Query 026238
Match_columns 241
No_of_seqs 145 out of 1769
Neff 8.9
Searched_HMMs 13730
Date Mon Mar 25 08:50:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026238.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026238hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 14.3 65 0.0047 14.6 2.1 19 168-186 3-21 (27)
2 d1q90a3 f.23.23.1 (A:248-292) 11.8 48 0.0035 17.5 1.3 31 166-196 4-34 (45)
3 d2r6gf1 e.70.1.1 (F:13-260) Ma 7.3 4E+02 0.029 19.1 7.3 21 119-139 36-56 (248)
4 d1u3ma_ d.6.1.1 (A:) Prion pro 5.6 80 0.0058 20.1 0.6 12 1-12 21-32 (117)
5 d2axtt1 f.23.34.1 (T:1-30) Pho 5.4 1.8E+02 0.013 13.2 3.6 22 200-221 4-25 (30)
6 d1xu0a_ d.6.1.1 (A:) Prion pro 4.7 1E+02 0.0075 19.1 0.6 11 1-11 15-25 (102)
7 d2axtl1 f.23.31.1 (L:1-37) Pho 3.6 3E+02 0.022 13.3 3.0 17 168-184 19-35 (37)
8 d1o82a_ a.64.2.1 (A:) Bacterio 3.5 1.9E+02 0.014 15.9 1.0 17 5-21 46-62 (70)
9 d1i4ma_ d.6.1.1 (A:) Prion pro 3.2 1.6E+02 0.012 18.4 0.6 11 1-11 21-31 (108)
10 d1vf5c3 f.23.23.1 (C:250-286) 3.1 3.5E+02 0.026 13.3 2.5 24 167-190 6-29 (37)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=14.26 E-value=65 Score=14.60 Aligned_cols=19 Identities=32% Similarity=0.475 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 026238 168 LGDVLVIAGTIFFATSNVG 186 (241)
Q Consensus 168 ~G~~l~l~a~~~~a~~~v~ 186 (241)
.|.+..-++++.||.|.-+
T Consensus 3 lgli~~tl~glf~aayqqy 21 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQQY 21 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred eeehHHHHHHHHHHHHHHh
Confidence 4677777788888887543
No 2
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=11.79 E-value=48 Score=17.48 Aligned_cols=31 Identities=10% Similarity=-0.021 Sum_probs=20.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhccCCh
Q 026238 166 PLLGDVLVIAGTIFFATSNVGEEFFVKKKDR 196 (241)
Q Consensus 166 ~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~ 196 (241)
...|.+..+++.+.--+..++-||-..+...
T Consensus 4 Rv~gll~F~~~v~laQi~LVLKKKQfEKVQ~ 34 (45)
T d1q90a3 4 RIQGLLVFFSFVLLTQVLLVLKKKQFEKVQL 34 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777777777777777777765544433
No 3
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=7.27 E-value=4e+02 Score=19.12 Aligned_cols=21 Identities=10% Similarity=0.319 Sum_probs=11.1
Q ss_pred HHHHHHHHHHhcccchHHHHH
Q 026238 119 AWAIVLTWLFLGTRYSLWQLL 139 (241)
Q Consensus 119 v~~~l~~~~~l~ek~~~~~~~ 139 (241)
+.+.+..++++.+|.-+.+++
T Consensus 36 ~~~~~~~~vy~s~r~~p~kyi 56 (248)
T d2r6gf1 36 ILSSAGLYIFANRKAYAWRYV 56 (248)
T ss_dssp HHHHHHHHHHSSSCCTTHHHH
T ss_pred HHHHheEEEEEccCccceehh
Confidence 344555566666665554443
No 4
>d1u3ma_ d.6.1.1 (A:) Prion protein domain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=5.64 E-value=80 Score=20.09 Aligned_cols=12 Identities=17% Similarity=0.557 Sum_probs=7.4
Q ss_pred CCCCccchhhHh
Q 026238 1 MNWNAPINSWWR 12 (241)
Q Consensus 1 ~~~~~~~~~~~~ 12 (241)
|||.+|-+.+|-
T Consensus 21 ~hF~n~~E~Ryy 32 (117)
