Query 026239
Match_columns 241
No_of_seqs 494 out of 1718
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 05:25:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026239.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026239hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03029 type-a response regul 100.0 1.9E-38 4E-43 263.0 19.2 212 12-241 5-222 (222)
2 COG0745 OmpR Response regulato 99.9 7.1E-24 1.5E-28 176.0 15.0 119 16-154 1-119 (229)
3 COG4566 TtrR Response regulato 99.9 5.7E-22 1.2E-26 155.4 16.0 119 15-153 4-122 (202)
4 COG4753 Response regulator con 99.9 3.9E-22 8.5E-27 178.0 15.0 121 15-155 1-124 (475)
5 COG2204 AtoC Response regulato 99.9 5.3E-22 1.1E-26 177.5 15.0 120 15-154 4-123 (464)
6 COG4565 CitB Response regulato 99.9 9.4E-21 2E-25 151.3 15.6 121 16-156 1-123 (224)
7 PF00072 Response_reg: Respons 99.9 1.5E-20 3.3E-25 138.2 13.9 110 18-147 1-111 (112)
8 COG3437 Response regulator con 99.9 1.7E-20 3.7E-25 160.4 15.6 118 12-147 11-129 (360)
9 COG2197 CitB Response regulato 99.8 2.3E-19 4.9E-24 147.6 14.4 119 16-154 1-121 (211)
10 COG0784 CheY FOG: CheY-like re 99.8 8E-18 1.7E-22 126.8 15.7 116 14-148 4-121 (130)
11 PRK10046 dpiA two-component re 99.8 5.7E-18 1.2E-22 140.4 16.2 120 14-153 3-124 (225)
12 COG3706 PleD Response regulato 99.8 8.1E-18 1.7E-22 149.6 16.9 114 14-145 131-244 (435)
13 KOG0519 Sensory transduction h 99.8 2E-18 4.4E-23 165.7 13.2 119 14-150 665-783 (786)
14 COG4567 Response regulator con 99.8 1.1E-17 2.4E-22 126.5 12.8 111 16-146 10-120 (182)
15 COG3947 Response regulator con 99.8 4.1E-18 8.9E-23 141.8 10.0 117 16-154 1-117 (361)
16 PRK10816 DNA-binding transcrip 99.7 5.2E-17 1.1E-21 133.4 15.6 117 16-152 1-117 (223)
17 PRK10529 DNA-binding transcrip 99.7 7E-17 1.5E-21 132.7 15.9 116 16-152 2-117 (225)
18 PRK09836 DNA-binding transcrip 99.7 8.3E-17 1.8E-21 132.5 15.7 117 16-152 1-117 (227)
19 PRK10643 DNA-binding transcrip 99.7 1.2E-16 2.6E-21 130.5 15.9 117 16-152 1-117 (222)
20 PRK10161 transcriptional regul 99.7 1.2E-16 2.7E-21 131.6 15.8 119 16-152 3-121 (229)
21 PRK10430 DNA-binding transcrip 99.7 1.2E-16 2.6E-21 133.6 15.9 119 15-151 1-121 (239)
22 PRK11173 two-component respons 99.7 1.1E-16 2.5E-21 132.9 15.5 118 15-153 3-120 (237)
23 TIGR02154 PhoB phosphate regul 99.7 1.5E-16 3.3E-21 130.1 15.5 120 16-153 3-122 (226)
24 PRK09468 ompR osmolarity respo 99.7 1.5E-16 3.3E-21 132.1 15.4 119 14-152 4-122 (239)
25 PRK10336 DNA-binding transcrip 99.7 1.9E-16 4.2E-21 129.1 15.4 117 16-152 1-117 (219)
26 PRK10766 DNA-binding transcrip 99.7 2.8E-16 6.1E-21 128.7 15.9 116 16-152 3-118 (221)
27 PRK10841 hybrid sensory kinase 99.7 1.4E-16 3E-21 156.2 16.1 118 14-151 800-917 (924)
28 PRK11107 hybrid sensory histid 99.7 1.3E-16 2.7E-21 156.4 15.6 120 14-151 666-785 (919)
29 TIGR03787 marine_sort_RR prote 99.7 4.1E-16 8.9E-21 128.2 15.8 117 17-153 2-120 (227)
30 PRK10701 DNA-binding transcrip 99.7 3.9E-16 8.4E-21 129.8 15.6 116 16-152 2-117 (240)
31 CHL00148 orf27 Ycf27; Reviewed 99.7 4.8E-16 1E-20 128.7 15.9 119 13-152 4-122 (240)
32 PRK11083 DNA-binding response 99.7 3.9E-16 8.5E-21 127.9 15.1 118 15-152 3-120 (228)
33 PRK10840 transcriptional regul 99.7 3.2E-16 7E-21 128.9 14.4 119 15-153 3-126 (216)
34 PRK13856 two-component respons 99.7 5.2E-16 1.1E-20 129.4 15.8 116 16-152 2-118 (241)
35 PRK10955 DNA-binding transcrip 99.7 5.3E-16 1.1E-20 127.8 15.6 115 16-152 2-116 (232)
36 PRK11466 hybrid sensory histid 99.7 2.1E-16 4.5E-21 155.0 15.3 120 14-152 680-799 (914)
37 PRK11517 transcriptional regul 99.7 5.6E-16 1.2E-20 126.9 15.4 115 16-151 1-115 (223)
38 PRK09581 pleD response regulat 99.7 5.3E-16 1.1E-20 140.1 16.0 119 14-151 154-272 (457)
39 PRK15347 two component system 99.7 3.8E-16 8.2E-21 153.1 15.5 119 15-151 690-810 (921)
40 PRK09958 DNA-binding transcrip 99.7 7.7E-16 1.7E-20 124.5 14.7 118 16-153 1-119 (204)
41 TIGR02875 spore_0_A sporulatio 99.7 9.6E-16 2.1E-20 129.7 15.6 119 15-151 2-122 (262)
42 PRK15115 response regulator Gl 99.7 8.5E-16 1.8E-20 139.6 16.0 119 14-152 4-122 (444)
43 PRK10365 transcriptional regul 99.7 1.1E-15 2.3E-20 138.6 16.6 120 13-152 3-122 (441)
44 PRK09483 response regulator; P 99.7 1.3E-15 2.8E-20 124.3 15.4 119 15-153 1-121 (217)
45 TIGR02956 TMAO_torS TMAO reduc 99.7 6.2E-16 1.3E-20 152.5 15.4 120 15-152 702-822 (968)
46 TIGR01387 cztR_silR_copR heavy 99.7 1.5E-15 3.2E-20 123.7 14.6 115 18-152 1-115 (218)
47 PRK10923 glnG nitrogen regulat 99.7 2.4E-15 5.1E-20 137.6 16.9 119 15-153 3-121 (469)
48 PRK11091 aerobic respiration c 99.7 1.1E-15 2.4E-20 147.7 15.0 119 14-151 524-643 (779)
49 PRK11361 acetoacetate metaboli 99.7 2.1E-15 4.5E-20 137.4 15.8 117 15-151 4-120 (457)
50 PRK14084 two-component respons 99.7 4.2E-15 9E-20 124.4 15.0 114 16-151 1-116 (246)
51 PRK10360 DNA-binding transcrip 99.6 4.5E-15 9.8E-20 119.2 14.4 116 15-153 1-118 (196)
52 PRK09935 transcriptional regul 99.6 7.6E-15 1.6E-19 118.8 14.9 119 15-153 3-123 (210)
53 TIGR01818 ntrC nitrogen regula 99.6 6.6E-15 1.4E-19 134.4 16.0 115 18-152 1-115 (463)
54 TIGR02915 PEP_resp_reg putativ 99.6 7.6E-15 1.6E-19 133.4 16.1 113 18-152 1-118 (445)
55 PRK15479 transcriptional regul 99.6 1.6E-14 3.5E-19 117.8 15.9 117 16-152 1-117 (221)
56 PRK11697 putative two-componen 99.6 9.2E-15 2E-19 121.6 14.4 114 15-151 1-116 (238)
57 PRK09390 fixJ response regulat 99.6 1.9E-14 4.2E-19 115.0 15.7 119 14-152 2-120 (202)
58 PRK09581 pleD response regulat 99.6 2E-14 4.4E-19 129.8 17.6 120 16-153 3-122 (457)
59 PRK09959 hybrid sensory histid 99.6 6E-15 1.3E-19 148.5 15.6 117 14-150 957-1073(1197)
60 PRK10710 DNA-binding transcrip 99.6 2E-14 4.3E-19 118.9 15.8 117 15-152 10-126 (240)
61 PRK12555 chemotaxis-specific m 99.6 1.7E-14 3.7E-19 126.7 14.7 102 16-138 1-106 (337)
62 PRK10610 chemotaxis regulatory 99.6 9.2E-14 2E-18 102.0 16.1 120 14-151 4-124 (129)
63 COG2201 CheB Chemotaxis respon 99.6 1.2E-14 2.5E-19 125.9 12.4 104 15-139 1-108 (350)
64 PRK10100 DNA-binding transcrip 99.6 1.7E-14 3.6E-19 119.0 12.5 117 13-154 8-128 (216)
65 PRK10403 transcriptional regul 99.6 9.3E-14 2E-18 112.4 15.2 119 14-152 5-125 (215)
66 PRK13558 bacterio-opsin activa 99.6 3.3E-14 7.2E-19 135.2 13.7 107 14-140 6-112 (665)
67 PRK10651 transcriptional regul 99.6 1.5E-13 3.2E-18 111.4 15.5 121 13-153 4-126 (216)
68 PRK11475 DNA-binding transcrip 99.6 4.7E-14 1E-18 115.6 12.1 107 27-153 2-115 (207)
69 PRK13435 response regulator; P 99.6 1.2E-13 2.7E-18 106.2 13.3 113 15-151 5-119 (145)
70 PRK00742 chemotaxis-specific m 99.5 1.5E-13 3.2E-18 121.5 14.8 104 15-139 3-110 (354)
71 PRK15369 two component system 99.5 4.3E-13 9.3E-18 107.7 15.5 118 15-152 3-122 (211)
72 PRK15411 rcsA colanic acid cap 99.5 2.8E-13 6.1E-18 111.1 13.5 117 16-153 1-123 (207)
73 COG3707 AmiR Response regulato 99.5 8.5E-13 1.9E-17 104.5 13.2 116 14-150 4-120 (194)
74 PRK13837 two-component VirA-li 99.5 1.1E-12 2.4E-17 127.8 14.8 116 15-151 697-812 (828)
75 PRK09191 two-component respons 99.4 2.9E-12 6.3E-17 107.9 14.9 114 15-151 137-252 (261)
76 cd00156 REC Signal receiver do 99.4 8.7E-12 1.9E-16 87.7 13.0 110 19-148 1-110 (113)
77 PRK10693 response regulator of 99.4 6.6E-12 1.4E-16 108.8 12.3 88 44-151 2-90 (303)
78 PRK13557 histidine kinase; Pro 99.4 1.3E-11 2.9E-16 113.7 14.3 118 15-151 415-533 (540)
79 PRK15029 arginine decarboxylas 99.3 2.1E-11 4.7E-16 116.0 13.0 108 16-143 1-122 (755)
80 COG3279 LytT Response regulato 99.2 2.1E-10 4.6E-15 96.3 11.5 117 15-153 1-119 (244)
81 PRK11107 hybrid sensory histid 98.7 2.7E-07 5.9E-12 90.8 13.4 112 14-147 535-646 (919)
82 COG3706 PleD Response regulato 98.5 2.5E-07 5.5E-12 83.0 5.8 90 40-151 13-102 (435)
83 PF06490 FleQ: Flagellar regul 98.1 2.9E-05 6.3E-10 57.1 9.7 106 17-149 1-106 (109)
84 smart00448 REC cheY-homologous 97.8 0.00016 3.5E-09 43.1 7.7 55 16-88 1-55 (55)
85 cd02071 MM_CoA_mut_B12_BD meth 97.7 0.0017 3.7E-08 48.6 12.3 104 22-145 10-118 (122)
86 PF03709 OKR_DC_1_N: Orn/Lys/A 97.6 0.00049 1.1E-08 51.0 7.9 95 29-143 7-103 (115)
87 PRK02261 methylaspartate mutas 97.3 0.01 2.2E-07 45.4 12.9 115 15-148 3-131 (137)
88 TIGR00640 acid_CoA_mut_C methy 97.3 0.0096 2.1E-07 45.2 11.9 106 22-147 13-123 (132)
89 cd02067 B12-binding B12 bindin 97.1 0.011 2.3E-07 43.8 10.5 96 22-137 10-110 (119)
90 TIGR01501 MthylAspMutase methy 96.6 0.07 1.5E-06 40.6 11.7 107 24-150 14-131 (134)
91 PRK15399 lysine decarboxylase 96.5 0.04 8.6E-07 53.0 12.1 102 16-139 1-108 (713)
92 PRK10618 phosphotransfer inter 96.4 0.004 8.6E-08 61.7 4.9 50 14-87 688-737 (894)
93 PRK15400 lysine decarboxylase 96.4 0.045 9.8E-07 52.7 11.7 100 16-137 1-106 (714)
94 cd02070 corrinoid_protein_B12- 96.3 0.078 1.7E-06 43.2 11.2 101 15-136 82-191 (201)
95 TIGR03815 CpaE_hom_Actino heli 96.1 0.027 6E-07 49.1 7.8 64 79-150 21-85 (322)
96 COG2185 Sbm Methylmalonyl-CoA 95.9 0.33 7.3E-06 37.2 12.0 110 14-143 11-129 (143)
97 cd02069 methionine_synthase_B1 95.8 0.12 2.6E-06 42.5 10.0 104 14-137 87-202 (213)
98 cd04728 ThiG Thiazole synthase 95.7 0.1 2.2E-06 43.5 9.1 40 93-135 164-203 (248)
99 cd02072 Glm_B12_BD B12 binding 95.6 0.38 8.3E-06 36.3 11.3 102 24-145 12-124 (128)
100 COG4999 Uncharacterized domain 95.0 0.15 3.3E-06 37.6 7.2 103 14-143 10-117 (140)
101 TIGR02370 pyl_corrinoid methyl 95.0 0.27 5.9E-06 39.9 9.5 100 15-135 84-192 (197)
102 PF02310 B12-binding: B12 bind 94.9 0.39 8.4E-06 35.2 9.5 92 24-136 13-111 (121)
103 PRK00208 thiG thiazole synthas 94.9 0.35 7.6E-06 40.5 9.9 48 93-143 164-216 (250)
104 PRK09426 methylmalonyl-CoA mut 93.7 1.1 2.3E-05 43.6 11.9 112 14-145 581-701 (714)
105 PF05690 ThiG: Thiazole biosyn 93.7 0.66 1.4E-05 38.6 8.9 108 15-145 93-218 (247)
106 PF07688 KaiA: KaiA domain; I 93.6 0.89 1.9E-05 38.2 9.6 79 17-116 2-80 (283)
107 PRK01130 N-acetylmannosamine-6 93.5 1.1 2.4E-05 36.8 10.3 43 91-136 160-202 (221)
108 PF01408 GFO_IDH_MocA: Oxidore 93.1 1.5 3.4E-05 31.8 9.6 36 116-151 73-110 (120)
109 PRK00043 thiE thiamine-phospha 93.0 2.8 6E-05 33.9 11.9 56 77-135 124-187 (212)
110 CHL00162 thiG thiamin biosynth 93.0 4 8.7E-05 34.4 12.6 110 16-149 108-236 (267)
111 COG2022 ThiG Uncharacterized e 92.9 1.1 2.3E-05 37.2 9.0 54 80-136 153-211 (262)
112 PF10087 DUF2325: Uncharacteri 92.6 1.6 3.6E-05 30.9 8.9 29 17-45 1-29 (97)
113 PRK10558 alpha-dehydro-beta-de 92.0 2.2 4.7E-05 36.2 10.2 71 77-148 40-111 (256)
114 TIGR03239 GarL 2-dehydro-3-deo 91.2 3.1 6.7E-05 35.1 10.3 70 77-147 33-103 (249)
115 PF02254 TrkA_N: TrkA-N domain 91.2 2.8 6E-05 30.3 9.0 94 14-134 20-114 (116)
116 PRK10128 2-keto-3-deoxy-L-rham 91.1 3.1 6.8E-05 35.4 10.3 72 77-149 39-111 (267)
117 TIGR00693 thiE thiamine-phosph 91.1 2.5 5.5E-05 33.8 9.4 55 77-134 116-178 (196)
118 PRK08385 nicotinate-nucleotide 91.0 2.2 4.9E-05 36.5 9.3 94 18-133 157-256 (278)
119 TIGR03151 enACPred_II putative 90.7 2.5 5.4E-05 36.8 9.5 84 31-136 101-190 (307)
120 cd00331 IGPS Indole-3-glycerol 90.7 6.6 0.00014 32.0 11.7 80 36-135 118-200 (217)
121 cd04729 NanE N-acetylmannosami 90.5 4.2 9E-05 33.3 10.3 43 91-136 164-206 (219)
122 PRK03958 tRNA 2'-O-methylase; 90.4 6.1 0.00013 31.4 10.5 87 15-123 31-120 (176)
123 TIGR00262 trpA tryptophan synt 90.2 1 2.2E-05 38.2 6.5 59 91-151 73-137 (256)
124 KOG4175 Tryptophan synthase al 90.1 0.87 1.9E-05 36.9 5.6 47 107-153 95-147 (268)
125 cd04724 Tryptophan_synthase_al 89.9 1.2 2.6E-05 37.3 6.7 59 91-152 63-127 (242)
126 COG0512 PabA Anthranilate/para 89.9 1.7 3.6E-05 35.0 7.1 78 15-115 1-82 (191)
127 TIGR02311 HpaI 2,4-dihydroxyhe 89.8 4.9 0.00011 33.8 10.3 73 77-150 33-106 (249)
128 PRK13111 trpA tryptophan synth 89.6 1.2 2.6E-05 37.8 6.4 59 91-151 75-139 (258)
129 PRK00278 trpC indole-3-glycero 89.5 10 0.00022 32.2 12.0 88 27-135 148-239 (260)
130 PLN02591 tryptophan synthase 89.2 1.2 2.6E-05 37.6 6.2 58 91-151 65-128 (250)
131 PRK05749 3-deoxy-D-manno-octul 89.2 10 0.00022 34.2 12.6 67 79-152 321-387 (425)
132 cd04723 HisA_HisF Phosphoribos 89.1 1.9 4.2E-05 35.8 7.3 53 80-135 162-217 (233)
133 cd00452 KDPG_aldolase KDPG and 88.8 3.5 7.6E-05 33.0 8.4 69 44-136 103-171 (190)
134 cd00564 TMP_TenI Thiamine mono 88.7 5.6 0.00012 31.3 9.6 55 77-135 115-177 (196)
135 PRK12704 phosphodiesterase; Pr 88.4 1.8 4E-05 40.4 7.4 43 109-151 251-295 (520)
136 TIGR00007 phosphoribosylformim 88.4 6.2 0.00013 32.5 9.9 53 80-135 162-217 (230)
137 TIGR02026 BchE magnesium-proto 88.2 7.2 0.00016 36.3 11.1 107 24-151 21-136 (497)
138 cd02068 radical_SAM_B12_BD B12 88.1 6.1 0.00013 29.2 8.9 103 28-150 5-110 (127)
139 PF01596 Methyltransf_3: O-met 88.1 4.3 9.3E-05 33.2 8.5 71 14-100 69-142 (205)
140 PRK13125 trpA tryptophan synth 88.1 7.1 0.00015 32.7 10.1 55 80-137 155-215 (244)
141 PF01729 QRPTase_C: Quinolinat 88.0 0.85 1.8E-05 36.1 4.2 68 43-133 85-152 (169)
142 PRK11840 bifunctional sulfur c 87.9 5.8 0.00013 34.7 9.6 51 92-145 237-292 (326)
143 cd04727 pdxS PdxS is a subunit 87.6 5.8 0.00013 33.9 9.2 42 91-135 181-224 (283)
144 PF02581 TMP-TENI: Thiamine mo 87.4 6.3 0.00014 31.2 9.0 80 32-134 89-175 (180)
145 PRK05718 keto-hydroxyglutarate 87.3 7.9 0.00017 31.8 9.7 90 33-143 10-100 (212)
146 cd04730 NPD_like 2-Nitropropan 87.1 12 0.00027 30.7 11.0 56 78-136 123-185 (236)
147 CHL00200 trpA tryptophan synth 86.4 2.2 4.7E-05 36.3 6.1 58 91-151 78-141 (263)
148 PRK06774 para-aminobenzoate sy 86.4 1.4 3.1E-05 35.3 4.8 31 18-48 2-32 (191)
149 PRK05567 inosine 5'-monophosph 86.4 12 0.00026 34.7 11.5 104 12-135 237-359 (486)
150 PRK03659 glutathione-regulated 86.1 7.7 0.00017 37.0 10.3 117 16-138 401-520 (601)
151 PRK05458 guanosine 5'-monophos 85.8 20 0.00043 31.6 11.9 97 17-135 113-229 (326)
152 PRK07428 nicotinate-nucleotide 85.5 4.3 9.2E-05 35.0 7.5 93 18-133 169-268 (288)
153 PLN02591 tryptophan synthase 85.3 20 0.00044 30.2 11.4 101 17-137 109-219 (250)
154 PRK13587 1-(5-phosphoribosyl)- 85.2 4.6 0.0001 33.6 7.4 54 79-135 164-220 (234)
155 TIGR00343 pyridoxal 5'-phospha 85.0 2.9 6.3E-05 35.8 6.1 52 91-145 184-242 (287)
156 PLN02775 Probable dihydrodipic 84.9 24 0.00053 30.4 11.7 106 13-141 9-139 (286)
157 PLN02274 inosine-5'-monophosph 84.7 17 0.00036 34.0 11.5 43 90-135 337-379 (505)
158 PRK06543 nicotinate-nucleotide 84.4 10 0.00022 32.6 9.2 91 17-133 161-262 (281)
159 KOG2335 tRNA-dihydrouridine sy 84.3 8.9 0.00019 33.9 8.9 106 13-135 115-232 (358)
160 PF03060 NMO: Nitronate monoox 84.1 7.8 0.00017 34.0 8.7 82 32-135 129-218 (330)
161 TIGR00566 trpG_papA glutamine 83.8 3.6 7.7E-05 33.0 6.0 30 18-47 2-31 (188)
162 cd02065 B12-binding_like B12 b 83.6 10 0.00022 27.5 8.1 74 22-114 10-87 (125)
163 PF04131 NanE: Putative N-acet 83.6 9.4 0.0002 30.8 8.1 100 14-136 63-173 (192)
164 TIGR01037 pyrD_sub1_fam dihydr 83.5 20 0.00044 30.7 11.0 38 93-133 223-260 (300)
165 PRK06849 hypothetical protein; 83.3 16 0.00035 32.6 10.6 39 14-52 3-41 (389)
166 TIGR00736 nifR3_rel_arch TIM-b 83.3 4.4 9.6E-05 33.8 6.5 58 75-134 159-218 (231)
167 PRK07695 transcriptional regul 83.1 18 0.00038 29.1 9.9 53 77-133 115-174 (201)
168 PRK03562 glutathione-regulated 83.0 20 0.00044 34.4 11.7 54 77-135 464-517 (621)
169 PRK04180 pyridoxal biosynthesi 83.0 4.7 0.0001 34.7 6.5 52 91-145 190-248 (293)
170 KOG1601 GATA-4/5/6 transcripti 83.0 0.19 4.2E-06 42.3 -1.8 75 76-150 62-136 (340)
171 PRK06843 inosine 5-monophospha 82.7 19 0.0004 32.7 10.6 29 107-135 256-284 (404)
172 cd05014 SIS_Kpsf KpsF-like pro 82.6 7.7 0.00017 28.4 7.1 92 21-138 8-100 (128)
173 PRK06552 keto-hydroxyglutarate 82.6 16 0.00034 30.1 9.4 62 80-144 39-102 (213)
174 cd04732 HisA HisA. Phosphorib 82.4 6.8 0.00015 32.2 7.4 53 80-135 163-218 (234)
175 PRK05637 anthranilate synthase 82.3 6.4 0.00014 32.2 7.0 33 16-48 2-34 (208)
176 PRK07649 para-aminobenzoate/an 82.3 2.3 5.1E-05 34.3 4.4 31 18-48 2-32 (195)
177 PRK04302 triosephosphate isome 82.2 26 0.00057 28.7 11.3 43 93-137 161-203 (223)
178 TIGR01182 eda Entner-Doudoroff 82.1 12 0.00026 30.6 8.4 52 88-143 42-93 (204)
179 PRK06559 nicotinate-nucleotide 81.9 7.3 0.00016 33.6 7.4 91 17-133 169-266 (290)
180 COG0313 Predicted methyltransf 81.8 8.6 0.00019 32.8 7.7 94 15-129 30-126 (275)
181 PF03602 Cons_hypoth95: Conser 81.8 14 0.00031 29.5 8.7 86 12-113 62-151 (183)
182 cd05013 SIS_RpiR RpiR-like pro 81.8 18 0.00038 26.4 10.4 85 16-120 14-100 (139)
183 PTZ00314 inosine-5'-monophosph 81.8 15 0.00033 34.2 10.0 29 107-135 344-372 (495)
184 PLN02335 anthranilate synthase 81.7 4.2 9.2E-05 33.6 5.8 34 14-47 17-50 (222)
185 PRK00748 1-(5-phosphoribosyl)- 81.6 7.3 0.00016 32.0 7.2 53 80-135 163-219 (233)
186 COG0159 TrpA Tryptophan syntha 81.2 5.4 0.00012 33.9 6.3 57 91-149 80-142 (265)
187 PRK05670 anthranilate synthase 81.2 4.3 9.4E-05 32.4 5.6 30 18-47 2-31 (189)
188 COG4122 Predicted O-methyltran 81.2 9.6 0.00021 31.5 7.6 59 15-89 84-144 (219)
189 PRK07896 nicotinate-nucleotide 81.1 9 0.0002 33.1 7.7 69 42-133 203-271 (289)
190 PRK09140 2-dehydro-3-deoxy-6-p 80.8 17 0.00036 29.7 8.9 59 82-144 38-97 (206)
191 TIGR03088 stp2 sugar transfera 80.8 24 0.00053 30.7 10.8 64 79-152 274-337 (374)
192 PRK09490 metH B12-dependent me 80.8 12 0.00027 38.7 9.7 103 15-137 751-865 (1229)
193 COG0352 ThiE Thiamine monophos 80.7 21 0.00046 29.3 9.5 52 78-133 125-183 (211)
194 COG0157 NadC Nicotinate-nucleo 80.6 22 0.00048 30.4 9.7 92 18-133 161-259 (280)
195 TIGR00262 trpA tryptophan synt 80.6 18 0.0004 30.5 9.4 43 92-137 186-228 (256)
196 COG3836 HpcH 2,4-dihydroxyhept 80.5 6.8 0.00015 32.7 6.4 64 77-141 38-101 (255)
197 TIGR01334 modD putative molybd 80.4 12 0.00026 32.1 8.2 68 43-133 193-260 (277)
198 PRK08007 para-aminobenzoate sy 80.4 3.4 7.4E-05 33.1 4.7 31 18-48 2-32 (187)
199 PRK04128 1-(5-phosphoribosyl)- 80.4 6.9 0.00015 32.5 6.6 51 80-135 159-210 (228)
200 PLN02871 UDP-sulfoquinovose:DA 80.3 47 0.001 30.3 13.1 64 79-152 333-399 (465)
201 PRK15482 transcriptional regul 80.1 29 0.00064 29.5 10.7 87 15-122 137-224 (285)
202 TIGR02082 metH 5-methyltetrahy 80.0 17 0.00038 37.5 10.5 104 15-138 732-847 (1178)
203 PRK15320 transcriptional activ 80.0 9.2 0.0002 31.2 6.8 100 16-137 2-103 (251)
204 PRK11557 putative DNA-binding 79.8 25 0.00054 29.7 10.1 83 16-121 131-216 (278)
205 PLN02476 O-methyltransferase 79.7 33 0.00072 29.4 10.7 58 15-86 143-203 (278)
206 PF00290 Trp_syntA: Tryptophan 79.7 3.3 7.1E-05 35.2 4.5 56 91-148 73-134 (259)
207 PRK06978 nicotinate-nucleotide 79.5 6.5 0.00014 34.0 6.3 90 17-132 178-273 (294)
208 PRK06843 inosine 5-monophospha 79.4 6.1 0.00013 35.8 6.4 56 76-134 164-220 (404)
209 PLN02589 caffeoyl-CoA O-methyl 79.4 33 0.00071 28.9 10.5 60 14-86 103-165 (247)
210 PRK10669 putative cation:proto 79.2 17 0.00037 34.3 9.7 113 16-134 418-533 (558)
211 PLN02274 inosine-5'-monophosph 79.2 20 0.00044 33.5 10.0 55 76-134 259-315 (505)
212 TIGR01579 MiaB-like-C MiaB-lik 79.0 14 0.0003 33.4 8.7 69 77-148 33-105 (414)
213 cd01948 EAL EAL domain. This d 78.8 6.9 0.00015 31.8 6.2 91 31-140 137-238 (240)
214 COG2200 Rtn c-di-GMP phosphodi 78.8 9.4 0.0002 32.2 7.1 98 31-147 141-249 (256)
215 PF00977 His_biosynth: Histidi 78.7 8.2 0.00018 32.0 6.6 53 80-135 164-219 (229)
216 cd01573 modD_like ModD; Quinol 78.7 11 0.00024 32.1 7.6 69 43-134 188-256 (272)
217 COG0626 MetC Cystathionine bet 78.7 14 0.0003 33.5 8.4 110 2-133 87-204 (396)
218 PRK05458 guanosine 5'-monophos 78.6 5.1 0.00011 35.2 5.5 54 78-134 112-166 (326)
219 TIGR01303 IMP_DH_rel_1 IMP deh 78.6 26 0.00056 32.5 10.4 55 76-133 236-291 (475)
220 PRK09016 quinolinate phosphori 78.2 9.2 0.0002 33.1 6.9 66 42-133 212-277 (296)
221 cd04731 HisF The cyclase subun 78.2 13 0.00028 30.9 7.7 71 45-135 26-99 (243)
222 PRK06015 keto-hydroxyglutarate 77.7 17 0.00037 29.6 8.0 56 84-143 34-89 (201)
223 PF07652 Flavi_DEAD: Flaviviru 77.5 11 0.00024 29.1 6.4 89 14-116 32-135 (148)
224 PF03328 HpcH_HpaI: HpcH/HpaI 77.4 33 0.00073 28.0 9.9 73 77-150 21-106 (221)
225 PRK05848 nicotinate-nucleotide 77.4 43 0.00092 28.7 10.7 93 18-133 155-254 (273)
226 PRK11889 flhF flagellar biosyn 77.4 37 0.0008 31.0 10.6 112 13-138 267-387 (436)
227 cd00381 IMPDH IMPDH: The catal 77.3 37 0.00079 29.8 10.6 29 107-135 197-225 (325)
228 cd04722 TIM_phosphate_binding 77.2 26 0.00057 27.1 9.0 56 76-134 135-197 (200)
229 TIGR00734 hisAF_rel hisA/hisF 77.2 7.9 0.00017 31.9 6.1 54 79-135 156-212 (221)
230 cd05212 NAD_bind_m-THF_DH_Cycl 77.2 13 0.00029 28.4 6.9 53 14-89 27-83 (140)
231 PRK05703 flhF flagellar biosyn 76.9 33 0.00072 31.3 10.5 105 14-135 250-364 (424)
232 PRK05581 ribulose-phosphate 3- 76.8 12 0.00026 30.4 7.0 59 78-136 132-198 (220)
233 PRK13585 1-(5-phosphoribosyl)- 76.8 23 0.00049 29.3 8.8 61 80-143 166-235 (241)
234 PF14097 SpoVAE: Stage V sporu 76.7 35 0.00077 27.0 9.0 83 18-116 3-94 (180)
235 PRK12724 flagellar biosynthesi 76.7 26 0.00057 32.0 9.6 101 15-135 252-366 (432)
236 COG3010 NanE Putative N-acetyl 76.1 27 0.00059 28.6 8.5 100 13-137 96-210 (229)
237 cd00331 IGPS Indole-3-glycerol 75.4 16 0.00034 29.8 7.4 66 80-148 48-115 (217)
238 CHL00200 trpA tryptophan synth 75.2 49 0.0011 28.1 10.5 43 93-138 191-233 (263)
239 TIGR01302 IMP_dehydrog inosine 74.9 39 0.00085 31.0 10.5 43 93-135 313-355 (450)
240 PRK11337 DNA-binding transcrip 74.5 46 0.00099 28.3 10.4 83 18-122 145-229 (292)
241 COG1927 Mtd Coenzyme F420-depe 74.5 29 0.00064 28.5 8.3 59 74-136 57-115 (277)
242 PRK01033 imidazole glycerol ph 74.5 17 0.00037 30.7 7.5 57 80-139 169-230 (258)
243 cd02809 alpha_hydroxyacid_oxid 74.2 43 0.00093 28.9 10.1 59 76-135 192-255 (299)
244 COG1737 RpiR Transcriptional r 74.1 48 0.001 28.3 10.3 86 16-122 133-219 (281)
245 PRK11359 cyclic-di-GMP phospho 74.1 22 0.00048 34.6 9.3 98 31-147 683-791 (799)
246 TIGR00735 hisF imidazoleglycer 73.9 40 0.00087 28.2 9.7 39 93-134 188-227 (254)
247 PRK04128 1-(5-phosphoribosyl)- 73.8 28 0.00061 28.8 8.5 53 80-135 46-101 (228)
248 TIGR01761 thiaz-red thiazoliny 73.5 41 0.00089 29.8 9.9 44 107-150 64-111 (343)
249 COG0421 SpeE Spermidine syntha 73.1 36 0.00079 29.2 9.2 69 16-103 101-180 (282)
250 PRK15484 lipopolysaccharide 1, 73.1 67 0.0014 28.4 14.1 66 79-153 278-344 (380)
251 TIGR00735 hisF imidazoleglycer 73.0 12 0.00026 31.4 6.3 72 45-136 29-103 (254)
252 TIGR01306 GMP_reduct_2 guanosi 73.0 65 0.0014 28.3 11.6 41 92-135 186-226 (321)
253 PRK06096 molybdenum transport 73.0 15 0.00033 31.6 6.8 68 43-133 194-261 (284)
