~~~~~~~l~~~~~ 90 (241)
|+++..+..++-+..+...+.+.++...++....++-..++.++..+.... ..... +......+..+++
T Consensus 155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~ 234 (303)
T PF08449_consen 155 GIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLT 234 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999888888888888888876667788899888888888877766654 22110 1124566777778
Q ss_pred HHHHHHHHHHHhhccchhhhhhhhhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhcccC
Q 026238 91 DVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (241)
Q Consensus 91 ~~~~~~~~~~al~~~~~~~a~~l~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li~~~~ 155 (241)
+..++.+.+.-.+..++-..+++..+.-+.+.+++.+++++++++.+|.|+.+.+.|..+-...+
T Consensus 235 ~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~ 299 (303)
T PF08449_consen 235 GALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAK 299 (303)
T ss_pred HHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhh
Confidence 88887777778899999999999999999999999999999999999999999999998876544
No 50
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=98.07 E-value=5.4e-05 Score=65.03 Aligned_cols=122 Identities=19% Similarity=0.180 Sum_probs=86.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH-
Q 026238 16 TLRTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQRLRVAWYWYLLLGFVDVQG- 94 (241)
Q Consensus 16 ~~~~~~g~~l~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~i~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 94 (241)
++++..|+.++++.+++.+......|+-..+..... .|-- ...++..+++.| +.|+.....
T Consensus 2 ~~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~-----~~~~----------~~~~~~l~~~~W---~~G~~~~~~g 63 (300)
T PF05653_consen 2 NTDFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGS-----LRAG----------SGGRSYLRRPLW---WIGLLLMVLG 63 (300)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-----cccc----------chhhHHHhhHHH---HHHHHHHhcc
Confidence 457788999999999998888777766542211100 0000 000111222222 344443334
Q ss_pred HHHHHHHhhccchhhhhhhhhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhcccC
Q 026238 95 NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (241)
Q Consensus 95 ~~~~~~al~~~~~~~a~~l~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li~~~~ 155 (241)
..+.+.|+.+.|++..+.+....-++..+++..++|||++++.+.|+.++++|..++...+
T Consensus 64 ~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~ 124 (300)
T PF05653_consen 64 EILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFA 124 (300)
T ss_pred hHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeC
Confidence 7788899999999999999999999999999999999999999999999999998776443
No 51
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=98.05 E-value=4.1e-05 Score=62.30 Aligned_cols=131 Identities=15% Similarity=0.179 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhcccCCCCCC
Q 026238 81 WYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDG 160 (241)
Q Consensus 81 ~~~~l~~~~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li~~~~~~~~~ 160 (241)
-+.+...+.-...+...-+.|+||.|-.+..+=-+.-|+-+++++..+.+++.+|++..+++++++|+++-...+. +.+
T Consensus 85 ~~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~-Kv~ 163 (337)
T KOG1580|consen 85 TKMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKEN-KVG 163 (337)
T ss_pred chHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhcccc-ccC
Confidence 4455555544344477888999999999999999999999999999999999999999999999999999988753 222
Q ss_pred C-CCCcchhHHHHHHHHHHHHHHHHHHHHHHhcc--CChHHHHHHHHHHHHHHHH
Q 026238 161 G-GGSRPLLGDVLVIAGTIFFATSNVGEEFFVKK--KDRVEVVCMIGVYGLLVSA 212 (241)
Q Consensus 161 ~-~~~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 212 (241)
+ .+.....|.++.+.|--.-+.....+++.... .+...++.+.++++.+.+.
T Consensus 164 g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg 218 (337)
T KOG1580|consen 164 GAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLG 218 (337)
T ss_pred CCcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhh
Confidence 2 23455689999999999999998888887444 3457788888999888875
No 52
>PRK13499 rhamnose-proton symporter; Provisional
Probab=98.03 E-value=0.00097 Score=58.12 Aligned_cols=165 Identities=10% Similarity=-0.041 Sum_probs=109.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHH----H-h-----hhhhhhhHHHHHH
Q 026238 17 LRTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLL----Y-R-----RQRLRVAWYWYLL 86 (241)
Q Consensus 17 ~~~~~g~~l~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~i~l~~~~~----~-~-----~~~~~~~~~~~l~ 86 (241)
++...|++.-.+.++|+++.....|+ .+......+..+ .- ++..+ +.|+.. . . ++.....+..-++
T Consensus 3 ~~~~~G~~~~~i~~~~~GS~~~p~K~-~k~w~wE~~W~v-~g-i~~wl-~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l 78 (345)
T PRK13499 3 NAIILGIIWHLIGGASSGSFYAPFKK-VKKWSWETMWSV-GG-IFSWL-ILPWLIAALLLPDFWAYYSSFSGSTLLPVFL 78 (345)
T ss_pred chhHHHHHHHHHHHHHhhcccccccc-cCCCchhHHHHH-HH-HHHHH-HHHHHHHHHHhhhHHHHHHhcCHHHHHHHHH
Confidence 35667999999999999999888877 432222222221 11 12111 122111 0 0 1111222444556
Q ss_pred HHHHHHHHHHHHHHHhhccchhhhhhh-hhchHHHHHHHHHHHhcccc-------hHHHHHHHHHHHHHhHhhcc----c
Q 026238 87 LGFVDVQGNFLVNKAYQFSSITSVTLL-DCCTIAWAIVLTWLFLGTRY-------SLWQLLGAALCVLGLGLVLL----S 154 (241)
Q Consensus 87 ~~~~~~~~~~~~~~al~~~~~~~a~~l-~~~~Pv~~~l~~~~~l~ek~-------~~~~~~g~~l~~~Gv~li~~----~ 154 (241)
.|.+-..++..+..++++.+.+.+..+ ..++-+...++..++++|=. ...-..|+++.++|+++... .
T Consensus 79 ~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~k 158 (345)
T PRK13499 79 FGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQLK 158 (345)
T ss_pred HHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 666666669999999999999999855 78888999999999998654 23468899999999999987 4
Q ss_pred CCCCCC--CCCCcchhHHHHHHHHHHHHHHHHH
Q 026238 155 DAGGDG--GGGSRPLLGDVLVIAGTIFFATSNV 185 (241)
Q Consensus 155 ~~~~~~--~~~~~~~~G~~l~l~a~~~~a~~~v 185 (241)
+..+.+ +.+.+..+|...+++|++.++.|+.
T Consensus 159 ~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~~ 191 (345)
T PRK13499 159 ERKMGIKKAEEFNLKKGLILAVMSGIFSACFSF 191 (345)
T ss_pred ccccccccccccchHhHHHHHHHHHHHHHHHHH
Confidence 321111 1234556899999999999999993
No 53
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.97 E-value=3.5e-05 Score=63.99 Aligned_cols=168 Identities=17% Similarity=0.178 Sum_probs=118.3
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHhhh--------hhhhh---HHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhhc
Q 026238 48 VDAPVTQSAFAYFSLALVYGGVLLYRRQ--------RLRVA---WYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCC 116 (241)
Q Consensus 48 ~~~p~~~~~~R~~~a~i~l~~~~~~~~~--------~~~~~---~~~~l~~~~~~~~~~~~~~~al~~~~~~~a~~l~~~ 116 (241)
-..|..+++...+....+...+-....+ +.+.+ .++.+-..+.-...-.+-+.+++|.+++.-.+=.++
T Consensus 58 Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVfi~mI~fnnlcL~yVgVaFYyvgRsL 137 (347)
T KOG1442|consen 58 LDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVFILMISFNNLCLKYVGVAFYYVGRSL 137 (347)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhheeeeehhccceehhhcceEEEEeccch
Confidence 3458888888887776655544321111 11111 233333343323223445578899999998899999
Q ss_pred hHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhcccCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhccCC-
Q 026238 117 TIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVLVIAGTIFFATSNVGEEFFVKKKD- 195 (241)
Q Consensus 117 ~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~- 195 (241)
..+|+.++..+++|||-+..-..+..+++.|-.+=...++ ..+...+.|.++++.|.++-|+..++.||.....+
T Consensus 138 ttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE~----~~~~ls~~GvifGVlaSl~vAlnaiytkk~l~~v~~ 213 (347)
T KOG1442|consen 138 TTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQEG----STGTLSWIGVIFGVLASLAVALNAIYTKKVLPPVGD 213 (347)
T ss_pred hhhHHHHhHHhhcccccccccceeehhheehheecccccc----ccCccchhhhHHHHHHHHHHHHHHHhhheecccccC
Confidence 9999999999999999999998888888888665332221 12345668999999999999999999998755533
Q ss_pred -hHHHHHHHHHHHHHHHHHHHHHhhh
Q 026238 196 -RVEVVCMIGVYGLLVSAVQLSILEL 220 (241)
Q Consensus 196 -~~~~~~~~~~~~~~~~~i~~~~~~~ 220 (241)
-.....+....+.++.. |..++.+
T Consensus 214 ~iw~lt~ynnv~a~lLfl-pll~lng 238 (347)
T KOG1442|consen 214 CIWRLTAYNNVNALLLFL-PLLILNG 238 (347)
T ss_pred eehhhHHHHHHHHHHHHH-HHHHHcc
Confidence 46788888888888885 8877644
No 54
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=97.90 E-value=0.00047 Score=55.84 Aligned_cols=145 Identities=16% Similarity=0.068 Sum_probs=109.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhcccCCCCC
Q 026238 80 AWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGD 159 (241)
Q Consensus 80 ~~~~~l~~~~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li~~~~~~~~ 159 (241)
+.+++...+++-...-+.--.+++|.++..-++.-++..+.++.....++|.|.+-.+..+..+.+..-+.-...|....
T Consensus 67 ~aK~WfpiSfLLv~MIyt~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~ 146 (309)
T COG5070 67 KAKKWFPISFLLVVMIYTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQAS 146 (309)
T ss_pred hhhhhcCHHHHHHHHHHhcccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHH
Confidence 34444455554444344445699999999999999999999999999999999999999999988888777666553111
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhccC--ChHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 026238 160 GGGGSRPLLGDVLVIAGTIFFATSNVGEEFFVKKK--DRVEVVCMIGVYGLLVSAVQLSILELKSLE 224 (241)
Q Consensus 160 ~~~~~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 224 (241)
.......+.|++|....++.-|.+....||..+-. .-.+-++|..+.+.+++.....++|+.+..
T Consensus 147 ~~~~~~lN~GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~ 213 (309)
T COG5070 147 AFKAQILNPGYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPG 213 (309)
T ss_pred HHHhcccCCceEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcc
Confidence 11223456899999999999999999999986543 346778899999998887555666655443
No 55
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.87 E-value=0.0003 Score=51.25 Aligned_cols=68 Identities=18% Similarity=0.274 Sum_probs=58.5
Q ss_pred HHHHHHHH-HHHHHHHhhccchhhhhhh-hhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhccc
Q 026238 87 LGFVDVQG-NFLVNKAYQFSSITSVTLL-DCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLS 154 (241)
Q Consensus 87 ~~~~~~~~-~~~~~~al~~~~~~~a~~l-~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li~~~ 154 (241)
..+.++.. ..++..++++.|.+.+-.+ ....-+.+.+.+++++||++++.+++|+.+.++|++.+-..
T Consensus 35 ~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~ 104 (110)
T PRK09541 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 44555555 7778899999999999866 66888999999999999999999999999999999998543
No 56
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.85 E-value=0.00021 Score=60.01 Aligned_cols=127 Identities=10% Similarity=0.054 Sum_probs=87.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHH---HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Q 026238 17 LRTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSA---FAYFSLALVYGGVLLYRRQRLRVAWYWYLLLGFVDVQ 93 (241)
Q Consensus 17 ~~~~~g~~l~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~---~R~~~a~i~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 93 (241)
++..+|+....+..+.++......+... .+|....+ .-++++++++..+. +++..+++.++-++.|++...
T Consensus 134 ~~~~kgi~~Ll~stigy~~Y~~~~~~~~----~~~~~~~lPqaiGm~i~a~i~~~~~--~~~~~~k~~~~nil~G~~w~i 207 (269)
T PF06800_consen 134 SNMKKGILALLISTIGYWIYSVIPKAFH----VSGWSAFLPQAIGMLIGAFIFNLFS--KKPFFEKKSWKNILTGLIWGI 207 (269)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhcC----CChhHhHHHHHHHHHHHHHHHhhcc--cccccccchHHhhHHHHHHHH
Confidence 4567899998889888888877766533 44444432 22233333222111 222222334455678888777
Q ss_pred HHHHHHHHhhccchhhhhhhhhchHHHHHHHHHHHhcccchHHHHH----HHHHHHHHhH
Q 026238 94 GNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLL----GAALCVLGLG 149 (241)
Q Consensus 94 ~~~~~~~al~~~~~~~a~~l~~~~Pv~~~l~~~~~l~ek~~~~~~~----g~~l~~~Gv~ 149 (241)
++.+++.|.+....+.+-.+..+.++.+.+.+.+++||+=+++++. |.++.++|.+
T Consensus 208 gnl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~i 267 (269)
T PF06800_consen 208 GNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAI 267 (269)
T ss_pred HHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhh
Confidence 7999999999999999999999999999999999999999988764 4444444443
No 57
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.80 E-value=0.00099 Score=48.39 Aligned_cols=63 Identities=17% Similarity=0.275 Sum_probs=54.8
Q ss_pred HHHHHH-HHHHHHHhhccchhhhh-hhhhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhh
Q 026238 89 FVDVQG-NFLVNKAYQFSSITSVT-LLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLV 151 (241)
Q Consensus 89 ~~~~~~-~~~~~~al~~~~~~~a~-~l~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li 151 (241)
..++.. .+++..++|+.|.+.+- +.....-+.+.+.+.+++||++++.++.|+.+.++|++.+
T Consensus 42 ~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 42 LAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 344444 77888999999999998 4567888899999999999999999999999999999876
No 58
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.77 E-value=0.0014 Score=49.84 Aligned_cols=127 Identities=18% Similarity=0.195 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhhh-hh---hhhHHHHHHHHHHHHHHHHHH
Q 026238 23 LFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQ-RL---RVAWYWYLLLGFVDVQGNFLV 98 (241)
Q Consensus 23 ~~l~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~i~l~~~~~~~~~-~~---~~~~~~~l~~~~~~~~~~~~~ 98 (241)
++++.+...+.+.....+..+.+. ..+|..-++.-+..+.+.+..+....++ .. ++..++....|.++...-.+.
