Query 026238
Match_columns 241
No_of_seqs 145 out of 1769
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 08:50:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026238.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026238hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.7 2.9E-07 9.9E-12 66.3 12.1 70 86-155 34-105 (110)
2 2i68_A Protein EMRE; transmemb 98.6 8.1E-08 2.8E-12 71.8 7.7 70 86-155 34-105 (137)
3 1loi_A Cyclic 3',5'-AMP specif 27.2 25 0.00085 17.0 1.0 10 7-16 16-25 (26)
4 1rh5_C Secbeta; protein transl 8.4 3E+02 0.01 16.2 2.7 23 130-152 25-47 (53)
5 2i68_A Protein EMRE; transmemb 7.9 5.9E+02 0.02 17.9 6.2 6 196-201 85-90 (137)
6 3o7q_A L-fucose-proton symport 7.2 9E+02 0.031 19.4 15.6 18 38-55 280-298 (438)
7 2ww9_C Protein transport prote 6.4 3.8E+02 0.013 17.6 2.6 22 131-152 57-78 (87)
8 3o79_A Rabbit PRP; prion, memb 5.1 2E+02 0.0067 19.3 0.6 12 1-12 14-25 (105)
9 2hac_A T-cell surface glycopro 4.8 2.9E+02 0.0099 14.6 1.0 16 120-135 15-30 (33)
10 3b9w_A Ammonium transporter fa 4.1 1.6E+03 0.056 18.9 12.4 148 61-213 151-313 (407)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.71 E-value=2.9e-07 Score=66.25 Aligned_cols=70 Identities=17% Similarity=0.282 Sum_probs=61.7
Q ss_pred HHHHHHHHH-HHHHHHHhhccchhhhhhh-hhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhcccC
Q 026238 86 LLGFVDVQG-NFLVNKAYQFSSITSVTLL-DCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (241)
Q Consensus 86 ~~~~~~~~~-~~~~~~al~~~~~~~a~~l-~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li~~~~ 155 (241)
+.+...... ..++..++++.|.+.+..+ ..+.|+.+++.+++++||++++.+++|+.+.++|++++...+
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 455555555 7888889999999999988 899999999999999999999999999999999999986544
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.65 E-value=8.1e-08 Score=71.78 Aligned_cols=70 Identities=17% Similarity=0.282 Sum_probs=51.1
Q ss_pred HHHHHHHHH-HHHHHHHhhccchhhhhhh-hhchHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhcccC
Q 026238 86 LLGFVDVQG-NFLVNKAYQFSSITSVTLL-DCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (241)
Q Consensus 86 ~~~~~~~~~-~~~~~~al~~~~~~~a~~l-~~~~Pv~~~l~~~~~l~ek~~~~~~~g~~l~~~Gv~li~~~~ 155 (241)
+.+++.... +.++..++++.|++.+..+ .++.|++++++++++++|++++.+++|++++++|++++...+
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 455555555 8889999999999999988 899999999999999999999999999999999999986543
No 3
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=27.19 E-value=25 Score=16.99 Aligned_cols=10 Identities=20% Similarity=0.909 Sum_probs=8.1
Q ss_pred chhhHhhhhh
Q 026238 7 INSWWRSHVT 16 (241)
Q Consensus 7 ~~~~~~~~~~ 16 (241)
..+||.++|.
T Consensus 16 lvgwwdqfkr 25 (26)
T 1loi_A 16 LVGWWDQFKR 25 (26)
T ss_dssp GGGGHHHHTC
T ss_pred hhhhHHHhcc
Confidence 5789999874
No 4
>1rh5_C Secbeta; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.29.1 PDB: 1rhz_C 2yxq_C 2yxr_C 3kcr_C 3dkn_C 3bo1_C 3bo0_C
Probab=8.45 E-value=3e+02 Score=16.17 Aligned_cols=23 Identities=13% Similarity=0.235 Sum_probs=17.6
Q ss_pred cccchHHHHHHHHHHHHHhHhhc
Q 026238 130 GTRYSLWQLLGAALCVLGLGLVL 152 (241)
Q Consensus 130 ~ek~~~~~~~g~~l~~~Gv~li~ 152 (241)
+-|+++..++++.++++..+.+.
T Consensus 25 giKi~P~~Vl~~si~~i~~V~~L 47 (53)
T 1rh5_C 25 KIRVKPEHVIGVTVAFVIIEAIL 47 (53)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCeehhhhHHHHHHHHHHH
Confidence 34788888999888887776654
No 5
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=7.92 E-value=5.9e+02 Score=17.87 Aligned_cols=6 Identities=0% Similarity=0.014 Sum_probs=1.5
Q ss_pred hHHHHH
Q 026238 196 RVEVVC 201 (241)
Q Consensus 196 ~~~~~~ 201 (241)
+....+
T Consensus 85 ~~~~~G 90 (137)
T 2i68_A 85 LPAIIG 90 (137)
T ss_dssp --CHHH
T ss_pred HHHHHH
Confidence 333333
No 6
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=7.23 E-value=9e+02 Score=19.40 Aligned_cols=18 Identities=0% Similarity=-0.020 Sum_probs=7.9
Q ss_pred HHHHH-HhhcCCCChHHHH
Q 026238 38 FTSSL-IADLGVDAPVTQS 55 (241)
Q Consensus 38 ~~~~~-l~~~~~~~p~~~~ 55 (241)
+...+ +.+.-..++....