254 PRK06895 putative anthranilate 72.8 15 0.00032 29.4 6.5 31 16-46 2-32 (190)
255 PLN02366 spermidine synthase 72.6 45 0.00097 29.1 9.8 28 76-103 164-196 (308)
256 PRK15490 Vi polysaccharide bio 72.4 80 0.0017 30.1 11.9 101 15-146 429-531 (578)
257 cd03813 GT1_like_3 This family 72.4 72 0.0016 29.3 11.7 65 78-152 371-441 (475)
258 TIGR03765 ICE_PFL_4695 integra 72.2 28 0.0006 25.2 6.9 71 17-115 26-101 (105)
259 smart00052 EAL Putative diguan 72.1 16 0.00034 29.7 6.7 91 31-140 138-239 (241)
260 PRK08072 nicotinate-nucleotide 72.0 44 0.00096 28.6 9.5 91 17-133 160-257 (277)
261 PF03808 Glyco_tran_WecB: Glyc 71.9 37 0.00081 26.6 8.5 80 13-115 46-134 (172)
262 PRK07455 keto-hydroxyglutarate 71.8 24 0.00052 28.2 7.5 53 77-133 125-177 (187)
263 cd04726 KGPDC_HPS 3-Keto-L-gul 71.8 49 0.0011 26.3 11.8 84 29-135 93-185 (202)
264 COG1411 Uncharacterized protei 71.6 19 0.0004 29.4 6.5 57 77-136 151-210 (229)
265 PF11072 DUF2859: Protein of u 71.5 34 0.00074 26.3 7.7 72 16-115 63-139 (142)
266 PRK02083 imidazole glycerol ph 71.4 20 0.00042 30.1 7.2 53 80-135 170-226 (253)
267 PRK13111 trpA tryptophan synth 71.2 63 0.0014 27.4 10.2 42 92-137 188-229 (258)
268 PRK07114 keto-hydroxyglutarate 70.8 44 0.00096 27.6 8.9 60 82-143 43-104 (222)
269 PRK06552 keto-hydroxyglutarate 70.8 26 0.00056 28.8 7.6 80 29-133 99-180 (213)
270 TIGR01859 fruc_bis_ald_ fructo 70.5 23 0.0005 30.4 7.5 39 92-133 188-227 (282)
271 PLN02781 Probable caffeoyl-CoA 70.5 34 0.00074 28.3 8.4 59 15-87 93-154 (234)
272 PRK12726 flagellar biosynthesi 70.2 66 0.0014 29.2 10.4 109 14-136 233-350 (407)
273 PRK00748 1-(5-phosphoribosyl)- 70.1 26 0.00057 28.7 7.6 73 45-137 29-104 (233)
274 CHL00101 trpG anthranilate syn 70.1 14 0.0003 29.6 5.7 31 18-48 2-32 (190)
275 PRK00536 speE spermidine synth 70.0 27 0.0006 29.6 7.7 83 13-99 71-160 (262)
276 COG0134 TrpC Indole-3-glycerol 69.9 64 0.0014 27.3 9.7 84 31-136 148-236 (254)
277 PRK00994 F420-dependent methyl 69.8 33 0.00072 28.7 7.8 60 75-138 58-117 (277)
278 COG5624 TAF61 Transcription in 69.8 7.8 0.00017 34.7 4.4 39 198-236 236-274 (505)
279 PRK12727 flagellar biosynthesi 69.6 58 0.0012 30.8 10.2 54 16-86 381-437 (559)
280 PRK02615 thiamine-phosphate py 69.6 47 0.001 29.5 9.3 54 77-134 260-320 (347)
281 PF03102 NeuB: NeuB family; I 69.5 24 0.00053 29.6 7.2 99 28-150 58-167 (241)
282 PRK13125 trpA tryptophan synth 69.5 16 0.00035 30.5 6.2 55 94-151 64-126 (244)
283 PRK13566 anthranilate synthase 69.5 23 0.00049 34.7 7.9 36 13-48 524-559 (720)
284 TIGR01302 IMP_dehydrog inosine 69.5 13 0.00029 34.1 6.1 56 75-133 234-290 (450)
285 PRK07764 DNA polymerase III su 69.3 16 0.00034 36.4 6.9 72 76-151 119-192 (824)
286 cd04736 MDH_FMN Mandelate dehy 69.3 33 0.00071 30.6 8.3 88 29-138 226-321 (361)
287 PRK11572 copper homeostasis pr 69.1 48 0.001 27.9 8.8 94 20-134 94-196 (248)
288 PRK08857 para-aminobenzoate sy 68.8 12 0.00026 30.0 5.1 29 18-46 2-30 (193)
289 TIGR00096 probable S-adenosylm 68.3 19 0.00041 30.9 6.4 94 15-129 25-120 (276)
290 PRK06106 nicotinate-nucleotide 68.3 34 0.00074 29.4 7.9 65 43-133 199-263 (281)
291 TIGR01163 rpe ribulose-phospha 68.1 13 0.00028 29.8 5.3 58 78-136 127-193 (210)
292 TIGR03572 WbuZ glycosyl amidat 68.1 32 0.00069 28.3 7.7 72 45-136 29-103 (232)
293 PRK07765 para-aminobenzoate sy 68.1 17 0.00036 29.8 5.9 32 16-47 1-32 (214)
294 PRK13170 hisH imidazole glycer 68.1 28 0.0006 28.0 7.2 35 16-50 1-35 (196)
295 PRK14098 glycogen synthase; Pr 68.0 37 0.0008 31.5 8.8 68 78-151 382-449 (489)
296 PRK06806 fructose-bisphosphate 68.0 34 0.00073 29.4 7.9 40 91-133 187-227 (281)
297 TIGR01684 viral_ppase viral ph 67.9 19 0.00041 31.2 6.3 54 77-134 125-189 (301)
298 COG0742 N6-adenine-specific me 67.8 63 0.0014 26.0 11.0 59 12-87 63-124 (187)
299 PRK10060 RNase II stability mo 67.7 34 0.00075 33.0 8.8 98 31-147 546-654 (663)
300 PRK10415 tRNA-dihydrouridine s 67.6 31 0.00068 30.1 7.9 41 91-134 181-222 (321)
301 PF10727 Rossmann-like: Rossma 67.3 30 0.00066 25.9 6.7 113 12-131 7-121 (127)
302 cd04737 LOX_like_FMN L-Lactate 67.1 55 0.0012 29.1 9.3 87 29-135 211-304 (351)
303 cd04962 GT1_like_5 This family 67.0 82 0.0018 27.0 12.3 64 79-152 272-335 (371)
304 PF00563 EAL: EAL domain; Int 66.9 5 0.00011 32.5 2.6 83 29-131 138-226 (236)
305 PLN02716 nicotinate-nucleotide 66.9 52 0.0011 28.7 8.9 99 18-132 173-286 (308)
306 COG2265 TrmA SAM-dependent met 66.9 51 0.0011 30.2 9.3 100 12-133 312-413 (432)
307 cd01836 FeeA_FeeB_like SGNH_hy 66.6 26 0.00056 27.4 6.7 39 76-116 66-115 (191)
308 TIGR00078 nadC nicotinate-nucl 66.6 32 0.0007 29.2 7.5 92 17-134 150-248 (265)
309 PRK14114 1-(5-phosphoribosyl)- 66.5 28 0.00061 29.1 7.1 54 79-135 160-222 (241)
310 PF01993 MTD: methylene-5,6,7, 66.4 7.7 0.00017 32.4 3.5 61 75-139 57-117 (276)
311 TIGR01304 IMP_DH_rel_2 IMP deh 66.2 59 0.0013 29.1 9.4 54 76-134 154-214 (369)
312 TIGR02085 meth_trns_rumB 23S r 66.1 85 0.0018 28.0 10.5 94 15-136 255-352 (374)
313 PLN02823 spermine synthase 66.1 56 0.0012 28.8 9.1 55 15-88 127-187 (336)
314 cd02940 DHPD_FMN Dihydropyrimi 66.1 60 0.0013 27.9 9.3 42 93-135 239-280 (299)
315 PF00290 Trp_syntA: Tryptophan 66.0 71 0.0015 27.1 9.4 99 17-138 118-228 (259)
316 COG2070 Dioxygenases related t 65.8 49 0.0011 29.2 8.7 56 76-133 146-210 (336)
317 cd01572 QPRTase Quinolinate ph 65.8 77 0.0017 27.0 9.7 91 17-133 154-251 (268)
318 cd00381 IMPDH IMPDH: The catal 65.8 20 0.00043 31.5 6.2 56 76-134 105-161 (325)
319 PRK02155 ppnK NAD(+)/NADH kina 65.6 66 0.0014 27.7 9.3 109 16-153 6-119 (291)
320 TIGR01305 GMP_reduct_1 guanosi 65.5 29 0.00064 30.6 7.1 56 77-135 121-177 (343)
321 cd06533 Glyco_transf_WecG_TagA 65.5 51 0.0011 25.9 8.0 79 14-115 45-132 (171)
322 cd03823 GT1_ExpE7_like This fa 65.4 82 0.0018 26.4 12.5 65 79-152 264-328 (359)
323 cd00405 PRAI Phosphoribosylant 65.3 50 0.0011 26.5 8.2 52 76-133 119-178 (203)
324 PF01113 DapB_N: Dihydrodipico 65.3 39 0.00085 24.9 7.0 41 78-124 68-108 (124)
325 PF13380 CoA_binding_2: CoA bi 65.2 23 0.0005 25.9 5.7 50 76-130 54-103 (116)
326 PF04131 NanE: Putative N-acet 65.1 27 0.00058 28.2 6.3 68 39-131 45-114 (192)
327 PRK01231 ppnK inorganic polyph 65.0 89 0.0019 27.0 10.0 109 16-153 5-118 (295)
328 PRK15427 colanic acid biosynth 64.9 1.1E+02 0.0023 27.6 11.9 108 15-152 253-369 (406)
329 PLN02819 lysine-ketoglutarate 64.9 94 0.002 31.9 11.4 110 13-147 567-689 (1042)
330 KOG1203 Predicted dehydrogenas 64.9 32 0.00069 31.3 7.4 73 13-103 77-150 (411)
331 PRK04457 spermidine synthase; 64.9 85 0.0018 26.5 11.3 71 14-103 89-167 (262)
332 COG5012 Predicted cobalamin bi 64.7 33 0.00072 28.4 6.8 90 26-137 119-214 (227)
333 PF01081 Aldolase: KDPG and KH 64.6 21 0.00045 29.0 5.7 57 83-143 37-93 (196)
334 PRK03522 rumB 23S rRNA methylu 64.6 40 0.00087 29.2 7.9 67 15-103 195-265 (315)
335 PF09936 Methyltrn_RNA_4: SAM- 64.6 32 0.00069 27.5 6.5 102 16-140 43-162 (185)
336 cd04731 HisF The cyclase subun 64.5 41 0.0009 27.8 7.8 41 92-135 181-222 (243)
337 COG0673 MviM Predicted dehydro 64.3 87 0.0019 26.9 10.1 45 107-151 69-115 (342)
338 PRK07107 inosine 5-monophospha 64.2 43 0.00093 31.3 8.4 29 107-135 352-380 (502)
339 PRK06731 flhF flagellar biosyn 63.5 94 0.002 26.5 10.2 107 15-135 103-218 (270)
340 cd08556 GDPD Glycerophosphodie 63.5 64 0.0014 25.0 8.4 50 78-135 138-187 (189)
341 PRK03708 ppnK inorganic polyph 63.4 77 0.0017 27.1 9.3 107 16-153 1-112 (277)
342 TIGR01306 GMP_reduct_2 guanosi 63.3 21 0.00045 31.4 5.8 55 78-135 109-164 (321)
343 TIGR03572 WbuZ glycosyl amidat 63.2 39 0.00084 27.8 7.3 40 93-135 186-226 (232)
344 TIGR00417 speE spermidine synt 63.2 92 0.002 26.3 9.9 27 76-102 144-175 (270)
345 cd01568 QPRTase_NadC Quinolina 63.2 42 0.00091 28.5 7.6 94 17-134 153-253 (269)
346 PF04321 RmlD_sub_bind: RmlD s 63.1 21 0.00045 30.5 5.8 46 16-61 1-53 (286)
347 cd06338 PBP1_ABC_ligand_bindin 62.8 99 0.0021 26.5 11.6 67 28-116 158-231 (345)
348 PTZ00314 inosine-5'-monophosph 62.6 23 0.00049 33.1 6.3 57 75-134 251-308 (495)
349 PRK14326 (dimethylallyl)adenos 62.6 79 0.0017 29.5 9.9 97 22-150 24-128 (502)
350 PRK13585 1-(5-phosphoribosyl)- 62.4 17 0.00036 30.1 5.0 54 80-136 49-105 (241)
351 cd06346 PBP1_ABC_ligand_bindin 62.4 97 0.0021 26.3 11.3 71 29-121 155-232 (312)
352 PRK00955 hypothetical protein; 62.2 40 0.00088 32.3 7.9 32 15-46 13-50 (620)
353 cd04732 HisA HisA. Phosphorib 62.2 52 0.0011 26.9 7.9 53 80-135 46-101 (234)
354 PRK13143 hisH imidazole glycer 62.0 20 0.00044 28.9 5.3 33 16-48 1-33 (200)
355 PF08415 NRPS: Nonribosomal pe 61.8 13 0.00029 23.5 3.4 29 89-117 3-33 (58)
356 cd01748 GATase1_IGP_Synthase T 61.7 31 0.00068 27.6 6.3 32 18-49 1-32 (198)
357 PRK06512 thiamine-phosphate py 61.6 14 0.00031 30.4 4.4 53 77-133 131-189 (221)
358 cd03825 GT1_wcfI_like This fam 61.6 38 0.00081 28.9 7.3 75 16-113 1-82 (365)
359 cd02810 DHOD_DHPD_FMN Dihydroo 61.5 72 0.0016 27.1 8.9 40 93-133 230-269 (289)
360 PRK04169 geranylgeranylglycery 61.5 38 0.00082 28.3 6.8 61 78-141 155-218 (232)
361 cd03332 LMO_FMN L-Lactate 2-mo 61.4 69 0.0015 28.9 8.9 90 29-138 243-340 (383)
362 PF01380 SIS: SIS domain SIS d 61.3 17 0.00036 26.5 4.4 101 17-142 7-110 (131)
363 cd04724 Tryptophan_synthase_al 61.2 92 0.002 25.9 9.2 42 92-137 175-216 (242)
364 cd03819 GT1_WavL_like This fam 61.2 1E+02 0.0022 26.2 13.0 63 78-149 264-326 (355)
365 PRK06935 2-deoxy-D-gluconate 3 61.1 91 0.002 25.5 9.6 34 13-46 13-46 (258)
366 cd04723 HisA_HisF Phosphoribos 61.0 67 0.0015 26.5 8.3 74 45-138 34-109 (233)
367 TIGR01305 GMP_reduct_1 guanosi 60.8 1.2E+02 0.0026 26.9 11.2 44 93-136 198-241 (343)
368 cd01840 SGNH_hydrolase_yrhL_li 60.8 56 0.0012 24.7 7.4 85 18-116 2-88 (150)
369 cd06279 PBP1_LacI_like_3 Ligan 60.7 54 0.0012 27.3 7.9 16 30-45 25-40 (283)
370 COG0107 HisF Imidazoleglycerol 60.7 30 0.00065 28.9 5.9 72 42-133 26-100 (256)
371 COG3967 DltE Short-chain dehyd 60.6 70 0.0015 26.5 7.9 79 15-113 5-84 (245)
372 PRK14974 cell division protein 60.5 1.2E+02 0.0026 26.8 10.8 61 77-138 222-289 (336)
373 PRK14722 flhF flagellar biosyn 60.2 98 0.0021 27.8 9.6 90 16-123 168-263 (374)
374 PF00218 IGPS: Indole-3-glycer 59.9 74 0.0016 26.9 8.4 87 30-136 149-238 (254)
375 PLN02898 HMP-P kinase/thiamin- 59.9 1.3E+02 0.0028 28.0 10.8 51 77-131 410-467 (502)
376 cd01743 GATase1_Anthranilate_S 59.7 24 0.00051 27.9 5.2 30 18-47 1-30 (184)
377 PRK07259 dihydroorotate dehydr 59.7 1.1E+02 0.0024 26.1 11.7 39 92-133 222-260 (301)
378 PRK11543 gutQ D-arabinose 5-ph 59.6 58 0.0013 28.1 8.1 84 16-121 45-130 (321)
379 PRK14723 flhF flagellar biosyn 59.6 73 0.0016 31.5 9.3 102 16-135 216-330 (767)
380 PRK01581 speE spermidine synth 59.5 79 0.0017 28.4 8.8 28 76-103 225-258 (374)
381 PRK07455 keto-hydroxyglutarate 59.4 87 0.0019 25.0 8.5 89 35-143 9-98 (187)
382 KOG1467 Translation initiation 59.3 33 0.00072 31.7 6.5 78 14-114 384-468 (556)
383 PF03932 CutC: CutC family; I 59.1 40 0.00086 27.5 6.4 92 22-133 96-196 (201)
384 PRK02083 imidazole glycerol ph 59.1 35 0.00077 28.5 6.4 54 80-136 47-103 (253)
385 PRK07315 fructose-bisphosphate 59.0 57 0.0012 28.2 7.8 41 91-133 188-229 (293)
386 PRK01033 imidazole glycerol ph 59.0 26 0.00056 29.6 5.6 72 45-136 29-103 (258)
387 cd04951 GT1_WbdM_like This fam 58.8 85 0.0018 26.7 9.0 61 79-151 264-324 (360)
388 COG0300 DltE Short-chain dehyd 58.8 75 0.0016 27.1 8.3 86 14-114 5-91 (265)
389 PF01564 Spermine_synth: Sperm 58.7 24 0.00052 29.6 5.3 69 16-102 101-180 (246)
390 PRK05096 guanosine 5'-monophos 58.7 33 0.00072 30.3 6.2 54 77-133 122-176 (346)
391 PRK14329 (dimethylallyl)adenos 58.7 65 0.0014 29.8 8.5 96 23-150 35-138 (467)
392 PRK05567 inosine 5'-monophosph 58.6 41 0.00089 31.2 7.3 55 76-133 239-294 (486)
393 KOG1562 Spermidine synthase [A 58.6 48 0.001 28.9 7.0 62 17-96 147-214 (337)
394 cd08563 GDPD_TtGDE_like Glycer 58.5 78 0.0017 25.8 8.3 38 93-135 190-227 (230)
395 PRK08318 dihydropyrimidine deh 58.4 1.1E+02 0.0023 27.8 9.9 41 93-133 239-279 (420)
396 cd04740 DHOD_1B_like Dihydroor 58.3 35 0.00076 29.2 6.4 38 93-133 220-257 (296)
397 PRK09922 UDP-D-galactose:(gluc 58.2 1.2E+02 0.0026 26.4 9.9 67 79-154 259-325 (359)
398 PF02254 TrkA_N: TrkA-N domain 58.2 64 0.0014 22.9 7.8 38 18-56 1-38 (116)
399 PRK14949 DNA polymerase III su 58.0 32 0.00069 34.6 6.6 73 76-151 118-191 (944)
400 COG0159 TrpA Tryptophan syntha 57.7 1.2E+02 0.0026 25.9 9.8 101 17-138 125-235 (265)
401 COG1748 LYS9 Saccharopine dehy 57.7 1.2E+02 0.0026 27.4 9.8 33 16-48 2-34 (389)
402 cd02801 DUS_like_FMN Dihydrour 57.6 1E+02 0.0022 25.0 9.3 40 91-133 170-210 (231)
403 PF04309 G3P_antiterm: Glycero 57.5 8.7 0.00019 30.6 2.3 61 48-133 106-166 (175)
404 TIGR03569 NeuB_NnaB N-acetylne 57.5 1.1E+02 0.0023 27.0 9.3 92 28-143 78-181 (329)
405 cd06295 PBP1_CelR Ligand bindi 57.4 58 0.0013 26.8 7.5 17 29-45 30-46 (275)
406 PF00534 Glycos_transf_1: Glyc 57.2 82 0.0018 23.8 11.6 111 13-154 45-159 (172)
407 PF01008 IF-2B: Initiation fac 56.9 34 0.00074 29.0 6.1 80 14-116 132-219 (282)
408 PRK08649 inosine 5-monophospha 56.8 1.5E+02 0.0032 26.6 11.0 55 76-135 153-214 (368)
409 TIGR00095 RNA methyltransferas 56.7 1E+02 0.0022 24.6 11.6 83 16-114 73-158 (189)
410 PRK08185 hypothetical protein; 56.7 69 0.0015 27.6 7.8 41 88-132 183-224 (283)
411 PRK10537 voltage-gated potassi 56.7 1.1E+02 0.0024 27.6 9.5 114 15-136 240-356 (393)
412 PF02593 dTMP_synthase: Thymid 56.4 65 0.0014 26.6 7.3 58 77-139 51-113 (217)
413 PRK14024 phosphoribosyl isomer 56.4 53 0.0011 27.3 7.0 62 80-144 163-236 (241)
414 cd00429 RPE Ribulose-5-phospha 56.3 60 0.0013 25.8 7.2 58 78-136 128-194 (211)
415 PRK00811 spermidine synthase; 56.2 1.3E+02 0.0028 25.7 10.3 69 16-103 101-181 (283)
416 COG0118 HisH Glutamine amidotr 56.2 28 0.0006 28.4 5.0 39 15-53 1-39 (204)
417 cd06292 PBP1_LacI_like_10 Liga 56.1 69 0.0015 26.3 7.7 20 93-115 111-130 (273)
418 cd08187 BDH Butanol dehydrogen 56.0 92 0.002 27.8 8.9 64 16-100 29-106 (382)
419 cd02812 PcrB_like PcrB_like pr 55.9 48 0.001 27.4 6.5 57 78-138 149-206 (219)
420 cd04733 OYE_like_2_FMN Old yel 55.8 1.4E+02 0.0031 26.1 10.0 39 93-134 281-319 (338)
421 COG1908 FrhD Coenzyme F420-red 55.7 11 0.00023 28.1 2.3 32 111-142 35-66 (132)
422 COG2518 Pcm Protein-L-isoaspar 55.6 34 0.00074 28.1 5.5 66 17-103 96-163 (209)
423 TIGR01163 rpe ribulose-phospha 55.5 1E+02 0.0023 24.5 8.6 55 91-148 43-98 (210)
424 cd03804 GT1_wbaZ_like This fam 55.4 96 0.0021 26.6 8.8 64 79-153 263-326 (351)
425 COG2247 LytB Putative cell wal 55.3 41 0.00088 29.5 6.1 44 14-57 75-124 (337)
426 PRK12723 flagellar biosynthesi 55.2 1.6E+02 0.0035 26.6 10.2 103 15-135 206-319 (388)
427 PRK12703 tRNA 2'-O-methylase; 55.2 1.4E+02 0.003 26.5 9.5 81 16-122 31-113 (339)
428 PRK03612 spermidine synthase; 55.2 1E+02 0.0023 28.9 9.4 69 16-103 322-405 (521)
429 cd02922 FCB2_FMN Flavocytochro 55.1 64 0.0014 28.6 7.6 40 92-135 201-240 (344)
430 TIGR00737 nifR3_yhdG putative 55.0 1.4E+02 0.0031 25.8 10.1 39 92-133 180-219 (319)
431 TIGR00511 ribulose_e2b2 ribose 54.8 70 0.0015 27.7 7.7 79 14-116 140-226 (301)
432 TIGR02130 dapB_plant dihydrodi 54.7 1.4E+02 0.003 25.6 9.6 58 78-141 69-128 (275)
433 COG1184 GCD2 Translation initi 54.7 1E+02 0.0022 26.9 8.4 78 14-115 144-229 (301)
434 cd08185 Fe-ADH1 Iron-containin 54.7 97 0.0021 27.6 8.8 64 16-100 26-103 (380)
435 PF05582 Peptidase_U57: YabG p 54.7 92 0.002 26.8 8.0 103 15-137 105-227 (287)
436 TIGR03590 PseG pseudaminic aci 54.6 1.2E+02 0.0026 25.7 9.0 75 14-116 30-112 (279)
437 cd08562 GDPD_EcUgpQ_like Glyce 54.5 1.1E+02 0.0025 24.6 9.2 100 28-135 118-226 (229)
438 PRK02649 ppnK inorganic polyph 54.4 1.2E+02 0.0026 26.3 9.1 103 28-153 19-124 (305)
439 TIGR00642 mmCoA_mut_beta methy 54.4 1.1E+02 0.0023 29.6 9.3 106 14-143 493-608 (619)
440 cd02930 DCR_FMN 2,4-dienoyl-Co 54.4 1.2E+02 0.0025 26.9 9.2 39 93-134 265-303 (353)
441 PRK09140 2-dehydro-3-deoxy-6-p 54.2 1.2E+02 0.0026 24.7 9.1 67 44-134 110-177 (206)
442 PRK11815 tRNA-dihydrouridine s 54.2 72 0.0016 28.0 7.8 48 93-143 193-246 (333)
443 PLN02316 synthase/transferase 54.1 1.5E+02 0.0033 30.4 10.8 69 78-152 920-997 (1036)
444 PF01729 QRPTase_C: Quinolinat 54.1 43 0.00093 26.4 5.7 56 92-150 66-121 (169)
445 PRK11199 tyrA bifunctional cho 54.0 1.6E+02 0.0035 26.2 10.3 32 15-46 98-129 (374)
446 cd00532 MGS-like MGS-like doma 54.0 48 0.001 23.9 5.7 30 24-53 10-39 (112)
447 PRK06801 hypothetical protein; 54.0 71 0.0015 27.5 7.5 40 91-133 190-230 (286)
448 PRK14960 DNA polymerase III su 53.9 53 0.0011 32.0 7.2 73 77-152 118-191 (702)
449 TIGR01768 GGGP-family geranylg 53.8 62 0.0014 26.8 6.8 63 78-142 150-214 (223)
450 PLN02617 imidazole glycerol ph 53.8 25 0.00055 33.1 5.1 52 80-134 455-510 (538)
451 PRK03512 thiamine-phosphate py 53.4 1.2E+02 0.0027 24.7 9.3 54 77-133 122-183 (211)
452 TIGR02855 spore_yabG sporulati 53.4 1.3E+02 0.0028 25.8 8.6 47 15-61 104-155 (283)
453 cd04949 GT1_gtfA_like This fam 53.3 1.5E+02 0.0032 25.6 11.7 66 79-153 280-345 (372)
454 PRK13586 1-(5-phosphoribosyl)- 53.2 67 0.0015 26.7 7.1 53 79-135 162-217 (232)
455 KOG4369 RTK signaling protein 53.1 30 0.00065 35.7 5.5 20 207-226 1872-1891(2131)
456 PRK13146 hisH imidazole glycer 53.0 31 0.00066 28.1 4.9 36 15-50 1-38 (209)
457 cd06341 PBP1_ABC_ligand_bindin 52.8 1.3E+02 0.0028 25.7 9.2 71 28-120 150-227 (341)
458 KOG1429 dTDP-glucose 4-6-dehyd 52.7 93 0.002 27.1 7.7 76 13-101 25-100 (350)
459 cd04824 eu_ALAD_PBGS_cysteine_ 52.6 56 0.0012 28.5 6.5 53 75-132 236-288 (320)
460 COG0269 SgbH 3-hexulose-6-phos 52.5 1.3E+02 0.0029 24.8 9.4 108 15-143 83-204 (217)
461 PRK09860 putative alcohol dehy 52.4 1.3E+02 0.0029 26.9 9.3 64 16-100 32-108 (383)
462 PRK02290 3-dehydroquinate synt 52.4 1.1E+02 0.0024 27.1 8.4 66 80-150 91-158 (344)
463 PRK05282 (alpha)-aspartyl dipe 52.3 1.2E+02 0.0027 25.2 8.4 65 14-102 30-100 (233)
464 COG4378 Uncharacterized protei 52.2 19 0.00042 25.3 3.0 75 17-113 2-77 (103)
465 cd04726 KGPDC_HPS 3-Keto-L-gul 52.1 40 0.00088 26.8 5.5 41 92-134 40-82 (202)
466 PRK09283 delta-aminolevulinic 52.0 53 0.0011 28.7 6.3 52 75-132 239-290 (323)
467 PRK14101 bifunctional glucokin 52.0 1.9E+02 0.0042 27.8 10.9 78 17-116 472-551 (638)
468 TIGR01452 PGP_euk phosphoglyco 52.0 60 0.0013 27.5 6.8 48 78-131 2-61 (279)
469 TIGR01769 GGGP geranylgeranylg 51.9 52 0.0011 26.9 6.0 56 77-135 147-204 (205)
470 TIGR00007 phosphoribosylformim 51.9 69 0.0015 26.1 7.0 54 80-136 45-101 (230)
471 PF13552 DUF4127: Protein of u 51.8 53 0.0011 30.7 6.8 76 21-114 7-110 (497)
472 cd01834 SGNH_hydrolase_like_2 51.7 78 0.0017 24.3 7.0 88 16-116 2-113 (191)
473 TIGR00006 S-adenosyl-methyltra 51.7 71 0.0015 27.8 7.1 58 16-88 45-103 (305)
474 COG1609 PurR Transcriptional r 51.6 71 0.0015 27.9 7.3 37 26-62 75-117 (333)
475 PRK08999 hypothetical protein; 51.4 25 0.00053 30.3 4.4 53 77-133 246-305 (312)
476 cd03820 GT1_amsD_like This fam 51.4 1.4E+02 0.003 24.6 12.2 66 78-152 253-318 (348)
477 PRK14994 SAM-dependent 16S rib 51.4 96 0.0021 26.7 7.9 46 79-130 86-134 (287)
478 TIGR00393 kpsF KpsF/GutQ famil 51.3 93 0.002 25.9 7.8 80 21-121 8-88 (268)
479 cd06336 PBP1_ABC_ligand_bindin 51.3 1.6E+02 0.0035 25.4 10.1 68 30-119 157-232 (347)
480 cd06296 PBP1_CatR_like Ligand- 51.2 89 0.0019 25.5 7.7 21 92-115 105-125 (270)
481 PRK10538 malonic semialdehyde 51.2 1.2E+02 0.0025 24.8 8.3 38 16-53 1-38 (248)
482 PF06073 DUF934: Bacterial pro 51.1 95 0.0021 22.7 6.9 65 79-145 21-87 (110)
483 PRK07998 gatY putative fructos 51.1 69 0.0015 27.6 6.9 67 45-133 152-226 (283)
484 cd03785 GT1_MurG MurG is an N- 51.1 1.6E+02 0.0034 25.2 11.7 65 78-152 253-323 (350)
485 CHL00188 hisH imidazole glycer 51.1 84 0.0018 25.6 7.2 34 16-49 2-35 (210)
486 PF13433 Peripla_BP_5: Peripla 51.0 49 0.0011 29.6 6.1 80 16-115 135-226 (363)
487 PRK14331 (dimethylallyl)adenos 51.0 1.3E+02 0.0028 27.5 9.1 69 78-149 38-114 (437)
488 PRK04148 hypothetical protein; 50.9 53 0.0011 24.9 5.5 59 14-92 16-74 (134)
489 cd03801 GT1_YqgM_like This fam 50.9 1.4E+02 0.0031 24.7 11.7 64 79-152 277-340 (374)
490 PF10672 Methyltrans_SAM: S-ad 50.6 70 0.0015 27.6 6.9 54 15-85 146-203 (286)
491 PRK05286 dihydroorotate dehydr 50.6 45 0.00097 29.5 5.9 40 93-133 276-315 (344)
492 TIGR03061 pip_yhgE_Nterm YhgE/ 50.5 1.1E+02 0.0025 23.5 8.1 45 13-58 41-95 (164)
493 PF00117 GATase: Glutamine ami 50.4 55 0.0012 25.7 6.0 28 19-46 1-28 (192)
494 COG1184 GCD2 Translation initi 50.4 62 0.0013 28.1 6.5 61 39-117 120-180 (301)
495 PF03932 CutC: CutC family; I 50.3 86 0.0019 25.5 7.0 72 44-136 6-92 (201)
496 PF07279 DUF1442: Protein of u 50.2 1.5E+02 0.0032 24.6 9.1 73 16-114 71-148 (218)
497 PRK08335 translation initiatio 50.1 1.1E+02 0.0024 26.2 8.0 80 13-116 133-220 (275)
498 TIGR01304 IMP_DH_rel_2 IMP deh 50.1 1.6E+02 0.0034 26.5 9.2 104 13-135 153-283 (369)
499 PRK07807 inosine 5-monophospha 49.9 2.2E+02 0.0047 26.5 10.6 106 8-135 232-358 (479)
500 TIGR01919 hisA-trpF 1-(5-phosp 49.9 86 0.0019 26.2 7.2 69 47-135 150-224 (243)
No 1
>PLN03029 type-a response regulator protein; Provisional
Probab=100.00 E-value=1.9e-38 Score=263.02 Aligned_cols=212 Identities=78% Similarity=1.128 Sum_probs=163.7
Q ss_pred hcCcceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCC--CCCCCCCCcccccccEEEEeCCCCC
Q 026239 12 AESQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQS--SHSVYPNMHQEVGVNLVITDYCMPG 89 (241)
Q Consensus 12 ~~~~~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~--~~~~~~~~~~~~~~dlIilD~~mp~ 89 (241)
.+++++||||||+...+..+..+|+..||.|.++.++.++++.+....+|... .+++.+..+.+..+|+||+|+.||+
T Consensus 5 ~~~~~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a~sg~~al~~l~~~~~d~~~p~~~~~~~~~~~~~~~dlVllD~~mp~ 84 (222)
T PLN03029 5 TESQFHVLAVDDSLIDRKLIEKLLKTSSYQVTTVDSGSKALKFLGLHEDDRSNPDTPSVSPNSHQEVEVNLIITDYCMPG 84 (222)
T ss_pred CCCCccEEEEeCCHHHHHHHHHHHHHcCceEEEECCHHHHHHHHHhccccccccccccccccccccccCCEEEEcCCCCC
Confidence 56789999999999999999999999999999999999999999765544211 2334445566778999999999999
Q ss_pred CCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHHHHHHHHHHHHHHHHHhh-
Q 026239 90 MTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMKTKIKDQIKQQSQQQQE- 168 (241)
Q Consensus 90 ~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~~~~~~~~~~~~~q~~~~- 168 (241)
++|+++++.|+......++|||++|+........+++++|+++||.||++..+|.+++.++++.+.+.........+..