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~-~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~w~~lGG~lG~~~V~~~ 81 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKA-LGSPLVASFISFGVGFILLLIILLITGRPSLASLSSVPWWAYLGGLLGVFFVLSN 81 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCChHHhccHHHHHHHHHHH
Confidence 456666777777777777777754 2258999999999998888777654433 21 222445556888888887778
Q ss_pred HHHhhccchhhhhhh-hhchHHHHHHHHHH----HhcccchHHHHHHHHHHHHHhHh
Q 026238 99 NKAYQFSSITSVTLL-DCCTIAWAIVLTWL----FLGTRYSLWQLLGAALCVLGLGL 150 (241)
Q Consensus 99 ~~al~~~~~~~a~~l-~~~~Pv~~~l~~~~----~l~ek~~~~~~~g~~l~~~Gv~l 150 (241)
..+....+++.+..+ ..-+-+..+++.++ .-|+++++++.+|+.+.++|+.+
T Consensus 82 ~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 82 IILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 888899999888854 55666667778876 45799999999999999999864
No 59
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.76 E-value=0.00069 Score=48.61 Aligned_cols=68 Identities=24% Similarity=0.246 Sum_probs=58.2
Q ss_pred HHHHHHHHH-HHHHHHHhhccchhhhh-hhhhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhcc
Q 026238 86 LLGFVDVQG-NFLVNKAYQFSSITSVT-LLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLL 153 (241)
Q Consensus 86 ~~~~~~~~~-~~~~~~al~~~~~~~a~-~l~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li~~ 153 (241)
+....++.. +.++..|+|+.|.+.|- +.....-+.+.+.+++++||+.+..+++|+.+.++|++.+-.
T Consensus 34 il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~ 103 (106)
T COG2076 34 ILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL 103 (106)
T ss_pred HHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence 333444555 88888999999999998 558888999999999999999999999999999999998754
No 60
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.70 E-value=0.00086 Score=49.58 Aligned_cols=69 Identities=17% Similarity=0.197 Sum_probs=58.9
Q ss_pred HHHHHHHH-HHHHHHHhhccchhhhhhh-hhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhcccC
Q 026238 87 LGFVDVQG-NFLVNKAYQFSSITSVTLL-DCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (241)
Q Consensus 87 ~~~~~~~~-~~~~~~al~~~~~~~a~~l-~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li~~~~ 155 (241)
..+..+.. .+++..++++.|.+.+-.+ ....-+.+.+.+.+++||++++.+++|+.+.++|++.+-..+
T Consensus 35 ~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 35 LMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 34444544 8888899999999999866 578999999999999999999999999999999999885443
No 61
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.70 E-value=0.001 Score=48.01 Aligned_cols=64 Identities=19% Similarity=0.064 Sum_probs=55.9
Q ss_pred HHHHHH-HHHHHHHhhccchhhhh-hhhhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhc
Q 026238 89 FVDVQG-NFLVNKAYQFSSITSVT-LLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVL 152 (241)
Q Consensus 89 ~~~~~~-~~~~~~al~~~~~~~a~-~l~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li~ 152 (241)
..++.. .+++..++++.|.+.+- +.....-+.+.+.+.+++||++++.++.|+.+.++|++.+-
T Consensus 36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence 444455 88888999999999998 45678889999999999999999999999999999999874
No 62
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=97.69 E-value=0.00015 Score=60.38 Aligned_cols=183 Identities=16% Similarity=0.129 Sum_probs=124.3
Q ss_pred HHHHHHHHHHH-HHHhhcCCCChHHHHHHHHHHHHHHHHHHHH-HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcc-c
Q 026238 30 SFTLALMSFTS-SLIADLGVDAPVTQSAFAYFSLALVYGGVLL-YRRQRLRVAWYWYLLLGFVDVQGNFLVNKAYQFS-S 106 (241)
Q Consensus 30 a~~~~~~~~~~-~~l~~~~~~~p~~~~~~R~~~a~i~l~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~-~ 106 (241)
.+.=|++++.. ..+.+.+..+-..+++..+++-+.--+++.- ....+++.+.+.+...-...+..+.+-+.|+++- +
T Consensus 11 vf~GCcsnvv~lE~L~~~~pgsgNLITFaqFlFia~eGlif~skf~~~k~kiplk~Y~i~V~mFF~vnv~NN~al~f~I~ 90 (330)
T KOG1583|consen 11 VFGGCCSNVVFLELLVRNEPGSGNLITFAQFLFIATEGLIFTSKFFTVKPKIPLKDYAITVAMFFIVNVTNNYALKFNIP 90 (330)
T ss_pred HHHhhhchHHHHHHHHHhCCCCeeehHHHHHHHHHHhceeeeccccccCCCCchhhhheehheeeeeeeeccceeeeccc
Confidence 33344455443 3444433333377787777766554443332 1122345556666665555455588889999984 5
Q ss_pred hhhhhhhhhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhcccCCCCC--------CC----CCCcchhHHHHHH
Q 026238 107 ITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGD--------GG----GGSRPLLGDVLVI 174 (241)
Q Consensus 107 ~~~a~~l~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li~~~~~~~~--------~~----~~~~~~~G~~l~l 174 (241)
...-.++.+-.++.++.+++++.|+|.+.+|..++++.-+|+++....+..|. .+ .......|..+..
T Consensus 91 ~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~~~~w~iGi~lL~ 170 (330)
T KOG1583|consen 91 MPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSDFFWWLIGIALLV 170 (330)
T ss_pred ceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCcccccchHHHHHHHHHH
Confidence 55666789999999999999999999999999999999999988865432110 01 1112346888888
Q ss_pred HHHHHHHHHHHHHHHHhcc--CChHHHHHHHHHHHHHHHH
Q 026238 175 AGTIFFATSNVGEEFFVKK--KDRVEVVCMIGVYGLLVSA 212 (241)
Q Consensus 175 ~a~~~~a~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 212 (241)
.|-+.-|.-.++++...++ .|+-+.++|.-+...+..+
T Consensus 171 ~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~Fl 210 (330)
T KOG1583|consen 171 FALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPLFL 210 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccchHH
Confidence 8888888888888877666 5789999999877765554
No 63
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.66 E-value=0.0019 Score=56.18 Aligned_cols=137 Identities=16% Similarity=0.113 Sum_probs=93.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHH-Hhhhhhh---hh---HHHHHHHHH
Q 026238 17 LRTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLL-YRRQRLR---VA---WYWYLLLGF 89 (241)
Q Consensus 17 ~~~~~g~~l~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~i~l~~~~~-~~~~~~~---~~---~~~~l~~~~ 89 (241)
.+..+|=++.+..+.+++.+++..+++.++ .|+......--+++.++..+.+. .++...+ .+ ...+...++
T Consensus 164 ~~~i~GDll~l~~a~lya~~nV~~E~~v~~--~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~ 241 (334)
T PF06027_consen 164 SNPILGDLLALLGAILYAVSNVLEEKLVKK--APRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYAL 241 (334)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHhccc--CCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHHH
Confidence 356789999999999999999998887743 34455443334555555544443 3332221 11 111111222
Q ss_pred HHHHHHHHHHHHhhccchhhhhhhhhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhcccC
Q 026238 90 VDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (241)
Q Consensus 90 ~~~~~~~~~~~al~~~~~~~a~~l~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li~~~~ 155 (241)
+.+..+.+.-..++++++....+=.-+..+++++++.+++|+++++...+|.++.++|.++....+
T Consensus 242 ~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~ 307 (334)
T PF06027_consen 242 CLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAE 307 (334)
T ss_pred HHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccC
Confidence 222224445567888888877777788999999999999999999999999999999999886544
No 64
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=97.60 E-value=0.0003 Score=58.54 Aligned_cols=197 Identities=17% Similarity=0.218 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHhhcCCCCh--HHHHHHHHHHHHHHHHHHHH-HhhhhhhhhHHHHHHHHHHHHH
Q 026238 18 RTLYLLFLGQLVSF-TLALMSFTSSLIADLGVDAP--VTQSAFAYFSLALVYGGVLL-YRRQRLRVAWYWYLLLGFVDVQ 93 (241)
Q Consensus 18 ~~~~g~~l~~~~a~-~~~~~~~~~~~l~~~~~~~p--~~~~~~R~~~a~i~l~~~~~-~~~~~~~~~~~~~l~~~~~~~~ 93 (241)
.+|...++-....+ .+-..+....+..+.....| +.+++..+..-..+.+.-+. .+.++...+|+.+..++.+-..
T Consensus 39 pkw~QFlic~~g~Ff~Yl~yGy~qElif~~~gfkp~GWylTlvQf~~Ysg~glie~~~~~~k~r~iP~rtY~~la~~t~g 118 (367)
T KOG1582|consen 39 PKWTQFLICSAGVFFLYLVYGYLQELIFNVEGFKPFGWYLTLVQFLVYSGFGLIELQLIQTKRRVIPWRTYVILAFLTVG 118 (367)
T ss_pred chhhhHHHHHhHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHhhhheEEEeecccceecchhHhhhhHhhhhh
Confidence 34444444333222 23334445555555545554 34455555443332222221 2223334568888888876555
Q ss_pred HHHHHHHHhhccchhhhhhhhhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhcccCCCCCCCCCCcchhHHHHH
Q 026238 94 GNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVLV 173 (241)
Q Consensus 94 ~~~~~~~al~~~~~~~a~~l~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~G~~l~ 173 (241)
..-+-..++.|.+-..-.+.-++--+-+++.+.++-++|..+....+..+..+|.++-...|. .. ..+-...|+.+.
T Consensus 119 tmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs--~~-sPNF~~~Gv~mI 195 (367)
T KOG1582|consen 119 TMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADS--QT-SPNFNLIGVMMI 195 (367)
T ss_pred ccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhccc--cc-CCCcceeeHHHH
Confidence 566677788888888888888888888999999999999999999999999999999887773 11 223345899999
Q ss_pred HHHHHHHHHHHHHHHHHhcc--CChHHHHHHHHHHHHHHHHHHHHH
Q 026238 174 IAGTIFFATSNVGEEFFVKK--KDRVEVVCMIGVYGLLVSAVQLSI 217 (241)
Q Consensus 174 l~a~~~~a~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~ 217 (241)
-.|-++-|+-.-+++|..+. .+..+++++...+|.+....|...
T Consensus 196 sgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvl 241 (367)
T KOG1582|consen 196 SGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVL 241 (367)
T ss_pred HHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHh
Confidence 99999999887777777665 456788999988898888755443
No 65
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=97.39 E-value=8.5e-05 Score=61.57 Aligned_cols=130 Identities=15% Similarity=0.160 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHH----HhhhhhhhhHHHHHHHHHHHHHHHHH
Q 026238 22 LLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLL----YRRQRLRVAWYWYLLLGFVDVQGNFL 97 (241)
Q Consensus 22 g~~l~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~i~l~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~ 97 (241)
|..-++..+.+.++...+-+++.+. .+......+--.++.+..+..+. .+.+.-+++++.+..+|+.|+.++.+
T Consensus 192 gt~aai~s~lf~asvyIilR~iGk~--~h~~msvsyf~~i~lV~s~I~~~~ig~~~lP~cgkdr~l~~~lGvfgfigQIl 269 (346)
T KOG4510|consen 192 GTVAAISSVLFGASVYIILRYIGKN--AHAIMSVSYFSLITLVVSLIGCASIGAVQLPHCGKDRWLFVNLGVFGFIGQIL 269 (346)
T ss_pred chHHHHHhHhhhhhHHHHHHHhhcc--ccEEEEehHHHHHHHHHHHHHHhhccceecCccccceEEEEEehhhhhHHHHH
Confidence 3445555555566666677777643 22222221222222222222221 23333456677778889999999999
Q ss_pred HHHHhhccchhhhhhhhhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhcc
Q 026238 98 VNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLL 153 (241)
Q Consensus 98 ~~~al~~~~~~~a~~l~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li~~ 153 (241)
...++|.-.++..+++.++..++..+.-.+++|+-|+++.|.|+++.+...+....
T Consensus 270 lTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~ 325 (346)
T KOG4510|consen 270 LTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVAL 325 (346)
T ss_pred HHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHH
Confidence 99999999999999999999999999999999999999999999988777666653
No 66
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=97.26 E-value=3.5e-05 Score=63.03 Aligned_cols=165 Identities=15% Similarity=0.110 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhHHHHHHHHHHHHHHHHHHHH
Q 026238 22 LLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQRL-RVAWYWYLLLGFVDVQGNFLVNK 100 (241)
Q Consensus 22 g~~l~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~i~l~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~ 100 (241)
.++++.+=++.|+....+..+.. -+|..+......-+.++.+.+++...+.. .+.+..-++.|.+-..++...+.