T Consensus 280 ~~~~~~~~~~~g~~~~~~~ 298 (438)
T 3o7q_A 280 YLIRYAVEEIPGMTAGFAA 298 (438)
T ss_dssp HHHHHHHHHSTTCCHHHHH
T ss_pred HHHHHhhhccCCcchhHHH
Confidence 34445 4443244554443
No 7
>2ww9_C Protein transport protein SEB2; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_C
Probab=6.37 E-value=3.8e+02 Score=17.57 Aligned_cols=22 Identities=14% Similarity=-0.041 Sum_probs=15.3
Q ss_pred ccchHHHHHHHHHHHHHhHhhc
Q 026238 131 TRYSLWQLLGAALCVLGLGLVL 152 (241)
Q Consensus 131 ek~~~~~~~g~~l~~~Gv~li~ 152 (241)
-|+++..++.+.+++++.+++.
T Consensus 57 lKV~P~~VLv~sl~FIa~VilL 78 (87)
T 2ww9_C 57 FRVDSLVVLFLSVGFIFSVIAL 78 (87)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHC
T ss_pred eEEcCeeehhhHHHHHHHHHHH
Confidence 3567777777778888777664
No 8
>3o79_A Rabbit PRP; prion, membrane protein; 1.60A {Oryctolagus cuniculus} SCOP: d.6.1.1 PDB: 1y2s_A 1xyu_A 1xyw_A 1xyj_A 1uw3_A* 1dwy_A 1dwz_A 1xyk_A 1tqc_A 1tqb_A 1xyq_A 1y15_A 1xyx_A 1ag2_A 2w9e_A 4dgi_A 1qm2_A 1qm3_A 1y16_A 1e1g_A ...
Probab=5.09 E-value=2e+02 Score=19.34 Aligned_cols=12 Identities=0% Similarity=0.227 Sum_probs=8.0
Q ss_pred CCCCccchhhHh
Q 026238 1 MNWNAPINSWWR 12 (241)
Q Consensus 1 ~~~~~~~~~~~~ 12 (241)
|||.+|-+.+|-
T Consensus 14 ~hF~n~~E~Ryy 25 (105)
T 3o79_A 14 IHFGNDYEDRYY 25 (105)
T ss_dssp CCCSSHHHHHHH
T ss_pred cccCChHHHHHH
Confidence 577777776653
No 9
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=4.75 E-value=2.9e+02 Score=14.57 Aligned_cols=16 Identities=38% Similarity=0.739 Sum_probs=8.5
Q ss_pred HHHHHHHHHhcccchH
Q 026238 120 WAIVLTWLFLGTRYSL 135 (241)
Q Consensus 120 ~~~l~~~~~l~ek~~~ 135 (241)
.-+++..++.+||..+
T Consensus 15 Ygii~T~Ly~R~K~~~ 30 (33)
T 2hac_A 15 YGVILTALFLRVKFSR 30 (33)
T ss_dssp HHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhc
Confidence 3344555556666554
No 10
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=4.15 E-value=1.6e+03 Score=18.94 Aligned_cols=148 Identities=14% Similarity=0.002 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhh-----hhhhHHHHHHHHHHHHHH-HHHHHHHhhccchhhhhhhhhchHHHHHHHHHHHhcc--c
Q 026238 61 SLALVYGGVLLYRRQR-----LRVAWYWYLLLGFVDVQG-NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGT--R 132 (241)
Q Consensus 61 ~a~i~l~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~-~~~~~~al~~~~~~~a~~l~~~~Pv~~~l~~~~~l~e--k 132 (241)
.+++....++-+|+++ .+.+-..+..+|..-.-. ...++.++...+.+.-+.++...-.....+++.+..+ +
T Consensus 151 ~~aLa~a~~LG~R~~~~~~~~~~~hn~~~~~lGt~lLW~GWfGFN~Gl~~~~~~~~a~~NT~lAaaag~l~~~~~~~~~~ 230 (407)
T 3b9w_A 151 YFGLGVSIALTTAAQRAQPIESDATSDRFSMLGSMVLWLFWPSFATAIVPFEQMPQTIVNTLLALCGATLATYFLSALFH 230 (407)
T ss_dssp HHHHHHHHHHCCHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCccccCCCCcCCCCCHHHHHHHHHHHHHHHHhhhhhhccchhhHHHHHHhHHHHHHHHHHHHHHHHHHh
Q ss_pred chHHHHHHHHHHHHHhHhhcccCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHH-------HHhccCChHHHHHHHHH
Q 026238 133 YSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVLVIAGTIFFATSNVGEE-------FFVKKKDRVEVVCMIGV 205 (241)
Q Consensus 133 ~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~~-------~~~~~~~~~~~~~~~~~ 205 (241)
-.+....+++=+.+.-.+-+.+. ..-.+++...+.++++++..-....+.| |.-...+....=....+
T Consensus 231 ~gK~~~~~~~nG~LAGLVAITa~-----~~~v~p~~A~iIG~iaG~i~~~~~~~l~~~l~~~l~iDD~l~a~~vHgv~Gi 305 (407)
T 3b9w_A 231 KGKASIVDMANAALAGGVAIGSV-----CNIVGPVGAFVIGLLGGAISVVGFVFIQPMLESKAKTIDTCGVHNLHGLPGL 305 (407)
T ss_dssp TTCCCHHHHHHHTTHHHHHHTTT-----TTTSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHSCCCCTTCHHHHTTHHHH
T ss_pred CCCCCHHHHHHhhhhhhheeccC-----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCeecchHHHH
Q ss_pred HHHHHHHH
Q 026238 206 YGLLVSAV 213 (241)
Q Consensus 206 ~~~~~~~i 213 (241)
+|.+...+
T Consensus 306 ~G~l~~gl 313 (407)
T 3b9w_A 306 LGGFSAIL 313 (407)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Done!