T Consensus 85 ~~G~e~l~~ir~~~~~~~ipvIils~~~~~~~~~~al~~Ga~dyl~KP~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (222)
T PLN03029 85 MTGYDLLKKIKESSSLRNIPVVIMSSENVPSRITRCLEEGAEEFFLKPVQLSDLNRLKPHMMKTKSKNQKQENQEKQEKL 164 (222)
T ss_pred CCHHHHHHHHHhccccCCCcEEEEeCCCCHHHHHHHHHhCchheEECCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Confidence 9999999999987655689999999999999999999999999999999999999998888877665544332222111
Q ss_pred ---hhcccCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhHhhhhhhcCCCCCCCCCcCCCcccC
Q 026239 169 ---EESDESDFQSPSPPQQQPQESQQSQQQQQQQQQQQQQQQQQQQQSNNNKRKALEEGLSPERTRPRYNGIATVV 241 (241)
Q Consensus 169 ---~~~~~~~~~~~s~~qqq~q~~qqqqqqqqqqqq~q~q~qq~~q~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 241 (241)
....+.......+++.+++.++++ ++.+++|||+|+||+|||++|||||||||||
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (222)
T PLN03029 165 EESEIQSEKQEQPSQQPQSQPQPQQQP------------------QQPNNNKRKAMEEGLSPDRTRPRYNGITTVV 222 (222)
T ss_pred hhHHhhcccccccCCCCCCCCCCCCCC------------------CCcchhHHHHHHhccCCCCCCcccCCceeeC
Confidence 111111112222222222222222 3789999999999999999999999999987
No 2
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.91 E-value=7.1e-24 Score=176.05 Aligned_cols=119 Identities=22% Similarity=0.419 Sum_probs=107.8
Q ss_pred ceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHHHH
Q 026239 16 FHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYDL 95 (241)
Q Consensus 16 ~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~~l 95 (241)
++||||||++..+..|...|...||.|..+.++.+|++.+... ||+||+|+.||+++|+++
T Consensus 1 ~~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~-------------------~dlviLD~~lP~~dG~~~ 61 (229)
T COG0745 1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAAREQ-------------------PDLVLLDLMLPDLDGLEL 61 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC-------------------CCEEEEECCCCCCCHHHH
Confidence 5899999999999999999999999999999999999998543 559999999999999999
Q ss_pred HHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHHHHH
Q 026239 96 LKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMKTK 154 (241)
Q Consensus 96 l~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~~~~ 154 (241)
|++||+. ....+|||++|+..+......++++|||||+.|||++.+|...+..++++.
T Consensus 62 ~~~iR~~-~~~~~PIi~Lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~ 119 (229)
T COG0745 62 CRRLRAK-KGSGPPIIVLTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRRN 119 (229)
T ss_pred HHHHHhh-cCCCCcEEEEECCCcHHHHHHHHhCcCCeeeeCCCCHHHHHHHHHHHHCcC
Confidence 9999965 345789999999999999999999999999999999999977666666544
No 3
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=99.89 E-value=5.7e-22 Score=155.41 Aligned_cols=119 Identities=24% Similarity=0.368 Sum_probs=107.4
Q ss_pred cceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHHH
Q 026239 15 QFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYD 94 (241)
Q Consensus 15 ~~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~~ 94 (241)
..-|.|||||..+|+.+..+|+..||.+.++.|+.+.|.......| .|+|+|+.||+++|++
T Consensus 4 ~~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~~~~p------------------GclllDvrMPg~sGle 65 (202)
T COG4566 4 EPLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAPLDRP------------------GCLLLDVRMPGMSGLE 65 (202)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhhccCCCC------------------CeEEEecCCCCCchHH
Confidence 3568899999999999999999999999999999999987544433 4999999999999999
Q ss_pred HHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHHHH
Q 026239 95 LLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMKT 153 (241)
Q Consensus 95 ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~~~ 153 (241)
+...|..... .+||||+|++.+.....++++.||.|||.|||+..+|...+...+..
T Consensus 66 lq~~L~~~~~--~~PVIfiTGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~~ 122 (202)
T COG4566 66 LQDRLAERGI--RLPVIFLTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALAR 122 (202)
T ss_pred HHHHHHhcCC--CCCEEEEeCCCChHHHHHHHHcchhhHHhCCCchHHHHHHHHHHHHH
Confidence 9999999876 89999999999999999999999999999999999998776666544
No 4
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=99.88 E-value=3.9e-22 Score=178.04 Aligned_cols=121 Identities=31% Similarity=0.498 Sum_probs=108.7
Q ss_pred cceEEEEeCCHHHHHHHHHHhhc--CCCEEE-EECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCC
Q 026239 15 QFHVLAVDDSIIDRKLIERLLKT--SSYQVT-TVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMT 91 (241)
Q Consensus 15 ~~~ILiVdd~~~~~~~l~~~L~~--~g~~v~-~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~ 91 (241)
+++||||||++.+|++|+.++.. .|+.|+ +|.||.+|++.+.... |||||+|+.||+||
T Consensus 1 MykVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli~e~~------------------pDiviTDI~MP~md 62 (475)
T COG4753 1 MYKVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQETQ------------------PDIVITDINMPGMD 62 (475)
T ss_pred CeeEEEecChHHHHHHHHHhCChhhcCCeEEEecccHHHHHHHHHhcC------------------CCEEEEecCCCCCc
Confidence 47999999999999999999964 478776 8999999999996555 45999999999999
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHHHHHH
Q 026239 92 GYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMKTKI 155 (241)
Q Consensus 92 g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~~~~~ 155 (241)
|+++++.+++..+ ++.+||+|+.++.+.+.+|++.|+.|||+||++.++|..++.++.....
T Consensus 63 GLdLI~~ike~~p--~~~~IILSGy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki~~kl~ 124 (475)
T COG4753 63 GLDLIKAIKEQSP--DTEFIILSGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKIIGKLE 124 (475)
T ss_pred HHHHHHHHHHhCC--CceEEEEeccchhHHHHHHHhcCchhheeCcCCHHHHHHHHHHHHHHHH
Confidence 9999999999765 9999999999999999999999999999999999999888777755443
No 5
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.88 E-value=5.3e-22 Score=177.46 Aligned_cols=120 Identities=34% Similarity=0.520 Sum_probs=110.3
Q ss_pred cceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHHH
Q 026239 15 QFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYD 94 (241)
Q Consensus 15 ~~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~~ 94 (241)
..+||||||+...|..+...|+..||.|.++.++.+|++.+... .+|+||+|+.||+++|++
T Consensus 4 ~~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~------------------~~~lvl~Di~mp~~~Gl~ 65 (464)
T COG2204 4 MARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSES------------------PFDLVLLDIRMPGMDGLE 65 (464)
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcC------------------CCCEEEEecCCCCCchHH
Confidence 46799999999999999999999999999999999999999654 366999999999999999
Q ss_pred HHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHHHHH
Q 026239 95 LLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMKTK 154 (241)
Q Consensus 95 ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~~~~ 154 (241)
+++.|+...+ ++|||+||++.+.+.++.|++.||.|||.|||+++.|..++.+.+..+
T Consensus 66 ll~~i~~~~~--~~pVI~~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~ 123 (464)
T COG2204 66 LLKEIKSRDP--DLPVIVMTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALELR 123 (464)
T ss_pred HHHHHHhhCC--CCCEEEEeCCCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHHHh
Confidence 9999999875 999999999999999999999999999999999999987777666543
No 6
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=99.86 E-value=9.4e-21 Score=151.30 Aligned_cols=121 Identities=19% Similarity=0.372 Sum_probs=107.5
Q ss_pred ceEEEEeCCHHHHHHHHHHhhcC-CCEEE-EECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHH
Q 026239 16 FHVLAVDDSIIDRKLIERLLKTS-SYQVT-TVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGY 93 (241)
Q Consensus 16 ~~ILiVdd~~~~~~~l~~~L~~~-g~~v~-~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~ 93 (241)
++|||||||+.+...-+++++.. ||.++ ++.++++|...+....|| ||++|+.||+.+|+
T Consensus 1 i~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~~~~pD------------------LILLDiYmPd~~Gi 62 (224)
T COG4565 1 INVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIEEFKPD------------------LILLDIYMPDGNGI 62 (224)
T ss_pred CcEEEEcCchHHHHHHHHHHHhCCCceEEEeeccHHHHHHHHHhhCCC------------------EEEEeeccCCCccH
Confidence 58999999999999999999865 78776 899999999999766555 99999999999999
Q ss_pred HHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHHHHHHH
Q 026239 94 DLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMKTKIK 156 (241)
Q Consensus 94 ~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~~~~~~ 156 (241)
+|+.+|++... .+-||++|+.++.+.+.++++.|+.|||+|||..+.|...+......+..
T Consensus 63 ~lL~~ir~~~~--~~DVI~iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y~~~r~~ 123 (224)
T COG4565 63 ELLPELRSQHY--PVDVIVITAASDMETIKEALRYGVVDYLIKPFTFERLQQALTRYRQKRHA 123 (224)
T ss_pred HHHHHHHhcCC--CCCEEEEeccchHHHHHHHHhcCchhheecceeHHHHHHHHHHHHHHHHH
Confidence 99999998765 78899999999999999999999999999999999997766666554443
No 7
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=99.86 E-value=1.5e-20 Score=138.23 Aligned_cols=110 Identities=34% Similarity=0.617 Sum_probs=102.1
Q ss_pred EEEEeCCHHHHHHHHHHhhcCCC-EEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHHHHH
Q 026239 18 VLAVDDSIIDRKLIERLLKTSSY-QVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYDLL 96 (241)
Q Consensus 18 ILiVdd~~~~~~~l~~~L~~~g~-~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~~ll 96 (241)
||||||++..+..+..+|+..|| .|..+.++.+++..+.... ||+||+|+.||+++|++++
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~~~------------------~d~iiid~~~~~~~~~~~~ 62 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLKKHP------------------PDLIIIDLELPDGDGLELL 62 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHST------------------ESEEEEESSSSSSBHHHHH
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhcccC------------------ceEEEEEeeeccccccccc
Confidence 79999999999999999999999 8999999999999996554 5599999999999999999
Q ss_pred HHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhh
Q 026239 97 KKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLK 147 (241)
Q Consensus 97 ~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~ 147 (241)
+.|+...+ .+|+|++|+..+.....+++++|+++||.||++.++|...+
T Consensus 63 ~~i~~~~~--~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i 111 (112)
T PF00072_consen 63 EQIRQINP--SIPIIVVTDEDDSDEVQEALRAGADDYLSKPFSPEELRAAI 111 (112)
T ss_dssp HHHHHHTT--TSEEEEEESSTSHHHHHHHHHTTESEEEESSSSHHHHHHHH
T ss_pred cccccccc--cccEEEecCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHhh
Confidence 99998874 89999999999999999999999999999999999986654
No 8
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=99.85 E-value=1.7e-20 Score=160.39 Aligned_cols=118 Identities=31% Similarity=0.521 Sum_probs=108.1
Q ss_pred hcCcceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCC
Q 026239 12 AESQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMT 91 (241)
Q Consensus 12 ~~~~~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~ 91 (241)
....++||+|||++..+..++.+|+..||.|..+++|+++++..... .+|+||+|++||+|+
T Consensus 11 ~~~~~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~~~~------------------~~dlvllD~~mp~md 72 (360)
T COG3437 11 PDEKLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQEE------------------PPDLVLLDVRMPEMD 72 (360)
T ss_pred CcccceEEEecCchhHHHHHHHHHHhcccceeeecCchHHHHHhccc------------------CCceEEeeccCCCcc
Confidence 45689999999999999999999999999999999999999988543 366999999999999
Q ss_pred HHHHHHHHHh-cCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhh
Q 026239 92 GYDLLKKIKE-SSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLK 147 (241)
Q Consensus 92 g~~ll~~ir~-~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~ 147 (241)
|+++|.+|+. .+....+||+++|+..+.+...+++.+||++||.||+++.+|...+
T Consensus 73 g~ev~~~lk~~~p~t~~ip~i~lT~~~d~~~~~~~~~~g~~dyl~KP~~~~~l~~rv 129 (360)
T COG3437 73 GAEVLNKLKAMSPSTRRIPVILLTAYADSEDRQRALEAGADDYLSKPISPKELVARV 129 (360)
T ss_pred HHHHHHHHHhcCCcccccceEEEeecCChHHHHHHHHhhHHHHhcCCCCHHHHHHHH
Confidence 9999999999 6667789999999999999999999999999999999998886544
No 9
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.82 E-value=2.3e-19 Score=147.56 Aligned_cols=119 Identities=28% Similarity=0.485 Sum_probs=106.6
Q ss_pred ceEEEEeCCHHHHHHHHHHhhcCC-CEEE-EECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHH
Q 026239 16 FHVLAVDDSIIDRKLIERLLKTSS-YQVT-TVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGY 93 (241)
Q Consensus 16 ~~ILiVdd~~~~~~~l~~~L~~~g-~~v~-~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~ 93 (241)
++|+|+||++.+|..++.+|...+ ++|+ .+.++.++++.+.... ||+||+|+.||+++|+
T Consensus 1 ~~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~~~~------------------pdvvl~Dl~mP~~~G~ 62 (211)
T COG2197 1 IKVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLARELK------------------PDVVLLDLSMPGMDGL 62 (211)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCEEEEEeCCHHHHHHHhhhcC------------------CCEEEEcCCCCCCChH
Confidence 479999999999999999998765 7766 7888999999976554 4599999999999999
Q ss_pred HHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHHHHH
Q 026239 94 DLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMKTK 154 (241)
Q Consensus 94 ~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~~~~ 154 (241)
++++.|++..+ +++||++|...+...+.+++++||++|++|..++++|...+..+..+.
T Consensus 63 e~~~~l~~~~p--~~~vvvlt~~~~~~~v~~al~~Ga~Gyl~K~~~~~~l~~ai~~v~~G~ 121 (211)
T COG2197 63 EALKQLRARGP--DIKVVVLTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAAGG 121 (211)
T ss_pred HHHHHHHHHCC--CCcEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence 99999997654 889999999999999999999999999999999999998888887544
No 10
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=99.79 E-value=8e-18 Score=126.77 Aligned_cols=116 Identities=33% Similarity=0.602 Sum_probs=99.3
Q ss_pred CcceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCHH-HHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCH
Q 026239 14 SQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGS-KALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTG 92 (241)
Q Consensus 14 ~~~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~-~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g 92 (241)
...+||+|||++..+..+...|...|+.|..+.++. +|++.+.... .||+||+|+.||+++|
T Consensus 4 ~~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~g~~~al~~~~~~~-----------------~~dlii~D~~mp~~~G 66 (130)
T COG0784 4 SGLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLRELP-----------------QPDLILLDINMPGMDG 66 (130)
T ss_pred CCcEEEEEcCCHHHHHHHHHHHHHcCCeEEEeCChHHHHHHHHHhCC-----------------CCCEEEEeCCCCCCCH
Confidence 468999999999999999999999999999999995 9999996542 2569999999999999
Q ss_pred HHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHH-HHHhhH
Q 026239 93 YDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSD-LNKLKP 148 (241)
Q Consensus 93 ~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~-L~~~~~ 148 (241)
+++++.++... +.+|+|++|+.........+++.|+++|+.||+...+ |...+.
T Consensus 67 ~~~~~~l~~~~--~~~pvv~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~ 121 (130)
T COG0784 67 IELLRRLRARG--PNIPVILLTAYADEADRERALAAGADDYLTKPIFLEEELLAALR 121 (130)
T ss_pred HHHHHHHHhCC--CCCCEEEEEcCcCHHHHHHHHHcCCCeEEcCCCCcHHHHHHHHH
Confidence 99999999873 3788888999888776777899999999999977666 544333
No 11
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=99.79 E-value=5.7e-18 Score=140.40 Aligned_cols=120 Identities=14% Similarity=0.278 Sum_probs=105.1
Q ss_pred CcceEEEEeCCHHHHHHHHHHhhc-CCCE-EEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCC
Q 026239 14 SQFHVLAVDDSIIDRKLIERLLKT-SSYQ-VTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMT 91 (241)
Q Consensus 14 ~~~~ILiVdd~~~~~~~l~~~L~~-~g~~-v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~ 91 (241)
..++||||||++..+..+..+|.. .++. |..+.++.++++.+.... ||+||+|+.||+++
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~~al~~~~~~~------------------pdlvllD~~mp~~~ 64 (225)
T PRK10046 3 APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFK------------------PGLILLDNYLPDGR 64 (225)
T ss_pred CcceEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcC------------------CCEEEEeCCCCCCc
Confidence 358999999999999999999986 4775 568999999999996554 45999999999999
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHHHH
Q 026239 92 GYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMKT 153 (241)
Q Consensus 92 g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~~~ 153 (241)
|+++++.|+...+ .+|||++|+..+...+..+++.||++||.||++.++|...+.++...
T Consensus 65 gle~~~~l~~~~~--~~~iivls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~~i~~~~~~ 124 (225)
T PRK10046 65 GINLLHELVQAHY--PGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 (225)
T ss_pred HHHHHHHHHhcCC--CCCEEEEEcCCCHHHHHHHHHcCccEEEECCcCHHHHHHHHHHHHHH
Confidence 9999999997544 67999999999999999999999999999999999998777666543
No 12
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=99.78 E-value=8.1e-18 Score=149.61 Aligned_cols=114 Identities=28% Similarity=0.527 Sum_probs=106.1
Q ss_pred CcceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHH
Q 026239 14 SQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGY 93 (241)
Q Consensus 14 ~~~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~ 93 (241)
...+||+|||+...+..++.+|...||.|..+.++.+|+..+... .||+||+|+.||++||+
T Consensus 131 ~~~kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~~~e~------------------~~dlil~d~~mp~~dg~ 192 (435)
T COG3706 131 APKKILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLAEL------------------PPDLVLLDANMPDMDGL 192 (435)
T ss_pred cCceEEEEcCcHHHHHHHHHHHHhccceeeeecCHHHHHHHHhcC------------------CCcEEEEecCCCccCHH
Confidence 468999999999999999999999999999999999999999644 46699999999999999
Q ss_pred HHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHH
Q 026239 94 DLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNK 145 (241)
Q Consensus 94 ~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~ 145 (241)
++|+.+|.......+|||++++.++.....++++.|++|||.||+...+|..
T Consensus 193 el~~~lr~~~~t~~ipii~~~~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~ 244 (435)
T COG3706 193 ELCTRLRQLERTRDIPIILLSSKDDDELVVRAFELGVNDYITKPIEEGELRA 244 (435)
T ss_pred HHHHHHhcccccccccEEEEecccchHHHHHHHHcCCcceEecCCCHHHHHH
Confidence 9999999988878999999999999999999999999999999999888753
No 13
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=99.78 E-value=2e-18 Score=165.73 Aligned_cols=119 Identities=30% Similarity=0.544 Sum_probs=108.0
Q ss_pred CcceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHH
Q 026239 14 SQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGY 93 (241)
Q Consensus 14 ~~~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~ 93 (241)
..++||+|||+...++....+|+..|..++.+.+|.+|++.+. ....||+||+|++||.|||+
T Consensus 665 ~g~~iLlvddn~vn~~Va~~~l~~~g~~~~~~~sg~e~l~~~~-----------------~~~~y~~ifmD~qMP~mDG~ 727 (786)
T KOG0519|consen 665 TGPKILLVDDNPVNRKVATGMLKKLGAEVTEVNSGQEALDKLK-----------------PPHSYDVIFMDLQMPEMDGY 727 (786)
T ss_pred cCCceEEEecccchHHHHHHHHHHhCCeeEeecCcHHHHHhcC-----------------CCCcccEEEEEcCCcccchH
Confidence 4689999999999999999999999999999999999999985 13568999999999999999
Q ss_pred HHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHH
Q 026239 94 DLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHL 150 (241)
Q Consensus 94 ~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l 150 (241)
++.++||+... .++|||+||+...++...+|++.|.|+||.|||+...|...+..+
T Consensus 728 e~~~~irk~~~-~~~pIvAlTa~~~~~~~~~c~~~Gmd~yl~KP~~~~~l~~~l~~~ 783 (786)
T KOG0519|consen 728 EATREIRKKER-WHLPIVALTADADPSTEEECLEVGMDGYLSKPFTLEKLVKILREF 783 (786)
T ss_pred HHHHHHHHhhc-CCCCEEEEecCCcHHHHHHHHHhCCceEEcccccHHHHHHHHHHH
Confidence 99999998765 589999999999999999999999999999999988876655544
No 14
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=99.76 E-value=1.1e-17 Score=126.54 Aligned_cols=111 Identities=18% Similarity=0.290 Sum_probs=103.1
Q ss_pred ceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHHHH
Q 026239 16 FHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYDL 95 (241)
Q Consensus 16 ~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~~l 95 (241)
.+.||||||..+...|.+.|+..||.|.++.+..++|..++...|. -.++|+.|.+.+|+++
T Consensus 10 ~~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art~~Pa------------------yAvvDlkL~~gsGL~~ 71 (182)
T COG4567 10 KSLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAARTAPPA------------------YAVVDLKLGDGSGLAV 71 (182)
T ss_pred ceeEEecCChHHHHHHHHHHhccCceeEeeccHHHHHHHHhcCCCc------------------eEEEEeeecCCCchHH
Confidence 3799999999999999999999999999999999999999766555 8899999999999999
Q ss_pred HHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHh
Q 026239 96 LKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKL 146 (241)
Q Consensus 96 l~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~ 146 (241)
++.|++... +..||++|++.+....+.|++.||++||.||.+.+++...
T Consensus 72 i~~lr~~~~--d~rivvLTGy~sIATAV~AvKlGA~~YLaKPAdaDdi~aA 120 (182)
T COG4567 72 IEALRERRA--DMRIVVLTGYASIATAVEAVKLGACDYLAKPADADDILAA 120 (182)
T ss_pred HHHHHhcCC--cceEEEEecchHHHHHHHHHHhhhhhhcCCCCChHHHHHH
Confidence 999999876 9999999999999999999999999999999999987543
No 15
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=99.76 E-value=4.1e-18 Score=141.78 Aligned_cols=117 Identities=23% Similarity=0.416 Sum_probs=104.6
Q ss_pred ceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHHHH
Q 026239 16 FHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYDL 95 (241)
Q Consensus 16 ~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~~l 95 (241)
++|+|||||......|..+|++.|..+..|++..+|++++....|| |||+|+.||+|+|++|
T Consensus 1 ~~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le~~kpD------------------LifldI~mp~~ngief 62 (361)
T COG3947 1 PRIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEVFKPD------------------LIFLDIVMPYMNGIEF 62 (361)
T ss_pred CcEEEEcchHHHHHHHHHHHHhccchhhccCCHHHHHHHHHhcCCC------------------EEEEEeecCCccHHHH
Confidence 4799999999999999999999998888999999999999766655 9999999999999999
Q ss_pred HHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHHHHH
Q 026239 96 LKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMKTK 154 (241)
Q Consensus 96 l~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~~~~ 154 (241)
++.++...+ .+|||++|++. +.....+...++||+.||++++.|++.+.++.+..
