BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026239
(241 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3M6M|D Chain D, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
pdb|3M6M|E Chain E, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
pdb|3M6M|F Chain F, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
Length = 143
Score = 67.0 bits (162), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 63/125 (50%), Gaps = 20/125 (16%)
Query: 16 FHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQE 75
+L DD +R +++RLL+ + ++V V+ + L+ + + D
Sbjct: 15 MRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAEEDYDA------------- 61
Query: 76 VGVNLVITDYCMPGMTGYDLLKKIK--ESSSLRDIPVVIMSSENVPSRISRCLEEGAEEF 133
VI D MPGM G D+LK+++ ++S +R PVV++S++ P I C + GA F
Sbjct: 62 -----VIVDLHMPGMNGLDMLKQLRVMQASGMRYTPVVVLSADVTPEAIRACEQAGARAF 116
Query: 134 FLKPV 138
KPV
Sbjct: 117 LAKPV 121
>pdb|3GT7|A Chain A, Crystal Structure Of Signal Receiver Domain Of Signal
Transduction Histidine Kinase From Syntrophus
Aciditrophicus
Length = 154
Score = 63.5 bits (153), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 18/122 (14%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVG 77
+L V+DS + ++ +L+ + YQ V +G +A+ FL L D
Sbjct: 10 ILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLTRPD---------------- 53
Query: 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137
L+I+D MP M GY L + +K LR IPV++++ + P + R LE GA++F KP
Sbjct: 54 --LIISDVLMPEMDGYALCRWLKGQPDLRTIPVILLTILSDPRDVVRSLECGADDFITKP 111
Query: 138 VR 139
+
Sbjct: 112 CK 113
>pdb|3H1G|A Chain A, Crystal Structure Of Chey Mutant T84a Of Helicobacter
Pylori
Length = 129
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 68/144 (47%), Gaps = 26/144 (18%)
Query: 14 SQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTTVDSGSKALEFLGLHEDDGQSSHSVYPNM 72
+L VDDS R++I+ L Y+ V + G +A E L + D
Sbjct: 4 GSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANAD------------ 51
Query: 73 HQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEE 132
++ITD+ MP M G DL+KK++ S ++IP++++++E + + L+ G
Sbjct: 52 -----TKVLITDWNMPEMNGLDLVKKVRSDSRFKEIPIIMITAEGGKAEVITALKAGVNN 106
Query: 133 FFLKPVRLSDLNKLKPHLMKTKIK 156
+ +KP P ++K K++
Sbjct: 107 YIVKP--------FTPQVLKEKLE 122
>pdb|3GWG|A Chain A, Crystal Structure Of Chey Of Helicobacter Pylori
pdb|3H1E|A Chain A, Crystal Structure Of Mg(2+) And Beh(3)(-)-Bound Chey Of
Heli Pylori
Length = 129
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 68/144 (47%), Gaps = 26/144 (18%)
Query: 14 SQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTTVDSGSKALEFLGLHEDDGQSSHSVYPNM 72
+L VDDS R++I+ L Y+ V + G +A E L + D
Sbjct: 4 GSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANAD------------ 51
Query: 73 HQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEE 132
++ITD+ MP M G DL+KK++ S ++IP++++++E + + L+ G
Sbjct: 52 -----TKVLITDWNMPEMNGLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNN 106
Query: 133 FFLKPVRLSDLNKLKPHLMKTKIK 156
+ +KP P ++K K++
Sbjct: 107 YIVKP--------FTPQVLKEKLE 122
>pdb|3DGE|C Chain C, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGE|D Chain D, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGF|C Chain C, Structure Of A Histidine Kinase-Response Regulator Complex
Reveals Insights Into Two-Component Signaling And A
Novel Cis- Autophosphorylation Mechanism
Length = 122
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 63/134 (47%), Gaps = 18/134 (13%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVG 77
VL VDDS + RK++ LK Y+V ++G ALE L E
Sbjct: 5 VLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLS------------------EFT 46
Query: 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137
+L++ D MP M G+ +LKK++E + IPV++++++ S L GA + KP
Sbjct: 47 PDLIVLDIMMPVMDGFTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKP 106
Query: 138 VRLSDLNKLKPHLM 151
S + HL+
Sbjct: 107 FSPSQFIEEVKHLL 120
>pdb|3H1F|A Chain A, Crystal Structure Of Chey Mutant D53a Of Helicobacter
Pylori
Length = 129
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 67/144 (46%), Gaps = 26/144 (18%)
Query: 14 SQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTTVDSGSKALEFLGLHEDDGQSSHSVYPNM 72
+L VDDS R++I+ L Y+ V + G +A E L + D
Sbjct: 4 GSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANAD------------ 51
Query: 73 HQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEE 132
++IT + MP M G DL+KK++ S ++IP++++++E + + L+ G
Sbjct: 52 -----TKVLITAWNMPEMNGLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNN 106
Query: 133 FFLKPVRLSDLNKLKPHLMKTKIK 156
+ +KP P ++K K++
Sbjct: 107 YIVKP--------FTPQVLKEKLE 122
>pdb|3TO5|A Chain A, High Resolution Structure Of Chey3 From Vibrio Cholerae
Length = 134
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 62/126 (49%), Gaps = 17/126 (13%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVG 77
+L VDD R++++ LL+ + T DDG ++ P M ++
Sbjct: 15 ILIVDDFSTMRRIVKNLLRDLGFNNTQ-------------EADDGLTA---LP-MLKKGD 57
Query: 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137
+ V+TD+ MPGM G DLLK I+ L+ +PV+++++E +I + G + +KP
Sbjct: 58 FDFVVTDWNMPGMQGIDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKP 117
Query: 138 VRLSDL 143
+ L
Sbjct: 118 FTAATL 123
>pdb|1YMV|A Chain A, Signal Transduction Protein Chey Mutant With Phe 14
Replaced By Gly, Ser 15 Replaced By Gly, And Met 17
Replaced By Gly
Length = 129
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 19/132 (14%)
Query: 13 ESQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTTVDSGSKALEFLGLHEDDGQSSHSVYPN 71
+ + L VDD R+++ LLK + V + G AL N
Sbjct: 3 DKELKFLVVDDGGTGRRIVRNLLKELGFNNVEEAEDGVDAL------------------N 44
Query: 72 MHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAE 131
Q G VI+D+ MP M G +LLK I+ ++ +PV+++++E I + GA
Sbjct: 45 KLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGAS 104
Query: 132 EFFLKPVRLSDL 143
+ +KP + L
Sbjct: 105 GYVVKPFTAATL 116
>pdb|3GL9|A Chain A, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|B Chain B, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|C Chain C, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|D Chain D, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
Length = 122
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 62/134 (46%), Gaps = 18/134 (13%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVG 77
VL VDDS + RK++ LK Y+V ++G ALE L E
Sbjct: 5 VLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLS------------------EFT 46
Query: 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137
+L++ MP M G+ +LKK++E + IPV++++++ S L GA + KP
Sbjct: 47 PDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKP 106
Query: 138 VRLSDLNKLKPHLM 151
S + HL+
Sbjct: 107 FSPSQFIEEVKHLL 120
>pdb|2AYZ|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
817-949) Containing Phosphoreceiver Domain
Length = 133
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 20/123 (16%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVG 77
+L VDD I+R+L+ L + YQ T + G AL L +
Sbjct: 11 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNH------------------ 52
Query: 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137
+++V++D MP M GY L ++I++ +PV+ +++ + RCLE G + KP
Sbjct: 53 IDIVLSDVNMPNMDGYRLTQRIRQLGLT--LPVIGVTANALAEEKQRCLESGMDSCLSKP 110
Query: 138 VRL 140
V L
Sbjct: 111 VTL 113
>pdb|2AYX|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
700-949) Containing Linker Region And Phosphoreceiver
Domain
Length = 254
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 20/123 (16%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVG 77
+L VDD I+R+L+ L + YQ T + G AL L +
Sbjct: 132 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNH------------------ 173
Query: 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137
+++V++D MP M GY L ++I++ +PV+ +++ + RCLE G + KP
Sbjct: 174 IDIVLSDVNMPNMDGYRLTQRIRQLG--LTLPVIGVTANALAEEKQRCLESGMDSCLSKP 231
Query: 138 VRL 140
V L
Sbjct: 232 VTL 234
>pdb|2WB4|A Chain A, Activated Diguanylate Cyclase Pled In Complex With
C-Di-Gmp
pdb|2WB4|B Chain B, Activated Diguanylate Cyclase Pled In Complex With
C-Di-Gmp
Length = 459
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 18/121 (14%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVG 77
+L VDD + +L+E L Y+V+T G AL D
Sbjct: 5 ILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDLPD---------------- 48
Query: 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137
+++ D MPGM G+ + +K+K+ + R IPVV++++ + + LE GA +F KP
Sbjct: 49 --IILLDVMMPGMDGFTVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLTKP 106
Query: 138 V 138
+
Sbjct: 107 I 107
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 8/83 (9%)
Query: 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137
V+LVI + G ++ R +PV+ M + R+ + LE G + +P
Sbjct: 196 VDLVIVNAAAKNFDGLRFTAALRSEERTRQLPVLAMVDPDDRGRMVKALEIGVNDILSRP 255
Query: 138 VRLSDLNKLKPHLMKTKIKDQIK 160
+ P + ++K QI+
Sbjct: 256 I--------DPQELSARVKTQIQ 270
>pdb|2FKA|A Chain A, Crystal Structure Of Mg(2+) And Bef(3)(-)-Bound Chey In
Complex With Chez(200-214) Solved From A F432 Crystal
Grown In Caps (Ph 10.5)
pdb|2FLK|A Chain A, Crystal Structure Of Chey In Complex With Chez(200-214)
Solved From A F432 Crystal Grown In Caps (Ph 10.5)
pdb|2FLW|A Chain A, Crystal Structure Of Mg2+ And Bef3- Ound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Hepes (ph 7.5)
pdb|2FMF|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Hepes (ph 7.5)
pdb|2FMH|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Tris (Ph 8.4)
pdb|2FMI|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Tris (Ph 8.4)
pdb|2FMK|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A P2(1)2(1)2 Crystal Grown
In Mes (Ph 6.0)
Length = 129
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 19/132 (14%)
Query: 13 ESQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTTVDSGSKALEFLGLHEDDGQSSHSVYPN 71
+ + L VDD R+++ LLK + V + G AL N
Sbjct: 3 DKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL------------------N 44
Query: 72 MHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAE 131
Q G +I+D+ MP M G +LLK I+ S++ +PV+++++E I + GA
Sbjct: 45 KLQAGGFGFIISDWNMPNMDGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGAS 104
Query: 132 EFFLKPVRLSDL 143
+ +KP + L
Sbjct: 105 GYVVKPFTAATL 116
>pdb|1YMU|A Chain A, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
pdb|1YMU|B Chain B, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
Length = 130
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 19/132 (14%)
Query: 13 ESQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTTVDSGSKALEFLGLHEDDGQSSHSVYPN 71
+ + L VDD R+++ LLK + V + G AL N
Sbjct: 4 DKELKFLVVDDFSTGRRIVRNLLKELGFNNVEEAEDGVDAL------------------N 45
Query: 72 MHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAE 131
Q G VI+D+ MP M G +LLK I+ ++ +PV+++++E I + GA
Sbjct: 46 KLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGAS 105
Query: 132 EFFLKPVRLSDL 143
+ +KP + L
Sbjct: 106 GYVVKPFTAATL 117
>pdb|2CHE|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And Mechanism Of
Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2CHF|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And The Mechanism
Of Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2PL9|A Chain A, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|B Chain B, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|C Chain C, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PMC|A Chain A, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|B Chain B, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|C Chain C, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|D Chain D, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
Length = 128
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 19/132 (14%)
Query: 13 ESQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTTVDSGSKALEFLGLHEDDGQSSHSVYPN 71
+ + L VDD R+++ LLK + V + G AL N
Sbjct: 2 DKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL------------------N 43
Query: 72 MHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAE 131
Q G +I+D+ MP M G +LLK I+ S++ +PV+++++E I + GA
Sbjct: 44 KLQAGGFGFIISDWNMPNMDGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGAS 103
Query: 132 EFFLKPVRLSDL 143
+ +KP + L
Sbjct: 104 GYVVKPFTAATL 115
>pdb|1W25|A Chain A, Response Regulator Pled In Complex With C-digmp
pdb|1W25|B Chain B, Response Regulator Pled In Complex With C-digmp
pdb|2V0N|A Chain A, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
pdb|2V0N|B Chain B, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
Length = 459
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 18/122 (14%)
Query: 17 HVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEV 76
+L VDD + +L+E L Y+V+T G AL D
Sbjct: 3 RILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDLPD--------------- 47
Query: 77 GVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLK 136
+++ D MPGM G+ + +K+K+ + R IPVV++++ + + LE GA +F K
Sbjct: 48 ---IILLDVMMPGMDGFTVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLTK 104
Query: 137 PV 138
P+
Sbjct: 105 PI 106
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 8/83 (9%)
Query: 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137
V+LVI + G ++ R +PV+ M + R+ + LE G + +P
Sbjct: 195 VDLVIVNAAAKNFDGLRFTAALRSEERTRQLPVLAMVDPDDRGRMVKALEIGVNDILSRP 254
Query: 138 VRLSDLNKLKPHLMKTKIKDQIK 160
+ P + ++K QI+
Sbjct: 255 I--------DPQELSARVKTQIQ 269
>pdb|3OLX|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
pdb|3OLX|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
Length = 129
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 19/132 (14%)
Query: 13 ESQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTTVDSGSKALEFLGLHEDDGQSSHSVYPN 71
+ + L VDD R+++ LLK + V + G AL N
Sbjct: 3 DKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL------------------N 44
Query: 72 MHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAE 131
Q G VI+D+ MP M G +LLK I+ ++ +PV++++SE I + GA
Sbjct: 45 KLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTSEAKKENIIAAAQAGAS 104
Query: 132 EFFLKPVRLSDL 143
+ +KP + L
Sbjct: 105 GYVVKPFTAATL 116
>pdb|3HEB|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
From Rhodospirillum Rubrum
pdb|3HEB|B Chain B, Crystal Structure Of Response Regulator Receiver Domain
From Rhodospirillum Rubrum
Length = 152
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 61/123 (49%), Gaps = 11/123 (8%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSY--QVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQE 75
++ ++D + +LIE+ ++ + ++ G+ AL +L + G+ S
Sbjct: 7 IVXIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAG-------- 58
Query: 76 VGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFL 135
LV+ D +P TG D+LK +KE+ R PVVI+++ + I RC + GA +
Sbjct: 59 -RAQLVLLDLNLPDXTGIDILKLVKENPHTRRSPVVILTTTDDQREIQRCYDLGANVYIT 117
Query: 136 KPV 138
KPV
Sbjct: 118 KPV 120
>pdb|1AB6|A Chain A, Structure Of Chey Mutant F14n, V86t
pdb|1AB6|B Chain B, Structure Of Chey Mutant F14n, V86t
Length = 125
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 57/130 (43%), Gaps = 19/130 (14%)
Query: 15 QFHVLAVDDSIIDRKLIERLLKTSSYQ-VTTVDSGSKALEFLGLHEDDGQSSHSVYPNMH 73
+ L VDD+ R+++ LLK + V + G AL N
Sbjct: 1 ELKFLVVDDNSTMRRIVRNLLKELGFNNVEEAEDGVDAL------------------NKL 42
Query: 74 QEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEF 133
Q G VI+D+ MP M G +LLK I+ ++ +PV++ ++E I + GA +
Sbjct: 43 QAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMTTAEAKKENIIAAAQAGASGY 102
Query: 134 FLKPVRLSDL 143
+KP + L
Sbjct: 103 VVKPFTAATL 112
>pdb|2CHY|A Chain A, Three-Dimensional Structure Of Chey, The Response
Regulator Of Bacterial Chemotaxis
Length = 128
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 19/132 (14%)
