Your job contains 1 sequence.
>026239
MGMAAAAAAAVAESQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHED
DGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPS
RISRCLEEGAEEFFLKPVRLSDLNKLKPHLMKTKIKDQIKQQSQQQQEEESDESDFQSPS
PPQQQPQESQQSQQQQQQQQQQQQQQQQQQQQSNNNKRKALEEGLSPERTRPRYNGIATV
V
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 026239
(241 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2080590 - symbol:ARR9 "response regulator 9" s... 584 1.6e-65 2
TAIR|locus:2040282 - symbol:RR3 "response regulator 3" sp... 579 2.6e-63 2
UNIPROTKB|Q4GZK2 - symbol:rr9 "Type A response regulator ... 566 4.2e-59 2
UNIPROTKB|Q4GZK7 - symbol:rr4 "Type A response regulator ... 553 1.9e-53 1
TAIR|locus:2194584 - symbol:ARR4 "response regulator 4" s... 421 2.0e-41 2
TAIR|locus:2097870 - symbol:RR5 "response regulator 5" sp... 426 5.3e-40 1
TAIR|locus:2102509 - symbol:RR17 "response regulator 17" ... 421 1.8e-39 1
TAIR|locus:2027237 - symbol:ARR15 "response regulator 15"... 420 2.3e-39 1
TAIR|locus:2011286 - symbol:ARR7 "response regulator 7" s... 419 2.9e-39 1
TAIR|locus:2025911 - symbol:ARR3 "response regulator 3" s... 415 7.8e-39 1
TAIR|locus:2170723 - symbol:ARR6 "response regulator 6" s... 408 4.3e-38 1
UNIPROTKB|Q4GZK8 - symbol:rr3 "Type A response regulator ... 265 6.4e-37 2
UNIPROTKB|Q4GZK5 - symbol:rr6 "Type A response regulator ... 385 1.2e-35 1
UNIPROTKB|Q4GZL0 - symbol:rr1 "Type A response regulator ... 309 1.3e-27 1
UNIPROTKB|Q4GZK9 - symbol:rr2 "Type A response regulator ... 301 9.4e-27 1
TAIR|locus:2054895 - symbol:AT2G07440 species:3702 "Arabi... 222 1.0e-25 2
UNIPROTKB|Q4GZK4 - symbol:rr7 "Type A response regulator ... 282 9.7e-25 1
UNIPROTKB|Q4GZK3 - symbol:rr8 "Type A response regulator ... 213 2.0e-17 1
TIGR_CMR|SO_3209 - symbol:SO_3209 "chemotaxis protein Che... 124 1.1e-12 2
UNIPROTKB|Q9WYT9 - symbol:TM_0468 "Response regulator" sp... 101 9.1e-12 2
UNIPROTKB|Q0C4H5 - symbol:cheY "Chemotaxis protein CheY" ... 104 2.5e-11 2
UNIPROTKB|Q9KQD5 - symbol:VC_2065 "Chemotaxis protein Che... 117 3.9e-11 2
TIGR_CMR|VC_2065 - symbol:VC_2065 "chemotaxis protein Che... 117 3.9e-11 2
TAIR|locus:2151206 - symbol:PRR7 "pseudo-response regulat... 164 4.7e-11 1
UNIPROTKB|Q9KKK8 - symbol:VC_A1096 "Chemotaxis protein Ch... 93 5.8e-11 2
TIGR_CMR|VC_A1096 - symbol:VC_A1096 "chemotaxis protein C... 93 5.8e-11 2
DICTYBASE|DDB_G0284331 - symbol:regA "response regulator ... 163 6.8e-11 1
TAIR|locus:2044376 - symbol:PRR9 "pseudo-response regulat... 159 7.9e-11 1
TIGR_CMR|GSU_2219 - symbol:GSU_2219 "response regulator" ... 106 3.6e-10 2
TIGR_CMR|GSU_1117 - symbol:GSU_1117 "response regulator" ... 98 4.9e-10 2
TIGR_CMR|CJE_1664 - symbol:CJE_1664 "DNA-binding response... 143 5.2e-10 1
UNIPROTKB|Q3ADB1 - symbol:cheY1 "Chemotaxis protein CheY"... 91 5.5e-10 2
TIGR_CMR|CHY_1026 - symbol:CHY_1026 "chemotaxis protein C... 91 5.5e-10 2
TIGR_CMR|GSU_1038 - symbol:GSU_1038 "sensory box histidin... 118 1.5e-09 2
TIGR_CMR|BA_0994 - symbol:BA_0994 "response regulator" sp... 139 7.9e-09 1
TIGR_CMR|GSU_1671 - symbol:GSU_1671 "response regulator/G... 102 8.2e-09 3
UNIPROTKB|P71403 - symbol:cheY "Chemotaxis protein CheY h... 130 1.2e-08 1
TIGR_CMR|SPO_3037 - symbol:SPO_3037 "DNA-binding response... 123 1.7e-08 2
UNIPROTKB|Q8EEQ6 - symbol:cheY "Chemotaxis signal transdu... 92 1.9e-08 2
TIGR_CMR|SO_2318 - symbol:SO_2318 "chemotaxis protein Che... 92 1.9e-08 2
UNIPROTKB|Q8EC92 - symbol:cheV "Chemotaxis signal transdu... 133 2.2e-08 1
TIGR_CMR|SO_3252 - symbol:SO_3252 "chemotaxis protein Che... 133 2.2e-08 1
TAIR|locus:2008585 - symbol:ARR11 "response regulator 11"... 137 2.3e-08 1
TIGR_CMR|GSU_2212 - symbol:GSU_2212 "chemotaxis protein C... 99 2.5e-08 2
UNIPROTKB|Q7D1A8 - symbol:cheY "Chemotaxis receiver prote... 92 3.0e-08 2
NCBI_NP|NP_353545.1 - symbol:cheY "chemotaxisreceiverprot... 92 3.0e-08 2
TIGR_CMR|GSU_1285 - symbol:GSU_1285 "sensory box sensor h... 138 3.1e-08 1
TIGR_CMR|CJE_1261 - symbol:CJE_1261 "chemotaxis protein C... 126 3.3e-08 1
UNIPROTKB|Q55169 - symbol:rcp1 "Response regulator rcp1" ... 126 3.3e-08 1
TIGR_CMR|CPS_1520 - symbol:CPS_1520 "chemotaxis protein C... 125 4.2e-08 1
TIGR_CMR|GSU_2535 - symbol:GSU_2535 "response regulator" ... 125 4.2e-08 1
TIGR_CMR|SPO_1023 - symbol:SPO_1023 "response regulator" ... 98 4.4e-08 2
UNIPROTKB|Q52879 - symbol:cheY1 "CheY1" species:382 "Sino... 91 5.0e-08 2
UNIPROTKB|Q747K4 - symbol:GSU3261 "Response regulator, pu... 122 8.7e-08 1
TIGR_CMR|GSU_3261 - symbol:GSU_3261 "response regulator" ... 122 8.7e-08 1
UNIPROTKB|Q7Y0W3 - symbol:Q7Y0W3 "Two-component response ... 114 1.3e-07 2
UNIPROTKB|Q7Y0W5 - symbol:EHD1 "Two-component response re... 114 1.3e-07 2
TIGR_CMR|BA_0996 - symbol:BA_0996 "sensor histidine kinas... 128 1.4e-07 2
UNIPROTKB|Q9KRI8 - symbol:VC_1653 "Sensory box sensor his... 133 1.7e-07 1
TIGR_CMR|VC_1653 - symbol:VC_1653 "sensory box sensor his... 133 1.7e-07 1
TIGR_CMR|APH_0551 - symbol:APH_0551 "response regulator/G... 113 1.8e-07 2
UNIPROTKB|Q48GG3 - symbol:cheY2 "Chemotaxis protein CheY"... 119 1.8e-07 1
UNIPROTKB|Q8EF67 - symbol:cheY "Chemotaxis signal transdu... 82 1.9e-07 2
TIGR_CMR|SO_2120 - symbol:SO_2120 "chemotaxis protein Che... 82 1.9e-07 2
TIGR_CMR|GSU_2693 - symbol:GSU_2693 "response regulator" ... 91 2.8e-07 2
UNIPROTKB|Q4KG39 - symbol:cheY "Chemotaxis protein CheY" ... 115 4.8e-07 1
TAIR|locus:2163198 - symbol:TOC1 "TIMING OF CAB EXPRESSIO... 129 8.4e-07 1
TIGR_CMR|GSU_2287 - symbol:GSU_2287 "response regulator" ... 112 1.0e-06 1
UNIPROTKB|Q9KRN4 - symbol:VC1602 "Chemotaxis protein CheV... 126 1.2e-06 1
TIGR_CMR|VC_1602 - symbol:VC_1602 "chemotaxis protein Che... 126 1.2e-06 1
TAIR|locus:2116587 - symbol:RR10 "response regulator 10" ... 127 1.8e-06 1
UNIPROTKB|Q9KQ05 - symbol:VC_2202 "Chemotaxis protein Che... 124 2.2e-06 1
TIGR_CMR|VC_2202 - symbol:VC_2202 "chemotaxis protein Che... 124 2.2e-06 1
TIGR_CMR|GSU_0879 - symbol:GSU_0879 "chemotaxis protein C... 124 2.3e-06 1
UNIPROTKB|Q9A5I5 - symbol:pleD "Response regulator PleD" ... 111 2.3e-06 2
TIGR_CMR|SPO_1953 - symbol:SPO_1953 "phosphate regulon tr... 106 2.6e-06 2
TIGR_CMR|NSE_0512 - symbol:NSE_0512 "response regulator/G... 97 2.8e-06 2
TIGR_CMR|CBU_1227 - symbol:CBU_1227 "DNA-binding response... 121 3.1e-06 1
UNIPROTKB|P0AE67 - symbol:cheY species:83333 "Escherichia... 107 3.4e-06 1
UNIPROTKB|Q74AX6 - symbol:cheY40H-1 "Response receiver Ch... 107 3.4e-06 1
TIGR_CMR|GSU_2223 - symbol:GSU_2223 "chemotaxis protein C... 107 3.4e-06 1
TAIR|locus:2065398 - symbol:RR14 "response regulator 14" ... 123 5.3e-06 1
UNIPROTKB|Q3ADA5 - symbol:cheY2 "Chemotaxis protein CheY"... 82 6.0e-06 2
TIGR_CMR|CHY_1032 - symbol:CHY_1032 "chemotaxis protein C... 82 6.0e-06 2
TIGR_CMR|BA_3067 - symbol:BA_3067 "DNA-binding response r... 92 6.2e-06 2
TIGR_CMR|GSU_1129 - symbol:GSU_1129 "sigma-54 dependent D... 105 6.4e-06 2
UNIPROTKB|Q0BZW4 - symbol:pleD "Response regulator PleD" ... 105 6.4e-06 2
UNIPROTKB|Q45976 - symbol:divK "Cell division response re... 85 7.3e-06 2
TIGR_CMR|CHY_1125 - symbol:CHY_1125 "response regulator" ... 117 8.1e-06 1
UNIPROTKB|Q9KRC3 - symbol:VC_1719 "DNA-binding response r... 84 8.2e-06 2
TIGR_CMR|VC_1719 - symbol:VC_1719 "DNA-binding response r... 84 8.2e-06 2
UNIPROTKB|G3LTY8 - symbol:phoB "Two-component regulator p... 108 8.3e-06 2
TIGR_CMR|BA_5504 - symbol:BA_5504 "DNA-binding response r... 94 1.1e-05 2
TIGR_CMR|GSU_2046 - symbol:GSU_2046 "response regulator" ... 96 1.1e-05 2
TIGR_CMR|CHY_2047 - symbol:CHY_2047 "DNA-binding response... 103 1.2e-05 2
TIGR_CMR|BA_4920 - symbol:BA_4920 "DNA-binding response r... 102 1.2e-05 2
TIGR_CMR|CPS_0081 - symbol:CPS_0081 "response regulator/G... 87 1.3e-05 2
TIGR_CMR|CPS_3950 - symbol:CPS_3950 "response regulator/G... 122 1.4e-05 1
TIGR_CMR|GSU_0877 - symbol:GSU_0877 "response regulator" ... 97 1.7e-05 2
TAIR|locus:2130095 - symbol:RR2 "response regulator 2" sp... 122 1.7e-05 1
WARNING: Descriptions of 78 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2080590 [details] [associations]
symbol:ARR9 "response regulator 9" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;IPI] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0009736 "cytokinin mediated signaling pathway"
evidence=RCA;IMP;TAS] [GO:0007623 "circadian rhythm"
evidence=RCA;IMP] [GO:0009735 "response to cytokinin stimulus"
evidence=IEP] [GO:0009740 "gibberellic acid mediated signaling
pathway" evidence=RCA] [GO:0010162 "seed dormancy process"
evidence=RCA] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0005634 GO:GO:0009536 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006355 GO:GO:0007623 GO:GO:0006351
GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034820 KO:K14492 eggNOG:COG3706
ProtClustDB:CLSN2683767 EMBL:AB010918 EMBL:AL138655 EMBL:AY090234
EMBL:AY133571 IPI:IPI00543561 PIR:T47764 RefSeq:NP_191263.1
UniGene:At.245 ProteinModelPortal:O80366 SMR:O80366 IntAct:O80366
STRING:O80366 EnsemblPlants:AT3G57040.1 GeneID:824871
KEGG:ath:AT3G57040 GeneFarm:4126 TAIR:At3g57040 InParanoid:O80366
OMA:GISTDRA PhylomeDB:O80366 Genevestigator:O80366
GermOnline:AT3G57040 Uniprot:O80366
Length = 234
Score = 584 (210.6 bits), Expect = 1.6e-65, Sum P(2) = 1.6e-65
Identities = 116/149 (77%), Positives = 130/149 (87%)
Query: 13 ESQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVY--- 69
ESQFHVLAVDDS+ DRKLIERLL+ SS QVTTVDSGSKALEFLGL + + + +
Sbjct: 6 ESQFHVLAVDDSLFDRKLIERLLQKSSCQVTTVDSGSKALEFLGLRQSTDSNDPNAFSKA 65
Query: 70 PNMHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEG 129
P HQ V VNL+ITDYCMPGMTGYDLLKK+KESS+ RDIPVVIMSSENVP+RISRCLEEG
Sbjct: 66 PVNHQVVEVNLIITDYCMPGMTGYDLLKKVKESSAFRDIPVVIMSSENVPARISRCLEEG 125
Query: 130 AEEFFLKPVRLSDLNKLKPHLMKTKIKDQ 158
AEEFFLKPVRL+DLNKLKPH+MKTK+K+Q
Sbjct: 126 AEEFFLKPVRLADLNKLKPHMMKTKLKNQ 154
Score = 101 (40.6 bits), Expect = 1.6e-65, Sum P(2) = 1.6e-65
Identities = 18/27 (66%), Positives = 24/27 (88%)
Query: 215 NNKRKALEEGLSPERTRPRYNGIATVV 241
NNKRK++EEG+S +R RPR++GIAT V
Sbjct: 208 NNKRKSVEEGISTDRARPRFDGIATAV 234
>TAIR|locus:2040282 [details] [associations]
symbol:RR3 "response regulator 3" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009736 "cytokinin mediated
signaling pathway" evidence=RCA;IMP;TAS] [GO:0007623 "circadian
rhythm" evidence=RCA;IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010029 "regulation of seed germination"
evidence=RCA] [GO:0031537 "regulation of anthocyanin metabolic
process" evidence=RCA] [GO:0048831 "regulation of shoot system
development" evidence=RCA] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0009536
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006355 GO:GO:0007623
GO:GO:0006351 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K14492 eggNOG:COG3706
EMBL:AB010917 EMBL:AC005662 EMBL:AY074643 IPI:IPI00535987
PIR:T48853 RefSeq:NP_181663.1 UniGene:At.244
ProteinModelPortal:O80365 SMR:O80365 IntAct:O80365 STRING:O80365
EnsemblPlants:AT2G41310.1 GeneID:818730 KEGG:ath:AT2G41310
GeneFarm:4125 TAIR:At2g41310 InParanoid:O80365 OMA:METESKF
PhylomeDB:O80365 ProtClustDB:CLSN2683767 Genevestigator:O80365
GermOnline:AT2G41310 Uniprot:O80365
Length = 225
Score = 579 (208.9 bits), Expect = 2.6e-63, Sum P(2) = 2.6e-63
Identities = 112/147 (76%), Positives = 130/147 (88%)
Query: 13 ESQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQ-SSHSVYPN 71
ES+FHVLAVDDS+ DRK+IERLL+ SS QVTTVDSGSKALEFLGL DD ++ S P
Sbjct: 6 ESKFHVLAVDDSLFDRKMIERLLQKSSCQVTTVDSGSKALEFLGLRVDDNDPNALSTSPQ 65
Query: 72 MHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAE 131
+HQEV +NL+ITDYCMPGMTGYDLLKK+KES++ R IPVVIMSSENVP+RISRCLEEGAE
Sbjct: 66 IHQEVEINLIITDYCMPGMTGYDLLKKVKESAAFRSIPVVIMSSENVPARISRCLEEGAE 125
Query: 132 EFFLKPVRLSDLNKLKPHLMKTKIKDQ 158
EFFLKPV+L+DL KLKPH+MKTK+K +
Sbjct: 126 EFFLKPVKLADLTKLKPHMMKTKLKKE 152
Score = 85 (35.0 bits), Expect = 2.6e-63, Sum P(2) = 2.6e-63
Identities = 16/28 (57%), Positives = 23/28 (82%)
Query: 214 NNNKRKALEEGLSPERTRPRYNGIATVV 241
++NKRKA+EE +S +R+RP+YN I T V
Sbjct: 198 SSNKRKAMEEVVSTDRSRPKYNDITTSV 225
>UNIPROTKB|Q4GZK2 [details] [associations]
symbol:rr9 "Type A response regulator 9" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0009735
GO:GO:0006355 GO:GO:0035556 GO:GO:0007623 GO:GO:0009736
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
EMBL:CM000136 EMBL:AJ938078 STRING:Q4GZK2 Uniprot:Q4GZK2
Length = 201
Score = 566 (204.3 bits), Expect = 4.2e-59, Sum P(2) = 4.2e-59
Identities = 112/145 (77%), Positives = 130/145 (89%)
Query: 13 ESQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNM 72
E+ FHVLAVDDS+ DRKLIERLLKTSS+QVTTVDSGSKALEFLGLH+ + S S +
Sbjct: 6 EAPFHVLAVDDSLPDRKLIERLLKTSSFQVTTVDSGSKALEFLGLHDHE-DSPISTQSDQ 64
Query: 73 HQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEE 132
QEV VNL+ITDYCMPGMTGYDLLKKIKESS LRDIPVVIMSS+N+PSRI+RCLEEGA+E
Sbjct: 65 -QEVAVNLIITDYCMPGMTGYDLLKKIKESSYLRDIPVVIMSSDNIPSRINRCLEEGADE 123
Query: 133 FFLKPVRLSDLNKLKPHLMKTKIKD 157
FFLKPVRLSD++KLKPH++K++ K+
Sbjct: 124 FFLKPVRLSDMSKLKPHILKSRCKE 148
Score = 58 (25.5 bits), Expect = 4.2e-59, Sum P(2) = 4.2e-59
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 214 NNNKRKALEEGLSPERTRPRYN 235
N++KRKA++E + P RPR++
Sbjct: 180 NSHKRKAVDEEILPHTIRPRHS 201
>UNIPROTKB|Q4GZK7 [details] [associations]
symbol:rr4 "Type A response regulator 4" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0009735 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 HOGENOM:HOG000034820 EMBL:CM000126
EMBL:AJ938073 Uniprot:Q4GZK7
Length = 232
Score = 553 (199.7 bits), Expect = 1.9e-53, P = 1.9e-53
Identities = 110/144 (76%), Positives = 125/144 (86%)
Query: 13 ESQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHE--DDGQSSHSVYP 70
ES+FHVLAVDDS+IDRKLIE LLK SSYQVTTVDSGSKALE LGL + DD SS S
Sbjct: 7 ESRFHVLAVDDSLIDRKLIEMLLKNSSYQVTTVDSGSKALELLGLRDEGDDSSSSPSSSS 66
Query: 71 NMHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGA 130
HQE+ VNL+ITDYCMPGMTGYDLLK++K SSSL+DIPVVIMSSENVP+RI+RCLE+GA
Sbjct: 67 PDHQEIDVNLIITDYCMPGMTGYDLLKRVKGSSSLKDIPVVIMSSENVPARINRCLEDGA 126
Query: 131 EEFFLKPVRLSDLNKLKPHLMKTK 154
EEFFLKPV+L+D+ KLK HL+K K
Sbjct: 127 EEFFLKPVKLADMKKLKSHLLKRK 150
>TAIR|locus:2194584 [details] [associations]
symbol:ARR4 "response regulator 4" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS;TAS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0010017
"red or far-red light signaling pathway" evidence=IMP] [GO:0009736
"cytokinin mediated signaling pathway" evidence=RCA;IMP;TAS]
[GO:0010114 "response to red light" evidence=IMP] [GO:0009793
"embryo development ending in seed dormancy" evidence=IMP]
[GO:0007623 "circadian rhythm" evidence=RCA;IMP] [GO:0042752
"regulation of circadian rhythm" evidence=IGI] [GO:0009735
"response to cytokinin stimulus" evidence=IEP] [GO:0004674 "protein
serine/threonine kinase activity" evidence=IDA] [GO:0046777
"protein autophosphorylation" evidence=IDA] [GO:0006612 "protein
targeting to membrane" evidence=RCA] [GO:0009963 "positive
regulation of flavonoid biosynthetic process" evidence=RCA]
[GO:0010363 "regulation of plant-type hypersensitive response"
evidence=RCA] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0007623 GO:GO:0004674
GO:GO:0046777 GO:GO:0006351 GO:GO:0042752 GO:GO:0010114
GO:GO:0009793 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 EMBL:AC007067 GO:GO:0010017
HOGENOM:HOG000034820 KO:K14492 ProtClustDB:CLSN2912722
EMBL:AB008487 EMBL:AB010915 EMBL:AF057282 IPI:IPI00523637
PIR:T48851 RefSeq:NP_172517.1 UniGene:At.22981 UniGene:At.67259
ProteinModelPortal:O82798 SMR:O82798 IntAct:O82798 STRING:O82798
EnsemblPlants:AT1G10470.1 GeneID:837587 KEGG:ath:AT1G10470
GeneFarm:4121 TAIR:At1g10470 InParanoid:O82798 OMA:KRIRDYM
PhylomeDB:O82798 Genevestigator:O82798 GermOnline:AT1G10470
Uniprot:O82798
Length = 259
Score = 421 (153.3 bits), Expect = 2.0e-41, Sum P(2) = 2.0e-41
Identities = 84/138 (60%), Positives = 111/138 (80%)
Query: 15 QFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQ 74
+ HVLAVDDS++DR +IERLL+ +S +VT VDSG +ALEFLGL D + + + + +
Sbjct: 33 EVHVLAVDDSLVDRIVIERLLRITSCKVTAVDSGWRALEFLGL---DNEKASAEFDRLK- 88
Query: 75 EVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFF 134
V+L+ITDYCMPGMTGY+LLKKIKESS+ R++PVVIMSSENV +RI RCLEEGA++F
Sbjct: 89 ---VDLIITDYCMPGMTGYELLKKIKESSNFREVPVVIMSSENVLTRIDRCLEEGAQDFL 145
Query: 135 LKPVRLSDLNKLKPHLMK 152
LKPV+L+D+ +L+ HL K
Sbjct: 146 LKPVKLADVKRLRSHLTK 163
Score = 35 (17.4 bits), Expect = 2.0e-41, Sum P(2) = 2.0e-41
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 214 NNNKRKALEEGLSPERTRP 232
N NKRK E+ S + P
Sbjct: 169 NGNKRKLPEDSSSVNSSLP 187
>TAIR|locus:2097870 [details] [associations]
symbol:RR5 "response regulator 5" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS;IMP] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] [GO:0009736 "cytokinin mediated signaling
pathway" evidence=RCA;IMP;TAS] [GO:0010114 "response to red light"
evidence=IMP] [GO:0007623 "circadian rhythm" evidence=RCA;IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006612 "protein targeting to membrane"
evidence=RCA] [GO:0009963 "positive regulation of flavonoid
biosynthetic process" evidence=RCA] [GO:0010363 "regulation of
plant-type hypersensitive response" evidence=RCA]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0005739 GO:GO:0005634 GO:GO:0005737 GO:GO:0009536
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006355 GO:GO:0007623
GO:GO:0006351 GO:GO:0010114 GO:GO:0009736 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784 EMBL:AL049658
HOGENOM:HOG000034820 KO:K14492 EMBL:AB008488 EMBL:AB010916
EMBL:AF057281 EMBL:AY072390 EMBL:AY114698 IPI:IPI00516847
PIR:T06673 PIR:T50855 PIR:T50856 RefSeq:NP_190393.1
UniGene:At.24915 ProteinModelPortal:Q9SB04 SMR:Q9SB04 IntAct:Q9SB04
STRING:Q9SB04 EnsemblPlants:AT3G48100.1 GeneID:823965
KEGG:ath:AT3G48100 GeneFarm:4122 TAIR:At3g48100 InParanoid:Q9SB04
OMA:LEANDIY PhylomeDB:Q9SB04 ProtClustDB:CLSN2684027
Genevestigator:Q9SB04 GermOnline:AT3G48100 Uniprot:Q9SB04
Length = 184
Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
Identities = 85/138 (61%), Positives = 113/138 (81%)
Query: 17 HVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEV 76
HVLAVDDS++DRK IERLL+ SS +VT VDS ++AL++LGL DG+++ SV +++
Sbjct: 26 HVLAVDDSMVDRKFIERLLRVSSCKVTVVDSATRALQYLGL---DGENNSSVG---FEDL 79
Query: 77 GVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLK 136
+NL++TDY MPGMTGY+LLKKIKESS+ R+IPVVIMSSEN+ RI RCLEEGAE+F LK
Sbjct: 80 KINLIMTDYSMPGMTGYELLKKIKESSAFREIPVVIMSSENILPRIDRCLEEGAEDFLLK 139
Query: 137 PVRLSDLNKLKPHLMKTK 154
PV+L+D+ +L+ LMK +
Sbjct: 140 PVKLADVKRLRDSLMKAE 157
>TAIR|locus:2102509 [details] [associations]
symbol:RR17 "response regulator 17" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009736 "cytokinin mediated
signaling pathway" evidence=TAS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005739 GO:GO:0005634
GO:GO:0009536 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006355
GO:GO:0006351 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 HOGENOM:HOG000034820 KO:K14492
EMBL:AF305722 EMBL:AL163972 IPI:IPI00540746 PIR:T49039
RefSeq:NP_567037.1 UniGene:At.5240 ProteinModelPortal:Q9FPR6
SMR:Q9FPR6 STRING:Q9FPR6 EnsemblPlants:AT3G56380.1 GeneID:824805
KEGG:ath:AT3G56380 GeneFarm:4130 TAIR:At3g56380 InParanoid:Q9FPR6
OMA:MEEELHV PhylomeDB:Q9FPR6 ProtClustDB:CLSN2917444
Genevestigator:Q9FPR6 GermOnline:AT3G56380 Uniprot:Q9FPR6
Length = 153
Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
Identities = 82/142 (57%), Positives = 115/142 (80%)
Query: 13 ESQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNM 72
E + HVLAVDD++IDRKL+ER+LK SS +VTT ++G +ALE+LGL D Q + S+ N+
Sbjct: 17 EEELHVLAVDDNLIDRKLVERILKISSCKVTTAENGLRALEYLGL--GDPQQTDSL-TNV 73
Query: 73 HQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEE 132
+ VNL+ITDYCMPGMTG++LLKK+KESS+L+++PVVI+SSEN+P+RI++CL GA+
Sbjct: 74 MK---VNLIITDYCMPGMTGFELLKKVKESSNLKEVPVVILSSENIPTRINKCLASGAQM 130
Query: 133 FFLKPVRLSDLNKLKPHLMKTK 154
F KP++LSD+ KLK HL+ +
Sbjct: 131 FMQKPLKLSDVEKLKCHLLNCR 152
>TAIR|locus:2027237 [details] [associations]
symbol:ARR15 "response regulator 15" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] [GO:0009736 "cytokinin mediated signaling
pathway" evidence=IGI;RCA;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007623
"circadian rhythm" evidence=RCA] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0006351 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 EMBL:AC008263 EMBL:AC013258
EMBL:AF305720 IPI:IPI00538856 RefSeq:NP_177627.1 UniGene:At.11589
ProteinModelPortal:Q7G8V2 SMR:Q7G8V2 IntAct:Q7G8V2 STRING:Q7G8V2
EnsemblPlants:AT1G74890.1 GeneID:843828 KEGG:ath:AT1G74890
GeneFarm:4128 TAIR:At1g74890 HOGENOM:HOG000034820 InParanoid:Q7G8V2
KO:K14492 OMA:KISACKV PhylomeDB:Q7G8V2 ProtClustDB:CLSN2914197
Genevestigator:Q7G8V2 GermOnline:AT1G74890 Uniprot:Q7G8V2
Length = 206
Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
Identities = 83/138 (60%), Positives = 112/138 (81%)
Query: 15 QFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQ 74
+ HVLAVDDS +DRK+IERLLK S+ +VTTV+SG++AL++LGL D+G S +
Sbjct: 17 ELHVLAVDDSFVDRKVIERLLKISACKVTTVESGTRALQYLGLDGDNGSSGL-------K 69
Query: 75 EVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFF 134
++ VNL++TDY MPG+TGY+LLKKIKESS+LR+IPVVIMSSEN+ RI +C+ EGAEEF
Sbjct: 70 DLKVNLIVTDYSMPGLTGYELLKKIKESSALREIPVVIMSSENIQPRIEQCMIEGAEEFL 129
Query: 135 LKPVRLSDLNKLKPHLMK 152
LKPV+L+D+ +LK +M+
Sbjct: 130 LKPVKLADVKRLKELIMR 147
>TAIR|locus:2011286 [details] [associations]
symbol:ARR7 "response regulator 7" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;TAS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009736 "cytokinin mediated
signaling pathway" evidence=RCA;IMP;TAS] [GO:0019827 "stem cell
maintenance" evidence=IMP] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010200 "response to chitin" evidence=IEP] [GO:0007623
"circadian rhythm" evidence=RCA] [GO:0010029 "regulation of seed
germination" evidence=RCA] [GO:0031537 "regulation of anthocyanin
metabolic process" evidence=RCA] [GO:0048831 "regulation of shoot
system development" evidence=RCA] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0006355 GO:GO:0006351
GO:GO:0010200 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K14492
ProtClustDB:CLSN2914197 eggNOG:COG3706 EMBL:AB008490 EMBL:AC068602
IPI:IPI00536268 PIR:T50854 RefSeq:NP_173339.1 UniGene:At.238
ProteinModelPortal:Q9ZWS7 SMR:Q9ZWS7 IntAct:Q9ZWS7 STRING:Q9ZWS7
EnsemblPlants:AT1G19050.1 GeneID:838487 KEGG:ath:AT1G19050
GeneFarm:4124 TAIR:At1g19050 InParanoid:Q9ZWS7 OMA:LRISSCK
PhylomeDB:Q9ZWS7 Genevestigator:Q9ZWS7 GermOnline:AT1G19050
GO:GO:0019827 Uniprot:Q9ZWS7
Length = 206
Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
Identities = 81/143 (56%), Positives = 117/143 (81%)
Query: 15 QFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQ 74
+ HVLAVDDSI+DRK+IERLL+ SS +VTTV+SG++AL++LGL D G+ + ++ +
Sbjct: 23 ELHVLAVDDSIVDRKVIERLLRISSCKVTTVESGTRALQYLGL--DGGKGASNL-----K 75
Query: 75 EVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFF 134
++ VNL++TDY MPG++GYDLLKKIKESS+ R++PVVIMSSEN+ RI CL+EGAEEF
Sbjct: 76 DLKVNLIVTDYSMPGLSGYDLLKKIKESSAFREVPVVIMSSENILPRIQECLKEGAEEFL 135
Query: 135 LKPVRLSDLNKLKPHLMKTKIKD 157
LKPV+L+D+ ++K +M+ + ++
Sbjct: 136 LKPVKLADVKRIKQLIMRNEAEE 158
>TAIR|locus:2025911 [details] [associations]
symbol:ARR3 "response regulator 3" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS;IDA] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;IDA;TAS] [GO:0006355 "regulation
of transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009736
"cytokinin mediated signaling pathway" evidence=TAS] [GO:0010114
"response to red light" evidence=IMP] [GO:0010161 "red light
signaling pathway" evidence=IMP] [GO:0007623 "circadian rhythm"
evidence=IMP] [GO:0042752 "regulation of circadian rhythm"
evidence=IGI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0007623 GO:GO:0006351 GO:GO:0042752 EMBL:AC007258
GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034820 KO:K14492 EMBL:AB008486 IPI:IPI00532280
PIR:T50853 RefSeq:NP_176202.1 UniGene:At.237
ProteinModelPortal:Q9ZWS9 SMR:Q9ZWS9 IntAct:Q9ZWS9 STRING:Q9ZWS9
EnsemblPlants:AT1G59940.1 GeneID:842288 KEGG:ath:AT1G59940
GeneFarm:4120 TAIR:At1g59940 eggNOG:COG3706 InParanoid:Q9ZWS9
OMA:RSEMIGI PhylomeDB:Q9ZWS9 ProtClustDB:CLSN2912722
Genevestigator:Q9ZWS9 GermOnline:AT1G59940 GO:GO:0010161
Uniprot:Q9ZWS9
Length = 231
Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
Identities = 84/138 (60%), Positives = 111/138 (80%)
Query: 15 QFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQ 74
Q HVLAVDDS++DR +IERLL+ +S +VT VDSG +ALEFLGL DD +++
Sbjct: 32 QVHVLAVDDSLVDRIVIERLLRITSCKVTAVDSGWRALEFLGL--DDDKAAVEF-----D 84
Query: 75 EVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFF 134
+ V+L+ITDYCMPGMTGY+LLKKIKES+S +++PVVIMSSENV +RI RCLEEGAE+F
Sbjct: 85 RLKVDLIITDYCMPGMTGYELLKKIKESTSFKEVPVVIMSSENVMTRIDRCLEEGAEDFL 144
Query: 135 LKPVRLSDLNKLKPHLMK 152
LKPV+L+D+ +L+ +L +
Sbjct: 145 LKPVKLADVKRLRSYLTR 162
>TAIR|locus:2170723 [details] [associations]
symbol:ARR6 "response regulator 6" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS;TAS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;TAS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] [GO:0009736 "cytokinin mediated signaling
pathway" evidence=RCA;IMP;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0007623 "circadian rhythm" evidence=RCA]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0005739 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009536 GO:GO:0006355 GO:GO:0006351 GO:GO:0009736
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 KO:K14492 ProtClustDB:CLSN2684027
EMBL:AB008489 EMBL:AB008491 EMBL:AB009053 EMBL:BT004799
IPI:IPI00547780 PIR:T50857 PIR:T50860 RefSeq:NP_201097.1
UniGene:At.24207 ProteinModelPortal:Q9ZWS6 SMR:Q9ZWS6 IntAct:Q9ZWS6
STRING:Q9ZWS6 EnsemblPlants:AT5G62920.1 GeneID:836412
KEGG:ath:AT5G62920 GeneFarm:4123 TAIR:At5g62920 InParanoid:Q9ZWS6
OMA:DDSQEIK PhylomeDB:Q9ZWS6 Genevestigator:Q9ZWS6
GermOnline:AT5G62920 Uniprot:Q9ZWS6
Length = 186
Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
Identities = 84/138 (60%), Positives = 109/138 (78%)
Query: 17 HVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEV 76
HVLAVDDS +DRK IERLL+ SS +VT VDS ++AL++LGL ++ SV +++
Sbjct: 26 HVLAVDDSHVDRKFIERLLRVSSCKVTVVDSATRALQYLGLDVEE----KSVG---FEDL 78
Query: 77 GVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLK 136
VNL++TDY MPGMTGY+LLKKIKESS+ R++PVVIMSSEN+ RI RCLEEGAE+F LK
Sbjct: 79 KVNLIMTDYSMPGMTGYELLKKIKESSAFREVPVVIMSSENILPRIDRCLEEGAEDFLLK 138
Query: 137 PVRLSDLNKLKPHLMKTK 154
PV+LSD+ +L+ LMK +
Sbjct: 139 PVKLSDVKRLRDSLMKVE 156
>UNIPROTKB|Q4GZK8 [details] [associations]
symbol:rr3 "Type A response regulator 3" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0005737
GO:GO:0009735 GO:GO:0006355 GO:GO:0035556 GO:GO:0007623
GO:GO:0010114 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 HOGENOM:HOG000034820 EMBL:CM000127 EMBL:AJ938072
STRING:Q4GZK8 Uniprot:Q4GZK8
Length = 131
Score = 265 (98.3 bits), Expect = 6.4e-37, Sum P(2) = 6.4e-37
Identities = 47/69 (68%), Positives = 63/69 (91%)
Query: 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137
V+++ITDYCMP MTG+DLLK++KES+ L++IPVV+MSSEN P+RI RCLEEGAE+F +KP
Sbjct: 56 VHMIITDYCMPEMTGFDLLKRVKESAELKEIPVVLMSSENSPTRIRRCLEEGAEDFLIKP 115
Query: 138 VRLSDLNKL 146
VR SD+++L
Sbjct: 116 VRPSDVSRL 124
Score = 148 (57.2 bits), Expect = 6.4e-37, Sum P(2) = 6.4e-37
Identities = 30/45 (66%), Positives = 37/45 (82%)
Query: 13 ESQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGL 57
E + HVLAVDDSI+DR +I RLL++S Y+VTTVDSG +ALE L L
Sbjct: 8 EPEPHVLAVDDSIVDRTVISRLLRSSKYRVTTVDSGKRALEVLSL 52
>UNIPROTKB|Q4GZK5 [details] [associations]
symbol:rr6 "Type A response regulator 6" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0005737
GO:GO:0009735 GO:GO:0006355 GO:GO:0035556 GO:GO:0007623
GO:GO:0010114 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
EMBL:AJ938075 ProteinModelPortal:Q4GZK5 KEGG:dosa:Os04t0673300-01
Gramene:Q4GZK5 Uniprot:Q4GZK5
Length = 170
Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
Identities = 80/134 (59%), Positives = 105/134 (78%)
Query: 13 ESQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNM 72
+S+ HVLAVDDS +DR +I ++L++S Y+VTTV+S ++ALE L L + PN
Sbjct: 47 QSEMHVLAVDDSSVDRAVIAKILRSSKYRVTTVESATRALELLCL---------GLVPN- 96