T Consensus 63 aeQvr~i~~--~v~iifIssh~--eya~dsf~~n~~dYl~KPvt~ekLnraIdr~~k~v 117 (361)
T COG3947 63 AEQVRDIES--AVPIIFISSHA--EYADDSFGMNLDDYLPKPVTPEKLNRAIDRRLKRV 117 (361)
T ss_pred HHHHHHhhc--cCcEEEEecch--hhhhhhcccchHhhccCCCCHHHHHHHHHHHhccc
Confidence 999998875 89999999985 55667777888999999999999999988877443
No 16
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=99.75 E-value=5.2e-17 Score=133.39 Aligned_cols=117 Identities=21% Similarity=0.419 Sum_probs=104.7
Q ss_pred ceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHHHH
Q 026239 16 FHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYDL 95 (241)
Q Consensus 16 ~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~~l 95 (241)
++||+|||++..+..+...|...||.|..+.++.+++..+.... ||+||+|+.||+++|+++
T Consensus 1 m~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~~~------------------~dlvild~~l~~~~g~~l 62 (223)
T PRK10816 1 MRVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNEHL------------------PDIAIVDLGLPDEDGLSL 62 (223)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhhCC------------------CCEEEEECCCCCCCHHHH
Confidence 47999999999999999999999999999999999999885443 569999999999999999
Q ss_pred HHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHHH
Q 026239 96 LKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMK 152 (241)
Q Consensus 96 l~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~~ 152 (241)
++.++...+ ++|||++|+..+......+++.||++|+.||++..+|...+..+++
T Consensus 63 ~~~lr~~~~--~~pii~ls~~~~~~~~~~~l~~Ga~d~l~kp~~~~eL~~~i~~~~~ 117 (223)
T PRK10816 63 IRRWRSNDV--SLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMR 117 (223)
T ss_pred HHHHHhcCC--CCCEEEEEcCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHh
Confidence 999998654 8999999999999999999999999999999999998776665544
No 17
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=99.74 E-value=7e-17 Score=132.67 Aligned_cols=116 Identities=21% Similarity=0.387 Sum_probs=103.0
Q ss_pred ceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHHHH
Q 026239 16 FHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYDL 95 (241)
Q Consensus 16 ~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~~l 95 (241)
.+||+|||++..+..+...|...||.+..+.++.+++..+... .||+||+|+.||+++|+++
T Consensus 2 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~------------------~~dlvild~~l~~~~g~~~ 63 (225)
T PRK10529 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATR------------------KPDLIILDLGLPDGDGIEF 63 (225)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcC------------------CCCEEEEeCCCCCCCHHHH
Confidence 5899999999999999999999999999999999999877543 3569999999999999999
Q ss_pred HHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHHH
Q 026239 96 LKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMK 152 (241)
Q Consensus 96 l~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~~ 152 (241)
++.|+.. ..+|+|++|+..+......+++.||++|+.||++..+|...+..+++
T Consensus 64 ~~~lr~~---~~~pvi~lt~~~~~~~~~~~~~~ga~~~l~kP~~~~~l~~~i~~~~~ 117 (225)
T PRK10529 64 IRDLRQW---SAIPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALR 117 (225)
T ss_pred HHHHHcC---CCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 9999974 37899999999989999999999999999999999998776655543
No 18
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=99.74 E-value=8.3e-17 Score=132.52 Aligned_cols=117 Identities=19% Similarity=0.441 Sum_probs=104.1
Q ss_pred ceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHHHH
Q 026239 16 FHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYDL 95 (241)
Q Consensus 16 ~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~~l 95 (241)
++||+|||++..+..+...|...||.|..+.++.+++..+... .||+||+|+.||+++|+++
T Consensus 1 m~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~------------------~~dlvild~~~~~~~g~~~ 62 (227)
T PRK09836 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTG------------------DYDLIILDIMLPDVNGWDI 62 (227)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhhC------------------CCCEEEEECCCCCCCHHHH
Confidence 4799999999999999999998999999999999999887543 3569999999999999999
Q ss_pred HHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHHH
Q 026239 96 LKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMK 152 (241)
Q Consensus 96 l~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~~ 152 (241)
++.++...+ ++|||++|+..+......+++.||++|+.||++..+|...+..+++
T Consensus 63 ~~~lr~~~~--~~pii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 117 (227)
T PRK09836 63 VRMLRSANK--GMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLR 117 (227)
T ss_pred HHHHHhcCC--CCCEEEEEcCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 999998653 7999999999999999999999999999999999998776655543
No 19
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=99.74 E-value=1.2e-16 Score=130.53 Aligned_cols=117 Identities=22% Similarity=0.413 Sum_probs=104.1
Q ss_pred ceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHHHH
Q 026239 16 FHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYDL 95 (241)
Q Consensus 16 ~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~~l 95 (241)
++||+|||++..+..+...|...|+.+..+.++.+++..+.... ||+||+|+.||+++|+++
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~------------------~d~illd~~~~~~~g~~~ 62 (222)
T PRK10643 1 MKILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLESGH------------------YSLVVLDLGLPDEDGLHL 62 (222)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCC------------------CCEEEEECCCCCCCHHHH
Confidence 47999999999999999999999999999999999999885443 569999999999999999
Q ss_pred HHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHHH
Q 026239 96 LKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMK 152 (241)
Q Consensus 96 l~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~~ 152 (241)
++.++...+ .+|||++|+..+......+++.|+++|+.||++.++|...+..+++
T Consensus 63 ~~~l~~~~~--~~pii~ls~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~ 117 (222)
T PRK10643 63 LRRWRQKKY--TLPVLILTARDTLEDRVAGLDVGADDYLVKPFALEELHARIRALIR 117 (222)
T ss_pred HHHHHhcCC--CCcEEEEECCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHh
Confidence 999997653 7899999999999999999999999999999999999776665543
No 20
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=99.73 E-value=1.2e-16 Score=131.65 Aligned_cols=119 Identities=26% Similarity=0.438 Sum_probs=105.9
Q ss_pred ceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHHHH
Q 026239 16 FHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYDL 95 (241)
Q Consensus 16 ~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~~l 95 (241)
.+||+|||++..+..+...|...||.+..+.++.+++..+.... ||+||+|+.||+++|+++
T Consensus 3 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~------------------~dlvild~~l~~~~g~~~ 64 (229)
T PRK10161 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPW------------------PDLILLDWMLPGGSGIQF 64 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhccC------------------CCEEEEeCCCCCCCHHHH
Confidence 67999999999999999999988999999999999999885433 569999999999999999
Q ss_pred HHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHHH
Q 026239 96 LKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMK 152 (241)
Q Consensus 96 l~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~~ 152 (241)
++.++.....+.+|||++|+..+......++++||++|+.||++..+|...+..+.+
T Consensus 65 ~~~l~~~~~~~~~pvi~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~ 121 (229)
T PRK10161 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 (229)
T ss_pred HHHHHhccccCCCCEEEEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHh
Confidence 999997643357999999999999999999999999999999999999877766554
No 21
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=99.73 E-value=1.2e-16 Score=133.56 Aligned_cols=119 Identities=24% Similarity=0.362 Sum_probs=102.1
Q ss_pred cceEEEEeCCHHHHHHHHHHhhc-CCCEEE-EECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCH
Q 026239 15 QFHVLAVDDSIIDRKLIERLLKT-SSYQVT-TVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTG 92 (241)
Q Consensus 15 ~~~ILiVdd~~~~~~~l~~~L~~-~g~~v~-~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g 92 (241)
+++||||||++..+..+..+|.. .++.+. .+.++.+++..+... ...||+||+|+.||+++|
T Consensus 1 m~~VLivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~a~~~~~~~----------------~~~~DlvilD~~~p~~~G 64 (239)
T PRK10430 1 MINVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEQAKEIIFNS----------------DTPIDLILLDIYMQQENG 64 (239)
T ss_pred CeeEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhc----------------CCCCCEEEEecCCCCCCc
Confidence 36899999999999999999975 467654 789999999887421 123669999999999999
Q ss_pred HHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHH
Q 026239 93 YDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLM 151 (241)
Q Consensus 93 ~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~ 151 (241)
+++++.|+...+ .+|||++|+..+......+++.|+++||.||++.++|...+..+.
T Consensus 65 ~eli~~l~~~~~--~~~vI~ls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~l~~~i~~~~ 121 (239)
T PRK10430 65 LDLLPVLHEAGC--KSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 (239)
T ss_pred HHHHHHHHhhCC--CCCEEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Confidence 999999998654 899999999999999999999999999999999999987776544
No 22
>PRK11173 two-component response regulator; Provisional
Probab=99.73 E-value=1.1e-16 Score=132.86 Aligned_cols=118 Identities=23% Similarity=0.465 Sum_probs=104.3
Q ss_pred cceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHHH
Q 026239 15 QFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYD 94 (241)
Q Consensus 15 ~~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~~ 94 (241)
..+||+|||++..+..+...|+..|+.|..+.++.+++..+... .||+||+|+.||+++|++
T Consensus 3 ~~~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~------------------~~dlvild~~l~~~~g~~ 64 (237)
T PRK11173 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEN------------------DINLVIMDINLPGKNGLL 64 (237)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhhC------------------CCCEEEEcCCCCCCCHHH
Confidence 36899999999999999999999999999999999999988543 356999999999999999
Q ss_pred HHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHHHH
Q 026239 95 LLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMKT 153 (241)
Q Consensus 95 ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~~~ 153 (241)
+++.|+.. ..+|+|++|+..+......+++.||++|+.||++..+|...+..+++.
T Consensus 65 ~~~~lr~~---~~~pii~lt~~~~~~~~~~~~~~ga~d~l~kP~~~~eL~~~i~~~l~r 120 (237)
T PRK11173 65 LARELREQ---ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 (237)
T ss_pred HHHHHhcC---CCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 99999974 278999999998888888999999999999999999997665555443
No 23
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=99.73 E-value=1.5e-16 Score=130.10 Aligned_cols=120 Identities=24% Similarity=0.494 Sum_probs=105.9
Q ss_pred ceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHHHH
Q 026239 16 FHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYDL 95 (241)
Q Consensus 16 ~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~~l 95 (241)
.+||+|||++..+..+...|...|+.+..+.++.+++..+.... ||+||+|+.||+++|+++
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~------------------~d~vi~d~~~~~~~g~~~ 64 (226)
T TIGR02154 3 RRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINERG------------------PDLILLDWMLPGTSGIEL 64 (226)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHhcC------------------CCEEEEECCCCCCcHHHH
Confidence 67999999999999999999988999999999999999885443 559999999999999999
Q ss_pred HHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHHHH
Q 026239 96 LKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMKT 153 (241)
Q Consensus 96 l~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~~~ 153 (241)
++.|+.....+.+|||++|+..+......+++.||++|+.||++.++|...+..++..
T Consensus 65 ~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 122 (226)
T TIGR02154 65 CRRLRRRPETRAIPIIMLTARGEEEDRVRGLETGADDYITKPFSPRELLARIKAVLRR 122 (226)
T ss_pred HHHHHccccCCCCCEEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHhcc
Confidence 9999976434578999999999888899999999999999999999997766665543
No 24
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=99.73 E-value=1.5e-16 Score=132.07 Aligned_cols=119 Identities=21% Similarity=0.444 Sum_probs=106.0
Q ss_pred CcceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHH
Q 026239 14 SQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGY 93 (241)
Q Consensus 14 ~~~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~ 93 (241)
+..+||||||++..+..+...|...||.+..+.++.+++..+... .||+||+|+.||+++|+
T Consensus 4 ~~~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~------------------~~dlvild~~l~~~~g~ 65 (239)
T PRK09468 4 ENYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTRE------------------SFHLMVLDLMLPGEDGL 65 (239)
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC------------------CCCEEEEeCCCCCCCHH
Confidence 457899999999999999999999999999999999999988543 35699999999999999
Q ss_pred HHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHHH
Q 026239 94 DLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMK 152 (241)
Q Consensus 94 ~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~~ 152 (241)
++++.|+...+ .+|||++++..+......+++.|+++||.||++.++|...+..+++
T Consensus 66 ~~~~~lr~~~~--~~pii~ls~~~~~~~~~~~l~~Ga~~~l~kP~~~~~L~~~i~~~~~ 122 (239)
T PRK09468 66 SICRRLRSQNN--PTPIIMLTAKGEEVDRIVGLEIGADDYLPKPFNPRELLARIRAVLR 122 (239)
T ss_pred HHHHHHHhcCC--CCCEEEEECCCcHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhc
Confidence 99999997643 7999999999988888999999999999999999999776666544
No 25
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=99.72 E-value=1.9e-16 Score=129.13 Aligned_cols=117 Identities=25% Similarity=0.413 Sum_probs=104.0
Q ss_pred ceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHHHH
Q 026239 16 FHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYDL 95 (241)
Q Consensus 16 ~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~~l 95 (241)
++||+|||++..+..+...|...||.+..+.++.+++..+... .||+||+|+.||+++|+++
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~------------------~~dlvild~~l~~~~g~~~ 62 (219)
T PRK10336 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSA------------------PYDAVILDLTLPGMDGRDI 62 (219)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhC------------------CCCEEEEECCCCCCCHHHH
Confidence 4799999999999999999998899999999999999987533 3569999999999999999
Q ss_pred HHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHHH
Q 026239 96 LKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMK 152 (241)
Q Consensus 96 l~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~~ 152 (241)
++.++...+ .+|||++|+..+......+++.||++|+.||++..+|...+..+++
T Consensus 63 ~~~i~~~~~--~~~ii~lt~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~ 117 (219)
T PRK10336 63 LREWREKGQ--REPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMR 117 (219)
T ss_pred HHHHHhcCC--CCcEEEEECCCCHHHHHHHHhCCCCeEEECCCCHHHHHHHHHHHHh
Confidence 999998643 7899999999988888999999999999999999999776666544
No 26
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=99.72 E-value=2.8e-16 Score=128.72 Aligned_cols=116 Identities=22% Similarity=0.439 Sum_probs=103.4
Q ss_pred ceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHHHH
Q 026239 16 FHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYDL 95 (241)
Q Consensus 16 ~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~~l 95 (241)
++||+|||+...+..+...|...||.|..+.++.+++..+... .||+||+|+.||+++|+++
T Consensus 3 ~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~------------------~~dlvild~~l~~~~g~~~ 64 (221)
T PRK10766 3 YHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIMQNQ------------------HVDLILLDINLPGEDGLML 64 (221)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcC------------------CCCEEEEeCCCCCCCHHHH
Confidence 6899999999999999999999999999999999999988543 3569999999999999999
Q ss_pred HHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHHH
Q 026239 96 LKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMK 152 (241)
Q Consensus 96 l~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~~ 152 (241)
++.++.. ..+|+|++++..+......+++.||++|+.||++..+|...+..+++
T Consensus 65 ~~~lr~~---~~~~ii~l~~~~~~~~~~~~l~~Ga~d~l~kP~~~~~L~~~i~~~~~ 118 (221)
T PRK10766 65 TRELRSR---STVGIILVTGRTDSIDRIVGLEMGADDYVTKPLELRELLVRVKNLLW 118 (221)
T ss_pred HHHHHhC---CCCCEEEEECCCcHHHHHHHHHcCCCcEEeCCCCHHHHHHHHHHHHh
Confidence 9999974 27899999999988888999999999999999999998766655543
No 27
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=99.72 E-value=1.4e-16 Score=156.22 Aligned_cols=118 Identities=31% Similarity=0.557 Sum_probs=107.4
Q ss_pred CcceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHH
Q 026239 14 SQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGY 93 (241)
Q Consensus 14 ~~~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~ 93 (241)
..++||||||++..+..+...|+..||.|..+.++.+|++.+... .||+||+|+.||+|+|+
T Consensus 800 ~~~~ILvVdD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~~~------------------~~DlVl~D~~mP~mdG~ 861 (924)
T PRK10841 800 DDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKN------------------HIDIVLTDVNMPNMDGY 861 (924)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhC------------------CCCEEEEcCCCCCCCHH
Confidence 457999999999999999999999999999999999999998644 35699999999999999
Q ss_pred HHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHH
Q 026239 94 DLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLM 151 (241)
Q Consensus 94 ~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~ 151 (241)
++++.|++... .+|||++|+....+...+|+++|+++||.||++..+|..++..+.
T Consensus 862 el~~~ir~~~~--~~pII~lTa~~~~~~~~~~~~aG~d~~L~KPv~~~~L~~~L~~~~ 917 (924)
T PRK10841 862 RLTQRLRQLGL--TLPVIGVTANALAEEKQRCLEAGMDSCLSKPVTLDVLKQTLTVYA 917 (924)
T ss_pred HHHHHHHhcCC--CCCEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHH
Confidence 99999998754 799999999999999999999999999999999999987766553
No 28
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=99.71 E-value=1.3e-16 Score=156.38 Aligned_cols=120 Identities=26% Similarity=0.420 Sum_probs=108.3
Q ss_pred CcceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHH
Q 026239 14 SQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGY 93 (241)
Q Consensus 14 ~~~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~ 93 (241)
..++||||||++..+..+..+|...|+.|..+.++.+|++.+... .||+||+|+.||+++|+
T Consensus 666 ~~~~vLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~~~~~------------------~~dlil~D~~mp~~~g~ 727 (919)
T PRK11107 666 LPLTVMAVDDNPANLKLIGALLEEQVEHVVLCDSGHQAVEQAKQR------------------PFDLILMDIQMPGMDGI 727 (919)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhC------------------CCCEEEEeCCCCCCcHH
Confidence 357999999999999999999999999999999999999998544 46699999999999999
Q ss_pred HHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHH
Q 026239 94 DLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLM 151 (241)
Q Consensus 94 ~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~ 151 (241)
++++.|+......++|||++|+........+|++.|+++||.||++..+|...+..+.
T Consensus 728 ~~~~~lr~~~~~~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~ 785 (919)
T PRK11107 728 RACELIRQLPHNQNTPIIAVTAHAMAGERERLLSAGMDDYLAKPIDEAMLKQVLLRYK 785 (919)
T ss_pred HHHHHHHhcccCCCCCEEEEeCCCCHHHHHHHHHcCCCeEeeCCCCHHHHHHHHHHHc
Confidence 9999999865556899999999999999999999999999999999999977766554
No 29
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=99.71 E-value=4.1e-16 Score=128.25 Aligned_cols=117 Identities=21% Similarity=0.326 Sum_probs=103.6
Q ss_pred eEEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCC--CCHHH
Q 026239 17 HVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPG--MTGYD 94 (241)
Q Consensus 17 ~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~--~~g~~ 94 (241)
+||+|||+...+..+...|...||.+..+.++.+++..+.... ||+||+|+.||+ .+|++
T Consensus 2 ~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~------------------~dlvild~~l~~~~~~g~~ 63 (227)
T TIGR03787 2 RIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAFRQRL------------------PDLAIIDIGLGEEIDGGFM 63 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHHhCC------------------CCEEEEECCCCCCCCCHHH
Confidence 6999999999999999999988999999999999999885443 559999999998 58999
Q ss_pred HHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHHHH
Q 026239 95 LLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMKT 153 (241)
Q Consensus 95 ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~~~ 153 (241)
+++.++...+ .+|||++|+..+......++++||++|+.||++..+|...+..++++
T Consensus 64 ~~~~i~~~~~--~~pii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 120 (227)
T TIGR03787 64 LCQDLRSLSA--TLPIIFLTARDSDFDTVSGLRLGADDYLTKDISLPHLLARITALFRR 120 (227)
T ss_pred HHHHHHhcCC--CCCEEEEECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 9999997643 78999999999999999999999999999999999998777666543
No 30
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=99.71 E-value=3.9e-16 Score=129.81 Aligned_cols=116 Identities=22% Similarity=0.276 Sum_probs=102.2
Q ss_pred ceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHHHH
Q 026239 16 FHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYDL 95 (241)
Q Consensus 16 ~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~~l 95 (241)
.+||+|||++..+..+...|...||.+..+.++.+++..+.... ||+||+|+.||+++|+++
T Consensus 2 ~~iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~~~------------------~dlvild~~l~~~~g~~~ 63 (240)
T PRK10701 2 NKIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATILREQ------------------PDLVLLDIMLPGKDGMTI 63 (240)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHhhCC------------------CCEEEEeCCCCCCCHHHH
Confidence 48999999999999999999999999999999999999885443 569999999999999999
Q ss_pred HHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHHH
Q 026239 96 LKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMK 152 (241)
Q Consensus 96 l~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~~ 152 (241)
++.|+... .+|+|++++.........+++.|+++|+.||++..+|...+..+++
T Consensus 64 ~~~ir~~~---~~pii~l~~~~~~~~~~~~~~~Ga~d~l~kP~~~~~l~~~i~~~l~ 117 (240)
T PRK10701 64 CRDLRPKW---QGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLR 117 (240)
T ss_pred HHHHHhcC---CCCEEEEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHh
Confidence 99999742 6799999998888888899999999999999999998766555443
No 31
>CHL00148 orf27 Ycf27; Reviewed
Probab=99.71 E-value=4.8e-16 Score=128.68 Aligned_cols=119 Identities=29% Similarity=0.509 Sum_probs=105.0
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCH
Q 026239 13 ESQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTG 92 (241)
Q Consensus 13 ~~~~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g 92 (241)
.+.++||+|||++..+..+...|...||.+..+.++.+++..+.... ||+||+|+.||+++|
T Consensus 4 ~~~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~~~~~------------------~d~illd~~~~~~~g 65 (240)
T CHL00148 4 NSKEKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFRKEQ------------------PDLVILDVMMPKLDG 65 (240)
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhcC------------------CCEEEEeCCCCCCCH
Confidence 34689999999999999999999988999999999999999875433 569999999999999
Q ss_pred HHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHHH
Q 026239 93 YDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMK 152 (241)
Q Consensus 93 ~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~~ 152 (241)
+++++.++.. ..+|+|++|+..+......+++.||++|+.||++..+|...+..+.+
T Consensus 66 ~~~~~~l~~~---~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~ 122 (240)
T CHL00148 66 YGVCQEIRKE---SDVPIIMLTALGDVSDRITGLELGADDYVVKPFSPKELEARIRSVLR 122 (240)
T ss_pred HHHHHHHHhc---CCCcEEEEECCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 9999999974 37999999999888888999999999999999999999776665543
No 32
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=99.71 E-value=3.9e-16 Score=127.95 Aligned_cols=118 Identities=21% Similarity=0.362 Sum_probs=104.1
Q ss_pred cceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHHH
Q 026239 15 QFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYD 94 (241)
Q Consensus 15 ~~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~~ 94 (241)
+++||||||++..+..+...|...||.+..+.++.+++..+.... ||+||+|+.||+.+|++
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~------------------~dlvl~d~~~~~~~g~~ 64 (228)
T PRK11083 3 QPTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQQP------------------PDLVILDVGLPDISGFE 64 (228)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhcCC------------------CCEEEEeCCCCCCCHHH
Confidence 468999999999999999999988999999999999999875433 56999999999999999
Q ss_pred HHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHHH
Q 026239 95 LLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMK 152 (241)
Q Consensus 95 ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~~ 152 (241)
+++.|+...+ .+|||++|+..+......+++.||++|+.||++..+|...+..+++
T Consensus 65 ~~~~l~~~~~--~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 120 (228)
T PRK11083 65 LCRQLLAFHP--ALPVIFLTARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILR 120 (228)
T ss_pred HHHHHHhhCC--CCCEEEEEcCCcHHHHHHHhhcCCCeEEECCCCHHHHHHHHHHHHC
Confidence 9999998653 7999999999888888899999999999999999998776655443
No 33
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=99.71 E-value=3.2e-16 Score=128.87 Aligned_cols=119 Identities=26% Similarity=0.361 Sum_probs=103.7
Q ss_pred cceEEEEeCCHHHHHHHHHHhhcCCC-E-EEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCC---
Q 026239 15 QFHVLAVDDSIIDRKLIERLLKTSSY-Q-VTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPG--- 89 (241)
Q Consensus 15 ~~~ILiVdd~~~~~~~l~~~L~~~g~-~-v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~--- 89 (241)
.++||||||++..+..+...|...++ . +..+.++.+++..+.... ||+||+|+.||+
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~------------------~DlvllD~~l~~~~~ 64 (216)
T PRK10840 3 NMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLD------------------AHVLITDLSMPGDKY 64 (216)
T ss_pred ceEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhCC------------------CCEEEEeCcCCCCCC
Confidence 47999999999999999999987664 4 557899999999885443 559999999999
Q ss_pred CCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHHHH
Q 026239 90 MTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMKT 153 (241)
Q Consensus 90 ~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~~~ 153 (241)
++|++++++|+...+ .+|||++|+..+......+++.|+++|+.||++.++|...+..+..+
T Consensus 65 ~~g~~~~~~l~~~~~--~~~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v~~g 126 (216)
T PRK10840 65 GDGITLIKYIKRHFP--SLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKG 126 (216)
T ss_pred CCHHHHHHHHHHHCC--CCcEEEEEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHHHCC
Confidence 599999999997644 79999999999999999999999999999999999998887777654
No 34
>PRK13856 two-component response regulator VirG; Provisional
Probab=99.70 E-value=5.2e-16 Score=129.40 Aligned_cols=116 Identities=25% Similarity=0.420 Sum_probs=100.5
Q ss_pred ceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHHHH
Q 026239 16 FHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYDL 95 (241)
Q Consensus 16 ~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~~l 95 (241)
.+||+|||++..+..+...|...||.|..+.++.++++.+.... ||+||+|+.||+++|+++
T Consensus 2 ~~ILived~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~------------------~dlvi~d~~l~~~~g~~l 63 (241)
T PRK13856 2 KHVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLASET------------------VDVVVVDLNLGREDGLEI 63 (241)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhhCC------------------CCEEEEeCCCCCCCHHHH
Confidence 37999999999999999999999999999999999999885443 569999999999999999
Q ss_pred HHHHHhcCCCCCCcEEEEccC-CChHHHHHHHHhcccccccCCCCHHHHHHhhHHHHH
Q 026239 96 LKKIKESSSLRDIPVVIMSSE-NVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMK 152 (241)
Q Consensus 96 l~~ir~~~~~~~ipvIils~~-~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~~ 152 (241)
++.++... .+|+|++|+. .+......+++.||++|+.||++..+|...+..+++
T Consensus 64 ~~~i~~~~---~~pii~lt~~~~~~~~~~~~l~~Ga~~yl~kP~~~~eL~~~i~~~l~ 118 (241)
T PRK13856 64 VRSLATKS---DVPIIIISGDRLEEADKVVALELGATDFIAKPFGTREFLARIRVALR 118 (241)
T ss_pred HHHHHhcC---CCcEEEEECCCCcHHHHHHHHhcCcCeEEeCCCCHHHHHHHHHHHHh
Confidence 99998742 6899999985 456667789999999999999999998766555543
No 35
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=99.70 E-value=5.3e-16 Score=127.78 Aligned_cols=115 Identities=25% Similarity=0.450 Sum_probs=102.1
Q ss_pred ceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHHHH
Q 026239 16 FHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYDL 95 (241)
Q Consensus 16 ~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~~l 95 (241)
.+||+|||++..+..+...|...|+.+..+.++.+++..+.. .||+||+|+.||+++|+++
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-------------------~~d~vl~d~~~~~~~g~~~ 62 (232)
T PRK10955 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-------------------SIDLLLLDVMMPKKNGIDT 62 (232)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHhhc-------------------CCCEEEEeCCCCCCcHHHH
Confidence 489999999999999999999889999999999999997742 2569999999999999999
Q ss_pred HHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHHH
Q 026239 96 LKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMK 152 (241)
Q Consensus 96 l~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~~ 152 (241)
++.|+... .+|||++|+..+......+++.|+++|+.||++.++|...+..+.+
T Consensus 63 ~~~l~~~~---~~~ii~lt~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~ 116 (232)
T PRK10955 63 LKELRQTH---QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 (232)
T ss_pred HHHHHhcC---CCcEEEEECCCCHHHHHHHHHcCCCEEEcCCCCHHHHHHHHHHHHh
Confidence 99999754 3899999998888888999999999999999999999776665544
No 36
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=99.70 E-value=2.1e-16 Score=155.05 Aligned_cols=120 Identities=19% Similarity=0.323 Sum_probs=107.5
Q ss_pred CcceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHH
Q 026239 14 SQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGY 93 (241)
Q Consensus 14 ~~~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~ 93 (241)
...+||||||++..+..+..+|...||.|..+.++.+|++.+... ..||+||+|+.||+++|+
T Consensus 680 ~~~~vLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~-----------------~~~Dlvl~D~~mp~~~G~ 742 (914)
T PRK11466 680 DGLRLLLIEDNPLTQRITAEMLNTSGAQVVAVGNAAQALETLQNS-----------------EPFAAALVDFDLPDYDGI 742 (914)
T ss_pred CCcceEEEeCCHHHHHHHHHHHHhcCCceEEeCCHHHHHHHHHcC-----------------CCCCEEEEeCCCCCCCHH
Confidence 357899999999999999999999999999999999999987421 236799999999999999
Q ss_pred HHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHHH
Q 026239 94 DLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMK 152 (241)
Q Consensus 94 ~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~~ 152 (241)
++++.|+...+ ++|||++|+........+++..|+++||.||++.++|...+.+++.