Query: 13 ESQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTTVDSGSKALEFLGLHEDDGQSSHSVYPN 71
+ + L VDD R+++ LLK + V + G AL N
Sbjct: 2 DKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL------------------N 43
Query: 72 MHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAE 131
Q G +I D+ MP M G +LLK I+ S++ +PV+++++E I + GA
Sbjct: 44 KLQAGGFGFIICDWNMPNMDGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGAS 103
Query: 132 EFFLKPVRLSDL 143
+ +KP + L
Sbjct: 104 GYVVKPFTAATL 115
>pdb|1UDR|A Chain A, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|B Chain B, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|C Chain C, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|D Chain D, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
Length = 129
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 19/132 (14%)
Query: 13 ESQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTTVDSGSKALEFLGLHEDDGQSSHSVYPN 71
+ + L VDD R+++ LLK + V + G AL N
Sbjct: 3 DKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL------------------N 44
Query: 72 MHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAE 131
Q G VI+D+ MP M G +LLK I+ ++ +PV+++++E I + GA
Sbjct: 45 KLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEADAENIKALAQAGAS 104
Query: 132 EFFLKPVRLSDL 143
+ +KP + L
Sbjct: 105 GYVVKPFTAATL 116
>pdb|1CEY|A Chain A, Assignments, Secondary Structure, Global Fold, And
Dynamics Of Chemotaxis Y Protein Using Three-And
Four-Dimensional Heteronuclear (13c,15n) Nmr
Spectroscopy
Length = 128
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 19/132 (14%)
Query: 13 ESQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTTVDSGSKALEFLGLHEDDGQSSHSVYPN 71
+ + L VDD R+++ LLK + V + G AL N
Sbjct: 2 DKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL------------------N 43
Query: 72 MHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAE 131
Q G VI+D+ MP M G +LLK I+ ++ +PV+++++E I + GA
Sbjct: 44 KLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGAS 103
Query: 132 EFFLKPVRLSDL 143
+ +KP + L
Sbjct: 104 GYVVKPFTAATL 115
>pdb|5CHY|A Chain A, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 19/132 (14%)
Query: 13 ESQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTTVDSGSKALEFLGLHEDDGQSSHSVYPN 71
+ + L VDD R+++ LLK + V + G AL N
Sbjct: 2 DKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL------------------N 43
Query: 72 MHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAE 131
Q G VI+D+ MP M G +LLK I+ ++ +PV+++++E I + GA
Sbjct: 44 KLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGAS 103
Query: 132 EFFLKPVRLSDL 143
+ +KP + L
Sbjct: 104 GWVVKPFTAATL 115
>pdb|1DJM|A Chain A, Solution Structure Of Bef3-Activated Chey From Escherichia
Coli
pdb|1KMI|Y Chain Y, Crystal Structure Of An E.Coli Chemotaxis Protein, Chez
Length = 129
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 19/132 (14%)
Query: 13 ESQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTTVDSGSKALEFLGLHEDDGQSSHSVYPN 71
+ + L VDD R+++ LLK + V + G AL N
Sbjct: 3 DKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL------------------N 44
Query: 72 MHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAE 131
Q G VI+D+ MP M G +LLK I+ ++ +PV+++++E I + GA
Sbjct: 45 KLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGAS 104
Query: 132 EFFLKPVRLSDL 143
+ +KP + L
Sbjct: 105 GYVVKPFTAATL 116
>pdb|1EAY|A Chain A, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1EAY|B Chain B, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1A0O|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|E Chain E, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|G Chain G, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1BDJ|A Chain A, Complex Structure Of Hpt Domain And Chey
pdb|1F4V|A Chain A, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|B Chain B, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|C Chain C, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1FFG|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFG|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFS|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFS|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFW|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FFW|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FQW|A Chain A, Crystal Structure Of Activated Chey
pdb|1FQW|B Chain B, Crystal Structure Of Activated Chey
pdb|2B1J|A Chain A, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|2B1J|B Chain B, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|1CHN|A Chain A, Magnesium Binding To The Bacterial Chemotaxis Protein Chey
Results In Large Conformational Changes Involving Its
Functional Surface
pdb|3CHY|A Chain A, Crystal Structure Of Escherichia Coli Chey Refined At 1.7-
Angstrom Resolution
pdb|2LP4|Y Chain Y, Solution Structure Of P1-CheyP2 COMPLEX IN BACTERIAL
CHEMOTAXIS
Length = 128
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 19/132 (14%)
Query: 13 ESQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTTVDSGSKALEFLGLHEDDGQSSHSVYPN 71
+ + L VDD R+++ LLK + V + G AL N
Sbjct: 2 DKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL------------------N 43
Query: 72 MHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAE 131
Q G VI+D+ MP M G +LLK I+ ++ +PV+++++E I + GA
Sbjct: 44 KLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGAS 103
Query: 132 EFFLKPVRLSDL 143
+ +KP + L
Sbjct: 104 GYVVKPFTAATL 115
>pdb|1CYE|A Chain A, Three Dimensional Structure Of Chemotactic Che Y Protein
In Aqueous Solution By Nuclear Magnetic Resonance
Methods
Length = 129
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 19/132 (14%)
Query: 13 ESQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTTVDSGSKALEFLGLHEDDGQSSHSVYPN 71
+ + L VDD R+++ LLK + V + G AL N
Sbjct: 3 DKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL------------------N 44
Query: 72 MHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAE 131
Q G VI+D+ MP M G +LLK I+ ++ +PV+++++E I + GA
Sbjct: 45 KLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGAS 104
Query: 132 EFFLKPVRLSDL 143
+ +KP + L
Sbjct: 105 GYVVKPFTAATL 116
>pdb|3OLW|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
pdb|3OLW|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
Length = 129
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 19/132 (14%)
Query: 13 ESQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTTVDSGSKALEFLGLHEDDGQSSHSVYPN 71
+ + L VDD R+++ LLK + V + G AL N
Sbjct: 3 DKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL------------------N 44
Query: 72 MHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAE 131
Q G VI+D+ MP M G +LLK I+ ++ +PV+++++E I + GA
Sbjct: 45 KLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTTEAKKENIIAAAQAGAS 104
Query: 132 EFFLKPVRLSDL 143
+ +KP + L
Sbjct: 105 GYVVKPFTAATL 116
>pdb|1JBE|A Chain A, 1.08 A Structure Of Apo-Chey Reveals Meta-Active
Conformation
Length = 128
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 19/132 (14%)
Query: 13 ESQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTTVDSGSKALEFLGLHEDDGQSSHSVYPN 71
+ + L VDD R+++ LLK + V + G AL N
Sbjct: 2 DKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL------------------N 43
Query: 72 MHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAE 131
Q G VI+D+ MP M G +LLK I+ ++ +PV+++++E I + GA
Sbjct: 44 KLQAGGYGFVISDWNMPNMDGLELLKTIRAXXAMSALPVLMVTAEAKKENIIAAAQAGAS 103
Query: 132 EFFLKPVRLSDL 143
+ +KP + L
Sbjct: 104 GYVVKPFTAATL 115
>pdb|3MYY|A Chain A, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
pdb|3MYY|B Chain B, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
Length = 128
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 19/126 (15%)
Query: 13 ESQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTTVDSGSKALEFLGLHEDDGQSSHSVYPN 71
+ + L VDD R+++ LLK + V + G AL N
Sbjct: 2 DKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL------------------N 43
Query: 72 MHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAE 131
Q G VI+D+ MP M G +LLK I+ ++ +PV+++++E I + GA
Sbjct: 44 KLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGAS 103
Query: 132 EFFLKP 137
+ +KP
Sbjct: 104 GYVVKP 109
>pdb|1MIH|A Chain A, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
pdb|1MIH|B Chain B, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
Length = 129
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 19/132 (14%)
Query: 13 ESQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTTVDSGSKALEFLGLHEDDGQSSHSVYPN 71
+ + L VDD R+++ LLK + V + G AL N
Sbjct: 3 DKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL------------------N 44
Query: 72 MHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAE 131
Q G VI+D+ MP M G +LLK I+ ++ +PV+++++E I + GA
Sbjct: 45 KLQAGGYGFVISDWRMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGAS 104
Query: 132 EFFLKPVRLSDL 143
+ +KP + L
Sbjct: 105 GYVVKPFTAATL 116
>pdb|1AB5|A Chain A, Structure Of Chey Mutant F14n, V21t
pdb|1AB5|B Chain B, Structure Of Chey Mutant F14n, V21t
Length = 125
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 57/130 (43%), Gaps = 19/130 (14%)
Query: 15 QFHVLAVDDSIIDRKLIERLLKTSSYQ-VTTVDSGSKALEFLGLHEDDGQSSHSVYPNMH 73
+ L VDD+ R++ LLK + V + G AL N
Sbjct: 1 ELKFLVVDDNSTMRRITRNLLKELGFNNVEEAEDGVDAL------------------NKL 42
Query: 74 QEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEF 133
Q G VI+D+ MP M G +LLK I+ ++ +PV+++++E I + GA +
Sbjct: 43 QAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGY 102
Query: 134 FLKPVRLSDL 143
+KP + L
Sbjct: 103 VVKPFTAATL 112
>pdb|3OO0|A Chain A, Structure Of Apo Chey A113p
pdb|3OO0|B Chain B, Structure Of Apo Chey A113p
pdb|3OO1|A Chain A, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
pdb|3OO1|B Chain B, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
Length = 129
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 19/126 (15%)
Query: 13 ESQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTTVDSGSKALEFLGLHEDDGQSSHSVYPN 71
+ + L VDD R+++ LLK + V + G AL N
Sbjct: 3 DKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL------------------N 44
Query: 72 MHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAE 131
Q G VI+D+ MP M G +LLK I+ ++ +PV+++++E I + GA
Sbjct: 45 KLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGAS 104
Query: 132 EFFLKP 137
+ +KP
Sbjct: 105 GYVVKP 110
>pdb|1D4Z|A Chain A, Crystal Structure Of Chey-95iv, A Hyperactive Chey Mutant
Length = 128
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 58/132 (43%), Gaps = 19/132 (14%)
Query: 13 ESQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTTVDSGSKALEFLGLHEDDGQSSHSVYPN 71
+ + L VDD R+++ LLK + V + G AL N
Sbjct: 2 DKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL------------------N 43
Query: 72 MHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAE 131
Q G VI+D+ MP M G +LLK I+ ++ +PV+++++E + + GA
Sbjct: 44 KLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENVIAAAQAGAS 103
Query: 132 EFFLKPVRLSDL 143
+ +KP + L
Sbjct: 104 GYVVKPFTAATL 115
>pdb|3FGZ|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
pdb|3FGZ|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 19/132 (14%)
Query: 13 ESQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTTVDSGSKALEFLGLHEDDGQSSHSVYPN 71
+ + L VDD R+++ LLK + V + G AL N
Sbjct: 2 DKELKFLVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDAL------------------N 43
Query: 72 MHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAE 131
Q G VI+D+ MP M G +LLK I+ ++ +PV+++++ I + GA
Sbjct: 44 KLQAGGYGFVISDWMMPNMDGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGAS 103
Query: 132 EFFLKPVRLSDL 143
+ +KP + L
Sbjct: 104 GYVVKPFTAATL 115
>pdb|3OLY|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
pdb|3OLY|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
Length = 129
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 19/132 (14%)
Query: 13 ESQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTTVDSGSKALEFLGLHEDDGQSSHSVYPN 71
+ + L VDD R+++ LLK + V + G AL N
Sbjct: 3 DKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL------------------N 44
Query: 72 MHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAE 131
Q G VI+D+ MP M G +LLK I+ ++ +PV++++ E I + GA
Sbjct: 45 KLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTMEAKKENIIAAAQAGAS 104
Query: 132 EFFLKPVRLSDL 143
+ +KP + L
Sbjct: 105 GYVVKPFTAATL 116
>pdb|1K66|A Chain A, Crystal Structure Of The Cyanobacterial Phytochrome
Response Regulator, Rcpb
pdb|1K66|B Chain B, Crystal Structure Of The Cyanobacterial Phytochrome
Response Regulator, Rcpb
Length = 149
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 67/140 (47%), Gaps = 16/140 (11%)
Query: 18 VLAVDDSIIDRKLIERLLKTSS-----YQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNM 72
+L V+DS D +RLL+ Y+ T G +AL+FL Q+ P++
Sbjct: 9 LLVVEDSDEDFSTFQRLLQREGVVNPIYRCIT---GDQALDFLY------QTGSYCNPDI 59
Query: 73 HQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEE 132
V ++ D +PG G ++L++IK+ L+ IPVVIM++ + P I C
Sbjct: 60 APRPAV--ILLDLNLPGTDGREVLQEIKQDEVLKKIPVVIMTTSSNPKDIEICYSYSISS 117
Query: 133 FFLKPVRLSDLNKLKPHLMK 152
+ +KP+ + L + +K
Sbjct: 118 YIVKPLEIDRLTETVQTFIK 137
>pdb|3OLV|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
pdb|3OLV|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
Length = 129
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 19/132 (14%)
Query: 13 ESQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTTVDSGSKALEFLGLHEDDGQSSHSVYPN 71
+ + L VDD R+++ LLK + V + G AL N
Sbjct: 3 DKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL------------------N 44
Query: 72 MHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAE 131
Q G VI+D+ MP M G +LLK I+ ++ +PV++++ E I + GA
Sbjct: 45 KLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTVEAKKENIIAAAQAGAS 104
Query: 132 EFFLKPVRLSDL 143
+ +KP + L
Sbjct: 105 GYVVKPFTAATL 116
>pdb|6CHY|A Chain A, Structure Of Chemotaxis Protein Chey
pdb|6CHY|B Chain B, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 19/132 (14%)
Query: 13 ESQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTTVDSGSKALEFLGLHEDDGQSSHSVYPN 71
+ + L VDD R+++ LLK + V + G AL N
Sbjct: 2 DKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL------------------N 43
Query: 72 MHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAE 131
Q G VI+D+ MP M G +LLK I+ ++ +PV+++ +E I + GA
Sbjct: 44 KLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGAS 103
Query: 132 EFFLKPVRLSDL 143
+ +KP + L
Sbjct: 104 GWVVKPFTAATL 115
>pdb|3RVJ|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVJ|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVK|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89q
Length = 132
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 58/132 (43%), Gaps = 19/132 (14%)
Query: 13 ESQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTTVDSGSKALEFLGLHEDDGQSSHSVYPN 71
+ + L VDD R+++ LLK + V + G AL N
Sbjct: 6 DKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL------------------N 47
Query: 72 MHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAE 131
Q G VI+D+ MP M G +LLK I+ ++ +PV++++++ I + GA
Sbjct: 48 KLQAGGYGFVISDWDMPNMDGLELLKTIRADGAMSALPVLMVTAQAKKENIIAAAQAGAS 107
Query: 132 EFFLKPVRLSDL 143
+ +KP + L
Sbjct: 108 GYVVKPFTAATL 119
>pdb|3FFT|A Chain A, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
pdb|3FFT|B Chain B, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 19/132 (14%)
Query: 13 ESQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTTVDSGSKALEFLGLHEDDGQSSHSVYPN 71
+ + L VDD R+++ LLK + V + G AL N
Sbjct: 2 DKELKFLVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDAL------------------N 43
Query: 72 MHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAE 131
Q G VI+D+ MP M G +LLK I+ ++ +PV+++++ I + GA
Sbjct: 44 KLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGAS 103