Query: 73 HQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEE 132
VN++ITDY MPGMTGY+LLK++KESS L++IPVVIMSSENVP+RISRCLEEGAE+
Sbjct: 97 -----VNMIITDYWMPGMTGYELLKRVKESSQLKEIPVVIMSSENVPNRISRCLEEGAED 151
Query: 133 FFLKPVRLSDLNKL 146
F LKPVR SD+++L
Sbjct: 152 FLLKPVRPSDVSRL 165
>UNIPROTKB|Q4GZL0 [details] [associations]
symbol:rr1 "Type A response regulator 1" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0009735 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:CM000129 EMBL:AJ938070 eggNOG:NOG76823
Uniprot:Q4GZL0
Length = 231
Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
Identities = 65/134 (48%), Positives = 91/134 (67%)
Query: 18 VLAVDDSIIDRKLIERLLKTS----SYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMH 73
VL VDDS +DR++++ LL +S S+ V VDS KA+EFLGL E+
Sbjct: 10 VLLVDDSPVDRRVVQLLLSSSACAGSFHVIAVDSAKKAMEFLGLKEEG------------ 57
Query: 74 QEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEF 133
+E +++V+TDYCMP MTGY+LLK IK S L+ IPV++MSSEN P RISRC+ GAE+F
Sbjct: 58 KEQAIDMVLTDYCMPEMTGYELLKAIKALSPLKPIPVIVMSSENEPQRISRCMNAGAEDF 117
Query: 134 FLKPVRLSDLNKLK 147
+KP++ D+ +L+
Sbjct: 118 IVKPLQSKDVQRLR 131
>UNIPROTKB|Q4GZK9 [details] [associations]
symbol:rr2 "Type A response regulator 2" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0009735 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 EMBL:AJ938071
ProteinModelPortal:Q4GZK9 KEGG:dosa:Os02t0557800-01 Gramene:Q4GZK9
Uniprot:Q4GZK9
Length = 252
Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
Identities = 69/158 (43%), Positives = 93/158 (58%)
Query: 18 VLAVDDSIIDRKLIERLLKT-------------SSYQVTTVDSGSKALEFLGLHEDDGQS 64
VL VDDS +DR+++E LL+ + + VT VDSG KA+E LG D
Sbjct: 8 VLVVDDSPVDRRVVELLLRAHCGGGGGAAAGEAAPFHVTAVDSGKKAMELLGRRRGDRDH 67
Query: 65 ---SHSVYPNMHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSR 121
S + +++V+TDYCMP MTGYDLLK IK S IPVV+MSSEN P R
Sbjct: 68 LTPSSPAAAAAANDQAIDIVLTDYCMPEMTGYDLLKAIKALGSPNPIPVVVMSSENEPQR 127
Query: 122 ISRCLEEGAEEFFLKPVRLSDLNKLKPHLMKTKIKDQI 159
ISRCL GAE+F LKP++++D+ +L+ T+ K +
Sbjct: 128 ISRCLTAGAEDFILKPLKMNDVQRLRKCSGATRPKSAV 165
>TAIR|locus:2054895 [details] [associations]
symbol:AT2G07440 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0007623 "circadian rhythm"
evidence=RCA] [GO:0009736 "cytokinin mediated signaling pathway"
evidence=RCA] EMBL:CP002685 GenomeReviews:CT485783_GR EMBL:AC006217
IPI:IPI00531473 PIR:H84485 RefSeq:NP_178754.1 UniGene:At.63414
ProteinModelPortal:Q9ZQJ8 SMR:Q9ZQJ8 EnsemblPlants:AT2G07440.1
GeneID:815313 KEGG:ath:AT2G07440 TAIR:At2g07440 InParanoid:Q9ZQJ8
PhylomeDB:Q9ZQJ8 ArrayExpress:Q9ZQJ8 Genevestigator:Q9ZQJ8
Uniprot:Q9ZQJ8
Length = 136
Score = 222 (83.2 bits), Expect = 1.0e-25, Sum P(2) = 1.0e-25
Identities = 44/65 (67%), Positives = 55/65 (84%)
Query: 95 LLKKIK-ESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMKT 153
+ + +K ES++ R I VVIMSSENVP+RISRCLE+GAEEFFLKPV+L D KLKPH+MKT
Sbjct: 2 MARDVKWESAAFRSIHVVIMSSENVPTRISRCLEKGAEEFFLKPVKLVDHTKLKPHMMKT 61
Query: 154 KIKDQ 158
K+K +
Sbjct: 62 KLKKE 66
Score = 84 (34.6 bits), Expect = 1.0e-25, Sum P(2) = 1.0e-25
Identities = 16/28 (57%), Positives = 22/28 (78%)
Query: 214 NNNKRKALEEGLSPERTRPRYNGIATVV 241
++NKRKA+EE +S +R RP+YN I T V
Sbjct: 109 SSNKRKAMEEVISTDRPRPKYNDITTSV 136
>UNIPROTKB|Q4GZK4 [details] [associations]
symbol:rr7 "Type A response regulator 7" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0009735 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 EMBL:AJ938076
ProteinModelPortal:Q4GZK4 KEGG:dosa:Os07t0449700-01 Gramene:Q4GZK4
Uniprot:Q4GZK4
Length = 206
Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
Identities = 55/95 (57%), Positives = 74/95 (77%)
Query: 58 HEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSEN 117
+ D G+ + + + E V+++ITDY MP MTGYDLLKKIKESS L+ IPVVIMSSEN
Sbjct: 115 YRDSGKRALEI---LGSEPNVSMIITDYWMPEMTGYDLLKKIKESSELKQIPVVIMSSEN 171
Query: 118 VPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMK 152
VP+RISRCLEEGAE+F LKPVR +D++++ +++
Sbjct: 172 VPTRISRCLEEGAEDFLLKPVRPADISRITSRMLQ 206
>UNIPROTKB|Q4GZK3 [details] [associations]
symbol:rr8 "Type A response regulator 8" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0009735 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:AJ938077 ProteinModelPortal:Q4GZK3
STRING:Q4GZK3 KEGG:dosa:Os08t0376700-01 KEGG:dosa:Os08t0377200-01
Gramene:Q4GZK3 Uniprot:Q4GZK3
Length = 121
Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
Identities = 35/79 (44%), Positives = 60/79 (75%)
Query: 72 MHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAE 131
+ E V+++++DYCMP MTGY+LL ++K+S L +PVVI SS+N+P RI +CL+ GA+
Sbjct: 43 LDSEHDVDMIVSDYCMPDMTGYNLLMEVKKSPKLAHLPVVIASSDNIPERIRKCLDGGAK 102
Query: 132 EFFLKPVRLSDLNKLKPHL 150
++ LKPV++ D+ ++ ++
Sbjct: 103 DYILKPVKIVDVPRIMKYI 121
Score = 88 (36.0 bits), Expect = 0.00062, P = 0.00062
Identities = 25/67 (37%), Positives = 37/67 (55%)
Query: 17 HVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGL-HEDDGQSSHSVYPNMHQE 75
HVL VDD+ +DR ++ L + +VT V+S +AL FL H+ D S P+M
Sbjct: 5 HVLVVDDTHVDRHVVSMALMRHNVRVTAVESVMQALMFLDSEHDVDMIVSDYCMPDM--- 61
Query: 76 VGVNLVI 82
G NL++
Sbjct: 62 TGYNLLM 68
>TIGR_CMR|SO_3209 [details] [associations]
symbol:SO_3209 "chemotaxis protein CheY" species:211586
"Shewanella oneidensis MR-1" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 OMA:GHYDFLV
HSSP:P06143 RefSeq:NP_718764.1 ProteinModelPortal:Q8ECD4 SMR:Q8ECD4
GeneID:1170902 KEGG:son:SO_3209 PATRIC:23526102
ProtClustDB:CLSK907053 Uniprot:Q8ECD4
Length = 127
Score = 124 (48.7 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 29/86 (33%), Positives = 49/86 (56%)
Query: 60 DDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVP 119
DDG ++ P M Q+ + V+TD+ MPGM G DLLK I+ SL+ +PV+++++E
Sbjct: 36 DDGSTA---LP-MLQKGDFDFVVTDWNMPGMQGIDLLKAIRADDSLKHLPVLMVTAEAKR 91
Query: 120 SRISRCLEEGAEEFFLKPVRLSDLNK 145
+I + G + +KP + L +
Sbjct: 92 EQIIAAAQAGVNGYVVKPFTAATLKE 117
Score = 57 (25.1 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 13 ESQFHVLAVDDSIIDRKLIERLLKTSSYQVTT-VDSGSKALEFL 55
+ +L VDD R++I+ LL+ + T D GS AL L
Sbjct: 2 DKNMKILIVDDFSTMRRIIKNLLRDLGFNNTQEADDGSTALPML 45
>UNIPROTKB|Q9WYT9 [details] [associations]
symbol:TM_0468 "Response regulator" species:243274
"Thermotoga maritima MSB8" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 GO:GO:0046872
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
EMBL:AE000512 GenomeReviews:AE000512_GR KO:K02485 EMBL:AGIJ01000001
PIR:D72374 RefSeq:NP_228278.1 PDB:3DGE PDB:3DGF PDB:3GL9
PDBsum:3DGE PDBsum:3DGF PDBsum:3GL9 IntAct:Q9WYT9 GeneID:897499
KEGG:tma:TM0468 PATRIC:23935833 OMA:WKRIPVI ProtClustDB:CLSK875163
EvolutionaryTrace:Q9WYT9 Uniprot:Q9WYT9
Length = 122
Score = 101 (40.6 bits), Expect = 9.1e-12, Sum P(2) = 9.1e-12
Identities = 22/73 (30%), Positives = 39/73 (53%)
Query: 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPV 138
+L++ D MP M G+ +LKK++E + IPV++++++ S L GA + KP
Sbjct: 48 DLIVLDIMMPVMDGFTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPF 107
Query: 139 RLSDLNKLKPHLM 151
S + HL+
Sbjct: 108 SPSQFIEEVKHLL 120
Score = 73 (30.8 bits), Expect = 9.1e-12, Sum P(2) = 9.1e-12
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFL 55
VL VDDS + RK++ LK Y+V ++G ALE L
Sbjct: 5 VLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKL 42
>UNIPROTKB|Q0C4H5 [details] [associations]
symbol:cheY "Chemotaxis protein CheY" species:228405
"Hyphomonas neptunium ATCC 15444" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 HOGENOM:HOG000034820 EMBL:CP000158
GenomeReviews:CP000158_GR KO:K03413 RefSeq:YP_759368.1
ProteinModelPortal:Q0C4H5 STRING:Q0C4H5 GeneID:4290241
KEGG:hne:HNE_0639 PATRIC:32214082 OMA:WNMPVMN
BioCyc:HNEP228405:GI69-682-MONOMER Uniprot:Q0C4H5
Length = 121
Score = 104 (41.7 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 22/66 (33%), Positives = 35/66 (53%)
Query: 72 MHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAE 131
M +E + ++ D+ MP M G D L+ ++ + +V S EN P I+ L GA+
Sbjct: 40 MCRESMPDAILLDWNMPTMNGIDFLRALRREEGGKVPRIVFCSIENDPEHINEALRSGAD 99
Query: 132 EFFLKP 137
EF +KP
Sbjct: 100 EFIMKP 105
Score = 65 (27.9 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 19 LAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALE 53
L VDDS + RK+ R+++ + VT G++AL+
Sbjct: 5 LVVDDSRVVRKVASRIVRDLGFSVTEAGDGAEALK 39
>UNIPROTKB|Q9KQD5 [details] [associations]
symbol:VC_2065 "Chemotaxis protein CheY" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0006935 GO:GO:0004871
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 KO:K03413
OMA:GHYDFLV HSSP:P06143 PIR:C82123 RefSeq:NP_231697.1
ProteinModelPortal:Q9KQD5 SMR:Q9KQD5 DNASU:2613445 GeneID:2613445
KEGG:vch:VC2065 PATRIC:20083164 ProtClustDB:CLSK874661
Uniprot:Q9KQD5
Length = 130
Score = 117 (46.2 bits), Expect = 3.9e-11, Sum P(2) = 3.9e-11
Identities = 27/86 (31%), Positives = 48/86 (55%)
Query: 60 DDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVP 119
DDG ++ P M ++ + V+TD+ MPGM G DLLK I+ L+ +PV+++++E
Sbjct: 40 DDGLTA---LP-MLKKGDFDFVVTDWNMPGMQGIDLLKNIRADEELKHLPVLMITAEAKR 95
Query: 120 SRISRCLEEGAEEFFLKPVRLSDLNK 145
+I + G + +KP + L +
Sbjct: 96 EQIIEAAQAGVNGYIVKPFTAATLKE 121
Score = 49 (22.3 bits), Expect = 3.9e-11, Sum P(2) = 3.9e-11
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTT-VDSGSKALEFL 55
+L VDD R++++ LL+ + T D G AL L
Sbjct: 11 ILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPML 49
>TIGR_CMR|VC_2065 [details] [associations]
symbol:VC_2065 "chemotaxis protein CheY" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 KO:K03413 OMA:GHYDFLV
HSSP:P06143 PIR:C82123 RefSeq:NP_231697.1 ProteinModelPortal:Q9KQD5
SMR:Q9KQD5 DNASU:2613445 GeneID:2613445 KEGG:vch:VC2065
PATRIC:20083164 ProtClustDB:CLSK874661 Uniprot:Q9KQD5
Length = 130
Score = 117 (46.2 bits), Expect = 3.9e-11, Sum P(2) = 3.9e-11
Identities = 27/86 (31%), Positives = 48/86 (55%)
Query: 60 DDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVP 119
DDG ++ P M ++ + V+TD+ MPGM G DLLK I+ L+ +PV+++++E
Sbjct: 40 DDGLTA---LP-MLKKGDFDFVVTDWNMPGMQGIDLLKNIRADEELKHLPVLMITAEAKR 95
Query: 120 SRISRCLEEGAEEFFLKPVRLSDLNK 145
+I + G + +KP + L +
Sbjct: 96 EQIIEAAQAGVNGYIVKPFTAATLKE 121
Score = 49 (22.3 bits), Expect = 3.9e-11, Sum P(2) = 3.9e-11
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTT-VDSGSKALEFL 55
+L VDD R++++ LL+ + T D G AL L
Sbjct: 11 ILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPML 49
>TAIR|locus:2151206 [details] [associations]
symbol:PRR7 "pseudo-response regulator 7" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0007623 "circadian rhythm"
evidence=IMP;TAS] [GO:0010017 "red or far-red light signaling
pathway" evidence=IMP] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0009266 "response to temperature stimulus" evidence=IGI]
[GO:0003677 "DNA binding" evidence=IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0009639 "response to red or far red light" evidence=RCA]
[GO:0042752 "regulation of circadian rhythm" evidence=RCA]
[GO:0048574 "long-day photoperiodism, flowering" evidence=RCA]
InterPro:IPR001789 InterPro:IPR010402 Pfam:PF00072 Pfam:PF06203
PROSITE:PS50110 PROSITE:PS51017 SMART:SM00448 GO:GO:0005739
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0045892
GO:GO:0035556 GO:GO:0003677 GO:GO:0007623 GO:GO:0006351
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 EMBL:AB046954
EMBL:AL162973 EMBL:AY039943 EMBL:AY142560 IPI:IPI00520937
PIR:T48302 RefSeq:NP_568107.1 UniGene:At.20552
ProteinModelPortal:Q93WK5 SMR:Q93WK5 STRING:Q93WK5 PRIDE:Q93WK5
EnsemblPlants:AT5G02810.1 GeneID:831793 KEGG:ath:AT5G02810
GeneFarm:4348 TAIR:At5g02810 eggNOG:COG3437 HOGENOM:HOG000034018
InParanoid:Q93WK5 KO:K12129 OMA:HDERNIL PhylomeDB:Q93WK5
ProtClustDB:CLSN2917538 Genevestigator:Q93WK5 GermOnline:AT5G02810
GO:GO:0010017 GO:GO:0009266 Uniprot:Q93WK5
Length = 727
Score = 164 (62.8 bits), Expect = 4.7e-11, P = 4.7e-11
Identities = 44/135 (32%), Positives = 74/135 (54%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVG 77
VL V++ R ++ LL+ SY+V +G +A + L ED N H
Sbjct: 80 VLLVENDDCTRYIVTALLRNCSYEVVEASNGIQAWKVL---ED---------LNNH---- 123
Query: 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137
+++V+T+ MP ++G LL KI S R+IPV++MSS + + +CL +GA +F +KP
Sbjct: 124 IDIVLTEVIMPYLSGIGLLCKILNHKSRRNIPVIMMSSHDSMGLVFKCLSKGAVDFLVKP 183
Query: 138 VRLSDLNKLKPHLMK 152
+R ++L L H+ +
Sbjct: 184 IRKNELKILWQHVWR 198
>UNIPROTKB|Q9KKK8 [details] [associations]
symbol:VC_A1096 "Chemotaxis protein CheY" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 GO:GO:0005622
GO:GO:0006935 GO:GO:0004871 EMBL:AE003853 GenomeReviews:AE003853_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 OMA:MEEELHV
KO:K03413 HSSP:P06143 PIR:D82380 RefSeq:NP_233476.1
ProteinModelPortal:Q9KKK8 DNASU:2612407 GeneID:2612407
KEGG:vch:VCA1096 PATRIC:20086710 ProtClustDB:CLSK789264
Uniprot:Q9KKK8
Length = 125
Score = 93 (37.8 bits), Expect = 5.8e-11, Sum P(2) = 5.8e-11
Identities = 19/72 (26%), Positives = 39/72 (54%)
Query: 74 QEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEF 133
Q+ +++I+D MP MTG++ +K ++ S + P++++++E P + GA +
Sbjct: 48 QKARFDVIISDVNMPVMTGFEFVKAVRMQSQYKFTPILMLTTETSPEKKQEGKAVGATGW 107
Query: 134 FLKPVRLSDLNK 145
+KP L K
Sbjct: 108 LVKPFNPETLLK 119
Score = 75 (31.5 bits), Expect = 5.8e-11, Sum P(2) = 5.8e-11
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKAL 52
VLAVDDSI R+++ L+ + Y+V T G +AL
Sbjct: 10 VLAVDDSISIRQMVSHTLQDAGYEVETAADGREAL 44
>TIGR_CMR|VC_A1096 [details] [associations]
symbol:VC_A1096 "chemotaxis protein CheY" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 OMA:MEEELHV KO:K03413
HSSP:P06143 PIR:D82380 RefSeq:NP_233476.1 ProteinModelPortal:Q9KKK8
DNASU:2612407 GeneID:2612407 KEGG:vch:VCA1096 PATRIC:20086710
ProtClustDB:CLSK789264 Uniprot:Q9KKK8
Length = 125
Score = 93 (37.8 bits), Expect = 5.8e-11, Sum P(2) = 5.8e-11
Identities = 19/72 (26%), Positives = 39/72 (54%)
Query: 74 QEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEF 133
Q+ +++I+D MP MTG++ +K ++ S + P++++++E P + GA +
Sbjct: 48 QKARFDVIISDVNMPVMTGFEFVKAVRMQSQYKFTPILMLTTETSPEKKQEGKAVGATGW 107
Query: 134 FLKPVRLSDLNK 145
+KP L K
Sbjct: 108 LVKPFNPETLLK 119
Score = 75 (31.5 bits), Expect = 5.8e-11, Sum P(2) = 5.8e-11
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKAL 52
VLAVDDSI R+++ L+ + Y+V T G +AL
Sbjct: 10 VLAVDDSISIRQMVSHTLQDAGYEVETAADGREAL 44
>DICTYBASE|DDB_G0284331 [details] [associations]
symbol:regA "response regulator receiver
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0030587 "sorocarp development" evidence=IMP] [GO:0051281
"positive regulation of release of sequestered calcium ion into
cytosol" evidence=IMP] [GO:0051279 "regulation of release of
sequestered calcium ion into cytosol" evidence=IMP] [GO:0046058
"cAMP metabolic process" evidence=IMP] [GO:0031276 "negative
regulation of lateral pseudopodium assembly" evidence=IMP]
[GO:0004115 "3',5'-cyclic-AMP phosphodiesterase activity"
evidence=IDA;IMP] [GO:0005622 "intracellular" evidence=TAS]
[GO:0006970 "response to osmotic stress" evidence=TAS] [GO:0030435
"sporulation resulting in formation of a cellular spore"
evidence=IMP] [GO:0007275 "multicellular organismal development"
evidence=IMP] [GO:0047555 "3',5'-cyclic-GMP phosphodiesterase
activity" evidence=IDA] [GO:0006198 "cAMP catabolic process"
evidence=IDA] [GO:0035556 "intracellular signal transduction"
evidence=IEA] [GO:0008081 "phosphoric diester hydrolase activity"
evidence=IEA] [GO:0007165 "signal transduction" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0004114 "3',5'-cyclic-nucleotide
phosphodiesterase activity" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0000156 "phosphorelay
response regulator activity" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0030552 "cAMP binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR001789 InterPro:IPR002073 InterPro:IPR003607
InterPro:IPR023088 InterPro:IPR023174 Pfam:PF00072 Pfam:PF00233
PRINTS:PR00387 PROSITE:PS00126 PROSITE:PS50110 SMART:SM00448
SMART:SM00471 dictyBase:DDB_G0284331 GO:GO:0005829
GenomeReviews:CM000153_GR GO:GO:0006355 GO:GO:0035556 GO:GO:0046872
GO:GO:0030435 GO:GO:0030587 GO:GO:0005622 GO:GO:0006970
GO:GO:0051281 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG3706 EMBL:AAFI02000064 GO:GO:0030552 GO:GO:0031276
GO:GO:0004115 GO:GO:0006198 Gene3D:1.10.1300.10 EMBL:U60170
EMBL:AJ005398 RefSeq:XP_638612.1 ProteinModelPortal:Q23917
STRING:Q23917 EnsemblProtists:DDB0191479 GeneID:8624583
KEGG:ddi:DDB_G0284331 OMA:SHYETIC ProtClustDB:CLSZ2728943
Uniprot:Q23917
Length = 793
Score = 163 (62.4 bits), Expect = 6.8e-11, P = 6.8e-11
Identities = 43/133 (32%), Positives = 69/133 (51%)
Query: 14 SQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMH 73
S+ +L DD + RK++ LLK Y VT V +G A E++ + GQ +
Sbjct: 158 SKVRILVADDDDVQRKILNNLLKKFHYNVTLVPNGEIAWEYI----NKGQQKY------- 206
Query: 74 QEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISR-CLEEGAEE 132
+LV+TD MP +TG+DLL++I + R IPV++MS V + + ++ G ++
Sbjct: 207 -----DLVLTDVMMPHITGFDLLQRINDHPVHRHIPVILMSGTAVDYKYANDTIKIGGQD 261
Query: 133 FFLKPVRLSDLNK 145
F KP+ L K
Sbjct: 262 FLTKPIAKELLKK 274
>TAIR|locus:2044376 [details] [associations]
symbol:PRR9 "pseudo-response regulator 9" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0007623 "circadian rhythm"
evidence=IMP;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0009266 "response to temperature stimulus" evidence=IGI]
[GO:0010017 "red or far-red light signaling pathway" evidence=IMP]
[GO:0003677 "DNA binding" evidence=IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
InterPro:IPR001789 InterPro:IPR010402 Pfam:PF00072 Pfam:PF06203
PROSITE:PS50110 PROSITE:PS51017 SMART:SM00448 GO:GO:0005634
GO:GO:0045892 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0007623 GO:GO:0006351 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034018
GO:GO:0010017 GO:GO:0009266 EMBL:AB046953 EMBL:AF272040
EMBL:AC005310 EMBL:AY099676 EMBL:AY128856 IPI:IPI00545462
PIR:T02680 RefSeq:NP_566085.1 UniGene:At.1675 UniGene:At.65052
ProteinModelPortal:Q8L500 SMR:Q8L500 STRING:Q8L500 PRIDE:Q8L500
EnsemblPlants:AT2G46790.1 GeneID:819292 KEGG:ath:AT2G46790
GeneFarm:4360 TAIR:At2g46790 eggNOG:COG0745 InParanoid:Q8L500
KO:K12128 OMA:HEACKNI PhylomeDB:Q8L500 ProtClustDB:CLSN2688972
Genevestigator:Q8L500 GermOnline:AT2G46790 Uniprot:Q8L500
Length = 468
Score = 159 (61.0 bits), Expect = 7.9e-11, P = 7.9e-11
Identities = 38/135 (28%), Positives = 73/135 (54%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVG 77
VL V+ R++I LL+ Y+V V G A E L + SH++
Sbjct: 39 VLLVESDYSTRQIITALLRKCCYKVVAVSDGLAAWEVLK------EKSHNI--------- 83
Query: 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137
+L++T+ +P ++G+ LL + E + ++IPV++MSS++ + +C+ GA ++ +KP
Sbjct: 84 -DLILTELDLPSISGFALLALVMEHEACKNIPVIMMSSQDSIKMVLKCMLRGAADYLIKP 142
Query: 138 VRLSDLNKLKPHLMK 152
+R ++L L H+ +
Sbjct: 143 MRKNELKNLWQHVWR 157
>TIGR_CMR|GSU_2219 [details] [associations]
symbol:GSU_2219 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 HSSP:P08402
RefSeq:NP_953268.1 ProteinModelPortal:Q74AY0 GeneID:2685652
KEGG:gsu:GSU2219 PATRIC:22027293 OMA:VMLTAKK ProtClustDB:CLSK828762
BioCyc:GSUL243231:GH27-2166-MONOMER Uniprot:Q74AY0
Length = 123
Score = 106 (42.4 bits), Expect = 3.6e-10, Sum P(2) = 3.6e-10
Identities = 21/61 (34%), Positives = 36/61 (59%)
Query: 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPV 138
+L+I D +PGM G+++ + IK S R IPVV+++++ + LE GA + KP
Sbjct: 49 DLIILDIMLPGMDGFEVCQMIKADPSTRHIPVVMLTAKKSTQDRDKGLEAGASAYVTKPF 108
Query: 139 R 139
+
Sbjct: 109 K 109
Score = 51 (23.0 bits), Expect = 3.6e-10, Sum P(2) = 3.6e-10
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDD 61
+L V+D KL LL + Y V V G AL+++ D
Sbjct: 6 ILIVEDEESLLKLESILLSSRGYAVAGVTDGKSALDYIAATPPD 49
>TIGR_CMR|GSU_1117 [details] [associations]
symbol:GSU_1117 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 HSSP:P06143
RefSeq:NP_952170.1 ProteinModelPortal:Q74E47 GeneID:2686890
KEGG:gsu:GSU1117 PATRIC:22024996 OMA:ASNVIMI ProtClustDB:CLSK828188
BioCyc:GSUL243231:GH27-1119-MONOMER Uniprot:Q74E47
Length = 127
Score = 98 (39.6 bits), Expect = 4.9e-10, Sum P(2) = 4.9e-10
Identities = 25/82 (30%), Positives = 44/82 (53%)
Query: 71 NMHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGA 130
N Q+ VN+++TD MP M G L+++ +S ++ ++I + V S I + GA
Sbjct: 44 NYLQQREVNVIVTDINMPEMNGITFLRELNKSFPRSNV-IMITAYGGVESYIE-AMNLGA 101
Query: 131 EEFFLKPVRLSDLNKLKPHLMK 152
E+ KPV+L +L + + K
Sbjct: 102 FEYINKPVKLDELKSILTKIFK 123
Score = 60 (26.2 bits), Expect = 4.9e-10, Sum P(2) = 4.9e-10
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHE 59
+L VDD R + +LL+ ++V +V +G +AL +L E
Sbjct: 9 ILVVDDEENARIGLTKLLEREGFEVASVSNGFEALNYLQQRE 50
>TIGR_CMR|CJE_1664 [details] [associations]
symbol:CJE_1664 "DNA-binding response regulator"
species:195099 "Campylobacter jejuni RM1221" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 RefSeq:YP_179645.1 ProteinModelPortal:Q5HSU0
STRING:Q5HSU0 GeneID:3232292 KEGG:cjr:CJE1664 PATRIC:20045123
OMA:KRNICEL ProtClustDB:CLSK879286
BioCyc:CJEJ195099:GJC0-1694-MONOMER Uniprot:Q5HSU0
Length = 226
Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 29/78 (37%), Positives = 52/78 (66%)
Query: 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPV 138
+LVITD MP M G D+ ++IKE S D+P+V++S+ + R+ R ++ G +++ +KPV
Sbjct: 53 DLVITDIAMPIMDGLDMAREIKEISD--DVPIVVLSAYSEKERLLRSIDIGIDKYLIKPV 110
Query: 139 RLSDLNKLKPHLMKTKIK 156
+ +L K+ +L+ KI+
Sbjct: 111 DIEELFKVLDYLIGEKIE 128
>UNIPROTKB|Q3ADB1 [details] [associations]
symbol:cheY1 "Chemotaxis protein CheY" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0005622 GO:GO:0006935 GO:GO:0004871
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 RefSeq:YP_359873.1 ProteinModelPortal:Q3ADB1
STRING:Q3ADB1 GeneID:3728270 KEGG:chy:CHY_1026 PATRIC:21275187
OMA:GATAWIT BioCyc:CHYD246194:GJCN-1025-MONOMER Uniprot:Q3ADB1
Length = 120
Score = 91 (37.1 bits), Expect = 5.5e-10, Sum P(2) = 5.5e-10
Identities = 17/59 (28%), Positives = 35/59 (59%)
Query: 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137
+L+ITD MP M G ++K++ S+ + PV+++++E+ ++ + GA + KP
Sbjct: 47 DLIITDLNMPEMDGITFIQKVRALSNYKFTPVIVLTTESQAAKKEQARRAGATAWITKP 105
Score = 68 (29.0 bits), Expect = 5.5e-10, Sum P(2) = 5.5e-10
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDD 61
+LA+DDS + I+ L +QV T GS+AL+ LG + D
Sbjct: 4 ILALDDSATMLQSIKISLLRKGHQVATFTKGSEALDMLGKEKFD 47
>TIGR_CMR|CHY_1026 [details] [associations]
symbol:CHY_1026 "chemotaxis protein CheY" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 HOGENOM:HOG000034820 RefSeq:YP_359873.1
ProteinModelPortal:Q3ADB1 STRING:Q3ADB1 GeneID:3728270
KEGG:chy:CHY_1026 PATRIC:21275187 OMA:GATAWIT
BioCyc:CHYD246194:GJCN-1025-MONOMER Uniprot:Q3ADB1
Length = 120
Score = 91 (37.1 bits), Expect = 5.5e-10, Sum P(2) = 5.5e-10
Identities = 17/59 (28%), Positives = 35/59 (59%)
Query: 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137
+L+ITD MP M G ++K++ S+ + PV+++++E+ ++ + GA + KP
Sbjct: 47 DLIITDLNMPEMDGITFIQKVRALSNYKFTPVIVLTTESQAAKKEQARRAGATAWITKP 105
Score = 68 (29.0 bits), Expect = 5.5e-10, Sum P(2) = 5.5e-10
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDD 61
+LA+DDS + I+ L +QV T GS+AL+ LG + D
Sbjct: 4 ILALDDSATMLQSIKISLLRKGHQVATFTKGSEALDMLGKEKFD 47
>TIGR_CMR|GSU_1038 [details] [associations]
symbol:GSU_1038 "sensory box histidine kinase/response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000155 "phosphorelay sensor kinase activity" evidence=ISS]
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR000014 InterPro:IPR001789
InterPro:IPR003594 InterPro:IPR003661 InterPro:IPR004358
InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512 Pfam:PF02518
PRINTS:PR00344 PROSITE:PS50110 SMART:SM00091 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 GO:GO:0005524
GO:GO:0016020 GO:GO:0006355 GO:GO:0035556 GO:GO:0005622
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0023014 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 InterPro:IPR013656 Pfam:PF08448
RefSeq:NP_952091.1 ProteinModelPortal:Q74EC5 GeneID:2688721
KEGG:gsu:GSU1038 PATRIC:22024844 OMA:ECALENA
BioCyc:GSUL243231:GH27-1025-MONOMER Uniprot:Q74EC5
Length = 513
Score = 118 (46.6 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 26/83 (31%), Positives = 44/83 (53%)
Query: 72 MHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAE 131
M +E+ +LV+ D MP M GY I+ +P++IM++ + + I R + GA
Sbjct: 59 MFRELSPDLVLLDIMMPVMDGYGACAAIRGLPGGEHVPIIIMTALDDANSIGRAFDAGAT 118
Query: 132 EFFLKPVRLSDLNKLKPHLMKTK 154
+F KPV LN P+L++ +
Sbjct: 119 DFIEKPVNWMLLNHRLPYLLRAR 141
Score = 76 (31.8 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALE-FLGLHED 60
+L VDD + RK++ L S Y+V + G++A+E F L D
Sbjct: 23 ILLVDDDAVTRKMLRNLFTLSGYRVADAEDGARAVEMFRELSPD 66
>TIGR_CMR|BA_0994 [details] [associations]
symbol:BA_0994 "response regulator" species:198094
"Bacillus anthracis str. Ames" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR001932 Pfam:PF00072 Pfam:PF07228 PROSITE:PS50110
SMART:SM00331 SMART:SM00448 GO:GO:0003824 GO:GO:0006355
GO:GO:0035556 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0008152 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 SUPFAM:SSF81606 HSSP:Q9A5I4
OMA:ERKWGDL RefSeq:NP_843495.1 RefSeq:YP_017622.1
RefSeq:YP_027204.1 ProteinModelPortal:Q81U90 DNASU:1088940
EnsemblBacteria:EBBACT00000010036 EnsemblBacteria:EBBACT00000013718
EnsemblBacteria:EBBACT00000020226 GeneID:1088940 GeneID:2814732
GeneID:2850195 KEGG:ban:BA_0994 KEGG:bar:GBAA_0994 KEGG:bat:BAS0930
HOGENOM:HOG000084736 ProtClustDB:CLSK916048
BioCyc:BANT260799:GJAJ-1008-MONOMER
BioCyc:BANT261594:GJ7F-1053-MONOMER Uniprot:Q81U90
Length = 380
Score = 139 (54.0 bits), Expect = 7.9e-09, P = 7.9e-09
Identities = 28/127 (22%), Positives = 73/127 (57%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQ-VTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEV 76
+L VDD+ ++ +I+++LK + YQ + +++S + E++ +D + H E+
Sbjct: 3 ILIVDDNPVNIFVIKKILKQAGYQDLVSLNSAQELFEYIHFGKDSSR---------HNEI 53
Query: 77 GVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLK 136
+L++ D MP + G ++ +++++ +DIP++ +++ ++++ L+ GA ++ K
Sbjct: 54 --DLILLDIMMPEIDGLEVCRRLQKEEKFKDIPIIFVTALEDANKLAEALDIGAMDYITK 111
Query: 137 PVRLSDL 143
P+ +L
Sbjct: 112 PINKVEL 118
>TIGR_CMR|GSU_1671 [details] [associations]
symbol:GSU_1671 "response regulator/GGDEF domain protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 Pfam:PF00990 GO:GO:0006355 GO:GO:0005622
EMBL:AE017180 GenomeReviews:AE017180_GR SUPFAM:SSF55073
GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160 SMART:SM00267
TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HSSP:P06143 HOGENOM:HOG000167205 RefSeq:NP_952722.1
ProteinModelPortal:Q74CK2 GeneID:2687445 KEGG:gsu:GSU1671
PATRIC:22026193 OMA:IADWLMP ProtClustDB:CLSK740862
BioCyc:GSUL243231:GH27-1671-MONOMER Uniprot:Q74CK2
Length = 322
Score = 102 (41.0 bits), Expect = 8.2e-09, Sum P(3) = 8.2e-09
Identities = 22/69 (31%), Positives = 42/69 (60%)
Query: 80 LVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVR 139
+V+TD+ MP M G +L + I+ S R +++++S++ + + LE GA+E+ +KP
Sbjct: 62 IVMTDWVMPEMDGLELCRAIRADCSGRYTYIILLTSQDSKNDVIAGLEAGADEYLVKPAH 121
Query: 140 LSDL-NKLK 147
+L +LK
Sbjct: 122 QVELLTRLK 130
Score = 76 (31.8 bits), Expect = 8.2e-09, Sum P(3) = 8.2e-09
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 16 FHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALE 53
F +L VDD+ + R ++E LK++ Y V ++G +ALE
Sbjct: 16 FPILIVDDNRLLRTMLETSLKSAGYDVVMAENGKEALE 53
Score = 38 (18.4 bits), Expect = 8.2e-09, Sum P(3) = 8.2e-09
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 218 RKALEEGLSPERTRP-RYNGIATVV 241
R+ L+E LSPE R RY +++
Sbjct: 164 RRYLDERLSPEIKRAYRYERALSLI 188
>UNIPROTKB|P71403 [details] [associations]
symbol:cheY "Chemotaxis protein CheY homolog" species:85962
"Helicobacter pylori 26695" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0005737 GO:GO:0006355 GO:GO:0035556
GO:GO:0046872 GO:GO:0006935 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 EMBL:AE000511
GenomeReviews:AE000511_GR GO:GO:0001539 KO:K03413 EMBL:X81897
EMBL:U97567 EMBL:AF021090 PIR:C64653 RefSeq:NP_207858.1
RefSeq:YP_006934983.1 PDB:3GWG PDB:3H1E PDB:3H1F PDB:3H1G
PDBsum:3GWG PDBsum:3H1E PDBsum:3H1F PDBsum:3H1G
ProteinModelPortal:P71403 DIP:DIP-3256N MINT:MINT-160671
GeneID:13870261 GeneID:899603 KEGG:heo:C694_05515 KEGG:hpy:HP1067
PATRIC:20593473 OMA:DVLITDW ProtClustDB:CLSK872349
EvolutionaryTrace:P71403 Uniprot:P71403