T Consensus 743 ~~~~~lr~~~~--~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~ 799 (914)
T PRK11466 743 TLARQLAQQYP--SLVLIGFSAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYLQ 799 (914)
T ss_pred HHHHHHHhhCC--CCCEEEEeCCCchhhHHHHHhcCcCCEEeCCCCHHHHHHHHHHHhh
Confidence 99999998644 8999999999998999999999999999999999999887777653
No 37
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=99.70 E-value=5.6e-16 Score=126.85 Aligned_cols=115 Identities=22% Similarity=0.466 Sum_probs=102.6
Q ss_pred ceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHHHH
Q 026239 16 FHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYDL 95 (241)
Q Consensus 16 ~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~~l 95 (241)
++||+|||++..+..+...|...|+.+..+.++.+++..+... .||+||+|+.||+++|+++
T Consensus 1 m~iliv~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~l~~~~~~------------------~~dlvi~d~~~~~~~g~~~ 62 (223)
T PRK11517 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKD------------------DYALIILDIMLPGMDGWQI 62 (223)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC------------------CCCEEEEECCCCCCCHHHH
Confidence 4799999999999999999998999999999999999988543 3569999999999999999
Q ss_pred HHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHH
Q 026239 96 LKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLM 151 (241)
Q Consensus 96 l~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~ 151 (241)
++.++... .+|||++|+..+......+++.||++|+.||++..+|...+..++
T Consensus 63 ~~~l~~~~---~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~ 115 (223)
T PRK11517 63 LQTLRTAK---QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQL 115 (223)
T ss_pred HHHHHcCC---CCCEEEEECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHH
Confidence 99999742 689999999999999999999999999999999999876665544
No 38
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.70 E-value=5.3e-16 Score=140.12 Aligned_cols=119 Identities=21% Similarity=0.368 Sum_probs=104.1
Q ss_pred CcceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHH
Q 026239 14 SQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGY 93 (241)
Q Consensus 14 ~~~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~ 93 (241)
...+||+|||++..+..+..+|.. .+.+..+.++.+|+..+... .||+||+|+.||+++|+
T Consensus 154 ~~~~vlivdd~~~~~~~l~~~l~~-~~~~~~~~~~~~a~~~~~~~------------------~~d~vi~d~~~p~~~g~ 214 (457)
T PRK09581 154 EDGRILLVDDDVSQAERIANILKE-EFRVVVVSDPSEALFNAAET------------------NYDLVIVSANFENYDPL 214 (457)
T ss_pred cCceEEEEecccchHHHHHHHHhh-cceeeeecChHHHHHhcccC------------------CCCEEEecCCCCCchHh
Confidence 468899999999999999999964 57777899999999987544 45699999999999999
Q ss_pred HHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHH
Q 026239 94 DLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLM 151 (241)
Q Consensus 94 ~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~ 151 (241)
++++.+++....+++|||++|+..+......|++.||+||+.||+++++|...+....
T Consensus 215 ~l~~~i~~~~~~~~~~ii~ls~~~~~~~~~~a~~~Ga~d~l~kp~~~~~l~~~i~~~~ 272 (457)
T PRK09581 215 RLCSQLRSKERTRYVPILLLVDEDDDPRLVKALELGVNDYLMRPIDKNELLARVRTQI 272 (457)
T ss_pred HHHHHHHhccccCCCcEEEEeCCCChHHHHHHHHccchhhhhCCCcHHHHHHHHHHHH
Confidence 9999999765456899999999999999999999999999999999999976554433
No 39
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=99.69 E-value=3.8e-16 Score=153.13 Aligned_cols=119 Identities=31% Similarity=0.496 Sum_probs=106.0
Q ss_pred cceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHHH
Q 026239 15 QFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYD 94 (241)
Q Consensus 15 ~~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~~ 94 (241)
.++||||||++..+..+...|...||.|..+.++.+|++.+... .||+||+|+.||+++|++
T Consensus 690 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~------------------~~dlil~D~~mp~~~G~~ 751 (921)
T PRK15347 690 QLQILLVDDVETNRDIIGMMLVELGQQVTTAASGTEALELGRQH------------------RFDLVLMDIRMPGLDGLE 751 (921)
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcC------------------CCCEEEEeCCCCCCCHHH
Confidence 47899999999999999999999999999999999999998544 356999999999999999
Q ss_pred HHHHHHhcC--CCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHH
Q 026239 95 LLKKIKESS--SLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLM 151 (241)
Q Consensus 95 ll~~ir~~~--~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~ 151 (241)
+++.||... ..+.+|||++|+..+.....++++.|+++||.||++..+|...+..+.
T Consensus 752 ~~~~ir~~~~~~~~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~ 810 (921)
T PRK15347 752 TTQLWRDDPNNLDPDCMIVALTANAAPEEIHRCKKAGMNHYLTKPVTLAQLARALELAA 810 (921)
T ss_pred HHHHHHhchhhcCCCCcEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Confidence 999999742 124799999999999999999999999999999999999977666543
No 40
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=99.69 E-value=7.7e-16 Score=124.46 Aligned_cols=118 Identities=19% Similarity=0.319 Sum_probs=104.7
Q ss_pred ceEEEEeCCHHHHHHHHHHhhcCCCEEE-EECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHHH
Q 026239 16 FHVLAVDDSIIDRKLIERLLKTSSYQVT-TVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYD 94 (241)
Q Consensus 16 ~~ILiVdd~~~~~~~l~~~L~~~g~~v~-~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~~ 94 (241)
++||+|||++..+..+...|+..|+.+. .+.++.+++..+.... ||+||+|+.+|+++|++
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~------------------~dlvi~d~~~~~~~g~~ 62 (204)
T PRK09958 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLK------------------PDIVIIDVDIPGVNGIQ 62 (204)
T ss_pred CcEEEECCcHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHccC------------------CCEEEEeCCCCCCCHHH
Confidence 4799999999999999999998899987 6899999999886443 55999999999999999
Q ss_pred HHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHHHH
Q 026239 95 LLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMKT 153 (241)
Q Consensus 95 ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~~~ 153 (241)
+++.++...+ ..|+|++|+..+......++..|+++|+.||++.++|...+..+..+
T Consensus 63 ~~~~l~~~~~--~~~ii~ls~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~ 119 (204)
T PRK09958 63 VLETLRKRQY--SGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 (204)
T ss_pred HHHHHHhhCC--CCeEEEEeCCCCHHHHHHHHHCCCCEEEecCCCHHHHHHHHHHHHcC
Confidence 9999998654 68999999998888999999999999999999999998877776543
No 41
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=99.69 E-value=9.6e-16 Score=129.67 Aligned_cols=119 Identities=24% Similarity=0.355 Sum_probs=102.4
Q ss_pred cceEEEEeCCHHHHHHHHHHhhcC-CCEEE-EECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCH
Q 026239 15 QFHVLAVDDSIIDRKLIERLLKTS-SYQVT-TVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTG 92 (241)
Q Consensus 15 ~~~ILiVdd~~~~~~~l~~~L~~~-g~~v~-~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g 92 (241)
+++||+|||++..+..+...|... ++.+. .+.++.++++.+.... ||+||+|+.||+++|
T Consensus 2 ~~~vLivdd~~~~~~~l~~~L~~~~~~~~~~~a~~~~eal~~l~~~~------------------~DlvllD~~mp~~dG 63 (262)
T TIGR02875 2 KIRIVIADDNKEFCNLLKEYLAAQPDMEVVGVAHNGVDALELIKEQQ------------------PDVVVLDIIMPHLDG 63 (262)
T ss_pred CcEEEEEcCCHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHhcC------------------CCEEEEeCCCCCCCH
Confidence 579999999999999999999754 55554 7899999999986544 559999999999999
Q ss_pred HHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHH
Q 026239 93 YDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLM 151 (241)
Q Consensus 93 ~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~ 151 (241)
+++++.++.......+|||++|+.........+++.|+++|+.||++.++|...+..+.
T Consensus 64 ~~~l~~i~~~~~~~~~~iI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~~ 122 (262)
T TIGR02875 64 IGVLEKLNEIELSARPRVIMLSAFGQEKITQRAVALGADYYVLKPFDLEILAARIRQLA 122 (262)
T ss_pred HHHHHHHHhhccccCCeEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Confidence 99999999876534589999999998888899999999999999999999877665554
No 42
>PRK15115 response regulator GlrR; Provisional
Probab=99.69 E-value=8.5e-16 Score=139.58 Aligned_cols=119 Identities=30% Similarity=0.441 Sum_probs=106.3
Q ss_pred CcceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHH
Q 026239 14 SQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGY 93 (241)
Q Consensus 14 ~~~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~ 93 (241)
...+||||||++..+..+...|...||.|..+.++.+|+..+.... ||+||+|+.||+++|+
T Consensus 4 ~~~~vLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~eal~~l~~~~------------------~dlvilD~~lp~~~g~ 65 (444)
T PRK15115 4 KPAHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVLNREK------------------VDLVISDLRMDEMDGM 65 (444)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCC------------------CCEEEEcCCCCCCCHH
Confidence 3589999999999999999999999999999999999999885443 5699999999999999
Q ss_pred HHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHHH
Q 026239 94 DLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMK 152 (241)
Q Consensus 94 ~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~~ 152 (241)
++++.++...+ .+|||++|+..+......+++.|+++||.||++..+|...+..++.
T Consensus 66 ~ll~~l~~~~~--~~pvIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~l~~~~~ 122 (444)
T PRK15115 66 QLFAEIQKVQP--GMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDRDALYKAIDDALE 122 (444)
T ss_pred HHHHHHHhcCC--CCcEEEEECCCCHHHHHHHHhcChhhhccCCCCHHHHHHHHHHHHH
Confidence 99999997654 7999999999988889999999999999999999998776665543
No 43
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.69 E-value=1.1e-15 Score=138.64 Aligned_cols=120 Identities=29% Similarity=0.473 Sum_probs=106.9
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCH
Q 026239 13 ESQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTG 92 (241)
Q Consensus 13 ~~~~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g 92 (241)
...++||||||++..+..+...|...||.|..+.++.+++..+... .||+||+|+.||+++|
T Consensus 3 ~~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~------------------~~DlvilD~~m~~~~G 64 (441)
T PRK10365 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQ------------------VFDLVLCDVRMAEMDG 64 (441)
T ss_pred CCcceEEEEECCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHhcC------------------CCCEEEEeCCCCCCCH
Confidence 3468999999999999999999999999999999999999988543 3569999999999999
Q ss_pred HHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHHH
Q 026239 93 YDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMK 152 (241)
Q Consensus 93 ~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~~ 152 (241)
+++++.++...+ .+|||++|+..+......+++.|+.+||.||++.+.|...+...+.
T Consensus 65 ~~~~~~ir~~~~--~~~vi~lt~~~~~~~~~~a~~~ga~~~l~Kp~~~~~L~~~l~~~l~ 122 (441)
T PRK10365 65 IATLKEIKALNP--AIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 (441)
T ss_pred HHHHHHHHhhCC--CCeEEEEECCCCHHHHHHHHHhhhHHHhcCCCCHHHHHHHHHHHHH
Confidence 999999998654 8999999999888999999999999999999999998776665544
No 44
>PRK09483 response regulator; Provisional
Probab=99.68 E-value=1.3e-15 Score=124.31 Aligned_cols=119 Identities=21% Similarity=0.363 Sum_probs=105.1
Q ss_pred cceEEEEeCCHHHHHHHHHHhhcC-CCEEE-EECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCH
Q 026239 15 QFHVLAVDDSIIDRKLIERLLKTS-SYQVT-TVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTG 92 (241)
Q Consensus 15 ~~~ILiVdd~~~~~~~l~~~L~~~-g~~v~-~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g 92 (241)
+++||||||++..+..+..+|... |+.+. .++++.+++..+.... ||+||+|+.+|+++|
T Consensus 1 m~~ilivd~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~------------------~dlvi~d~~~~~~~g 62 (217)
T PRK09483 1 MINVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCRTNA------------------VDVVLMDMNMPGIGG 62 (217)
T ss_pred CeEEEEECCcHHHHHHHHHHHccCCCCEEEEEeCCHHHHHHHHHhcC------------------CCEEEEeCCCCCCCH
Confidence 468999999999999999999874 78876 7899999999886443 559999999999999
Q ss_pred HHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHHHH
Q 026239 93 YDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMKT 153 (241)
Q Consensus 93 ~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~~~ 153 (241)
+++++.++...+ .+|+|++|...+......++..|+++|+.||++.++|...+..+..+
T Consensus 63 ~~~~~~l~~~~~--~~~ii~ls~~~~~~~~~~~~~~g~~~~l~k~~~~~~l~~~i~~~~~g 121 (217)
T PRK09483 63 LEATRKILRYTP--DVKIIMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVHSG 121 (217)
T ss_pred HHHHHHHHHHCC--CCeEEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 999999987654 79999999999888999999999999999999999998887777654
No 45
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=99.68 E-value=6.2e-16 Score=152.45 Aligned_cols=120 Identities=23% Similarity=0.399 Sum_probs=107.8
Q ss_pred cceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHHH
Q 026239 15 QFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYD 94 (241)
Q Consensus 15 ~~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~~ 94 (241)
..+||||||++..+..+..+|+..||.|..+.++.+|++.+... .||+||+|+.||+++|++
T Consensus 702 ~~~iLvvdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~------------------~~dlvl~D~~mp~~~g~~ 763 (968)
T TIGR02956 702 PQRVLLVEDNEVNQMVAQGFLTRLGHKVTLAESGQSALECFHQH------------------AFDLALLDINLPDGDGVT 763 (968)
T ss_pred ccceEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHCC------------------CCCEEEECCCCCCCCHHH
Confidence 46899999999999999999999999999999999999999643 466999999999999999
Q ss_pred HHHHHHhcCCCCC-CcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHHH
Q 026239 95 LLKKIKESSSLRD-IPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMK 152 (241)
Q Consensus 95 ll~~ir~~~~~~~-ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~~ 152 (241)
+++.|+....... +|||++|+....+....+++.|+++||.||++..+|...+..++.
T Consensus 764 ~~~~ir~~~~~~~~~pii~lta~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 822 (968)
T TIGR02956 764 LLQQLRAIYGAKNEVKFIAFSAHVFNEDVAQYLAAGFDGFLAKPVVEEQLTAMIAVILA 822 (968)
T ss_pred HHHHHHhCccccCCCeEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 9999998655333 899999999999999999999999999999999999887776653
No 46
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=99.68 E-value=1.5e-15 Score=123.67 Aligned_cols=115 Identities=24% Similarity=0.501 Sum_probs=102.2
Q ss_pred EEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHHHHHH
Q 026239 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYDLLK 97 (241)
Q Consensus 18 ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~~ll~ 97 (241)
||++||++..+..+...|...|+.+..+.++.+++..+... .||+||+|+.||+++|+++++
T Consensus 1 iliidd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~------------------~~dlvl~d~~~~~~~g~~~~~ 62 (218)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLALKD------------------DYDLIILDVMLPGMDGWQILQ 62 (218)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC------------------CCCEEEEeCCCCCCCHHHHHH
Confidence 58999999999999999998999999999999999988543 356999999999999999999
Q ss_pred HHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHHH
Q 026239 98 KIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMK 152 (241)
Q Consensus 98 ~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~~ 152 (241)
.++...+ ++|||++|+..+......++.+|+++|+.||++..+|...+..++.
T Consensus 63 ~l~~~~~--~~~iivls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 115 (218)
T TIGR01387 63 TLRRSGK--QTPVLFLTARDSVADKVKGLDLGADDYLVKPFSFSELLARVRTLLR 115 (218)
T ss_pred HHHccCC--CCcEEEEEcCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhc
Confidence 9997654 7899999999999999999999999999999999998766655543
No 47
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.67 E-value=2.4e-15 Score=137.62 Aligned_cols=119 Identities=29% Similarity=0.440 Sum_probs=106.8
Q ss_pred cceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHHH
Q 026239 15 QFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYD 94 (241)
Q Consensus 15 ~~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~~ 94 (241)
..+||||||++..+..+...|...||.|..+.++.+|+..+... .||+||+|+.||+++|++
T Consensus 3 ~~~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al~~l~~~------------------~~DlvllD~~lp~~dgl~ 64 (469)
T PRK10923 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALASK------------------TPDVLLSDIRMPGMDGLA 64 (469)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcC------------------CCCEEEECCCCCCCCHHH
Confidence 36899999999999999999999999999999999999998543 356999999999999999
Q ss_pred HHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHHHH
Q 026239 95 LLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMKT 153 (241)
Q Consensus 95 ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~~~ 153 (241)
+++.|+...+ .+|||++|+..+......+++.|+++||.||++.++|...+.+++..
T Consensus 65 ~l~~ir~~~~--~~pvIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 121 (469)
T PRK10923 65 LLKQIKQRHP--MLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 (469)
T ss_pred HHHHHHhhCC--CCeEEEEECCCCHHHHHHHHhcCcceEEecCCcHHHHHHHHHHHHHH
Confidence 9999998654 78999999999999999999999999999999999998777666543
No 48
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=99.67 E-value=1.1e-15 Score=147.73 Aligned_cols=119 Identities=22% Similarity=0.419 Sum_probs=103.1
Q ss_pred CcceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHH
Q 026239 14 SQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGY 93 (241)
Q Consensus 14 ~~~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~ 93 (241)
..++||||||++..+..+..+|+..||.|..+.++.+|++.+... .||+||+|+.||+++|+
T Consensus 524 ~~~~ILivdD~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~------------------~~Dlvl~D~~mp~~~G~ 585 (779)
T PRK11091 524 PALNILLVEDIELNVIVARSVLEKLGNSVDVAMTGKEALEMFDPD------------------EYDLVLLDIQLPDMTGL 585 (779)
T ss_pred cccceEEEcCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhcC------------------CCCEEEEcCCCCCCCHH
Confidence 458999999999999999999999999999999999999998543 36699999999999999
Q ss_pred HHHHHHHhcCCCCC-CcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHH
Q 026239 94 DLLKKIKESSSLRD-IPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLM 151 (241)
Q Consensus 94 ~ll~~ir~~~~~~~-ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~ 151 (241)
++++.|+....... +|||++|+.... ....+++.|+++||.||++..+|...+.+++
T Consensus 586 e~~~~ir~~~~~~~~~~ii~~ta~~~~-~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~ 643 (779)
T PRK11091 586 DIARELRERYPREDLPPLVALTANVLK-DKKEYLDAGMDDVLSKPLSVPALTAMIKKFW 643 (779)
T ss_pred HHHHHHHhccccCCCCcEEEEECCchH-hHHHHHHCCCCEEEECCCCHHHHHHHHHHHh
Confidence 99999998754345 488888887654 4578999999999999999999987776654
No 49
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.66 E-value=2.1e-15 Score=137.43 Aligned_cols=117 Identities=23% Similarity=0.411 Sum_probs=105.4
Q ss_pred cceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHHH
Q 026239 15 QFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYD 94 (241)
Q Consensus 15 ~~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~~ 94 (241)
..+||||||++..+..+...|...||.|..+.++.+++..+.... ||+||+|+.||+++|++
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~------------------~dlillD~~~p~~~g~~ 65 (457)
T PRK11361 4 INRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIH------------------PDVVLMDIRMPEMDGIK 65 (457)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCC------------------CCEEEEeCCCCCCCHHH
Confidence 578999999999999999999999999999999999999885443 56999999999999999
Q ss_pred HHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHH
Q 026239 95 LLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLM 151 (241)
Q Consensus 95 ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~ 151 (241)
+++.++...+ .+|||++|+..+......+++.|+++|+.||++.++|...+..++
T Consensus 66 ll~~i~~~~~--~~pvI~lt~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~l 120 (457)
T PRK11361 66 ALKEMRSHET--RTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRAL 120 (457)
T ss_pred HHHHHHhcCC--CCCEEEEeCCCCHHHHHHHHHCCccEEEecccCHHHHHHHHhhhc
Confidence 9999997654 899999999999999999999999999999999999877666554
No 50
>PRK14084 two-component response regulator; Provisional
Probab=99.65 E-value=4.2e-15 Score=124.40 Aligned_cols=114 Identities=18% Similarity=0.339 Sum_probs=96.2
Q ss_pred ceEEEEeCCHHHHHHHHHHhhcCC-C-EEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHH
Q 026239 16 FHVLAVDDSIIDRKLIERLLKTSS-Y-QVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGY 93 (241)
Q Consensus 16 ~~ILiVdd~~~~~~~l~~~L~~~g-~-~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~ 93 (241)
++||||||++..+..+..+|...+ + .+..+.++.+++..+... .||+||+|+.||+++|+
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~l~~~~~~------------------~~dlv~lDi~m~~~~G~ 62 (246)
T PRK14084 1 MKALIVDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALLIN------------------QYDIIFLDINLMDESGI 62 (246)
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHHhc------------------CCCEEEEeCCCCCCCHH
Confidence 579999999999999999998765 4 466899999999988543 35699999999999999
Q ss_pred HHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHH
Q 026239 94 DLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLM 151 (241)
Q Consensus 94 ~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~ 151 (241)
++++.|+.... ..+||++|+.. ....++++.|+.+||.||++.++|...+..+.
T Consensus 63 ~~~~~i~~~~~--~~~iI~~t~~~--~~~~~~~~~~~~~yl~KP~~~~~l~~~l~~~~ 116 (246)
T PRK14084 63 ELAAKIQKMKE--PPAIIFATAHD--QFAVKAFELNATDYILKPFEQKRIEQAVNKVR 116 (246)
T ss_pred HHHHHHHhcCC--CCEEEEEecCh--HHHHHHHhcCCcEEEECCCCHHHHHHHHHHHH
Confidence 99999998654 66788888764 45678999999999999999999887776654
No 51
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=99.65 E-value=4.5e-15 Score=119.20 Aligned_cols=116 Identities=27% Similarity=0.423 Sum_probs=100.4
Q ss_pred cceEEEEeCCHHHHHHHHHHhhcC-CCE-EEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCH
Q 026239 15 QFHVLAVDDSIIDRKLIERLLKTS-SYQ-VTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTG 92 (241)
Q Consensus 15 ~~~ILiVdd~~~~~~~l~~~L~~~-g~~-v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g 92 (241)
+++||||||++..+..+...|... ++. +..++++.+++..+... .||+||+|+.+|+++|
T Consensus 1 m~~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~~~~------------------~~dlvi~d~~~~~~~g 62 (196)
T PRK10360 1 MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGR------------------GVQVCICDISMPDISG 62 (196)
T ss_pred CeEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHhcC------------------CCCEEEEeCCCCCCCH
Confidence 368999999999999999999754 565 45889999999988543 3569999999999999
Q ss_pred HHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHHHH
Q 026239 93 YDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMKT 153 (241)
Q Consensus 93 ~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~~~ 153 (241)
+++++.++. .+|||++|+.........+++.|+++|+.||++.++|...+..+..+
T Consensus 63 ~~~~~~l~~-----~~~vi~~s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~ 118 (196)
T PRK10360 63 LELLSQLPK-----GMATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATG 118 (196)
T ss_pred HHHHHHHcc-----CCCEEEEECCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcC
Confidence 999999863 57999999999899999999999999999999999998877776643
No 52
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=99.64 E-value=7.6e-15 Score=118.79 Aligned_cols=119 Identities=27% Similarity=0.399 Sum_probs=103.3
Q ss_pred cceEEEEeCCHHHHHHHHHHhhcC-CCEEE-EECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCH
Q 026239 15 QFHVLAVDDSIIDRKLIERLLKTS-SYQVT-TVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTG 92 (241)
Q Consensus 15 ~~~ILiVdd~~~~~~~l~~~L~~~-g~~v~-~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g 92 (241)
..+||||||++..+..+...|... ++.+. .+.++.+++..+.... ||+||+|+.||+++|
T Consensus 3 ~~~iliv~d~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~dlvild~~l~~~~g 64 (210)
T PRK09935 3 PASVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLRTRP------------------VDLIIMDIDLPGTDG 64 (210)
T ss_pred cceEEEECCcHHHHHHHHHHHhhCCCceEEEEeCCHHHHHHHHHhcC------------------CCEEEEeCCCCCCCH
Confidence 478999999999999999999876 57775 6889999998875433 569999999999999
Q ss_pred HHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHHHH
Q 026239 93 YDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMKT 153 (241)
Q Consensus 93 ~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~~~ 153 (241)
+++++.++...+ .+|||++|+.........++..|+++|+.||++..+|...+..++.+
T Consensus 65 ~~~~~~l~~~~~--~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~l~~ 123 (210)
T PRK09935 65 FTFLKRIKQIQS--TVKVLFLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMILSG 123 (210)
T ss_pred HHHHHHHHHhCC--CCcEEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHcC
Confidence 999999997643 78999999998888889999999999999999999998877766554
No 53
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.64 E-value=6.6e-15 Score=134.40 Aligned_cols=115 Identities=30% Similarity=0.464 Sum_probs=103.4
Q ss_pred EEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHHHHHH
Q 026239 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYDLLK 97 (241)
Q Consensus 18 ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~~ll~ 97 (241)
||||||++..+..+...|...||.|..+.++.+|+..+... .||+||+|+.||+++|+++++
T Consensus 1 ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~------------------~~DlVllD~~~p~~~g~~ll~ 62 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALARG------------------QPDLLITDVRMPGEDGLDLLP 62 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcC------------------CCCEEEEcCCCCCCCHHHHHH
Confidence 68999999999999999999999999999999999988543 356999999999999999999
Q ss_pred HHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHHH
Q 026239 98 KIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMK 152 (241)
Q Consensus 98 ~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~~ 152 (241)
.|+...+ .+|||++|+.........+++.|+++|+.||++.++|...+..++.
T Consensus 63 ~l~~~~~--~~~vIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 115 (463)
T TIGR01818 63 QIKKRHP--QLPVIVMTAHSDLDTAVAAYQRGAFEYLPKPFDLDEAVTLVERALA 115 (463)
T ss_pred HHHHhCC--CCeEEEEeCCCCHHHHHHHHHcCcceeecCCCCHHHHHHHHHHHHH
Confidence 9998654 7899999999988889999999999999999999999877766554
No 54
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.64 E-value=7.6e-15 Score=133.40 Aligned_cols=113 Identities=19% Similarity=0.357 Sum_probs=100.6
Q ss_pred EEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCC-----CCH
Q 026239 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPG-----MTG 92 (241)
Q Consensus 18 ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~-----~~g 92 (241)
||||||++..+..+...| .||.|..+.++.+|++.+.... +|+||+|+.||+ ++|
T Consensus 1 ILivddd~~~~~~l~~~l--~~~~v~~a~~~~~al~~l~~~~------------------~dlvllD~~mp~~~~~~~~g 60 (445)
T TIGR02915 1 LLIVEDDLGLQKQLKWSF--ADYELAVAADRESAIALVRRHE------------------PAVVTLDLGLPPDADGASEG 60 (445)
T ss_pred CEEEECCHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHhhCC------------------CCEEEEeCCCCCCcCCCCCH
Confidence 689999999999999888 7899999999999999986443 569999999996 899
Q ss_pred HHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHHH
Q 026239 93 YDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMK 152 (241)
Q Consensus 93 ~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~~ 152 (241)
+++++.++...+ ++|||++|+..+.+....+++.||++||.||++.++|...+..++.
T Consensus 61 ~~~l~~i~~~~~--~~piI~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~ 118 (445)
T TIGR02915 61 LAALQQILAIAP--DTKVIVITGNDDRENAVKAIGLGAYDFYQKPIDPDVLKLIVDRAFH 118 (445)
T ss_pred HHHHHHHHhhCC--CCCEEEEecCCCHHHHHHHHHCCccEEEeCCCCHHHHHHHHhhhhh
Confidence 999999998654 8999999999999999999999999999999999999776665544
No 55
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=99.63 E-value=1.6e-14 Score=117.76 Aligned_cols=117 Identities=23% Similarity=0.439 Sum_probs=103.2
Q ss_pred ceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHHHH
Q 026239 16 FHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYDL 95 (241)
Q Consensus 16 ~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~~l 95 (241)
++||++||++..+..+...|...|+.+..+.++.+++..+... .||+||+|+.+|+++|+++
T Consensus 1 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~------------------~~d~vild~~~~~~~~~~~ 62 (221)
T PRK15479 1 MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLQSE------------------MYALAVLDINMPGMDGLEV 62 (221)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhC------------------CCCEEEEeCCCCCCcHHHH
Confidence 4799999999999999999998899998999999998887543 3569999999999999999
Q ss_pred HHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHHH
Q 026239 96 LKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMK 152 (241)
Q Consensus 96 l~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~~ 152 (241)
++.++...+ ++|+|++++..+......+++.|+++|+.||++..+|...+..++.
T Consensus 63 ~~~i~~~~~--~~~ii~lt~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~ 117 (221)
T PRK15479 63 LQRLRKRGQ--TLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLR 117 (221)
T ss_pred HHHHHhcCC--CCCEEEEECCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHh
Confidence 999998654 7899999999888888899999999999999999998776665543
No 56
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=99.63 E-value=9.2e-15 Score=121.55 Aligned_cols=114 Identities=22% Similarity=0.340 Sum_probs=93.9
Q ss_pred cceEEEEeCCHHHHHHHHHHhhcCC-CEE-EEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCH
Q 026239 15 QFHVLAVDDSIIDRKLIERLLKTSS-YQV-TTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTG 92 (241)
Q Consensus 15 ~~~ILiVdd~~~~~~~l~~~L~~~g-~~v-~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g 92 (241)
+++|+||||++..+..+...|+..| +.+ ..+.++.+++..+... .||+||+|+.||+++|
T Consensus 1 m~~IlIvdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~------------------~~dlv~lDi~~~~~~G 62 (238)
T PRK11697 1 MIKVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEAIGAIHRL------------------KPDVVFLDIQMPRISG 62 (238)
T ss_pred CcEEEEECCCHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHHhc------------------CCCEEEEeCCCCCCCH
Confidence 4799999999999999999998877 343 4688999999988543 3569999999999999
Q ss_pred HHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHH
Q 026239 93 YDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLM 151 (241)
Q Consensus 93 ~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~ 151 (241)
+++++.++... ..+||++|+.. +....+++.|+.+||.||++.++|...+.++.
T Consensus 63 ~~~~~~l~~~~---~~~ii~vt~~~--~~~~~a~~~~~~~yl~KP~~~~~l~~~l~~~~ 116 (238)
T PRK11697 63 LELVGMLDPEH---MPYIVFVTAFD--EYAIKAFEEHAFDYLLKPIDPARLAKTLARLR 116 (238)
T ss_pred HHHHHHhcccC---CCEEEEEeccH--HHHHHHHhcCCcEEEECCCCHHHHHHHHHHHH
Confidence 99999986421 34677787764 46678999999999999999999987776654
No 57
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=99.63 E-value=1.9e-14 Score=115.00 Aligned_cols=119 Identities=26% Similarity=0.365 Sum_probs=104.0
Q ss_pred CcceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHH
Q 026239 14 SQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGY 93 (241)
Q Consensus 14 ~~~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~ 93 (241)
.+.+||+|||++..+..+...|...||.+..+.++.+++..+... .+|+||+|+.+++++|+
T Consensus 2 ~~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~------------------~~d~ii~d~~~~~~~~~ 63 (202)
T PRK09390 2 DKGVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALPGL------------------RFGCVVTDVRMPGIDGI 63 (202)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHhccC------------------CCCEEEEeCCCCCCcHH
Confidence 357899999999999999999998899999999999999887543 35699999999999999
Q ss_pred HHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHHH
Q 026239 94 DLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMK 152 (241)
Q Consensus 94 ~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~~ 152 (241)
++++.++...+ .+|+|++++..+......+++.|+.+|+.||+....|...+..+..