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~G----G~p~qQ~lGtT~GALifaiiv~~~~~p~~T~~~~iv~~isG~~Ws~GQ~~Qfk 78 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKFG----GKPYQQTLGTTLGALIFAIIVFLFVSPELTLTIFIVGFISGAFWSFGQANQFK 78 (288)
T ss_pred hHHHHHHHHHHhcccceeeeecC----CChhHhhhhccHHHHHHHHHHheeecCccchhhHHHHHHhhhHhhhhhhhhhh
Confidence 46677777788887776654443 35777774544444444444443322222 22244444556666666899999
Q ss_pred Hhhccchhhhhhh-hhchHHHHHHHHHHHhcccchHHH----HHHHHHHHHHhHhhcccCCCCCCCCC-CcchhHHHHHH
Q 026238 101 AYQFSSITSVTLL-DCCTIAWAIVLTWLFLGTRYSLWQ----LLGAALCVLGLGLVLLSDAGGDGGGG-SRPLLGDVLVI 174 (241)
Q Consensus 101 al~~~~~~~a~~l-~~~~Pv~~~l~~~~~l~ek~~~~~----~~g~~l~~~Gv~li~~~~~~~~~~~~-~~~~~G~~l~l 174 (241)
|.++.+++.+..+ ..++-+-+.+++.+.++|-.+..+ ..++++.++|+.+-...+.++.+.++ .+.-+|....+
T Consensus 79 a~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~~~~~~n~kkgi~~L~ 158 (288)
T COG4975 79 AIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKEEENPSNLKKGIVILL 158 (288)
T ss_pred heeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccccccccChHhhhhheeeee
Confidence 9999999999976 567777799999999999988876 45777888888888777642222222 23457999889
Q ss_pred HHHHHHHHHHHHHHHH
Q 026238 175 AGTIFFATSNVGEEFF 190 (241)
Q Consensus 175 ~a~~~~a~~~v~~~~~ 190 (241)
.|.+.|-.|.+..+-.
T Consensus 159 iSt~GYv~yvvl~~~f 174 (288)
T COG4975 159 ISTLGYVGYVVLFQLF 174 (288)
T ss_pred eeccceeeeEeeeccc
Confidence 9999999998888775
No 67
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.15 E-value=0.0053 Score=43.31 Aligned_cols=57 Identities=18% Similarity=0.176 Sum_probs=33.1
Q ss_pred HHHHHHH-HHHHHHHhhccchhhhhh-hhhchHHHHHHHHHHHhcccchHHHHHHHHHH
Q 026238 88 GFVDVQG-NFLVNKAYQFSSITSVTL-LDCCTIAWAIVLTWLFLGTRYSLWQLLGAALC 144 (241)
Q Consensus 88 ~~~~~~~-~~~~~~al~~~~~~~a~~-l~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~ 144 (241)
.+..+.. ..++..++++.|.+.+-. ......+.+.+.+.+++||+++..++.|+.+.
T Consensus 35 ~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 35 AVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 3334444 778889999999999975 46799999999999999999999999998763
No 68
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=97.10 E-value=0.0098 Score=49.69 Aligned_cols=49 Identities=12% Similarity=0.143 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhhchHHHHHHHHHHH
Q 026238 80 AWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLF 128 (241)
Q Consensus 80 ~~~~~l~~~~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pv~~~l~~~~~ 128 (241)
+|......|++...++.+++.++++.|++.++...|+.|+++.+++.+.
T Consensus 207 ~~~~l~~~g~~t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 207 IWLLLVLAGLITGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 5666667777655459999999999999999999999999999998764
No 69
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=97.08 E-value=0.0071 Score=49.51 Aligned_cols=65 Identities=18% Similarity=0.316 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHhhccchhhhhhhhhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHh
Q 026238 86 LLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGL 150 (241)
Q Consensus 86 ~~~~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~l 150 (241)
...+.......+....++|.++..-++...+.++.+.+++.++++|+++..++.|..+.+.|+.+
T Consensus 157 ~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 157 IVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 33344444477788899999999999999999999999999999999999999999999988653
No 70
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=96.91 E-value=0.0029 Score=46.14 Aligned_cols=68 Identities=18% Similarity=0.298 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhccchhhhhhh-hhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhh
Q 026238 84 YLLLGFVDVQGNFLVNKAYQFSSITSVTLL-DCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLV 151 (241)
Q Consensus 84 ~l~~~~~~~~~~~~~~~al~~~~~~~a~~l-~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li 151 (241)
+.+.=.+...++..|+..+...|.+.+..+ +++.=++|++.++++.+|..+++.++|+.+.+.|+.+.
T Consensus 44 y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 44 YIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 433333455558999999999999999977 68888999999998888888999999999999998764
No 71
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=96.69 E-value=0.0067 Score=52.32 Aligned_cols=137 Identities=16% Similarity=0.145 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh--cCCCChHHHHHHHHHHHHHHHH-HHHHHhhhhh---------hhhHHHHHH
Q 026238 19 TLYLLFLGQLVSFTLALMSFTSSLIAD--LGVDAPVTQSAFAYFSLALVYG-GVLLYRRQRL---------RVAWYWYLL 86 (241)
Q Consensus 19 ~~~g~~l~~~~a~~~~~~~~~~~~l~~--~~~~~p~~~~~~R~~~a~i~l~-~~~~~~~~~~---------~~~~~~~l~ 86 (241)
.+.|..-+....+..+.-...++.+.+ ....++......---.+.++++ |+.....+.. ..+......
T Consensus 161 n~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (316)
T KOG1441|consen 161 NLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILLL 240 (316)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHHH
Confidence 457888888888888888888877663 3455666666565567777777 8766433211 112333444
Q ss_pred HHHHHHHHHHHHHHHhhccchhhhhhhhhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhcccC
Q 026238 87 LGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (241)
Q Consensus 87 ~~~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li~~~~ 155 (241)
..++.+..|...+..+.++++-+-++....-=+.+...++.+++|+.+..+..|..+++.|+.+....+
T Consensus 241 ~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k 309 (316)
T KOG1441|consen 241 NSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAK 309 (316)
T ss_pred HHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHh
Confidence 445656669999999999999999999988888899999999999999999999999999999886543
No 72
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=96.63 E-value=0.13 Score=43.54 Aligned_cols=75 Identities=21% Similarity=0.315 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhcccC
Q 026238 81 WYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (241)
Q Consensus 81 ~~~~l~~~~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li~~~~ 155 (241)
+..+...|........++..|-+++|-+...++.|..|....+++.++++|+++..+..+-++.-.|+++...++
T Consensus 211 ~~LLv~aG~vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~ 285 (293)
T COG2962 211 WLLLVLAGLVTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDG 285 (293)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455444448889999999999999999999999999999999999999999999999999988876543
No 73
>PRK13499 rhamnose-proton symporter; Provisional
Probab=96.59 E-value=0.16 Score=44.49 Aligned_cols=138 Identities=14% Similarity=0.040 Sum_probs=80.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH-------HHHHHhhcCCCChHHHHHHHHH---HHHHHH-HHHHHH---hhhhh---
Q 026238 15 VTLRTLYLLFLGQLVSFTLALMSF-------TSSLIADLGVDAPVTQSAFAYF---SLALVY-GGVLLY---RRQRL--- 77 (241)
Q Consensus 15 ~~~~~~~g~~l~~~~a~~~~~~~~-------~~~~l~~~~~~~p~~~~~~R~~---~a~i~l-~~~~~~---~~~~~--- 77 (241)
+|+++.||+.+++++.+.+++.++ ..+...+ ...+|.....-.+. ++..+. +.++.. ++++.
T Consensus 168 ~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~-~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~ 246 (345)
T PRK13499 168 EEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAA-LGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLK 246 (345)
T ss_pred cccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhh-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccc
Confidence 356788999999999999999883 2222212 23445544444443 443333 333331 21111
Q ss_pred ------hhh-HHHH---HHHHHHHHHHHHHHHHHhhccchhhhhh---hh-hchHHHHHHHHHHHhcccch------HHH
Q 026238 78 ------RVA-WYWY---LLLGFVDVQGNFLVNKAYQFSSITSVTL---LD-CCTIAWAIVLTWLFLGTRYS------LWQ 137 (241)
Q Consensus 78 ------~~~-~~~~---l~~~~~~~~~~~~~~~al~~~~~~~a~~---l~-~~~Pv~~~l~~~~~l~ek~~------~~~ 137 (241)
|++ ++.+ .+.|+.-...+.++..+-+..+.+.+.. +. .+..++..+.+. ++||+=+ +..
T Consensus 247 ~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l 325 (345)
T PRK13499 247 ADFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVL 325 (345)
T ss_pred hhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHH
Confidence 111 2333 3334444444777777777776555544 55 555577777776 5888766 456
Q ss_pred HHHHHHHHHHhHhhccc
Q 026238 138 LLGAALCVLGLGLVLLS 154 (241)
Q Consensus 138 ~~g~~l~~~Gv~li~~~ 154 (241)
+.|.++.++|.+++...
T Consensus 326 ~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 326 SLGCVVIILAANIVGLG 342 (345)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 88888888888887643
No 74
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.53 E-value=0.13 Score=39.41 Aligned_cols=129 Identities=16% Similarity=0.178 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhhhh--h---hhhHHHHHHHHHHHHHHHH
Q 026238 22 LLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQR--L---RVAWYWYLLLGFVDVQGNF 96 (241)
Q Consensus 22 g~~l~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~i~l~~~~~~~~~~--~---~~~~~~~l~~~~~~~~~~~ 96 (241)
.++.+.....+....+.+...+++. ..+|..-++.-+..+.+.+..+...+.++ . ++..++....|.+|...-.
T Consensus 6 ~ll~~i~aG~~l~~Q~~iN~qL~~~-~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~GG~lGa~~vt 84 (150)
T COG3238 6 YLLFAILAGALLPLQAAINGRLARY-LGSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIGGLLGAIFVT 84 (150)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHH-cCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHccchhhhhhh
Confidence 4556666666666677777777654 33688888899999887777666543221 1 1224455566666655533
Q ss_pred HHHHHhhccchhhh-hhhhhchHHHHHHHHHHHh----cccchHHHHHHHHHHHHHhHhh
Q 026238 97 LVNKAYQFSSITSV-TLLDCCTIAWAIVLTWLFL----GTRYSLWQLLGAALCVLGLGLV 151 (241)
Q Consensus 97 ~~~~al~~~~~~~a-~~l~~~~Pv~~~l~~~~~l----~ek~~~~~~~g~~l~~~Gv~li 151 (241)
.-........++.. .+...-+-+..+++..+=. +++++..++.|+++.++|+.+.
T Consensus 85 ~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~ 144 (150)
T COG3238 85 SSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLA 144 (150)
T ss_pred hhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHh
Confidence 33344455555444 4667777777777777654 4889999999999999994443
No 75
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=96.33 E-value=0.066 Score=44.02 Aligned_cols=73 Identities=16% Similarity=0.243 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhcc
Q 026238 81 WYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLL 153 (241)
Q Consensus 81 ~~~~l~~~~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li~~ 153 (241)
++.+.+.++++..++++.+.-..+-++-.-+++..+--.++.+.+.++++.+++.+||+|..+.+.|...=..
T Consensus 241 ~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~ 313 (337)
T KOG1580|consen 241 FWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVV 313 (337)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhh
Confidence 7788899999999999999999999999999999999999999999999999999999999999998765443
No 76
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=96.04 E-value=0.076 Score=46.42 Aligned_cols=138 Identities=19% Similarity=0.139 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCChHHHHHHHHHHHHHHHHHHHH----Hhhhhh----hhhHHHHHHH
Q 026238 18 RTLYLLFLGQLVSFTLALMSFTSSLIADLG--VDAPVTQSAFAYFSLALVYGGVLL----YRRQRL----RVAWYWYLLL 87 (241)
Q Consensus 18 ~~~~g~~l~~~~a~~~~~~~~~~~~l~~~~--~~~p~~~~~~R~~~a~i~l~~~~~----~~~~~~----~~~~~~~l~~ 87 (241)
+-..|-+++++.|+.++...+..+.-..++ .++--..-.+--++..+++.|.++ ..+.+. ..+..-+++.
T Consensus 244 ~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~ 323 (416)
T KOG2765|consen 244 RPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFN 323 (416)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHh
Confidence 556899999999999999998887665332 344222222222444555554443 111111 1223345566
Q ss_pred HHHHHHH-HHHHHHHhhccchhhhhhhhhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhcccC
Q 026238 88 GFVDVQG-NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (241)
Q Consensus 88 ~~~~~~~-~~~~~~al~~~~~~~a~~l~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li~~~~ 155 (241)
++.+... .++...|.-.+++-.+++=+..+....++...++.++++++...+|....++|-+.+...+
T Consensus 324 ~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~ 392 (416)
T KOG2765|consen 324 NLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISS 392 (416)
T ss_pred hHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccc
Confidence 6777777 8889999999999999988888888889999999999999999999999999999887665
No 77
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.00 E-value=0.0048 Score=52.66 Aligned_cols=121 Identities=19% Similarity=0.209 Sum_probs=85.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 026238 16 TLRTLYLLFLGQLVSFTLALMSFTSSLIADL-GVDAPVTQSAFAYFSLALVYGGVLLYRRQRLRVAWYWYLLLGFVDVQG 94 (241)
Q Consensus 16 ~~~~~~g~~l~~~~a~~~~~~~~~~~~l~~~-~~~~p~~~~~~R~~~a~i~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 94 (241)
.+|+.+|+.+++...++++.+--+.|+--++ +. ...|.--+. .+-++. +..+.|.+-...