Length = 124
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 26/88 (29%), Positives = 50/88 (56%)
Query: 52 LEFLGLHEDDGQSSHSV--YPNMHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIP 109
L LG +ED ++ H V + + ++ITD+ MP M G DL+KK++ S ++IP
Sbjct: 20 LSRLG-YEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMNGLDLVKKVRSDSRFKEIP 78
Query: 110 VVIMSSENVPSRISRCLEEGAEEFFLKP 137
++++++E + + L+ G + +KP
Sbjct: 79 IIMITTEGGKAEVITALKAGVNNYIVKP 106
>TIGR_CMR|SPO_3037 [details] [associations]
symbol:SPO_3037 "DNA-binding response regulator, LysR
family" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR000847 InterPro:IPR001789
Pfam:PF00072 Pfam:PF00126 PRINTS:PR00039 PROSITE:PS50110
PROSITE:PS50931 SMART:SM00448 GO:GO:0035556 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0003700
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 RefSeq:YP_168241.1
ProteinModelPortal:Q5LP15 DNASU:3195987 GeneID:3195987
KEGG:sil:SPO3037 PATRIC:23379513 Uniprot:Q5LP15
Length = 269
Score = 123 (48.4 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 25/73 (34%), Positives = 48/73 (65%)
Query: 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPV 138
+L++ D MP M GY++ ++IK ++SL DIPV+ ++S + P ++ LE GA +F +P+
Sbjct: 157 DLILLDIRMPDMDGYEVCRQIKSTASLADIPVIFLTSLDDPMDETKGLEMGACDFITRPI 216
Query: 139 RLSDLN-KLKPHL 150
+ L +++ H+
Sbjct: 217 VPAILRARIRSHI 229
Score = 47 (21.6 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFL 55
+L VDD+ + + LLK +Y++ SG AL FL
Sbjct: 115 LLVVDDTPQNIHHLHGLLK-DAYRIIPQTSGKGALSFL 151
>UNIPROTKB|Q8EEQ6 [details] [associations]
symbol:cheY "Chemotaxis signal transduction system response
regulator CheY" species:211586 "Shewanella oneidensis MR-1"
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 OMA:KLANYKF
HSSP:P06143 RefSeq:NP_717910.1 ProteinModelPortal:Q8EEQ6
GeneID:1170042 KEGG:son:SO_2318 PATRIC:23524259 Uniprot:Q8EEQ6
Length = 121
Score = 92 (37.4 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 18/60 (30%), Positives = 35/60 (58%)
Query: 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137
+NL+I+D MP M G LK++K+ + PV+++++E ++ GA+ + +KP
Sbjct: 46 INLIISDVNMPNMDGISFLKEVKKHPRYKFTPVIMLTTEAGRDKMEEGRMAGAKAWVVKP 105
Score = 52 (23.4 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFL 55
+L VDDS R ++ L+ + Y+V G AL L
Sbjct: 4 ILVVDDSASIRHVVSIALRGAGYEVIDACDGKDALSKL 41
>TIGR_CMR|SO_2318 [details] [associations]
symbol:SO_2318 "chemotaxis protein CheY" species:211586
"Shewanella oneidensis MR-1" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
OMA:KLANYKF HSSP:P06143 RefSeq:NP_717910.1
ProteinModelPortal:Q8EEQ6 GeneID:1170042 KEGG:son:SO_2318
PATRIC:23524259 Uniprot:Q8EEQ6
Length = 121
Score = 92 (37.4 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 18/60 (30%), Positives = 35/60 (58%)
Query: 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137
+NL+I+D MP M G LK++K+ + PV+++++E ++ GA+ + +KP
Sbjct: 46 INLIISDVNMPNMDGISFLKEVKKHPRYKFTPVIMLTTEAGRDKMEEGRMAGAKAWVVKP 105
Score = 52 (23.4 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFL 55
+L VDDS R ++ L+ + Y+V G AL L
Sbjct: 4 ILVVDDSASIRHVVSIALRGAGYEVIDACDGKDALSKL 41
>UNIPROTKB|Q8EC92 [details] [associations]
symbol:cheV "Chemotaxis signal transduction system response
regulator CheV" species:211586 "Shewanella oneidensis MR-1"
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 InterPro:IPR002545
Pfam:PF00072 Pfam:PF01584 PROSITE:PS50110 PROSITE:PS50851
SMART:SM00260 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0016740 GO:GO:0005622 GO:GO:0006935 GO:GO:0004871
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P39928 SUPFAM:SSF50341
HOGENOM:HOG000255027 KO:K03415 InterPro:IPR024181 PIRSF:PIRSF002867
OMA:QVSRCLQ RefSeq:NP_718806.1 ProteinModelPortal:Q8EC92
GeneID:1170945 KEGG:son:SO_3252 PATRIC:23526188
ProtClustDB:CLSK2304491 Uniprot:Q8EC92
Length = 306
Score = 133 (51.9 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 37/121 (30%), Positives = 65/121 (53%)
Query: 16 FHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQE 75
+H++ +DDS + RK I R L++ + Q+ T G +AL+ L ++ S N+ E
Sbjct: 179 YHIMVIDDSAVARKQIIRSLESLNLQIDTAKDGREALDKL-------KAIASEMNNVADE 231
Query: 76 VGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFL 135
+ L+I+D MP M GY L +I++ L++I VV+ +S + + + GA +F
Sbjct: 232 IP--LIISDIEMPEMDGYTLTAEIRDDPKLKNIKVVLHTSLSGVFNQAMVQKVGANDFIA 289
Query: 136 K 136
K
Sbjct: 290 K 290
>TIGR_CMR|SO_3252 [details] [associations]
symbol:SO_3252 "chemotaxis protein CheV" species:211586
"Shewanella oneidensis MR-1" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002545 Pfam:PF00072 Pfam:PF01584
PROSITE:PS50110 PROSITE:PS50851 SMART:SM00260 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0016740 GO:GO:0005622
GO:GO:0006935 GO:GO:0004871 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P39928
SUPFAM:SSF50341 HOGENOM:HOG000255027 KO:K03415 InterPro:IPR024181
PIRSF:PIRSF002867 OMA:QVSRCLQ RefSeq:NP_718806.1
ProteinModelPortal:Q8EC92 GeneID:1170945 KEGG:son:SO_3252
PATRIC:23526188 ProtClustDB:CLSK2304491 Uniprot:Q8EC92
Length = 306
Score = 133 (51.9 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 37/121 (30%), Positives = 65/121 (53%)
Query: 16 FHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQE 75
+H++ +DDS + RK I R L++ + Q+ T G +AL+ L ++ S N+ E
Sbjct: 179 YHIMVIDDSAVARKQIIRSLESLNLQIDTAKDGREALDKL-------KAIASEMNNVADE 231
Query: 76 VGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFL 135
+ L+I+D MP M GY L +I++ L++I VV+ +S + + + GA +F
Sbjct: 232 IP--LIISDIEMPEMDGYTLTAEIRDDPKLKNIKVVLHTSLSGVFNQAMVQKVGANDFIA 289
Query: 136 K 136
K
Sbjct: 290 K 290
>TAIR|locus:2008585 [details] [associations]
symbol:ARR11 "response regulator 11" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0009736 "cytokinin mediated signaling pathway"
evidence=RCA;TAS] [GO:0009735 "response to cytokinin stimulus"
evidence=IGI] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 KO:K14491 eggNOG:COG0745 InterPro:IPR017053
PIRSF:PIRSF036392 EMBL:AJ005194 EMBL:AC008113 EMBL:BT008768
EMBL:AB041532 IPI:IPI00521272 PIR:C96700 PIR:T52034 PIR:T52074
RefSeq:NP_176938.1 UniGene:At.121 ProteinModelPortal:Q9FXD6
SMR:Q9FXD6 IntAct:Q9FXD6 STRING:Q9FXD6 EnsemblPlants:AT1G67710.1
GeneID:843096 KEGG:ath:AT1G67710 GeneFarm:3922 TAIR:At1g67710
HOGENOM:HOG000116485 InParanoid:Q9FXD6 OMA:WITRYDE PhylomeDB:Q9FXD6
ProtClustDB:CLSN2914476 Genevestigator:Q9FXD6 GermOnline:AT1G67710
Uniprot:Q9FXD6
Length = 521
Score = 137 (53.3 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 27/81 (33%), Positives = 53/81 (65%)
Query: 77 GVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLK 136
G ++VI+D MP M G+ LL+ + L D+PV++MS + SR+ + ++ GA ++ LK
Sbjct: 56 GYDIVISDVNMPDMDGFKLLEHV--GLEL-DLPVIMMSVDGETSRVMKGVQHGACDYLLK 112
Query: 137 PVRLSDLNKLKPHLMKTKIKD 157
P+R+ +L + H+++ K+++
Sbjct: 113 PIRMKELKIIWQHVLRKKLQE 133
>TIGR_CMR|GSU_2212 [details] [associations]
symbol:GSU_2212 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P06143
RefSeq:NP_953261.1 ProteinModelPortal:Q74AY7 GeneID:2687085
KEGG:gsu:GSU2212 PATRIC:22027279 OMA:SSAMRRQ ProtClustDB:CLSK924580
BioCyc:GSUL243231:GH27-2150-MONOMER Uniprot:Q74AY7
Length = 128
Score = 99 (39.9 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 19/62 (30%), Positives = 34/62 (54%)
Query: 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137
++L++TD MP M G L+ ++ S R +P+ I+++E R L GA + KP
Sbjct: 49 IDLILTDINMPVMDGLKLVSLVRSDPSHRHLPIAIITTEGAAEDRERALALGANAYITKP 108
Query: 138 VR 139
++
Sbjct: 109 IQ 110
Score = 42 (19.8 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 15/45 (33%), Positives = 19/45 (42%)
Query: 18 VLAVDDSIIDRKLIERLLKT-SSYQVTTVDSGSKALEFLGLHEDD 61
VL V+DS R+LI LK + G L+ L H D
Sbjct: 6 VLIVEDSPTMRQLIAFALKRIPGISIVEASDGVDGLKKLSAHAID 50
>UNIPROTKB|Q7D1A8 [details] [associations]
symbol:cheY "Chemotaxis receiver protein" species:176299
"Agrobacterium fabrum str. C58" [GO:0006928 "cellular component
movement" evidence=IGC] [GO:0052143 "chemotaxis on or near host
involved in symbiotic interaction" evidence=IGC] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 GO:GO:0006928 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 EMBL:AE007869 GenomeReviews:AE007869_GR
GO:GO:0052143 KO:K03413 ProtClustDB:CLSK881447 HSSP:P06143
RefSeq:NP_353545.1 ProteinModelPortal:Q7D1A8 STRING:Q7D1A8
GeneID:1132554 KEGG:atu:Atu0516 PATRIC:20810735 OMA:KNDRYRA
Uniprot:Q7D1A8
Length = 121
Score = 92 (37.4 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
Identities = 14/59 (23%), Positives = 37/59 (62%)
Query: 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137
++++TD MP + G+ ++ ++ + R IP++++++E+ + +R + GA + +KP
Sbjct: 48 DVIVTDINMPRLDGFGFIEGVRRNEKYRAIPILVLTTESDAEKKNRARQAGATGWIVKP 106
Score = 50 (22.7 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFL 55
VL VDDS R ++ L + ++ + G + LE L
Sbjct: 5 VLTVDDSRTIRNMLLVTLNNAGFETIQAEDGIEGLEVL 42
>NCBI_NP|NP_353545.1 [details] [associations]
symbol:cheY "chemotaxisreceiverprotein" species:176299
"Agrobacterium fabrum str. C58" [GO:0052143 "chemotaxis on or near
host involved in symbiotic interaction" evidence=IGC] [GO:0006928
"cellular component movement" evidence=IGC] REFSEQ:NC_003062
Ncbi:NP_353545
Length = 121
Score = 92 (37.4 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
Identities = 14/59 (23%), Positives = 37/59 (62%)
Query: 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137
++++TD MP + G+ ++ ++ + R IP++++++E+ + +R + GA + +KP
Sbjct: 48 DVIVTDINMPRLDGFGFIEGVRRNEKYRAIPILVLTTESDAEKKNRARQAGATGWIVKP 106
Score = 50 (22.7 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFL 55
VL VDDS R ++ L + ++ + G + LE L
Sbjct: 5 VLTVDDSRTIRNMLLVTLNNAGFETIQAEDGIEGLEVL 42
>TIGR_CMR|GSU_1285 [details] [associations]
symbol:GSU_1285 "sensory box sensor histidine
kinase/response regulator" species:243231 "Geobacter sulfurreducens
PCA" [GO:0000155 "phosphorelay sensor kinase activity"
evidence=ISS] [GO:0000156 "phosphorelay response regulator
activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR000014
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003661
InterPro:IPR004358 InterPro:IPR008207 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF02518 PRINTS:PR00344
PROSITE:PS50110 PROSITE:PS50112 SMART:SM00091 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 InterPro:IPR001610
GO:GO:0005524 GO:GO:0016020 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0023014
SMART:SM00086 TIGRFAMs:TIGR00229 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0000155 Gene3D:1.10.287.130
Gene3D:3.30.565.10 SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109
SUPFAM:SSF47226 InterPro:IPR013656 Pfam:PF08448 RefSeq:NP_952338.1
PDB:2R78 PDBsum:2R78 ProteinModelPortal:Q74DN1 SMR:Q74DN1
GeneID:2688111 KEGG:gsu:GSU1285 PATRIC:22025341
HOGENOM:HOG000144300 OMA:AHTNSER
BioCyc:GSUL243231:GH27-1253-MONOMER EvolutionaryTrace:Q74DN1
Uniprot:Q74DN1
Length = 772
Score = 138 (53.6 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 37/131 (28%), Positives = 67/131 (51%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVG 77
VL VDDS + RK++ LL++ ++VT G +AL +G D
Sbjct: 548 VLLVDDSAVSRKVVSLLLESDGHRVTFAGDGVEALAAIGREAFD---------------- 591
Query: 78 VNLVITDYCMPGMTGYDLLKKIK--ESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFL 135
LV+ D MP M G++ ++ I+ E++ +P++ +++ + CLE GA+++
Sbjct: 592 --LVLMDVQMPVMDGFEAMRAIRAGEAAGGARLPIIALTARALAGDRELCLEAGADDYLA 649
Query: 136 KPVRLSDLNKL 146
KPV S+L ++
Sbjct: 650 KPVNFSELRRV 660
>TIGR_CMR|CJE_1261 [details] [associations]
symbol:CJE_1261 "chemotaxis protein CheY" species:195099
"Campylobacter jejuni RM1221" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413
OMA:DVLITDW ProtClustDB:CLSK872349 RefSeq:YP_179249.1
ProteinModelPortal:Q5HTY6 STRING:Q5HTY6 GeneID:3231768
KEGG:cjr:CJE1261 PATRIC:20044318
BioCyc:CJEJ195099:GJC0-1287-MONOMER Uniprot:Q5HTY6
Length = 130
Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 28/105 (26%), Positives = 57/105 (54%)
Query: 55 LGLHEDDGQSSHSV--YPNMHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVI 112
LG H+D ++ H V + + + V ++ITD+ MP M G +L+KK++ D+P+++
Sbjct: 23 LG-HDDVLEAEHGVEAWDLLTKNEDVKVLITDWNMPEMNGLELVKKVRAEKKYEDMPIIM 81
Query: 113 MSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMKTKIKD 157
+++E + + L+ G + +KP P ++K K++D
Sbjct: 82 VTTEGGKAEVITALKAGVNNYIVKP--------FTPQVLKEKLED 118
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 32/121 (26%), Positives = 60/121 (49%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQ-VTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEV 76
+L VDDS R++I+ L + V + G +A + L +ED
Sbjct: 3 LLVVDDSSTMRRIIKNTLTRLGHDDVLEAEHGVEAWDLLTKNED---------------- 46
Query: 77 GVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLK 136
V ++ITD+ MP M G +L+KK++ D+P++++++E + + L+ G + +K
Sbjct: 47 -VKVLITDWNMPEMNGLELVKKVRAEKKYEDMPIIMVTTEGGKAEVITALKAGVNNYIVK 105
Query: 137 P 137
P
Sbjct: 106 P 106
>UNIPROTKB|Q55169 [details] [associations]
symbol:rcp1 "Response regulator rcp1" species:1111708
"Synechocystis sp. PCC 6803 substr. Kazusa" [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 EMBL:BA000022 GenomeReviews:BA000022_GR
HOGENOM:HOG000034820 PIR:S74390 RefSeq:NP_442238.1
RefSeq:YP_005652298.1 PDB:1I3C PDB:1JLK PDBsum:1I3C PDBsum:1JLK
ProteinModelPortal:Q55169 SMR:Q55169 IntAct:Q55169 STRING:Q55169
GeneID:12253517 GeneID:952559 KEGG:syn:slr0474 KEGG:syy:SYNGTS_2345
PATRIC:23842114 KO:K11355 OMA:YELHVNC ProtClustDB:CLSK893477
EvolutionaryTrace:Q55169 Uniprot:Q55169
Length = 147
Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 36/131 (27%), Positives = 68/131 (51%)
Query: 18 VLAVDDSIIDRKLIERLLKTSS--YQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQE 75
+L V+DS D +L++ +LKTS+ +++ + G A+ FL + G+ +S PN
Sbjct: 11 ILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFL---QQQGEYENSPRPN---- 63
Query: 76 VGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFL 135
L++ D +P G ++L +IK++ L+ IPVV++++ + + E +
Sbjct: 64 ----LILLDLNLPKKDGREVLAEIKQNPDLKRIPVVVLTTSHNEDDVIASYELHVNCYLT 119
Query: 136 KPVRLSDLNKL 146
K L DL K+
Sbjct: 120 KSRNLKDLFKM 130
>TIGR_CMR|CPS_1520 [details] [associations]
symbol:CPS_1520 "chemotaxis protein CheY" species:167879
"Colwellia psychrerythraea 34H" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 HOGENOM:HOG000034820 OMA:LEANDIY
KO:K03413 RefSeq:YP_268262.1 ProteinModelPortal:Q485K3 SMR:Q485K3
STRING:Q485K3 GeneID:3522501 KEGG:cps:CPS_1520 PATRIC:21466247
BioCyc:CPSY167879:GI48-1601-MONOMER Uniprot:Q485K3
Length = 127
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 32/93 (34%), Positives = 51/93 (54%)
Query: 52 LEFLGLHE-DDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPV 110
L F + E DDG ++ P M Q + V+TD+ MPGM G DLLK I+ ++L IPV
Sbjct: 27 LGFTNIQEADDGNTA---LP-MLQGGDFDFVVTDWNMPGMQGIDLLKAIRADANLSHIPV 82
Query: 111 VIMSSENVPSRISRCLEEGAEEFFLKPVRLSDL 143
+++++E +I + G + +KP + L
Sbjct: 83 LLITAEAKKEQIIMAAQAGVNGYIVKPFTAATL 115
>TIGR_CMR|GSU_2535 [details] [associations]
symbol:GSU_2535 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820
RefSeq:NP_953581.1 ProteinModelPortal:Q74A55 GeneID:2687797
KEGG:gsu:GSU2535 PATRIC:22027919 OMA:DLGCNVY
BioCyc:GSUL243231:GH27-2511-MONOMER Uniprot:Q74A55
Length = 147
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 38/123 (30%), Positives = 62/123 (50%)
Query: 18 VLAVDDSIIDRKLIER-LLKTSSYQ-VTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQE 75
+L VDD +LIE+ L + Q V +D+G +AL+F+ E + + ++ P
Sbjct: 9 ILLVDDDRGHARLIEKHLARMGGMQHVIWLDNGRRALDFI-FEEGEFEGVKTLRPC---- 63
Query: 76 VGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFL 135
LVI D MP + G +L ++K I VVI+++ + P+ I C E G + F
Sbjct: 64 ----LVIADLNMPELGGVHVLSRLKGDERTSSIAVVILTTSDNPAEIEACHELGCDAFLR 119
Query: 136 KPV 138
KP+
Sbjct: 120 KPM 122
>TIGR_CMR|SPO_1023 [details] [associations]
symbol:SPO_1023 "response regulator" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820
RefSeq:YP_166275.1 ProteinModelPortal:Q5LUN0 GeneID:3195651
KEGG:sil:SPO1023 PATRIC:23375339 OMA:AGVSRFM ProtClustDB:CLSK933415
Uniprot:Q5LUN0
Length = 126
Score = 98 (39.6 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 20/60 (33%), Positives = 38/60 (63%)
Query: 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEE-GAEEFFLKP 137
+LVI D +PG +G D+L++++E ++ +D+PV+++++ SR E+ G F KP
Sbjct: 48 DLVILDVMLPGKSGMDILRELREQAATQDLPVLMLTARG-QSRDRDMAEKAGVSRFMTKP 106
Score = 41 (19.5 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFL 55
VL ++D + I LL +QV T G+ A++ +
Sbjct: 5 VLLIEDEPNIAEAIRFLLSRDGWQVETHADGADAVDII 42
>UNIPROTKB|Q52879 [details] [associations]
symbol:cheY1 "CheY1" species:382 "Sinorhizobium meliloti"
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HSSP:P06657 HOGENOM:HOG000034820 EMBL:U13166
GenomeReviews:AL591688_GR PIR:S61833 ProteinModelPortal:Q52879
IntAct:Q52879 PATRIC:23630491 ProtClustDB:CLSK881447 Uniprot:Q52879
Length = 121
Score = 91 (37.1 bits), Expect = 5.0e-08, Sum P(2) = 5.0e-08
Identities = 13/59 (22%), Positives = 38/59 (64%)
Query: 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137
++++TD MP + G+ ++ ++++ R +P++++++E+ + +R + GA + +KP
Sbjct: 48 DVIVTDINMPRLDGFGFIEGVRKNDRYRAVPILVLTTESDAEKKNRARQAGATGWIVKP 106
Score = 49 (22.3 bits), Expect = 5.0e-08, Sum P(2) = 5.0e-08
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDD 61
VL VDDS R ++ L + ++ + G + LE L D
Sbjct: 5 VLTVDDSRTIRNMLLVTLNNAGFETIQAEDGVEGLEKLDTANPD 48
>UNIPROTKB|Q747K4 [details] [associations]
symbol:GSU3261 "Response regulator, putative"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0035556 "intracellular signal transduction" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034820 HSSP:P10957 RefSeq:NP_954302.1
ProteinModelPortal:Q747K4 GeneID:2686384 KEGG:gsu:GSU3261
PATRIC:22029363 OMA:KLPRIDG ProtClustDB:CLSK743192
BioCyc:GSUL243231:GH27-3237-MONOMER Uniprot:Q747K4
Length = 150
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 38/130 (29%), Positives = 63/130 (48%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSY--QVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQE 75
+L V+D+ D L R L + VT V G +AL+FL G S+S +
Sbjct: 6 ILLVEDNPDDEVLTLRALGKHAITPDVTVVRDGVEALDFLF-----GTGSYS---DRDLS 57
Query: 76 VGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFL 135
+ LV+ D +P + G ++L++++ R +PVV+ +S N I C GA +
Sbjct: 58 IMPKLVLLDLKLPKVDGLEVLRRLRADQRTRLLPVVVFTSSNEEQDILECHNLGANSYIR 117
Query: 136 KPVRLSDLNK 145
KPV + L++
Sbjct: 118 KPVDFNQLSE 127
>TIGR_CMR|GSU_3261 [details] [associations]
symbol:GSU_3261 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0005622
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 HSSP:P10957
RefSeq:NP_954302.1 ProteinModelPortal:Q747K4 GeneID:2686384
KEGG:gsu:GSU3261 PATRIC:22029363 OMA:KLPRIDG ProtClustDB:CLSK743192
BioCyc:GSUL243231:GH27-3237-MONOMER Uniprot:Q747K4
Length = 150
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 38/130 (29%), Positives = 63/130 (48%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSY--QVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQE 75
+L V+D+ D L R L + VT V G +AL+FL G S+S +
Sbjct: 6 ILLVEDNPDDEVLTLRALGKHAITPDVTVVRDGVEALDFLF-----GTGSYS---DRDLS 57
Query: 76 VGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFL 135
+ LV+ D +P + G ++L++++ R +PVV+ +S N I C GA +
Sbjct: 58 IMPKLVLLDLKLPKVDGLEVLRRLRADQRTRLLPVVVFTSSNEEQDILECHNLGANSYIR 117
Query: 136 KPVRLSDLNK 145
KPV + L++
Sbjct: 118 KPVDFNQLSE 127
>UNIPROTKB|Q7Y0W3 [details] [associations]
symbol:Q7Y0W3 "Two-component response regulator EHD1"
species:39946 "Oryza sativa Indica Group" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0048576 "positive regulation of short-day
photoperiodism, flowering" evidence=IMP] InterPro:IPR001005
InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 GO:GO:0006351 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009908 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294
eggNOG:NOG265546 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:AB092508
ProteinModelPortal:Q7Y0W3 SMR:Q7Y0W3 KEGG:dosa:Os10t0463400-01
Gramene:Q7Y0W3 HOGENOM:HOG000084878 GO:GO:0048576 Uniprot:Q7Y0W3
Length = 341
Score = 114 (45.2 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 26/80 (32%), Positives = 48/80 (60%)
Query: 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137
V+LVI+D P G +L+++ +S IP VIM+S + + + + GA +F LKP
Sbjct: 57 VDLVISDAFFPTEDGLLILQEV---TSKFGIPTVIMASSGDTNTVMKYVANGAFDFLLKP 113
Query: 138 VRLSDLNKLKPHLMKTKIKD 157
VR+ +L+ + H+ + +++D
Sbjct: 114 VRIEELSNIWQHIFRKQMQD 133
Score = 58 (25.5 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFL 55
VL +DD ++E LL SY+VTT + +A+ F+
Sbjct: 13 VLVIDDDCSYLSVMEDLLLKCSYKVTTYKNVREAVPFI 50
>UNIPROTKB|Q7Y0W5 [details] [associations]
symbol:EHD1 "Two-component response regulator EHD1"
species:39947 "Oryza sativa Japonica Group" [GO:0048576 "positive
regulation of short-day photoperiodism, flowering" evidence=IMP]
InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
GO:GO:0005634 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:DP000086 EMBL:CM000147 GO:GO:0009908 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294
InterPro:IPR017053 PIRSF:PIRSF036392 GO:GO:0048576 EMBL:AB092506
EMBL:AB092507 EMBL:AC027038 ProteinModelPortal:Q7Y0W5
Gramene:Q7Y0W5 eggNOG:KOG1601 Uniprot:Q7Y0W5
Length = 341
Score = 114 (45.2 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 26/80 (32%), Positives = 48/80 (60%)
Query: 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137
V+LVI+D P G +L+++ +S IP VIM+S + + + + GA +F LKP
Sbjct: 57 VDLVISDAFFPTEDGLLILQEV---TSKFGIPTVIMASSGDTNTVMKYVANGAFDFLLKP 113
Query: 138 VRLSDLNKLKPHLMKTKIKD 157
VR+ +L+ + H+ + +++D
Sbjct: 114 VRIEELSNIWQHIFRKQMQD 133
Score = 58 (25.5 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFL 55
VL +DD ++E LL SY+VTT + +A+ F+
Sbjct: 13 VLVIDDDCSYLSVMEDLLLKCSYKVTTYKNVREAVPFI 50
>TIGR_CMR|BA_0996 [details] [associations]
symbol:BA_0996 "sensor histidine kinase/response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000155
"phosphorelay sensor kinase activity" evidence=ISS] [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR003018 InterPro:IPR001789 InterPro:IPR003594
InterPro:IPR003660 InterPro:IPR003661 InterPro:IPR004358
InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512 Pfam:PF00672
Pfam:PF02518 Pfam:PF13185 PRINTS:PR00344 PROSITE:PS50110
PROSITE:PS50885 SMART:SM00065 SMART:SM00304 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 GO:GO:0016021
GO:GO:0005524 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0005622
GO:GO:0023014 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 KO:K03407
HSSP:P52934 RefSeq:NP_843497.1 RefSeq:YP_017624.1
RefSeq:YP_027206.1 ProteinModelPortal:Q81U88 DNASU:1088076
EnsemblBacteria:EBBACT00000011936 EnsemblBacteria:EBBACT00000016656
EnsemblBacteria:EBBACT00000023286 GeneID:1088076 GeneID:2814798
GeneID:2849014 KEGG:ban:BA_0996 KEGG:bar:GBAA_0996 KEGG:bat:BAS0932
HOGENOM:HOG000084747 OMA:TNNVFQE ProtClustDB:CLSK916050
BioCyc:BANT260799:GJAJ-1010-MONOMER
BioCyc:BANT261594:GJ7F-1055-MONOMER InterPro:IPR007891 Pfam:PF05227
Uniprot:Q81U88
Length = 896
Score = 128 (50.1 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 20/72 (27%), Positives = 43/72 (59%)
Query: 72 MHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAE 131
+ ++L++ D MP M GY+ ++ I+ + L +IP++ ++++ +P+ +CL GA
Sbjct: 815 LKNNTNIDLILMDIMMPNMDGYETMEHIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGAS 874
Query: 132 EFFLKPVRLSDL 143
++ KP+ L L
Sbjct: 875 DYISKPLNLHQL 886
Score = 42 (19.8 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFL 55
++ VDD + ++ LK + T +G + LE L
Sbjct: 778 IMIVDDDHRNIFALQNALKKQHANIITAQNGLECLEIL 815
Score = 39 (18.8 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 13 ESQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFL 55
+ Q L + ++ + E KT+ Q+T ++ KA E L
Sbjct: 448 QMQAEELRTTNEQLESRTEEAEQKTADLQITKLELEEKASELL 490
>UNIPROTKB|Q9KRI8 [details] [associations]
symbol:VC_1653 "Sensory box sensor histidine
kinase/response regulator VieS" species:243277 "Vibrio cholerae O1
biovar El Tor str. N16961" [GO:0000155 "phosphorelay sensor kinase
activity" evidence=ISS] [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0023014 "signal transduction
by phosphorylation" evidence=ISS] [GO:0035556 "intracellular signal
transduction" evidence=ISS] InterPro:IPR000014 InterPro:IPR001638
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003661
InterPro:IPR004358 InterPro:IPR008207 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00497 Pfam:PF00512 Pfam:PF01627 Pfam:PF02518
PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50894 SMART:SM00062
SMART:SM00073 SMART:SM00091 SMART:SM00387 SMART:SM00388
SMART:SM00448 InterPro:IPR005467 GO:GO:0005524 GO:GO:0016020
GO:GO:0006355 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005215
GO:GO:0030288 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0000155 Gene3D:1.10.287.130
Gene3D:3.30.565.10 SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109
Gene3D:1.20.120.160 SUPFAM:SSF47226 KO:K07679 HSSP:Q56310
PIR:A82174 RefSeq:NP_231290.1 ProteinModelPortal:Q9KRI8
DNASU:2613784 GeneID:2613784 KEGG:vch:VC1653 PATRIC:20082368
OMA:IGCTANA ProtClustDB:CLSK874479 Uniprot:Q9KRI8
Length = 1146
Score = 133 (51.9 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 42/140 (30%), Positives = 66/140 (47%)
Query: 15 QFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQ 74
Q HVL DD I+R LI++ L T V G +A E L H P +
Sbjct: 917 QGHVLVADDDAINRLLIKKQLSELGLSATLVSDGLQAFEKLSQH-----------PEQY- 964
Query: 75 EVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFF 134
+L+ITD MP + G+ L +K+K+ SL VV ++E+ + L+ G ++
Sbjct: 965 ----DLLITDCHMPHLDGFALTRKVKQEISLFKGAVVGCTAEDSRLAAEQALQAGMDKVI 1020
Query: 135 LKPVRLSDLNKLKPHLMKTK 154
KP L++L K+ + T+
Sbjct: 1021 YKPYTLANLRKVLSRYLTTQ 1040
>TIGR_CMR|VC_1653 [details] [associations]
symbol:VC_1653 "sensory box sensor histidine
kinase/response regulator VieS" species:686 "Vibrio cholerae O1
biovar El Tor" [GO:0000155 "phosphorelay sensor kinase activity"
evidence=ISS] [GO:0000156 "phosphorelay response regulator
activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR000014
InterPro:IPR001638 InterPro:IPR001789 InterPro:IPR003594
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR008207
InterPro:IPR009082 Pfam:PF00072 Pfam:PF00497 Pfam:PF00512
Pfam:PF01627 Pfam:PF02518 PRINTS:PR00344 PROSITE:PS50110
PROSITE:PS50894 SMART:SM00062 SMART:SM00073 SMART:SM00091
SMART:SM00387 SMART:SM00388 SMART:SM00448 InterPro:IPR005467
GO:GO:0005524 GO:GO:0016020 GO:GO:0006355 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005215 GO:GO:0030288 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 Gene3D:1.20.120.160 SUPFAM:SSF47226
KO:K07679 HSSP:Q56310 PIR:A82174 RefSeq:NP_231290.1
ProteinModelPortal:Q9KRI8 DNASU:2613784 GeneID:2613784
KEGG:vch:VC1653 PATRIC:20082368 OMA:IGCTANA ProtClustDB:CLSK874479
Uniprot:Q9KRI8
Length = 1146
Score = 133 (51.9 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 42/140 (30%), Positives = 66/140 (47%)
Query: 15 QFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQ 74
Q HVL DD I+R LI++ L T V G +A E L H P +
Sbjct: 917 QGHVLVADDDAINRLLIKKQLSELGLSATLVSDGLQAFEKLSQH-----------PEQY- 964
Query: 75 EVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFF 134
+L+ITD MP + G+ L +K+K+ SL VV ++E+ + L+ G ++
Sbjct: 965 ----DLLITDCHMPHLDGFALTRKVKQEISLFKGAVVGCTAEDSRLAAEQALQAGMDKVI 1020
Query: 135 LKPVRLSDLNKLKPHLMKTK 154
KP L++L K+ + T+
Sbjct: 1021 YKPYTLANLRKVLSRYLTTQ 1040
>TIGR_CMR|APH_0551 [details] [associations]
symbol:APH_0551 "response regulator/GGDEF domain protein"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 Pfam:PF00990 GO:GO:0006355 GO:GO:0005622
EMBL:CP000235 GenomeReviews:CP000235_GR SUPFAM:SSF55073
GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160 SMART:SM00267
TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG3706 KO:K02488 HOGENOM:HOG000167204
ProtClustDB:PRK09581 RefSeq:YP_505143.1 ProteinModelPortal:Q2GKF8
STRING:Q2GKF8 GeneID:3930248 KEGG:aph:APH_0551 PATRIC:20949762
OMA:VERENDF BioCyc:APHA212042:GHPM-575-MONOMER Uniprot:Q2GKF8
Length = 456
Score = 113 (44.8 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 22/68 (32%), Positives = 42/68 (61%)
Query: 72 MHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSS-ENVPSRISRCLEEGA 130
M +E +L++ D MPGM GY+ K ++ + ++ IP+V++++ +N S L GA
Sbjct: 41 MAEEHQPDLILLDVMMPGMDGYETCKNMRTNPAIAYIPIVMVTALDNTTSNRVNGLSAGA 100