T Consensus 64 ~~~~~l~~~~~--~~~ii~l~~~~~~~~~~~~~~~g~~~~l~~p~~~~~l~~~l~~~~~ 120 (202)
T PRK09390 64 ELLRRLKARGS--PLPVIVMTGHGDVPLAVEAMKLGAVDFIEKPFEDERLIGAIERALA 120 (202)
T ss_pred HHHHHHHhcCC--CCCEEEEECCCCHHHHHHHHHcChHHHhhCCCCHHHHHHHHHHHHH
Confidence 99999997653 8999999999888889999999999999999999888765555443
No 58
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.62 E-value=2e-14 Score=129.77 Aligned_cols=120 Identities=30% Similarity=0.504 Sum_probs=106.7
Q ss_pred ceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHHHH
Q 026239 16 FHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYDL 95 (241)
Q Consensus 16 ~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~~l 95 (241)
.+||+|||++..+..+...|...||.+..+.++.+++..+.... ||+||+|+.||+.+|+++
T Consensus 3 ~~ilii~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~------------------~dlvi~d~~~~~~~g~~l 64 (457)
T PRK09581 3 ARILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAICEREQ------------------PDIILLDVMMPGMDGFEV 64 (457)
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHhhcC------------------CCEEEEeCCCCCCCHHHH
Confidence 48999999999999999999888999999999999999986443 559999999999999999
Q ss_pred HHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHHHH
Q 026239 96 LKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMKT 153 (241)
Q Consensus 96 l~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~~~ 153 (241)
++.|+.....+.+|||++|+..+.....++++.|+++|+.||++.++|...+..+.+.
T Consensus 65 ~~~i~~~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~ 122 (457)
T PRK09581 65 CRRLKSDPATTHIPVVMVTALDDPEDRVRGLEAGADDFLTKPINDVALFARVKSLTRL 122 (457)
T ss_pred HHHHHcCcccCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
Confidence 9999976544579999999999999999999999999999999999997766665543
No 59
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=99.62 E-value=6e-15 Score=148.54 Aligned_cols=117 Identities=27% Similarity=0.483 Sum_probs=105.5
Q ss_pred CcceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHH
Q 026239 14 SQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGY 93 (241)
Q Consensus 14 ~~~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~ 93 (241)
..++||||||++..+..+..+|+..||.|..+.++.+|++.+... .||+||+|+.||+++|+
T Consensus 957 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~------------------~~dlil~D~~mp~~~g~ 1018 (1197)
T PRK09959 957 EKLSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQ------------------HYDLLITDVNMPNMDGF 1018 (1197)
T ss_pred cCceEEEcCCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhcC------------------CCCEEEEeCCCCCCCHH
Confidence 357899999999999999999999999999999999999998543 45699999999999999
Q ss_pred HHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHH
Q 026239 94 DLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHL 150 (241)
Q Consensus 94 ~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l 150 (241)
++++.|+...+ .+|||++|+........++++.|+++||.||++.++|...+..+
T Consensus 1019 ~~~~~i~~~~~--~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~ 1073 (1197)
T PRK09959 1019 ELTRKLREQNS--SLPIWGLTANAQANEREKGLSCGMNLCLFKPLTLDVLKTHLSQL 1073 (1197)
T ss_pred HHHHHHHhcCC--CCCEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHH
Confidence 99999998654 79999999999999999999999999999999999987666544
No 60
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=99.62 E-value=2e-14 Score=118.93 Aligned_cols=117 Identities=23% Similarity=0.408 Sum_probs=103.0
Q ss_pred cceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHHH
Q 026239 15 QFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYD 94 (241)
Q Consensus 15 ~~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~~ 94 (241)
..+||+|||++..+..+...|...|+.+..+.++.+++..+.... ||+||+|+.||+++|++
T Consensus 10 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~------------------~dlvl~d~~~~~~~g~~ 71 (240)
T PRK10710 10 TPRILIVEDEPKLGQLLIDYLQAASYATTLLSHGDEVLPYVRQTP------------------PDLILLDLMLPGTDGLT 71 (240)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCC------------------CCEEEEeCCCCCCCHHH
Confidence 458999999999999999999999999999999999999885433 56999999999999999
Q ss_pred HHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHHH
Q 026239 95 LLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMK 152 (241)
Q Consensus 95 ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~~ 152 (241)
+++.|+.. ..+|+|++++.........++..|+++|+.||++..+|...+..++.
T Consensus 72 ~~~~l~~~---~~~pii~l~~~~~~~~~~~~~~~ga~~~l~kp~~~~~L~~~i~~~~~ 126 (240)
T PRK10710 72 LCREIRRF---SDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR 126 (240)
T ss_pred HHHHHHhc---CCCCEEEEEcCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHh
Confidence 99999963 37899999998888888899999999999999999998776655543
No 61
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=99.61 E-value=1.7e-14 Score=126.66 Aligned_cols=102 Identities=23% Similarity=0.378 Sum_probs=88.3
Q ss_pred ceEEEEeCCHHHHHHHHHHh-hcCCCEEE-EECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHH
Q 026239 16 FHVLAVDDSIIDRKLIERLL-KTSSYQVT-TVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGY 93 (241)
Q Consensus 16 ~~ILiVdd~~~~~~~l~~~L-~~~g~~v~-~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~ 93 (241)
++||||||++..+..+..+| ...++.+. .+.++.++++.+.... ||+||+|+.||+++|+
T Consensus 1 ~~VLvVdd~~~~~~~l~~~L~~~~~~~vv~~a~~~~eal~~l~~~~------------------pDlVllD~~mp~~~G~ 62 (337)
T PRK12555 1 MRIGIVNDSPLAVEALRRALARDPDHEVVWVATDGAQAVERCAAQP------------------PDVILMDLEMPRMDGV 62 (337)
T ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhccC------------------CCEEEEcCCCCCCCHH
Confidence 48999999999999999999 46688876 7899999999986544 5599999999999999
Q ss_pred HHHHHHHhcCCCCCCcEEEEccCCC--hHHHHHHHHhcccccccCCC
Q 026239 94 DLLKKIKESSSLRDIPVVIMSSENV--PSRISRCLEEGAEEFFLKPV 138 (241)
Q Consensus 94 ~ll~~ir~~~~~~~ipvIils~~~~--~~~~~~~l~~Ga~~~l~KP~ 138 (241)
++++.|+... .+|||++++... .....++++.|+++||.||+
T Consensus 63 e~l~~l~~~~---~~pvivvs~~~~~~~~~~~~al~~Ga~d~l~KP~ 106 (337)
T PRK12555 63 EATRRIMAER---PCPILIVTSLTERNASRVFEAMGAGALDAVDTPT 106 (337)
T ss_pred HHHHHHHHHC---CCcEEEEeCCCCcCHHHHHHHHhcCceEEEECCC
Confidence 9999998743 589999998643 45667899999999999999
No 62
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=99.60 E-value=9.2e-14 Score=102.00 Aligned_cols=120 Identities=28% Similarity=0.531 Sum_probs=102.7
Q ss_pred CcceEEEEeCCHHHHHHHHHHhhcCCCE-EEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCH
Q 026239 14 SQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTG 92 (241)
Q Consensus 14 ~~~~ILiVdd~~~~~~~l~~~L~~~g~~-v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g 92 (241)
+.++|+++++++.....+...|...|+. +..+.++.+++..+... .+|++++|..+++++|
T Consensus 4 ~~~~il~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~------------------~~di~l~d~~~~~~~~ 65 (129)
T PRK10610 4 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG------------------GFGFVISDWNMPNMDG 65 (129)
T ss_pred ccceEEEEcCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHhhcc------------------CCCEEEEcCCCCCCCH
Confidence 4589999999999999999999988884 67889999999887543 3569999999999999
Q ss_pred HHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHH
Q 026239 93 YDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLM 151 (241)
Q Consensus 93 ~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~ 151 (241)
+++++.++.....+.+|+++++..........+++.|+++|+.||++..++...+..+.
T Consensus 66 ~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~i~~p~~~~~l~~~l~~~~ 124 (129)
T PRK10610 66 LELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIF 124 (129)
T ss_pred HHHHHHHHhCCCcCCCcEEEEECCCCHHHHHHHHHhCCCeEEECCCCHHHHHHHHHHHH
Confidence 99999999865445789999998888888889999999999999999999876665543
No 63
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.60 E-value=1.2e-14 Score=125.93 Aligned_cols=104 Identities=33% Similarity=0.487 Sum_probs=91.5
Q ss_pred cceEEEEeCCHHHHHHHHHHhhcCC-CE-EEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCH
Q 026239 15 QFHVLAVDDSIIDRKLIERLLKTSS-YQ-VTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTG 92 (241)
Q Consensus 15 ~~~ILiVdd~~~~~~~l~~~L~~~g-~~-v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g 92 (241)
+++||+|||+...|..|+++|...| .. |.++.|+.+|++.+....|| +|.+|+.||.|||
T Consensus 1 ~irVlvVddsal~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~~~~~PD------------------Vi~ld~emp~mdg 62 (350)
T COG2201 1 KIRVLVVDDSALMRKVISDILNSDPDIEVVGTARNGREAIDKVKKLKPD------------------VITLDVEMPVMDG 62 (350)
T ss_pred CcEEEEEcCcHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCC------------------EEEEecccccccH
Confidence 4799999999999999999999888 44 55899999999999776665 9999999999999
Q ss_pred HHHHHHHHhcCCCCCCcEEEEccC--CChHHHHHHHHhcccccccCCCC
Q 026239 93 YDLLKKIKESSSLRDIPVVIMSSE--NVPSRISRCLEEGAEEFFLKPVR 139 (241)
Q Consensus 93 ~~ll~~ir~~~~~~~ipvIils~~--~~~~~~~~~l~~Ga~~~l~KP~~ 139 (241)
+++++.|.... .+|||++|+- ...+...++++.||.||+.||..
T Consensus 63 l~~l~~im~~~---p~pVimvsslt~~g~~~t~~al~~gAvD~i~kp~~ 108 (350)
T COG2201 63 LEALRKIMRLR---PLPVIMVSSLTEEGAEATLEALELGAVDFIAKPSG 108 (350)
T ss_pred HHHHHHHhcCC---CCcEEEEeccccccHHHHHHHHhcCcceeecCCCc
Confidence 99999998763 7999999873 33667789999999999999984
No 64
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=99.59 E-value=1.7e-14 Score=119.03 Aligned_cols=117 Identities=9% Similarity=0.140 Sum_probs=95.3
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhcCCCEE-EEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCC
Q 026239 13 ESQFHVLAVDDSIIDRKLIERLLKTSSYQV-TTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMT 91 (241)
Q Consensus 13 ~~~~~ILiVdd~~~~~~~l~~~L~~~g~~v-~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~ 91 (241)
....++++|||++..+..++.+|. .++.+ ..+.++.+++..+. .|||||+|+.||+++
T Consensus 8 ~~~~~~~~v~~~~l~~~~l~~~L~-~~~~v~~~~~~~~~~~~~~~--------------------~~DvvllDi~~p~~~ 66 (216)
T PRK10100 8 SHGHTLLLITKPSLQATALLQHLK-QSLAITGKLHNIQRSLDDIS--------------------SGSIILLDMMEADKK 66 (216)
T ss_pred ccCceEEEEeChHhhhHHHHHHHH-HhCCCeEEEcCHHHhhccCC--------------------CCCEEEEECCCCCcc
Confidence 456789999999999999999998 45554 47789999888652 156999999999999
Q ss_pred HHHHH-HHHHhcCCCCCCcEEEEccCCChHHHHHHHH--hcccccccCCCCHHHHHHhhHHHHHHH
Q 026239 92 GYDLL-KKIKESSSLRDIPVVIMSSENVPSRISRCLE--EGAEEFFLKPVRLSDLNKLKPHLMKTK 154 (241)
Q Consensus 92 g~~ll-~~ir~~~~~~~ipvIils~~~~~~~~~~~l~--~Ga~~~l~KP~~~~~L~~~~~~l~~~~ 154 (241)
|++++ +.|+...+ .++||++|+..+ ....++. .||.+||.|+.+.++|.+.+..+..+.
T Consensus 67 G~~~~~~~i~~~~p--~~~vvvlt~~~~--~~~~~~~~~~Ga~G~l~K~~~~~~L~~aI~~v~~G~ 128 (216)
T PRK10100 67 LIHYWQDTLSRKNN--NIKILLLNTPED--YPYREIENWPHINGVFYAMEDQERVVNGLQGVLRGE 128 (216)
T ss_pred HHHHHHHHHHHhCC--CCcEEEEECCch--hHHHHHHHhcCCeEEEECCCCHHHHHHHHHHHHcCC
Confidence 99997 56787654 899999999865 3445555 499999999999999998888877653
No 65
>PRK10403 transcriptional regulator NarP; Provisional
Probab=99.57 E-value=9.3e-14 Score=112.38 Aligned_cols=119 Identities=23% Similarity=0.412 Sum_probs=102.1
Q ss_pred CcceEEEEeCCHHHHHHHHHHhhc-CCCEEE-EECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCC
Q 026239 14 SQFHVLAVDDSIIDRKLIERLLKT-SSYQVT-TVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMT 91 (241)
Q Consensus 14 ~~~~ILiVdd~~~~~~~l~~~L~~-~g~~v~-~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~ 91 (241)
..++||+|||++..+..+...|.. .++.+. .+.++.+++..+... .||+||+|+.+|+++
T Consensus 5 ~~~~ilii~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~dlvi~d~~~~~~~ 66 (215)
T PRK10403 5 TPFQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLANRL------------------DPDVILLDLNMKGMS 66 (215)
T ss_pred eeEEEEEEcCCHHHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhc------------------CCCEEEEecCCCCCc
Confidence 358999999999999999999975 577765 688999999887543 356999999999999
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHHH
Q 026239 92 GYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMK 152 (241)
Q Consensus 92 g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~~ 152 (241)
|+++++.++...+ .+|+++++...+......+++.|+++|+.||++..+|...+..+..
T Consensus 67 ~~~~~~~l~~~~~--~~~ii~l~~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~ 125 (215)
T PRK10403 67 GLDTLNALRRDGV--TAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAK 125 (215)
T ss_pred HHHHHHHHHHhCC--CCeEEEEeCCCChHHHHHHHHcCCCeEEecCCCHHHHHHHHHHHhC
Confidence 9999999998654 7899999988888888899999999999999999998877766543
No 66
>PRK13558 bacterio-opsin activator; Provisional
Probab=99.57 E-value=3.3e-14 Score=135.21 Aligned_cols=107 Identities=19% Similarity=0.202 Sum_probs=96.7
Q ss_pred CcceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHH
Q 026239 14 SQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGY 93 (241)
Q Consensus 14 ~~~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~ 93 (241)
+.++||||||++..+..+..+|...||.|..+.++.+++..+.... |||||+|+.||+++|+
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~al~~~~~~~------------------~Dlvl~d~~lp~~~g~ 67 (665)
T PRK13558 6 PTRGVLFVGDDPEAGPVDCDLDEDGRLDVTQIRDFVAARDRVEAGE------------------IDCVVADHEPDGFDGL 67 (665)
T ss_pred cceeEEEEccCcchHHHHHHHhhccCcceEeeCCHHHHHHHhhccC------------------CCEEEEeccCCCCcHH
Confidence 3589999999999999999999988999999999999999885433 5699999999999999
Q ss_pred HHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCH
Q 026239 94 DLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRL 140 (241)
Q Consensus 94 ~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~ 140 (241)
+++++|+...+ ++|||++|+..+......++..|+.+|+.||...
T Consensus 68 ~~l~~l~~~~~--~~piI~lt~~~~~~~~~~al~~Ga~dyl~k~~~~ 112 (665)
T PRK13558 68 ALLEAVRQTTA--VPPVVVVPTAGDEAVARRAVDADAAAYVPAVSDD 112 (665)
T ss_pred HHHHHHHhcCC--CCCEEEEECCCCHHHHHHHHhcCcceEEeccchh
Confidence 99999998654 8999999999999999999999999999999753
No 67
>PRK10651 transcriptional regulator NarL; Provisional
Probab=99.56 E-value=1.5e-13 Score=111.44 Aligned_cols=121 Identities=25% Similarity=0.414 Sum_probs=103.7
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhcC-CCEEE-EECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCC
Q 026239 13 ESQFHVLAVDDSIIDRKLIERLLKTS-SYQVT-TVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGM 90 (241)
Q Consensus 13 ~~~~~ILiVdd~~~~~~~l~~~L~~~-g~~v~-~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~ 90 (241)
....+||+|||++..+..+..+|... ++.+. .+.++.+++..+.... ||+||+|+.++++
T Consensus 4 ~~~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~dlvl~d~~l~~~ 65 (216)
T PRK10651 4 QEPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLD------------------PDLILLDLNMPGM 65 (216)
T ss_pred CcceEEEEECCCHHHHHHHHHHHccCCCcEEEEEeCCHHHHHHHHHhCC------------------CCEEEEeCCCCCC
Confidence 34589999999999999999999764 56554 6899999999885433 5699999999999
Q ss_pred CHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHHHH
Q 026239 91 TGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMKT 153 (241)
Q Consensus 91 ~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~~~ 153 (241)
+|+++++.++...+ .+|+|++++..+......++..|+++|+.||++..+|...+..++.+
T Consensus 66 ~~~~~~~~l~~~~~--~~~vi~l~~~~~~~~~~~~~~~g~~~~i~k~~~~~~l~~~i~~~~~~ 126 (216)
T PRK10651 66 NGLETLDKLREKSL--SGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQAAAG 126 (216)
T ss_pred cHHHHHHHHHHhCC--CCcEEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 99999999998654 78999999988888889999999999999999999998777766543
No 68
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=99.56 E-value=4.7e-14 Score=115.61 Aligned_cols=107 Identities=15% Similarity=0.179 Sum_probs=87.7
Q ss_pred HHHHHHHHhhc---CCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEE---EeCCCCCCCHHHHHHHHH
Q 026239 27 DRKLIERLLKT---SSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVI---TDYCMPGMTGYDLLKKIK 100 (241)
Q Consensus 27 ~~~~l~~~L~~---~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIi---lD~~mp~~~g~~ll~~ir 100 (241)
.|..++.+|.. .||.|..+.++.++++.+.... ||++| +|+.||+++|++++++|+
T Consensus 2 ~r~gi~~lL~~~~~~~~~v~~~~~~~~~l~~~~~~~------------------pd~vl~dl~d~~mp~~~Gl~~~~~l~ 63 (207)
T PRK11475 2 SSIGIESLFRKFPGNPYKLHTFSSQSSFQDAMSRIS------------------FSAVIFSLSAMRSERREGLSCLTELA 63 (207)
T ss_pred chHHHHHHHhcCCCCeeEEEEeCCHHHHHHHhccCC------------------CCEEEeeccccCCCCCCHHHHHHHHH
Confidence 36678888864 3566678999999999886444 45998 688889999999999999
Q ss_pred hcCCCCCCcEEEEccCCChHHHHHHH-HhcccccccCCCCHHHHHHhhHHHHHH
Q 026239 101 ESSSLRDIPVVIMSSENVPSRISRCL-EEGAEEFFLKPVRLSDLNKLKPHLMKT 153 (241)
Q Consensus 101 ~~~~~~~ipvIils~~~~~~~~~~~l-~~Ga~~~l~KP~~~~~L~~~~~~l~~~ 153 (241)
...+ .+|||++|+..++..+..++ +.||++||.||++.++|...+..+..+
T Consensus 64 ~~~p--~~~iIvlt~~~~~~~~~~~~~~~Ga~gyl~K~~~~~eL~~aI~~v~~G 115 (207)
T PRK11475 64 IKFP--RMRRLVIADDDIEARLIGSLSPSPLDGVLSKASTLEILQQELFLSLNG 115 (207)
T ss_pred HHCC--CCCEEEEeCCCCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHCC
Confidence 8755 89999999987776666655 799999999999999998888877654
No 69
>PRK13435 response regulator; Provisional
Probab=99.55 E-value=1.2e-13 Score=106.17 Aligned_cols=113 Identities=19% Similarity=0.253 Sum_probs=95.2
Q ss_pred cceEEEEeCCHHHHHHHHHHhhcCCCEEE-EECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCC-CCCH
Q 026239 15 QFHVLAVDDSIIDRKLIERLLKTSSYQVT-TVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMP-GMTG 92 (241)
Q Consensus 15 ~~~ILiVdd~~~~~~~l~~~L~~~g~~v~-~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp-~~~g 92 (241)
+++|||+|++......+...|+..|+.+. .++++.++++.+... .||+||+|+.++ +.+|
T Consensus 5 ~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~------------------~~dliivd~~~~~~~~~ 66 (145)
T PRK13435 5 QLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALGRRR------------------QPDVALVDVHLADGPTG 66 (145)
T ss_pred cceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHhhhc------------------CCCEEEEeeecCCCCcH
Confidence 68999999999999999999998899877 789999999887543 356999999998 5899
Q ss_pred HHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHH
Q 026239 93 YDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLM 151 (241)
Q Consensus 93 ~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~ 151 (241)
+++++.++.. ..+|+|++++..+ ...++..|+++|+.||++..+|...+.++.
T Consensus 67 ~~~~~~l~~~---~~~pii~ls~~~~---~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~ 119 (145)
T PRK13435 67 VEVARRLSAD---GGVEVVFMTGNPE---RVPHDFAGALGVIAKPYSPRGVARALSYLS 119 (145)
T ss_pred HHHHHHHHhC---CCCCEEEEeCCHH---HHHHHhcCcceeEeCCCCHHHHHHHHHHHH
Confidence 9999999864 2789999987643 246778999999999999999877766654
No 70
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=99.54 E-value=1.5e-13 Score=121.51 Aligned_cols=104 Identities=36% Similarity=0.457 Sum_probs=89.6
Q ss_pred cceEEEEeCCHHHHHHHHHHhhcC-CCEEE-EECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCH
Q 026239 15 QFHVLAVDDSIIDRKLIERLLKTS-SYQVT-TVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTG 92 (241)
Q Consensus 15 ~~~ILiVdd~~~~~~~l~~~L~~~-g~~v~-~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g 92 (241)
+++||||||+...+..+..+|... ++.+. .+.++.+++..+.... ||+|++|+.||+++|
T Consensus 3 ~~~ILiVdd~~~~~~~L~~~L~~~~~~~vv~~a~~~~~al~~~~~~~------------------~DlVllD~~mp~~dg 64 (354)
T PRK00742 3 KIRVLVVDDSAFMRRLISEILNSDPDIEVVGTAPDGLEAREKIKKLN------------------PDVITLDVEMPVMDG 64 (354)
T ss_pred ccEEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhhhC------------------CCEEEEeCCCCCCCh
Confidence 479999999999999999999876 78877 8899999999885443 569999999999999
Q ss_pred HHHHHHHHhcCCCCCCcEEEEccCC--ChHHHHHHHHhcccccccCCCC
Q 026239 93 YDLLKKIKESSSLRDIPVVIMSSEN--VPSRISRCLEEGAEEFFLKPVR 139 (241)
Q Consensus 93 ~~ll~~ir~~~~~~~ipvIils~~~--~~~~~~~~l~~Ga~~~l~KP~~ 139 (241)
+++++.|+... .+|+|++|+.. ......++++.|+++||.||+.
T Consensus 65 le~l~~i~~~~---~~piIvls~~~~~~~~~~~~al~~Ga~d~l~kP~~ 110 (354)
T PRK00742 65 LDALEKIMRLR---PTPVVMVSSLTERGAEITLRALELGAVDFVTKPFL 110 (354)
T ss_pred HHHHHHHHHhC---CCCEEEEecCCCCCHHHHHHHHhCCCcEEEeCCcc
Confidence 99999999764 38999998753 3456678999999999999994
No 71
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=99.53 E-value=4.3e-13 Score=107.71 Aligned_cols=118 Identities=22% Similarity=0.352 Sum_probs=101.3
Q ss_pred cceEEEEeCCHHHHHHHHHHhhcC-CCEEE-EECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCH
Q 026239 15 QFHVLAVDDSIIDRKLIERLLKTS-SYQVT-TVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTG 92 (241)
Q Consensus 15 ~~~ILiVdd~~~~~~~l~~~L~~~-g~~v~-~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g 92 (241)
..+||++||++..+..+...|... ++.+. .+.++.+++..+... .||+||+|+.+++++|
T Consensus 3 ~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~dlvl~d~~~~~~~~ 64 (211)
T PRK15369 3 NYKILLVDDHELIINGIKNMLAPYPRYKIVGQVDNGLEVYNACRQL------------------EPDIVILDLGLPGMNG 64 (211)
T ss_pred ccEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHHhc------------------CCCEEEEeCCCCCCCH
Confidence 478999999999999999999865 46654 788999999877543 3569999999999999
Q ss_pred HHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHHH
Q 026239 93 YDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMK 152 (241)
Q Consensus 93 ~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~~ 152 (241)
+++++.++...+ .+|+|++|+.........++..|+++|+.||++..+|...+..+..
T Consensus 65 ~~~~~~l~~~~~--~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 122 (211)
T PRK15369 65 LDVIPQLHQRWP--AMNILVLTARQEEHMASRTLAAGALGYVLKKSPQQILLAAIQTVAV 122 (211)
T ss_pred HHHHHHHHHHCC--CCcEEEEeCCCCHHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHC
Confidence 999999998643 7899999999888889999999999999999999998777666543
No 72
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=99.52 E-value=2.8e-13 Score=111.11 Aligned_cols=117 Identities=9% Similarity=0.066 Sum_probs=94.3
Q ss_pred ceEEEEeCCHHHHHHHHHHhhcCCC--E-EEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCC--CCCC
Q 026239 16 FHVLAVDDSIIDRKLIERLLKTSSY--Q-VTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYC--MPGM 90 (241)
Q Consensus 16 ~~ILiVdd~~~~~~~l~~~L~~~g~--~-v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~--mp~~ 90 (241)
+.||||||++..+..++.+|...++ . |..++++.+++..+.... |||||+|+. +++.
T Consensus 1 ~~~lIvDD~~~~~~gl~~~L~~~~~~~~vv~~~~~~~~~~~~~~~~~------------------pDlvLlDl~~~l~~~ 62 (207)
T PRK15411 1 MSTIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACDSLR------------------PSVVFINEDCFIHDA 62 (207)
T ss_pred CCEEEEcCCHHHHHHHHHHHHhCCCcceEEEecCCHHHHHHHHhccC------------------CCEEEEeCcccCCCC
Confidence 4689999999999999999986553 3 447899999999885444 459999966 8888
Q ss_pred CHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccc-cccCCCCHHHHHHhhHHHHHH
Q 026239 91 TGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEE-FFLKPVRLSDLNKLKPHLMKT 153 (241)
Q Consensus 91 ~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~-~l~KP~~~~~L~~~~~~l~~~ 153 (241)
+|+++++.|++..+ .++||++|+..+..... ++..|+.. |+.|+.++++|..++..+..+
T Consensus 63 ~g~~~i~~i~~~~p--~~~iivlt~~~~~~~~~-~~~~~~~~~~~~K~~~~~~L~~aI~~v~~g 123 (207)
T PRK15411 63 SNSQRIKQIINQHP--NTLFIVFMAIANIHFDE-YLLVRKNLLISSKSIKPESLDDLLGDILKK 123 (207)
T ss_pred ChHHHHHHHHHHCC--CCeEEEEECCCchhHHH-HHHHHhhceeeeccCCHHHHHHHHHHHHcC
Confidence 99999999998765 79999999987665543 55556655 789999999998888777654
No 73
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=99.48 E-value=8.5e-13 Score=104.45 Aligned_cols=116 Identities=26% Similarity=0.314 Sum_probs=94.9
Q ss_pred CcceEEEEeCCHHHHHHHHHHhhcCCCEEE-EECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCH
Q 026239 14 SQFHVLAVDDSIIDRKLIERLLKTSSYQVT-TVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTG 92 (241)
Q Consensus 14 ~~~~ILiVdd~~~~~~~l~~~L~~~g~~v~-~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g 92 (241)
...+||++||....+..+...|...||.++ .+.++.++.+.+....|| +||+|+.+|..|-
T Consensus 4 ~~lrvlv~~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~~~~~pD------------------vVildie~p~rd~ 65 (194)
T COG3707 4 MLLRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVCERLQPD------------------VVILDIEMPRRDI 65 (194)
T ss_pred cccceeeccccccchhhHHHHHHHcCCeEeeeecccccchhHHHhcCCC------------------EEEEecCCCCccH
Confidence 358999999999999999999999999766 778888888888666655 9999999999883
Q ss_pred HHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHH
Q 026239 93 YDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHL 150 (241)
Q Consensus 93 ~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l 150 (241)
.+-+-+.... ...|||++|++++++.+..++++|+.+||.||++...|.-.+.-.