Query: 132 EFFLKPVRLSDL 143
+ +KP + L
Sbjct: 104 GYVVKPFTAATL 115
>pdb|1VLZ|A Chain A, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
pdb|1VLZ|B Chain B, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
Length = 128
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 19/132 (14%)
Query: 13 ESQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTTVDSGSKALEFLGLHEDDGQSSHSVYPN 71
+ + L VDD R+++ LLK + V + G AL N
Sbjct: 2 DKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL------------------N 43
Query: 72 MHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAE 131
Q G VI+D+ MP M G +LLK I+ ++ +PV+++ +E I + GA
Sbjct: 44 KLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGAS 103
Query: 132 EFFLKPVRLSDL 143
+ +KP + L
Sbjct: 104 GYVVKPFTAATL 115
>pdb|3FFX|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
pdb|3FFX|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
Length = 128
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 19/132 (14%)
Query: 13 ESQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTTVDSGSKALEFLGLHEDDGQSSHSVYPN 71
+ + L VDD R+++ LLK + V + G AL N
Sbjct: 2 DKELKFLVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDAL------------------N 43
Query: 72 MHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAE 131
Q G VI+D+ MP M G +LLK I+ ++ +PV+++++ I + GA
Sbjct: 44 KLQAGGYGFVISDWRMPNMDGLELLKTIRADGAMSALPVLMVTAHAKKENIIAAAQAGAS 103
Query: 132 EFFLKPVRLSDL 143
+ +KP + L
Sbjct: 104 GYVVKPFTAATL 115
>pdb|3RVP|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVP|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVQ|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89k
Length = 132
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 58/132 (43%), Gaps = 19/132 (14%)
Query: 13 ESQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTTVDSGSKALEFLGLHEDDGQSSHSVYPN 71
+ + L VDD R+++ LLK + V + G AL N
Sbjct: 6 DKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL------------------N 47
Query: 72 MHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAE 131
Q G VI+D+ MP M G +LLK I+ ++ +PV++++++ I + GA
Sbjct: 48 KLQAGGYGFVISDWDMPNMDGLELLKTIRADGAMSALPVLMVTAKAKKENIIAAAQAGAS 107
Query: 132 EFFLKPVRLSDL 143
+ +KP + L
Sbjct: 108 GYVVKPFTAATL 119
>pdb|3F7N|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
pdb|3F7N|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
Length = 128
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 19/132 (14%)
Query: 13 ESQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTTVDSGSKALEFLGLHEDDGQSSHSVYPN 71
+ + L VDD R+++ LLK + V + G AL N
Sbjct: 2 DKELKFLVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDAL------------------N 43
Query: 72 MHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAE 131
Q G VI+D+ MP M G +LLK I+ ++ +PV+++++ I + GA
Sbjct: 44 KLQAGGYGFVISDWMMPNMDGLELLKTIRADGAMSALPVLMVTALAKKENIIAAAQAGAS 103
Query: 132 EFFLKPVRLSDL 143
+ +KP + L
Sbjct: 104 GYVVKPFTAATL 115
>pdb|3FFW|A Chain A, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
pdb|3FFW|B Chain B, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
Length = 128
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 19/132 (14%)
Query: 13 ESQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTTVDSGSKALEFLGLHEDDGQSSHSVYPN 71
+ + L VDD R+++ LLK + V + G AL N
Sbjct: 2 DKELKFLVVDDQSTMRRIVRNLLKELGFNNVEEAEDGVDAL------------------N 43
Query: 72 MHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAE 131
Q G VI+D+ MP M G +LLK I+ ++ +PV+++++ I + GA
Sbjct: 44 KLQAGGYGFVISDWKMPNMDGLELLKTIRADGAMSALPVLMVTAYAKKENIIAAAQAGAS 103
Query: 132 EFFLKPVRLSDL 143
+ +KP + L
Sbjct: 104 GYVVKPFTAATL 115
>pdb|3RVL|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVL|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVM|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVR|A Chain A, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVR|B Chain B, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVS|A Chain A, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
pdb|3RVS|B Chain B, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
Length = 132
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 19/132 (14%)
Query: 13 ESQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTTVDSGSKALEFLGLHEDDGQSSHSVYPN 71
+ + L VDD R+++ LLK + V + G AL N
Sbjct: 6 DKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL------------------N 47
Query: 72 MHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAE 131
Q G VI+D+ MP M G +LLK I+ ++ +PV+++++ I + GA
Sbjct: 48 KLQAGGYGFVISDWDMPNMDGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGAS 107
Query: 132 EFFLKPVRLSDL 143
+ +KP + L
Sbjct: 108 GYVVKPFTAATL 119
>pdb|1EHC|A Chain A, Structure Of Signal Transduction Protein Chey
Length = 128
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 19/132 (14%)
Query: 13 ESQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTTVDSGSKALEFLGLHEDDGQSSHSVYPN 71
+ + L VD R+++ LLK + V + G AL N
Sbjct: 2 DKELKFLVVDKFSTMRRIVRNLLKELGFNNVEEAEDGVDAL------------------N 43
Query: 72 MHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAE 131
Q G VI+D+ MP M G +LLK I+ ++ +PV+++++E I + GA
Sbjct: 44 KLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGAS 103
Query: 132 EFFLKPVRLSDL 143
+ +KP + L
Sbjct: 104 GYVVKPFTAATL 115
>pdb|1ZDM|A Chain A, Crystal Structure Of Activated Chey Bound To Xe
pdb|1ZDM|B Chain B, Crystal Structure Of Activated Chey Bound To Xe
Length = 129
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 19/132 (14%)
Query: 13 ESQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTTVDSGSKALEFLGLHEDDGQSSHSVYPN 71
+ + L VDD R+++ LLK + V + G AL N
Sbjct: 3 DKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL------------------N 44
Query: 72 MHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAE 131
Q G VI+ + MP M G +LLK I+ ++ +PV+++++E I + GA
Sbjct: 45 KLQAGGYGFVISXWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGAS 104
Query: 132 EFFLKPVRLSDL 143
+ +KP + L
Sbjct: 105 GYVVKPFTAATL 116
>pdb|1C4W|A Chain A, 1.9 A Structure Of A-Thiophosphonate Modified Chey D57c
Length = 128
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 19/132 (14%)
Query: 13 ESQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTTVDSGSKALEFLGLHEDDGQSSHSVYPN 71
+ + L VDD R+++ LLK + V + G AL N
Sbjct: 2 DKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL------------------N 43
Query: 72 MHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAE 131
Q G VI+ + MP M G +LLK I+ ++ +PV+++++E I + GA
Sbjct: 44 KLQAGGYGFVISXWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGAS 103
Query: 132 EFFLKPVRLSDL 143
+ +KP + L
Sbjct: 104 GYVVKPFTAATL 115
>pdb|1JLK|A Chain A, Crystal Structure Of The Mn(2+)-Bound Form Of Response
Regulator Rcp1
pdb|1JLK|B Chain B, Crystal Structure Of The Mn(2+)-Bound Form Of Response
Regulator Rcp1
Length = 147
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 68/131 (51%), Gaps = 13/131 (9%)
Query: 18 VLAVDDSIIDRKLIERLLKTSS--YQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQE 75
+L V+DS D +L++ +LKTS+ +++ + G A+ FL + G+ +S PN
Sbjct: 11 ILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFL---QQQGEYENSPRPN---- 63
Query: 76 VGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFL 135
L++ D +P G ++L +IK++ L+ IPVV++++ + + E +
Sbjct: 64 ----LILLDLNLPKKDGREVLAEIKQNPDLKRIPVVVLTTSHNEDDVIASYELHVNCYLT 119
Query: 136 KPVRLSDLNKL 146
K L DL K+
Sbjct: 120 KSRNLKDLFKM 130
>pdb|1E6M|A Chain A, Two-Component Signal Transduction System D57a Mutant Of
Chey
Length = 128
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 19/132 (14%)
Query: 13 ESQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTTVDSGSKALEFLGLHEDDGQSSHSVYPN 71
+ + L VDD R+++ LLK + V + G AL N
Sbjct: 2 DKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL------------------N 43
Query: 72 MHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAE 131
Q G VI+ + MP M G +LLK I+ ++ +PV+++++E I + GA
Sbjct: 44 KLQAGGYGFVISAWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGAS 103
Query: 132 EFFLKPVRLSDL 143
+ +KP + L
Sbjct: 104 GYVVKPFTAATL 115
>pdb|1E6L|A Chain A, Two-Component Signal Transduction System D13a Mutant Of
Chey
Length = 127
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 19/132 (14%)
Query: 13 ESQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTTVDSGSKALEFLGLHEDDGQSSHSVYPN 71
+ + L VD R+++ LLK + V + G AL N
Sbjct: 1 DKELKFLVVDAFSTMRRIVRNLLKELGFNNVEEAEDGVDAL------------------N 42
Query: 72 MHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAE 131
Q G VI+D+ MP M G +LLK I+ ++ +PV+++++E I + GA
Sbjct: 43 KLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGAS 102
Query: 132 EFFLKPVRLSDL 143
+ +KP + L
Sbjct: 103 GYVVKPFTAATL 114
>pdb|1E6K|A Chain A, Two-Component Signal Transduction System D12a Mutant Of
Chey
Length = 130
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 19/132 (14%)
Query: 13 ESQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTTVDSGSKALEFLGLHEDDGQSSHSVYPN 71
+ + L V D R+++ LLK + V + G AL N
Sbjct: 4 DKELKFLVVADFSTMRRIVRNLLKELGFNNVEEAEDGVDAL------------------N 45
Query: 72 MHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAE 131
Q G VI+D+ MP M G +LLK I+ ++ +PV+++++E I + GA
Sbjct: 46 KLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGAS 105
Query: 132 EFFLKPVRLSDL 143
+ +KP + L
Sbjct: 106 GYVVKPFTAATL 117
>pdb|3RVN|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVN|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVO|A Chain A, Structure Of Chey-Mn2+ Complex With Substitutions At 59
And 89: N59d E89y
Length = 132
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 19/132 (14%)
Query: 13 ESQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTTVDSGSKALEFLGLHEDDGQSSHSVYPN 71
+ + L VDD R+++ LLK + V + G AL N
Sbjct: 6 DKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL------------------N 47
Query: 72 MHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAE 131
Q G VI+D+ MP M G +LLK I+ ++ +PV+++++ I + GA
Sbjct: 48 KLQAGGYGFVISDWDMPNMDGLELLKTIRADGAMSALPVLMVTAYAKKENIIAAAQAGAS 107
Query: 132 EFFLKPVRLSDL 143
+ +KP + L
Sbjct: 108 GYVVKPFTAATL 119
>pdb|1HEY|A Chain A, Investigating The Structural Determinants Of The P21-Like
Triphosphate And Mg2+ Binding Site
Length = 128
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%)
Query: 71 NMHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGA 130
N Q G VI+D+ MP M G +LLK I+ ++ +PV+++++E I + GA
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGA 102
Query: 131 EEFFLKPVRLSDL 143
+ +KP + L
Sbjct: 103 SGYVVKPFTAATL 115
>pdb|3EOD|A Chain A, Crystal Structure Of N-Terminal Domain Of E. Coli Rssb
Length = 130
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 57/131 (43%), Gaps = 22/131 (16%)
Query: 17 HVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEV 76
+L V+D + R L++ + G ALE LG D
Sbjct: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPD--------------- 53
Query: 77 GVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLK 136
L+I D MP M G LL+ I+ PV+++S+ + I++ L G E+ LK
Sbjct: 54 ---LMICDIAMPRMNGLKLLEHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLK 108
Query: 137 PVRLSDLNKLK 147
PV+ DLN+L+
Sbjct: 109 PVK--DLNRLR 117
>pdb|1ZES|A Chain A, Bef3- Activated Phob Receiver Domain
pdb|1ZES|B Chain B, Bef3- Activated Phob Receiver Domain
pdb|1ZES|C Chain C, Bef3- Activated Phob Receiver Domain
Length = 125
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 18/121 (14%)
Query: 17 HVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEV 76
+L V+D R+++ +L+ + +Q + A+ N E
Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAV------------------NQLNEP 45
Query: 77 GVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLK 136
+L++ D+ +PG +G +K +K S RDIPVV++++ R LE GA+++ K
Sbjct: 46 WPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITK 105
Query: 137 P 137
P
Sbjct: 106 P 106
>pdb|1B00|A Chain A, Phob Receiver Domain From Escherichia Coli
pdb|1B00|B Chain B, Phob Receiver Domain From Escherichia Coli
pdb|2IYN|A Chain A, The Co-Factor-Induced Pre-Active Conformation In Phob
pdb|2IYN|B Chain B, The Co-Factor-Induced Pre-Active Conformation In Phob
pdb|2IYN|C Chain C, The Co-Factor-Induced Pre-Active Conformation In Phob
Length = 127
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 18/121 (14%)
Query: 17 HVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEV 76
+L V+D R+++ +L+ + +Q + A+ N E
Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAV------------------NQLNEP 45
Query: 77 GVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLK 136
+L++ D+ +PG +G +K +K S RDIPVV++++ R LE GA+++ K
Sbjct: 46 WPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITK 105
Query: 137 P 137
P
Sbjct: 106 P 106
>pdb|2ID7|A Chain A, 1.75 A Structure Of T87i Phosphono-Chey
Length = 128
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 56/132 (42%), Gaps = 19/132 (14%)
Query: 13 ESQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTTVDSGSKALEFLGLHEDDGQSSHSVYPN 71
+ + L VDD R+++ LLK + V + G AL N
Sbjct: 2 DKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL------------------N 43
Query: 72 MHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAE 131
Q G VI+ + MP M G +LLK I+ ++ +PV+++ +E I + GA
Sbjct: 44 KLQAGGYGFVISXWNMPNMDGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGAS 103
Query: 132 EFFLKPVRLSDL 143
+ +KP + L
Sbjct: 104 GYVVKPFTAATL 115
>pdb|3T6K|A Chain A, Crystal Structure Of A Hypothetical Response Regulator
(Caur_3799) From Chloroflexus Aurantiacus J-10-Fl At
1.86 A Resolution
pdb|3T6K|B Chain B, Crystal Structure Of A Hypothetical Response Regulator
(Caur_3799) From Chloroflexus Aurantiacus J-10-Fl At
1.86 A Resolution
Length = 136
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 68/140 (48%), Gaps = 19/140 (13%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVG 77
+L VDD + +E +L+ + Y+V SG +AL+ +Y N+
Sbjct: 7 LLIVDDDDTVAEXLELVLRGAGYEVRRAASGEEALQ-------------QIYKNLP---- 49
Query: 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137
+ +I D +PG+ GY L K++++ + +P++ ++++ S E GA ++ KP
Sbjct: 50 -DALICDVLLPGIDGYTLCKRVRQHPLTKTLPILXLTAQGDISAKIAGFEAGANDYLAKP 108
Query: 138 VRLSDL-NKLKPHLMKTKIK 156
+L ++K L +T I+
Sbjct: 109 FEPQELVYRVKNILARTTIE 128
>pdb|2ID9|A Chain A, 1.85 A Structure Of T87iY106W PHOSPHONO-Chey
pdb|2IDM|A Chain A, 2.00 A Structure Of T87iY106W PHOSPHONO-Chey
Length = 128
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 56/132 (42%), Gaps = 19/132 (14%)
Query: 13 ESQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTTVDSGSKALEFLGLHEDDGQSSHSVYPN 71
+ + L VDD R+++ LLK + V + G AL N
Sbjct: 2 DKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL------------------N 43
Query: 72 MHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAE 131
Q G VI+ + MP M G +LLK I+ ++ +PV+++ +E I + GA
Sbjct: 44 KLQAGGYGFVISXWNMPNMDGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGAS 103
Query: 132 EFFLKPVRLSDL 143
+ +KP + L
Sbjct: 104 GWVVKPFTAATL 115
>pdb|1I3C|A Chain A, Response Regulator For Cyanobacterial Phytochrome, Rcp1
pdb|1I3C|B Chain B, Response Regulator For Cyanobacterial Phytochrome, Rcp1
Length = 149
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 66/130 (50%), Gaps = 13/130 (10%)
Query: 18 VLAVDDSIIDRKLIERLLKTSS--YQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQE 75
+L V+DS D +L++ +LKTS+ +++ + G A FL + G+ +S PN
Sbjct: 11 ILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAXAFL---QQQGEYENSPRPN---- 63
Query: 76 VGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFL 135
L++ D +P G ++L +IK++ L+ IPVV++++ + + E +
Sbjct: 64 ----LILLDLNLPKKDGREVLAEIKQNPDLKRIPVVVLTTSHNEDDVIASYELHVNCYLT 119
Query: 136 KPVRLSDLNK 145
K L DL K
Sbjct: 120 KSRNLKDLFK 129
>pdb|2JB9|A Chain A, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D10a And D53e.