Query: 131 EEFFLKPV 138
++F +KP+
Sbjct: 101 DDFLIKPI 108
Score = 62 (26.9 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDD 61
+L VDD + KL++ L Y V T SG +A+ H+ D
Sbjct: 5 ILIVDDLPSNIKLLQAKLTAEYYTVITATSGPEAIRMAEEHQPD 48
>UNIPROTKB|Q48GG3 [details] [associations]
symbol:cheY2 "Chemotaxis protein CheY" species:264730
"Pseudomonas syringae pv. phaseolicola 1448A" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 GO:GO:0005622
GO:GO:0006935 GO:GO:0004871 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:CP000058 GenomeReviews:CP000058_GR
eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413 RefSeq:YP_275520.1
ProteinModelPortal:Q48GG3 SMR:Q48GG3 STRING:Q48GG3 GeneID:3558182
KEGG:psp:PSPPH_3362 PATRIC:19976130 OMA:GHYDFLV
ProtClustDB:CLSK642753 Uniprot:Q48GG3
Length = 124
Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 28/87 (32%), Positives = 49/87 (56%)
Query: 52 LEFLGLHE-DDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPV 110
L F E DDG ++ P M Q + ++TD+ MPGMTG DLL++++ L+ +PV
Sbjct: 23 LGFTNTSEADDGLTA---LP-MLQSGAFDFLVTDWNMPGMTGIDLLRQVRADERLKSLPV 78
Query: 111 VIMSSENVPSRISRCLEEGAEEFFLKP 137
+++++E +I + G + +KP
Sbjct: 79 LMVTAEAKREQIIEAAQAGVNGYVVKP 105
>UNIPROTKB|Q8EF67 [details] [associations]
symbol:cheY "Chemotaxis signal transduction system response
regulator CheY" species:211586 "Shewanella oneidensis MR-1"
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P06143
OMA:FDVTEAC RefSeq:NP_717723.1 ProteinModelPortal:Q8EF67
GeneID:1169863 KEGG:son:SO_2120 PATRIC:23523858
ProtClustDB:CLSK906601 Uniprot:Q8EF67
Length = 121
Score = 82 (33.9 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALE 53
+L VDDS R+++E LK+++YQVT G +AL+
Sbjct: 5 ILIVDDSAAIRQMVEATLKSANYQVTLAKDGREALD 40
Score = 72 (30.4 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 15/59 (25%), Positives = 32/59 (54%)
Query: 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137
+ ++TD MP M G L+K ++ S+ P++++++E ++ GA + +KP
Sbjct: 48 DFILTDQNMPRMDGLTLIKSLRGMSAFMRTPIIMLTTEAGDDMKAQGKAVGATGWMVKP 106
>TIGR_CMR|SO_2120 [details] [associations]
symbol:SO_2120 "chemotaxis protein CheY" species:211586
"Shewanella oneidensis MR-1" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
HSSP:P06143 OMA:FDVTEAC RefSeq:NP_717723.1
ProteinModelPortal:Q8EF67 GeneID:1169863 KEGG:son:SO_2120
PATRIC:23523858 ProtClustDB:CLSK906601 Uniprot:Q8EF67
Length = 121
Score = 82 (33.9 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALE 53
+L VDDS R+++E LK+++YQVT G +AL+
Sbjct: 5 ILIVDDSAAIRQMVEATLKSANYQVTLAKDGREALD 40
Score = 72 (30.4 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 15/59 (25%), Positives = 32/59 (54%)
Query: 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137
+ ++TD MP M G L+K ++ S+ P++++++E ++ GA + +KP
Sbjct: 48 DFILTDQNMPRMDGLTLIKSLRGMSAFMRTPIIMLTTEAGDDMKAQGKAVGATGWMVKP 106
>TIGR_CMR|GSU_2693 [details] [associations]
symbol:GSU_2693 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820
RefSeq:NP_953738.1 ProteinModelPortal:Q749P9 GeneID:2687548
KEGG:gsu:GSU2693 PATRIC:22028241 OMA:VEMHRAR
BioCyc:GSUL243231:GH27-2669-MONOMER Uniprot:Q749P9
Length = 128
Score = 91 (37.1 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 22/65 (33%), Positives = 34/65 (52%)
Query: 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPV 138
++VITD+ MPGM G +L +KE D+PV++++ E I + G KPV
Sbjct: 49 DMVITDFSMPGMNGLELAAAVKELHP--DLPVMMVTCEVTSDLIEMATDVGICRVLDKPV 106
Query: 139 RLSDL 143
+ L
Sbjct: 107 NVGRL 111
Score = 53 (23.7 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 11/41 (26%), Positives = 25/41 (60%)
Query: 15 QFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFL 55
+ +VL VDD + ++ LL++ +VT+ G++A++ +
Sbjct: 3 RINVLIVDDDVNFLYVLGLLLESKDLEVTSASRGAEAVDIV 43
>UNIPROTKB|Q4KG39 [details] [associations]
symbol:cheY "Chemotaxis protein CheY" species:220664
"Pseudomonas protegens Pf-5" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0005622 GO:GO:0006935
EMBL:CP000076 GenomeReviews:CP000076_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 KO:K03413 OMA:FGFVISD RefSeq:YP_258794.1
ProteinModelPortal:Q4KG39 SMR:Q4KG39 STRING:Q4KG39 GeneID:3477601
KEGG:pfl:PFL_1668 PATRIC:19872565 ProtClustDB:CLSK715044
BioCyc:PFLU220664:GIX8-1676-MONOMER Uniprot:Q4KG39
Length = 123
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 23/78 (29%), Positives = 46/78 (58%)
Query: 60 DDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVP 119
DDG ++ P ++ ++ ++TD+ MPGMTG DLL+ ++ L+ +PV+++++E
Sbjct: 32 DDGTTA---IPVLNSG-SIDFLVTDWNMPGMTGIDLLRHVRADEKLKHLPVLMVTAEAKR 87
Query: 120 SRISRCLEEGAEEFFLKP 137
+I + G + +KP
Sbjct: 88 EQIIEAAQAGVNGYVVKP 105
>TAIR|locus:2163198 [details] [associations]
symbol:TOC1 "TIMING OF CAB EXPRESSION 1" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA;TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;ISS;TAS] [GO:0007623 "circadian rhythm"
evidence=IEP;RCA;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010031 "circumnutation" evidence=IMP] [GO:0006351
"transcription, DNA-dependent" evidence=TAS] [GO:0044212
"transcription regulatory region DNA binding" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0010629 "negative regulation of gene expression"
evidence=IDA] [GO:0009639 "response to red or far red light"
evidence=RCA] [GO:0042752 "regulation of circadian rhythm"
evidence=RCA] [GO:0048574 "long-day photoperiodism, flowering"
evidence=RCA] InterPro:IPR001789 InterPro:IPR010402 Pfam:PF00072
Pfam:PF06203 PROSITE:PS50110 PROSITE:PS51017 SMART:SM00448
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0007623 GO:GO:0003700 GO:GO:0006351
GO:GO:0010629 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
EMBL:AB041530 EMBL:AF272039 EMBL:AJ251086 EMBL:AB010073
EMBL:AY094393 EMBL:BT005816 IPI:IPI00517214 PIR:T52075 PIR:T52076
RefSeq:NP_200946.1 UniGene:At.21919 ProteinModelPortal:Q9LKL2
SMR:Q9LKL2 IntAct:Q9LKL2 STRING:Q9LKL2 EnsemblPlants:AT5G61380.1
GeneID:836259 KEGG:ath:AT5G61380 GeneFarm:4313 TAIR:At5g61380
eggNOG:NOG242953 HOGENOM:HOG000034017 InParanoid:Q9LKL2 KO:K12127
OMA:IPIIMMS PhylomeDB:Q9LKL2 ProtClustDB:CLSN2686914
Genevestigator:Q9LKL2 GermOnline:AT5G61380 GO:GO:0010031
Uniprot:Q9LKL2
Length = 618
Score = 129 (50.5 bits), Expect = 8.4e-07, P = 8.4e-07
Identities = 35/141 (24%), Positives = 67/141 (47%)
Query: 14 SQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMH 73
S+ +L D+ + LL SYQVT V S + ++ L D
Sbjct: 17 SRVRILLCDNDSTSLGEVFTLLSECSYQVTAVKSARQVIDALNAEGPD------------ 64
Query: 74 QEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEF 133
+++++ + +P G +L+ I LR IPV++MS ++ + +CL+ GA ++
Sbjct: 65 ----IDIILAEIDLPMAKGMKMLRYITRDKDLRRIPVIMMSRQDEVPVVVKCLKLGAADY 120
Query: 134 FLKPVRLSDLNKLKPHLMKTK 154
+KP+R ++L L H+ + +
Sbjct: 121 LVKPLRTNELLNLWTHMWRRR 141
>TIGR_CMR|GSU_2287 [details] [associations]
symbol:GSU_2287 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820
RefSeq:NP_953336.1 ProteinModelPortal:Q74AR5 GeneID:2686930
KEGG:gsu:GSU2287 PATRIC:22027433 OMA:HERDMEA
BioCyc:GSUL243231:GH27-2270-MONOMER Uniprot:Q74AR5
Length = 136
Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 38/135 (28%), Positives = 69/135 (51%)
Query: 18 VLAVDDSIIDRKLIERLLKT--SSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQE 75
+L V+D+ + L R+LK + ++ V G +AL +L + E+
Sbjct: 9 MLLVEDNPDEEFLTRRVLKKFPALSRIDVVKDGVEALRYLTVAEN--------------R 54
Query: 76 VGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFL 135
V V+ D +P + G D+L+++++ RDIPVV+++S + + C + GA F
Sbjct: 55 VPPRFVLLDLKLPRVDGVDVLREMRKREETRDIPVVVLTSSDHERDMEACGKLGAAHFLQ 114
Query: 136 KPV---RLSD-LNKL 146
KP+ R+S+ LN+L
Sbjct: 115 KPLDAGRMSEVLNRL 129
>UNIPROTKB|Q9KRN4 [details] [associations]
symbol:VC1602 "Chemotaxis protein CheV" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002545 Pfam:PF00072
Pfam:PF01584 PROSITE:PS50110 PROSITE:PS50851 SMART:SM00260
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 GenomeReviews:AE003852_GR
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 SUPFAM:SSF50341 KO:K03415
OMA:AKWIGIV InterPro:IPR024181 PIRSF:PIRSF002867 HSSP:P04042
EMBL:AE004237 PIR:A82180 RefSeq:NP_231242.1
ProteinModelPortal:Q9KRN4 DNASU:2613858 GeneID:2613858
KEGG:vch:VC1602 PATRIC:20082263 ProtClustDB:CLSK874446
Uniprot:Q9KRN4
Length = 328
Score = 126 (49.4 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 35/120 (29%), Positives = 59/120 (49%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVG 77
++ VDDS R LI+ L ++ Y + G +A E L + +V P E+
Sbjct: 198 IMVVDDSAFIRSLIQDTLSSAGYNIIACKDGGEAHEKL-MELKQAAKEENV-PV--SEL- 252
Query: 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137
++ V+TD MP M G L+K++++ S +P+V+ SS ++ L GA + KP
Sbjct: 253 IDAVVTDVEMPRMDGMHLIKRLRDDDSYSSMPIVMFSSLMSDDNRAKALALGANDTLTKP 312
>TIGR_CMR|VC_1602 [details] [associations]
symbol:VC_1602 "chemotaxis protein CheV" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002545 Pfam:PF00072 Pfam:PF01584
PROSITE:PS50110 PROSITE:PS50851 SMART:SM00260 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GenomeReviews:AE003852_GR GO:GO:0005622
GO:GO:0006935 GO:GO:0004871 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 SUPFAM:SSF50341 KO:K03415 OMA:AKWIGIV
InterPro:IPR024181 PIRSF:PIRSF002867 HSSP:P04042 EMBL:AE004237
PIR:A82180 RefSeq:NP_231242.1 ProteinModelPortal:Q9KRN4
DNASU:2613858 GeneID:2613858 KEGG:vch:VC1602 PATRIC:20082263
ProtClustDB:CLSK874446 Uniprot:Q9KRN4
Length = 328
Score = 126 (49.4 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 35/120 (29%), Positives = 59/120 (49%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVG 77
++ VDDS R LI+ L ++ Y + G +A E L + +V P E+
Sbjct: 198 IMVVDDSAFIRSLIQDTLSSAGYNIIACKDGGEAHEKL-MELKQAAKEENV-PV--SEL- 252
Query: 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137
++ V+TD MP M G L+K++++ S +P+V+ SS ++ L GA + KP
Sbjct: 253 IDAVVTDVEMPRMDGMHLIKRLRDDDSYSSMPIVMFSSLMSDDNRAKALALGANDTLTKP 312
>TAIR|locus:2116587 [details] [associations]
symbol:RR10 "response regulator 10" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0009736 "cytokinin mediated signaling pathway"
evidence=IGI;RCA;TAS] [GO:0009735 "response to cytokinin stimulus"
evidence=IGI] [GO:0010380 "regulation of chlorophyll biosynthetic
process" evidence=IGI] [GO:0031537 "regulation of anthocyanin
metabolic process" evidence=IGI;RCA] [GO:0048367 "shoot system
development" evidence=IGI] [GO:0080022 "primary root development"
evidence=IGI] [GO:0010029 "regulation of seed germination"
evidence=RCA] [GO:0048831 "regulation of shoot system development"
evidence=RCA] InterPro:IPR001005 InterPro:IPR001789
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110
SMART:SM00448 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0003682
GO:GO:0010380 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009736
GO:GO:0080022 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0048367 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491 EMBL:AJ005195
EMBL:AL021636 EMBL:AL161580 EMBL:BT003158 IPI:IPI00544491
PIR:T04653 RefSeq:NP_194920.1 UniGene:At.122 PDB:1IRZ PDBsum:1IRZ
ProteinModelPortal:O49397 SMR:O49397 IntAct:O49397 STRING:O49397
PRIDE:O49397 EnsemblPlants:AT4G31920.1 GeneID:829322
KEGG:ath:AT4G31920 GeneFarm:2450 TAIR:At4g31920 eggNOG:COG2204
HOGENOM:HOG000238840 InParanoid:O49397 OMA:THELHNK PhylomeDB:O49397
ProtClustDB:CLSN2685991 EvolutionaryTrace:O49397
Genevestigator:O49397 GermOnline:AT4G31920 GO:GO:0031537
InterPro:IPR017053 PIRSF:PIRSF036392 Uniprot:O49397
Length = 552
Score = 127 (49.8 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 27/79 (34%), Positives = 51/79 (64%)
Query: 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPV 138
+LVI+D MP M G+ LL+ + D+PV+++S+ + P + + ++ GA ++ LKPV
Sbjct: 64 DLVISDVDMPDMDGFKLLELVGLEM---DLPVIMLSAHSDPKYVMKGVKHGACDYLLKPV 120
Query: 139 RLSDLNKLKPHLM-KTKIK 156
R+ +L + H++ K+K+K
Sbjct: 121 RIEELKNIWQHVVRKSKLK 139
>UNIPROTKB|Q9KQ05 [details] [associations]
symbol:VC_2202 "Chemotaxis protein CheV" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002545 Pfam:PF00072
Pfam:PF01584 PROSITE:PS50110 PROSITE:PS50851 SMART:SM00260
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0006935 GO:GO:0004871
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 SUPFAM:SSF50341
KO:K03415 InterPro:IPR024181 PIRSF:PIRSF002867 OMA:QVSRCLQ
HSSP:P06143 PIR:A82107 RefSeq:NP_231833.1 ProteinModelPortal:Q9KQ05
DNASU:2613242 GeneID:2613242 KEGG:vch:VC2202 PATRIC:20083447
ProtClustDB:CLSK2300370 Uniprot:Q9KQ05
Length = 308
Score = 124 (48.7 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 43/144 (29%), Positives = 69/144 (47%)
Query: 13 ESQF--HVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYP 70
E +F +L DDS + RK ++R +++ ++V T G A E L +G S+ +
Sbjct: 177 EKEFVRRILIADDSSVARKQVQRAIESIGFEVVTTKDGKDAYEKLLEMLSEGPISNQI-- 234
Query: 71 NMHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGA 130
+LVI+D MP M GY L +I+ + L+D+ V++ SS + + GA
Sbjct: 235 --------SLVISDIEMPEMDGYTLTAEIRRHNELKDLYVILHSSLSGVFNQAMVERVGA 286
Query: 131 EEFFLK--PVRLSDLNKLKPHLMK 152
F K P L N +K L+K
Sbjct: 287 NAFIAKFNPDELG--NAVKAALVK 308
>TIGR_CMR|VC_2202 [details] [associations]
symbol:VC_2202 "chemotaxis protein CheV" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002545 Pfam:PF00072 Pfam:PF01584
PROSITE:PS50110 PROSITE:PS50851 SMART:SM00260 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 SUPFAM:SSF50341 KO:K03415
InterPro:IPR024181 PIRSF:PIRSF002867 OMA:QVSRCLQ HSSP:P06143
PIR:A82107 RefSeq:NP_231833.1 ProteinModelPortal:Q9KQ05
DNASU:2613242 GeneID:2613242 KEGG:vch:VC2202 PATRIC:20083447
ProtClustDB:CLSK2300370 Uniprot:Q9KQ05
Length = 308
Score = 124 (48.7 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 43/144 (29%), Positives = 69/144 (47%)
Query: 13 ESQF--HVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYP 70
E +F +L DDS + RK ++R +++ ++V T G A E L +G S+ +
Sbjct: 177 EKEFVRRILIADDSSVARKQVQRAIESIGFEVVTTKDGKDAYEKLLEMLSEGPISNQI-- 234
Query: 71 NMHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGA 130
+LVI+D MP M GY L +I+ + L+D+ V++ SS + + GA
Sbjct: 235 --------SLVISDIEMPEMDGYTLTAEIRRHNELKDLYVILHSSLSGVFNQAMVERVGA 286
Query: 131 EEFFLK--PVRLSDLNKLKPHLMK 152
F K P L N +K L+K
Sbjct: 287 NAFIAKFNPDELG--NAVKAALVK 308
>TIGR_CMR|GSU_0879 [details] [associations]
symbol:GSU_0879 "chemotaxis protein CheV" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002545 Pfam:PF00072 Pfam:PF01584
PROSITE:PS50110 PROSITE:PS50851 SMART:SM00260 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 SUPFAM:SSF50341 KO:K03415
OMA:AKWIGIV InterPro:IPR024181 PIRSF:PIRSF002867 HSSP:P04042
RefSeq:NP_951936.1 ProteinModelPortal:Q74ET0 DNASU:2687281
GeneID:2687281 KEGG:gsu:GSU0879 PATRIC:22024521
HOGENOM:HOG000255028 ProtClustDB:CLSK828077
BioCyc:GSUL243231:GH27-857-MONOMER Uniprot:Q74ET0
Length = 312
Score = 124 (48.7 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 41/138 (29%), Positives = 64/138 (46%)
Query: 14 SQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMH 73
SQ +L DDS R I L+ + Y V ++G A + +D + N+
Sbjct: 180 SQRRILVADDSAFIRNSICSSLRGAGYNVDEAENGEDAWNMI---QDKLTRCRAAGVNLR 236
Query: 74 QEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEF 133
E+ +L+ITD MP M G L +K+ L+D+PV+I SS + + GA +
Sbjct: 237 SEL--DLLITDVEMPKMDGLHLTTLVKKDDVLKDLPVLIFSSLASDDNKRKWKDLGALDI 294
Query: 134 FLKPVRLSDLNKLKPHLM 151
KP L +L K+ +M
Sbjct: 295 VTKP-DLPNLVKIADSVM 311
>UNIPROTKB|Q9A5I5 [details] [associations]
symbol:pleD "Response regulator PleD" species:190650
"Caulobacter crescentus CB15" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 Pfam:PF00990 GO:GO:0005525
GO:GO:0005737 GO:GO:0030154 GO:GO:0006355 GO:GO:0046872
GO:GO:0007049 SUPFAM:SSF55073 UniPathway:UPA00599 GO:GO:0052621
GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160 SMART:SM00267
TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG3706 EMBL:AE005673
GenomeReviews:AE005673_GR KO:K02488 EMBL:L42554 PIR:E87554
RefSeq:NP_421265.1 ProteinModelPortal:Q9A5I5 SMR:Q9A5I5
DIP:DIP-29503N IntAct:Q9A5I5 GeneID:943650 KEGG:ccr:CC_2462
PATRIC:21301956 HOGENOM:HOG000167204 OMA:LAICERN
ProtClustDB:PRK09581 Uniprot:Q9A5I5
Length = 454
Score = 111 (44.1 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 22/61 (36%), Positives = 39/61 (63%)
Query: 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSS-ENVPSRISRCLEEGAEEFFLKP 137
++++ D MPGM G+ + +K+K+ + R IPVV++++ + RI LE GA +F KP
Sbjct: 48 DIILLDVMMPGMDGFTVCRKLKDDPTTRHIPVVLITALDGRGDRIQG-LESGASDFLTKP 106
Query: 138 V 138
+
Sbjct: 107 I 107
Score = 54 (24.1 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKAL 52
+L VDD + +L+E L Y+V+T G AL
Sbjct: 5 ILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTAL 39
>TIGR_CMR|SPO_1953 [details] [associations]
symbol:SPO_1953 "phosphate regulon transcriptional
regulatory protein PhoB" species:246200 "Ruegeria pomeroyi DSS-3"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0006817 "phosphate ion transport" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 InterPro:IPR011879
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0006817 HOGENOM:HOG000034819 KO:K07657
TIGRFAMs:TIGR02154 RefSeq:YP_167188.1 ProteinModelPortal:Q5LS17
GeneID:3193549 KEGG:sil:SPO1953 PATRIC:23377237 OMA:STLMEKP
ProtClustDB:CLSK933701 Uniprot:Q5LS17
Length = 229
Score = 106 (42.4 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 18/65 (27%), Positives = 41/65 (63%)
Query: 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPV 138
++++ D+ MP ++G ++ +++K R IPV+++S+ + R LE GA+++ +KP
Sbjct: 51 DIIVLDWMMPNLSGIEVCRRLKTRPETRSIPVIMLSARSEEVDKVRGLETGADDYVVKPY 110
Query: 139 RLSDL 143
+ +L
Sbjct: 111 SVVEL 115
Score = 50 (22.7 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 9/35 (25%), Positives = 21/35 (60%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKAL 52
VL V+D + R+++ L+ ++V ++G +A+
Sbjct: 8 VLVVEDEMAQREVLAYNLEAEGFRVIRAENGEEAM 42
>TIGR_CMR|NSE_0512 [details] [associations]
symbol:NSE_0512 "response regulator/GGDEF domain protein"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 Pfam:PF00990 GO:GO:0006355 GO:GO:0005622
SUPFAM:SSF55073 GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160
SMART:SM00267 TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG3706 EMBL:CP000237
GenomeReviews:CP000237_GR KO:K02488 HOGENOM:HOG000167204
ProtClustDB:PRK09581 RefSeq:YP_506396.1 ProteinModelPortal:Q2GDQ0
STRING:Q2GDQ0 GeneID:3931788 KEGG:nse:NSE_0512 PATRIC:22681073
OMA:TELGIND BioCyc:NSEN222891:GHFU-532-MONOMER Uniprot:Q2GDQ0
Length = 456
Score = 97 (39.2 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 21/84 (25%), Positives = 49/84 (58%)
Query: 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSEN-VPSRISRCLEEGAEEFFLKP 137
++++ D MP M G++ +++K + IPV+I+++ N + +++ L GA++F +KP
Sbjct: 48 DVILLDVMMPEMDGFETCRRLKSDYATMHIPVIIVTALNDIENKVEG-LNSGADDFLVKP 106
Query: 138 VRLSDLN-KLKPHLMKTKIKDQIK 160
+ L ++K L + D+++
Sbjct: 107 AKDFTLFIRIKSLLRFKTVLDEVR 130
Score = 72 (30.4 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDD 61
+L VDD + K++E L YQV T SG A+E H+ D
Sbjct: 5 ILVVDDIPSNIKILEIKLTAKYYQVITASSGIAAIELAKQHQPD 48
>TIGR_CMR|CBU_1227 [details] [associations]
symbol:CBU_1227 "DNA-binding response regulator"
species:227377 "Coxiella burnetii RSA 493" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034815 KO:K02483 RefSeq:NP_820222.2
ProteinModelPortal:Q83CA1 PRIDE:Q83CA1 GeneID:1209132
KEGG:cbu:CBU_1227 PATRIC:17931191 OMA:THETFDI
ProtClustDB:CLSK914625 BioCyc:CBUR227377:GJ7S-1215-MONOMER
Uniprot:Q83CA1
Length = 232
Score = 121 (47.7 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 31/101 (30%), Positives = 59/101 (58%)
Query: 61 DGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSS-ENVP 119
DGQ++H V + H+ +++I D +P +G D+LK I+E + PVVI+++ + V
Sbjct: 41 DGQAAHDVLSSTHETF--DIIILDLGLPKRSGLDVLKTIREKND--PTPVVILTARDTVD 96
Query: 120 SRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMKTKIKDQIK 160
RI + L+ G++++ KP L +L + M+ + K++ K
Sbjct: 97 DRI-KGLDAGSDDYMTKPFDLEELCA-RMRAMQRRSKERAK 135
>UNIPROTKB|P0AE67 [details] [associations]
symbol:cheY species:83333 "Escherichia coli K-12"
[GO:0006473 "protein acetylation" evidence=IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0000156 "phosphorelay response regulator activity"
evidence=IEA] [GO:0035556 "intracellular signal transduction"
evidence=IEA] [GO:0060286 "flagellar cell motility" evidence=TAS]
[GO:0006935 "chemotaxis" evidence=IEA;IMP;TAS] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0000287 "magnesium ion binding"
evidence=IMP] [GO:0000160 "phosphorelay signal transduction system"
evidence=IEA;IDA] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0005737 GO:GO:0006355 GO:GO:0035556
GO:GO:0000287 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006935 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784 GO:GO:0000160
PDB:1BDJ PDBsum:1BDJ HOGENOM:HOG000034820 GO:GO:0006473
GO:GO:0060286 PDB:1A0O PDB:1EAY PDB:1FFG PDB:1FFS PDB:1FFW PDB:2LP4
PDBsum:1A0O PDBsum:1EAY PDBsum:1FFG PDBsum:1FFS PDBsum:1FFW
PDBsum:2LP4 EMBL:M13463 EMBL:K02175 PIR:E25195 RefSeq:NP_416396.1
RefSeq:YP_490144.1 PDB:1AB5 PDB:1AB6 PDB:1C4W PDB:1CEY PDB:1CHN
PDB:1CYE PDB:1D4Z PDB:1DJM PDB:1E6K PDB:1E6L PDB:1E6M PDB:1EHC
PDB:1F4V PDB:1FQW PDB:1HEY PDB:1JBE PDB:1KMI PDB:1MIH PDB:1U8T
PDB:1UDR PDB:1VLZ PDB:1YMU PDB:1YMV PDB:1ZDM PDB:2B1J PDB:2ID7
PDB:2ID9 PDB:2IDM PDB:3CHY PDB:3F7N PDB:3FFT PDB:3FFW PDB:3FFX
PDB:3FGZ PDB:3MYY PDB:3OLV PDB:3OLW PDB:3OLX PDB:3OLY PDB:3OO0
PDB:3OO1 PDB:3RVJ PDB:3RVK PDB:3RVL PDB:3RVM PDB:3RVN PDB:3RVO
PDB:3RVP PDB:3RVQ PDB:3RVR PDB:3RVS PDB:5CHY PDB:6CHY PDBsum:1AB5
PDBsum:1AB6 PDBsum:1C4W PDBsum:1CEY PDBsum:1CHN PDBsum:1CYE
PDBsum:1D4Z PDBsum:1DJM PDBsum:1E6K PDBsum:1E6L PDBsum:1E6M
PDBsum:1EHC PDBsum:1F4V PDBsum:1FQW PDBsum:1HEY PDBsum:1JBE
PDBsum:1KMI PDBsum:1MIH PDBsum:1U8T PDBsum:1UDR PDBsum:1VLZ
PDBsum:1YMU PDBsum:1YMV PDBsum:1ZDM PDBsum:2B1J PDBsum:2ID7
PDBsum:2ID9 PDBsum:2IDM PDBsum:3CHY PDBsum:3F7N PDBsum:3FFT
PDBsum:3FFW PDBsum:3FFX PDBsum:3FGZ PDBsum:3MYY PDBsum:3OLV
PDBsum:3OLW PDBsum:3OLX PDBsum:3OLY PDBsum:3OO0 PDBsum:3OO1
PDBsum:3RVJ PDBsum:3RVK PDBsum:3RVL PDBsum:3RVM PDBsum:3RVN
PDBsum:3RVO PDBsum:3RVP PDBsum:3RVQ PDBsum:3RVR PDBsum:3RVS
PDBsum:5CHY PDBsum:6CHY ProteinModelPortal:P0AE67 SMR:P0AE67
DIP:DIP-48237N IntAct:P0AE67 SWISS-2DPAGE:P0AE67 PRIDE:P0AE67
EnsemblBacteria:EBESCT00000000750 EnsemblBacteria:EBESCT00000017790
GeneID:12930559 GeneID:946393 KEGG:ecj:Y75_p1858 KEGG:eco:b1882
PATRIC:32119091 EchoBASE:EB0148 EcoGene:EG10150 KO:K03413
OMA:FGFVISD ProtClustDB:PRK10610 BioCyc:EcoCyc:CHEY-MONOMER
BioCyc:ECOL316407:JW1871-MONOMER EvolutionaryTrace:P0AE67
Genevestigator:P0AE67 Uniprot:P0AE67
Length = 129
Score = 107 (42.7 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 29/97 (29%), Positives = 49/97 (50%)
Query: 50 KALEFLGLHE-DDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDI 108
K L F + E +DG + N Q G VI+D+ MP M G +LLK I+ ++ +
Sbjct: 26 KELGFNNVEEAEDGVDAL----NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSAL 81
Query: 109 PVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNK 145
PV+++++E I + GA + +KP + L +
Sbjct: 82 PVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEE 118
>UNIPROTKB|Q74AX6 [details] [associations]
symbol:cheY40H-1 "Response receiver CheY associated with
MCPs of class 40H" species:243231 "Geobacter sulfurreducens PCA"
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P06143
RefSeq:NP_953272.2 ProteinModelPortal:Q74AX6 GeneID:2685646
KEGG:gsu:GSU2223 PATRIC:22027301 OMA:GANEYLV ProtClustDB:CLSK828765
BioCyc:GSUL243231:GH27-2170-MONOMER Uniprot:Q74AX6
Length = 121
Score = 107 (42.7 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 25/69 (36%), Positives = 40/69 (57%)
Query: 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137
++L+ITD MP + G +L+ ++ S + R IP+ I+S+E + L GA E+ +KP
Sbjct: 47 LDLIITDINMPDINGLELVSFVRTSDNYRHIPLFIISTEGSERDREKGLSLGANEYLVKP 106
Query: 138 ---VRLSDL 143
RL DL
Sbjct: 107 FDPARLQDL 115
>TIGR_CMR|GSU_2223 [details] [associations]
symbol:GSU_2223 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
HSSP:P06143 RefSeq:NP_953272.2 ProteinModelPortal:Q74AX6
GeneID:2685646 KEGG:gsu:GSU2223 PATRIC:22027301 OMA:GANEYLV
ProtClustDB:CLSK828765 BioCyc:GSUL243231:GH27-2170-MONOMER
Uniprot:Q74AX6
Length = 121
Score = 107 (42.7 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 25/69 (36%), Positives = 40/69 (57%)
Query: 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137
++L+ITD MP + G +L+ ++ S + R IP+ I+S+E + L GA E+ +KP
Sbjct: 47 LDLIITDINMPDINGLELVSFVRTSDNYRHIPLFIISTEGSERDREKGLSLGANEYLVKP 106
Query: 138 ---VRLSDL 143
RL DL
Sbjct: 107 FDPARLQDL 115
>TAIR|locus:2065398 [details] [associations]
symbol:RR14 "response regulator 14" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009736
"cytokinin mediated signaling pathway" evidence=RCA;TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0042802 "identical
protein binding" evidence=IPI] [GO:0010029 "regulation of seed
germination" evidence=RCA] [GO:0031537 "regulation of anthocyanin
metabolic process" evidence=RCA] [GO:0048831 "regulation of shoot
system development" evidence=RCA] InterPro:IPR001005
InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009736
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491
eggNOG:COG0745 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:AC006069
EMBL:AY099726 EMBL:AY128887 EMBL:AY088149 IPI:IPI00545640
PIR:G84428 RefSeq:NP_178285.1 UniGene:At.42470
ProteinModelPortal:Q8L9Y3 SMR:Q8L9Y3 IntAct:Q8L9Y3 STRING:Q8L9Y3
EnsemblPlants:AT2G01760.1 GeneID:814707 KEGG:ath:AT2G01760
GeneFarm:3930 TAIR:At2g01760 HOGENOM:HOG000034077 InParanoid:Q8L9Y3
OMA:SWILERS PhylomeDB:Q8L9Y3 ProtClustDB:CLSN2913129
Genevestigator:Q8L9Y3 GermOnline:AT2G01760 Uniprot:Q8L9Y3
Length = 382
Score = 123 (48.4 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 24/76 (31%), Positives = 47/76 (61%)
Query: 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPV 138
+LV++D MPGM GY+LL+++ D+PV++MS + + + + GA ++ +KP+
Sbjct: 58 DLVLSDVHMPGMNGYNLLQQVGLLEM--DLPVIMMSVDGRTTTVMTGINHGACDYLIKPI 115
Query: 139 RLSDLNKLKPHLMKTK 154
R +L + H+++ K
Sbjct: 116 RPEELKNIWQHVVRRK 131
>UNIPROTKB|Q3ADA5 [details] [associations]
symbol:cheY2 "Chemotaxis protein CheY" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0005622 GO:GO:0006935 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 KO:K03413 RefSeq:YP_359879.1
ProteinModelPortal:Q3ADA5 STRING:Q3ADA5 GeneID:3726250
KEGG:chy:CHY_1032 PATRIC:21275199 OMA:AGANFYL
BioCyc:CHYD246194:GJCN-1031-MONOMER Uniprot:Q3ADA5
Length = 118
Score = 82 (33.9 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
Identities = 19/60 (31%), Positives = 34/60 (56%)
Query: 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPV 138
+L+ D MP M GY + K++E +PV+++S+E+ + L+ GA + +KPV
Sbjct: 46 DLMTVDVNMPKMDGYTFVYKVREMGV--SLPVILISTESKEHDKLKGLQAGATLYLVKPV 103
Score = 54 (24.1 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALE 53
VL VDDS R+ + + + S++V +G +ALE
Sbjct: 3 VLIVDDSFTVRQYFKEIFQGFSWEVEEAVNGLEALE 38
>TIGR_CMR|CHY_1032 [details] [associations]
symbol:CHY_1032 "chemotaxis protein CheY" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0006935 "chemotaxis" evidence=ISS] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0005622
GO:GO:0006935 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413 RefSeq:YP_359879.1
ProteinModelPortal:Q3ADA5 STRING:Q3ADA5 GeneID:3726250
KEGG:chy:CHY_1032 PATRIC:21275199 OMA:AGANFYL
BioCyc:CHYD246194:GJCN-1031-MONOMER Uniprot:Q3ADA5
Length = 118
Score = 82 (33.9 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
Identities = 19/60 (31%), Positives = 34/60 (56%)
Query: 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPV 138
+L+ D MP M GY + K++E +PV+++S+E+ + L+ GA + +KPV
Sbjct: 46 DLMTVDVNMPKMDGYTFVYKVREMGV--SLPVILISTESKEHDKLKGLQAGATLYLVKPV 103
Score = 54 (24.1 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALE 53
VL VDDS R+ + + + S++V +G +ALE
Sbjct: 3 VLIVDDSFTVRQYFKEIFQGFSWEVEEAVNGLEALE 38
>TIGR_CMR|BA_3067 [details] [associations]
symbol:BA_3067 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P06628
RefSeq:NP_845397.1 RefSeq:YP_019708.1 RefSeq:YP_029111.1
ProteinModelPortal:Q81NV5 DNASU:1088217
EnsemblBacteria:EBBACT00000009080 EnsemblBacteria:EBBACT00000017281
EnsemblBacteria:EBBACT00000021032 GeneID:1088217 GeneID:2817324
GeneID:2850761 KEGG:ban:BA_3067 KEGG:bar:GBAA_3067 KEGG:bat:BAS2853
OMA:LTKEHFF ProtClustDB:CLSK886597
BioCyc:BANT260799:GJAJ-2916-MONOMER