T Consensus 66 ~e~~~~~~~~---~~~piv~lt~~s~p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~vA 120 (194)
T COG3707 66 IEALLLASEN---VARPIVALTAYSDPALIEAAIEAGVMAYIVKPLDESRLLPILDVA 120 (194)
T ss_pred HHHHHHhhcC---CCCCEEEEEccCChHHHHHHHHcCCeEEEecCcchhhhhHHHHHH
Confidence 3333333322 267999999999999999999999999999999998886544433
No 74
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=99.46 E-value=1.1e-12 Score=127.79 Aligned_cols=116 Identities=13% Similarity=0.131 Sum_probs=102.4
Q ss_pred cceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHHH
Q 026239 15 QFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYD 94 (241)
Q Consensus 15 ~~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~~ 94 (241)
..+||||||++..+..+...|...||.++.+.++.++++.+.... ..||+||+ .||+++|++
T Consensus 697 ~~~ILvVddd~~~~~~l~~~L~~~G~~v~~~~s~~~al~~l~~~~----------------~~~DlVll--~~~~~~g~~ 758 (828)
T PRK13837 697 GETVLLVEPDDATLERYEEKLAALGYEPVGFSTLAAAIAWISKGP----------------ERFDLVLV--DDRLLDEEQ 758 (828)
T ss_pred CCEEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCC----------------CCceEEEE--CCCCCCHHH
Confidence 468999999999999999999999999999999999999885321 23679999 799999999
Q ss_pred HHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHH
Q 026239 95 LLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLM 151 (241)
Q Consensus 95 ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~ 151 (241)
+++.|+...+ .+|||++|+.........++..| ++||.||++..+|..++.+.+
T Consensus 759 l~~~l~~~~~--~ipIIvls~~~~~~~~~~~~~~G-~d~L~KP~~~~~L~~~l~~~l 812 (828)
T PRK13837 759 AAAALHAAAP--TLPIILGGNSKTMALSPDLLASV-AEILAKPISSRTLAYALRTAL 812 (828)
T ss_pred HHHHHHhhCC--CCCEEEEeCCCchhhhhhHhhcc-CcEEeCCCCHHHHHHHHHHHH
Confidence 9999998654 89999999998888888999999 999999999999987776654
No 75
>PRK09191 two-component response regulator; Provisional
Probab=99.45 E-value=2.9e-12 Score=107.91 Aligned_cols=114 Identities=17% Similarity=0.231 Sum_probs=95.2
Q ss_pred cceEEEEeCCHHHHHHHHHHhhcCCCEEE-EECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCC-CCH
Q 026239 15 QFHVLAVDDSIIDRKLIERLLKTSSYQVT-TVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPG-MTG 92 (241)
Q Consensus 15 ~~~ILiVdd~~~~~~~l~~~L~~~g~~v~-~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~-~~g 92 (241)
..+||++||++..+..+...|+..|+.+. .+.++.+++..+... .+|+||+|+.||+ ++|
T Consensus 137 ~~~~liidd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~l~~l~~~------------------~~dlvi~d~~~~~~~~g 198 (261)
T PRK09191 137 ATRVLIIEDEPIIAMDLEQLVESLGHRVTGIARTRAEAVALAKKT------------------RPGLILADIQLADGSSG 198 (261)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHhcc------------------CCCEEEEecCCCCCCCH
Confidence 46899999999999999999998899887 788999999988543 3569999999995 899
Q ss_pred HHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHH
Q 026239 93 YDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLM 151 (241)
Q Consensus 93 ~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~ 151 (241)
+++++.++... .+|||++|+..+.... +...|+.+|+.||++.++|...+..++
T Consensus 199 ~e~l~~l~~~~---~~pii~ls~~~~~~~~--~~~~~~~~~l~kP~~~~~l~~~i~~~~ 252 (261)
T PRK09191 199 IDAVNDILKTF---DVPVIFITAFPERLLT--GERPEPAFLITKPFQPDTVKAAISQAL 252 (261)
T ss_pred HHHHHHHHHhC---CCCEEEEeCCCcHHHH--HHhcccCceEECCCCHHHHHHHHHHHH
Confidence 99999998754 6899999987655433 345678899999999999987776654
No 76
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=99.41 E-value=8.7e-12 Score=87.70 Aligned_cols=110 Identities=31% Similarity=0.595 Sum_probs=95.1
Q ss_pred EEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHHHHHHH
Q 026239 19 LAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYDLLKK 98 (241)
Q Consensus 19 LiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~~ll~~ 98 (241)
+++++++..+..+...|...|+.+..+.+..+++..+... .+|++|+|+.+++.+|+++++.
T Consensus 1 l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~ii~~~~~~~~~~~~~~~~ 62 (113)
T cd00156 1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLAEE------------------KPDLILLDIMMPGMDGLELLRR 62 (113)
T ss_pred CeecCcHHHHHHHHHHHhhcCceEEEecCHHHHHHHHHhC------------------CCCEEEEecCCCCCchHHHHHH
Confidence 4789999999999999988899998999999999888543 3569999999999999999999
Q ss_pred HHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhH
Q 026239 99 IKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKP 148 (241)
Q Consensus 99 ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~ 148 (241)
++... ..+|+++++..........++..|+.+|+.||++...|...+.
T Consensus 63 l~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~p~~~~~l~~~l~ 110 (113)
T cd00156 63 IRKRG--PDIPIIFLTAHGDDEDAVEALKAGADDYLTKPFSPEELLARIR 110 (113)
T ss_pred HHHhC--CCCCEEEEEecccHHHHHHHHHcChhhHccCCCCHHHHHHHHH
Confidence 99863 3789999988777777888999999999999999988866554
No 77
>PRK10693 response regulator of RpoS; Provisional
Probab=99.37 E-value=6.6e-12 Score=108.77 Aligned_cols=88 Identities=28% Similarity=0.548 Sum_probs=75.4
Q ss_pred EECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHH
Q 026239 44 TVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRIS 123 (241)
Q Consensus 44 ~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~ 123 (241)
.+.++.+|++.+.... ||+||+|+.||+++|+++++.++...+ .+|||++|+..+.+.+.
T Consensus 2 ~a~~g~~al~~l~~~~------------------pDlVL~D~~mp~~~Gle~~~~ir~~~~--~ipiI~lt~~~~~~~~~ 61 (303)
T PRK10693 2 LAANGVDALELLGGFT------------------PDLIICDLAMPRMNGIEFVEHLRNRGD--QTPVLVISATENMADIA 61 (303)
T ss_pred EeCCHHHHHHHHhcCC------------------CCEEEEeCCCCCCCHHHHHHHHHhcCC--CCcEEEEECCCCHHHHH
Confidence 4678999999885443 559999999999999999999998654 79999999999999999
Q ss_pred HHHHhcccccccCCC-CHHHHHHhhHHHH
Q 026239 124 RCLEEGAEEFFLKPV-RLSDLNKLKPHLM 151 (241)
Q Consensus 124 ~~l~~Ga~~~l~KP~-~~~~L~~~~~~l~ 151 (241)
++++.||+|||.||+ +.++|...+...+
T Consensus 62 ~al~~Ga~dyl~KP~~~~~~L~~~i~~~l 90 (303)
T PRK10693 62 KALRLGVQDVLLKPVKDLNRLREMVFACL 90 (303)
T ss_pred HHHHCCCcEEEECCCCcHHHHHHHHHHHh
Confidence 999999999999999 4788876555444
No 78
>PRK13557 histidine kinase; Provisional
Probab=99.36 E-value=1.3e-11 Score=113.70 Aligned_cols=118 Identities=25% Similarity=0.341 Sum_probs=102.8
Q ss_pred cceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCC-CCHH
Q 026239 15 QFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPG-MTGY 93 (241)
Q Consensus 15 ~~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~-~~g~ 93 (241)
..+||||||++..+..+...|+..||.+..+.++.+++..+... ..||+||+|+.+++ ++|+
T Consensus 415 ~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~-----------------~~~d~vi~d~~~~~~~~~~ 477 (540)
T PRK13557 415 TETILIVDDRPDVAELARMILEDFGYRTLVASNGREALEILDSH-----------------PEVDLLFTDLIMPGGMNGV 477 (540)
T ss_pred CceEEEEcCcHHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHhcC-----------------CCceEEEEeccCCCCCCHH
Confidence 46899999999999999999999999999999999999987432 23669999999997 9999
Q ss_pred HHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHH
Q 026239 94 DLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLM 151 (241)
Q Consensus 94 ~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~ 151 (241)
++++.|+...+ .+|||++++.........++..|+.+|+.||++.++|...+..++
T Consensus 478 ~~~~~l~~~~~--~~~ii~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 533 (540)
T PRK13557 478 MLAREARRRQP--KIKVLLTTGYAEASIERTDAGGSEFDILNKPYRRAELARRVRMVL 533 (540)
T ss_pred HHHHHHHHhCC--CCcEEEEcCCCchhhhhhhccccCCceeeCCCCHHHHHHHHHHHh
Confidence 99999998654 789999999888888888899999999999999999877665543
No 79
>PRK15029 arginine decarboxylase; Provisional
Probab=99.31 E-value=2.1e-11 Score=115.99 Aligned_cols=108 Identities=18% Similarity=0.257 Sum_probs=87.4
Q ss_pred ceEEEEeCCHH--------HHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCC
Q 026239 16 FHVLAVDDSII--------DRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCM 87 (241)
Q Consensus 16 ~~ILiVdd~~~--------~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~m 87 (241)
++||||||+.. .++.|...|+..||+|..+.++.+|+..+... ..||+||+|+.|
T Consensus 1 MkILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~~-----------------~~~DlVLLD~~L 63 (755)
T PRK15029 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSN-----------------EAIDCLMFSYQM 63 (755)
T ss_pred CeEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhc-----------------CCCcEEEEECCC
Confidence 37999999995 68999999999999999999999999998531 246799999999
Q ss_pred CCCCHH----HHHHHHHhcCCCCCCcEEEEccCCC--hHHHHHHHHhcccccccCCCCHHHH
Q 026239 88 PGMTGY----DLLKKIKESSSLRDIPVVIMSSENV--PSRISRCLEEGAEEFFLKPVRLSDL 143 (241)
Q Consensus 88 p~~~g~----~ll~~ir~~~~~~~ipvIils~~~~--~~~~~~~l~~Ga~~~l~KP~~~~~L 143 (241)
|+++|+ ++|++||.... ++|||++|+..+ .......++ -+++||.+--+..++
T Consensus 64 Pd~dG~~~~~ell~~IR~~~~--~iPIIlLTar~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 122 (755)
T PRK15029 64 EHPDEHQNVRQLIGKLHERQQ--NVPVFLLGDREKALAAMDRDLLE-LVDEFAWILEDTADF 122 (755)
T ss_pred CCCccchhHHHHHHHHHhhCC--CCCEEEEEcCCcccccCCHHHHH-hhheEEEecCCCHHH
Confidence 999997 89999997644 899999999875 333333333 377888887765554
No 80
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=99.19 E-value=2.1e-10 Score=96.32 Aligned_cols=117 Identities=25% Similarity=0.433 Sum_probs=96.4
Q ss_pred cceEEEEeCCHHHHHHHHHHhhcCC-CEEE-EECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCH
Q 026239 15 QFHVLAVDDSIIDRKLIERLLKTSS-YQVT-TVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTG 92 (241)
Q Consensus 15 ~~~ILiVdd~~~~~~~l~~~L~~~g-~~v~-~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g 92 (241)
+++|+++||++..+..+..++.... +.+. .+.++.++++.+... .+|++|+|+.||+++|
T Consensus 1 m~~i~i~dd~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~fldI~~~~~~G 62 (244)
T COG3279 1 MLKVLIVDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLLQGL------------------RPDLVFLDIAMPDING 62 (244)
T ss_pred CCcEEEecCCHHHHHHHHHHHHhhhhcCeeeeeccchhhHHHHhcc------------------CCCeEEEeeccCccch
Confidence 4789999999999999999998322 3332 688999999998654 3569999999999999
Q ss_pred HHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHHHH
Q 026239 93 YDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMKT 153 (241)
Q Consensus 93 ~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~~~ 153 (241)
+++.+.|+...+ ..+|+++|+.. +....+++..|.||+.||++.+.|.+.+......
T Consensus 63 ~ela~~i~~~~~--~~~Ivfvt~~~--~~a~~afev~a~d~i~kp~~~~~l~~~l~~~~~~ 119 (244)
T COG3279 63 IELAARIRKGDP--RPAIVFVTAHD--EYAVAAFEVEALDYLLKPISEERLAKTLERLRRY 119 (244)
T ss_pred HHHHHHhcccCC--CCeEEEEEehH--HHHHHHHhHHHHhhhcCcchHHHHHHHHHHHHHH
Confidence 999999998644 67888899875 5667788999999999999999998877765544
No 81
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=98.68 E-value=2.7e-07 Score=90.82 Aligned_cols=112 Identities=12% Similarity=0.071 Sum_probs=89.4
Q ss_pred CcceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHH
Q 026239 14 SQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGY 93 (241)
Q Consensus 14 ~~~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~ 93 (241)
...+|+++||++..+..+..+|...|+.+..+.++.+ +.. ..||++|+|+.||++++.
T Consensus 535 ~g~~ili~d~~~~~~~~l~~~L~~~g~~v~~~~~~~~----l~~------------------~~~d~il~~~~~~~~~~~ 592 (919)
T PRK11107 535 AGKRLLYVEPNSAAAQATLDILSETPLEVTYSPTLSQ----LPE------------------AHYDILLLGLPVTFREPL 592 (919)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHCCCEEEEcCCHHH----hcc------------------CCCCEEEecccCCCCCCH
Confidence 3578999999999999999999999999999888877 222 236799999999987766
Q ss_pred HHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhh
Q 026239 94 DLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLK 147 (241)
Q Consensus 94 ~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~ 147 (241)
..+............++|++++.........+.+.|+++|+.||+...+|...+
T Consensus 593 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l 646 (919)
T PRK11107 593 TMLHERLAKAKSMTDFLILALPCHEQVLAEQLKQDGADACLSKPLSHTRLLPAL 646 (919)
T ss_pred HHHHHHHHhhhhcCCcEEEEeCCcchhhHHHHhhCCCceEECCCCCHHHHHHHH
Confidence 555444333222345788888888888888999999999999999998875544
No 82
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=98.46 E-value=2.5e-07 Score=82.98 Aligned_cols=90 Identities=32% Similarity=0.485 Sum_probs=74.3
Q ss_pred CEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEccCCCh
Q 026239 40 YQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVP 119 (241)
Q Consensus 40 ~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~~ll~~ir~~~~~~~ipvIils~~~~~ 119 (241)
++|.++.+|..++..+..+.+| .+++|+.||+++|+++|+.++.... +++++|....+
T Consensus 13 ~~v~~a~~g~~~l~~~~~~~~~------------------~~lld~~m~~~~~~~~~~~lk~~~~----~~v~~t~~~~~ 70 (435)
T COG3706 13 KEVATAKKGLIALAILLDHKPD------------------YKLLDVMMPGMDGFELCRRLKAEPA----TVVMVTALDDS 70 (435)
T ss_pred hhhhhccchHHHHHHHhcCCCC------------------eEEeecccCCcCchhHHHHHhcCCc----ceEEEEecCCC
Confidence 5677799999999998665554 9999999999999999999998653 37888888888
Q ss_pred HHHHHHHHhcccccccCCCCHHHHHHhhHHHH
Q 026239 120 SRISRCLEEGAEEFFLKPVRLSDLNKLKPHLM 151 (241)
Q Consensus 120 ~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~ 151 (241)
....+.+++|+++|++||+....+......+.
T Consensus 71 ~~~~~~~~~~~~~~l~~~~~~~~~~~r~~~l~ 102 (435)
T COG3706 71 APRVRGLKAGADDFLTKPVNDSQLFLRAKSLV 102 (435)
T ss_pred CcchhHHhhhhhhhccCCCChHHHHHhhhhhc
Confidence 88889999999999999998877754444443
No 83
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=98.14 E-value=2.9e-05 Score=57.06 Aligned_cols=106 Identities=16% Similarity=0.173 Sum_probs=72.6
Q ss_pred eEEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHHHHH
Q 026239 17 HVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYDLL 96 (241)
Q Consensus 17 ~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~~ll 96 (241)
||||||||...+..+..+|+-.|+.+..+++..- ....... ..+.+++...-.+ ...+++
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~~-~~~~~~~------------------~~~~~~v~~g~~~-~~~~~l 60 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSDW-SQADWSS------------------PWEACAVILGSCS-KLAELL 60 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHHH-HHhhhhc------------------CCcEEEEEecCch-hHHHHH
Confidence 6999999999999999999999999888776443 2222111 1223333322222 556788
Q ss_pred HHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHH
Q 026239 97 KKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPH 149 (241)
Q Consensus 97 ~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~ 149 (241)
+.+.+..+ .+||+++......... ..+-+-|..|++...|..++.+
T Consensus 61 ~~l~~~~~--~~Pvlllg~~~~~~~~-----~nvvg~Le~Pl~Y~qLt~~L~~ 106 (109)
T PF06490_consen 61 KELLKWAP--HIPVLLLGEHDSPEEL-----PNVVGELEEPLNYPQLTDALHR 106 (109)
T ss_pred HHHHhhCC--CCCEEEECCCCccccc-----cCeeEecCCCCCHHHHHHHHHH
Confidence 88877655 8999999887655111 1156678999999999776654
No 84
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=97.85 E-value=0.00016 Score=43.05 Aligned_cols=55 Identities=35% Similarity=0.598 Sum_probs=46.3
Q ss_pred ceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCC
Q 026239 16 FHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMP 88 (241)
Q Consensus 16 ~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp 88 (241)
++|+++++++..+..+...+...|+.+..+.++..++..+... .++++++|+.++
T Consensus 1 ~~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~vi~~~~~~ 55 (55)
T smart00448 1 MRILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLKEE------------------KPDLILLDIMMP 55 (55)
T ss_pred CeEEEEcCCHHHHHHHHHHHhhcCcEEEEeCCHHHHHHHHHhc------------------CCCEEEEeccCC
Confidence 4799999999999999999998899988999999998887533 355999998653
No 85
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=97.67 E-value=0.0017 Score=48.55 Aligned_cols=104 Identities=15% Similarity=0.161 Sum_probs=74.0
Q ss_pred eCCHHHHHHHHHHhhcCCCEEEEE---CCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCC--CHHHHH
Q 026239 22 DDSIIDRKLIERLLKTSSYQVTTV---DSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGM--TGYDLL 96 (241)
Q Consensus 22 dd~~~~~~~l~~~L~~~g~~v~~~---~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~--~g~~ll 96 (241)
|.+..-..++..+|+..||+|... ...++.++.+....+ |+|.+...+... .--+++
T Consensus 10 d~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~~~~------------------d~V~iS~~~~~~~~~~~~~~ 71 (122)
T cd02071 10 DGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAIQEDV------------------DVIGLSSLSGGHMTLFPEVI 71 (122)
T ss_pred ChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCC------------------CEEEEcccchhhHHHHHHHH
Confidence 566666677888899999999854 356778887765554 488887776532 234667
Q ss_pred HHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHH
Q 026239 97 KKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNK 145 (241)
Q Consensus 97 ~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~ 145 (241)
+.+++... ++ +.|++.+....+...++.++|+++||..-.+.++...
T Consensus 72 ~~L~~~~~-~~-i~i~~GG~~~~~~~~~~~~~G~d~~~~~~~~~~~~~~ 118 (122)
T cd02071 72 ELLRELGA-GD-ILVVGGGIIPPEDYELLKEMGVAEIFGPGTSIEEIID 118 (122)
T ss_pred HHHHhcCC-CC-CEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHH
Confidence 77887643 23 4455665555666788889999999998888877654
No 86
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=97.56 E-value=0.00049 Score=51.01 Aligned_cols=95 Identities=17% Similarity=0.259 Sum_probs=71.0
Q ss_pred HHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCC--CCHHHHHHHHHhcCCCC
Q 026239 29 KLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPG--MTGYDLLKKIKESSSLR 106 (241)
Q Consensus 29 ~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~--~~g~~ll~~ir~~~~~~ 106 (241)
..|...|...|+.|+.+.+.++++..+.. ...+++|++|+. ++ ....++++.|+..+.
T Consensus 7 ~~l~~~L~~~~~~vv~~~~~dd~~~~i~~-----------------~~~i~avvi~~d-~~~~~~~~~ll~~i~~~~~-- 66 (115)
T PF03709_consen 7 RELAEALEQRGREVVDADSTDDALAIIES-----------------FTDIAAVVISWD-GEEEDEAQELLDKIRERNF-- 66 (115)
T ss_dssp HHHHHHHHHTTTEEEEESSHHHHHHHHHC-----------------TTTEEEEEEECH-HHHHHHHHHHHHHHHHHST--
T ss_pred HHHHHHHHHCCCEEEEeCChHHHHHHHHh-----------------CCCeeEEEEEcc-cccchhHHHHHHHHHHhCC--
Confidence 45666777789999999999999999963 345789999997 21 235689999999876
Q ss_pred CCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHH
Q 026239 107 DIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDL 143 (241)
Q Consensus 107 ~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L 143 (241)
.+||.+++.....+.+....-..+++|+...-+..++
T Consensus 67 ~iPVFl~~~~~~~~~l~~~~l~~v~~~i~l~~~t~~f 103 (115)
T PF03709_consen 67 GIPVFLLAERDTTEDLPAEVLGEVDGFIWLFEDTAEF 103 (115)
T ss_dssp T-EEEEEESCCHHHCCCHHHHCCESEEEETTTTTHHH
T ss_pred CCCEEEEecCCCcccCCHHHHhhccEEEEecCCCHHH
Confidence 9999999986644444444455678898887665555
No 87
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=97.34 E-value=0.01 Score=45.36 Aligned_cols=115 Identities=13% Similarity=0.091 Sum_probs=80.4
Q ss_pred cceEEEE----eCCHHHHHHHHHHhhcCCCEEEEE---CCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCC
Q 026239 15 QFHVLAV----DDSIIDRKLIERLLKTSSYQVTTV---DSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCM 87 (241)
Q Consensus 15 ~~~ILiV----dd~~~~~~~l~~~L~~~g~~v~~~---~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~m 87 (241)
..+||+. |.+..-...+..+|+..||+|+.. -+.++.++.+.... +|+|.+...+
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~~------------------~d~V~lS~~~ 64 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIETD------------------ADAILVSSLY 64 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC------------------CCEEEEcCcc
Confidence 4567777 777777788889999999999864 35778888876554 4599998877
Q ss_pred CCC--CHHHHHHHHHhcCCCCCCcEEEEccCC-----ChHHHHHHHHhcccccccCCCCHHHHHHhhH
Q 026239 88 PGM--TGYDLLKKIKESSSLRDIPVVIMSSEN-----VPSRISRCLEEGAEEFFLKPVRLSDLNKLKP 148 (241)
Q Consensus 88 p~~--~g~~ll~~ir~~~~~~~ipvIils~~~-----~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~ 148 (241)
... ...++++.|++... ++++|++-..-. ......++.+.|++.+|....+.+++...+.
T Consensus 65 ~~~~~~~~~~~~~L~~~~~-~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~~~~i~~~l~ 131 (137)
T PRK02261 65 GHGEIDCRGLREKCIEAGL-GDILLYVGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTDPEEAIDDLK 131 (137)
T ss_pred ccCHHHHHHHHHHHHhcCC-CCCeEEEECCCCCCccChHHHHHHHHHcCCCEEECcCCCHHHHHHHHH
Confidence 643 34577888887643 366555433221 2344567889999999998888887755443
No 88
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=97.26 E-value=0.0096 Score=45.24 Aligned_cols=106 Identities=17% Similarity=0.150 Sum_probs=71.7
Q ss_pred eCCHHHHHHHHHHhhcCCCEEEE---ECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCC-CC-HHHHH
Q 026239 22 DDSIIDRKLIERLLKTSSYQVTT---VDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPG-MT-GYDLL 96 (241)
Q Consensus 22 dd~~~~~~~l~~~L~~~g~~v~~---~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~-~~-g~~ll 96 (241)
|-+..-...+..+|+..||+|.. ..+.+++++...... +|+|.+...+.. +. --+++
T Consensus 13 D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~~------------------adii~iSsl~~~~~~~~~~~~ 74 (132)
T TIGR00640 13 DGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVEAD------------------VHVVGVSSLAGGHLTLVPALR 74 (132)
T ss_pred CccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcC------------------CCEEEEcCchhhhHHHHHHHH
Confidence 55566667888999999999984 346788888875544 458877655532 21 23567
Q ss_pred HHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhh
Q 026239 97 KKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLK 147 (241)
Q Consensus 97 ~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~ 147 (241)
+.|++... .+++ |++.+....+......++|+++||..-.+..+....+
T Consensus 75 ~~L~~~g~-~~i~-vivGG~~~~~~~~~l~~~Gvd~~~~~gt~~~~i~~~l 123 (132)
T TIGR00640 75 KELDKLGR-PDIL-VVVGGVIPPQDFDELKEMGVAEIFGPGTPIPESAIFL 123 (132)
T ss_pred HHHHhcCC-CCCE-EEEeCCCChHhHHHHHHCCCCEEECCCCCHHHHHHHH
Confidence 77777653 2444 4455544556677889999999999877777765443
No 89
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=97.08 E-value=0.011 Score=43.83 Aligned_cols=96 Identities=17% Similarity=0.268 Sum_probs=64.7
Q ss_pred eCCHHHHHHHHHHhhcCCCEEEEE---CCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCC--CCHHHHH
Q 026239 22 DDSIIDRKLIERLLKTSSYQVTTV---DSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPG--MTGYDLL 96 (241)
Q Consensus 22 dd~~~~~~~l~~~L~~~g~~v~~~---~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~--~~g~~ll 96 (241)
|.+..-...+..+|+..||+|... .+.++.++.+....| |+|.+...+.. ....+++
T Consensus 10 e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~~~p------------------dvV~iS~~~~~~~~~~~~~i 71 (119)
T cd02067 10 DGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAKEEDA------------------DAIGLSGLLTTHMTLMKEVI 71 (119)
T ss_pred chhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCC------------------CEEEEeccccccHHHHHHHH
Confidence 555666678889999999999754 356677777765544 48888776554 2456788
Q ss_pred HHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCC
Q 026239 97 KKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137 (241)
Q Consensus 97 ~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP 137 (241)
+.+|+..+ .+++|+ +.+.........+.+.|+|.|+...
T Consensus 72 ~~l~~~~~-~~~~i~-vGG~~~~~~~~~~~~~G~D~~~~~~ 110 (119)
T cd02067 72 EELKEAGL-DDIPVL-VGGAIVTRDFKFLKEIGVDAYFGPA 110 (119)
T ss_pred HHHHHcCC-CCCeEE-EECCCCChhHHHHHHcCCeEEECCH
Confidence 88888643 255554 5554444444567889998877643
No 90
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=96.62 E-value=0.07 Score=40.60 Aligned_cols=107 Identities=9% Similarity=0.067 Sum_probs=70.8
Q ss_pred CHHHHHHHHHHhhcCCCEEEE---ECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCC--HHHHHHH
Q 026239 24 SIIDRKLIERLLKTSSYQVTT---VDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMT--GYDLLKK 98 (241)
Q Consensus 24 ~~~~~~~l~~~L~~~g~~v~~---~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~--g~~ll~~ 98 (241)
+..-...+..+|+..||+|+. .-+.++.++....+. +|+|-+...|...- --++.+.
T Consensus 14 HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~~~------------------adiVglS~l~~~~~~~~~~~~~~ 75 (134)
T TIGR01501 14 HAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAAIETK------------------ADAILVSSLYGHGEIDCKGLRQK 75 (134)
T ss_pred hhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC------------------CCEEEEecccccCHHHHHHHHHH
Confidence 344456788899999999985 357788888876544 45888887765322 3456777
Q ss_pred HHhcCCCCCCcEEEEccCC--ChH----HHHHHHHhcccccccCCCCHHHHHHhhHHH
Q 026239 99 IKESSSLRDIPVVIMSSEN--VPS----RISRCLEEGAEEFFLKPVRLSDLNKLKPHL 150 (241)
Q Consensus 99 ir~~~~~~~ipvIils~~~--~~~----~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l 150 (241)
|++... .++ +|++.+.. ..+ ...++.+.|++..|...-.++++...+.+.
T Consensus 76 l~~~gl-~~~-~vivGG~~vi~~~d~~~~~~~l~~~Gv~~vF~pgt~~~~iv~~l~~~ 131 (134)
T TIGR01501 76 CDEAGL-EGI-LLYVGGNLVVGKQDFPDVEKRFKEMGFDRVFAPGTPPEVVIADLKKD 131 (134)
T ss_pred HHHCCC-CCC-EEEecCCcCcChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHH
Confidence 777653 344 45566531 111 234678999999998888888876554443
No 91
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=96.53 E-value=0.04 Score=53.05 Aligned_cols=102 Identities=18% Similarity=0.166 Sum_probs=69.3
Q ss_pred ceEEEEeCCHH------HHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCC
Q 026239 16 FHVLAVDDSII------DRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPG 89 (241)
Q Consensus 16 ~~ILiVdd~~~------~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~ 89 (241)
++|+||+++.. ....|...|+..||.|..+.+..+++.++. ....+++|++|+.-.