pdb|2JB9|B Chain B, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D10a And D53e
Length = 127
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%)
Query: 71 NMHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGA 130
N E +L++ ++ +PG +G +K +K S RDIPVV++++ R LE GA
Sbjct: 40 NQLNEPWPDLILLEWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGA 99
Query: 131 EEFFLKP 137
+++ KP
Sbjct: 100 DDYITKP 106
>pdb|1KRW|A Chain A, Solution Structure And Backbone Dynamics Of
Beryllofluoride- Activated Ntrc Receiver Domain
Length = 124
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 20/120 (16%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVG 77
V VDD R ++ER L + TT ++G++ L L D
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTPD---------------- 49
Query: 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137
++++D MPGM G LLK+IK+ + +PV+IM++ + ++GA ++ KP
Sbjct: 50 --VLLSDIRMPGMDGLALLKQIKQRHPM--LPVIIMTAHSDLDAAVSAYQQGAFDYLPKP 105
>pdb|1DC7|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 20/120 (16%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVG 77
V VDD R ++ER L + TT ++G++ L L D
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTPD---------------- 49
Query: 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137
++++D MPGM G LLK+IK+ + +PV+IM++ + ++GA ++ KP
Sbjct: 50 --VLLSDIRMPGMDGLALLKQIKQRHPM--LPVIIMTAHSDLDAAVSAYQQGAFDYLPKP 105
>pdb|1J56|A Chain A, Minimized Average Structure Of Beryllofluoride-Activated
Ntrc Receiver Domain: Model Structure Incorporating
Active Site Contacts
pdb|1KRX|A Chain A, Solution Structure Of Beryllofluoride-Activated Ntrc
Receiver Domain: Model Structures Incorporating Active
Site Contacts
pdb|1NTR|A Chain A, Solution Structure Of The N-Terminal Receiver Domain Of
Ntrc
Length = 124
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 20/120 (16%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVG 77
V VDD R ++ER L + TT ++G++ L L D
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTPD---------------- 49
Query: 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137
++++D MPGM G LLK+IK+ + +PV+IM++ + ++GA ++ KP
Sbjct: 50 --VLLSDIRMPGMDGLALLKQIKQRHPM--LPVIIMTAHSDLDAAVSAYQQGAFDYLPKP 105
>pdb|1YIO|A Chain A, Crystallographic Structure Of Response Regulator Styr From
Pseudomonas Fluorescens
pdb|1ZN2|A Chain A, Low Resolution Structure Of Response Regulator Styr
Length = 208
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 20/120 (16%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVG 77
V VDD + R+ + LL+++ ++V T D S LE H P H
Sbjct: 7 VFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLE----HR---------RPEQH---- 49
Query: 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137
++ D MPGM+G +L +++ S IP+V +++ R ++ GA EF KP
Sbjct: 50 -GCLVLDMRMPGMSGIELQEQLTAISD--GIPIVFITAHGDIPMTVRAMKAGAIEFLPKP 106
>pdb|3CNB|A Chain A, Crystal Structure Of Signal Receiver Domain Of Dna Binding
Response Regulator Protein (Merr) From Colwellia
Psychrerythraea 34h
pdb|3CNB|B Chain B, Crystal Structure Of Signal Receiver Domain Of Dna Binding
Response Regulator Protein (Merr) From Colwellia
Psychrerythraea 34h
pdb|3CNB|C Chain C, Crystal Structure Of Signal Receiver Domain Of Dna Binding
Response Regulator Protein (Merr) From Colwellia
Psychrerythraea 34h
Length = 143
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 8/95 (8%)
Query: 60 DDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVP 119
D G H+V P+ +V+ D M GM G+ + +IK + + +I V+ M+
Sbjct: 45 DAGDLLHTVKPD--------VVMLDLMMVGMDGFSICHRIKSTPATANIIVIAMTGALTD 96
Query: 120 SRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMKTK 154
+SR + GAE F KP+ + L K L++ K
Sbjct: 97 DNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQK 131
>pdb|3BRE|A Chain A, Crystal Structure Of P.Aeruginosa Pa3702
pdb|3BRE|B Chain B, Crystal Structure Of P.Aeruginosa Pa3702
Length = 358
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 34/58 (58%)
Query: 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLK 136
+++ D MPG+ G LL + + + RDIP++++S++ P+ S GA ++ +K
Sbjct: 65 TVILQDLVMPGVDGLTLLAAYRGNPATRDIPIIVLSTKEEPTVKSAAFAAGANDYLVK 122
>pdb|3NHZ|A Chain A, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|B Chain B, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|C Chain C, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|D Chain D, Structure Of N-Terminal Domain Of Mtra
Length = 125
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 59/123 (47%), Gaps = 21/123 (17%)
Query: 17 HVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEV 76
+L VDD +++ +L+ + + G++AL + +E+
Sbjct: 7 RILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAV------------------REL 48
Query: 77 GVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLK 136
+LV+ D +PGM G D+ + ++ S +P+V+++++ + LE GA+++ +K
Sbjct: 49 RPDLVLLDLMLPGMNGIDVCRVLRADSG---VPIVMLTAKTDTVDVVLGLESGADDYIMK 105
Query: 137 PVR 139
P +
Sbjct: 106 PFK 108
>pdb|1U8T|A Chain A, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|B Chain B, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|C Chain C, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|D Chain D, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
Length = 128
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 53/132 (40%), Gaps = 19/132 (14%)
Query: 13 ESQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTTVDSGSKALEFLGLHEDDGQSSHSVYPN 71
+ + L VD R+++ LLK + V + G AL N
Sbjct: 2 DKELKFLVVDKFSTXRRIVRNLLKELGFNNVEEAEDGVDAL------------------N 43
Query: 72 MHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAE 131
Q G VI+D+ P G +LLK I+ + +PV+ +++E I + GA
Sbjct: 44 KLQAGGYGFVISDWNXPNXDGLELLKTIRADGAXSALPVLXVTAEAKKENIIAAAQAGAS 103
Query: 132 EFFLKPVRLSDL 143
+ +KP + L
Sbjct: 104 GWVVKPFTAATL 115
>pdb|3CFY|A Chain A, Crystal Structure Of Signal Receiver Domain Of Putative
Luxo Repressor Protein From Vibrio Parahaemolyticus
Length = 137
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 68/146 (46%), Gaps = 25/146 (17%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVG 77
VL V+DS L ++ +K Y + V++G A++F+ +
Sbjct: 7 VLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFI------------------ERSK 48
Query: 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIP--VVIMSSENVPSRISRCLEEGAEEFFL 135
L+I D +P M+G D+L I ++ DIP V+I ++ +++GAE+F
Sbjct: 49 PQLIILDLKLPDMSGEDVLDWINQN----DIPTSVIIATAHGSVDLAVNLIQKGAEDFLE 104
Query: 136 KPVRLSDL-NKLKPHLMKTKIKDQIK 160
KP+ L + HL + K++D ++
Sbjct: 105 KPINADRLKTSVALHLKRAKLEDLVE 130
>pdb|2JBA|B Chain B, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D53a And Y102c
Length = 127
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 18/121 (14%)
Query: 17 HVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEV 76
+L V+D R+++ +L+ + +Q + A+ N E
Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAV------------------NQLNEP 45
Query: 77 GVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLK 136
+L++ + +PG +G +K +K S RDIPVV++++ R LE GA++ K
Sbjct: 46 WPDLILLAWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDCITK 105
Query: 137 P 137
P
Sbjct: 106 P 106
>pdb|3EQ2|A Chain A, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3EQ2|B Chain B, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 63/130 (48%), Gaps = 22/130 (16%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVG 77
+L +DD + R+ + L+ S+++V +G + L+ + D
Sbjct: 8 LLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFESEQPD---------------- 51
Query: 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137
LVI D P + G +L+++I++++S + P++++S V S L GA ++ +KP
Sbjct: 52 --LVICDLRXPQIDGLELIRRIRQTAS--ETPIIVLSGAGVXSDAVEALRLGAADYLIKP 107
Query: 138 VRLSDLNKLK 147
L DL L+
Sbjct: 108 --LEDLAVLE 115
>pdb|1DC8|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 20/120 (16%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVG 77
V VDD R ++ER L + TT ++G++ L L D
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTPD---------------- 49
Query: 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137
++++ MPGM G LLK+IK+ + +PV+IM++ + ++GA ++ KP
Sbjct: 50 --VLLSXIRMPGMDGLALLKQIKQRHPM--LPVIIMTAHSDLDAAVSAYQQGAFDYLPKP 105
>pdb|3F7A|A Chain A, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3F7A|B Chain B, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 63/130 (48%), Gaps = 22/130 (16%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVG 77
+L +DD + R+ + L+ S+++V +G + L+ + D
Sbjct: 8 LLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFESEQPD---------------- 51
Query: 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137
LVI D P + G +L+++I++++S + P++++S V S L GA ++ +KP
Sbjct: 52 --LVICDLRXPQIDGLELIRRIRQTAS--ETPIIVLSGAGVMSDAVEALRLGAADYLIKP 107
Query: 138 VRLSDLNKLK 147
L DL L+
Sbjct: 108 --LEDLAVLE 115
>pdb|1M5T|A Chain A, Crystal Structure Of The Response Regulator Divk
pdb|1M5U|A Chain A, Crystal Structure Of The Response Regulator Divk.