T Consensus 16 ~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~------~~~ra~~gg----------~~yl~~---~~Ww~G~ltm~v 76 (335)
T KOG2922|consen 16 SSDNIIGLVLAISSSIFIGSSFILKKKGLKRAGA------SGLRAGEGG----------YGYLKE---PLWWAGMLTMIV 76 (335)
T ss_pred ccCceeeeeehhhccEEEeeehhhhHHHHHHHhh------hcccccCCC----------cchhhh---HHHHHHHHHHHH
Confidence 3478899999998888777665554443221 10 101110000 001122 233455554555
Q ss_pred -HHHHHHHhhccchhhhhhhhhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhcccC
Q 026238 95 -NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (241)
Q Consensus 95 -~~~~~~al~~~~~~~a~~l~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li~~~~ 155 (241)
...-+.|+.+.|++-.+.+-+++.+..++++..++|||+++...+|..++++|-..++...
T Consensus 77 Gei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~ha 138 (335)
T KOG2922|consen 77 GEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHA 138 (335)
T ss_pred HhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEec
Confidence 8888999999999999999999999999999999999999999999999999988887654
No 78
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=95.91 E-value=0.093 Score=44.64 Aligned_cols=134 Identities=13% Similarity=0.040 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhhhh------h---hhhHHHHHHHHH
Q 026238 19 TLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQR------L---RVAWYWYLLLGF 89 (241)
Q Consensus 19 ~~~g~~l~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~i~l~~~~~~~~~~------~---~~~~~~~l~~~~ 89 (241)
...|+.+-..--++=+..+.....+.+...+++..+.+.--+..+++-...+..++.. . ++-++.+++.+.
T Consensus 170 s~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s~ 249 (327)
T KOG1581|consen 170 SPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYST 249 (327)
T ss_pred chHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHHH
Confidence 3455555444333333444444455545566777777666666666655444433211 1 122788999999
Q ss_pred HHHHHHHHHHHHhhccchhhhhhhhhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhc
Q 026238 90 VDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVL 152 (241)
Q Consensus 90 ~~~~~~~~~~~al~~~~~~~a~~l~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li~ 152 (241)
++..++.+.+.-++.-++-.-++++.+--+++++++.+.++.++++.||.|+.+.+.|+.+=.
T Consensus 250 ~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~ 312 (327)
T KOG1581|consen 250 CGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEI 312 (327)
T ss_pred hhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHH
Confidence 999998888888888888888888889999999999999999999999999999998877654
No 79
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=95.81 E-value=0.5 Score=41.07 Aligned_cols=168 Identities=12% Similarity=0.134 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHH--h--------hhhhhhhHHHHHHH
Q 026238 18 RTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLY--R--------RQRLRVAWYWYLLL 87 (241)
Q Consensus 18 ~~~~g~~l~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~i~l~~~~~~--~--------~~~~~~~~~~~l~~ 87 (241)
....|++.-.+.+++.++....-|+..+ .+ ++.-+.-..+...+.+|...- . +...........+.
T Consensus 4 ~ii~Gii~h~iGg~~~~sfy~P~kkvk~---Ws-WEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~ 79 (344)
T PF06379_consen 4 AIILGIIFHAIGGFASGSFYVPFKKVKG---WS-WESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLF 79 (344)
T ss_pred hHHHHHHHHHHHHHHhhhhccchhhcCC---cc-HHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHH
Confidence 4556788888888888877777666552 22 333333344444445555431 1 11112234445556
Q ss_pred HHHHHHHHHHHHHHhhccchhhhh-hhhhchHHHHHHHHHHHhc-------ccchHHHHHHHHHHHHHhHhhcccCCC--
Q 026238 88 GFVDVQGNFLVNKAYQFSSITSVT-LLDCCTIAWAIVLTWLFLG-------TRYSLWQLLGAALCVLGLGLVLLSDAG-- 157 (241)
Q Consensus 88 ~~~~~~~~~~~~~al~~~~~~~a~-~l~~~~Pv~~~l~~~~~l~-------ek~~~~~~~g~~l~~~Gv~li~~~~~~-- 157 (241)
|++--.+...|=.+++|+..+-.. +...+.-++-.++-.++.+ ++-....++|+++.++|+.++...+..
T Consensus 80 G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~Ke 159 (344)
T PF06379_consen 80 GVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMKE 159 (344)
T ss_pred HHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhhh
Confidence 665555577788899999887665 5566666666666555543 233456899999999999998655431
Q ss_pred -C--CCCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 026238 158 -G--DGGGGSRPLLGDVLVIAGTIFFATSNVGEEF 189 (241)
Q Consensus 158 -~--~~~~~~~~~~G~~l~l~a~~~~a~~~v~~~~ 189 (241)
+ .+..+.+.-+|.+.++.|++.-|.++.-.+.
T Consensus 160 ~~~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~a 194 (344)
T PF06379_consen 160 KELGEEAKEFNFKKGLIIAVLSGVMSACFNFGLDA 194 (344)
T ss_pred hhhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHc
Confidence 1 1112334558999999999998888876653
No 80
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=95.72 E-value=0.29 Score=40.85 Aligned_cols=127 Identities=20% Similarity=0.188 Sum_probs=86.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHH-Hhhhhhhhh-----HHHHHHHHH-
Q 026238 17 LRTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLL-YRRQRLRVA-----WYWYLLLGF- 89 (241)
Q Consensus 17 ~~~~~g~~l~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~i~l~~~~~-~~~~~~~~~-----~~~~l~~~~- 89 (241)
.+...|+..-.+.+++.+..++...++.+.+..+.......-+..+.++.+.... .++.+.+++ +-...+.-+
T Consensus 110 ~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~~~~~~~i~ 189 (244)
T PF04142_consen 110 QNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHGYSWWVWIVIF 189 (244)
T ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhhcchHHHHHHH
Confidence 4567898888888888999999988887776677777776666666555554443 322222211 111112222
Q ss_pred HHHHHHHHHHHHhhccchhhhhhhhhchHHHHHHHHHHHhcccchHHHHHHHHH
Q 026238 90 VDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAAL 143 (241)
Q Consensus 90 ~~~~~~~~~~~al~~~~~~~a~~l~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l 143 (241)
....+-...-..+||.+.-.=..-....-+.+.+++..+++.+++....+|..+
T Consensus 190 ~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~ 243 (244)
T PF04142_consen 190 LQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAAL 243 (244)
T ss_pred HHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheec
Confidence 222225556668899888777788888899999999999999999998887653
No 81
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=95.03 E-value=0.32 Score=39.68 Aligned_cols=88 Identities=17% Similarity=0.141 Sum_probs=59.0
Q ss_pred hhhhhhhhhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhcccCC--------------------CCCCCCCCcc
Q 026238 107 ITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDA--------------------GGDGGGGSRP 166 (241)
Q Consensus 107 ~~~a~~l~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li~~~~~--------------------~~~~~~~~~~ 166 (241)
........+..|+++++.+....+||.++.++++.++...|++.-...+. .+......+.
T Consensus 4 vPa~~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g~~ 83 (222)
T TIGR00803 4 VPIHIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFGNP 83 (222)
T ss_pred ccchHHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccccccH
Confidence 34455667778888888888888888888888888888888764221110 0000111244
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccC
Q 026238 167 LLGDVLVIAGTIFFATSNVGEEFFVKKK 194 (241)
Q Consensus 167 ~~G~~l~l~a~~~~a~~~v~~~~~~~~~ 194 (241)
..|..+.+.+..+-+...++.+|..++.
T Consensus 84 ~~g~~~~l~a~~~~~~~~~y~e~~~k~~ 111 (222)
T TIGR00803 84 VVGLSAVLSALLSSGFAGVYFEKILKDG 111 (222)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHcccCC
Confidence 5777778888888888899999875543
No 82
>PRK02237 hypothetical protein; Provisional
Probab=94.44 E-value=1.2 Score=32.06 Aligned_cols=50 Identities=22% Similarity=0.571 Sum_probs=37.6
Q ss_pred chhhhhh-hhhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhcccC
Q 026238 106 SITSVTL-LDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (241)
Q Consensus 106 ~~~~a~~-l~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li~~~~ 155 (241)
+.+.+-. --....+.+.+..+..-|+||+++.++|..++++|+.++...+
T Consensus 57 ~~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~p 107 (109)
T PRK02237 57 AFGRVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAP 107 (109)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecC
Confidence 3444432 2334455667888999999999999999999999998886543
No 83
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=93.81 E-value=0.0078 Score=49.59 Aligned_cols=130 Identities=16% Similarity=0.166 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHh-hhhhhhhHHHHHHHHHHHHHHHH
Q 026238 18 RTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYR-RQRLRVAWYWYLLLGFVDVQGNF 96 (241)
Q Consensus 18 ~~~~g~~l~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~i~l~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~ 96 (241)
++.+|+.......+.+....+..+...-+ ..++..=....++++++++- ..+ .++..+.-+.-++.|+.-..+|.
T Consensus 149 n~kkgi~~L~iSt~GYv~yvvl~~~f~v~-g~saiLPqAiGMv~~ali~~---~~~~~~~~~K~t~~nii~G~~Wa~GNl 224 (288)
T COG4975 149 NLKKGIVILLISTLGYVGYVVLFQLFDVD-GLSAILPQAIGMVIGALILG---FFKMEKRFNKYTWLNIIPGLIWAIGNL 224 (288)
T ss_pred hhhhheeeeeeeccceeeeEeeecccccc-chhhhhHHHHHHHHHHHHHh---hcccccchHHHHHHHHhhHHHHHhhHH
Confidence 35578888777777766665555544422 23333333355555555432 222 12222223345577877777799
Q ss_pred HHHHHhhccchhhhhhhhhchHHHHHHHHHHHhcccchHHHHH----HHHHHHHHhHhh
Q 026238 97 LVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLL----GAALCVLGLGLV 151 (241)
Q Consensus 97 ~~~~al~~~~~~~a~~l~~~~Pv~~~l~~~~~l~ek~~~~~~~----g~~l~~~Gv~li 151 (241)
+++.|-+....+++=-+..+..+.+.+-+.+++|||=+++++. |+++.++|.+++
T Consensus 225 ~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~l 283 (288)
T COG4975 225 FMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILL 283 (288)
T ss_pred HHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhh
Confidence 9999999988888888899999999999999999999998865 445555555544
No 84
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=93.64 E-value=0.27 Score=37.26 Aligned_cols=54 Identities=20% Similarity=0.221 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-------CChHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 026238 169 GDVLVIAGTIFFATSNVGEEFFVKK-------KDRVEVVCMIGVYGLLVSAVQLSILELKS 222 (241)
Q Consensus 169 G~~l~l~a~~~~a~~~v~~~~~~~~-------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 222 (241)
|.++++.|.++.|++.++.|+..++ .++.+...+....+.+.+..+....|+..
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~ 61 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQ 61 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 6789999999999999999987544 46889999999999988874455556544
No 85
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=93.32 E-value=1 Score=32.30 Aligned_cols=54 Identities=26% Similarity=0.556 Sum_probs=40.7
Q ss_pred hhccchhhhh-hhhhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhcccC
Q 026238 102 YQFSSITSVT-LLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (241)
Q Consensus 102 l~~~~~~~a~-~l~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li~~~~ 155 (241)
++-.+.+.+- .-=....+.+.+..+.+-|+||++..++|..++++|+.++...+
T Consensus 51 l~p~~fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~P 105 (107)
T PF02694_consen 51 LQPAAFGRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAP 105 (107)
T ss_pred cCcccchhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecC
Confidence 4444444443 23344566778889999999999999999999999999987654
No 86
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=93.08 E-value=1.6 Score=36.94 Aligned_cols=136 Identities=14% Similarity=0.045 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHH---Hhhhhh-hh----------hHHH
Q 026238 18 RTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLL---YRRQRL-RV----------AWYW 83 (241)
Q Consensus 18 ~~~~g~~l~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~i~l~~~~~---~~~~~~-~~----------~~~~ 83 (241)
....|+.+..++.+..+-++.......+..+-++-+..++-..+....++...- -+++.. +. ....
T Consensus 161 ~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~ 240 (330)
T KOG1583|consen 161 WWLIGIALLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPS 240 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCccccH
Confidence 456888888888888888888877777665667788888888777766543321 111110 00 0111
Q ss_pred HHHHHHHHHHHHHHHHHHh----hccchhhhhhhhhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhcc
Q 026238 84 YLLLGFVDVQGNFLVNKAY----QFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLL 153 (241)
Q Consensus 84 ~l~~~~~~~~~~~~~~~al----~~~~~~~a~~l~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li~~ 153 (241)
..+.-++....++.-..+. ..+++-++++....-=.++.+++.+.++.+.+++.|+|..+.++|.++-..