T d1u3ma_ 21 YHFDRPDEYRWW 32 (117)
T ss_dssp CCCCSHHHHHHH
T ss_pred cccCChHHHHHH
Confidence 566666666553
No 5
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.38 E-value=1.8e+02 Score=13.24 Aligned_cols=22 Identities=5% Similarity=0.229 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc
Q 026238 200 VCMIGVYGLLVSAVQLSILELK 221 (241)
Q Consensus 200 ~~~~~~~~~~~~~i~~~~~~~~ 221 (241)
+.|...+++++.+..+.++.++
T Consensus 4 i~yv~ifac~i~lfffaiffre 25 (30)
T d2axtt1 4 ITYVFIFACIIALFFFAIFFRE 25 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSC
T ss_pred eehHHHHHHHHHHHHHHHHhcC
Confidence 4455556665554444455443
No 6
>d1xu0a_ d.6.1.1 (A:) Prion protein domain {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=4.68 E-value=1e+02 Score=19.06 Aligned_cols=11 Identities=27% Similarity=0.706 Sum_probs=5.9
Q ss_pred CCCCccchhhH
Q 026238 1 MNWNAPINSWW 11 (241)
Q Consensus 1 ~~~~~~~~~~~ 11 (241)
|||.+|-+.+|
T Consensus 15 ~hF~n~~E~Ry 25 (102)
T d1xu0a_ 15 YQFNNPMESRY 25 (102)
T ss_dssp CCCSSHHHHHH
T ss_pred cccCChHHHHH
Confidence 45555555544
No 7
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.62 E-value=3e+02 Score=13.34 Aligned_cols=17 Identities=24% Similarity=0.471 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHHHH
Q 026238 168 LGDVLVIAGTIFFATSN 184 (241)
Q Consensus 168 ~G~~l~l~a~~~~a~~~ 184 (241)
+|.++.+.-++.++.|.
T Consensus 19 ~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 19 LGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 68888888888887764
No 8
>d1o82a_ a.64.2.1 (A:) Bacteriocin AS-48 {Enterococcus faecalis [TaxId: 1351]}
Probab=3.45 E-value=1.9e+02 Score=15.93 Aligned_cols=17 Identities=12% Similarity=-0.371 Sum_probs=11.1
Q ss_pred ccchhhHhhhhhhHHHH
Q 026238 5 APINSWWRSHVTLRTLY 21 (241)
Q Consensus 5 ~~~~~~~~~~~~~~~~~ 21 (241)
+-++++++++|++..-+
T Consensus 46 ag~e~i~~~lkk~i~~k 62 (70)
T d1o82a_ 46 AGRESIKAYLKKEIKKK 62 (70)
T ss_dssp TTTSCHHHHHHHHHHHH
T ss_pred hcHHHHHHHHHHHHHHh
Confidence 34677888887764443
No 9
>d1i4ma_ d.6.1.1 (A:) Prion protein domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.18 E-value=1.6e+02 Score=18.42 Aligned_cols=11 Identities=0% Similarity=0.344 Sum_probs=6.2
Q ss_pred CCCCccchhhH
Q 026238 1 MNWNAPINSWW 11 (241)
Q Consensus 1 ~~~~~~~~~~~ 11 (241)
|||.+|-+++|
T Consensus 21 ~~F~np~E~ry 31 (108)
T d1i4ma_ 21 IHFGSDYEDRY 31 (108)
T ss_dssp CCCSSHHHHHH
T ss_pred cCCCChHHHHH
Confidence 45666665554
No 10
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=3.14 E-value=3.5e+02 Score=13.27 Aligned_cols=24 Identities=4% Similarity=-0.187 Sum_probs=12.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 026238 167 LLGDVLVIAGTIFFATSNVGEEFF 190 (241)
Q Consensus 167 ~~G~~l~l~a~~~~a~~~v~~~~~ 190 (241)
..|.+..+++...--+..++-||-
T Consensus 6 v~gl~~F~~~v~laQi~lVlKKKQ 29 (37)
T d1vf5c3 6 VKWMIAFICLVMLAQLMLILKKKQ 29 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555555543
Done!