Structure At Ph 8.0 In The Apo-Form
pdb|1MAV|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 6.0
In Complex With Mn2+
pdb|1MB0|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.0
In Complex With Mn2+
pdb|1MB3|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.5
In Complex With Mg2+
Length = 124
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 18/121 (14%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVG 77
VL V+D+ ++ KL LL+ Y+ G AL ++ +E
Sbjct: 4 VLIVEDNELNMKLFHDLLEAQGYETLQTREGLSAL------------------SIARENK 45
Query: 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137
+L++ D +P ++G ++ K +KE L IPVV +++ + R E G E + KP
Sbjct: 46 PDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVVAVTAFAMKGDEERIREGGCEAYISKP 105
Query: 138 V 138
+
Sbjct: 106 I 106
>pdb|2OQR|A Chain A, The Structure Of The Response Regulator Regx3 From
Mycobacterium Tuberculosis
Length = 230
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 27/107 (25%)
Query: 34 LLKTSSYQVTTVDSGSKAL-EFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTG 92
LL+ ++ T V G AL EF G ++V+ D +PGM+G
Sbjct: 23 LLRKEGFEATVVTDGPAALAEF-------------------DRAGADIVLLDLMLPGMSG 63
Query: 93 YDLLKKIKESSSLRDIPVVIMSSENVPSRISRC--LEEGAEEFFLKP 137
D+ K+++ SS +PV+++++ + S I + LE GA+++ KP
Sbjct: 64 TDVCKQLRARSS---VPVIMVTARD--SEIDKVVGLELGADDYVTKP 105
>pdb|1L5Y|A Chain A, Crystal Structure Of Mg2+ / Bef3-bound Receiver Domain Of
Sinorhizobium Meliloti Dctd
pdb|1L5Y|B Chain B, Crystal Structure Of Mg2+ / Bef3-bound Receiver Domain Of
Sinorhizobium Meliloti Dctd
pdb|1L5Z|A Chain A, Crystal Structure Of The E121k Substitution Of The
Receiver Domain Of Sinorhizobium Meliloti Dctd
Length = 155
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 60/121 (49%), Gaps = 22/121 (18%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVG 77
V +DD RK +++ L+ + + V++ S ++AL GL D
Sbjct: 6 VFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALA--GLSAD----------------F 47
Query: 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSE-NVPSRISRCLEEGAEEFFLK 136
+VI+D MPGM G L +KI D+P+++++ ++P + + +++GA +F K
Sbjct: 48 AGIVISDIRMPGMDGLALFRKILALDP--DLPMILVTGHGDIPMAV-QAIQDGAYDFIAK 104
Query: 137 P 137
P
Sbjct: 105 P 105
>pdb|3CG4|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
Protein (Chey- Like) From Methanospirillum Hungatei Jf-1
Length = 142
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 58/131 (44%), Gaps = 18/131 (13%)
Query: 13 ESQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNM 72
E + V VDD R ++ +L + + + + DSG + ++ L + S
Sbjct: 5 EHKGDVXIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLL-------KKGFS----- 52
Query: 73 HQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEE 132
+V+ D PG G+D ++ I ++S + I +V ++++N P L+E +
Sbjct: 53 ------GVVLLDIXXPGXDGWDTIRAILDNSLEQGIAIVXLTAKNAPDAKXIGLQEYVVD 106
Query: 133 FFLKPVRLSDL 143
+ KP DL
Sbjct: 107 YITKPFDNEDL 117
>pdb|1QKK|A Chain A, Crystal Structure Of The Receiver Domain And Linker Region
Of Dctd From Sinorhizobium Meliloti
Length = 155
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 60/121 (49%), Gaps = 22/121 (18%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVG 77
V +DD RK +++ L+ + + V++ S ++AL GL D
Sbjct: 6 VFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALA--GLSAD----------------F 47
Query: 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSE-NVPSRISRCLEEGAEEFFLK 136
+VI+D MPGM G L +KI D+P+++++ ++P + + +++GA +F K
Sbjct: 48 AGIVISDIRMPGMDGLALFRKILALDP--DLPMILVTGHGDIPMAV-QAIQDGAYDFIAK 104
Query: 137 P 137
P
Sbjct: 105 P 105
>pdb|2JBA|A Chain A, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D53a And Y102c
Length = 127
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 18/121 (14%)
Query: 17 HVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEV 76
+L V+D R+++ +L+ + +Q + A+ N E
Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAV------------------NQLNEP 45
Query: 77 GVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLK 136
+L++ + +PG +G +K ++ S RDIPVV++++ R LE GA++ K
Sbjct: 46 WPDLILLAWMLPGGSGIQFIKHLRRESMTRDIPVVMLTARGEEEDRVRGLETGADDCITK 105
Query: 137 P 137
P
Sbjct: 106 P 106
>pdb|3I5A|A Chain A, Crystal Structure Of Full-Length Wpsr From Pseudomonas
Syringae
Length = 334
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 34/57 (59%)
Query: 80 LVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLK 136
+++ D MPG+ G L+++ + + RDIP++++S++ P S GA ++ +K
Sbjct: 64 VILQDLVMPGLDGLTLVREYRSNPLTRDIPIIVLSTKEDPLIKSAAFAAGANDYLVK 120
>pdb|3MM4|A Chain A, Crystal Structure Of The Receiver Domain Of The Histidine
Kinase Cki1 From Arabidopsis Thaliana
pdb|3MMN|A Chain A, Crystal Structure Of The Receiver Domain Of The Histidine
Kinase Cki1 From Arabidopsis Thaliana Complexed With
Mg2+
Length = 206
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 62/127 (48%), Gaps = 15/127 (11%)
Query: 17 HVLAVDDSIIDRKLIE-RLLKTSSYQVTTVDSGSKALEFL--GLHEDDGQSSHSVYPNMH 73
VL VDD+ I RK+ +L K +V DSG +AL + GL + + Q S P
Sbjct: 63 RVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSVDKLP--- 119
Query: 74 QEVGVNLVITDYCMPGMTGYDL---LKKIKESSSLRDIPVVIMSSENVPSRISR-CLEEG 129
+ + D MP M GY+ ++K+++S +R P++ +S + S +R ++ G
Sbjct: 120 ----FDYIFMDCQMPEMDGYEATREIRKVEKSYGVR-TPIIAVSGHDPGSEEARETIQAG 174
Query: 130 AEEFFLK 136
+ F K
Sbjct: 175 MDAFLDK 181
>pdb|1S8N|A Chain A, Crystal Structure Of Rv1626 From Mycobacterium
Tuberculosis
pdb|1SD5|A Chain A, Crystal Structure Of Rv1626
Length = 205
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 22/128 (17%)
Query: 17 HVLAVDDSIIDRKLIERLLKTSSYQVT-TVDSGSKALEFLGLHEDDGQSSHSVYPNMHQE 75
VL +D + R + +L+ Y++ G +A+E LH+ D
Sbjct: 15 RVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELHKPD-------------- 60
Query: 76 VGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFL 135
LVI D MP G D +I +S R P+V++++ + + R + GA + +
Sbjct: 61 ----LVIMDVKMPRRDGIDAASEI---ASKRIAPIVVLTAFSQRDLVERARDAGAMAYLV 113
Query: 136 KPVRLSDL 143
KP +SDL
Sbjct: 114 KPFSISDL 121
>pdb|3JTE|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
Protein From Clostridium Thermocellum
Length = 143
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 62/127 (48%), Gaps = 18/127 (14%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVG 77
+L +DD + I+ LL+ +V T S ++ L ++ +S+
Sbjct: 6 ILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFT------ENCNSI--------- 50
Query: 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137
++VITD MP ++G D+L++IK+ + + V+I++ ++EGA E+ KP
Sbjct: 51 -DVVITDMKMPKLSGMDILREIKKITP--HMAVIILTGHGDLDNAILAMKEGAFEYLRKP 107
Query: 138 VRLSDLN 144
V DL+
Sbjct: 108 VTAQDLS 114
>pdb|3HZH|A Chain A, Crystal Structure Of The Chex-Chey-Bef3-Mg+2 Complex From
Borrelia Burgdorferi
Length = 157
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 19/124 (15%)
Query: 16 FHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQE 75
F+VL VDDS+ K + ++ + + + +D+ + DG+ + Y N +
Sbjct: 37 FNVLIVDDSVFTVKQLTQIFTSEGFNI--IDTAA-----------DGEEAVIKYKNHYPN 83
Query: 76 VG-VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFF 134
+ V L IT MP M G L I E ++ V+++S+ + CL +GA+ F
Sbjct: 84 IDIVTLXIT---MPKMDGITCLSNIMEFD--KNARVIMISALGKEQLVKDCLIKGAKTFI 138
Query: 135 LKPV 138
+KP+
Sbjct: 139 VKPL 142
>pdb|1DCF|A Chain A, Crystal Structure Of The Receiver Domain Of The Ethylene
Receptor Of Arabidopsis Thaliana
Length = 136
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 22/141 (15%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVG 77
VL +D++ + R + + LL +VTTV S + L + HE H V
Sbjct: 10 VLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVS-HE------HKV--------- 53
Query: 78 VNLVITDYCMPGMTGYDLLKKIKE--SSSLRDIPVVIMSSENV-PSRISRCLEEGAEEFF 134
V D CMPG+ Y + +I E + P+++ S N S +C+ G +
Sbjct: 54 ---VFMDVCMPGVENYQIALRIHEKFTKQRHQRPLLVALSGNTDKSTKEKCMSFGLDGVL 110
Query: 135 LKPVRLSDLNKLKPHLMKTKI 155
LKPV L ++ + L++ ++
Sbjct: 111 LKPVSLDNIRDVLSDLLEPRV 131
>pdb|1XHE|A Chain A, Crystal Structure Of The Receiver Domain Of Redox Response
Regulator Arca
pdb|1XHE|B Chain B, Crystal Structure Of The Receiver Domain Of Redox Response
Regulator Arca
Length = 123
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 21/121 (17%)
Query: 17 HVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEV 76
H+L V+D ++ R ++ + + Y V DG H + E
Sbjct: 5 HILIVEDELVTRNTLKSIFEAEGYDV--------------FEATDGAEMHQIL----SEY 46
Query: 77 GVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLK 136
+NLVI D +PG G L ++++E + ++ ++ ++ + LE GA+++ K
Sbjct: 47 DINLVIMDINLPGKNGLLLARELREQA---NVALMFLTGRDNEVDKILGLEIGADDYITK 103
Query: 137 P 137
P
Sbjct: 104 P 104
>pdb|1XHF|A Chain A, Crystal Structure Of The Bef3-Activated Receiver Domain Of
Redox Response Regulator Arca
pdb|1XHF|B Chain B, Crystal Structure Of The Bef3-Activated Receiver Domain Of
Redox Response Regulator Arca
Length = 123
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 52/121 (42%), Gaps = 21/121 (17%)
Query: 17 HVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEV 76
H+L V+D ++ R ++ + + Y V DG H + E
Sbjct: 5 HILIVEDELVTRNTLKSIFEAEGYDV--------------FEATDGAEXHQIL----SEY 46
Query: 77 GVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLK 136
+NLVI D +PG G L ++++E + ++ + ++ + LE GA+++ K
Sbjct: 47 DINLVIXDINLPGKNGLLLARELREQA---NVALXFLTGRDNEVDKILGLEIGADDYITK 103
Query: 137 P 137
P
Sbjct: 104 P 104
>pdb|1YS6|A Chain A, Crystal Structure Of The Response Regulatory Protein Prra
From Mycobacterium Tuberculosis
pdb|1YS6|B Chain B, Crystal Structure Of The Response Regulatory Protein Prra
From Mycobacterium Tuberculosis
pdb|1YS7|A Chain A, Crystal Structure Of The Response Regulator Protein Prra
Comlexed With Mg2+
pdb|1YS7|B Chain B, Crystal Structure Of The Response Regulator Protein Prra
Comlexed With Mg2+
Length = 233
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 63/125 (50%), Gaps = 22/125 (17%)
Query: 31 IERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGM 90
+ER L+ S ++V T G++AL +S+ P+ ++ D MP +
Sbjct: 23 LERGLRLSGFEVATAVDGAEAL----------RSATENRPDA--------IVLDINMPVL 64
Query: 91 TGYDLLKKIKESSSLRDIPVVIMSSEN-VPSRISRCLEEGAEEFFLKPVRLSDLNKLKPH 149
G ++ ++ + D+PV ++S+ + V R++ LE GA+++ +KP L++L
Sbjct: 65 DGVSVVTALRAMDN--DVPVCVLSARSSVDDRVA-GLEAGADDYLVKPFVLAELVARVKA 121
Query: 150 LMKTK 154
L++ +
Sbjct: 122 LLRRR 126
>pdb|2ZAY|A Chain A, Crystal Structure Of Response Regulator From
Desulfuromonas Acetoxidans
pdb|2ZAY|B Chain B, Crystal Structure Of Response Regulator From
Desulfuromonas Acetoxidans
Length = 147
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%)
Query: 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPV 138
+L+IT+ MP ++G DL +K++ IPV+ +S ++ L+ G +F KPV
Sbjct: 54 HLIITEANMPKISGMDLFNSLKKNPQTASIPVIALSGRATAKEEAQLLDMGFIDFIAKPV 113
>pdb|3KHT|A Chain A, Crystal Structure Of Response Regulator From Hahella
Chejuensis
Length = 144
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 20/115 (17%)
Query: 18 VLAVDDSIIDRKLIERLL--KTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQE 75
VL V+D+ D LI R+L K Q+ VD+G+KAL + Q+
Sbjct: 8 VLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQV------------------QQ 49
Query: 76 VGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGA 130
+L+I D +P G+++ +++ + + P+VI++ R +C GA
Sbjct: 50 AKYDLIILDIGLPIANGFEVXSAVRKPGANQHTPIVILTDNVSDDRAKQCXAAGA 104
>pdb|3Q15|C Chain C, Crystal Structure Of Raph Complexed With Spo0f
pdb|3Q15|D Chain D, Crystal Structure Of Raph Complexed With Spo0f
Length = 126
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 53/126 (42%), Gaps = 20/126 (15%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVG 77
+L VDD R L+ + YQ +G +AL+ + D
Sbjct: 8 ILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPD---------------- 51
Query: 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137
LV+ D +PGM G ++LK++K +I V+IM++ I E GA F KP
Sbjct: 52 --LVLLDMKIPGMDGIEILKRMKVIDE--NIRVIIMTAYGELDMIQESKELGALTHFAKP 107
Query: 138 VRLSDL 143
+ ++
Sbjct: 108 FDIDEI 113
>pdb|1PUX|A Chain A, Nmr Solution Structure Of Bef3-Activated Spo0f, 20
Conformers
pdb|1FSP|A Chain A, Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
20 Structures
pdb|1NAT|A Chain A, Crystal Structure Of Spoof From Bacillus Subtilis
pdb|2FSP|A Chain A, Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
Minimized Average Structure
Length = 124
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 53/126 (42%), Gaps = 20/126 (15%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVG 77
+L VDD R L+ + YQ +G +AL+ + D
Sbjct: 6 ILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPD---------------- 49
Query: 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137
LV+ D +PGM G ++LK++K +I V+IM++ I E GA F KP
Sbjct: 50 --LVLLDMKIPGMDGIEILKRMKVIDE--NIRVIIMTAYGELDMIQESKELGALTHFAKP 105
Query: 138 VRLSDL 143
+ ++
Sbjct: 106 FDIDEI 111
>pdb|3EUL|A Chain A, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|B Chain B, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|C Chain C, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|D Chain D, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
Length = 152
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 26/126 (20%)