BioCyc:BANT261594:GJ7F-3019-MONOMER Uniprot:Q81NV5
Length = 223
Score = 92 (37.4 bits), Expect = 6.2e-06, Sum P(2) = 6.2e-06
Identities = 22/61 (36%), Positives = 38/61 (62%)
Query: 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSEN-VPSRISRCLEEGAEEFFLK 136
++LV+ D +PG GY + KKIK +IP++ +S+ N + S++ + L G EE+ +K
Sbjct: 46 IDLVVMDVMLPGEDGYQITKKIKNLGL--NIPIIFLSARNDMDSKL-KGLTIG-EEYMIK 101
Query: 137 P 137
P
Sbjct: 102 P 102
Score = 65 (27.9 bits), Expect = 6.2e-06, Sum P(2) = 6.2e-06
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 16 FHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDD 61
+++L V+D +I L++++L+ Y V G K L+ + HE D
Sbjct: 4 YNILIVEDDLIIGDLLQKILQREKYNVYWEKEGRKVLDII--HEID 47
>TIGR_CMR|GSU_1129 [details] [associations]
symbol:GSU_1129 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 HSSP:P06143
RefSeq:NP_952182.1 ProteinModelPortal:Q74E35 GeneID:2687644
KEGG:gsu:GSU1129 PATRIC:22025020 OMA:YEFANII ProtClustDB:CLSK828199
BioCyc:GSUL243231:GH27-1139-MONOMER Uniprot:Q74E35
Length = 453
Score = 105 (42.0 bits), Expect = 6.4e-06, Sum P(2) = 6.4e-06
Identities = 20/65 (30%), Positives = 41/65 (63%)
Query: 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPV 138
++VITD +P +G D+LKK+KE + L ++ ++I + + + + ++EGA ++ KP+
Sbjct: 50 DIVITDLFLPDASGIDILKKVKEDAPLTEV-ILITGHASAETAV-KAMKEGAFDYITKPL 107
Query: 139 RLSDL 143
+L
Sbjct: 108 NFDEL 112
Score = 58 (25.5 bits), Expect = 6.4e-06, Sum P(2) = 6.4e-06
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFL 55
+L +DD R+ + LLK + + V + +GS+A + L
Sbjct: 7 ILLIDDEETGREALTLLLKAAGHAVKSAGAGSEAFQTL 44
>UNIPROTKB|Q0BZW4 [details] [associations]
symbol:pleD "Response regulator PleD" species:228405
"Hyphomonas neptunium ATCC 15444" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0007165 "signal transduction"
evidence=ISS] InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 Pfam:PF00990 GO:GO:0006355
GO:GO:0005622 GO:GO:0004871 SUPFAM:SSF55073 GO:GO:0016849
GO:GO:0009190 InterPro:IPR000160 SMART:SM00267 TIGRFAMs:TIGR00254
PROSITE:PS50887 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG3706 EMBL:CP000158 GenomeReviews:CP000158_GR KO:K02488
HOGENOM:HOG000167204 RefSeq:YP_760979.1 ProteinModelPortal:Q0BZW4
STRING:Q0BZW4 GeneID:4287816 KEGG:hne:HNE_2284 PATRIC:32217411
OMA:APRTINA BioCyc:HNEP228405:GI69-2306-MONOMER Uniprot:Q0BZW4
Length = 455
Score = 105 (42.0 bits), Expect = 6.4e-06, Sum P(2) = 6.4e-06
Identities = 26/80 (32%), Positives = 44/80 (55%)
Query: 74 QEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSS-ENVPSRISRCLEEGAEE 132
Q +++ D MPGM GY++ +++K + IPVV++++ + R+ + L GAE+
Sbjct: 43 QRENPEIILLDVMMPGMDGYEVCQRLKADPTTSYIPVVMVTALSEMEDRV-KGLAAGAED 101
Query: 133 FFLKPVRLSDLNKLKPHLMK 152
F KPV LN LM+
Sbjct: 102 FLTKPVDDFLLNSRITALMR 121
Score = 58 (25.5 bits), Expect = 6.4e-06, Sum P(2) = 6.4e-06
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALE 53
+L VDD +R+L++ L+ + V ++G +ALE
Sbjct: 5 ILVVDDIEANRRLLQAKLEAQYHTVLMAENGPQALE 40
>UNIPROTKB|Q45976 [details] [associations]
symbol:divK "Cell division response regulator DivK"
species:155892 "Caulobacter vibrioides" [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0051301 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:U13765 PIR:S58671 HSSP:Q9A5I4
ProteinModelPortal:Q45976 SMR:Q45976 DIP:DIP-46001N IntAct:Q45976
Uniprot:Q45976
Length = 125
Score = 85 (35.0 bits), Expect = 7.3e-06, Sum P(2) = 7.3e-06
Identities = 18/60 (30%), Positives = 33/60 (55%)
Query: 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPV 138
+L++ D +P ++G ++ K +KE L IPVV +++ + R E G E + KP+
Sbjct: 48 DLILMDIQLPEISGLEVTKWLKEDDDLAHIPVVAVTAFAMKGDEERIREGGCEAYISKPI 107
Score = 53 (23.7 bits), Expect = 7.3e-06, Sum P(2) = 7.3e-06
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDD 61
VL V+D+ ++ KL LL+ Y+ G AL ++ D
Sbjct: 5 VLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENKPD 48
>TIGR_CMR|CHY_1125 [details] [associations]
symbol:CHY_1125 "response regulator" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR005471 Pfam:PF00072 Pfam:PF09339
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
RefSeq:YP_359971.1 ProteinModelPortal:Q3AD13 STRING:Q3AD13
GeneID:3727659 KEGG:chy:CHY_1125 PATRIC:21275390
HOGENOM:HOG000131195 OMA:RNEYLWI ProtClustDB:CLSK289825
BioCyc:CHYD246194:GJCN-1124-MONOMER Uniprot:Q3AD13
Length = 205
Score = 117 (46.2 bits), Expect = 8.1e-06, P = 8.1e-06
Identities = 24/78 (30%), Positives = 46/78 (58%)
Query: 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPV 138
++V+ DY MP + G D +++I+E + +P+++++ + + LE GA +F LKP+
Sbjct: 46 DMVLVDYHMPALDGLDTVERIREID--QGVPIIVLTVDERQQIADKFLEVGASDFALKPI 103
Query: 139 RLSDL-NKLKPHLMKTKI 155
+ DL +LK H +I
Sbjct: 104 KAPDLIARLKVHARMIEI 121
>UNIPROTKB|Q9KRC3 [details] [associations]
symbol:VC_1719 "DNA-binding response regulator TorR"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P08402 KO:K07772
ProtClustDB:PRK10766 PIR:G82164 RefSeq:NP_231355.1
ProteinModelPortal:Q9KRC3 SMR:Q9KRC3 DNASU:2613724 GeneID:2613724
KEGG:vch:VC1719 PATRIC:20082498 OMA:WRISAAR Uniprot:Q9KRC3
Length = 234
Score = 84 (34.6 bits), Expect = 8.2e-06, Sum P(2) = 8.2e-06
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 16 FHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDD 61
+HVL V+D ++ R + + YQVT +SG++ E L L++ D
Sbjct: 3 YHVLVVEDDLVTRSKLSGYFQNEGYQVTEAESGAQMREALELNDID 48
Score = 75 (31.5 bits), Expect = 8.2e-06, Sum P(2) = 8.2e-06
Identities = 19/66 (28%), Positives = 38/66 (57%)
Query: 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137
++LV+ D +PG G L ++++ S + I +V ++++ + LE GA+++ KP
Sbjct: 47 IDLVLLDINLPGEDGLLLTRELRSQSEI-GIILVTGRTDSIDKIVG--LEMGADDYVTKP 103
Query: 138 VRLSDL 143
V L +L
Sbjct: 104 VDLREL 109
>TIGR_CMR|VC_1719 [details] [associations]
symbol:VC_1719 "DNA-binding response regulator TorR"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P08402 KO:K07772
ProtClustDB:PRK10766 PIR:G82164 RefSeq:NP_231355.1
ProteinModelPortal:Q9KRC3 SMR:Q9KRC3 DNASU:2613724 GeneID:2613724
KEGG:vch:VC1719 PATRIC:20082498 OMA:WRISAAR Uniprot:Q9KRC3
Length = 234
Score = 84 (34.6 bits), Expect = 8.2e-06, Sum P(2) = 8.2e-06
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 16 FHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDD 61
+HVL V+D ++ R + + YQVT +SG++ E L L++ D
Sbjct: 3 YHVLVVEDDLVTRSKLSGYFQNEGYQVTEAESGAQMREALELNDID 48
Score = 75 (31.5 bits), Expect = 8.2e-06, Sum P(2) = 8.2e-06
Identities = 19/66 (28%), Positives = 38/66 (57%)
Query: 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137
++LV+ D +PG G L ++++ S + I +V ++++ + LE GA+++ KP
Sbjct: 47 IDLVLLDINLPGEDGLLLTRELRSQSEI-GIILVTGRTDSIDKIVG--LEMGADDYVTKP 103
Query: 138 VRLSDL 143
V L +L
Sbjct: 104 VDLREL 109
>UNIPROTKB|G3LTY8 [details] [associations]
symbol:phoB "Two-component regulator protein" species:636
"Edwardsiella tarda" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001789 InterPro:IPR001867 InterPro:IPR011879
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0006817 TIGRFAMs:TIGR02154
EMBL:JN543949 Uniprot:G3LTY8
Length = 229
Score = 108 (43.1 bits), Expect = 8.3e-06, Sum P(2) = 8.3e-06
Identities = 20/65 (30%), Positives = 40/65 (61%)
Query: 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPV 138
+L++ D+ +PG +G L+K++K + R+IPV+++++ R LE GA+++ KP
Sbjct: 48 DLILLDWMLPGGSGIQLIKQLKREPATREIPVMMLTARGEEEDRVRGLEVGADDYITKPF 107
Query: 139 RLSDL 143
+L
Sbjct: 108 SPKEL 112
Score = 42 (19.8 bits), Expect = 8.3e-06, Sum P(2) = 8.3e-06
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFL 55
+L V+D R ++ +L+ + YQ +S AL L
Sbjct: 5 ILVVEDETPIRDMVSFVLEQNGYQPLEAESYDGALSQL 42
>TIGR_CMR|BA_5504 [details] [associations]
symbol:BA_5504 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_847664.1 RefSeq:YP_022171.1 RefSeq:YP_031352.1
ProteinModelPortal:Q81K35 DNASU:1085148
EnsemblBacteria:EBBACT00000010087 EnsemblBacteria:EBBACT00000018699
EnsemblBacteria:EBBACT00000023974 GeneID:1085148 GeneID:2819097
GeneID:2848975 KEGG:ban:BA_5504 KEGG:bar:GBAA_5504 KEGG:bat:BAS5113
OMA:NMARRVK ProtClustDB:CLSK899140
BioCyc:BANT260799:GJAJ-5188-MONOMER
BioCyc:BANT261594:GJ7F-5366-MONOMER Uniprot:Q81K35
Length = 223
Score = 94 (38.1 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 23/80 (28%), Positives = 47/80 (58%)
Query: 77 GVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLK 136
G +++I D +P GY+LL+ +E RDIPV+++++++ + L+ GA+++ K
Sbjct: 43 GPDVLILDVMLPDTDGYELLRLFREKD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTK 100
Query: 137 PVRLSDLNKLKPHLMKTKIK 156
P ++L L+ M ++K
Sbjct: 101 PFNYAELI-LRVKNMTRRVK 119
Score = 60 (26.2 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALE 53
+L VDD R LI L+ Y+V T G + LE
Sbjct: 3 ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREVLE 38
>TIGR_CMR|GSU_2046 [details] [associations]
symbol:GSU_2046 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 RefSeq:NP_953095.1
ProteinModelPortal:Q74BJ5 GeneID:2687978 KEGG:gsu:GSU2046
PATRIC:22026953 HOGENOM:HOG000129743 OMA:IVWEVVP
ProtClustDB:CLSK828706 BioCyc:GSUL243231:GH27-1956-MONOMER
Uniprot:Q74BJ5
Length = 404
Score = 96 (38.9 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 19/70 (27%), Positives = 40/70 (57%)
Query: 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPV 138
++++ D MPG GY++ +++ +L++ P+++M+ P R + GA++F KP
Sbjct: 48 DVMLIDALMPGSNGYEVCAAVRQDPALKNTPLLLMTGAFEPFDEDRARQCGADDFISKPF 107
Query: 139 RLSDL-NKLK 147
L +K+K
Sbjct: 108 ESQQLVDKVK 117
Score = 66 (28.3 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALE 53
+L DDSI +K++ + +++T VD+G ALE
Sbjct: 5 LLLADDSITIQKVVGIIFANEDFELTVVDNGDAALE 40
>TIGR_CMR|CHY_2047 [details] [associations]
symbol:CHY_2047 "DNA-binding response regulator"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 SUPFAM:SSF46894 RefSeq:YP_360866.1
ProteinModelPortal:Q3AAG8 SMR:Q3AAG8 STRING:Q3AAG8 GeneID:3727851
KEGG:chy:CHY_2047 PATRIC:21277175 KO:K07658 OMA:WGYEFSG
ProtClustDB:CLSK2772343 BioCyc:CHYD246194:GJCN-2046-MONOMER
Uniprot:Q3AAG8
Length = 231
Score = 103 (41.3 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 24/77 (31%), Positives = 46/77 (59%)
Query: 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSS--ENVPSRISRCLEEGAEEFFLK 136
+LVI D +PGM+G ++ K I+ + +IP++++S+ E V + LE GA+++ +K
Sbjct: 46 DLVILDIMLPGMSGLEVCKNIRNNEKTAEIPIIMLSARGEEVDKILG--LELGADDYMVK 103
Query: 137 PVRLSDL-NKLKPHLMK 152
P +L ++K L +
Sbjct: 104 PFSPRELVARVKARLRR 120
Score = 48 (22.0 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFL 55
+L VDD +LI+ L+ Y+V G +ALE +
Sbjct: 3 ILVVDDEAPIVELIKFNLEREGYKVLEAYDGIRALEIV 40
>TIGR_CMR|BA_4920 [details] [associations]
symbol:BA_4920 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 GenomeReviews:AE016879_GR
GenomeReviews:AE017334_GR GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819
SUPFAM:SSF46894 HSSP:P08402 RefSeq:NP_847118.1 RefSeq:YP_021563.2
ProteinModelPortal:Q81KS0 DNASU:1084104
EnsemblBacteria:EBBACT00000011298 EnsemblBacteria:EBBACT00000014550
GeneID:1084104 GeneID:2819868 KEGG:ban:BA_4920 KEGG:bar:GBAA_4920
PATRIC:18787418 OMA:FFVTHPN ProtClustDB:CLSK882384
BioCyc:BANT261594:GJ7F-4779-MONOMER Uniprot:Q81KS0
Length = 229
Score = 102 (41.0 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 22/75 (29%), Positives = 47/75 (62%)
Query: 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPV 138
+L+I D +P M G+++ K+I+ +++DIP++++S++ R L GA+++ KP
Sbjct: 47 DLIILDIMLPKMNGFEICKQIR---AIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPF 103
Query: 139 RLSDL-NKLKPHLMK 152
S+L ++K H+ +
Sbjct: 104 SPSELVARVKAHISR 118
Score = 49 (22.3 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHED 60
+L ++D + +L L+ + +QV SG L+ + L ED
Sbjct: 4 ILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQ-MALQED 45
>TIGR_CMR|CPS_0081 [details] [associations]
symbol:CPS_0081 "response regulator/GGDEF domain protein"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 Pfam:PF00990 GO:GO:0006355 GO:GO:0005622
EMBL:CP000083 GenomeReviews:CP000083_GR SUPFAM:SSF55073
GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160 SMART:SM00267
TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG3706 RefSeq:YP_266849.1
ProteinModelPortal:Q48AR4 STRING:Q48AR4 DNASU:3523347
GeneID:3523347 KEGG:cps:CPS_0081 PATRIC:21463585
HOGENOM:HOG000276492 OMA:CPEEFYC ProtClustDB:CLSK2309571
BioCyc:CPSY167879:GI48-184-MONOMER Uniprot:Q48AR4
Length = 419
Score = 87 (35.7 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 19/64 (29%), Positives = 34/64 (53%)
Query: 74 QEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEF 133
Q + +VITD MP M G +L +I+ + + V+ +S + +R ++ GA++F
Sbjct: 165 QHKNIKMVITDLEMPAMDGIELTNEIRRVYTREQLAVIGISGASNGIHSARFIKNGADDF 224
Query: 134 FLKP 137
KP
Sbjct: 225 LRKP 228
Score = 77 (32.2 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHED 60
+L VDDS R I LLK ++ V T ++G +ALE L H++
Sbjct: 126 ILVVDDSSSARNHIVELLKRRNFNVITANNGVQALEKLAQHKN 168
>TIGR_CMR|CPS_3950 [details] [associations]
symbol:CPS_3950 "response regulator/GGDEF domain protein"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 Pfam:PF00990 Pfam:PF00563 GO:GO:0006355 GO:GO:0005622
EMBL:CP000083 GenomeReviews:CP000083_GR SUPFAM:SSF55073
GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160 SMART:SM00267
TIGRFAMs:TIGR00254 PROSITE:PS50887 Gene3D:3.20.20.450
InterPro:IPR001633 SMART:SM00052 SUPFAM:SSF141868 PROSITE:PS50883
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000136246 RefSeq:YP_270608.1 ProteinModelPortal:Q47X62
STRING:Q47X62 GeneID:3523052 KEGG:cps:CPS_3950 PATRIC:21470787
OMA:NITEVES ProtClustDB:CLSK768238
BioCyc:CPSY167879:GI48-3963-MONOMER Uniprot:Q47X62
Length = 566
Score = 122 (48.0 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 36/119 (30%), Positives = 56/119 (47%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVG 77
VL VDD I+DR+LI+R LK S + S DD N+ Q+
Sbjct: 6 VLIVDDDIVDRELIKRTLKRSDISCNITEVESV---------DDALK------NL-QDSS 49
Query: 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLK 136
+ ++ DY +P G +LL +IK + D V++MS+ C+ GA++F +K
Sbjct: 50 FDAILLDYNLPQRNGIELLLEIKGDPNRHDTAVIMMSTSKEDELALNCINAGAQDFLVK 108
>TIGR_CMR|GSU_0877 [details] [associations]
symbol:GSU_0877 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR009875 Pfam:PF00072 Pfam:PF07238 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 GO:GO:0005622
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0035438 HSSP:P06143
HOGENOM:HOG000276126 RefSeq:NP_951934.1 ProteinModelPortal:Q74ET2
GeneID:2685581 KEGG:gsu:GSU0877 PATRIC:22024519 OMA:PDIDRRE
ProtClustDB:CLSK2522230 BioCyc:GSUL243231:GH27-855-MONOMER
Uniprot:Q74ET2
Length = 248
Score = 97 (39.2 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 21/60 (35%), Positives = 29/60 (48%)
Query: 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPV 138
+LV D MP M G D IK LRD PV+++++ P C G + + KPV
Sbjct: 49 DLVYMDLNMPKMNGVDCCIAIKSDPELRDTPVIMVTTAGKPEDQELCARAGCDGYITKPV 108
Score = 56 (24.8 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDD 61
VL VDD + +L + LL+ S +V T +G +ALE + D
Sbjct: 6 VLIVDDVNLMLELEKSLLRFSPVRVFTARNGEEALELVRSERPD 49
>TAIR|locus:2130095 [details] [associations]
symbol:RR2 "response regulator 2" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0009736 "cytokinin
mediated signaling pathway" evidence=RCA;TAS] [GO:0009723 "response
to ethylene stimulus" evidence=IMP] [GO:0009735 "response to
cytokinin stimulus" evidence=IEP;IGI] [GO:0010150 "leaf senescence"
evidence=IMP] [GO:0009873 "ethylene mediated signaling pathway"
evidence=IMP] [GO:0010119 "regulation of stomatal movement"
evidence=IMP] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0010029 "regulation of seed germination" evidence=RCA]
[GO:0031537 "regulation of anthocyanin metabolic process"
evidence=RCA] [GO:0048831 "regulation of shoot system development"
evidence=RCA] InterPro:IPR001005 InterPro:IPR001789
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110
SMART:SM00448 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0009873 GO:GO:0010119 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0003682 GO:GO:0010150 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:Z97340 EMBL:AL161543 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491
eggNOG:COG2204 InterPro:IPR017053 PIRSF:PIRSF036392
ProtClustDB:CLSN2680844 EMBL:AB016472 EMBL:AJ005196 EMBL:DQ473518
EMBL:DQ473519 EMBL:DQ473520 EMBL:DQ473521 EMBL:AK175378
EMBL:AK175737 EMBL:AK175959 EMBL:AK176614 IPI:IPI00518324
PIR:D71427 PIR:T51247 RefSeq:NP_193346.4 UniGene:At.21955
ProteinModelPortal:Q9ZWJ9 SMR:Q9ZWJ9 IntAct:Q9ZWJ9 STRING:Q9ZWJ9
PaxDb:Q9ZWJ9 PRIDE:Q9ZWJ9 EnsemblPlants:AT4G16110.1 GeneID:827297
KEGG:ath:AT4G16110 GeneFarm:3921 TAIR:At4g16110 InParanoid:Q9ZWJ9
OMA:ILERMLM PhylomeDB:Q9ZWJ9 Genevestigator:Q9ZWJ9
GermOnline:AT4G16110 Uniprot:Q9ZWJ9
Length = 664
Score = 122 (48.0 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 25/78 (32%), Positives = 48/78 (61%)
Query: 77 GVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLK 136
G ++VI+D MP M G+ LL+ + D+PV++MS+++ S + + + GA ++ +K
Sbjct: 73 GFDIVISDVHMPDMDGFKLLEHVGLEM---DLPVIMMSADDSKSVVLKGVTHGAVDYLIK 129
Query: 137 PVRLSDLNKLKPHLMKTK 154
PVR+ L + H+++ K
Sbjct: 130 PVRIEALKNIWQHVVRKK 147
>TIGR_CMR|CPS_1619 [details] [associations]
symbol:CPS_1619 "DNA-binding response regulator"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR009061
InterPro:IPR010093 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0000166 GO:GO:0035556 GO:GO:0003677
GO:GO:0005622 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745 SUPFAM:SSF46955
TIGRFAMs:TIGR01764 ProtClustDB:CLSK741041 RefSeq:YP_268357.1
ProteinModelPortal:Q485A8 STRING:Q485A8 GeneID:3520728
KEGG:cps:CPS_1619 PATRIC:21466431 HOGENOM:HOG000133916 OMA:DEYEIAM
BioCyc:CPSY167879:GI48-1696-MONOMER Uniprot:Q485A8
Length = 185
Score = 113 (44.8 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 20/75 (26%), Positives = 43/75 (57%)
Query: 71 NMHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGA 130
+M +++ +++ D MP + G+ + K I+ + + ++ P++ MS + I + + GA
Sbjct: 103 SMIEKIKPSIIFLDLVMPDIDGFAVCKHIRSNEASKNTPIIAMSGLSQQENIEKVIASGA 162
Query: 131 EEFFLKPVRLSDLNK 145
F +KP+RLS L +
Sbjct: 163 NTFLMKPIRLSVLKQ 177
>UNIPROTKB|Q9KS62 [details] [associations]
symbol:VC_1398 "Chemotaxis protein CheY" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0006935 GO:GO:0004871
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 KO:K03413
OMA:AGANFYL HSSP:P06143 PIR:F82205 RefSeq:NP_231041.1
ProteinModelPortal:Q9KS62 DNASU:2614030 GeneID:2614030
KEGG:vch:VC1398 PATRIC:20081860 ProtClustDB:CLSK794124
Uniprot:Q9KS62
Length = 124
Score = 101 (40.6 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 23/71 (32%), Positives = 41/71 (57%)
Query: 75 EVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFF 134
E+ V+L + D MP M G+ L+++I+ L IP V++S+E+ S + + GA +
Sbjct: 44 EMPVDLFLVDINMPKMDGFTLVREIRCRPELAGIPTVMISTESQESDRQQGIHMGANLYM 103
Query: 135 LKPVRLSDLNK 145
+KPV +L +
Sbjct: 104 VKPVNPEELQQ 114
>TIGR_CMR|VC_1398 [details] [associations]
symbol:VC_1398 "chemotaxis protein CheY" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 KO:K03413 OMA:AGANFYL
HSSP:P06143 PIR:F82205 RefSeq:NP_231041.1 ProteinModelPortal:Q9KS62
DNASU:2614030 GeneID:2614030 KEGG:vch:VC1398 PATRIC:20081860
ProtClustDB:CLSK794124 Uniprot:Q9KS62
Length = 124
Score = 101 (40.6 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 23/71 (32%), Positives = 41/71 (57%)
Query: 75 EVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFF 134
E+ V+L + D MP M G+ L+++I+ L IP V++S+E+ S + + GA +
Sbjct: 44 EMPVDLFLVDINMPKMDGFTLVREIRCRPELAGIPTVMISTESQESDRQQGIHMGANLYM 103
Query: 135 LKPVRLSDLNK 145
+KPV +L +
Sbjct: 104 VKPVNPEELQQ 114
>UNIPROTKB|Q9KSB1 [details] [associations]
symbol:VC_1348 "Response regulator" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS] [GO:0035556
"intracellular signal transduction" evidence=ISS]
InterPro:IPR001789 InterPro:IPR003607 InterPro:IPR006674
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 SMART:SM00471
GO:GO:0006355 GO:GO:0046872 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0008152 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0008081 Gene3D:1.10.3210.10 HSSP:Q9A5I4
KO:K07814 PIR:G82211 RefSeq:NP_230992.1 ProteinModelPortal:Q9KSB1
DNASU:2614802 GeneID:2614802 KEGG:vch:VC1348 PATRIC:20081772
OMA:DNPRSRH ProtClustDB:CLSK794088 Uniprot:Q9KSB1
Length = 441
Score = 120 (47.3 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 25/81 (30%), Positives = 46/81 (56%)
Query: 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137
++LV+ D MP M+GY+++ +IK + IPV+ ++ ++ P E GA ++ KP
Sbjct: 114 IDLVLLDIVMPEMSGYEVINQIKHNPHTEHIPVIFLTGKSNPEDEQLGFELGAVDYVFKP 173
Query: 138 VRLSDL-NKLKPHLMKTKIKD 157
V + L +++ HL + KD
Sbjct: 174 VSIPLLKSRVHTHLQNKRSKD 194
>TIGR_CMR|VC_1348 [details] [associations]
symbol:VC_1348 "response regulator" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR003607 InterPro:IPR006674 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 SMART:SM00471 GO:GO:0006355 GO:GO:0046872
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0008152 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0008081
Gene3D:1.10.3210.10 HSSP:Q9A5I4 KO:K07814 PIR:G82211
RefSeq:NP_230992.1 ProteinModelPortal:Q9KSB1 DNASU:2614802
GeneID:2614802 KEGG:vch:VC1348 PATRIC:20081772 OMA:DNPRSRH
ProtClustDB:CLSK794088 Uniprot:Q9KSB1
Length = 441
Score = 120 (47.3 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 25/81 (30%), Positives = 46/81 (56%)
Query: 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137
++LV+ D MP M+GY+++ +IK + IPV+ ++ ++ P E GA ++ KP
Sbjct: 114 IDLVLLDIVMPEMSGYEVINQIKHNPHTEHIPVIFLTGKSNPEDEQLGFELGAVDYVFKP 173
Query: 138 VRLSDL-NKLKPHLMKTKIKD 157
V + L +++ HL + KD
Sbjct: 174 VSIPLLKSRVHTHLQNKRSKD 194
>UNIPROTKB|Q9KU11 [details] [associations]
symbol:VC_0719 "DNA-binding response regulator PhoB"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR011879 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0003677
EMBL:AE003852 GenomeReviews:AE003852_GR Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0006817 HSSP:P08402 KO:K07657 OMA:QVLEMGP
TIGRFAMs:TIGR02154 PIR:H82288 RefSeq:NP_230368.1
ProteinModelPortal:Q9KU11 SMR:Q9KU11 DNASU:2615728 GeneID:2615728
KEGG:vch:VC0719 PATRIC:20080557 ProtClustDB:CLSK874084
Uniprot:Q9KU11
Length = 229
Score = 109 (43.4 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 27/85 (31%), Positives = 49/85 (57%)
Query: 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPV 138
+LV+ D+ +PG +G +L+K +K R+IPVV++++ R LE GA+++ KP
Sbjct: 48 DLVLLDWMLPGGSGINLIKHMKREEMTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPF 107
Query: 139 RLSDL-NKLKPHLMK---TKIKDQI 159
+L +LK + + T ++D I
Sbjct: 108 SPKELVARLKAVIRRVTPTALEDVI 132
Score = 37 (18.1 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFL 55
+L V+D R+++ +L+ YQ + A+ L
Sbjct: 5 ILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAMSKL 42
>TIGR_CMR|VC_0719 [details] [associations]
symbol:VC_0719 "DNA-binding response regulator PhoB"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 InterPro:IPR011879
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0006817 HSSP:P08402 KO:K07657 OMA:QVLEMGP TIGRFAMs:TIGR02154
PIR:H82288 RefSeq:NP_230368.1 ProteinModelPortal:Q9KU11 SMR:Q9KU11
DNASU:2615728 GeneID:2615728 KEGG:vch:VC0719 PATRIC:20080557
ProtClustDB:CLSK874084 Uniprot:Q9KU11
Length = 229
Score = 109 (43.4 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 27/85 (31%), Positives = 49/85 (57%)
Query: 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPV 138
+LV+ D+ +PG +G +L+K +K R+IPVV++++ R LE GA+++ KP
Sbjct: 48 DLVLLDWMLPGGSGINLIKHMKREEMTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPF 107
Query: 139 RLSDL-NKLKPHLMK---TKIKDQI 159
+L +LK + + T ++D I
Sbjct: 108 SPKELVARLKAVIRRVTPTALEDVI 132
Score = 37 (18.1 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFL 55
+L V+D R+++ +L+ YQ + A+ L
Sbjct: 5 ILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAMSKL 42
>TAIR|locus:2040194 [details] [associations]
symbol:RR12 "response regulator 12" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009736
"cytokinin mediated signaling pathway" evidence=IGI;TAS]
[GO:0009735 "response to cytokinin stimulus" evidence=IGI]
[GO:0010380 "regulation of chlorophyll biosynthetic process"
evidence=IGI] [GO:0031537 "regulation of anthocyanin metabolic
process" evidence=IGI] [GO:0048367 "shoot system development"
evidence=IGI] [GO:0080022 "primary root development" evidence=IGI]
InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0003682 GO:GO:0010380
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009736 GO:GO:0080022
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0048367
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 KO:K14491 eggNOG:COG2204 HOGENOM:HOG000238840
GO:GO:0031537 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:BE522295
IPI:IPI00541861 IPI:IPI01019479 RefSeq:NP_180090.6 UniGene:At.19775
ProteinModelPortal:P62598 SMR:P62598 IntAct:P62598 STRING:P62598
GeneID:817056 KEGG:ath:AT2G25180 GeneFarm:3926 TAIR:At2g25180
InParanoid:P62598 OMA:QQAIMAN ArrayExpress:P62598
Genevestigator:P62598 GermOnline:AT2G25180 Uniprot:P62598
Length = 596
Score = 121 (47.7 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 24/76 (31%), Positives = 48/76 (63%)
Query: 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPV 138
+LVI+D MP M G+ LL+ + D+PV+++S+ + P + + + GA ++ LKPV
Sbjct: 64 DLVISDVDMPDMDGFKLLELVGLEM---DLPVIMLSAHSDPKYVMKGVTHGACDYLLKPV 120
Query: 139 RLSDLNKLKPHLMKTK 154
R+ +L + H+++++
Sbjct: 121 RIEELKNIWQHVVRSR 136
>UNIPROTKB|Q0PBM1 [details] [associations]
symbol:cheV "Chemotaxis protein" species:192222
"Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819"
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR001789
InterPro:IPR002545 Pfam:PF00072 Pfam:PF01584 PROSITE:PS50110
PROSITE:PS50851 SMART:SM00260 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 GO:GO:0016740 GO:GO:0005622 GO:GO:0006935
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 SUPFAM:SSF50341
EMBL:AL111168 GenomeReviews:AL111168_GR PIR:C81447
RefSeq:YP_002343726.1 ProteinModelPortal:Q0PBM1 IntAct:Q0PBM1
MINT:MINT-6484008 DNASU:904609 GeneID:904609 KEGG:cje:Cj0285c
PATRIC:20057489 HOGENOM:HOG000255027 KO:K03415 OMA:AKWIGIV
ProtClustDB:CLSK872487 BioCyc:CJEJ192222:GJTS-264-MONOMER
InterPro:IPR024181 PIRSF:PIRSF002867 Uniprot:Q0PBM1
Length = 318
Score = 118 (46.6 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 35/141 (24%), Positives = 68/141 (48%)
Query: 19 LAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGV 78
L +DDS+ RK ++ +++ +QV G + + L E+ Q +Y + +
Sbjct: 185 LILDDSMTARKRVKEMMQQMGFQVVEAKDGVEGINKL---EELSQ----IYGESLNDT-L 236
Query: 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPV 138
++++D MP M G+ +IKE +DIP+V SS + + ++E E +L
Sbjct: 237 KIIVSDVEMPQMDGFHFAARIKEDPRFKDIPIVFNSSLSNEFMNEKGVQEAGGEGYLVKF 296
Query: 139 RLSDL-NKLKPHLMKTKIKDQ 158
SD N++ + K + ++Q
Sbjct: 297 NASDFFNEIAKVIKKHQSQEQ 317
>TIGR_CMR|CJE_0333 [details] [associations]
symbol:CJE_0333 "chemotaxis protein CheV" species:195099
"Campylobacter jejuni RM1221" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002545 Pfam:PF00072 Pfam:PF01584
PROSITE:PS50110 PROSITE:PS50851 SMART:SM00260 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0016740 GO:GO:0005622
GO:GO:0006935 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 SUPFAM:SSF50341 eggNOG:COG0835
PIR:C81447 HOGENOM:HOG000255027 KO:K03415 OMA:AKWIGIV
ProtClustDB:CLSK872487 InterPro:IPR024181 PIRSF:PIRSF002867
RefSeq:YP_178353.1 ProteinModelPortal:Q5HWI2 STRING:Q5HWI2
GeneID:3231095 KEGG:cjr:CJE0333 PATRIC:20042368
BioCyc:CJEJ195099:GJC0-338-MONOMER Uniprot:Q5HWI2
Length = 318
Score = 118 (46.6 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 35/141 (24%), Positives = 68/141 (48%)
Query: 19 LAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGV 78
L +DDS+ RK ++ +++ +QV G + + L E+ Q +Y + +
Sbjct: 185 LILDDSMTARKRVKEMMQQMGFQVVEAKDGVEGINKL---EELSQ----IYGESLNDT-L 236
Query: 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPV 138
++++D MP M G+ +IKE +DIP+V SS + + ++E E +L
Sbjct: 237 KIIVSDVEMPQMDGFHFAARIKEDPRFKDIPIVFNSSLSNEFMNEKGVQEAGGEGYLVKF 296
Query: 139 RLSDL-NKLKPHLMKTKIKDQ 158
SD N++ + K + ++Q
Sbjct: 297 NASDFFNEIAKVIKKHQSQEQ 317
>UNIPROTKB|P0AFJ5 [details] [associations]
symbol:phoB "PhoB transcriptional dual regulator"
species:83333 "Escherichia coli K-12" [GO:0000156 "phosphorelay