T Consensus 241 ~~~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~ 314 (330)
T KOG1583|consen 241 MWVYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFAN 314 (330)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 1111122222233322222 224556677778888999999999999999999999999999999988753
No 87
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.75 E-value=1.5 Score=37.60 Aligned_cols=135 Identities=10% Similarity=-0.025 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhhh--hh---------hhhHHHHHHHHH
Q 026238 21 YLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQ--RL---------RVAWYWYLLLGF 89 (241)
Q Consensus 21 ~g~~l~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~i~l~~~~~~~~~--~~---------~~~~~~~l~~~~ 89 (241)
.|....+.-.+..+......|.-.+.....-+.+.++.-+++...+......... .. ...+-.+.+.|+
T Consensus 157 ~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv 236 (314)
T KOG1444|consen 157 RGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSCV 236 (314)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHHH
Confidence 3555555555555555555444433333344556666666666655444322211 00 011456778888
Q ss_pred HHHHHHHHHHHHhhccchhhhhhhhhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhcccC
Q 026238 90 VDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (241)
Q Consensus 90 ~~~~~~~~~~~al~~~~~~~a~~l~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li~~~~ 155 (241)
+++..+++..+..+..++..-++.-...-..+.+...++.+++.++....|+.+++.|-++-....
T Consensus 237 ~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~ 302 (314)
T KOG1444|consen 237 MGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYAT 302 (314)
T ss_pred HHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhh
Confidence 888889999999999998888877766667777788888889999999999999999988876544
No 88
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=91.97 E-value=2.1 Score=36.23 Aligned_cols=114 Identities=12% Similarity=0.139 Sum_probs=78.9
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhhh----------hhhhhHHHHHHHHHHHHHHHHHHHHHhhccchhhhh
Q 026238 42 LIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQ----------RLRVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVT 111 (241)
Q Consensus 42 ~l~~~~~~~p~~~~~~R~~~a~i~l~~~~~~~~~----------~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~a~ 111 (241)
...+....+...++++-+.++.++++........ .+.+......+.+..++.+..+...=++--++..++
T Consensus 211 k~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aa 290 (367)
T KOG1582|consen 211 KAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSLAGYLGIVFVLALIKLFGALIAA 290 (367)
T ss_pred HHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHH
Confidence 3333334445666777777776666554443321 112224445555666666644444445556888899
Q ss_pred hhhhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhcccC
Q 026238 112 LLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (241)
Q Consensus 112 ~l~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li~~~~ 155 (241)
.+...---.|++++.+++.++.+-+...+.++.+.|+.+=..++
T Consensus 291 tvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 291 TVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred HHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence 99999999999999999999999999999999999999877765
No 89
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=91.63 E-value=0.37 Score=34.72 Aligned_cols=42 Identities=17% Similarity=0.061 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHhhh
Q 026238 178 IFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILEL 220 (241)
Q Consensus 178 ~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 220 (241)
++||.+.+..|+..++.|+...+.+....+.+ ..+.....+.
T Consensus 1 ~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 42 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKKISPLSITFWRFLIAGI-LLILLLILGR 42 (126)
T ss_pred ceeeeHHHHHHHHhccCCHHHHHHHHHHHHHH-HHHHHHhhcc
Confidence 47899999999998999999999999999987 5433333433
No 90
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=89.03 E-value=14 Score=31.87 Aligned_cols=131 Identities=15% Similarity=0.136 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc---CCCChHHHHHHHHHHHHHHHHHHHH-Hhhhh-------hhh-----hHHHH
Q 026238 21 YLLFLGQLVSFTLALMSFTSSLIADL---GVDAPVTQSAFAYFSLALVYGGVLL-YRRQR-------LRV-----AWYWY 84 (241)
Q Consensus 21 ~g~~l~~~~a~~~~~~~~~~~~l~~~---~~~~p~~~~~~R~~~a~i~l~~~~~-~~~~~-------~~~-----~~~~~ 84 (241)
.|..+-...+.+.+.-+..++.+.++ +.-+|....+.-.-...+.++|... ..+.. .+. .++.+
T Consensus 164 ~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~ 243 (349)
T KOG1443|consen 164 EGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVI 243 (349)
T ss_pred hhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHH
Confidence 67777777777777777788877643 2234665554444444444444433 22211 111 12333
Q ss_pred HHHHHHHHHH---HHHHHHHhhccchhhhhhhhhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhh
Q 026238 85 LLLGFVDVQG---NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLV 151 (241)
Q Consensus 85 l~~~~~~~~~---~~~~~~al~~~~~~~a~~l~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li 151 (241)
-.++..+... -...+.=+..++.-..++.--.-=+.+.+++....+|+++...|.|..++..|+.+-
T Consensus 244 g~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 244 GLISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred HHHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 3333333333 344445556677666666666677889999999999999999999999999998876
No 91
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.96 E-value=0.64 Score=39.24 Aligned_cols=135 Identities=15% Similarity=0.160 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhhh--------hh-hhh-HHHHHHHH
Q 026238 19 TLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQ--------RL-RVA-WYWYLLLG 88 (241)
Q Consensus 19 ~~~g~~l~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~i~l~~~~~~~~~--------~~-~~~-~~~~l~~~ 88 (241)
-+.|+++|+..++.-+..+..+++.-..-...-+.++++.-+.+.++++|.+...+. .. ..+ |..+.+.|
T Consensus 183 s~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsg 262 (347)
T KOG1442|consen 183 SWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSG 262 (347)
T ss_pred chhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHH
Confidence 458999999999999999888874432212234667778889999999998864321 11 112 33334445
Q ss_pred HHHHHHHHHHHHHhhccchhhhhhhhhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhcc
Q 026238 89 FVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLL 153 (241)
Q Consensus 89 ~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li~~ 153 (241)
++|+..++.-.+=+|.++|-+-.+=-..-...=.+++..+++|.-+...|.+-.+.+.|......
T Consensus 263 lfgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~ 327 (347)
T KOG1442|consen 263 LFGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTL 327 (347)
T ss_pred HHHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHH
Confidence 55554444333344455554333333333444567888999999999999999888888777654
No 92
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=88.59 E-value=7.1 Score=27.91 Aligned_cols=40 Identities=28% Similarity=0.620 Sum_probs=33.6
Q ss_pred chHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhcccC
Q 026238 116 CTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (241)
Q Consensus 116 ~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li~~~~ 155 (241)
...+.+.+..++.-|.+|+++.+.|..++++|+.++...+
T Consensus 67 vyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~p 106 (109)
T COG1742 67 VYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGP 106 (109)
T ss_pred hHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCC
Confidence 3455667778888999999999999999999988887654
No 93
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=88.47 E-value=1.1 Score=32.09 Aligned_cols=70 Identities=20% Similarity=0.229 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccchhhhhhh-hhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhc
Q 026238 83 WYLLLGFVDVQGNFLVNKAYQFSSITSVTLL-DCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVL 152 (241)
Q Consensus 83 ~~l~~~~~~~~~~~~~~~al~~~~~~~a~~l-~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li~ 152 (241)
.+++.=.+.-.++.+|+.-+++++.+.++.+ +++.-.++++.+..+-.|-..++.++|..+.+.|+.+.+
T Consensus 54 ~Y~iPFllNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lci 124 (125)
T KOG4831|consen 54 EYLIPFLLNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLCI 124 (125)
T ss_pred HHHHHHHHHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhee
Confidence 3444444555568889999999999999955 566777788888876666677788999999999988754
No 94
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=88.18 E-value=17 Score=31.81 Aligned_cols=138 Identities=15% Similarity=0.099 Sum_probs=86.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHh-hhhhh-hh----HHHHHHHHH
Q 026238 16 TLRTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYR-RQRLR-VA----WYWYLLLGF 89 (241)
Q Consensus 16 ~~~~~~g~~l~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~i~l~~~~~~~-~~~~~-~~----~~~~l~~~~ 89 (241)
+.+.+.|+......++..+..++...++.+.+..+-+.....-+.++.++.+.-+..+ ..+.. .. +-+..+.-+
T Consensus 178 ~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s~~vw~vV 257 (345)
T KOG2234|consen 178 AQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYSSIVWLVV 257 (345)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccccHHHHHHH
Confidence 4567788887777777777777777777766666666666444555555544444322 21111 11 112222222
Q ss_pred HHHHH-HHHHHHHhhccchhhhhhhhhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhcc
Q 026238 90 VDVQG-NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLL 153 (241)
Q Consensus 90 ~~~~~-~~~~~~al~~~~~~~a~~l~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li~~ 153 (241)
+.... -.+.-.-.+|.+--.=..-.....+++.+.+..+++.+|+....+|+.+.+..+.+-..
T Consensus 258 l~~a~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~ 322 (345)
T KOG2234|consen 258 LLNAVGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSL 322 (345)
T ss_pred HHHhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhc
Confidence 22222 33444455666554444555567788899999999999999999999999998888763
No 95
>COG2510 Predicted membrane protein [Function unknown]
Probab=88.02 E-value=2.8 Score=31.28 Aligned_cols=47 Identities=9% Similarity=0.053 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH
Q 026238 169 GDVLVIAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQL 215 (241)
Q Consensus 169 G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 215 (241)
..+++++|++.+++..++.|--.++.||...+.....+..+.+.+..
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~ 50 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVL 50 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999988889999999998888887776333
No 96
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=85.16 E-value=5.9 Score=32.61 Aligned_cols=107 Identities=8% Similarity=0.045 Sum_probs=75.1
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHH--hhhh------hhhh-HHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhhch
Q 026238 47 GVDAPVTQSAFAYFSLALVYGGVLLY--RRQR------LRVA-WYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCT 117 (241)
Q Consensus 47 ~~~~p~~~~~~R~~~a~i~l~~~~~~--~~~~------~~~~-~~~~l~~~~~~~~~~~~~~~al~~~~~~~a~~l~~~~ 117 (241)
....-+...++.-+++..+++.+-.. +|.+ ++.+ .-++.+.|++.+...++--+.++-++...-+.+-.+.
T Consensus 181 tNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~svgiSy~saWcvrVtSSTtySMvGALN 260 (309)
T COG5070 181 TNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALN 260 (309)
T ss_pred cccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhh
Confidence 33444666677777777766555332 2222 1222 3456677777777788888888888888888887777
Q ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhcc
Q 026238 118 IAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLL 153 (241)
Q Consensus 118 Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li~~ 153 (241)
-.-.++.+.++++|+.+...+.++++++...++...
T Consensus 261 Klp~alaGlvffdap~nf~si~sillGflsg~iYav 296 (309)
T COG5070 261 KLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAV 296 (309)
T ss_pred hChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHH
Confidence 777788888889999888888888888877665544
No 97
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=78.59 E-value=42 Score=28.80 Aligned_cols=136 Identities=16% Similarity=0.103 Sum_probs=86.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHH----h-hhhh-------hhhH---
Q 026238 17 LRTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLY----R-RQRL-------RVAW--- 81 (241)
Q Consensus 17 ~~~~~g~~l~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~i~l~~~~~~----~-~~~~-------~~~~--- 81 (241)
+....|-.+-++.-+.-+.-.+.-.+..+...++|...+.+.-.++.+++..+... . .++. ..++
T Consensus 172 s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~ 251 (372)
T KOG3912|consen 172 SSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDA 251 (372)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHH
Confidence 34556766666666667766666655555568899999988888775555444331 1 1010 1111
Q ss_pred ---------HHHHHHHHHHHHH--HHHHHHHhhccchhhhhhhhhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHh
Q 026238 82 ---------YWYLLLGFVDVQG--NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGL 150 (241)
Q Consensus 82 ---------~~~l~~~~~~~~~--~~~~~~al~~~~~~~a~~l~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~l 150 (241)
......|.....+ |..-..-.++.++++=.++-..-..+.=+++.....|+.+.-|..|.++-+.|+++
T Consensus 252 ~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~l 331 (372)
T KOG3912|consen 252 FAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIIL 331 (372)
T ss_pred HHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122222221111 22233334667788888888887777778888889999999999999999999887
Q ss_pred hc
Q 026238 151 VL 152 (241)
Q Consensus 151 i~ 152 (241)
.-
T Consensus 332 Y~ 333 (372)
T KOG3912|consen 332 YN 333 (372)
T ss_pred HH
Confidence 63
No 98
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=76.89 E-value=5.4 Score=33.49 Aligned_cols=60 Identities=7% Similarity=0.035 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----CCC--hHHHHHHH----HHHHHHHHHHHHHHhhhhh
Q 026238 18 RTLYLLFLGQLVSFTLALMSFTSSLIADLG----VDA--PVTQSAFA----YFSLALVYGGVLLYRRQRL 77 (241)
Q Consensus 18 ~~~~g~~l~~~~a~~~~~~~~~~~~l~~~~----~~~--p~~~~~~R----~~~a~i~l~~~~~~~~~~~ 77 (241)
+++.|+.+++++.++++.+.+...++.+++ ..+ +..-++.- ++...+.++..+..+|.++
T Consensus 180 ~RivG~~LAv~aGvlyGs~fvPv~Yi~~~~~~y~~as~~~ldYvFs~f~GIfltSt~~F~~Y~~~~rn~P 249 (254)
T PF07857_consen 180 KRIVGIILAVFAGVLYGSNFVPVIYIQDHPDIYPGASQNGLDYVFSHFSGIFLTSTVYFVIYCIIKRNKP 249 (254)
T ss_pred chhHhHHHHHHHHHHHhcccchHHHHHhCccccCCCCCcchheeHHHHhhHHHHHHHHHHHHHHhhcCCC
Confidence 688999999999999999999999988654 222 22223222 2445555665665555443
No 99
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=74.06 E-value=4.4 Score=29.02 Aligned_cols=32 Identities=9% Similarity=0.031 Sum_probs=25.8
Q ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHhHhh
Q 026238 120 WAIVLTWLFLGTRYSLWQLLGAALCVLGLGLV 151 (241)
Q Consensus 120 ~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li 151 (241)
.-+.++.+++||++++.+..|.++.+.++..+
T Consensus 75 vF~~Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 75 VFAPFSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred eeHHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 34567888999999999999999887766543
No 100
>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]
Probab=72.74 E-value=22 Score=27.64 Aligned_cols=80 Identities=21% Similarity=0.204 Sum_probs=53.4
Q ss_pred HHHHhcccchHHHHHHHHH-------HHHHhHhhcccCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhcc----
Q 026238 125 TWLFLGTRYSLWQLLGAAL-------CVLGLGLVLLSDAGGDGGGGSRPLLGDVLVIAGTIFFATSNVGEEFFVKK---- 193 (241)
Q Consensus 125 ~~~~l~ek~~~~~~~g~~l-------~~~Gv~li~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~---- 193 (241)
..+..|..|+.++.+|+.+ ++.|+.++...+ +.+.......++.++++|++..++.....++
T Consensus 89 Em~v~KtsP~LYr~LGIfLPLITTNCaVLgvaLln~~~-------~~~f~qsv~~gf~a~lGfslvmvlfA~iRER~~~a 161 (193)
T COG4657 89 EMVVRKTSPTLYRLLGIFLPLITTNCAVLGVALLNINE-------GHNFLQSVVYGFGAALGFSLVMVLFAAIRERLALA 161 (193)
T ss_pred HHHHHccCHHHHHHHHHhhhhHhhchHHHHHHHHHhhh-------hhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHh
Confidence 3455677777788877764 567888876544 3456678899999999999998876654332
Q ss_pred -CC-hHHHHHHHHHHHHHHH
Q 026238 194 -KD-RVEVVCMIGVYGLLVS 211 (241)
Q Consensus 194 -~~-~~~~~~~~~~~~~~~~ 211 (241)
.| |.....+....+++..