Query: 15 QFHVLAVDDSIIDRKLIERLLKTSSYQ--VTTVDSGSKALEFLGLHEDDGQSSHSVYPNM 72
+ V+ DD + R+ + R L S V D G+ ALE + H D
Sbjct: 15 KVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPD----------- 63
Query: 73 HQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIP--VVIMSSENVPSRISRCLEEGA 130
+ + DY MPGM G + ++ ++P V+++S+ + P+ + + L++GA
Sbjct: 64 -------VALLDYRMPGMDGAQVAAAVRS----YELPTRVLLISAHDEPAIVYQALQQGA 112
Query: 131 EEFFLK 136
F LK
Sbjct: 113 AGFLLK 118
>pdb|2JVI|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant H101a From Bacillus Subtilis
Length = 132
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 53/126 (42%), Gaps = 20/126 (15%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVG 77
+L VDD R L+ + YQ +G +AL+ + D
Sbjct: 6 ILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPD---------------- 49
Query: 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137
LV+ D +PGM G ++LK++K +I V+IM++ I E GA F KP
Sbjct: 50 --LVLLDMKIPGMDGIEILKRMKVIDE--NIRVIIMTAYGELDMIQESKELGALTAFAKP 105
Query: 138 VRLSDL 143
+ ++
Sbjct: 106 FDIDEI 111
>pdb|3Q9S|A Chain A, Crystal Structure Of Rra(1-215) From Deinococcus
Radiodurans
Length = 249
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137
+L++ D +P G D++++++++S+L P++++++ + R L GA+++ +KP
Sbjct: 83 DLILLDLGLPDFDGGDVVQRLRKNSAL---PIIVLTARDTVEEKVRLLGLGADDYLIKP 138
>pdb|1SRR|A Chain A, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|B Chain B, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|C Chain C, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1PEY|A Chain A, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
pdb|1PEY|B Chain B, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
pdb|1PEY|C Chain C, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
Length = 124
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 53/126 (42%), Gaps = 20/126 (15%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVG 77
+L VDD R L+ + YQ +G +AL+ + D
Sbjct: 6 ILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPD---------------- 49
Query: 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137
LV+ D +PGM G ++LK++K +I V+IM++ I E GA F KP
Sbjct: 50 --LVLLDMKIPGMDGIEILKRMKVIDE--NIRVIIMTAYGELDMIQESKELGALTHFAKP 105
Query: 138 VRLSDL 143
+ ++
Sbjct: 106 FDIDEI 111
>pdb|3N53|A Chain A, Crystal Structure Of A Response Regulator Receiver
Modulated Diguanylate Cyclase From Pelobacter
Carbinolicus
pdb|3N53|B Chain B, Crystal Structure Of A Response Regulator Receiver
Modulated Diguanylate Cyclase From Pelobacter
Carbinolicus
Length = 140
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPV 138
+LVI D + G +L K+K S L+++P++++ S I L GA+++ KP
Sbjct: 48 DLVILDXDIIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPF 107
Query: 139 RLSD-LNKLKPHL 150
+D L++++ HL
Sbjct: 108 NRNDLLSRIEIHL 120
>pdb|3C3M|A Chain A, Crystal Structure Of The N-Terminal Domain Of Response
Regulator Receiver Protein From Methanoculleus
Marisnigri Jr1
Length = 138
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 58/141 (41%), Gaps = 18/141 (12%)
Query: 14 SQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMH 73
S + +L VDDS + L+ Y+ T SG + LE L D
Sbjct: 2 SLYTILVVDDSPXIVDVFVTXLERGGYRPITAFSGEECLEALNATPPD------------ 49
Query: 74 QEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEF 133
LV+ D G++ L++IK + RDIPV+ ++++ + + E++
Sbjct: 50 ------LVLLDIXXEPXDGWETLERIKTDPATRDIPVLXLTAKPLTPEEANEYGSYIEDY 103
Query: 134 FLKPVRLSDLNKLKPHLMKTK 154
LKP L + H++ +
Sbjct: 104 ILKPTTHHQLYEAIEHVLARR 124
>pdb|1F51|E Chain E, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|F Chain F, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|G Chain G, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|H Chain H, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
Length = 119
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 53/126 (42%), Gaps = 20/126 (15%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVG 77
+L VDD R L+ + YQ +G +AL+ + D
Sbjct: 4 ILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPD---------------- 47
Query: 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137
LV+ D +PGM G ++LK++K +I V+IM++ I E GA F KP
Sbjct: 48 --LVLLDMKIPGMDGIEILKRMKVIDE--NIRVIIMTAYGELDMIQESKELGALTHFAKP 103
Query: 138 VRLSDL 143
+ ++
Sbjct: 104 FDIDEI 109
>pdb|3TMY|A Chain A, Chey From Thermotoga Maritima (Mn-Iii)
pdb|3TMY|B Chain B, Chey From Thermotoga Maritima (Mn-Iii)
pdb|4TMY|A Chain A, Chey From Thermotoga Maritima (mg-iv)
pdb|4TMY|B Chain B, Chey From Thermotoga Maritima (mg-iv)
pdb|1TMY|A Chain A, Chey From Thermotoga Maritima (Apo-I)
pdb|2TMY|A Chain A, Chey From Thermotoga Maritima (Apo-Ii)
Length = 120
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 60/126 (47%), Gaps = 21/126 (16%)
Query: 17 HVLAVDDSIIDRKLIERLLKTSSYQVT-TVDSGSKALEFLGLHEDDGQSSHSVYPNMHQE 75
VL VDD+ R +++ ++ + Y+V +G +A+E ++E
Sbjct: 4 RVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVE------------------KYKE 45
Query: 76 VGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFL 135
+ ++V D MP M G D +K+I + + +++ S+ + + ++ GA++F +
Sbjct: 46 LKPDIVTMDITMPEMNGIDAIKEIMKIDP--NAKIIVCSAMGQQAMVIEAIKAGAKDFIV 103
Query: 136 KPVRLS 141
KP + S
Sbjct: 104 KPFQPS 109
>pdb|1U0S|Y Chain Y, Chemotaxis Kinase Chea P2 Domain In Complex With Response
Regulator Chey From The Thermophile Thermotoga Maritima
Length = 118
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 60/126 (47%), Gaps = 21/126 (16%)
Query: 17 HVLAVDDSIIDRKLIERLLKTSSYQVT-TVDSGSKALEFLGLHEDDGQSSHSVYPNMHQE 75
VL VDD+ R +++ ++ + Y+V +G +A+E ++E
Sbjct: 3 RVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVE------------------KYKE 44
Query: 76 VGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFL 135
+ ++V D MP M G D +K+I + + +++ S+ + + ++ GA++F +
Sbjct: 45 LKPDIVTMDITMPEMNGIDAIKEIMKIDP--NAKIIVCSAMGQQAMVIEAIKAGAKDFIV 102
Query: 136 KPVRLS 141
KP + S
Sbjct: 103 KPFQPS 108
>pdb|1ZGZ|A Chain A, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
pdb|1ZGZ|B Chain B, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
pdb|1ZGZ|C Chain C, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
pdb|1ZGZ|D Chain D, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
Length = 122
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 60/129 (46%), Gaps = 25/129 (19%)
Query: 17 HVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEV 76
H++ V+D + + ++ Y V+ SG+ GL E + Q
Sbjct: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGA------GLRE------------IXQNQ 45
Query: 77 GVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRC--LEEGAEEFF 134
V+L++ D +P G L + ++E S+ + +++++ + RI R LE GA+++
Sbjct: 46 SVDLILLDINLPDENGLXLTRALRERST---VGIILVTGRS--DRIDRIVGLEXGADDYV 100
Query: 135 LKPVRLSDL 143
KP+ L +L
Sbjct: 101 TKPLELREL 109
>pdb|1ZY2|A Chain A, Crystal Structure Of The Phosphorylated Receiver Domain Of
The Transcription Regulator Ntrc1 From Aquifex Aeolicus
pdb|1ZY2|B Chain B, Crystal Structure Of The Phosphorylated Receiver Domain Of
The Transcription Regulator Ntrc1 From Aquifex Aeolicus
Length = 150
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 20/128 (15%)
Query: 16 FHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQE 75
+VL ++D + R L+E L +V + + G +A + L E
Sbjct: 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLS------------------E 42
Query: 76 VGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFL 135
N+V+ +P + G ++LK IKE S + V++++ ++ GA +F
Sbjct: 43 KHFNVVLLXLLLPDVNGLEILKWIKERSP--ETEVIVITGHGTIKTAVEAMKMGAYDFLT 100
Query: 136 KPVRLSDL 143
KP L ++
Sbjct: 101 KPCMLEEI 108
>pdb|2JVK|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant L66a From Bacillus Subtilis
Length = 132
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 20/126 (15%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVG 77
+L VDD R L+ + YQ +G +AL+ + D
Sbjct: 6 ILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPD---------------- 49
Query: 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137
LV+ D +PGM G ++ K++K +I V+IM++ I E GA F KP
Sbjct: 50 --LVLLDMKIPGMDGIEIAKRMKVIDE--NIRVIIMTAYGELDMIQESKELGALTHFAKP 105
Query: 138 VRLSDL 143
+ ++
Sbjct: 106 FDIDEI 111
>pdb|2JVJ|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant I90a From Bacillus Subtilis
Length = 132
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 20/126 (15%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVG 77
+L VDD R L+ + YQ +G +AL+ + D
Sbjct: 6 ILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPD---------------- 49
Query: 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137
LV+ D +PGM G ++LK++K +I V+IM++ E GA F KP
Sbjct: 50 --LVLLDMKIPGMDGIEILKRMKVIDE--NIRVIIMTAYGELDMAQESKELGALTHFAKP 105
Query: 138 VRLSDL 143
+ ++
Sbjct: 106 FDIDEI 111
>pdb|1ZH2|A Chain A, Crystal Structure Of The Calcium-Bound Receiver Domain Of
Kdp Potassium Transport System Response Regulator Kdpe
pdb|1ZH2|B Chain B, Crystal Structure Of The Calcium-Bound Receiver Domain Of
Kdp Potassium Transport System Response Regulator Kdpe
pdb|1ZH4|A Chain A, Crystal Structure Of The Mg+2/bef3-bound Receiver Domain
Of Kdp Potassium Transport System Response Regulator
Kdpe
pdb|1ZH4|B Chain B, Crystal Structure Of The Mg+2/bef3-bound Receiver Domain
Of Kdp Potassium Transport System Response Regulator
Kdpe
Length = 121
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPV 138
+L+I D +P G + ++ +++ S+ +PV+++S+ + S L+ GA+++ KP
Sbjct: 47 DLIILDLGLPDGDGIEFIRDLRQWSA---VPVIVLSARSEESDKIAALDAGADDYLSKPF 103
Query: 139 RLSDLN 144
+ +L
Sbjct: 104 GIGELQ 109
>pdb|1NXO|A Chain A, Micarec Ph7.0
pdb|1NXP|A Chain A, Micarec Ph4.5
pdb|1NXS|A Chain A, Micarec Ph4.9
pdb|1NXV|A Chain A, Micarec Ph 4.2
pdb|1NXW|A Chain A, Micarec Ph 5.1
pdb|1NXX|A Chain A, Micarec Ph 5.5
pdb|2A9O|A Chain A, Crystal Structures Of An Activated Yycf Homologue, The
Essential Response Regulator From S.Pneumoniae In
Complex With Bef3 And The Effect Of Ph On Bef3 Binding,
Possible Phosphate In The Active Site
pdb|2A9P|A Chain A, Medium Resolution Bef3 Bound Rr02-Rec
pdb|2A9Q|A Chain A, Low Resolution Structure Rr02-rec On Bef3 Bound
Length = 120
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 57/121 (47%), Gaps = 21/121 (17%)
Query: 17 HVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEV 76
+L VDD +I+ + Y+V T +G +ALE + D
Sbjct: 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPD--------------- 47
Query: 77 GVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLK 136
++I D +P + G ++ K I+++SS +P++++S+++ LE GA+++ K
Sbjct: 48 ---IIILDLMLPEIDGLEVAKTIRKTSS---VPILMLSAKDSEFDKVIGLELGADDYVTK 101
Query: 137 P 137
P
Sbjct: 102 P 102
>pdb|3LTE|A Chain A, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|B Chain B, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|C Chain C, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|D Chain D, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|E Chain E, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|F Chain F, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|G Chain G, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|H Chain H, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|I Chain I, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|J Chain J, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|K Chain K, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|L Chain L, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|M Chain M, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|N Chain N, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|O Chain O, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|P Chain P, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|Q Chain Q, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|R Chain R, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|S Chain S, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|T Chain T, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|U Chain U, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|V Chain V, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|W Chain W, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|X Chain X, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
Length = 132
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 55/120 (45%), Gaps = 19/120 (15%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVG 77
+L VDD IER+LK +QV +G A G + P
Sbjct: 9 ILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDA----------GIKLSTFEP------- 51
Query: 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137
++ D MP + G D+++ +++ + + + P +++ S +++ + + EGA+++ KP
Sbjct: 52 -AIMTLDLSMPKLDGLDVIRSLRQ-NKVANQPKILVVSGLDKAKLQQAVTEGADDYLEKP 109
>pdb|2FTK|E Chain E, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|F Chain F, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|G Chain G, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|H Chain H, Berylloflouride Spo0f Complex With Spo0b
Length = 124
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 20/126 (15%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVG 77
+L VDD R L+ + YQ +G +AL+ + D
Sbjct: 6 ILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPD---------------- 49