response regulator activity" evidence=IEA] [GO:0035556
"intracellular signal transduction" evidence=IEA] [GO:0001108
"bacterial-type RNA polymerase holo enzyme binding" evidence=IMP]
[GO:2000142 "regulation of DNA-dependent transcription, initiation"
evidence=IDA] [GO:0006817 "phosphate ion transport" evidence=IEA]
[GO:0006810 "transport" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000160
"phosphorelay signal transduction system" evidence=IEA]
InterPro:IPR001789 InterPro:IPR001867 InterPro:IPR011879
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0005737 GO:GO:0035556 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 EMBL:U73857
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0006817
eggNOG:COG0745 HOGENOM:HOG000034819 GO:GO:0001108 EMBL:X04026
PIR:A24256 RefSeq:NP_414933.1 RefSeq:YP_488691.1 PDB:1B00 PDB:1GXP
PDB:1GXQ PDB:1QQI PDB:1ZES PDB:2IYN PDB:2JB9 PDB:2JBA PDB:2Z33
PDB:3T72 PDBsum:1B00 PDBsum:1GXP PDBsum:1GXQ PDBsum:1QQI
PDBsum:1ZES PDBsum:2IYN PDBsum:2JB9 PDBsum:2JBA PDBsum:2Z33
PDBsum:3T72 ProteinModelPortal:P0AFJ5 SMR:P0AFJ5 DIP:DIP-35852N
IntAct:P0AFJ5 MINT:MINT-1313174 EnsemblBacteria:EBESCT00000002796
EnsemblBacteria:EBESCT00000016242 GeneID:12930822 GeneID:945046
KEGG:ecj:Y75_p0387 KEGG:eco:b0399 PATRIC:32115943 EchoBASE:EB0721
EcoGene:EG10728 KO:K07657 OMA:QVLEMGP ProtClustDB:PRK10161
BioCyc:EcoCyc:PHOB-MONOMER BioCyc:ECOL316407:JW0389-MONOMER
EvolutionaryTrace:P0AFJ5 Genevestigator:P0AFJ5 GO:GO:2000142
TIGRFAMs:TIGR02154 Uniprot:P0AFJ5
Length = 229
Score = 115 (45.5 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 24/73 (32%), Positives = 40/73 (54%)
Query: 71 NMHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGA 130
N E +L++ D+ +PG +G +K +K S RDIPVV++++ R LE GA
Sbjct: 40 NQLNEPWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGA 99
Query: 131 EEFFLKPVRLSDL 143
+++ KP +L
Sbjct: 100 DDYITKPFSPKEL 112
>UNIPROTKB|Q48P87 [details] [associations]
symbol:pilG "Type IV pilus response regulator PilG"
species:264730 "Pseudomonas syringae pv. phaseolicola 1448A"
[GO:0009297 "pilus assembly" evidence=ISS] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:CP000058 GenomeReviews:CP000058_GR
eggNOG:COG0784 HOGENOM:HOG000034820 GO:GO:0009297
RefSeq:YP_272782.1 ProteinModelPortal:Q48P87 STRING:Q48P87
GeneID:3558225 KEGG:psp:PSPPH_0479 PATRIC:19969990 KO:K02657
OMA:CDILMPR ProtClustDB:CLSK821914 Uniprot:Q48P87
Length = 136
Score = 82 (33.9 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 18/72 (25%), Positives = 38/72 (52%)
Query: 80 LVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVR 139
++ D MP + GY IK + + + PV+++SS++ ++ G+++F KP
Sbjct: 54 IIFVDIMMPRLDGYQTCALIKNNRAFKSTPVIMLSSKDGLFDKAKGRIVGSDQFLTKPFS 113
Query: 140 LSDL-NKLKPHL 150
+L + +K H+
Sbjct: 114 KEELLSAIKAHV 125
Score = 59 (25.8 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 14 SQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKAL 52
S V+ +DDS R+ E LLK + +V T G AL
Sbjct: 6 SALKVMVIDDSKTIRRTAETLLKNAGCEVITAIDGFDAL 44
>ASPGD|ASPL0000016988 [details] [associations]
symbol:srrC species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0000156
"phosphorelay response regulator activity" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0000160 "phosphorelay signal transduction system"
evidence=IEA] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 GO:GO:0005622
EMBL:BN001302 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 EMBL:AACD01000067 RefSeq:XP_661738.1
ProteinModelPortal:Q5B5P6 EnsemblFungi:CADANIAT00004538
GeneID:2873550 KEGG:ani:AN4134.2 HOGENOM:HOG000200821
OrthoDB:EOG412QGQ Uniprot:Q5B5P6
Length = 171
Score = 110 (43.8 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 38/147 (25%), Positives = 66/147 (44%)
Query: 17 HVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEV 76
H+L +D+ +++KL+ RLL+ S V+ +G +AL++L S P H
Sbjct: 3 HILVAEDNKVNQKLVTRLLQRLSCTVSIAHNGQEALDYL-----------SASPATHHRP 51
Query: 77 GVNLVITDYCMPGMTGYDLLKKIKES------SSLRDIPVVIMS--SENVPSRISRCLEE 128
V ++ D MP M G ++ S + P++ M+ S VP + L+
Sbjct: 52 DV--ILMDTAMPVMDGIRATSILRTSLPFTVDPKIPTTPIIAMTPISLRVPGQTEEWLKR 109
Query: 129 GAEEFFLKPVRLSDLNKLKPHLMKTKI 155
G ++ KP RL L + + K +I
Sbjct: 110 GFDDVLPKPFRLETLRMMLLYWSKRRI 136
>TIGR_CMR|DET_0135 [details] [associations]
symbol:DET_0135 "DNA-binding response regulator"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034819 KO:K02483
RefSeq:YP_180885.1 ProteinModelPortal:Q3ZA64 STRING:Q3ZA64
GeneID:3230499 KEGG:det:DET0135 PATRIC:21607359 OMA:CYNLAKE
ProtClustDB:CLSK837603 BioCyc:DETH243164:GJNF-135-MONOMER
Uniprot:Q3ZA64
Length = 230
Score = 100 (40.3 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 22/87 (25%), Positives = 53/87 (60%)
Query: 72 MHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAE 131
M++ +LVI D +PGM G++L + I+ SS +P++++++ + + LE GA+
Sbjct: 42 MYRRFKPSLVILDVMLPGMDGFELCRLIRAESS---VPILMLTARSSETDKVNGLEVGAD 98
Query: 132 EFFLKPVRLSDL-NKLKPHLMKTKIKD 157
++ KP + +L +++ L ++++++
Sbjct: 99 DYLSKPFGMKELLARMRALLRRSQMQN 125
Score = 48 (22.0 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKAL 52
+L V+D R+L+ L YQ+ + G KAL
Sbjct: 6 ILVVEDDATLRELLCYNLAKEGYQLECAEDGLKAL 40
>TAIR|locus:2093668 [details] [associations]
symbol:RR1 "response regulator 1" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0009736 "cytokinin mediated signaling pathway"
evidence=IGI;RCA;TAS] [GO:0009735 "response to cytokinin stimulus"
evidence=IGI;IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010380 "regulation of chlorophyll biosynthetic process"
evidence=IGI] [GO:0031537 "regulation of anthocyanin metabolic
process" evidence=IGI;RCA] [GO:0048367 "shoot system development"
evidence=IGI] [GO:0080022 "primary root development" evidence=IGI]
[GO:0006487 "protein N-linked glycosylation" evidence=RCA]
[GO:0006635 "fatty acid beta-oxidation" evidence=RCA] [GO:0010029
"regulation of seed germination" evidence=RCA] [GO:0010043
"response to zinc ion" evidence=RCA] [GO:0016558 "protein import
into peroxisome matrix" evidence=RCA] [GO:0048831 "regulation of
shoot system development" evidence=RCA] InterPro:IPR001005
InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0003682 GO:GO:0010380 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0009736 GO:GO:0080022 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0048367 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491 eggNOG:COG0745
GO:GO:0031537 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:AB016471
EMBL:AP001308 EMBL:AB028608 EMBL:AY056099 EMBL:AK316883
IPI:IPI00534841 IPI:IPI00547650 PIR:T51246 RefSeq:NP_566561.2
RefSeq:NP_850600.2 UniGene:At.183 UniGene:At.48672
ProteinModelPortal:Q940D0 SMR:Q940D0 IntAct:Q940D0 STRING:Q940D0
PaxDb:Q940D0 PRIDE:Q940D0 EnsemblPlants:AT3G16857.2 GeneID:820940
KEGG:ath:AT3G16857 GeneFarm:3920 TAIR:At3g16857
HOGENOM:HOG000034078 InParanoid:Q940D0 OMA:RTCLYEV PhylomeDB:Q940D0
ProtClustDB:CLSN2680844 Genevestigator:Q940D0 GermOnline:AT3G16857
Uniprot:Q940D0
Length = 690
Score = 119 (46.9 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 24/78 (30%), Positives = 48/78 (61%)
Query: 77 GVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLK 136
G ++VI+D MP M G+ LL+ + D+PV++MS+++ S + + + GA ++ +K
Sbjct: 82 GFDIVISDVHMPDMDGFKLLEHVGLEM---DLPVIMMSADDSKSVVLKGVTHGAVDYLIK 138
Query: 137 PVRLSDLNKLKPHLMKTK 154
PVR+ L + H+++ +
Sbjct: 139 PVRMEALKNIWQHVVRKR 156
>TAIR|locus:2155954 [details] [associations]
symbol:APRR4 "pseudo-response regulator 4" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS]
InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0035556 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 EMBL:AB016872 IPI:IPI00535768 RefSeq:NP_199735.1
UniGene:At.55447 ProteinModelPortal:Q9FJ16 SMR:Q9FJ16
EnsemblPlants:AT5G49240.1 GeneID:834984 KEGG:ath:AT5G49240
GeneFarm:4344 TAIR:At5g49240 eggNOG:NOG265546 HOGENOM:HOG000029456
InParanoid:Q9FJ16 KO:K14491 OMA:SEIGSEM PhylomeDB:Q9FJ16
ProtClustDB:CLSN2916474 Genevestigator:Q9FJ16 GermOnline:AT5G49240
Uniprot:Q9FJ16
Length = 292
Score = 99 (39.9 bits), Expect = 5.4e-05, Sum P(2) = 5.4e-05
Identities = 18/65 (27%), Positives = 40/65 (61%)
Query: 94 DLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMKT 153
D+ + + E S D+P++I+S ++ + + + GA ++ +KP+R DL + HL+K
Sbjct: 101 DIFRFLSEIGSEMDLPIIIISEDDSVKSVKKWMINGAADYLIKPIRPEDLRIVFKHLVK- 159
Query: 154 KIKDQ 158
K++++
Sbjct: 160 KMRER 164
Score = 51 (23.0 bits), Expect = 5.4e-05, Sum P(2) = 5.4e-05
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHED 60
VL D+ ++ER L+ YQVT + +KA+ L H +
Sbjct: 44 VLVFDEDPSYLLILERHLQKFQYQVTICNEVNKAMHTLRNHRN 86
>UNIPROTKB|Q74DM7 [details] [associations]
symbol:cheY34H-1 "Response receiver CheY associated with
MCPs of class 34H" species:243231 "Geobacter sulfurreducens PCA"
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P08402
RefSeq:NP_952342.1 ProteinModelPortal:Q74DM7 GeneID:2688101
KEGG:gsu:GSU1289 PATRIC:22025351 OMA:FDVTEAC ProtClustDB:CLSK828284
BioCyc:GSUL243231:GH27-1257-MONOMER Uniprot:Q74DM7
Length = 121
Score = 97 (39.2 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137
V++VITD MP + G L+K ++ + + R P+V++++E+ SR GA + +KP
Sbjct: 47 VDMVITDLNMPNLDGIGLIKGVRANPTYRFTPIVMLTTESQESRKQEGKAAGATGWIVKP 106
Query: 138 VRLSDL 143
+ L
Sbjct: 107 FKPEQL 112
>TIGR_CMR|GSU_1289 [details] [associations]
symbol:GSU_1289 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
HSSP:P08402 RefSeq:NP_952342.1 ProteinModelPortal:Q74DM7
GeneID:2688101 KEGG:gsu:GSU1289 PATRIC:22025351 OMA:FDVTEAC
ProtClustDB:CLSK828284 BioCyc:GSUL243231:GH27-1257-MONOMER
Uniprot:Q74DM7
Length = 121
Score = 97 (39.2 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137
V++VITD MP + G L+K ++ + + R P+V++++E+ SR GA + +KP
Sbjct: 47 VDMVITDLNMPNLDGIGLIKGVRANPTYRFTPIVMLTTESQESRKQEGKAAGATGWIVKP 106
Query: 138 VRLSDL 143
+ L
Sbjct: 107 FKPEQL 112
>TIGR_CMR|CPS_3065 [details] [associations]
symbol:CPS_3065 "DNA-binding response regulator"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034819
RefSeq:YP_269763.1 ProteinModelPortal:Q47ZK7 STRING:Q47ZK7
GeneID:3520016 KEGG:cps:CPS_3065 PATRIC:21469133
ProtClustDB:CLSK938167 BioCyc:CPSY167879:GI48-3114-MONOMER
Uniprot:Q47ZK7
Length = 237
Score = 91 (37.1 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 23/86 (26%), Positives = 51/86 (59%)
Query: 72 MHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSS-ENVPSRISRCLEEGA 130
M +++ +L++ D +PG+ G++L K+ +E + P++++++ E+ S +S L+ GA
Sbjct: 51 MIKKLSPDLILLDLMLPGVDGFELCKQARE---FYNGPIIVLTAMEDDLSEVS-LLKLGA 106
Query: 131 EEFFLKPVRLSDLNKLKPHLMKTKIK 156
+++ KP KPH+M +I+
Sbjct: 107 DDYLRKPA--------KPHIMSARIE 124
Score = 58 (25.5 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 11/41 (26%), Positives = 23/41 (56%)
Query: 15 QFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFL 55
+ H+L ++D +L E L+++ Y+ T + GS A+ +
Sbjct: 12 KMHILIIEDDKEIARLTEIYLQSTGYETTIIADGSLAIAMI 52
>UNIPROTKB|Q74CL9 [details] [associations]
symbol:GSU1654 "Response receiver-modulated cyclic
diguanylate phosphodiesterase" species:243231 "Geobacter
sulfurreducens PCA" [GO:0003674 "molecular_function" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR001789
InterPro:IPR003607 InterPro:IPR006674 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 SMART:SM00471 GO:GO:0006355 GO:GO:0035556
GO:GO:0046872 GO:GO:0008152 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0008081 Gene3D:1.10.3210.10
InterPro:IPR006675 TIGRFAMs:TIGR00277 HOGENOM:HOG000266481
RefSeq:NP_952705.1 ProteinModelPortal:Q74CL9 GeneID:2687011
KEGG:gsu:GSU1654 PATRIC:22026155 OMA:IVLSHQE ProtClustDB:CLSK828468
BioCyc:GSUL243231:GH27-1639-MONOMER Uniprot:Q74CL9
Length = 349
Score = 108 (43.1 bits), Expect = 6.0e-05, Sum P(2) = 6.0e-05
Identities = 27/79 (34%), Positives = 46/79 (58%)
Query: 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137
V L + D MPG +G DLLK+IK+ S+ D V+++++ + RC+ GA+++ LKP
Sbjct: 47 VELALLDIMMPGTSGVDLLKEIKKISA--DTVVLMVTAISDMETAMRCIHLGADDYILKP 104
Query: 138 VRLSD-LNKLKPHLMKTKI 155
+ L +K L K ++
Sbjct: 105 FDIERVLLTIKNSLEKQRL 123
Score = 41 (19.5 bits), Expect = 6.0e-05, Sum P(2) = 6.0e-05
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFL 55
+L VDD + R L+ L Y S +A + L
Sbjct: 5 ILTVDDEEMIRDLLVTALSREGYDCFQAGSADEARDVL 42
>TIGR_CMR|GSU_1654 [details] [associations]
symbol:GSU_1654 "response regulator, putative"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001789 InterPro:IPR003607
InterPro:IPR006674 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
SMART:SM00471 GO:GO:0006355 GO:GO:0035556 GO:GO:0046872
GO:GO:0008152 GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0008081
Gene3D:1.10.3210.10 InterPro:IPR006675 TIGRFAMs:TIGR00277
HOGENOM:HOG000266481 RefSeq:NP_952705.1 ProteinModelPortal:Q74CL9
GeneID:2687011 KEGG:gsu:GSU1654 PATRIC:22026155 OMA:IVLSHQE
ProtClustDB:CLSK828468 BioCyc:GSUL243231:GH27-1639-MONOMER
Uniprot:Q74CL9
Length = 349
Score = 108 (43.1 bits), Expect = 6.0e-05, Sum P(2) = 6.0e-05
Identities = 27/79 (34%), Positives = 46/79 (58%)
Query: 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137
V L + D MPG +G DLLK+IK+ S+ D V+++++ + RC+ GA+++ LKP
Sbjct: 47 VELALLDIMMPGTSGVDLLKEIKKISA--DTVVLMVTAISDMETAMRCIHLGADDYILKP 104
Query: 138 VRLSD-LNKLKPHLMKTKI 155
+ L +K L K ++
Sbjct: 105 FDIERVLLTIKNSLEKQRL 123
Score = 41 (19.5 bits), Expect = 6.0e-05, Sum P(2) = 6.0e-05
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFL 55
+L VDD + R L+ L Y S +A + L
Sbjct: 5 ILTVDDEEMIRDLLVTALSREGYDCFQAGSADEARDVL 42
>UNIPROTKB|Q9KUA1 [details] [associations]
symbol:VC_0622 "Sensory box sensor histidine
kinase/response regulator" species:243277 "Vibrio cholerae O1
biovar El Tor str. N16961" [GO:0000155 "phosphorelay sensor kinase
activity" evidence=ISS] [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0023014 "signal transduction
by phosphorylation" evidence=ISS] [GO:0035556 "intracellular signal
transduction" evidence=ISS] InterPro:IPR000014 InterPro:IPR001789
InterPro:IPR003594 InterPro:IPR003660 InterPro:IPR003661
InterPro:IPR004358 InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512
Pfam:PF00672 Pfam:PF02518 Pfam:PF13188 PRINTS:PR00344
PROSITE:PS50110 PROSITE:PS50885 SMART:SM00091 SMART:SM00304
SMART:SM00387 SMART:SM00388 SMART:SM00448 InterPro:IPR005467
GO:GO:0016021 GO:GO:0005524 GO:GO:0006355 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 HSSP:P08402 PIR:A82300
RefSeq:NP_230271.1 ProteinModelPortal:Q9KUA1 DNASU:2615410
GeneID:2615410 KEGG:vch:VC0622 PATRIC:20080353 OMA:SLYVSSQ
ProtClustDB:CLSK874044 Uniprot:Q9KUA1
Length = 1177
Score = 120 (47.3 bits), Expect = 6.9e-05, P = 6.9e-05
Identities = 28/104 (26%), Positives = 52/104 (50%)
Query: 52 LEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVV 111
L G Q H V + +E LV+ D MPGM+GY + +K++++ ++P++
Sbjct: 789 LRLEGYRVHTAQDGHQVLEAIKREKP-ELVLLDIMMPGMSGYQVCEKLRQTYDHAELPII 847
Query: 112 IMSSENVPSRISRCLEEGAEEFFLKPVRLSDLN-KLKPHLMKTK 154
++++ N R E GA ++ KP +L ++ HL +K
Sbjct: 848 MLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHLTASK 891
>TIGR_CMR|VC_0622 [details] [associations]
symbol:VC_0622 "sensory box sensor histidine
kinase/response regulator" species:686 "Vibrio cholerae O1 biovar
El Tor" [GO:0000155 "phosphorelay sensor kinase activity"
evidence=ISS] [GO:0000156 "phosphorelay response regulator
activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR000014
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003660
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF00672 Pfam:PF02518 Pfam:PF13188
PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50885 SMART:SM00091
SMART:SM00304 SMART:SM00387 SMART:SM00388 SMART:SM00448
InterPro:IPR005467 GO:GO:0016021 GO:GO:0005524 GO:GO:0006355
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 HSSP:P08402 PIR:A82300
RefSeq:NP_230271.1 ProteinModelPortal:Q9KUA1 DNASU:2615410
GeneID:2615410 KEGG:vch:VC0622 PATRIC:20080353 OMA:SLYVSSQ
ProtClustDB:CLSK874044 Uniprot:Q9KUA1
Length = 1177
Score = 120 (47.3 bits), Expect = 6.9e-05, P = 6.9e-05
Identities = 28/104 (26%), Positives = 52/104 (50%)
Query: 52 LEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVV 111
L G Q H V + +E LV+ D MPGM+GY + +K++++ ++P++
Sbjct: 789 LRLEGYRVHTAQDGHQVLEAIKREKP-ELVLLDIMMPGMSGYQVCEKLRQTYDHAELPII 847
Query: 112 IMSSENVPSRISRCLEEGAEEFFLKPVRLSDLN-KLKPHLMKTK 154
++++ N R E GA ++ KP +L ++ HL +K
Sbjct: 848 MLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHLTASK 891
>UNIPROTKB|Q9KS16 [details] [associations]
symbol:VC_1445 "Sensor histidine kinase/response regulator"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000155 "phosphorelay sensor kinase activity" evidence=ISS]
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0023014 "signal transduction by phosphorylation"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 InterPro:IPR003594
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF02518 PRINTS:PR00344
PROSITE:PS50110 SMART:SM00387 SMART:SM00388 SMART:SM00448
InterPro:IPR005467 GO:GO:0005524 GO:GO:0016020 GO:GO:0006355
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P39928 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 PIR:E82198 RefSeq:NP_231088.1
ProteinModelPortal:Q9KS16 DNASU:2614077 GeneID:2614077
KEGG:vch:VC1445 PATRIC:20081952 OMA:GTAKDIS ProtClustDB:CLSK874379
Uniprot:Q9KS16
Length = 572
Score = 88 (36.0 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 18/65 (27%), Positives = 34/65 (52%)
Query: 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPV 138
+LV+ D MP M G K +++ +IP++ +++ S C++ G + LKP+
Sbjct: 500 DLVLMDISMPIMDGIAATKILRDKHI--EIPIIALTAHTAGSDKQNCIDAGMNDIVLKPI 557
Query: 139 RLSDL 143
R D+
Sbjct: 558 RSKDI 562
Score = 72 (30.4 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 14/39 (35%), Positives = 25/39 (64%)
Query: 17 HVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFL 55
H+L V+D+ ++ +I+ LL Y VT ++G +A+E L
Sbjct: 455 HILVVEDTKTNQMVIQLLLNKLGYDVTIAENGLQAVELL 493
>TIGR_CMR|VC_1445 [details] [associations]
symbol:VC_1445 "sensor histidine kinase/response regulator"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000155
"phosphorelay sensor kinase activity" evidence=ISS] [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003661
InterPro:IPR004358 InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512
Pfam:PF02518 PRINTS:PR00344 PROSITE:PS50110 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 GO:GO:0005524
GO:GO:0016020 GO:GO:0006355 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HSSP:P39928 GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 PIR:E82198
RefSeq:NP_231088.1 ProteinModelPortal:Q9KS16 DNASU:2614077
GeneID:2614077 KEGG:vch:VC1445 PATRIC:20081952 OMA:GTAKDIS
ProtClustDB:CLSK874379 Uniprot:Q9KS16
Length = 572
Score = 88 (36.0 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 18/65 (27%), Positives = 34/65 (52%)
Query: 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPV 138
+LV+ D MP M G K +++ +IP++ +++ S C++ G + LKP+
Sbjct: 500 DLVLMDISMPIMDGIAATKILRDKHI--EIPIIALTAHTAGSDKQNCIDAGMNDIVLKPI 557
Query: 139 RLSDL 143
R D+
Sbjct: 558 RSKDI 562
Score = 72 (30.4 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 14/39 (35%), Positives = 25/39 (64%)
Query: 17 HVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFL 55
H+L V+D+ ++ +I+ LL Y VT ++G +A+E L
Sbjct: 455 HILVVEDTKTNQMVIQLLLNKLGYDVTIAENGLQAVELL 493
>UNIPROTKB|Q48ND2 [details] [associations]
symbol:cheY1 "Chemotaxis protein CheY" species:264730
"Pseudomonas syringae pv. phaseolicola 1448A" [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0006935 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:CP000058 GenomeReviews:CP000058_GR
eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413 RefSeq:YP_273089.1
ProteinModelPortal:Q48ND2 STRING:Q48ND2 GeneID:3556464
KEGG:psp:PSPPH_0807 PATRIC:19970685 OMA:KLANYKF
ProtClustDB:CLSK642719 Uniprot:Q48ND2
Length = 122
Score = 96 (38.9 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 18/60 (30%), Positives = 39/60 (65%)
Query: 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137
V+L+I+D MP M G +K++K+ +S + P++++++E+ S+ + GA+ + +KP
Sbjct: 47 VHLIISDVNMPNMDGITFVKEVKKLASYKFTPIIMLTTESQESKKAEGQAAGAKAWVVKP 106
>TIGR_CMR|GSU_0104 [details] [associations]
symbol:GSU_0104 "response regulator, putative"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 HSSP:P10957 RefSeq:NP_951166.1
ProteinModelPortal:Q74GY9 GeneID:2688136 KEGG:gsu:GSU0104
PATRIC:22022954 OMA:NVAVARD ProtClustDB:CLSK309460
BioCyc:GSUL243231:GH27-65-MONOMER Uniprot:Q74GY9
Length = 129
Score = 96 (38.9 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 80 LVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPV 138
LV+ D +P M G ++L+ I+ R PV+++SS + + +C E G + KP+
Sbjct: 55 LVLLDLKLPKMNGLEVLRTIRSEERTRHTPVIVISSSQEETDVVKCRELGVLAYLTKPI 113
>UNIPROTKB|Q746Z1 [details] [associations]
symbol:GSU3376 "Response receiver-modulated diguanylate
cyclase" species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 Pfam:PF00990 GO:GO:0006355
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
SUPFAM:SSF55073 GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160
SMART:SM00267 TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 RefSeq:NP_954416.1 HSSP:P06143
ProteinModelPortal:Q746Z1 GeneID:2686891 KEGG:gsu:GSU3376
PATRIC:22029607 HOGENOM:HOG000167205 OMA:LTHLHNR
ProtClustDB:CLSK829255 BioCyc:GSUL243231:GH27-3335-MONOMER
Uniprot:Q746Z1
Length = 308
Score = 113 (44.8 bits), Expect = 9.0e-05, P = 9.0e-05
Identities = 28/85 (32%), Positives = 50/85 (58%)
Query: 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSS-ENVPSRISRCLEEGAEEFFLK 136
V+LV+ D MP M G+ L + L+D+P+++++S E+ ++I R LE+GA ++ K
Sbjct: 49 VDLVLCDLEMPRMDGFRFLSMTRSRGELQDLPIILLTSREDRDTKI-RGLEQGASDYVTK 107
Query: 137 PVRLSDLNKLKPHLMKTK-IKDQIK 160
P +L MK K ++D++K
Sbjct: 108 PFDSGELVARVRVQMKVKGLQDELK 132
>TIGR_CMR|GSU_3376 [details] [associations]
symbol:GSU_3376 "GGDEF/response regulator receiver domain
protein" species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 Pfam:PF00990 GO:GO:0006355
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
SUPFAM:SSF55073 GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160
SMART:SM00267 TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 RefSeq:NP_954416.1 HSSP:P06143
ProteinModelPortal:Q746Z1 GeneID:2686891 KEGG:gsu:GSU3376
PATRIC:22029607 HOGENOM:HOG000167205 OMA:LTHLHNR
ProtClustDB:CLSK829255 BioCyc:GSUL243231:GH27-3335-MONOMER
Uniprot:Q746Z1
Length = 308
Score = 113 (44.8 bits), Expect = 9.0e-05, P = 9.0e-05
Identities = 28/85 (32%), Positives = 50/85 (58%)
Query: 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSS-ENVPSRISRCLEEGAEEFFLK 136
V+LV+ D MP M G+ L + L+D+P+++++S E+ ++I R LE+GA ++ K
Sbjct: 49 VDLVLCDLEMPRMDGFRFLSMTRSRGELQDLPIILLTSREDRDTKI-RGLEQGASDYVTK 107
Query: 137 PVRLSDLNKLKPHLMKTK-IKDQIK 160
P +L MK K ++D++K
Sbjct: 108 PFDSGELVARVRVQMKVKGLQDELK 132
>TIGR_CMR|GSU_1891 [details] [associations]
symbol:GSU_1891 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR003607 InterPro:IPR006674 Pfam:PF00072 Pfam:PF01966
PROSITE:PS50110 SMART:SM00448 SMART:SM00471 GO:GO:0006355
GO:GO:0035556 GO:GO:0046872 GO:GO:0008152 GO:GO:0005622
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0008081
Gene3D:1.10.3210.10 HOGENOM:HOG000266481 HSSP:P06143
RefSeq:NP_952940.1 ProteinModelPortal:Q74BY7 GeneID:2688472
KEGG:gsu:GSU1891 PATRIC:22026647 OMA:FATIRTH ProtClustDB:CLSK924546
BioCyc:GSUL243231:GH27-1919-MONOMER Uniprot:Q74BY7
Length = 379
Score = 114 (45.2 bits), Expect = 9.9e-05, P = 9.9e-05
Identities = 23/61 (37%), Positives = 41/61 (67%)
Query: 77 GVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLK 136
G+++VITD MP MTG ++L+ I++S+ D+PV++M+ S +++GA +F +K
Sbjct: 50 GIDIVITDINMPEMTGIEVLRAIRKSNP--DVPVILMTGYAELSVAVEAIKQGAFDFIIK 107
Query: 137 P 137
P
Sbjct: 108 P 108
>TIGR_CMR|DET_0232 [details] [associations]
symbol:DET_0232 "DNA-binding response regulator"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034819
RefSeq:YP_180980.1 ProteinModelPortal:Q3Z9W9 STRING:Q3Z9W9
GeneID:3230435 KEGG:det:DET0232 PATRIC:21607535 OMA:SIRELWI
ProtClustDB:CLSK741610 BioCyc:DETH243164:GJNF-232-MONOMER
Uniprot:Q3Z9W9
Length = 227
Score = 110 (43.8 bits), Expect = 0.00011, P = 0.00011
Identities = 25/86 (29%), Positives = 49/86 (56%)
Query: 74 QEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEF 133
+ V ++++ D +P M G+D+LK+I+ S D+P++I++ S + R L GA ++
Sbjct: 43 ESVNPDIILLDLGLPDMNGFDVLKQIRNFS---DVPIIILTVRGDESDVVRGLTLGANDY 99
Query: 134 FLKPVRLSDL-NKLKPHLMKTKIKDQ 158
KP R +L +++ L K +I +
Sbjct: 100 ITKPFRQMELLARVRRLLTKKQINGE 125
>TIGR_CMR|GSU_1495 [details] [associations]
symbol:GSU_1495 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 HSSP:P06143
RefSeq:NP_952546.1 ProteinModelPortal:Q74D24 GeneID:2686126
KEGG:gsu:GSU1495 PATRIC:22025837 KO:K02667 OMA:IHARAGH
ProtClustDB:CLSK828394 BioCyc:GSUL243231:GH27-1478-MONOMER
Uniprot:Q74D24
Length = 458
Score = 93 (37.8 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 21/76 (27%), Positives = 44/76 (57%)
Query: 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPV 138
+LVI+D MPG+ G LL +IKE + D V++M++ + + ++ GA ++ KP
Sbjct: 48 DLVISDVKMPGLDGITLLGRIKEMTP--DTAVLLMTAFSTAEQAVEAMKLGAYDYIAKPF 105
Query: 139 RLSDLNKLKPHLMKTK 154
++ ++ L + ++ +
Sbjct: 106 KVEEVKILARNALEKR 121
Score = 61 (26.5 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 15 QFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFL 55
+ HVL VDD + R+ + LL Y V S +AL L
Sbjct: 2 EIHVLVVDDELSMREFLAILLDREGYTVDQAASAEEALACL 42
>TIGR_CMR|GSU_3217 [details] [associations]
symbol:GSU_3217 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 HSSP:P06143
RefSeq:NP_954258.1 ProteinModelPortal:Q747P8 GeneID:2688316
KEGG:gsu:GSU3217 PATRIC:22029287 OMA:MERASGN ProtClustDB:CLSK829165
BioCyc:GSUL243231:GH27-3257-MONOMER Uniprot:Q747P8
Length = 501
Score = 99 (39.9 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 25/99 (25%), Positives = 50/99 (50%)
Query: 62 GQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSR 121
G + + N EV V+ D +P M+G ++L ++KE + D+ V+++++ +
Sbjct: 36 GTEALQKFQNFRPEV----VLLDISLPDMSGLEILARVKEENE--DVTVIMITANSNADE 89
Query: 122 ISRCLEEGAEEFFLKPVRLSDLNKLKPH-LMKTKIKDQI 159
+ GA++FF KP L L + L + K+K ++
Sbjct: 90 AVTAFQRGADDFFGKPFCLETLRHVVDKALERMKLKKEV 128
Score = 54 (24.1 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALE 53
+L VDD + I +L+ + + V T SG++AL+
Sbjct: 6 ILVVDDEKLISWSISTMLEKAGHSVATAASGTEALQ 41
>UNIPROTKB|O53894 [details] [associations]
symbol:mprA "Response regulator MprA" species:1773
"Mycobacterium tuberculosis" [GO:0000160 "phosphorelay signal
transduction system" evidence=IDA] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0005618 "cell wall" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0006950 "response
to stress" evidence=IEP] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0090034 "regulation of chaperone-mediated protein complex
assembly" evidence=IDA] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0005886 GO:GO:0005737 GO:GO:0005618
GO:GO:0045892 GO:GO:0045893 GO:GO:0009405 GO:GO:0006950
EMBL:BX842575 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000160 eggNOG:COG0745
HOGENOM:HOG000034815 GO:GO:0090034 PIR:A70821 RefSeq:NP_215496.1
RefSeq:NP_335443.1 RefSeq:YP_006514341.1 HSSP:P0A5Z6
ProteinModelPortal:O53894 SMR:O53894 PRIDE:O53894
EnsemblBacteria:EBMYCT00000001458 EnsemblBacteria:EBMYCT00000070763
GeneID:13319541 GeneID:885038 GeneID:925187 KEGG:mtc:MT1009
KEGG:mtu:Rv0981 KEGG:mtv:RVBD_0981 PATRIC:18123964
TubercuList:Rv0981 KO:K07669 OMA:MLMANPR ProtClustDB:CLSK790869
Uniprot:O53894
Length = 230
Score = 90 (36.7 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 19/79 (24%), Positives = 50/79 (63%)
Query: 81 VITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSS-ENVPSRISRCLEEGAEEFFLKPVR 139
++ D MP + G ++ ++++ + D+P++++++ ++V R++ L+ GA+++ KP
Sbjct: 50 LVLDVMMPRLDGLEVCRQLRGTGD--DLPILVLTARDSVSERVAG-LDAGADDYLPKPFA 106
Query: 140 LSDL-NKLKPHLMKTKIKD 157
L +L +++ L +TK +D
Sbjct: 107 LEELLARMRALLRRTKPED 125
Score = 55 (24.4 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDD 61
+L VDD R+ + R L + Y V G +AL+ + D
Sbjct: 5 ILVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMIASDRPD 48
>UNIPROTKB|Q1CXR3 [details] [associations]
symbol:difD "Fibril biogenesis regulator DifD"
species:246197 "Myxococcus xanthus DK 1622" [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:CP000113 GenomeReviews:CP000113_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 KO:K03413 RefSeq:YP_634810.1