T Consensus 162 dvP~~frG~~ialitagLmS 181 (193)
T COG4657 162 DVPAPFRGAAIALITAGLMS 181 (193)
T ss_pred cCCCCCCCcchHHHHHHHHH
Confidence 22 4455555555555555
No 101
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.97 E-value=14 Score=26.13 Aligned_cols=31 Identities=10% Similarity=0.120 Sum_probs=26.3
Q ss_pred HHHHHHHhcccchHHHHHHHHHHHHHhHhhc
Q 026238 122 IVLTWLFLGTRYSLWQLLGAALCVLGLGLVL 152 (241)
Q Consensus 122 ~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li~ 152 (241)
..++.+.+||++++..+.+..+...|+.++.
T Consensus 84 v~Fsvfyl~epl~~~~l~a~~~i~gav~fiF 114 (116)
T COG3169 84 VPFSVFYLKEPLRWNYLWAFLLILGAVYFIF 114 (116)
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHHhc
Confidence 4578899999999999999998888877654
No 102
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=65.00 E-value=98 Score=27.21 Aligned_cols=139 Identities=15% Similarity=0.068 Sum_probs=74.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHH---HH---hhcCCCChHHHHHHHH----HHHHHHHHHHHHHh--hhhh---
Q 026238 13 SHVTLRTLYLLFLGQLVSFTLALMSFTSS---LI---ADLGVDAPVTQSAFAY----FSLALVYGGVLLYR--RQRL--- 77 (241)
Q Consensus 13 ~~~~~~~~~g~~l~~~~a~~~~~~~~~~~---~l---~~~~~~~p~~~~~~R~----~~a~i~l~~~~~~~--~~~~--- 77 (241)
+.||.++.||+.+++++.++.++.++--. .+ +.....+|...+.--+ .-+++.=+..|.++ +++.
T Consensus 165 ~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ag~pi~~~a~a~G~~~l~~~l~~~vvv~~GGf~tN~~yc~~~l~~~k~~s~ 244 (344)
T PF06379_consen 165 EAKEFNFKKGLIIAVLSGVMSACFNFGLDAGKPIHEAAVAAGVNPLYANLPVYVVVLWGGFITNLIYCLILLAKNKNWSW 244 (344)
T ss_pred chhhhhhhhhHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHcCCCcHHHhCchhhhhhhhHHHHHHHHHHHHHhhcCCCcc
Confidence 34677888999999999999998876432 22 2223455665543222 23344444455432 1111
Q ss_pred -------hhh-HHHHHHHHHHHHHH---HHHHHHHhhccch----hhhhhhhhchHHHHHHHHHHHhcc------cchHH
Q 026238 78 -------RVA-WYWYLLLGFVDVQG---NFLVNKAYQFSSI----TSVTLLDCCTIAWAIVLTWLFLGT------RYSLW 136 (241)
Q Consensus 78 -------~~~-~~~~l~~~~~~~~~---~~~~~~al~~~~~----~~a~~l~~~~Pv~~~l~~~~~l~e------k~~~~ 136 (241)
+.+ .+.++...+.+..- ..+|-.+-...+. ..=.+.+.+..++.-+.+.+ +|| |+.+-
T Consensus 245 ~~d~~~~~~~~~~N~~~~aLaG~lWy~qfffYg~G~s~lg~~~~~~sW~i~ma~~vl~snvwGl~-lkEWKg~s~kt~~v 323 (344)
T PF06379_consen 245 KGDYSVAKPPLLKNYLFCALAGVLWYSQFFFYGMGESKLGASGPFSSWAIHMALIVLFSNVWGLI-LKEWKGASKKTIRV 323 (344)
T ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHH-HHHhccCCcccHHH
Confidence 111 24454544444443 2233344444442 33346666666666666655 443 45555
Q ss_pred HHHHHHHHHHHhHhhc
Q 026238 137 QLLGAALCVLGLGLVL 152 (241)
Q Consensus 137 ~~~g~~l~~~Gv~li~ 152 (241)
-+.|+.+.+.++.++-
T Consensus 324 l~~G~~vlI~s~~ivG 339 (344)
T PF06379_consen 324 LVLGIAVLILSVVIVG 339 (344)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 6677776666655543
No 103
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=64.88 E-value=45 Score=25.09 Aligned_cols=52 Identities=12% Similarity=-0.028 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCC-hHHHHHHHHHHHHHHHHHHHHHhhh
Q 026238 169 GDVLVIAGTIFFATSNVGEEFFVKKKD-RVEVVCMIGVYGLLVSAVQLSILEL 220 (241)
Q Consensus 169 G~~l~l~a~~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~ 220 (241)
..++++.++..-+++...+.+..++.+ |..-.......|.+.+.+.....++
T Consensus 2 ~~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~ 54 (138)
T PF04657_consen 2 YILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGR 54 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 357889999999999999999877765 8888888888888888655555544
No 104
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=62.77 E-value=93 Score=26.16 Aligned_cols=162 Identities=12% Similarity=0.073 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 026238 26 GQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQRLRVAWYWYLLLGFVDVQGNFLVNKAYQFS 105 (241)
Q Consensus 26 ~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~i~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~ 105 (241)
+.++++++++..+..|... ..|++...+.......+.-......+..+ + -....++.|.+-..+|.+-.-.++..
T Consensus 5 ~~va~~~fGs~~vPvK~~~---~gDg~~fQw~~~~~i~~~g~~v~~~~~~p-~-f~p~amlgG~lW~~gN~~~vpii~~i 79 (254)
T PF07857_consen 5 CIVAVLFFGSNFVPVKKFD---TGDGFFFQWVMCSGIFLVGLVVNLILGFP-P-FYPWAMLGGALWATGNILVVPIIKTI 79 (254)
T ss_pred HHHHHHHhcccceeeEecc---CCCcHHHHHHHHHHHHHHHHHHHHhcCCC-c-ceeHHHhhhhhhhcCceeehhHhhhh
Confidence 3445555666555555433 33556665444433333222222222211 1 12234455666666688888999999
Q ss_pred chhhhhhhhhchHHH-HHHHHHH-Hhcc---cc--hHHHHHHHHHHHHHhHhhcccCC-C-------C------------
Q 026238 106 SITSVTLLDCCTIAW-AIVLTWL-FLGT---RY--SLWQLLGAALCVLGLGLVLLSDA-G-------G------------ 158 (241)
Q Consensus 106 ~~~~a~~l~~~~Pv~-~~l~~~~-~l~e---k~--~~~~~~g~~l~~~Gv~li~~~~~-~-------~------------ 158 (241)
..+....+-.+.-+. --..+.+ ++++ .+ ++...+|++++++|..+...-+. . +
T Consensus 80 GLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~~~~~~~~~~~~~~~~~~~~~ 159 (254)
T PF07857_consen 80 GLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEEKEPKKSSEETPLSIEDVIEI 159 (254)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCCCCcccccccccccccccccc
Confidence 999888775553333 3333332 3332 22 34578899999999887653211 0 0
Q ss_pred -CC-----CC---C-----CcchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 026238 159 -DG-----GG---G-----SRPLLGDVLVIAGTIFFATSNVGEEFFVK 192 (241)
Q Consensus 159 -~~-----~~---~-----~~~~~G~~l~l~a~~~~a~~~v~~~~~~~ 192 (241)
.+ +. + .+...|..+++.+++.|+...+=..+..+
T Consensus 160 ~~~~~~~~~~S~vd~l~~~~~RivG~~LAv~aGvlyGs~fvPv~Yi~~ 207 (254)
T PF07857_consen 160 EDDSENSEDSSWVDELSPRKKRIVGIILAVFAGVLYGSNFVPVIYIQD 207 (254)
T ss_pred ccccccccccccccccccccchhHhHHHHHHHHHHHhcccchHHHHHh
Confidence 00 00 0 03567999999999999998766666533
No 105
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=62.68 E-value=32 Score=29.57 Aligned_cols=61 Identities=20% Similarity=0.215 Sum_probs=43.6
Q ss_pred HHHHHHHhhccchhhhhhh-hhchHHHHHHHHHHHhccc--chHH----HHHHHHHHHHHhHhhcccC
Q 026238 95 NFLVNKAYQFSSITSVTLL-DCCTIAWAIVLTWLFLGTR--YSLW----QLLGAALCVLGLGLVLLSD 155 (241)
Q Consensus 95 ~~~~~~al~~~~~~~a~~l-~~~~Pv~~~l~~~~~l~ek--~~~~----~~~g~~l~~~Gv~li~~~~ 155 (241)
..+.+.|+++-+++....+ +...-..+.+-+.++++|- .+.. ...|..+.+.|+.++...+
T Consensus 227 ~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~~~ 294 (300)
T PF05653_consen 227 LYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSSSK 294 (300)
T ss_pred HHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeeccC
Confidence 5567789999999888855 5556666777788888864 4443 3566777788888887544
No 106
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=61.85 E-value=86 Score=25.48 Aligned_cols=138 Identities=14% Similarity=0.195 Sum_probs=73.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh-hc--CCCChHHHHHHHHHHHHHHHHHHHH--Hhhhhhhh-----hHHHHHH
Q 026238 17 LRTLYLLFLGQLVSFTLALMSFTSSLIA-DL--GVDAPVTQSAFAYFSLALVYGGVLL--YRRQRLRV-----AWYWYLL 86 (241)
Q Consensus 17 ~~~~~g~~l~~~~a~~~~~~~~~~~~l~-~~--~~~~p~~~~~~R~~~a~i~l~~~~~--~~~~~~~~-----~~~~~l~ 86 (241)
++-+.|+.-++..++..+..-+..|..- +. |+. +-.++...+.=-++.-.|-+. ..+....+ +|.-+..
T Consensus 131 a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gda-a~FmS~LGF~NL~~~~~~~lIL~~T~VE~~qsFA~~PWG~l~G 209 (290)
T KOG4314|consen 131 ADEIIGIACAVGSAFMAALYKVLFKMFIGNANFGDA-AHFMSCLGFFNLCFISFPALILAFTGVEHLQSFAAAPWGCLCG 209 (290)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhccCcchhH-HHHHHHHHHHHHHHHhhhHHHHHHhchHHHHHHhhCCchhhhh
Confidence 3556777777777776666655555443 11 222 233343333322222222222 22211111 2333322
Q ss_pred HHHHHHHHHHHHHHHhhccchhhhhhhhhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhcccC
Q 026238 87 LGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (241)
Q Consensus 87 ~~~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li~~~~ 155 (241)
.+.+....+.+...++..+.+-..++=+-....-.+....++.+-..+.-...+.++..+|-+++..|+
T Consensus 210 ~A~L~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~ 278 (290)
T KOG4314|consen 210 AAGLSLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIPE 278 (290)
T ss_pred HHHHHHHHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheeccc
Confidence 233333336666666666666555544333333445556666666677888999999999999998887
No 107
>PF09930 DUF2162: Predicted transporter (DUF2162); InterPro: IPR017199 This group represents a predicted membrane transporter, MTH672 type.
Probab=61.32 E-value=92 Score=25.65 Aligned_cols=49 Identities=18% Similarity=0.093 Sum_probs=35.4
Q ss_pred chhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHH
Q 026238 7 INSWWRSHVTLRTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQS 55 (241)
Q Consensus 7 ~~~~~~~~~~~~~~~g~~l~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~ 55 (241)
+.+|+++.||..+..-+.+..=|..|.++..+..-.+++.-..++..+.