Query: 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137
LV+ +PGM G ++LK++K +I V+IM++ I E GA F KP
Sbjct: 50 --LVLLXMKIPGMDGIEILKRMKVIDE--NIRVIIMTAYGELDMIQESKELGALTHFAKP 105
Query: 138 VRLSDL 143
+ ++
Sbjct: 106 FDIDEI 111
>pdb|3F6P|A Chain A, Crystal Structure Of Unphosphorelated Receiver Domain Of
Yycf
Length = 120
Score = 35.4 bits (80), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 63/128 (49%), Gaps = 25/128 (19%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVG 77
+L VDD ++E L+ Y+V G++A+E M +E+
Sbjct: 5 ILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVE------------------MVEELQ 46
Query: 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRC--LEEGAEEFFL 135
+L++ D +P G ++ +++++ D+P++++++++ S I + LE GA+++
Sbjct: 47 PDLILLDIMLPNKDGVEVCREVRKKY---DMPIIMLTAKD--SEIDKVIGLEIGADDYVT 101
Query: 136 KPVRLSDL 143
KP +L
Sbjct: 102 KPFSTREL 109
>pdb|1MVO|A Chain A, Crystal Structure Of The Phop Receiver Domain From
Bacillus Subtilis
Length = 136
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 69/140 (49%), Gaps = 21/140 (15%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVG 77
+L VDD L++ L+ S Y V T G +AL + + + P
Sbjct: 6 ILVVDDEESIVTLLQYNLERSGYDVITASDGEEAL----------KKAETEKP------- 48
Query: 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137
+L++ D +P + G ++ K++++ + P++++++++ LE GA+++ KP
Sbjct: 49 -DLIVLDVMLPKLDGIEVCKQLRQQKLM--FPILMLTAKDEEFDKVLGLELGADDYMTKP 105
Query: 138 VRLSDLN-KLKPHLMKTKIK 156
++N ++K L +++I+
Sbjct: 106 FSPREVNARVKAILRRSEIR 125
>pdb|2ZWM|A Chain A, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
pdb|2ZWM|B Chain B, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
Length = 130
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 63/128 (49%), Gaps = 25/128 (19%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVG 77
+L VDD ++E L+ Y+V G++A+E M +E+
Sbjct: 5 ILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVE------------------MVEELQ 46
Query: 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRC--LEEGAEEFFL 135
+L++ D +P G ++ +++++ D+P++++++++ S I + LE GA+++
Sbjct: 47 PDLILLDIMLPNKDGVEVCREVRKKY---DMPIIMLTAKD--SEIDKVIGLEIGADDYVT 101
Query: 136 KPVRLSDL 143
KP +L
Sbjct: 102 KPFSTREL 109
>pdb|3B2N|A Chain A, Crystal Structure Of Dna-binding Response Regulator, Luxr
Family, From Staphylococcus Aureus
Length = 133
Score = 35.0 bits (79), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 74 QEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEF 133
+E N+VI D MPGMTG ++L +I++ +I V+I+++ P + + + +
Sbjct: 46 EEYNPNVVILDIEMPGMTGLEVLAEIRKKH--LNIKVIIVTTFKRPGYFEKAVVNDVDAY 103
Query: 134 FLKPVRLSDL 143
LK + +L
Sbjct: 104 VLKERSIEEL 113
>pdb|1OXB|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P2(1)2(1)2(1)
pdb|1OXK|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|D Chain D, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|F Chain F, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|H Chain H, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|J Chain J, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|L Chain L, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
Length = 134
Score = 35.0 bits (79), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 57/126 (45%), Gaps = 21/126 (16%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVG 77
+L V+D+ +++++I+R+L + +E + L D ++ V +
Sbjct: 4 ILVVEDNHVNQEVIKRMLNL------------EGIENIELACDGQEAFDKVKELTSKGEN 51
Query: 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDI----PVVIMSSENVPSRISRCLEEGAEEF 133
N++ D MP + G K I+ RD+ P+V +++ S I CLE G F
Sbjct: 52 YNMIFMDVQMPKVDGLLSTKMIR-----RDLGYTSPIVALTAFADDSNIKECLESGMNGF 106
Query: 134 FLKPVR 139
KP++
Sbjct: 107 LSKPIK 112
>pdb|3HDV|A Chain A, Crystal Structure Of Response Regulator Receiver Protein
From Pseudomonas Putida
pdb|3HDV|B Chain B, Crystal Structure Of Response Regulator Receiver Protein
From Pseudomonas Putida
pdb|3HDV|C Chain C, Crystal Structure Of Response Regulator Receiver Protein
From Pseudomonas Putida
pdb|3HDV|D Chain D, Crystal Structure Of Response Regulator Receiver Protein
From Pseudomonas Putida
Length = 136
Score = 35.0 bits (79), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 59/129 (45%), Gaps = 18/129 (13%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVG 77
VL VDD+ ++R+ + LK S+ ++ +G DG +Y + + +G
Sbjct: 10 VLVVDDNAVNREALILYLK------------SRGIDAVGA---DGAEEARLYLHYQKRIG 54
Query: 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137
L ITD +G DL++ I+ +S + ++++S + G +F LKP
Sbjct: 55 --LXITDLRXQPESGLDLIRTIR-ASERAALSIIVVSGDTDVEEAVDVXHLGVVDFLLKP 111
Query: 138 VRLSDLNKL 146
V L L +L
Sbjct: 112 VDLGKLLEL 120
>pdb|2R25|B Chain B, Complex Of Ypd1 And Sln1-R1 With Bound Mg2+ And Bef3-
Length = 133
Score = 35.0 bits (79), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 57/126 (45%), Gaps = 21/126 (16%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVG 77
+L V+D+ +++++I+R+L + +E + L D ++ V +
Sbjct: 5 ILVVEDNHVNQEVIKRMLNL------------EGIENIELACDGQEAFDKVKELTSKGEN 52
Query: 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDI----PVVIMSSENVPSRISRCLEEGAEEF 133
N++ D MP + G K I+ RD+ P+V +++ S I CLE G F
Sbjct: 53 YNMIFMDVQMPKVDGLLSTKMIR-----RDLGYTSPIVALTAFADDSNIKECLESGMNGF 107
Query: 134 FLKPVR 139
KP++
Sbjct: 108 LSKPIK 113
>pdb|2JK1|A Chain A, Crystal Structure Of The Wild-Type Hupr Receiver Domain
pdb|2VUI|B Chain B, Crystal Structure Of The Hupr Receiver Domain In
Inhibitory Phospho-State
Length = 139
Score = 34.3 bits (77), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 74 QEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEF 133
+E V ++I D MPG TG D L +++E + ++I + S ++ + G +F
Sbjct: 41 EEEWVQVIICDQRMPGRTGVDFLTEVRERWP-ETVRIIITGYTDSASMMAAINDAGIHQF 99
Query: 134 FLKP 137
KP
Sbjct: 100 LTKP 103
>pdb|3NHM|A Chain A, Crystal Structure Of A Response Regulator From Myxococcus
Xanthus
pdb|3NHM|B Chain B, Crystal Structure Of A Response Regulator From Myxococcus
Xanthus
Length = 133
Score = 33.9 bits (76), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 50/122 (40%), Gaps = 20/122 (16%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVG 77
VL V++S R+ + RLL + + TT G+ L+ H D
Sbjct: 7 VLIVENSWTXRETL-RLLLSGEFDCTTAADGASGLQQALAHPPD---------------- 49
Query: 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137
++I+D G GY L + +L+ IPV+ +S P + + + +KP
Sbjct: 50 --VLISDVNXDGXDGYALCGHFRSEPTLKHIPVIFVSG-YAPRTEGPADQPVPDAYLVKP 106
Query: 138 VR 139
V+
Sbjct: 107 VK 108
>pdb|1NXT|A Chain A, Micarec Ph 4.0
pdb|2A9R|A Chain A, Rr02-Rec Phosphate In The Active Site
Length = 120
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 21/121 (17%)
Query: 17 HVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEV 76
+L VDD +I+ + Y+V T +G +ALE + D
Sbjct: 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPD--------------- 47
Query: 77 GVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLK 136
++I +P + G ++ K I+++SS +P++++S+++ LE GA+++ K
Sbjct: 48 ---IIILXLMLPEIDGLEVAKTIRKTSS---VPILMLSAKDSEFDKVIGLELGADDYVTK 101
Query: 137 P 137
P
Sbjct: 102 P 102
>pdb|2NT4|A Chain A, Receiver Domain From Myxococcus Xanthus Social Motility
Prot (H92f Mutant)
Length = 127
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 89 GMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPV 138
G GY + K+K+ L+++P+VI+ + + ++ R L+ A+E+ KPV
Sbjct: 62 GQNGYLICGKLKKDDDLKNVPIVIIGNPDGFAQF-RKLKAHADEYVAKPV 110
>pdb|2VUH|B Chain B, Crystal Structure Of The D55e Mutant Of The Hupr Receiver
Domain
Length = 139
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 74 QEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEF 133
+E V ++I + MPG TG D L +++E + ++I + S ++ + G +F
Sbjct: 41 EEEWVQVIICEQRMPGRTGVDFLTEVRERWP-ETVRIIITGYTDSASMMAAINDAGIHQF 99
Query: 134 FLKP 137
KP
Sbjct: 100 LTKP 103
>pdb|3NNS|A Chain A, Bef3 Activated Drrb Receiver Domain
pdb|3NNS|B Chain B, Bef3 Activated Drrb Receiver Domain
Length = 117
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/85 (20%), Positives = 43/85 (50%), Gaps = 10/85 (11%)
Query: 72 MHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAE 131
++ E ++V+ D +P +GY++ + IKE+ + V++++ + + + E GA+
Sbjct: 38 LNDEEAFHVVVLDVXLPDYSGYEICRXIKETRP--ETWVILLTLLSDDESVLKGFEAGAD 95
Query: 132 EFFLKPVRLSDLNKLKPHLMKTKIK 156
++ KP P ++ ++K
Sbjct: 96 DYVTKP--------FNPEILLARVK 112
>pdb|2GKG|A Chain A, Receiver Domain From Myxococcus Xanthus Social Motility
Prot
pdb|2I6F|A Chain A, Receiver Domain From Myxococcus Xanthus Social Motility
Protein Frzs
pdb|2I6F|B Chain B, Receiver Domain From Myxococcus Xanthus Social Motility
Protein Frzs
pdb|2I6F|C Chain C, Receiver Domain From Myxococcus Xanthus Social Motility
Protein Frzs
Length = 127
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 89 GMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPV 138
G GY + K+K+ L+++P+VI+ + + ++ R L+ A+E+ KPV
Sbjct: 62 GQNGYLICGKLKKDDDLKNVPIVIIGNPDGFAQ-HRKLKAHADEYVAKPV 110
>pdb|3NNN|A Chain A, Bef3 Activated Drrd Receiver Domain
pdb|3NNN|B Chain B, Bef3 Activated Drrd Receiver Domain
Length = 122
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 41/66 (62%), Gaps = 4/66 (6%)
Query: 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSS-ENVPSRISRCLEEGAEEFFLKP 137
++VI D +P G+++LK ++ES + PV+++++ +V R+ + L GA+++ KP
Sbjct: 48 DVVILDIMLPVHDGWEILKSMRESGV--NTPVLMLTALSDVEYRV-KGLNMGADDYLPKP 104
Query: 138 VRLSDL 143
L +L
Sbjct: 105 FDLREL 110
>pdb|1P2F|A Chain A, Crystal Structure Analysis Of Response Regulator Drrb, A
Thermotoga Maritima OmprPHOB HOMOLOG
Length = 220
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/66 (22%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 72 MHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAE 131
++ E ++V+ D +P +GY++ + IKE+ + V++++ + + + E GA+
Sbjct: 38 LNDEEAFHVVVLDVXLPDYSGYEICRXIKETRP--ETWVILLTLLSDDESVLKGFEAGAD 95
Query: 132 EFFLKP 137
++ KP
Sbjct: 96 DYVTKP 101
>pdb|1A04|A Chain A, The Structure Of The NitrateNITRITE RESPONSE REGULATOR
Protein Narl In The Monoclinic C2 Crystal Form
pdb|1A04|B Chain B, The Structure Of The NitrateNITRITE RESPONSE REGULATOR
Protein Narl In The Monoclinic C2 Crystal Form
pdb|1RNL|A Chain A, The NitrateNITRITE RESPONSE REGULATOR PROTEIN NARL FROM
NARL
Length = 215
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 86 CMPGMTGYDLLKKIKESS-SLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLN 144
MPGM G + L K++E S S R +V+ S N + L+ GA+ + LK + DL
Sbjct: 60 NMPGMNGLETLDKLREKSLSGR---IVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLL 116
Query: 145 K 145
K
Sbjct: 117 K 117
>pdb|1KGS|A Chain A, Crystal Structure At 1.50 A Of An OmprPHOB HOMOLOG FROM
THERMOTOGA Maritima
Length = 225
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSS-ENVPSRISRCLEEGAEEFFLKP 137
++VI D +P G+++LK +ES + PV+ +++ +V R+ + L GA+++ KP
Sbjct: 48 DVVILDIXLPVHDGWEILKSXRESGV--NTPVLXLTALSDVEYRV-KGLNXGADDYLPKP 104
Query: 138 VRLSDL 143
L +L
Sbjct: 105 FDLREL 110
>pdb|3KYJ|B Chain B, Crystal Structure Of The P1 Domain Of Chea3 In Complex
With Chey6 From R. Sphaeroides
Length = 145
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 24/128 (18%)
Query: 14 SQFHVLAVDDSIIDRKLIERLLKT-SSYQVTT-VDSGSKALEFLGLHEDDGQSSHSVYPN 71
S ++V+ VDD+ + R I +KT ++V +G +AL+ L + PN
Sbjct: 12 SPYNVMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKL-----------AAQPN 60
Query: 72 MHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPS--RISRCLEEG 129
V+L++ D MP M G + L+ K + + + ++SS V +R E G
Sbjct: 61 ------VDLILLDIEMPVMDGMEFLRHAKLKTRAK---ICMLSSVAVSGSPHAARARELG 111
Query: 130 AEEFFLKP 137
A+ KP
Sbjct: 112 ADGVVAKP 119
>pdb|3HDG|A Chain A, Crystal Structure Of The N-Terminal Domain Of An
Uncharacterized Protein (Ws1339) From Wolinella
Succinogenes
pdb|3HDG|B Chain B, Crystal Structure Of The N-Terminal Domain Of An
Uncharacterized Protein (Ws1339) From Wolinella
Succinogenes
pdb|3HDG|D Chain D, Crystal Structure Of The N-Terminal Domain Of An
Uncharacterized Protein (Ws1339) From Wolinella
Succinogenes
pdb|3HDG|E Chain E, Crystal Structure Of The N-Terminal Domain Of An
Uncharacterized Protein (Ws1339) From Wolinella
Succinogenes
Length = 137
Score = 31.2 bits (69), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 20/126 (15%)
Query: 13 ESQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNM 72
E +L V+D R+ + ++ +V + G + GLH D
Sbjct: 5 EVALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGLHAPD----------- 53
Query: 73 HQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEE 132
++ITD P + G + L +IK + V+++S+ + + +E G
Sbjct: 54 -------VIITDIRXPKLGGLEXLDRIKAGGA--KPYVIVISAFSEXKYFIKAIELGVHL 104
Query: 133 FFLKPV 138
F KP+
Sbjct: 105 FLPKPI 110
>pdb|2QZJ|A Chain A, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|B Chain B, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|C Chain C, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|D Chain D, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|E Chain E, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|F Chain F, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
Length = 136
Score = 30.4 bits (67), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 10/91 (10%)