ProteinModelPortal:Q1CXR3 SMR:Q1CXR3 IntAct:Q1CXR3 STRING:Q1CXR3
GeneID:4104566 KEGG:mxa:MXAN_6693 PATRIC:22655877 OMA:PFQAPKV
ProtClustDB:CLSK947176 BioCyc:MXAN246197:GIWU-6635-MONOMER
Uniprot:Q1CXR3
Length = 122
Score = 79 (32.9 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 19/71 (26%), Positives = 37/71 (52%)
Query: 73 HQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEE 132
++E+ +L D MP +G + ++I ++ S V++ S+ S + +E GA +
Sbjct: 43 YKELKPDLTTMDIVMPFKSGIEATREIIKADS--SAVVIMCSALGQESLVMEAIEAGASD 100
Query: 133 FFLKPVRLSDL 143
F +KP R D+
Sbjct: 101 FIVKPFRAEDV 111
Score = 51 (23.0 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVT-TVDSGSKALE 53
VL VDD+I R +I+ + + ++V +G +A+E
Sbjct: 5 VLVVDDAIFMRNMIKDIFASGGFEVVGEAANGLEAVE 41
>DICTYBASE|DDB_G0282927 [details] [associations]
symbol:dhkL "histidine kinase L" species:44689
"Dictyostelium discoideum" [GO:0035556 "intracellular signal
transduction" evidence=IEA] [GO:0023014 "signal transduction by
phosphorylation" evidence=IEA] [GO:0016772 "transferase activity,
transferring phosphorus-containing groups" evidence=IEA]
[GO:0016310 "phosphorylation" evidence=IEA] [GO:0016020 "membrane"
evidence=IEA] [GO:0007165 "signal transduction" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004871
"signal transducer activity" evidence=IEA] [GO:0000160
"phosphorelay signal transduction system" evidence=IEA] [GO:0000156
"phosphorelay response regulator activity" evidence=IEA]
[GO:0000155 "phosphorelay sensor kinase activity" evidence=IEA]
[GO:0004673 "protein histidine kinase activity" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016301
"kinase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000014 InterPro:IPR001789
InterPro:IPR003594 InterPro:IPR003661 InterPro:IPR004358
InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512 Pfam:PF02518
PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50112 PROSITE:PS50113
SMART:SM00091 SMART:SM00387 SMART:SM00388 SMART:SM00448
InterPro:IPR005467 InterPro:IPR001610 dictyBase:DDB_G0282927
GO:GO:0005525 GO:GO:0005524 GenomeReviews:CM000153_GR GO:GO:0016020
GO:GO:0006355 GO:GO:0035556 GO:GO:0003924 GO:GO:0006184
GO:GO:0005622 EMBL:AAFI02000049 GO:GO:0023014 SMART:SM00086
TIGRFAMs:TIGR00229 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HSSP:P39928 GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 eggNOG:COG0642
EMBL:AF362373 EMBL:AF258796 RefSeq:XP_639305.1
ProteinModelPortal:Q54RP6 EnsemblProtists:DDB0191389 GeneID:8623876
KEGG:ddi:DDB_G0282927 OMA:FIERNDT Uniprot:Q54RP6
Length = 1709
Score = 119 (46.9 bits), Expect = 0.00014, P = 0.00014
Identities = 35/132 (26%), Positives = 68/132 (51%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVG 77
VL VDD+ I+ +++ ++L+T +V +V SG+ AL + QSS Y
Sbjct: 1571 VLVVDDNHINIQILSKMLQTVGCEVDSVLSGADALAKIN------QSSGDSY-------- 1616
Query: 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIP--VVIMSSENVPSRIS-RCLEEGAEEFF 134
+ + D MP M G+ + +KI+E +P +I ++ NV +C + G ++F
Sbjct: 1617 -DAIFLDIQMPDMDGFQVSRKIREREKKFSLPRVAIIATTANVFKEDQLKCFDAGMDDFI 1675
Query: 135 LKPVRLSDLNKL 146
KP++ +++ ++
Sbjct: 1676 SKPIKRAEIKEI 1687
>TIGR_CMR|SPO_0022 [details] [associations]
symbol:SPO_0022 "response regulator" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR001932 Pfam:PF00072 Pfam:PF07228 PROSITE:PS50110
SMART:SM00331 SMART:SM00448 GO:GO:0003824 GO:GO:0006355
GO:GO:0035556 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0008152
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
SUPFAM:SSF81606 RefSeq:YP_165295.1 ProteinModelPortal:Q5LWH9
GeneID:3194721 KEGG:sil:SPO0022 PATRIC:23373275
HOGENOM:HOG000291805 OMA:ERKWGDL ProtClustDB:CLSK933114
Uniprot:Q5LWH9
Length = 445
Score = 113 (44.8 bits), Expect = 0.00017, P = 0.00017
Identities = 20/65 (30%), Positives = 44/65 (67%)
Query: 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPV 138
+LV++D+ MPGM+G D + ++ +S R ++++S++ + +++ L+ GA++F +KPV
Sbjct: 86 DLVLSDWVMPGMSGVDFCEAFRQLNSDRYCYFILLTSKSEKNEVAQGLDAGADDFLIKPV 145
Query: 139 RLSDL 143
+L
Sbjct: 146 SSDEL 150
>UNIPROTKB|Q0PBM2 [details] [associations]
symbol:cheA "Chemotaxis histidine kinase" species:192222
"Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819"
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR001789
InterPro:IPR002545 InterPro:IPR003594 InterPro:IPR004105
InterPro:IPR004358 InterPro:IPR008207 InterPro:IPR009082
Pfam:PF00072 Pfam:PF01584 Pfam:PF01627 Pfam:PF02518 Pfam:PF02895
PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50851 PROSITE:PS50894
SMART:SM00073 SMART:SM00260 SMART:SM00387 SMART:SM00448
InterPro:IPR005467 GO:GO:0005524 GO:GO:0005737 GO:GO:0006355
GO:GO:0035556 GO:GO:0006935 GO:GO:0023014 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155 Gene3D:3.30.565.10
SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 Gene3D:1.20.120.160
SUPFAM:SSF47226 KO:K03407 Gene3D:1.10.287.560 SUPFAM:SSF50341
EMBL:AL111168 GenomeReviews:AL111168_GR OMA:CDHGIED
ProtClustDB:CLSK872488 PIR:B81447 RefSeq:YP_002343725.1
ProteinModelPortal:Q0PBM2 IntAct:Q0PBM2 GeneID:904608
KEGG:cje:Cj0284c PATRIC:20057487 HOGENOM:HOG000255264
BioCyc:CJEJ192222:GJTS-263-MONOMER Uniprot:Q0PBM2
Length = 769
Score = 115 (45.5 bits), Expect = 0.00020, P = 0.00020
Identities = 34/124 (27%), Positives = 60/124 (48%)
Query: 14 SQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMH 73
S + VL VDDS +DR L+++ L+ + +G +AL + E D
Sbjct: 645 SDYKVLIVDDSKMDRTLMQKALEPLGVSLIEATNGVEALNIIKSGEHD------------ 692
Query: 74 QEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEF 133
++ ++ D MP M GY L +I++ S R++P++ ++S + R +E G E+
Sbjct: 693 ----IDAMLIDIEMPRMDGYTLAGEIRKYSKYRNLPLIAVTSRTSKTDRLRGVEVGMTEY 748
Query: 134 FLKP 137
KP
Sbjct: 749 ITKP 752
>UNIPROTKB|Q5HWI3 [details] [associations]
symbol:cheA "Chemotaxis protein CheA" species:195099
"Campylobacter jejuni RM1221" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
[GO:0016301 "kinase activity" evidence=ISS] InterPro:IPR001789
InterPro:IPR002545 InterPro:IPR003594 InterPro:IPR004105
InterPro:IPR004358 InterPro:IPR008207 InterPro:IPR009082
Pfam:PF00072 Pfam:PF01584 Pfam:PF01627 Pfam:PF02518 Pfam:PF02895
PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50851 PROSITE:PS50894
SMART:SM00073 SMART:SM00260 SMART:SM00387 SMART:SM00448
InterPro:IPR005467 GO:GO:0005524 GO:GO:0005737 GO:GO:0006355
GO:GO:0035556 GO:GO:0006935 GO:GO:0016301 GO:GO:0004871
EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0023014 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784 GO:GO:0000155
Gene3D:3.30.565.10 SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109
Gene3D:1.20.120.160 SUPFAM:SSF47226 KO:K03407 Gene3D:1.10.287.560
SUPFAM:SSF50341 OMA:CDHGIED ProtClustDB:CLSK872488
HOGENOM:HOG000255264 RefSeq:YP_178352.1 ProteinModelPortal:Q5HWI3
STRING:Q5HWI3 GeneID:3231094 KEGG:cjr:CJE0332 PATRIC:20042366
BioCyc:CJEJ195099:GJC0-337-MONOMER Uniprot:Q5HWI3
Length = 769
Score = 115 (45.5 bits), Expect = 0.00020, P = 0.00020
Identities = 34/124 (27%), Positives = 60/124 (48%)
Query: 14 SQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMH 73
S + VL VDDS +DR L+++ L+ + +G +AL + E D
Sbjct: 645 SDYKVLIVDDSKMDRTLMQKALEPLGVSLIEATNGVEALNIIKSGEHD------------ 692
Query: 74 QEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEF 133
++ ++ D MP M GY L +I++ S R++P++ ++S + R +E G E+
Sbjct: 693 ----IDAMLIDIEMPRMDGYTLAGEIRKYSKYRNLPLIAVTSRTSKTDRLRGVEVGMTEY 748
Query: 134 FLKP 137
KP
Sbjct: 749 ITKP 752
>TIGR_CMR|CJE_0332 [details] [associations]
symbol:CJE_0332 "chemotaxis protein CheA" species:195099
"Campylobacter jejuni RM1221" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
[GO:0016301 "kinase activity" evidence=ISS] InterPro:IPR001789
InterPro:IPR002545 InterPro:IPR003594 InterPro:IPR004105
InterPro:IPR004358 InterPro:IPR008207 InterPro:IPR009082
Pfam:PF00072 Pfam:PF01584 Pfam:PF01627 Pfam:PF02518 Pfam:PF02895
PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50851 PROSITE:PS50894
SMART:SM00073 SMART:SM00260 SMART:SM00387 SMART:SM00448
InterPro:IPR005467 GO:GO:0005524 GO:GO:0005737 GO:GO:0006355
GO:GO:0035556 GO:GO:0006935 GO:GO:0016301 GO:GO:0004871
EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0023014 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784 GO:GO:0000155
Gene3D:3.30.565.10 SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109
Gene3D:1.20.120.160 SUPFAM:SSF47226 KO:K03407 Gene3D:1.10.287.560
SUPFAM:SSF50341 OMA:CDHGIED ProtClustDB:CLSK872488
HOGENOM:HOG000255264 RefSeq:YP_178352.1 ProteinModelPortal:Q5HWI3
STRING:Q5HWI3 GeneID:3231094 KEGG:cjr:CJE0332 PATRIC:20042366
BioCyc:CJEJ195099:GJC0-337-MONOMER Uniprot:Q5HWI3
Length = 769
Score = 115 (45.5 bits), Expect = 0.00020, P = 0.00020
Identities = 34/124 (27%), Positives = 60/124 (48%)
Query: 14 SQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMH 73
S + VL VDDS +DR L+++ L+ + +G +AL + E D
Sbjct: 645 SDYKVLIVDDSKMDRTLMQKALEPLGVSLIEATNGVEALNIIKSGEHD------------ 692
Query: 74 QEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEF 133
++ ++ D MP M GY L +I++ S R++P++ ++S + R +E G E+
Sbjct: 693 ----IDAMLIDIEMPRMDGYTLAGEIRKYSKYRNLPLIAVTSRTSKTDRLRGVEVGMTEY 748
Query: 134 FLKP 137
KP
Sbjct: 749 ITKP 752
>TIGR_CMR|GSU_2574 [details] [associations]
symbol:GSU_2574 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR003607 InterPro:IPR006674 Pfam:PF00072 Pfam:PF01966
PROSITE:PS50110 SMART:SM00448 SMART:SM00471 GO:GO:0006355
GO:GO:0035556 GO:GO:0046872 GO:GO:0008152 GO:GO:0005622
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0008081
Gene3D:1.10.3210.10 HOGENOM:HOG000266481 RefSeq:NP_953620.1
ProteinModelPortal:Q74A17 GeneID:2686365 KEGG:gsu:GSU2574
PATRIC:22028001 KO:K07814 OMA:HTRRISE ProtClustDB:CLSK746108
BioCyc:GSUL243231:GH27-2551-MONOMER Uniprot:Q74A17
Length = 368
Score = 100 (40.3 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 22/81 (27%), Positives = 43/81 (53%)
Query: 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137
++L++ D MP + G+ L +K+ DIPV+++++ ++R L GA +F KP
Sbjct: 49 IDLILLDLEMPELNGFATLATLKKHPLWCDIPVIVLTASK--DEVTRTLRLGANDFLAKP 106
Query: 138 VRLSDLN-KLKPHLMKTKIKD 157
+L ++ H+ K+ D
Sbjct: 107 YDTEELRLRVMNHVRAKKLVD 127
Score = 47 (21.6 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFL 55
VL VDD ++R+L+ +L + +T +G +AL L
Sbjct: 7 VLVVDDEEMNRELLSVMLDGLATPITA-QNGLEALRVL 43
>TIGR_CMR|BA_4777 [details] [associations]
symbol:BA_4777 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_846982.1 RefSeq:YP_021423.1 RefSeq:YP_030680.1
ProteinModelPortal:Q81L55 DNASU:1083888
EnsemblBacteria:EBBACT00000012704 EnsemblBacteria:EBBACT00000017584
EnsemblBacteria:EBBACT00000020354 GeneID:1083888 GeneID:2815717
GeneID:2851624 KEGG:ban:BA_4777 KEGG:bar:GBAA_4777 KEGG:bat:BAS4433
OMA:DISIQEM ProtClustDB:CLSK917419
BioCyc:BANT260799:GJAJ-4490-MONOMER
BioCyc:BANT261594:GJ7F-4640-MONOMER Uniprot:Q81L55
Length = 230
Score = 82 (33.9 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 18/65 (27%), Positives = 40/65 (61%)
Query: 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPV 138
+L+I D MP + G ++++ I+E S+ +P+++MS+++ + L GA+++ KP
Sbjct: 48 DLIILDIMMPKLDGLEVVRIIREKSA---VPILMMSAKDTDVDKAVGLGLGADDYICKPF 104
Query: 139 RLSDL 143
+ +L
Sbjct: 105 SMIEL 109
Score = 63 (27.2 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 10/37 (27%), Positives = 22/37 (59%)
Query: 17 HVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALE 53
H+L V+D + ++++E+ L +QVT G + ++
Sbjct: 4 HILLVEDDLSIQEMVEKYLVKEGFQVTIASDGEEGVD 40
>TIGR_CMR|ECH_0773 [details] [associations]
symbol:ECH_0773 "putative response regulator/diguanylate
cyclase" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0004871 "signal transducer activity"
evidence=ISS] [GO:0007165 "signal transduction" evidence=ISS]
InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 Pfam:PF00990 GO:GO:0006355 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0005622 SUPFAM:SSF55073
GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160 SMART:SM00267
TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG3706 KO:K02488 HOGENOM:HOG000167204
ProtClustDB:PRK09581 RefSeq:YP_507571.1 ProteinModelPortal:Q2GG62
STRING:Q2GG62 GeneID:3927207 KEGG:ech:ECH_0773 PATRIC:20576976
OMA:PDICARY BioCyc:ECHA205920:GJNR-776-MONOMER Uniprot:Q2GG62
Length = 458
Score = 97 (39.2 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 21/67 (31%), Positives = 41/67 (61%)
Query: 74 QEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSS-ENVP-SRISRCLEEGAE 131
+E ++++ D MP M GY+ K++K + IP+V++++ +N +R+S L GA+
Sbjct: 43 EEKHPDIILLDVMMPEMDGYETCKRLKSNPETTYIPIVMVTALDNTSDNRVSG-LSYGAD 101
Query: 132 EFFLKPV 138
+F KP+
Sbjct: 102 DFLTKPI 108
Score = 53 (23.7 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALE 53
VL VDD + KL++ L + Y V T +G A++
Sbjct: 5 VLIVDDLPANIKLLQAKLMSEYYNVLTATNGMDAIK 40
>TIGR_CMR|GSU_2946 [details] [associations]
symbol:GSU_2946 "DNA-binding heavy metal response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 InterPro:IPR006291
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034815 KO:K07665 TIGRFAMs:TIGR01387
HSSP:Q9WYN0 RefSeq:NP_953988.1 ProteinModelPortal:Q748Q5
GeneID:2688389 KEGG:gsu:GSU2946 PATRIC:22028753 OMA:GYMLEIP
ProtClustDB:CLSK743174 BioCyc:GSUL243231:GH27-2897-MONOMER
Uniprot:Q748Q5
Length = 223
Score = 107 (42.7 bits), Expect = 0.00026, P = 0.00026
Identities = 22/66 (33%), Positives = 45/66 (68%)
Query: 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSEN-VPSRISRCLEEGAEEFFLKP 137
+L+I D +PG G+++L+++++ S ++PV+ +S+ + V R+ R LE GA+++ +KP
Sbjct: 46 DLIILDIMLPGRDGWEVLEELRKEGS--EVPVIYLSARDAVHDRV-RGLELGADDYLVKP 102
Query: 138 VRLSDL 143
S+L
Sbjct: 103 FAFSEL 108
>TIGR_CMR|CHY_1018 [details] [associations]
symbol:CHY_1018 "chemotaxis response regulator"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413 OMA:PFQAPKV
RefSeq:YP_359865.1 ProteinModelPortal:Q3ADB9 SMR:Q3ADB9
STRING:Q3ADB9 GeneID:3728492 KEGG:chy:CHY_1018 PATRIC:21275169
BioCyc:CHYD246194:GJCN-1017-MONOMER Uniprot:Q3ADB9
Length = 121
Score = 73 (30.8 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 16/66 (24%), Positives = 36/66 (54%)
Query: 72 MHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAE 131
M++E+ ++V D MP M G +++IK+ + +++ S+ + + ++ GA
Sbjct: 42 MYKELKPDVVTMDITMPEMDGIQAVREIKKIDP--NAKIIMCSAMGQQALVMEAIQAGAI 99
Query: 132 EFFLKP 137
+F +KP
Sbjct: 100 DFIVKP 105
Score = 59 (25.8 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 13/37 (35%), Positives = 24/37 (64%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVT-TVDSGSKALE 53
VL VDD+ R +I+ +L + Y+V ++G++A+E
Sbjct: 5 VLIVDDAAFMRMMIKNILVKNGYEVVGEAENGAQAVE 41
>UNIPROTKB|P0A5Z4 [details] [associations]
symbol:mtrA "DNA-binding response regulator MtrA"
species:1773 "Mycobacterium tuberculosis" [GO:0005886 "plasma
membrane" evidence=IDA] [GO:0006468 "protein phosphorylation"
evidence=IDA] [GO:0044117 "growth of symbiont in host"
evidence=IMP] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IDA] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0005886 GO:GO:0045893 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0006468 GO:GO:0044117 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622 EMBL:BX842582
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 EMBL:U01971 PIR:H70592 RefSeq:NP_217763.1
RefSeq:NP_337872.1 RefSeq:YP_006516722.1 PDB:2GWR PDB:3NHZ
PDBsum:2GWR PDBsum:3NHZ ProteinModelPortal:P0A5Z4 SMR:P0A5Z4
EnsemblBacteria:EBMYCT00000000173 EnsemblBacteria:EBMYCT00000070796
GeneID:13318068 GeneID:888743 GeneID:923067 KEGG:mtc:MT3344
KEGG:mtu:Rv3246c KEGG:mtv:RVBD_3246c PATRIC:18129108
TubercuList:Rv3246c KO:K07670 OMA:GFEPSFV ProtClustDB:CLSK872159
EvolutionaryTrace:P0A5Z4 Uniprot:P0A5Z4
Length = 228
Score = 97 (39.2 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 19/70 (27%), Positives = 42/70 (60%)
Query: 74 QEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEF 133
+E+ +LV+ D +PGM G D+ + ++ S +P+V+++++ + LE GA+++
Sbjct: 46 RELRPDLVLLDLMLPGMNGIDVCRVLRADSG---VPIVMLTAKTDTVDVVLGLESGADDY 102
Query: 134 FLKPVRLSDL 143
+KP + +L
Sbjct: 103 IMKPFKPKEL 112
Score = 42 (19.8 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 8/35 (22%), Positives = 18/35 (51%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKAL 52
+L VDD +++ +L+ + + G++AL
Sbjct: 8 ILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQAL 42
>UNIPROTKB|Q9KT84 [details] [associations]
symbol:luxO "Regulatory protein LuxO" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0035556 "intracellular signal
transduction" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG2204 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 PIR:C82250
RefSeq:NP_230666.1 ProteinModelPortal:Q9KT84 DNASU:2614291
GeneID:2614291 KEGG:vch:VC1021 PATRIC:20081144 KO:K10912
OMA:HEEGREF ProtClustDB:CLSK874182 Uniprot:Q9KT84
Length = 455
Score = 106 (42.4 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 23/83 (27%), Positives = 44/83 (53%)
Query: 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPV 138
+L++ D +P MTG D+L +KE S D+P+V M++ + GA++F +KP
Sbjct: 42 DLILLDLRLPDMTGMDVLYAVKEKSP--DVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPC 99
Query: 139 RLSDLNKLKPHLMK--TKIKDQI 159
L + ++ +K+K+ +
Sbjct: 100 EADRLRVTVNNAIRKASKLKNDV 122
Score = 40 (19.1 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 21 VDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDD 61
V+D+ L L + V +G A+E +G E D
Sbjct: 2 VEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPD 42
>TIGR_CMR|VC_1021 [details] [associations]
symbol:VC_1021 "LuxO repressor protein" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG2204 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 PIR:C82250
RefSeq:NP_230666.1 ProteinModelPortal:Q9KT84 DNASU:2614291
GeneID:2614291 KEGG:vch:VC1021 PATRIC:20081144 KO:K10912
OMA:HEEGREF ProtClustDB:CLSK874182 Uniprot:Q9KT84
Length = 455
Score = 106 (42.4 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 23/83 (27%), Positives = 44/83 (53%)
Query: 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPV 138
+L++ D +P MTG D+L +KE S D+P+V M++ + GA++F +KP
Sbjct: 42 DLILLDLRLPDMTGMDVLYAVKEKSP--DVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPC 99
Query: 139 RLSDLNKLKPHLMK--TKIKDQI 159
L + ++ +K+K+ +
Sbjct: 100 EADRLRVTVNNAIRKASKLKNDV 122
Score = 40 (19.1 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 21 VDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDD 61
V+D+ L L + V +G A+E +G E D
Sbjct: 2 VEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPD 42
>UNIPROTKB|Q9KT55 [details] [associations]
symbol:VC_1050 "Response regulator" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS] [GO:0035556
"intracellular signal transduction" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 OMA:MICDLAM
HSSP:Q56312 PIR:A82249 RefSeq:NP_230695.1 ProteinModelPortal:Q9KT55
DNASU:2614320 GeneID:2614320 KEGG:vch:VC1050 PATRIC:20081198
ProtClustDB:CLSK874195 Uniprot:Q9KT55
Length = 368
Score = 85 (35.0 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 16/60 (26%), Positives = 37/60 (61%)
Query: 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPV 138
+L++ D MP + G + ++++ SSS +P+V++S+ + +++ L G ++F KP+
Sbjct: 70 DLILCDLSMPVLNGIEFVEEV--SSSYPSLPLVVVSATEEMADVAKALRFGIKDFLPKPI 127
Score = 64 (27.6 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDD 61
+L VDD + R++ + L+ YQV ++G L L HE D
Sbjct: 27 ILLVDDDPVFRRMTKGYLQKYGYQVIEAENGLDGLRKLRDHEPD 70
>TIGR_CMR|VC_1050 [details] [associations]
symbol:VC_1050 "response regulator" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 OMA:MICDLAM HSSP:Q56312
PIR:A82249 RefSeq:NP_230695.1 ProteinModelPortal:Q9KT55
DNASU:2614320 GeneID:2614320 KEGG:vch:VC1050 PATRIC:20081198
ProtClustDB:CLSK874195 Uniprot:Q9KT55
Length = 368
Score = 85 (35.0 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 16/60 (26%), Positives = 37/60 (61%)
Query: 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPV 138
+L++ D MP + G + ++++ SSS +P+V++S+ + +++ L G ++F KP+
Sbjct: 70 DLILCDLSMPVLNGIEFVEEV--SSSYPSLPLVVVSATEEMADVAKALRFGIKDFLPKPI 127
Score = 64 (27.6 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDD 61
+L VDD + R++ + L+ YQV ++G L L HE D
Sbjct: 27 ILLVDDDPVFRRMTKGYLQKYGYQVIEAENGLDGLRKLRDHEPD 70
>TIGR_CMR|DET_1540 [details] [associations]
symbol:DET_1540 "DNA-binding response regulator"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034815 RefSeq:YP_182238.1 ProteinModelPortal:Q3Z6B1
GeneID:3229185 KEGG:det:DET1540 PATRIC:21610100 OMA:ARIRCIL
ProtClustDB:CLSK741608 BioCyc:DETH243164:GJNF-1541-MONOMER
Uniprot:Q3Z6B1
Length = 225
Score = 106 (42.4 bits), Expect = 0.00037, P = 0.00037
Identities = 25/72 (34%), Positives = 40/72 (55%)
Query: 72 MHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAE 131
M +E NLVI D +P M G ++LK ++ D P++I++ + S + LE GA
Sbjct: 41 MIEEQRPNLVILDLSLPDMDGLEVLK---DARLFCDTPIIILTVRSEESDVVEALELGAN 97
Query: 132 EFFLKPVRLSDL 143
E+ +KP R +L
Sbjct: 98 EYIIKPFRQMEL 109
>UNIPROTKB|P76340 [details] [associations]
symbol:yedW "predicted DNA-binding response regulator in
two-component system with YedV" species:83333 "Escherichia coli
K-12" [GO:0005622 "intracellular" evidence=IEA] [GO:0000156
"phosphorelay response regulator activity" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0035556 "intracellular signal transduction"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA;ISS] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR006291 InterPro:IPR016032
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0005737 GO:GO:0006355 GO:GO:0035556 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
SUPFAM:SSF46894 HOGENOM:HOG000034815 TIGRFAMs:TIGR01387 KO:K02483
PIR:E64961 RefSeq:NP_416478.2 RefSeq:YP_490219.1
ProteinModelPortal:P76340 SMR:P76340 DIP:DIP-11853N IntAct:P76340
MINT:MINT-1223015 PRIDE:P76340 EnsemblBacteria:EBESCT00000004539
EnsemblBacteria:EBESCT00000015627 GeneID:12931392 GeneID:946486
KEGG:ecj:Y75_p1936 KEGG:eco:b1969 PATRIC:32119269 EchoBASE:EB3798
EcoGene:EG14045 OMA:MTYDLWH ProtClustDB:PRK11517
BioCyc:EcoCyc:G7057-MONOMER BioCyc:ECOL316407:JW5322-MONOMER
Genevestigator:P76340 Uniprot:P76340
Length = 223
Score = 96 (38.9 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 20/65 (30%), Positives = 41/65 (63%)
Query: 80 LVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSS-ENVPSRISRCLEEGAEEFFLKPV 138
L+I D +PGM G+ +L+ ++ + + PV+ +++ ++V R+ R L+ GA ++ +KP
Sbjct: 47 LIILDIMLPGMDGWQILQTLRTA---KQTPVICLTARDSVDDRV-RGLDSGANDYLVKPF 102
Query: 139 RLSDL 143
S+L
Sbjct: 103 SFSEL 107
Score = 42 (19.8 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 10/43 (23%), Positives = 22/43 (51%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHED 60
+L ++D+ ++ + + L + Y + V G L +L L +D
Sbjct: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGL-YLALKDD 44
>TIGR_CMR|CHY_2567 [details] [associations]
symbol:CHY_2567 "DNA-binding response regulator"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0745 HOGENOM:HOG000034819 KO:K02483 RefSeq:YP_361360.1
ProteinModelPortal:Q3A924 SMR:Q3A924 STRING:Q3A924 GeneID:3728531
KEGG:chy:CHY_2567 PATRIC:21278183
BioCyc:CHYD246194:GJCN-2566-MONOMER Uniprot:Q3A924
Length = 236
Score = 96 (38.9 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 23/81 (28%), Positives = 50/81 (61%)
Query: 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSS--ENVPSRISRCLEEGAEEFFLK 136
+L++ D+ MP M+G ++L++I++ S IP++++++ E V I E G +++ +K
Sbjct: 48 DLIVLDWMMPEMSGIEVLREIRKKSQ---IPIIMLTAKTEEVDKLIG--FEFGVDDYVVK 102
Query: 137 PVRLSDLN-KLKPHLMKTKIK 156
P L +L+ ++K L + + K
Sbjct: 103 PFSLRELSARIKTILKRLEAK 123
Score = 43 (20.2 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKAL 52
+L VDD +++ L Y+V T +G +AL
Sbjct: 5 ILIVDDEPKIVTMVKSYLLKEGYEVITAFNGREAL 39
>TIGR_CMR|CPS_1208 [details] [associations]
symbol:CPS_1208 "phosphate regulon response regulator
PhoB" species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006796
"phosphate-containing compound metabolic process" evidence=ISS]
[GO:0006817 "phosphate ion transport" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 InterPro:IPR011879
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0006817 eggNOG:COG0745 HOGENOM:HOG000034819
KO:K07657 OMA:QVLEMGP TIGRFAMs:TIGR02154 RefSeq:YP_267951.1
ProteinModelPortal:Q486R4 SMR:Q486R4 STRING:Q486R4 GeneID:3522949
KEGG:cps:CPS_1208 PATRIC:21465661
BioCyc:CPSY167879:GI48-1289-MONOMER Uniprot:Q486R4
Length = 233
Score = 106 (42.4 bits), Expect = 0.00040, P = 0.00040
Identities = 19/65 (29%), Positives = 39/65 (60%)
Query: 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPV 138
+L++ D+ +PG TG L KK+K++ R+IP++++++ + + E G ++F KP
Sbjct: 48 DLILLDWMLPGGTGVSLAKKLKQNEYTRNIPIIMLTARSDEDDKVKGFEAGVDDFVTKPF 107
Query: 139 RLSDL 143
+L
Sbjct: 108 SPKEL 112
>UNIPROTKB|Q48GB2 [details] [associations]
symbol:PSPPH_3413 "Chemotaxis protein CheV, putative"
species:264730 "Pseudomonas syringae pv. phaseolicola 1448A"
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 InterPro:IPR002545
Pfam:PF00072 Pfam:PF01584 PROSITE:PS50110 PROSITE:PS50851
SMART:SM00260 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 EMBL:CP000058
GenomeReviews:CP000058_GR SUPFAM:SSF50341 eggNOG:COG0835
HOGENOM:HOG000255027 KO:K03415 InterPro:IPR024181 PIRSF:PIRSF002867
RefSeq:YP_275571.1 ProteinModelPortal:Q48GB2 STRING:Q48GB2
GeneID:3556331 KEGG:psp:PSPPH_3413 PATRIC:19976236 OMA:QVSRCLQ
ProtClustDB:CLSK2299194 Uniprot:Q48GB2
Length = 308
Score = 108 (43.1 bits), Expect = 0.00041, P = 0.00041
Identities = 35/126 (27%), Positives = 60/126 (47%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVG 77
VL VDDS + RK + R L+T +V ++ G +AL++L +G+ + M
Sbjct: 181 VLTVDDSSVARKQVSRCLETVGVEVVALNDGRQALDYLLKMVAEGKKPEEEFLMM----- 235
Query: 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137
I+D MP M GY L I+ ++ + + + +S + + + GA++F K
Sbjct: 236 ----ISDIEMPEMDGYTLTAAIRNDPRMQKMHITLHTSLSGVFNQAMVKKVGADDFLAK- 290
Query: 138 VRLSDL 143
R DL
Sbjct: 291 FRPDDL 296
>TIGR_CMR|GSU_0149 [details] [associations]
symbol:GSU_0149 "sensor histidine kinase/response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000155 "phosphorelay sensor kinase activity" evidence=ISS]
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR003594
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF02518 PRINTS:PR00344
PROSITE:PS50110 SMART:SM00387 SMART:SM00388 SMART:SM00448
InterPro:IPR005467 GO:GO:0005524 GO:GO:0016020 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0023014 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
SUPFAM:SSF55874 PROSITE:PS50109 HSSP:P06143 RefSeq:NP_951211.1
ProteinModelPortal:Q74GU5 GeneID:2687911 KEGG:gsu:GSU0149
PATRIC:22023046 HOGENOM:HOG000135524 OMA:ISHKFRT
ProtClustDB:CLSK827668 BioCyc:GSUL243231:GH27-183-MONOMER
Uniprot:Q74GU5
Length = 371
Score = 109 (43.4 bits), Expect = 0.00043, P = 0.00043
Identities = 30/116 (25%), Positives = 60/116 (51%)
Query: 46 DSGSKALE-FLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYDLLKKIKESSS 104
D +KAL+ + L DG+ + ++ + G+++++TD MP + G +LL+++KE
Sbjct: 27 DLCAKALKGYRVLQAGDGEEALRLF----ERGGIDVILTDVMMPKLNGIELLRRLKEMEP 82
Query: 105 LRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMKTKI-KDQI 159
+ V++M+ I L+ A++F KP+ L L + K+ K++I
Sbjct: 83 T--LVVIVMTGYAEKDIILNALKADADDFITKPLNLLQLKTAVDRALDKKVLKEEI 136
>TIGR_CMR|SO_1558 [details] [associations]
symbol:SO_1558 "phosphate regulon response regulator PhoB"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR011879 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0006817
HOGENOM:HOG000034819 HSSP:P08402 KO:K07657 OMA:QVLEMGP
TIGRFAMs:TIGR02154 RefSeq:NP_717171.2 ProteinModelPortal:Q8EGP1
GeneID:1169364 KEGG:son:SO_1558 PATRIC:23522760
ProtClustDB:CLSK906318 Uniprot:Q8EGP1
Length = 229
Score = 101 (40.6 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 22/85 (25%), Positives = 48/85 (56%)
Query: 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPV 138
+L++ D+ PG +G L K++K+ R IP++++++ + LE GA+++ KP
Sbjct: 48 DLILLDWMFPGGSGIQLAKRLKQDEFTRQIPIIMLTARGEEEDKVKGLEVGADDYITKPF 107
Query: 139 RLSDL-NKLKPHLMK---TKIKDQI 159
+L ++K L + T++++ I
Sbjct: 108 SPKELVARIKAVLRRSAPTRLEETI 132
Score = 35 (17.4 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 6/38 (15%), Positives = 19/38 (50%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFL 55
+L V+D + R+++ +++ + + + A+ L
Sbjct: 5 ILIVEDELAIREMLTFVMEQHGFTTSAAEDFDSAIALL 42