T Consensus 86 i~~W~~~~~~~s~~t~lal~~PCPvCl~Ai~~S~~l~a~~~~~s~~~ig 134 (224)
T PF09930_consen 86 IKKWKKSGKDSSRRTFLALSLPCPVCLTAIFFSIMLLAPSIGLSGWEIG 134 (224)
T ss_pred HHHHcccCCCCcccchhhhhcCchHHHHHHHHHHHHHHHhcCchHHHHH
Confidence 3567777777667777777777888888888777777765556666654
No 108
>PRK15071 lipopolysaccharide ABC transporter permease; Provisional
Probab=54.91 E-value=49 Score=28.90 Aligned_cols=39 Identities=8% Similarity=0.025 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHH
Q 026238 22 LLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYF 60 (241)
Q Consensus 22 g~~l~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~ 60 (241)
++.++++.++.+.....+.+.+.+.+..||..-++.--+
T Consensus 304 ~i~~~i~~~~~y~~~~~~~~~lg~~g~l~P~laaw~P~i 342 (356)
T PRK15071 304 RVVTGISFGFVFYVSNEIFGPLSLVYGIPPIIGALLPSL 342 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHH
Confidence 344444444444444444444444455555444443333
No 109
>PF09656 PGPGW: Putative transmembrane protein (PGPGW); InterPro: IPR019099 This entry represents proteins that contain three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.
Probab=54.82 E-value=50 Score=20.57 Aligned_cols=44 Identities=23% Similarity=0.264 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhHhhcccCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 026238 136 WQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVLVIAGTIFFATSNVGEEFFV 191 (241)
Q Consensus 136 ~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~~~~~ 191 (241)
...+|..+.++|++++..|+ .|.+..+++-...|...-..|+..
T Consensus 4 v~v~G~~lv~~Gii~~~lPG------------pG~l~i~~GL~iLa~ef~wArr~l 47 (53)
T PF09656_consen 4 VGVLGWVLVVAGIIMLPLPG------------PGLLVIFLGLAILATEFPWARRLL 47 (53)
T ss_pred hhhHHHHHHHHHHHhhcCCC------------CcHHHHHHHHHHHHHhhHHHHHHH
Confidence 35678889999999988766 255666677777777777777653
No 110
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=41.20 E-value=2.8e+02 Score=25.26 Aligned_cols=58 Identities=14% Similarity=0.108 Sum_probs=40.3
Q ss_pred cchhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHH
Q 026238 6 PINSWWRSHVTLRTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLAL 64 (241)
Q Consensus 6 ~~~~~~~~~~~~~~~~g~~l~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~i 64 (241)
.+.+|+.|++++-+.-++.++.+=--..+..+..+.++..+ +.++..+...|-..+..
T Consensus 248 ~~~~w~~Y~~q~vflas~alalLY~TVLsf~~lmt~yl~~~-G~s~~~igi~R~~gav~ 305 (432)
T PF06963_consen 248 IIRGWRTYFRQPVFLASFALALLYFTVLSFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVF 305 (432)
T ss_pred HhccHHHHHhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHC-CCCHHHHHHHHHHHHHH
Confidence 35678888888877777777666333445566677777765 67788898899865543
No 111
>PRK10209 acid-resistance membrane protein; Provisional
Probab=39.75 E-value=1.9e+02 Score=22.91 Aligned_cols=17 Identities=35% Similarity=0.460 Sum_probs=13.0
Q ss_pred HHHHHHHHHhHhhcccC
Q 026238 139 LGAALCVLGLGLVLLSD 155 (241)
Q Consensus 139 ~g~~l~~~Gv~li~~~~ 155 (241)
.|++..+.|+.++..|.
T Consensus 85 ~Gil~ii~Gil~l~~P~ 101 (190)
T PRK10209 85 LGVAYLVLGYFFIRNPE 101 (190)
T ss_pred HHHHHHHHHHHHHHhHH
Confidence 57778888888887654
No 112
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=39.69 E-value=2e+02 Score=23.08 Aligned_cols=31 Identities=16% Similarity=0.337 Sum_probs=14.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhccchh
Q 026238 78 RVAWYWYLLLGFVDVQGNFLVNKAYQFSSIT 108 (241)
Q Consensus 78 ~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~ 108 (241)
|+.+++.+..+.......+..+...+..|+.
T Consensus 143 r~~~~k~~~~~~~~~~~w~~~~~~~~~lp~~ 173 (206)
T PF06570_consen 143 RPSWWKYILISVLAMVLWIVIFVLTSFLPPV 173 (206)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 3345555555554444433333344445544
No 113
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=39.35 E-value=2.4e+02 Score=23.98 Aligned_cols=71 Identities=13% Similarity=0.282 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHH---HhhccchhhhhhhhhchHHHHHHHHHHHhcccchHHHHH-HHHHHHHHhHhh
Q 026238 80 AWYWYLLLGFVDVQGNFLVNK---AYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLL-GAALCVLGLGLV 151 (241)
Q Consensus 80 ~~~~~l~~~~~~~~~~~~~~~---al~~~~~~~a~~l~~~~Pv~~~l~~~~~l~ek~~~~~~~-g~~l~~~Gv~li 151 (241)
+.+.++..|..+....++|.. -++|.+-++........|+.+.... .......++..++ ++..++.-..++
T Consensus 107 ~~~~~l~lg~~~~~~~~~Yt~gP~~l~y~gLGE~~v~i~~G~l~v~g~~-yvq~~~~~~~~ll~sl~~g~l~~~il 181 (284)
T TIGR00751 107 DLFWFIALGALCIAAAITYTVGSKPYGYAGLGDISVLVFFGPLAVLGTQ-YLQAHRVDWVGILPAVATGLLACAVL 181 (284)
T ss_pred hhHHHHHHHHHHHHHhHhhcCCCCccccCchHHHHHHHHHHHHHHHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 344566777776666666653 6788999999999988888876544 3455566666544 443444333333
No 114
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=38.37 E-value=60 Score=24.78 Aligned_cols=26 Identities=15% Similarity=0.050 Sum_probs=19.4
Q ss_pred hccchhhhhhhhhchHHHHHHHHHHH
Q 026238 103 QFSSITSVTLLDCCTIAWAIVLTWLF 128 (241)
Q Consensus 103 ~~~~~~~a~~l~~~~Pv~~~l~~~~~ 128 (241)
.--+.-.++++.|..|++.++++.+.
T Consensus 70 ~EkslL~sA~LvYi~PL~~l~v~~~L 95 (150)
T COG3086 70 EEKSLLKSALLVYIFPLVGLFLGAIL 95 (150)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455677888999999988887664
No 115
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=38.11 E-value=49 Score=25.46 Aligned_cols=24 Identities=21% Similarity=0.097 Sum_probs=17.5
Q ss_pred cchhhhhhhhhchHHHHHHHHHHH
Q 026238 105 SSITSVTLLDCCTIAWAIVLTWLF 128 (241)
Q Consensus 105 ~~~~~a~~l~~~~Pv~~~l~~~~~ 128 (241)
.+.-.++.+.|..|++.++.+..+
T Consensus 72 ~~llkaa~lvYllPLl~li~ga~l 95 (154)
T PRK10862 72 GSLLRSALLVYMTPLVGLFLGAAL 95 (154)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567888899999988776553
No 116
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=37.95 E-value=97 Score=19.04 Aligned_cols=31 Identities=10% Similarity=0.379 Sum_probs=20.4
Q ss_pred hhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026238 9 SWWRSHVTLRTLYLLFLGQLVSFTLALMSFTSS 41 (241)
Q Consensus 9 ~~~~~~~~~~~~~g~~l~~~~a~~~~~~~~~~~ 41 (241)
++|++ ++.+..|.+.|.+.++++-..++.-.
T Consensus 2 e~~~~--~~~~iiG~~~G~ila~l~l~~GF~~t 32 (51)
T PF10031_consen 2 EFWKN--HRGKIIGGLIGLILALLILTFGFWKT 32 (51)
T ss_pred hHHHH--CcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666 45667777888877776666665443
No 117
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=37.55 E-value=51 Score=24.49 Aligned_cols=42 Identities=17% Similarity=0.062 Sum_probs=25.5
Q ss_pred chhhhhhhhhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHh
Q 026238 106 SITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGL 148 (241)
Q Consensus 106 ~~~~a~~l~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv 148 (241)
+.-.++++.|..|+..++.+.++. ..+...+..+++.+++|.
T Consensus 66 ~~~~aa~l~Y~lPll~li~g~~l~-~~~~~~e~~~~l~~l~~l 107 (135)
T PF04246_consen 66 SLLKAAFLVYLLPLLALIAGAVLG-SYLGGSELWAILGGLLGL 107 (135)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 445678889999999888776543 333333444444444443
No 118
>PF01654 Bac_Ubq_Cox: Bacterial Cytochrome Ubiquinol Oxidase; InterPro: IPR002585 These proteins are cytochrome bd type terminal oxidases that catalyse quinol dependent, Na+ independent oxygen uptake []. Members of this family are integral membrane proteins and contain a protoheame IX centre B558. Cytochrome bd may play an important role in microaerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae, where it is expressed under all conditions that permit diazotrophy []. Subunit I binds a single b-haem, through ligands at His186 and Met393 (using P0ABJ9 from SWISSPROT numbering). In addition His19 is a ligand for the haem b found in subunit II (IPR003317 from INTERPRO).; GO: 0016020 membrane
Probab=36.49 E-value=3.4e+02 Score=24.81 Aligned_cols=38 Identities=18% Similarity=0.175 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHH
Q 026238 168 LGDVLVIAGTIFFATSNVGEEFFVKKKDRVEVVCMIGV 205 (241)
Q Consensus 168 ~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~ 205 (241)
.|...++++.+.-...-=...+...++.|..+.+....
T Consensus 216 ~~~~~~~i~~~~~~~~G~~~g~~v~~~QP~K~AA~Eg~ 253 (436)
T PF01654_consen 216 IGLVIGLIAAILQPFSGDWQGREVAEYQPMKLAAMEGL 253 (436)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHhCChHHHhhhcc
Confidence 45555555555544443333344445667666665443
No 119
>CHL00196 psbY photosystem II protein Y; Provisional
Probab=35.42 E-value=54 Score=18.63 Aligned_cols=22 Identities=18% Similarity=0.064 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 026238 168 LGDVLVIAGTIFFATSNVGEEF 189 (241)
Q Consensus 168 ~G~~l~l~a~~~~a~~~v~~~~ 189 (241)
.=+++.++.+.+||+|++...-
T Consensus 6 liVl~Pil~A~~Wa~fNIg~~A 27 (36)
T CHL00196 6 LVIAAPVLAAASWALFNIGRLA 27 (36)
T ss_pred HHHHHHHHHHHHHHHHHhHHHH
Confidence 4467888999999999976543
No 120
>COG0670 Integral membrane protein, interacts with FtsH [General function prediction only]
Probab=34.42 E-value=2.7e+02 Score=23.05 Aligned_cols=27 Identities=15% Similarity=0.196 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 026238 167 LLGDVLVIAGTIFFATSNVGEEFFVKK 193 (241)
Q Consensus 167 ~~G~~l~l~a~~~~a~~~v~~~~~~~~ 193 (241)
........++.+.|+.+..+.....++
T Consensus 170 ~l~~~IS~lgvlifsgli~yDtq~I~~ 196 (233)
T COG0670 170 ALHLAISVLGVLIFSGLIAYDTQNIKR 196 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888999999999888876555
No 121
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.11 E-value=2.4e+02 Score=21.72 Aligned_cols=52 Identities=10% Similarity=0.006 Sum_probs=39.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHHHHHHHHh
Q 026238 167 LLGDVLVIAGTIFFATSNVGEEFFVKKK-DRVEVVCMIGVYGLLVSAVQLSIL 218 (241)
Q Consensus 167 ~~G~~l~l~a~~~~a~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~ 218 (241)
....+.++.++.+-..+.-++.+..+.. +|..........|++++.+...+.
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~ 56 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIK 56 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567888999999999998888886664 477777777888887776454443
No 122
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=31.55 E-value=3.6e+02 Score=23.62 Aligned_cols=19 Identities=11% Similarity=-0.153 Sum_probs=9.8
Q ss_pred cccchHHHHHHHHHHHHHh
Q 026238 130 GTRYSLWQLLGAALCVLGL 148 (241)
Q Consensus 130 ~ek~~~~~~~g~~l~~~Gv 148 (241)
.||..+++..-....+.++
T Consensus 79 ~Dr~grr~~~~~~~~~~~~ 97 (394)
T PRK10213 79 IQATDRRYVVILFAVLLTL 97 (394)
T ss_pred hcccCcHHHHHHHHHHHHH
Confidence 3666666654444444333
No 123
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=28.84 E-value=3.1e+02 Score=22.06 Aligned_cols=45 Identities=13% Similarity=0.006 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhhchHHHHHHHHHH
Q 026238 80 AWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWL 127 (241)
Q Consensus 80 ~~~~~l~~~~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pv~~~l~~~~ 127 (241)
.+++.+..........++.+.+-.+.|++.-- .+.|+...+.+.+
T Consensus 160 ~~~K~~lv~~~sm~lWi~v~i~t~~lPtslN~---~L~pi~l~IiGav 204 (226)
T COG4858 160 GTWKYLLVAVLSMLLWIAVMIATVFLPTSLNP---QLPPIALTIIGAV 204 (226)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhCCCcCCc---CCchHHHHHHHHH
Confidence 35666565555555566666777777665332 2345554444443
No 124
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=26.18 E-value=1.9e+02 Score=21.06 Aligned_cols=24 Identities=8% Similarity=0.285 Sum_probs=20.2
Q ss_pred cccchHHHHHHHHHHHHHhHhhcc
Q 026238 130 GTRYSLWQLLGAALCVLGLGLVLL 153 (241)
Q Consensus 130 ~ek~~~~~~~g~~l~~~Gv~li~~ 153 (241)
+.|+++.+-.|..+.++|.+++..