Query: 56 GLHEDDGQSSHSVYPNMHQEVG------VNLVITDYCMPGMTGYDLLKKIKESSSLRDIP 109
G E+ G S Y N + +G +L+ + + G+ L KKI+ ++ P
Sbjct: 22 GFLEEKGISIDLAY-NCEEAIGKIFSNKYDLIFLEIILSDGDGWTLCKKIRNVTTC---P 77
Query: 110 VVIMSSENVPSRISRCLEEGAEEFFLKPVRL 140
+V + N I L G +++ +KP+ L
Sbjct: 78 IVYXTYINEDQSILNALNSGGDDYLIKPLNL 108
>pdb|2NT3|A Chain A, Receiver Domain From Myxococcus Xanthus Social Motility
Protein Frzs (Y102a Mutant)
Length = 127
Score = 30.4 bits (67), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 89 GMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPV 138
G GY + K+K+ L+++P+VI+ + + ++ R L+ A+E KPV
Sbjct: 62 GQNGYLICGKLKKDDDLKNVPIVIIGNPDGFAQ-HRKLKAHADEAVAKPV 110
>pdb|1DBW|A Chain A, Crystal Structure Of Fixj-N
pdb|1DBW|B Chain B, Crystal Structure Of Fixj-N
pdb|1DCK|A Chain A, Structure Of Unphosphorylated Fixj-N Complexed With Mn2+
pdb|1DCK|B Chain B, Structure Of Unphosphorylated Fixj-N Complexed With Mn2+
pdb|1DCM|A Chain A, Structure Of Unphosphorylated Fixj-N With An Atypical
Conformer (Monomer A)
pdb|1DCM|B Chain B, Structure Of Unphosphorylated Fixj-N With An Atypical
Conformer (Monomer A)
Length = 126
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIP-VVIMSSENVPSRISRCLEEGAEEFFLKP 137
+++TD MP M+G +LL+ + + +IP +VI +VP + ++ GA +F KP
Sbjct: 49 GVLVTDLRMPDMSGVELLRNLGDLKI--NIPSIVITGHGDVPMAV-EAMKAGAVDFIEKP 105
>pdb|1NY5|A Chain A, Crystal Structure Of Sigm54 Activator (Aaa+ Atpase) In The
Inactive State
pdb|1NY5|B Chain B, Crystal Structure Of Sigm54 Activator (Aaa+ Atpase) In The
Inactive State
Length = 387
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 56/127 (44%), Gaps = 20/127 (15%)
Query: 17 HVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEV 76
+VL ++D + R L+E L +V + + G +A + L E
Sbjct: 2 NVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLL------------------SEK 43
Query: 77 GVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLK 136
N+V+ D +P + G ++LK IKE S + V++++ ++ GA +F K
Sbjct: 44 HFNVVLLDLLLPDVNGLEILKWIKERSP--ETEVIVITGHGTIKTAVEAMKMGAYDFLTK 101
Query: 137 PVRLSDL 143
P L ++
Sbjct: 102 PCMLEEI 108
>pdb|2QR3|A Chain A, Crystal Structure Of The N-Terminal Signal Receiver Domain
Of Two- Component System Response Regulator From
Bacteroides Fragilis
Length = 140
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 89 GMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137
G G L +IK RD+PVV+ ++ R ++EGA +F +KP
Sbjct: 64 GNEGLFWLHEIKRQ--YRDLPVVLFTAYADIDLAVRGIKEGASDFVVKP 110
>pdb|3AFH|A Chain A, Crystal Structure Of Thermotoga Maritima Nondiscriminating
Glutamyl- Trna Synthetase In Complex With A Glutamyl-Amp
Analog
Length = 488
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 69 YPNMHQEVGVNLVITDYCMPGMTGY-DLLKKIKE--SSSLRDIPVVIMSSENVPS 120
YP+ ++E G + I +PG T + DLLK E +S+L D +IM S P+
Sbjct: 146 YPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYMEFDNSTLEDF--IIMKSNGFPT 198
>pdb|3AKZ|B Chain B, Crystal Structure Of Thermotoga Maritima Nondiscriminating
Glutamyl- Trna Synthetase In Complex With Trnagln And A
Glutamyl-Amp Analog
pdb|3AKZ|D Chain D, Crystal Structure Of Thermotoga Maritima Nondiscriminating
Glutamyl- Trna Synthetase In Complex With Trnagln And A
Glutamyl-Amp Analog
pdb|3AKZ|C Chain C, Crystal Structure Of Thermotoga Maritima Nondiscriminating
Glutamyl- Trna Synthetase In Complex With Trnagln And A
Glutamyl-Amp Analog
pdb|3AKZ|A Chain A, Crystal Structure Of Thermotoga Maritima Nondiscriminating
Glutamyl- Trna Synthetase In Complex With Trnagln And A
Glutamyl-Amp Analog
Length = 487
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 69 YPNMHQEVGVNLVITDYCMPGMTGY-DLLKKIKE--SSSLRDIPVVIMSSENVPS 120
YP+ ++E G + I +PG T + DLLK E +S+L D +IM S P+
Sbjct: 145 YPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYMEFDNSTLEDF--IIMKSNGFPT 197
>pdb|3AL0|C Chain C, Crystal Structure Of The Glutamine Transamidosome From
Thermotoga Maritima In The Glutamylation State
Length = 592
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 69 YPNMHQEVGVNLVITDYCMPGMTGY-DLLKKIKE--SSSLRDIPVVIMSSENVPS 120
YP+ ++E G + I +PG T + DLLK E +S+L D +IM S P+
Sbjct: 250 YPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYMEFDNSTLEDF--IIMKSNGFPT 302
>pdb|3KYI|B Chain B, Crystal Structure Of The Phosphorylated P1 Domain Of Chea3
In Complex With Chey6 From R. Sphaeroides
Length = 145
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 20/126 (15%)
Query: 14 SQFHVLAVDDSIIDRKLIERLLKT-SSYQVTT-VDSGSKALEFLGLHEDDGQSSHSVYPN 71
S ++V+ VDD+ + R I +KT ++V +G +AL+ L + PN
Sbjct: 12 SPYNVMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKL-----------AAQPN 60
Query: 72 MHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAE 131
V+L++ + MP M G + L+ K + + + ++ P +R E GA+
Sbjct: 61 ------VDLILLNIEMPVMDGMEFLRHAKLKTRAKICMLASVAVSGSP-HAARARELGAD 113
Query: 132 EFFLKP 137
KP
Sbjct: 114 GVVAKP 119
>pdb|2PKX|A Chain A, E.Coli Response Regulator Phop Receiver Domain
pdb|2PKX|B Chain B, E.Coli Response Regulator Phop Receiver Domain
pdb|2PL1|A Chain A, Berrylium Fluoride Activated Receiver Domain Of E.Coli
Phop
Length = 121
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/126 (17%), Positives = 54/126 (42%), Gaps = 20/126 (15%)
Query: 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVG 77
VL V+D+ + R ++ ++ + +QV + +A +L H D
Sbjct: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPD---------------- 46
Query: 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137
+ I D +P G L+++ + + +P++++++ L GA+++ KP
Sbjct: 47 --IAIVDLGLPDEDGLSLIRRWRSNDV--SLPILVLTARESWQDKVEVLSAGADDYVTKP 102
Query: 138 VRLSDL 143
+ ++
Sbjct: 103 FHIEEV 108
>pdb|4EUK|A Chain A, Crystal Structure
Length = 153
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/156 (18%), Positives = 61/156 (39%), Gaps = 44/156 (28%)
Query: 14 SQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMH 73
S+ +L V+D+ I+ + + ++K + + ++G +A+ + SS+
Sbjct: 7 SKPKILLVEDNKINIMVAKSMMKQLGHTMDIANNGVEAITAIN------SSSY------- 53
Query: 74 QEVGVNLVITDYCMP---GMTGYDLLKKIKESSSLRD----------------------- 107
+LV+ D CMP G+ L++ +E+ +
Sbjct: 54 -----DLVLMDVCMPVLDGLKATRLIRSYEETGNWNAAIEAGVDISTSENEQVCMRPTNR 108
Query: 108 IPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDL 143
+P++ M++ + C G + F KPV L L
Sbjct: 109 LPIIAMTANTLAESSEECYANGMDSFISKPVTLQKL 144
>pdb|3LUA|A Chain A, Crystal Structure Of A Signal Receiver Domain Of Two
Component Signal Transduction (Histidine Kinase) From
Clostridium Thermocellum
Length = 140
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 66 HSVYPNMHQEVGVNLVITDYCMP-GMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISR 124
+S++ ++ + L+I D P G ++L I+ +S + PV+I + + P
Sbjct: 42 YSIFKDLD---SITLIIXDIAFPVEKEGLEVLSAIRNNSRTANTPVIIATKSDNPGYRHA 98
Query: 125 CLEEGAEEFFLKP 137
L+ ++ LKP
Sbjct: 99 ALKFKVSDYILKP 111
>pdb|3VSG|B Chain B, Crystal Structure Of Iron Free 1,6-apd,
2-animophenol-1,6-dioxygenase
pdb|3VSG|D Chain D, Crystal Structure Of Iron Free 1,6-apd,
2-animophenol-1,6-dioxygenase
pdb|3VSH|B Chain B, Crystal Structure Of Native 1,6-apd (with Iron),
2-animophenol-1,6- Dioxygenase
pdb|3VSH|D Chain D, Crystal Structure Of Native 1,6-apd (with Iron),
2-animophenol-1,6- Dioxygenase
pdb|3VSI|B Chain B, Crystal Structure Of Native 1,6-apd
(2-animophenol-1,6-dioxygenase) Complex With
4-nitrocatechol
pdb|3VSI|D Chain D, Crystal Structure Of Native 1,6-apd
(2-animophenol-1,6-dioxygenase) Complex With
4-nitrocatechol
pdb|3VSJ|B Chain B, Crystal Structure Of 1,6-apd
(2-animophenol-1,6-dioxygenase) Complexed With
Intermediate Products
pdb|3VSJ|D Chain D, Crystal Structure Of 1,6-apd
(2-animophenol-1,6-dioxygenase) Complexed With
Intermediate Products
Length = 312
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 24/105 (22%)
Query: 34 LLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQ---EVGVNLVITDYCMPGM 90
LL S + +T+V FLG+ E G+S ++PN+ + + V++ + + C
Sbjct: 56 LLVHSPHWITSVGH-----HFLGVPELSGKSVDPIFPNVFRYDFSLNVDVELAEACAEEG 110
Query: 91 TGYDLLKKIKESSSLR----------------DIPVVIMSSENVP 119
L+ K+ + R DIPVV +S+ N P
Sbjct: 111 RKAGLVTKMMRNPKFRVDYGTITTLHLIRPQWDIPVVGISANNSP 155
>pdb|2RJN|A Chain A, Crystal Structure Of An Uncharacterized Protein Q2bku2
From Neptuniibacter Caesariensis
Length = 154
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 53/132 (40%), Gaps = 21/132 (15%)
Query: 16 FHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQE 75
+ V+ VDD ++RL+K + T S ALE L +
Sbjct: 8 YTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEAL------------------KG 49
Query: 76 VGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSS-ENVPSRISRCLEEGAEEFF 134
V LVI+D MP M G L+++ + S DI V++S + + I F
Sbjct: 50 TSVQLVISDMRMPEMGGEVFLEQV--AKSYPDIERVVISGYADAQATIDAVNRGKISRFL 107
Query: 135 LKPVRLSDLNKL 146
LKP D+ K+
Sbjct: 108 LKPWEDEDVFKV 119
>pdb|3HX4|A Chain A, Crystal Structure Of Cdpk1 Of Toxoplasma Gondii,
Tgme49_101440, In Presence Of Calcium
Length = 508
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Query: 86 CMP--GMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDL 143
C P G YD+LKK+++ ++P SE+ I + L ++ +R+S
Sbjct: 248 CPPFNGANEYDILKKVEKGKYTFELPQWKKVSESAKDLIRKMLT------YVPSMRISAR 301
Query: 144 NKLKPHLMKTKIKDQI 159
+ L ++T K+QI
Sbjct: 302 DALDHEWIQTYTKEQI 317
>pdb|3KU2|A Chain A, Crystal Structure Of Inactivated Form Of Cdpk1 From
Toxoplasma Gondii, Tgme49.101440
Length = 507
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Query: 86 CMP--GMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDL 143
C P G YD+LKK+++ ++P SE+ I + L ++ +R+S
Sbjct: 247 CPPFNGANEYDILKKVEKGKYTFELPQWKKVSESAKDLIRKMLT------YVPSMRISAR 300
Query: 144 NKLKPHLMKTKIKDQI 159
+ L ++T K+QI
Sbjct: 301 DALDHEWIQTYTKEQI 316
>pdb|3I79|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1)
pdb|3I7B|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor Nm-Pp1
pdb|3N51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor
Rm-1-95
pdb|3SX9|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-132
pdb|3SXF|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-89
pdb|3T3U|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-130
pdb|3T3V|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-87
pdb|3UPX|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1300
pdb|3UPZ|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumpless Bki Analog Uw1243
pdb|3V51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Rm-1-176
pdb|3V5P|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1288
pdb|3V5T|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1299
Length = 484
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Query: 86 CMP--GMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDL 143
C P G YD+LKK+++ ++P SE+ I + L ++ +R+S
Sbjct: 224 CPPFNGANEYDILKKVEKGKYTFELPQWKKVSESAKDLIRKMLT------YVPSMRISAR 277
Query: 144 NKLKPHLMKTKIKDQI 159
+ L ++T K+QI
Sbjct: 278 DALDHEWIQTYTKEQI 293
>pdb|3CWO|X Chain X, A BetaALPHA-Barrel Built By The Combination Of Fragments
From Different Folds
Length = 237
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/63 (22%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 73 HQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEE 132
++E+ ++V D MP M G D +K+I + + +++ S+ + + ++ GA++
Sbjct: 21 YKELKPDIVTMDITMPEMNGIDAIKEIMKIDP--NAKIIVCSAMGQQAMVIEAIKAGAKD 78
Query: 133 FFL 135
F +
Sbjct: 79 FIV 81
>pdb|1D5W|A Chain A, Phosphorylated Fixj Receiver Domain
pdb|1D5W|B Chain B, Phosphorylated Fixj Receiver Domain
pdb|1D5W|C Chain C, Phosphorylated Fixj Receiver Domain
Length = 126
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIP-VVIMSSENVPSRISRCLEEGAEEFFLKP 137
+++T MP M+G +LL+ + + +IP +VI +VP + ++ GA +F KP
Sbjct: 49 GVLVTXLRMPDMSGVELLRNLGDLKI--NIPSIVITGHGDVPMAV-EAMKAGAVDFIEKP 105
>pdb|3A0U|A Chain A, Crystal Structure Of Response Regulator Protein Trra
(Tm1360) From Thermotoga Maritima In Complex With
Mg(2+)- Bef (Wild Type)
Length = 116
Score = 26.9 bits (58), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 63/130 (48%), Gaps = 28/130 (21%)
Query: 17 HVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALE--FLGLHEDDGQSSHSVYPNMHQ 74
+L VDD R+L++ L+ Y++ T ++G +AL+ F G +
Sbjct: 3 RILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFSGNY---------------- 46
Query: 75 EVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSS-ENVPSRISRCLEEGAEEF 133
+LVI D MPG++G ++ +I++ +D ++++++ + S +S A+E+
Sbjct: 47 ----DLVILDIEMPGISGLEVAGEIRKKK--KDAKIILLTAYSHYRSDLSSW---AADEY 97
Query: 134 FLKPVRLSDL 143
+K +L
Sbjct: 98 VVKSFNFDEL 107
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,892,513
Number of Sequences: 62578
Number of extensions: 161614
Number of successful extensions: 656
Number of sequences better than 100.0: 162
Number of HSP's better than 100.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 490
Number of HSP's gapped (non-prelim): 164
length of query: 241
length of database: 14,973,337
effective HSP length: 96
effective length of query: 145
effective length of database: 8,965,849
effective search space: 1300048105
effective search space used: 1300048105
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 50 (23.9 bits)