>UNIPROTKB|Q9KPC0 [details] [associations]
symbol:VC_2453 "Sensor histidine kinase/response regulator"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000155 "phosphorelay sensor kinase activity" evidence=ISS]
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0023014 "signal transduction by phosphorylation"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 InterPro:IPR003594
InterPro:IPR003660 InterPro:IPR003661 InterPro:IPR004358
InterPro:IPR008207 InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512
Pfam:PF00672 Pfam:PF01627 Pfam:PF02518 PRINTS:PR00344
PROSITE:PS50110 PROSITE:PS50885 PROSITE:PS50894 SMART:SM00073
SMART:SM00304 SMART:SM00387 SMART:SM00388 SMART:SM00448
InterPro:IPR005467 GO:GO:0016021 GO:GO:0005524 GO:GO:0006355
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 Gene3D:1.20.120.160 SUPFAM:SSF47226
KO:K07678 OMA:ANQVISQ ProtClustDB:PRK11107 InterPro:IPR019247
Pfam:PF09984 HSSP:Q9A5I4 PIR:B82075 RefSeq:NP_232082.1
ProteinModelPortal:Q9KPC0 DNASU:2612995 GeneID:2612995
KEGG:vch:VC2453 PATRIC:20083927 Uniprot:Q9KPC0
Length = 927
Score = 95 (38.5 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 19/71 (26%), Positives = 36/71 (50%)
Query: 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPV 138
++++ D MP M G K IK+ RD PV+ +++ + R L+ G +++ KP+
Sbjct: 710 DIILMDIQMPHMDGVTACKAIKQLKGYRDTPVIAVTAHAMAGERDRLLKAGMDDYLTKPI 769
Query: 139 RLSDLNKLKPH 149
L ++ H
Sbjct: 770 EEHILQQVLVH 780
Score = 60 (26.2 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALE 53
V+AVDD+ + KLI LL+ V + SG +A+E
Sbjct: 667 VMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIE 702
>TIGR_CMR|VC_2453 [details] [associations]
symbol:VC_2453 "sensor histidine kinase/response regulator"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000155
"phosphorelay sensor kinase activity" evidence=ISS] [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003660
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR008207
InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512 Pfam:PF00672
Pfam:PF01627 Pfam:PF02518 PRINTS:PR00344 PROSITE:PS50110
PROSITE:PS50885 PROSITE:PS50894 SMART:SM00073 SMART:SM00304
SMART:SM00387 SMART:SM00388 SMART:SM00448 InterPro:IPR005467
GO:GO:0016021 GO:GO:0005524 GO:GO:0006355 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 Gene3D:1.20.120.160 SUPFAM:SSF47226
KO:K07678 OMA:ANQVISQ ProtClustDB:PRK11107 InterPro:IPR019247
Pfam:PF09984 HSSP:Q9A5I4 PIR:B82075 RefSeq:NP_232082.1
ProteinModelPortal:Q9KPC0 DNASU:2612995 GeneID:2612995
KEGG:vch:VC2453 PATRIC:20083927 Uniprot:Q9KPC0
Length = 927
Score = 95 (38.5 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 19/71 (26%), Positives = 36/71 (50%)
Query: 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPV 138
++++ D MP M G K IK+ RD PV+ +++ + R L+ G +++ KP+
Sbjct: 710 DIILMDIQMPHMDGVTACKAIKQLKGYRDTPVIAVTAHAMAGERDRLLKAGMDDYLTKPI 769
Query: 139 RLSDLNKLKPH 149
L ++ H
Sbjct: 770 EEHILQQVLVH 780
Score = 60 (26.2 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALE 53
V+AVDD+ + KLI LL+ V + SG +A+E
Sbjct: 667 VMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIE 702
>TIGR_CMR|SO_4003 [details] [associations]
symbol:SO_4003 "response regulator" species:211586
"Shewanella oneidensis MR-1" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR003607 InterPro:IPR006674 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 SMART:SM00471 GO:GO:0006355 GO:GO:0035556
GO:GO:0046872 GO:GO:0008152 GO:GO:0005622 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0008081 Gene3D:1.10.3210.10 HSSP:Q9A5I4
HOGENOM:HOG000266481 KO:K07814 RefSeq:NP_719533.1
ProteinModelPortal:Q8EAA5 GeneID:1171631 KEGG:son:SO_4003
PATRIC:23527676 OMA:FVTAKTD ProtClustDB:CLSK577304 Uniprot:Q8EAA5
Length = 357
Score = 89 (36.4 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 23/85 (27%), Positives = 45/85 (52%)
Query: 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSEN--VPSRISRCLEEGAEEFFLK 136
+L++ D MP M G+ ++K + R IP++ ++++ V R E GA ++ K
Sbjct: 53 DLILLDVMMPEMDGFQTCIRLKHNPLTRHIPIIFVTAKTDIVDERTG--FELGAVDYISK 110
Query: 137 PVRLSDLN-KLKPHLMKTKIKDQIK 160
PV+ + L ++K HL +Q++
Sbjct: 111 PVKPAILEARVKTHLTLASRANQLE 135
Score = 57 (25.1 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKAL 52
VL VDDS + +++ LL + Y + SG+KAL
Sbjct: 10 VLVVDDSADNIQILHGLL-SDKYSIRAATSGAKAL 43
>TIGR_CMR|SPO_1892 [details] [associations]
symbol:SPO_1892 "C4-dicarboxylate transport
transcriptional regulatory protein DctD" species:246200 "Ruegeria
pomeroyi DSS-3" [GO:0000156 "phosphorelay response regulator
activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0015740 "C4-dicarboxylate transport"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0035556 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000058489 InterPro:IPR025662
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00688
RefSeq:YP_167129.1 ProteinModelPortal:Q5LS76 DNASU:3193394
GeneID:3193394 KEGG:sil:SPO1892 PATRIC:23377117 OMA:IDNTMRR
ProtClustDB:CLSK933667 Uniprot:Q5LS76
Length = 444
Score = 95 (38.5 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 26/70 (37%), Positives = 40/70 (57%)
Query: 80 LVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSE-NVPSRISRCLEEGAEEFFLKPV 138
+VI+D MPGM G LKK+ + S +PV++++ +VP + + GA +F KP
Sbjct: 51 IVISDIKMPGMDGMQFLKKLMGADS--SLPVIMITGHGDVPMAVE-AMRVGAFDFLEKPF 107
Query: 139 ---RLSDLNK 145
R+SDL K
Sbjct: 108 NPDRMSDLAK 117
Score = 52 (23.4 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLG 56
+ VDD R+ I + L S Y T S +AL+ LG
Sbjct: 7 IAIVDDEQDMRQSISQWLALSGYDTETFASAEEALKVLG 45
>TIGR_CMR|GSU_2581 [details] [associations]
symbol:GSU_2581 "sigma-54 dependent transcriptional
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0035556 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025944 PROSITE:PS00688 HSSP:P06143 RefSeq:NP_953627.1
ProteinModelPortal:Q74A10 GeneID:2687775 KEGG:gsu:GSU2581
PATRIC:22028017 OMA:LTERIMA ProtClustDB:CLSK763211
BioCyc:GSUL243231:GH27-2558-MONOMER Uniprot:Q74A10
Length = 456
Score = 87 (35.7 bits), Expect = 0.00055, Sum P(2) = 0.00055
Identities = 17/60 (28%), Positives = 34/60 (56%)
Query: 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137
V+L+I+D M GM G +LL +++E ++PV+++++ + GA ++ KP
Sbjct: 48 VDLLISDLIMEGMNGLELLDRVRERYP--NVPVIVVTARGSVESAVEAMRRGAYDYLAKP 105
Score = 62 (26.9 bits), Expect = 0.00055, Sum P(2) = 0.00055
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFL 55
+LAVDD + ++E LL + + T SG++AL L
Sbjct: 6 ILAVDDDELSLLMLENLLADAGFAPLTAVSGAQALALL 43
>TIGR_CMR|CJE_1358 [details] [associations]
symbol:CJE_1358 "DNA-binding response regulator"
species:195099 "Campylobacter jejuni RM1221" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 PIR:A81329 RefSeq:YP_179345.1
ProteinModelPortal:Q5HTP0 STRING:Q5HTP0 GeneID:3231864
KEGG:cjr:CJE1358 PATRIC:20044514 OMA:ACIFEEI ProtClustDB:CLSK879148
BioCyc:CJEJ195099:GJC0-1384-MONOMER Uniprot:Q5HTP0
Length = 221
Score = 87 (35.7 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 22/82 (26%), Positives = 44/82 (53%)
Query: 71 NMHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGA 130
+M E +L I D +P G+ LLK++++S + P + M+S N + + + + G
Sbjct: 40 DMAYERYFDLWILDVKVPLGDGFSLLKELRKSG--KQTPAIFMTSLNTTNDLKQGFDAGC 97
Query: 131 EEFFLKPVRLSDLNKLKPHLMK 152
+++ KP L++L+ L+K
Sbjct: 98 DDYIKKPFELAELSIRVKALLK 119
Score = 52 (23.4 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALE 53
+L ++D + ++IE L Y+V D+ +AL+
Sbjct: 5 ILLLEDDLSLSEIIEEFLNDEGYEVFLCDNAQEALD 40
>TIGR_CMR|GSU_1320 [details] [associations]
symbol:GSU_1320 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 KO:K02481
HSSP:P06143 RefSeq:NP_952373.2 GeneID:2686471 KEGG:gsu:GSU1320
PATRIC:22025417 ProtClustDB:CLSK828298
BioCyc:GSUL243231:GH27-1307-MONOMER Uniprot:Q74DJ6
Length = 461
Score = 86 (35.3 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 80 LVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137
LV+TD MPGM G+ LL++IK S D V+++++ ++ GA ++ KP
Sbjct: 55 LVVTDLKMPGMGGFRLLQEIKGRSP--DTAVIVITAFGAVETAVDAMKAGAYDYITKP 110
Score = 63 (27.2 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKAL 52
VL VDD + R+++E L+ Y V T SG + L
Sbjct: 11 VLIVDDDVSLRRVLEYNLQEEGYDVITAGSGEEGL 45
>TIGR_CMR|GSU_1220 [details] [associations]
symbol:GSU_1220 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR007831 Pfam:PF00072 Pfam:PF05157 PROSITE:PS50110
SMART:SM00448 GO:GO:0005524 GO:GO:0006355 GO:GO:0035556
GO:GO:0006810 GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 RefSeq:NP_952273.1
ProteinModelPortal:Q74DU5 DNASU:2688249 GeneID:2688249
KEGG:gsu:GSU1220 PATRIC:22025211 HOGENOM:HOG000134726 OMA:PIRIVTR
ProtClustDB:CLSK828245 BioCyc:GSUL243231:GH27-1212-MONOMER
Uniprot:Q74DU5
Length = 277
Score = 106 (42.4 bits), Expect = 0.00060, P = 0.00060
Identities = 19/61 (31%), Positives = 37/61 (60%)
Query: 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPV 138
+L+I D MP M G+ L++ ++ + ++ D P+++++S+ R LE G +F KPV
Sbjct: 198 DLIICDSVMPRMDGFSLMRAVRSNPTIADTPMILLTSKATGEDEQRALEAGFIDFIAKPV 257
Query: 139 R 139
+
Sbjct: 258 Q 258
>TIGR_CMR|GSU_2313 [details] [associations]
symbol:GSU_2313 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001054
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
Pfam:PF00990 GO:GO:0006355 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR SUPFAM:SSF55073 GO:GO:0016849
GO:GO:0009190 InterPro:IPR000160 SMART:SM00267 TIGRFAMs:TIGR00254
PROSITE:PS50887 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HSSP:P08402 HOGENOM:HOG000167205 RefSeq:NP_953362.1
ProteinModelPortal:Q74AN9 GeneID:2687341 KEGG:gsu:GSU2313
PATRIC:22027481 OMA:ARYRYLC ProtClustDB:CLSK763191
BioCyc:GSUL243231:GH27-2319-MONOMER Uniprot:Q74AN9
Length = 301
Score = 88 (36.0 bits), Expect = 0.00064, Sum P(2) = 0.00064
Identities = 17/65 (26%), Positives = 41/65 (63%)
Query: 80 LVITDYCMPGMTGYDLLKKIKESSSLRDIP-VVIMSSENVPSRISRCLEEGAEEFFLKPV 138
L + D+ MP M G +++++++ S+ +P +++++++N + R L+ GA+++ KP
Sbjct: 48 LAVLDWVMPVMDGVEVIRQVRARSA-EHLPYILLLTAKNGTDDVIRGLDAGADDYVGKPF 106
Query: 139 RLSDL 143
L +L
Sbjct: 107 SLGEL 111
Score = 55 (24.4 bits), Expect = 0.00064, Sum P(2) = 0.00064
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFL 55
+L DD + R ++ L+K Y V G++A E L
Sbjct: 3 ILIADDDVTSRTMLTGLMKRWGYDVVEAIDGAQAWEEL 40
>TIGR_CMR|GSU_1286 [details] [associations]
symbol:GSU_1286 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 RefSeq:NP_952339.1
ProteinModelPortal:Q74DN0 GeneID:2686542 KEGG:gsu:GSU1286
PATRIC:22025343 OMA:CMDIMMP ProtClustDB:CLSK2522233
BioCyc:GSUL243231:GH27-1254-MONOMER Uniprot:Q74DN0
Length = 131
Score = 93 (37.8 bits), Expect = 0.00064, P = 0.00064
Identities = 35/139 (25%), Positives = 65/139 (46%)
Query: 19 LAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGV 78
L V+D I RK+++ LL TS + G +A++ L D+ H Y
Sbjct: 4 LIVEDDFISRKIMKELL-TSLGECDIATDGEEAVQAFRLALDE----HRPY--------- 49
Query: 79 NLVITDYCMPGMTGYDLLKKIKES------SSLRDIPVVIMSSENVPSRISRCLEEG-AE 131
+LV D MP M G++ L++I+E + +++ V++ ++ + P + G A
Sbjct: 50 DLVCMDIMMPNMDGHEALEQIREIERGMGLNGAQEVKVIMTTALDDPKNVVEAFYRGGAT 109
Query: 132 EFFLKPVRLSDLNK-LKPH 149
+ +KP+ L K ++ H
Sbjct: 110 SYLVKPITKQRLMKEIRSH 128
>UNIPROTKB|Q11156 [details] [associations]
symbol:regX3 "Sensory transduction protein regX3"
species:1773 "Mycobacterium tuberculosis" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0009405 "pathogenesis"
evidence=IDA] [GO:0019217 "regulation of fatty acid metabolic
process" evidence=IDA] [GO:0019220 "regulation of phosphate
metabolic process" evidence=IDA] [GO:0080134 "regulation of
response to stress" evidence=IDA] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0009405
GO:GO:0006355 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0019217 GO:GO:0006351
EMBL:BX842573 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034819 SUPFAM:SSF46894
GO:GO:0080134 GO:GO:0019220 EMBL:Y13628 PIR:F70744
RefSeq:NP_215005.1 RefSeq:NP_334919.1 RefSeq:YP_006513821.1
PDB:2OQR PDBsum:2OQR ProteinModelPortal:Q11156 SMR:Q11156
PRIDE:Q11156 EnsemblBacteria:EBMYCT00000001447
EnsemblBacteria:EBMYCT00000072066 GeneID:13318362 GeneID:887195
GeneID:923874 KEGG:mtc:MT0510 KEGG:mtu:Rv0491 KEGG:mtv:RVBD_0491
PATRIC:18122830 TubercuList:Rv0491 KO:K07776 OMA:DVDSHTV
ProtClustDB:CLSK790554 EvolutionaryTrace:Q11156 Uniprot:Q11156
Length = 227
Score = 96 (38.9 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 22/69 (31%), Positives = 43/69 (62%)
Query: 77 GVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRC--LEEGAEEFF 134
G ++V+ D +PGM+G D+ K+++ SS +PV+++++ + S I + LE GA+++
Sbjct: 45 GADIVLLDLMLPGMSGTDVCKQLRARSS---VPVIMVTARD--SEIDKVVGLELGADDYV 99
Query: 135 LKPVRLSDL 143
KP +L
Sbjct: 100 TKPYSAREL 108
Score = 40 (19.1 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 18 VLAVDD--SIIDRKLIERLLKTSSYQVTTVDSGSKAL-EF 54
VL V+D S+ D + LL+ ++ T V G AL EF
Sbjct: 4 VLIVEDEESLADP--LAFLLRKEGFEATVVTDGPAALAEF 41
>UNIPROTKB|Q9KSB0 [details] [associations]
symbol:VC_1349 "Sensory box sensor histidine
kinase/response regulator" species:243277 "Vibrio cholerae O1
biovar El Tor str. N16961" [GO:0000155 "phosphorelay sensor kinase
activity" evidence=ISS] [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0023014 "signal transduction
by phosphorylation" evidence=ISS] [GO:0035556 "intracellular signal
transduction" evidence=ISS] InterPro:IPR000014 InterPro:IPR000700
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003661
InterPro:IPR004358 InterPro:IPR008207 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF01627 Pfam:PF02518 PRINTS:PR00344
PROSITE:PS50110 PROSITE:PS50112 PROSITE:PS50113 PROSITE:PS50894
SMART:SM00073 SMART:SM00091 SMART:SM00387 SMART:SM00388
SMART:SM00448 InterPro:IPR005467 InterPro:IPR001610 GO:GO:0005524
GO:GO:0016020 GO:GO:0006355 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0005622 SMART:SM00086 TIGRFAMs:TIGR00229 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P39928 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 Gene3D:1.20.120.160 SUPFAM:SSF47226
InterPro:IPR013656 Pfam:PF08448 PIR:H82211 RefSeq:NP_230993.1
ProteinModelPortal:Q9KSB0 DNASU:2614803 GeneID:2614803
KEGG:vch:VC1349 PATRIC:20081774 OMA:NDSARNI ProtClustDB:CLSK794089
Uniprot:Q9KSB0
Length = 1331
Score = 95 (38.5 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 28/105 (26%), Positives = 48/105 (45%)
Query: 55 LGLHEDDGQSSHSVYPNMHQEV-------GVNLVITDYCMPGMTGYDLLKKIKESSSLRD 107
LGL +D G + V N QE +LV+ D MP M G + I+ +
Sbjct: 1008 LGLLQDTGLNV--VVANHGQEALERLEHADFDLVLMDMQMPVMDGITATEHIRANPRWHS 1065
Query: 108 IPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMK 152
+P+V M++ + I RCL+ G + KP+ + ++ H ++
Sbjct: 1066 LPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQVLRHFLQ 1110
Score = 62 (26.9 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKAL 52
VL VDD+ R +++ LL + V TV +G +AL
Sbjct: 854 VLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEAL 888
>TIGR_CMR|VC_1349 [details] [associations]
symbol:VC_1349 "sensory box sensor histidine
kinase/response regulator" species:686 "Vibrio cholerae O1 biovar
El Tor" [GO:0000155 "phosphorelay sensor kinase activity"
evidence=ISS] [GO:0000156 "phosphorelay response regulator
activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR000014
InterPro:IPR000700 InterPro:IPR001789 InterPro:IPR003594
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR008207
InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512 Pfam:PF01627
Pfam:PF02518 PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50112
PROSITE:PS50113 PROSITE:PS50894 SMART:SM00073 SMART:SM00091
SMART:SM00387 SMART:SM00388 SMART:SM00448 InterPro:IPR005467
InterPro:IPR001610 GO:GO:0005524 GO:GO:0016020 GO:GO:0006355
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005622 SMART:SM00086
TIGRFAMs:TIGR00229 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HSSP:P39928 GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 Gene3D:1.20.120.160
SUPFAM:SSF47226 InterPro:IPR013656 Pfam:PF08448 PIR:H82211
RefSeq:NP_230993.1 ProteinModelPortal:Q9KSB0 DNASU:2614803
GeneID:2614803 KEGG:vch:VC1349 PATRIC:20081774 OMA:NDSARNI
ProtClustDB:CLSK794089 Uniprot:Q9KSB0
Length = 1331
Score = 95 (38.5 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 28/105 (26%), Positives = 48/105 (45%)
Query: 55 LGLHEDDGQSSHSVYPNMHQEV-------GVNLVITDYCMPGMTGYDLLKKIKESSSLRD 107
LGL +D G + V N QE +LV+ D MP M G + I+ +
Sbjct: 1008 LGLLQDTGLNV--VVANHGQEALERLEHADFDLVLMDMQMPVMDGITATEHIRANPRWHS 1065
Query: 108 IPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMK 152
+P+V M++ + I RCL+ G + KP+ + ++ H ++
Sbjct: 1066 LPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQVLRHFLQ 1110
Score = 62 (26.9 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKAL 52
VL VDD+ R +++ LL + V TV +G +AL
Sbjct: 854 VLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEAL 888
>TIGR_CMR|GSU_1879 [details] [associations]
symbol:GSU_1879 "DNA-binding response regulator"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_952928.1 ProteinModelPortal:Q74BZ8 GeneID:2688525
KEGG:gsu:GSU1879 PATRIC:22026623 OMA:SHVESGE ProtClustDB:CLSK828616
BioCyc:GSUL243231:GH27-1891-MONOMER Uniprot:Q74BZ8
Length = 238
Score = 81 (33.6 bits), Expect = 0.00071, Sum P(2) = 0.00071
Identities = 16/64 (25%), Positives = 41/64 (64%)
Query: 80 LVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSE-NVPSRISRCLEEGAEEFFLKPV 138
L+I D +PG+ G+ + ++++ + + +P++I+++ + RI+ L+ GA+++ KP
Sbjct: 52 LIILDVMLPGIDGFTVCERVRATDAR--VPILILTARADDGDRITG-LDRGADDYLTKPF 108
Query: 139 RLSD 142
L++
Sbjct: 109 NLNE 112
Score = 60 (26.2 bits), Expect = 0.00071, Sum P(2) = 0.00071
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 13 ESQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFL 55
E + H+L V+D I + I L+ Y+V+ V+SG ALE L
Sbjct: 3 EDKPHILLVEDEIHLARGICFNLEMEGYRVSHVESGEAALERL 45
>TIGR_CMR|GSU_1316 [details] [associations]
symbol:GSU_1316 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR003018
InterPro:IPR001789 Pfam:PF00072 Pfam:PF13185 PROSITE:PS50110
SMART:SM00065 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 RefSeq:NP_952369.1
ProteinModelPortal:Q74DK0 DNASU:2685737 GeneID:2685737
KEGG:gsu:GSU1316 PATRIC:22025407 HOGENOM:HOG000276092 OMA:NMVLTDI
ProtClustDB:CLSK828294 BioCyc:GSUL243231:GH27-1295-MONOMER
Uniprot:Q74DK0
Length = 324
Score = 106 (42.4 bits), Expect = 0.00082, P = 0.00082
Identities = 34/104 (32%), Positives = 53/104 (50%)
Query: 41 QVTTVDSGSKALEFLGLH-EDDGQSSHSVYPNMH--QEVGV---NLVITDYCMPGMTGYD 94
QV VD + + F+ E+ G SV EV ++++TD +PGM+G +
Sbjct: 8 QVLVVDESAPSRAFIASTLENGGYIVTSVASGEEAVHEVNAAPFDILVTDINLPGMSGLN 67
Query: 95 LLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPV 138
LLK +K+S D+ VVI++S + L GA +F +KPV
Sbjct: 68 LLKLLKDS--FPDLEVVIVTSNASSFTAIKALRLGAYDFIIKPV 109
>TIGR_CMR|BA_1497 [details] [associations]
symbol:BA_1497 "DNA-binding response regulator ResD"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009060 "aerobic respiration"
evidence=ISS] [GO:0009061 "anaerobic respiration" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402 RefSeq:NP_843949.1
RefSeq:YP_018120.1 RefSeq:YP_027655.1 ProteinModelPortal:Q81SZ6
DNASU:1087158 EnsemblBacteria:EBBACT00000009602
EnsemblBacteria:EBBACT00000013896 EnsemblBacteria:EBBACT00000020931
GeneID:1087158 GeneID:2818509 GeneID:2850870 KEGG:ban:BA_1497
KEGG:bar:GBAA_1497 KEGG:bat:BAS1386 KO:K07775 OMA:VWHYEFF
ProtClustDB:CLSK873069 BioCyc:BANT260799:GJAJ-1460-MONOMER
BioCyc:BANT261594:GJ7F-1522-MONOMER Uniprot:Q81SZ6
Length = 238
Score = 72 (30.4 bits), Expect = 0.00091, Sum P(2) = 0.00091
Identities = 13/59 (22%), Positives = 33/59 (55%)
Query: 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137
+L++ D MPG G ++ K ++E + P+++++++ + E G +++ +KP
Sbjct: 50 DLILLDLMMPGKDGIEVCKGVREKKAT---PIIMLTAKGEEVNRVQGFEVGTDDYIVKP 105
Score = 70 (29.7 bits), Expect = 0.00091, Sum P(2) = 0.00091
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 13 ESQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHED 60
E++ +L VDD R+L++ L+ Y + D+G ALE + L D
Sbjct: 2 ENESRILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALE-MALQND 48
>TIGR_CMR|DET_0170 [details] [associations]
symbol:DET_0170 "DNA-binding response regulator"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034819
RefSeq:YP_180918.1 ProteinModelPortal:Q3ZA31 STRING:Q3ZA31
GeneID:3230558 KEGG:det:DET0170 PATRIC:21607423 OMA:RIRVNIR
ProtClustDB:CLSK741609 BioCyc:DETH243164:GJNF-170-MONOMER
Uniprot:Q3ZA31
Length = 232
Score = 103 (41.3 bits), Expect = 0.00097, P = 0.00097
Identities = 22/63 (34%), Positives = 40/63 (63%)
Query: 81 VITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRL 140
+I D +P ++GY++L++I+ S L PV+I++ N S I + L GA+++ +KP R
Sbjct: 50 IILDIGLPDISGYEVLRQIRLFSEL---PVIILTIRNEESDIVKALSLGADDYLVKPFRQ 106
Query: 141 SDL 143
+L
Sbjct: 107 MEL 109
>ASPGD|ASPL0000049453 [details] [associations]
symbol:tcsB species:162425 "Emericella nidulans"
[GO:0004673 "protein histidine kinase activity" evidence=IGI;ISS]
[GO:0000156 "phosphorelay response regulator activity"
evidence=IGI;ISS] [GO:0007234 "osmosensory signaling via
phosphorelay pathway" evidence=IGI;ISS] [GO:0006468 "protein
phosphorylation" evidence=IGI;ISS] [GO:0005886 "plasma membrane"
evidence=IGI;ISS] [GO:0000155 "phosphorelay sensor kinase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005887 "integral to plasma membrane"
evidence=IEA] [GO:0005034 "osmosensor activity" evidence=IEA]
[GO:0009927 "histidine phosphotransfer kinase activity"
evidence=IEA] [GO:0018106 "peptidyl-histidine phosphorylation"
evidence=IEA] [GO:0006469 "negative regulation of protein kinase
activity" evidence=IEA] [GO:0070795 "positive regulation of
conidiophore development" evidence=IEA] [GO:0070787 "conidiophore
development" evidence=IEA] [GO:0046777 "protein
autophosphorylation" evidence=IEA] InterPro:IPR001789
InterPro:IPR003594 InterPro:IPR003661 InterPro:IPR004358
InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512 Pfam:PF02518
PRINTS:PR00344 PROSITE:PS50110 SMART:SM00387 SMART:SM00388
SMART:SM00448 InterPro:IPR005467 GO:GO:0005524 GO:GO:0005887
GO:GO:0006355 EMBL:BN001307 EMBL:AACD01000029 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 GO:GO:0000161 KO:K11231
OrthoDB:EOG4N8VCT EMBL:AB036054 RefSeq:XP_659404.1
ProteinModelPortal:Q9P4U6 STRING:Q9P4U6
EnsemblFungi:CADANIAT00008448 GeneID:2874961 KEGG:ani:AN1800.2
HOGENOM:HOG000185666 OMA:DQHRILQ Uniprot:Q9P4U6
Length = 1065
Score = 111 (44.1 bits), Expect = 0.00098, P = 0.00098
Identities = 31/133 (23%), Positives = 62/133 (46%)
Query: 15 QFHVLAVDDSIIDRKLIERLLKTSS-YQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMH 73
+ L +D++++++++ R+L Y VT V G +A + +V NM
Sbjct: 932 KIRALVAEDNVVNQEVVLRMLALEDVYDVTVVKDGQEAYD-------------TVKANME 978
Query: 74 QEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEF 133
+ +L+ D MP + G + + I++ P+V +S+ + S I C+ G + F
Sbjct: 979 EGKVFDLIFMDIQMPNLDGIESTRLIRQMGC--SAPIVALSAFSEDSNIKDCMNSGMDMF 1036
Query: 134 FLKPVRLSDLNKL 146
KP+R L ++
Sbjct: 1037 ISKPIRRPALKQV 1049
>UNIPROTKB|Q9P4U6 [details] [associations]
symbol:tcsB "Two-component system protein B" species:227321
"Aspergillus nidulans FGSC A4" [GO:0000155 "phosphorelay sensor
kinase activity" evidence=IGI] [GO:0000156 "phosphorelay response
regulator activity" evidence=IGI] [GO:0000161 "MAPK cascade
involved in osmosensory signaling pathway" evidence=TAS]
[GO:0005887 "integral to plasma membrane" evidence=NAS] [GO:0023014
"signal transduction by phosphorylation" evidence=IGI]
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003661
InterPro:IPR004358 InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512
Pfam:PF02518 PRINTS:PR00344 PROSITE:PS50110 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 GO:GO:0005524
GO:GO:0005887 GO:GO:0006355 EMBL:BN001307 EMBL:AACD01000029
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 GO:GO:0000161
KO:K11231 OrthoDB:EOG4N8VCT EMBL:AB036054 RefSeq:XP_659404.1
ProteinModelPortal:Q9P4U6 STRING:Q9P4U6
EnsemblFungi:CADANIAT00008448 GeneID:2874961 KEGG:ani:AN1800.2
HOGENOM:HOG000185666 OMA:DQHRILQ Uniprot:Q9P4U6
Length = 1065
Score = 111 (44.1 bits), Expect = 0.00098, P = 0.00098
Identities = 31/133 (23%), Positives = 62/133 (46%)
Query: 15 QFHVLAVDDSIIDRKLIERLLKTSS-YQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMH 73
+ L +D++++++++ R+L Y VT V G +A + +V NM
Sbjct: 932 KIRALVAEDNVVNQEVVLRMLALEDVYDVTVVKDGQEAYD-------------TVKANME 978
Query: 74 QEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEF 133
+ +L+ D MP + G + + I++ P+V +S+ + S I C+ G + F
Sbjct: 979 EGKVFDLIFMDIQMPNLDGIESTRLIRQMGC--SAPIVALSAFSEDSNIKDCMNSGMDMF 1036
Query: 134 FLKPVRLSDLNKL 146
KP+R L ++
Sbjct: 1037 ISKPIRRPALKQV 1049
>DICTYBASE|DDB_G0282377 [details] [associations]
symbol:dhkM "histidine kinase M" species:44689
"Dictyostelium discoideum" [GO:0048102 "autophagic cell death"
evidence=IMP] [GO:0035556 "intracellular signal transduction"
evidence=IEA] [GO:0016772 "transferase activity, transferring
phosphorus-containing groups" evidence=IEA] [GO:0016310
"phosphorylation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0000156 "phosphorelay
response regulator activity" evidence=IEA] [GO:0004673 "protein
histidine kinase activity" evidence=IEA] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0016301 "kinase activity" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0016020
"membrane" evidence=IEA] [GO:0007165 "signal transduction"
evidence=IEA] [GO:0004871 "signal transducer activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR004358
Pfam:PF00072 Pfam:PF02518 PRINTS:PR00344 PROSITE:PS50110
SMART:SM00387 SMART:SM00448 InterPro:IPR005467
dictyBase:DDB_G0282377 GO:GO:0016021 GO:GO:0005524 GO:GO:0006355
GO:GO:0035556 EMBL:AAFI02000047 GenomeReviews:CM000152_GR
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HSSP:P39928 Gene3D:3.30.565.10 SUPFAM:SSF55874 PROSITE:PS50109
eggNOG:COG0642 GO:GO:0004673 GO:GO:0048102 EMBL:AF362374
RefSeq:XP_640034.1 ProteinModelPortal:Q54SK5
EnsemblProtists:DDB0220020 GeneID:8623560 KEGG:ddi:DDB_G0282377
OMA:NTSTINP Uniprot:Q54SK5
Length = 2388
Score = 114 (45.2 bits), Expect = 0.00099, P = 0.00098
Identities = 34/141 (24%), Positives = 70/141 (49%)
Query: 17 HVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEV 76
++L V+D++++ K+ +L+ +++V +G A+E + + SHS +
Sbjct: 2262 NILLVEDNLVNAKIAMTVLRKHNFRVELSKNGQLAMERI-------KQSHSSF------- 2307
Query: 77 GVNLVITDYCMP---GMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEF 133
+L++ D MP G+T L +K + L+ +P++ ++++ + CLE G EF
Sbjct: 2308 --DLILMDIHMPVMDGITCSKLTRKFETEHGLKHLPIIALTADATTGHKNLCLEAGCNEF 2365
Query: 134 FLKPVRLSDLNKLKPHLMKTK 154
KP+ + L L L+ K
Sbjct: 2366 MSKPLDYALLISLLKKLVFNK 2386
>TIGR_CMR|BA_2212 [details] [associations]
symbol:BA_2212 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815 HSSP:Q9WYN0
RefSeq:NP_844604.1 RefSeq:YP_018854.1 RefSeq:YP_028319.1
ProteinModelPortal:Q81R46 DNASU:1085543
EnsemblBacteria:EBBACT00000012844 EnsemblBacteria:EBBACT00000018535
EnsemblBacteria:EBBACT00000022147 GeneID:1085543 GeneID:2815122
GeneID:2848498 KEGG:ban:BA_2212 KEGG:bar:GBAA_2212 KEGG:bat:BAS2056
OMA:IRATESK ProtClustDB:CLSK918052
BioCyc:BANT260799:GJAJ-2124-MONOMER
BioCyc:BANT261594:GJ7F-2201-MONOMER Uniprot:Q81R46
Length = 227
Score = 94 (38.1 bits), Expect = 0.00099, Sum P(2) = 0.00099
Identities = 16/66 (24%), Positives = 47/66 (71%)
Query: 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSS-ENVPSRISRCLEEGAEEFFLKP 137
+L++ D +P ++G ++L++I+ +++ IP++++++ ++V ++S L++GA ++ KP
Sbjct: 48 DLILLDVMLPNISGLEVLRRIRLKNAV--IPIILLTARDSVVDKVSG-LDQGASDYITKP 104
Query: 138 VRLSDL 143
++ +L
Sbjct: 105 FQIEEL 110
Score = 41 (19.5 bits), Expect = 0.00099, Sum P(2) = 0.00099
Identities = 9/39 (23%), Positives = 21/39 (53%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLG 56
+L V+D ++++ L+ Y+ +G++A+E G
Sbjct: 5 ILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMEKFG 43
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.133 0.368 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 241 179 0.00089 109 3 11 22 0.46 32
31 0.39 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 178
No. of states in DFA: 556 (59 KB)
Total size of DFA: 135 KB (2086 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 16.68u 0.23s 16.91t Elapsed: 00:00:01
Total cpu time: 16.69u 0.23s 16.92t Elapsed: 00:00:01
Start: Fri May 10 04:06:17 2013 End: Fri May 10 04:06:18 2013
WARNINGS ISSUED: 1