T Consensus 5 ~~KiN~~R~~al~lif~g~~vmy~ 28 (114)
T PF11023_consen 5 SSKINKIRTFALSLIFIGMIVMYI 28 (114)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhh
Confidence 457889999999999999888764
No 125
>PRK13240 pbsY photosystem II protein Y; Reviewed
Probab=26.13 E-value=91 Score=18.19 Aligned_cols=22 Identities=23% Similarity=0.137 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 026238 168 LGDVLVIAGTIFFATSNVGEEF 189 (241)
Q Consensus 168 ~G~~l~l~a~~~~a~~~v~~~~ 189 (241)
.=+++.++.+.+|++|++..--
T Consensus 6 liVl~Pil~A~~Wa~fNIg~~A 27 (40)
T PRK13240 6 LIVLAPILAAAGWAVFNIGKAA 27 (40)
T ss_pred HHHHHHHHHHHHHHHHHhhHHH
Confidence 3457788999999999976543
No 126
>PF06298 PsbY: Photosystem II protein Y (PsbY); InterPro: IPR009388 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbY found in PSII. In higher plants, two related PsbY proteins exist, PsbY-1 and PsbY-2, which appear to function as a heterodimer. In spinach and Arabidopsis, these two proteins arise from a single-copy nuclear gene that is processed in the chloroplast. By contrast, prokaryotic and organellar chromosomes encode a single PsbY protein, as found in cyanobacteria and red algae, indicating a duplication event in the evolution of higher plants []. PsbY has two low manganese-dependent activities: a catalase-like activity and an L-arginine metabolising activity that converts L-arginine into ornithine and urea []. In addition, a redox-active group is thought to be present in the protein. In cyanobacteria, PsbY deletion mutants have a slightly impaired PSII that is less capable of coping with low levels of calcium ions than the wild-type.; GO: 0030145 manganese ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0016021 integral to membrane
Probab=25.48 E-value=1.1e+02 Score=17.43 Aligned_cols=22 Identities=27% Similarity=0.152 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 026238 168 LGDVLVIAGTIFFATSNVGEEF 189 (241)
Q Consensus 168 ~G~~l~l~a~~~~a~~~v~~~~ 189 (241)
.=++..++.+.+|++|++..--
T Consensus 6 liVl~Pil~A~gWa~fNIg~~A 27 (36)
T PF06298_consen 6 LIVLLPILPAAGWALFNIGRAA 27 (36)
T ss_pred HHHHHHHHHHHHHHHHHhHHHH
Confidence 3457788899999999986544
No 127
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=25.43 E-value=6e+02 Score=24.30 Aligned_cols=21 Identities=14% Similarity=0.154 Sum_probs=11.2
Q ss_pred ccchHHHHHHHHHHHHHhHhh
Q 026238 131 TRYSLWQLLGAALCVLGLGLV 151 (241)
Q Consensus 131 ek~~~~~~~g~~l~~~Gv~li 151 (241)
++.++.-+.+..+..+++.++
T Consensus 377 r~~Kw~li~~~~~~ta~~Gam 397 (599)
T PF06609_consen 377 RHIKWQLIFGSVLMTAFCGAM 397 (599)
T ss_pred cchhHHHHHHHHHHHHHHHHH
Confidence 355555556666555544444
No 128
>TIGR02611 conserved hypothetical protein TIGR02611. Members of this family are Actinobacterial putative proteins of about 150 amino acids in length with three apparent transmembrane helix and an unusual motif with consensus sequence PGPGW.
Probab=24.95 E-value=2.9e+02 Score=20.43 Aligned_cols=41 Identities=15% Similarity=0.200 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhHhhcccCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 026238 137 QLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVLVIAGTIFFATSNVGEEF 189 (241)
Q Consensus 137 ~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~~~ 189 (241)
.++|.++.++|++++..|+ .|.+..+++-..+|.-....|+
T Consensus 29 ~v~G~~~~~~Gi~ml~lPG------------pG~l~i~iGl~iLatEf~WA~r 69 (121)
T TIGR02611 29 LVVGWVVLIVGIITIPLPG------------PGWLTIFIGLAILSLEFVWAQR 69 (121)
T ss_pred HHHHHHHHHHHHHHhccCC------------chHHHHHHHHHHHHHhhHHHHH
Confidence 4677888888888887776 3445555555555555554444
No 129
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=24.79 E-value=2.7e+02 Score=21.04 Aligned_cols=27 Identities=0% Similarity=-0.041 Sum_probs=23.1
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHH
Q 026238 164 SRPLLGDVLVIAGTIFFATSNVGEEFF 190 (241)
Q Consensus 164 ~~~~~G~~l~l~a~~~~a~~~v~~~~~ 190 (241)
.+...+.+..+.++..|--|...+||.
T Consensus 117 ~~~i~~l~~~li~a~IwipYf~~S~RV 143 (149)
T PF10754_consen 117 AEAIRELLRSLIAAAIWIPYFLRSKRV 143 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 345578899999999999999999986
No 130
>COG3965 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=23.39 E-value=4.7e+02 Score=22.31 Aligned_cols=112 Identities=15% Similarity=0.091 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhh--hhh-----hhhHHHHHHHHHHHHH
Q 026238 21 YLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRR--QRL-----RVAWYWYLLLGFVDVQ 93 (241)
Q Consensus 21 ~g~~l~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~i~l~~~~~~~~--~~~-----~~~~~~~l~~~~~~~~ 93 (241)
+|-+++.+| .++..+.+.+.+..-+.+.|-.-..+-.+....+.......+| ++. +.+-+..+..+.+...
T Consensus 96 ng~ll~ll~--lyAlinAl~~l~dGGR~v~~~~ai~yt~~s~~~Ca~~~~~~~r~nrr~~s~lIald~kqW~Mst~lS~a 173 (314)
T COG3965 96 NGTLLALLC--LYALINALGSLLDGGREVEPGHAIAYTLVSVTGCAAIAWKLRRLNRRLKSPLIALDTKQWLMSTCLSAA 173 (314)
T ss_pred ccHHHHHHH--HHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhhHHHHHHHHHHHHHH
Confidence 344444333 3444555556655333344444443444333333333332222 222 2235566666666655
Q ss_pred HHHHHHHHhhccchhhhhhhhhchHHHHHHHHHHHhcccch
Q 026238 94 GNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYS 134 (241)
Q Consensus 94 ~~~~~~~al~~~~~~~a~~l~~~~Pv~~~l~~~~~l~ek~~ 134 (241)
....|..|.-...-..+-+..|.-|.+.++...++..-++.
T Consensus 174 l~VaF~~a~~l~~T~~a~l~~Y~DPmvlaL~~~v~IplPlg 214 (314)
T COG3965 174 LFVAFAAAWLLAGTKFAHLVVYADPMVLALVCLVFIPLPLG 214 (314)
T ss_pred HHHHHHHHHHhccCchhhhhcccCHHHHHHHHHheeeccHH
Confidence 55555555555555566778899999999988887665543
No 131
>PRK15120 lipopolysaccharide ABC transporter permease LptF; Provisional
Probab=23.30 E-value=5.1e+02 Score=22.64 Aligned_cols=45 Identities=9% Similarity=0.002 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHH
Q 026238 21 YLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALV 65 (241)
Q Consensus 21 ~g~~l~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~i~ 65 (241)
.++..+++..+.+.......+.+.+.+..||..-.+.--++...+
T Consensus 297 ~~i~~~i~~~~~y~~l~~~~~~l~~~g~lpp~la~Wlp~i~~~~~ 341 (366)
T PRK15120 297 LSMLPAMLLYLIFFLLQTSLRSNGGKGKLDPMIWMWAVNLIYLAL 341 (366)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHH
Confidence 467777777776666666667777778888877666555444333
No 132
>PF03631 Virul_fac_BrkB: Virulence factor BrkB; InterPro: IPR017039 This entry represents the uncharacterised protein family UPF0761. It includes the E. coli gene product of yihY, and was previously thought to be a family of tRNA-processing ribonuclease BN proteins []. This has been shown to be incorrect [].; GO: 0004540 ribonuclease activity
Probab=22.65 E-value=4.3e+02 Score=21.64 Aligned_cols=14 Identities=7% Similarity=0.064 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHH
Q 026238 53 TQSAFAYFSLALVY 66 (241)
Q Consensus 53 ~~~~~R~~~a~i~l 66 (241)
.....|+.+..++.
T Consensus 160 ~~~~~~~~~~~~~~ 173 (260)
T PF03631_consen 160 LWNLIRWLVSFLLL 173 (260)
T ss_pred HHHHHHHHHHHHHH
Confidence 46677876554433
No 133
>KOG2322 consensus N-methyl-D-aspartate receptor glutamate-binding subunit [Signal transduction mechanisms]
Probab=22.23 E-value=4.3e+02 Score=21.95 Aligned_cols=35 Identities=17% Similarity=0.197 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH-hccCChHHHHH
Q 026238 167 LLGDVLVIAGTIFFATSNVGEEFF-VKKKDRVEVVC 201 (241)
Q Consensus 167 ~~G~~l~l~a~~~~a~~~v~~~~~-~~~~~~~~~~~ 201 (241)
..-.+.+..+++.+..|.++.-+. .++.+|-+.++
T Consensus 194 ~~~~vya~lgAllf~~yl~~Dtqllm~~~SPEEYI~ 229 (237)
T KOG2322|consen 194 ILVMVYAALGALLFCGYLVYDTQLLMGRISPEEYIF 229 (237)
T ss_pred HHHHHHHHHHHHHHhHHHHhhhHHHhccCCHHHHHH
Confidence 455677777777788887777665 34456655443
No 134
>PF04550 Phage_holin_2: Phage holin family 2 ; InterPro: IPR007633 This entry represents the Bacteriophage P2, GpY, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=22.14 E-value=2.8e+02 Score=19.25 Aligned_cols=53 Identities=17% Similarity=0.201 Sum_probs=29.9
Q ss_pred HhcccchHHHHHHHHHH------HHHhHhhcccCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 026238 128 FLGTRYSLWQLLGAALC------VLGLGLVLLSDAGGDGGGGSRPLLGDVLVIAGTIFFATSNVGEEFF 190 (241)
Q Consensus 128 ~l~ek~~~~~~~g~~l~------~~Gv~li~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~~~~ 190 (241)
--+|++++|.++|=.+. .+|++++..||- + .=.+.++.|++.-+-|..+....
T Consensus 25 ~s~Epit~RL~iGR~ilGs~~S~~Aga~Li~~Pdl------~----plAv~GlgsalGI~G~q~vE~~l 83 (89)
T PF04550_consen 25 ASNEPITLRLFIGRVILGSAVSVVAGAALIQFPDL------P----PLAVIGLGSALGIAGYQAVEAWL 83 (89)
T ss_pred ccCCCCchhHHhHHHHHhhHHHHHHHHHHhcCCCC------C----HHHHHHHHHHHHhhhHHHHHHHH
Confidence 34788888876654433 234444444441 2 23466667777666666655543
No 135
>PF14715 FixP_N: N-terminal domain of cytochrome oxidase-cbb3, FixP
Probab=22.10 E-value=1.6e+02 Score=18.06 Aligned_cols=11 Identities=27% Similarity=1.011 Sum_probs=9.5
Q ss_pred CCccchhhHhh
Q 026238 3 WNAPINSWWRS 13 (241)
Q Consensus 3 ~~~~~~~~~~~ 13 (241)
.|+|.|.||..
T Consensus 16 ~dnplP~ww~~ 26 (51)
T PF14715_consen 16 LDNPLPRWWLW 26 (51)
T ss_pred hcCCCCHHHHH
Confidence 58999999987
No 136
>PF08370 PDR_assoc: Plant PDR ABC transporter associated; InterPro: IPR013581 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This domain is found on the C terminus of ABC-2 type transporter domains (IPR013525 from INTERPRO). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents [] (see also IPR010929 from INTERPRO). The PDR family is characterised by a configuration in which the ABC domain is nearer the N terminus of the protein than the transmembrane domain [].
Probab=21.61 E-value=70 Score=20.81 Aligned_cols=29 Identities=21% Similarity=0.407 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHH--HHHHHHHhhccchh
Q 026238 80 AWYWYLLLGFVDVQG--NFLVNKAYQFSSIT 108 (241)
Q Consensus 80 ~~~~~l~~~~~~~~~--~~~~~~al~~~~~~ 108 (241)
.|.++-+.+++|+.. +.++..|++|.++-
T Consensus 27 ~WyWIgvgaL~G~~vlFNil~~laL~yL~p~ 57 (65)
T PF08370_consen 27 YWYWIGVGALLGFIVLFNILFTLALTYLNPL 57 (65)
T ss_pred cEEeehHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 366666666777776 88899999998653
No 137
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=20.73 E-value=3e+02 Score=20.04 Aligned_cols=11 Identities=9% Similarity=0.078 Sum_probs=6.5
Q ss_pred HHHHHHHHHHH
Q 026238 19 TLYLLFLGQLV 29 (241)
Q Consensus 19 ~~~g~~l~~~~ 29 (241)
.+|.+.++..+
T Consensus 40 pwK~I~la~~L 50 (115)
T PF05915_consen 40 PWKSIALAVFL 50 (115)
T ss_pred HHHHHHHHHHH
Confidence 46666666654
Done!