T Consensus 1 ~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~- 62 (713)
T PRK15399 1 MNIIAIMGPHGVFYKDEPIKELESALQAQGFQTIWPQNSVDLLKFIE-----------------HNPRICGVIFDWDEY- 62 (713)
T ss_pred CcEEEEecccccccccHHHHHHHHHHHHCCcEEEEecCHHHHHHHHh-----------------cccceeEEEEecccc-
Confidence 46788877731 134456667788999999999999999886 233477999996432
Q ss_pred CCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCC
Q 026239 90 MTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVR 139 (241)
Q Consensus 90 ~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~ 139 (241)
...+++.++.... ++||++++.......+....-.-+++|+..-.+
T Consensus 63 --~~~~~~~~~~~~~--~~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (713)
T PRK15399 63 --SLDLCSDINQLNE--YLPLYAFINTHSTMDVSVQDMRMALWFFEYALG 108 (713)
T ss_pred --hHHHHHHHHHhCC--CCCEEEEcCccccccCChhHhhhcceeeeeccC
Confidence 3568999998875 999999987543333222222335666664443
No 92
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=96.43 E-value=0.004 Score=61.69 Aligned_cols=50 Identities=22% Similarity=0.110 Sum_probs=41.5
Q ss_pred CcceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCC
Q 026239 14 SQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCM 87 (241)
Q Consensus 14 ~~~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~m 87 (241)
...+||||||++..+..+..+|+.+|+.|..++++. ....||+||+|+.+
T Consensus 688 ~g~~vLlvdD~~~~r~~l~~~L~~~G~~v~~a~~~~------------------------~~~~~Dlvl~D~~~ 737 (894)
T PRK10618 688 DGVTVLLDITSEEVRKIVTRQLENWGATCITPDERL------------------------ISQEYDIFLTDNPS 737 (894)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEcCccc------------------------cCCCCCEEEECCCC
Confidence 357999999999999999999999999999887531 12347899999883
No 93
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=96.42 E-value=0.045 Score=52.67 Aligned_cols=100 Identities=15% Similarity=0.196 Sum_probs=67.3
Q ss_pred ceEEEEeCCHH------HHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCC
Q 026239 16 FHVLAVDDSII------DRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPG 89 (241)
Q Consensus 16 ~~ILiVdd~~~------~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~ 89 (241)
++||+|+++.. -...|...|+..||.|..+.+..+++.++.. ...+++|++|+.-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~-- 61 (714)
T PRK15400 1 MNVIAILNHMGVYFKEEPIRELHRALERLNFQIVYPNDRDDLLKLIEN-----------------NARLCGVIFDWDK-- 61 (714)
T ss_pred CcEEEEccccccccccHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhc-----------------ccceeEEEEecch--
Confidence 46788877621 1344566778889999999999999998862 2346799999633
Q ss_pred CCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCC
Q 026239 90 MTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137 (241)
Q Consensus 90 ~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP 137 (241)
....++..++.+.. ++||++++.......+....-.-+++|+..-
T Consensus 62 -~~~~~~~~~~~~~~--~~Pv~~~~~~~~~~~~~~~~l~~~~~~~~~~ 106 (714)
T PRK15400 62 -YNLELCEEISKMNE--NLPLYAFANTYSTLDVSLNDLRLQVSFFEYA 106 (714)
T ss_pred -hhHHHHHHHHHhCC--CCCEEEEccccccccCChHHhhhccceeeec
Confidence 23558999998775 9999999875433322222222355666543
No 94
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=96.32 E-value=0.078 Score=43.15 Aligned_cols=101 Identities=15% Similarity=0.181 Sum_probs=70.6
Q ss_pred cceEEEE----eCCHHHHHHHHHHhhcCCCEEEEEC---CHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCC
Q 026239 15 QFHVLAV----DDSIIDRKLIERLLKTSSYQVTTVD---SGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCM 87 (241)
Q Consensus 15 ~~~ILiV----dd~~~~~~~l~~~L~~~g~~v~~~~---~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~m 87 (241)
..+||+. |-+..=..++..+|+..||+|+... +.++.++.+....| |+|-+...|
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~~~~------------------d~v~lS~~~ 143 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKEHKP------------------DILGLSALM 143 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCC------------------CEEEEeccc
Confidence 4677777 6777777889999999999998542 56778888765544 599998877
Q ss_pred CCC--CHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccC
Q 026239 88 PGM--TGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLK 136 (241)
Q Consensus 88 p~~--~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~K 136 (241)
... ...++++.+++.++..+++|++-...-..+ -+-..|||.|-.-
T Consensus 144 ~~~~~~~~~~i~~lr~~~~~~~~~i~vGG~~~~~~---~~~~~GaD~~~~d 191 (201)
T cd02070 144 TTTMGGMKEVIEALKEAGLRDKVKVMVGGAPVNQE---FADEIGADGYAED 191 (201)
T ss_pred cccHHHHHHHHHHHHHCCCCcCCeEEEECCcCCHH---HHHHcCCcEEECC
Confidence 653 355778888887544467776655444433 3556799888653
No 95
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=96.07 E-value=0.027 Score=49.13 Aligned_cols=64 Identities=23% Similarity=0.160 Sum_probs=43.9
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEE-ccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHH
Q 026239 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIM-SSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHL 150 (241)
Q Consensus 79 dlIilD~~mp~~~g~~ll~~ir~~~~~~~ipvIil-s~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l 150 (241)
.+|++|..+-. .+ +....+ +...+|++ +...+.+....+++.|+.+||.+|++..+|...+..+
T Consensus 21 ~~v~~~~~~~~----~~---~~~~~p-~~~~vv~v~~~~~~~~~~~~a~~~Ga~~~l~~P~~~~~l~~~l~~~ 85 (322)
T TIGR03815 21 PLVLVDADMAE----AC---AAAGLP-RRRRVVLVGGGEPGGALWRAAAAVGAEHVAVLPEAEGWLVELLADL 85 (322)
T ss_pred CeEEECchhhh----HH---HhccCC-CCCCEEEEeCCCCCHHHHHHHHHhChhheeeCCCCHHHHHHHHHhh
Confidence 38999875411 11 122122 23345544 4466788899999999999999999999998777665
No 96
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=95.91 E-value=0.33 Score=37.17 Aligned_cols=110 Identities=18% Similarity=0.227 Sum_probs=73.5
Q ss_pred CcceEEEE----eCCHHHHHHHHHHhhcCCCEEEE---ECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCC
Q 026239 14 SQFHVLAV----DDSIIDRKLIERLLKTSSYQVTT---VDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYC 86 (241)
Q Consensus 14 ~~~~ILiV----dd~~~~~~~l~~~L~~~g~~v~~---~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~ 86 (241)
.+.+||+. |.+..-.+.+.++|...||+|.. ..+.++++...-. .++|+|.+...
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~------------------~dv~vIgvSsl 72 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVE------------------EDVDVIGVSSL 72 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHHh------------------cCCCEEEEEec
Confidence 45677664 67777788999999999999984 6789998887733 23456666432
Q ss_pred CCC-C-CHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHH
Q 026239 87 MPG-M-TGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDL 143 (241)
Q Consensus 87 mp~-~-~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L 143 (241)
--+ + ..-.+.+.+++... .++. +++.+.-.++......+.|++.+|.--....+.
T Consensus 73 ~g~h~~l~~~lve~lre~G~-~~i~-v~~GGvip~~d~~~l~~~G~~~if~pgt~~~~~ 129 (143)
T COG2185 73 DGGHLTLVPGLVEALREAGV-EDIL-VVVGGVIPPGDYQELKEMGVDRIFGPGTPIEEA 129 (143)
T ss_pred cchHHHHHHHHHHHHHHhCC-cceE-EeecCccCchhHHHHHHhCcceeeCCCCCHHHH
Confidence 111 1 12345566676653 3444 355666666667777889999999876666654
No 97
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=95.79 E-value=0.12 Score=42.53 Aligned_cols=104 Identities=14% Similarity=0.182 Sum_probs=70.5
Q ss_pred CcceEEEE----eCCHHHHHHHHHHhhcCCCEEEEEC---CHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCC
Q 026239 14 SQFHVLAV----DDSIIDRKLIERLLKTSSYQVTTVD---SGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYC 86 (241)
Q Consensus 14 ~~~~ILiV----dd~~~~~~~l~~~L~~~g~~v~~~~---~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~ 86 (241)
...+|++. |.+..=..++..+|+..||+|+... ..++.++.+....| |+|.+...
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~~~~~------------------~~V~lS~~ 148 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAKEHKA------------------DIIGLSGL 148 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHcCC------------------CEEEEccc
Confidence 34677777 6777777888889999999998653 57778888765554 49999888
Q ss_pred CCCC--CHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHH---HHHhcccccccCC
Q 026239 87 MPGM--TGYDLLKKIKESSSLRDIPVVIMSSENVPSRISR---CLEEGAEEFFLKP 137 (241)
Q Consensus 87 mp~~--~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~---~l~~Ga~~~l~KP 137 (241)
|+.. .--++++.|++.+. +++|++-....+.+.... +-..|||.|-.-.
T Consensus 149 ~~~~~~~~~~~i~~L~~~~~--~~~i~vGG~~~~~~~~~~~~~~~~~gad~y~~da 202 (213)
T cd02069 149 LVPSLDEMVEVAEEMNRRGI--KIPLLIGGAATSRKHTAVKIAPEYDGPVVYVKDA 202 (213)
T ss_pred hhccHHHHHHHHHHHHhcCC--CCeEEEEChhcCHHHHhhhhccccCCCceEecCH
Confidence 7642 34567888887654 777776555444444322 1346998775433
No 98
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=95.69 E-value=0.1 Score=43.55 Aligned_cols=40 Identities=30% Similarity=0.472 Sum_probs=35.2
Q ss_pred HHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhccccccc
Q 026239 93 YDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFL 135 (241)
Q Consensus 93 ~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~ 135 (241)
.++++.|++.. ++|||+=.+-..++.+..+++.||++++.
T Consensus 164 ~~~I~~I~e~~---~vpVI~egGI~tpeda~~AmelGAdgVlV 203 (248)
T cd04728 164 PYNLRIIIERA---DVPVIVDAGIGTPSDAAQAMELGADAVLL 203 (248)
T ss_pred HHHHHHHHHhC---CCcEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 68899998862 79999988889999999999999999854
No 99
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=95.65 E-value=0.38 Score=36.26 Aligned_cols=102 Identities=11% Similarity=0.131 Sum_probs=68.3
Q ss_pred CHHHHHHHHHHhhcCCCEEEE---ECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCC-CC-HHHHHHH
Q 026239 24 SIIDRKLIERLLKTSSYQVTT---VDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPG-MT-GYDLLKK 98 (241)
Q Consensus 24 ~~~~~~~l~~~L~~~g~~v~~---~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~-~~-g~~ll~~ 98 (241)
+..-...+..+|+..||+|+. .-+.++.++....+. +|+|.+...|.. +. .-++++.
T Consensus 12 HdiGkniv~~~L~~~GfeVidLG~~v~~e~~v~aa~~~~------------------adiVglS~L~t~~~~~~~~~~~~ 73 (128)
T cd02072 12 HAVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDAAIETD------------------ADAILVSSLYGHGEIDCKGLREK 73 (128)
T ss_pred hHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC------------------CCEEEEeccccCCHHHHHHHHHH
Confidence 344456788899999999984 346778888775544 458888776654 32 3467777
Q ss_pred HHhcCCCCCCcEEEEccCC--C----hHHHHHHHHhcccccccCCCCHHHHHH
Q 026239 99 IKESSSLRDIPVVIMSSEN--V----PSRISRCLEEGAEEFFLKPVRLSDLNK 145 (241)
Q Consensus 99 ir~~~~~~~ipvIils~~~--~----~~~~~~~l~~Ga~~~l~KP~~~~~L~~ 145 (241)
+++... ++++|+ +.+.. . .+...++.++|++.+|...-+++++..
T Consensus 74 l~~~gl-~~v~vi-vGG~~~i~~~d~~~~~~~L~~~Gv~~vf~pgt~~~~i~~ 124 (128)
T cd02072 74 CDEAGL-KDILLY-VGGNLVVGKQDFEDVEKRFKEMGFDRVFAPGTPPEEAIA 124 (128)
T ss_pred HHHCCC-CCCeEE-EECCCCCChhhhHHHHHHHHHcCCCEEECcCCCHHHHHH
Confidence 877653 465555 44431 1 334466889999999998777777643
No 100
>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms]
Probab=95.05 E-value=0.15 Score=37.61 Aligned_cols=103 Identities=14% Similarity=0.191 Sum_probs=69.0
Q ss_pred CcceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHH
Q 026239 14 SQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGY 93 (241)
Q Consensus 14 ~~~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~ 93 (241)
...+.+.|+.+.........+|...+.+|+.-.+..+. -...||.+++.+-.+-.+..
T Consensus 10 ~gk~LayiEpNstAA~~t~~iL~~tpleVtyr~t~~~l----------------------p~~hYD~~Ll~vavtfr~n~ 67 (140)
T COG4999 10 AGKRLAYIEPNSTAAQCTLDILSETPLEVTYRPTFSAL----------------------PPAHYDMMLLGVAVTFRENL 67 (140)
T ss_pred ccceeEEecCccHHHHHHHHHHhcCCceEEeccccccc----------------------ChhhhceeeecccccccCCc
Confidence 45788999999999888999999999999865443321 12358899999877654433
Q ss_pred H-----HHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHH
Q 026239 94 D-----LLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDL 143 (241)
Q Consensus 94 ~-----ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L 143 (241)
. +.+.+. ..+.-|+.+-+ ..--.+......|+.++|+||++...|
T Consensus 68 tm~~~~l~~Al~----mtd~vilalPs-~~qv~AeqLkQ~g~~~CllKPls~~rL 117 (140)
T COG4999 68 TMQHERLAKALS----MTDFVILALPS-HAQVNAEQLKQDGAGACLLKPLSSTRL 117 (140)
T ss_pred hHHHHHHHHHHh----hhcceEEecCc-HHHHhHHHHhhcchHhHhhCcchhhhh
Confidence 3 333332 22333433333 233345567789999999999987655
No 101
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=95.00 E-value=0.27 Score=39.88 Aligned_cols=100 Identities=13% Similarity=0.131 Sum_probs=65.2
Q ss_pred cceEEEE----eCCHHHHHHHHHHhhcCCCEEEEEC---CHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCC
Q 026239 15 QFHVLAV----DDSIIDRKLIERLLKTSSYQVTTVD---SGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCM 87 (241)
Q Consensus 15 ~~~ILiV----dd~~~~~~~l~~~L~~~g~~v~~~~---~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~m 87 (241)
..+|++. |.+..=...+..+|+..||+|+... ..++.++.+....| |+|-+...|
T Consensus 84 ~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~~~p------------------d~v~lS~~~ 145 (197)
T TIGR02370 84 LGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKKEKP------------------LMLTGSALM 145 (197)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCC------------------CEEEEcccc
Confidence 3455544 3445556778888999999998543 56778888865554 499998877
Q ss_pred CCC--CHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhccccccc
Q 026239 88 PGM--TGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFL 135 (241)
Q Consensus 88 p~~--~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~ 135 (241)
... .-.++++.+++.+...+++|++-...-.+. -+.+.|||.|-.
T Consensus 146 ~~~~~~~~~~i~~l~~~~~~~~v~i~vGG~~~~~~---~~~~~gad~~~~ 192 (197)
T TIGR02370 146 TTTMYGQKDINDKLKEEGYRDSVKFMVGGAPVTQD---WADKIGADVYGE 192 (197)
T ss_pred ccCHHHHHHHHHHHHHcCCCCCCEEEEEChhcCHH---HHHHhCCcEEeC
Confidence 642 235677888887543456666544443332 355779998854
No 102
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=94.90 E-value=0.39 Score=35.18 Aligned_cols=92 Identities=17% Similarity=0.271 Sum_probs=58.9
Q ss_pred CHHHHHHHHHHhhcCCCEEEEEC---CHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCC-CCCC-CHHHHHHH
Q 026239 24 SIIDRKLIERLLKTSSYQVTTVD---SGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYC-MPGM-TGYDLLKK 98 (241)
Q Consensus 24 ~~~~~~~l~~~L~~~g~~v~~~~---~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~-mp~~-~g~~ll~~ 98 (241)
.+.-...+..+|+..||+|...+ +.++..+.+.... ||+|.+... .+.. ...++++.
T Consensus 13 ~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~------------------pd~V~iS~~~~~~~~~~~~l~~~ 74 (121)
T PF02310_consen 13 HPLGLLYLAAYLRKAGHEVDILDANVPPEELVEALRAER------------------PDVVGISVSMTPNLPEAKRLARA 74 (121)
T ss_dssp TSHHHHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTT------------------CSEEEEEESSSTHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCC------------------CcEEEEEccCcCcHHHHHHHHHH
Confidence 45667788999999999998763 3466667775554 459999873 3333 35677888
Q ss_pred HHhcCCCCCCcEEEEccCCChHHHHHHHH--hcccccccC
Q 026239 99 IKESSSLRDIPVVIMSSENVPSRISRCLE--EGAEEFFLK 136 (241)
Q Consensus 99 ir~~~~~~~ipvIils~~~~~~~~~~~l~--~Ga~~~l~K 136 (241)
+|+..+ +++||+ .+......-..+++ .|+|..+.-
T Consensus 75 ~k~~~p--~~~iv~-GG~~~t~~~~~~l~~~~~~D~vv~G 111 (121)
T PF02310_consen 75 IKERNP--NIPIVV-GGPHATADPEEILREYPGIDYVVRG 111 (121)
T ss_dssp HHTTCT--TSEEEE-EESSSGHHHHHHHHHHHTSEEEEEE
T ss_pred HHhcCC--CCEEEE-ECCchhcChHHHhccCcCcceecCC
Confidence 887654 666654 44443444445555 677765543
No 103
>PRK00208 thiG thiazole synthase; Reviewed
Probab=94.88 E-value=0.35 Score=40.50 Aligned_cols=48 Identities=25% Similarity=0.356 Sum_probs=38.8
Q ss_pred HHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhccccccc-----CCCCHHHH
Q 026239 93 YDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFL-----KPVRLSDL 143 (241)
Q Consensus 93 ~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~-----KP~~~~~L 143 (241)
.++++.|++.. ++|||+=.+-..++.+..+++.|+++++. |.-++..+
T Consensus 164 ~~~i~~i~e~~---~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItka~dP~~m 216 (250)
T PRK00208 164 PYNLRIIIEQA---DVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVAGDPVAM 216 (250)
T ss_pred HHHHHHHHHhc---CCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhCCCCHHHH
Confidence 68899998862 78999999999999999999999999854 53345554
No 104
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=93.72 E-value=1.1 Score=43.63 Aligned_cols=112 Identities=18% Similarity=0.170 Sum_probs=71.8
Q ss_pred CcceEEEE----eCCHHHHHHHHHHhhcCCCEEEE---ECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCC
Q 026239 14 SQFHVLAV----DDSIIDRKLIERLLKTSSYQVTT---VDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYC 86 (241)
Q Consensus 14 ~~~~ILiV----dd~~~~~~~l~~~L~~~g~~v~~---~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~ 86 (241)
...+|++. |.+..-...+..+|...||+|.. ..+.+++.+...... +|+|++-..
T Consensus 581 ~rpkV~LatlG~d~H~~ra~fv~~~l~~~GfeV~~~~~~~s~e~~v~aa~~~~------------------a~ivvlcs~ 642 (714)
T PRK09426 581 RRPRILVAKMGQDGHDRGAKVIATAFADLGFDVDIGPLFQTPEEAARQAVEND------------------VHVVGVSSL 642 (714)
T ss_pred CCceEEEEecCCcchhHhHHHHHHHHHhCCeeEecCCCCCCHHHHHHHHHHcC------------------CCEEEEecc
Confidence 34566543 34455556788899999999963 246778888775544 447776444
Q ss_pred CCC-C-CHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHH
Q 026239 87 MPG-M-TGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNK 145 (241)
Q Consensus 87 mp~-~-~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~ 145 (241)
+.. + ..-.+++.|++.+. .+++|+ +.+...+.....+.+.|+++||..-.+..++..
T Consensus 643 d~~~~e~~~~l~~~Lk~~G~-~~v~vl-~GG~~~~~~~~~l~~aGvD~~i~~g~d~~~~L~ 701 (714)
T PRK09426 643 AAGHKTLVPALIEALKKLGR-EDIMVV-VGGVIPPQDYDFLYEAGVAAIFGPGTVIADAAI 701 (714)
T ss_pred chhhHHHHHHHHHHHHhcCC-CCcEEE-EeCCCChhhHHHHHhCCCCEEECCCCCHHHHHH
Confidence 432 2 24578888888652 234444 554433444566788999999998888776644
No 105
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=93.67 E-value=0.66 Score=38.56 Aligned_cols=108 Identities=17% Similarity=0.206 Sum_probs=62.1
Q ss_pred cceEEEEeCCHH----HHHH--HHHHhhcCCCEEEEE--CCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCC
Q 026239 15 QFHVLAVDDSII----DRKL--IERLLKTSSYQVTTV--DSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYC 86 (241)
Q Consensus 15 ~~~ILiVdd~~~----~~~~--l~~~L~~~g~~v~~~--~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~ 86 (241)
-+++=|+.|+.. ..+. -.+.|-..||.|..+ +|.--|-++.. ... .+++-+.
T Consensus 93 wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlPY~~~D~v~akrL~d-~Gc-------------------aavMPlg 152 (247)
T PF05690_consen 93 WIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLED-AGC-------------------AAVMPLG 152 (247)
T ss_dssp EEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EEEEEE-S-HHHHHHHHH-TT--------------------SEBEEBS
T ss_pred eEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEEeecCCCCHHHHHHHHH-CCC-------------------CEEEecc
Confidence 356666666532 1222 234455679999833 44444443332 111 4666777
Q ss_pred CCCCCH-----HHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccC-----CCCHHHHHH
Q 026239 87 MPGMTG-----YDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLK-----PVRLSDLNK 145 (241)
Q Consensus 87 mp~~~g-----~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~K-----P~~~~~L~~ 145 (241)
-|-.+| ...++.|++.. ++|||+=.+-..++.+..+++.|++++|.- --++-.+.+
T Consensus 153 sPIGSg~Gi~n~~~l~~i~~~~---~vPvIvDAGiG~pSdaa~AMElG~daVLvNTAiA~A~dPv~MA~ 218 (247)
T PF05690_consen 153 SPIGSGRGIQNPYNLRIIIERA---DVPVIVDAGIGTPSDAAQAMELGADAVLVNTAIAKAKDPVAMAR 218 (247)
T ss_dssp SSTTT---SSTHHHHHHHHHHG---SSSBEEES---SHHHHHHHHHTT-SEEEESHHHHTSSSHHHHHH
T ss_pred cccccCcCCCCHHHHHHHHHhc---CCcEEEeCCCCCHHHHHHHHHcCCceeehhhHHhccCCHHHHHH
Confidence 775554 35788888764 799999999999999999999999999764 345555543
No 106
>PF07688 KaiA: KaiA domain; InterPro: IPR011648 KaiA is a component of the kaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. The kaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction. In the complex, KaiA enhances the phosphorylation status of kaiC. In contrast, the presence of kaiB in the complex decreases the phosphorylation status of kaiC, suggesting that kaiB acts by antagonising the interaction between kaiA and kaiC. The activity of KaiA activates kaiBC expression, while KaiC represses it. The overall fold of the KaiA monomer is that of a four-helix bundle, which forms a dimer in the known structure []. KaiA functions as a homodimer. Each monomer is composed of three functional domains: the N-terminal amplitude-amplifier domain, the central period-adjuster domain and the C-termianl clock-oscillator domain. The N-terminal domain of KaiA, from cyanobacteria, acts as a psuedo-receiver domain, but lacks the conserved aspartyl residue required for phosphotransfer in response regulators []. The C-terminal domain is responsible for dimer formation, binding to KaiC, enhancing KaiC phosphorylation and generating the circadian oscillations []. The KaiA protein from Anabaena sp. (strain PCC 7120) lacks the N-terminal CheY-like domain.; GO: 0006468 protein phosphorylation, 0007623 circadian rhythm; PDB: 1V2Z_A 1Q6B_B 1Q6A_A 1SV1_B 1SUY_B 1R5Q_A 1M2E_A 1R8J_B 1M2F_A.
Probab=93.59 E-value=0.89 Score=38.18 Aligned_cols=79 Identities=22% Similarity=0.280 Sum_probs=55.9
Q ss_pred eEEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHHHHH
Q 026239 17 HVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYDLL 96 (241)
Q Consensus 17 ~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~~ll 96 (241)
.|.+.-.++.....+..+|...-|.+..++++.+.++++..+. ..+|++|+.... .-..++
T Consensus 2 sI~~~v~s~~Laqsl~~~L~~dRY~l~~~~s~~ef~~~le~~~----------------e~iDCLvle~~~---~~~~~~ 62 (283)
T PF07688_consen 2 SICLLVSSPALAQSLRQWLPGDRYELVQVDSPEEFLEFLEQHR----------------EQIDCLVLEQSP---LLPPLF 62 (283)
T ss_dssp EEEEE-S-HHHHHHHHHHT-STTEEEEEESSCHHHHHHHCCTT----------------TT-SEEEEETTS---TTHHHH
T ss_pred eEEEEeCCHHHHHHHHHHcccCceEEEEcCcHHHHHHHHHhch----------------hccCEEEEecCC---CcHHHH
Confidence 3555666778888899999888899999999999999997644 348899998754 446788
Q ss_pred HHHHhcCCCCCCcEEEEccC
Q 026239 97 KKIKESSSLRDIPVVIMSSE 116 (241)
Q Consensus 97 ~~ir~~~~~~~ipvIils~~ 116 (241)
..+.+.+. -+|+|++.+.
T Consensus 63 ~~L~e~g~--LLPaVil~~~ 80 (283)
T PF07688_consen 63 NQLYEQGI--LLPAVILGSS 80 (283)
T ss_dssp HHHHHCT------EEEES--
T ss_pred HHHHHcCc--cccEEEEecC
Confidence 88988775 6899999764
No 107
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=93.46 E-value=1.1 Score=36.78 Aligned_cols=43 Identities=26% Similarity=0.450 Sum_probs=35.6
Q ss_pred CHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccC
Q 026239 91 TGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLK 136 (241)
Q Consensus 91 ~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~K 136 (241)
.++++++.++... ++||+...+-.+.+.+..+++.||++++.=
T Consensus 160 ~~~~~i~~i~~~~---~iPvia~GGI~t~~~~~~~l~~GadgV~iG 202 (221)
T PRK01130 160 PDFALLKELLKAV---GCPVIAEGRINTPEQAKKALELGAHAVVVG 202 (221)
T ss_pred cCHHHHHHHHHhC---CCCEEEECCCCCHHHHHHHHHCCCCEEEEc
Confidence 3578899998753 689999888888999999999999988654
No 108
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=93.12 E-value=1.5 Score=31.77 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=27.8
Q ss_pred CCChHHHHHHHHhcccccccCCC--CHHHHHHhhHHHH
Q 026239 116 ENVPSRISRCLEEGAEEFFLKPV--RLSDLNKLKPHLM 151 (241)
Q Consensus 116 ~~~~~~~~~~l~~Ga~~~l~KP~--~~~~L~~~~~~l~ 151 (241)
....+.+..+++.|.+=|+-||+ +.+++.+++....
T Consensus 73 ~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~ 110 (120)
T PF01408_consen 73 SSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAK 110 (120)
T ss_dssp GGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHH
Confidence 34567788999999999999998 6777777665543
No 109
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=93.04 E-value=2.8 Score=33.87 Aligned_cols=56 Identities=27% Similarity=0.466 Sum_probs=42.1
Q ss_pred cccEEEEeCCCCCC--------CHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhccccccc
Q 026239 77 GVNLVITDYCMPGM--------TGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFL 135 (241)
Q Consensus 77 ~~dlIilD~~mp~~--------~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~ 135 (241)
.+|.|.++-..|.. .|++.++++++... ++||++..+- +.+.+..++..||+++..
T Consensus 124 gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~v~a~GGI-~~~~i~~~~~~Ga~gv~~ 187 (212)
T PRK00043 124 GADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVG--DIPIVAIGGI-TPENAPEVLEAGADGVAV 187 (212)
T ss_pred CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcC--CCCEEEECCc-CHHHHHHHHHcCCCEEEE
Confidence 46788877555533 35899999987542 5899988776 578888999999998864
No 110
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=92.96 E-value=4 Score=34.40 Aligned_cols=110 Identities=21% Similarity=0.218 Sum_probs=70.6
Q ss_pred ceEEEEeCC-------HHHHHHHHHHhhcCCCEEEEE--CCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCC
Q 026239 16 FHVLAVDDS-------IIDRKLIERLLKTSSYQVTTV--DSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYC 86 (241)
Q Consensus 16 ~~ILiVdd~-------~~~~~~l~~~L~~~g~~v~~~--~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~ 86 (241)
+++=|+.|+ ....+.. +.|-..||.|..+ +|.--|-++... .. ..++-+.
T Consensus 108 IKLEVi~D~~~LlPD~~etl~Aa-e~Lv~eGF~VlPY~~~D~v~a~rLed~-Gc-------------------~aVMPlg 166 (267)
T CHL00162 108 VKLEVISDPKYLLPDPIGTLKAA-EFLVKKGFTVLPYINADPMLAKHLEDI-GC-------------------ATVMPLG 166 (267)
T ss_pred EEEEEeCCCcccCCChHHHHHHH-HHHHHCCCEEeecCCCCHHHHHHHHHc-CC-------------------eEEeecc
Confidence 455566433 2333333 3455679999843 344444333321 11 5667777
Q ss_pred CCCCCH-----HHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhccccccc-----CCCCHHHHHHhhHH
Q 026239 87 MPGMTG-----YDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFL-----KPVRLSDLNKLKPH 149 (241)
Q Consensus 87 mp~~~g-----~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~-----KP~~~~~L~~~~~~ 149 (241)
-|-.+| -..++.|++.. ++|||+-.+-..++.+..+++.|+++.+. |--++.++.+...+
T Consensus 167 sPIGSg~Gl~n~~~l~~i~e~~---~vpVivdAGIgt~sDa~~AmElGaDgVL~nSaIakA~dP~~mA~a~~~ 236 (267)
T CHL00162 167 SPIGSGQGLQNLLNLQIIIENA---KIPVIIDAGIGTPSEASQAMELGASGVLLNTAVAQAKNPEQMAKAMKL 236 (267)
T ss_pred CcccCCCCCCCHHHHHHHHHcC---CCcEEEeCCcCCHHHHHHHHHcCCCEEeecceeecCCCHHHHHHHHHH
Confidence 774443 35688888754 79999999999999999999999999854 55677666554433
No 111
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=92.95 E-value=1.1 Score=37.22 Aligned_cols=54 Identities=26% Similarity=0.402 Sum_probs=44.6
Q ss_pred EEEEeCCCCCCCHH-----HHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccC
Q 026239 80 LVITDYCMPGMTGY-----DLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLK 136 (241)
Q Consensus 80 lIilD~~mp~~~g~-----~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~K 136 (241)
..++-+.-|-.+|. ..++.|++.. ++|||+=.+-..++.+..+++.|+|++|.-
T Consensus 153 aavMPl~aPIGSg~G~~n~~~l~iiie~a---~VPviVDAGiG~pSdAa~aMElG~DaVL~N 211 (262)
T COG2022 153 AAVMPLGAPIGSGLGLQNPYNLEIIIEEA---DVPVIVDAGIGTPSDAAQAMELGADAVLLN 211 (262)
T ss_pred eEeccccccccCCcCcCCHHHHHHHHHhC---CCCEEEeCCCCChhHHHHHHhcccceeehh
Confidence 67778888865554 5677788754 899999999999999999999999999875
No 112
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=92.64 E-value=1.6 Score=30.89 Aligned_cols=29 Identities=17% Similarity=0.141 Sum_probs=25.4
Q ss_pred eEEEEeCCHHHHHHHHHHhhcCCCEEEEE
Q 026239 17 HVLAVDDSIIDRKLIERLLKTSSYQVTTV 45 (241)
Q Consensus 17 ~ILiVdd~~~~~~~l~~~L~~~g~~v~~~ 45 (241)
+||||.........++..++..|+.....
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~h 29 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHH 29 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEE
Confidence 48999998888888999999999988877
No 113
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=91.98 E-value=2.2 Score=36.16 Aligned_cols=71 Identities=15% Similarity=0.165 Sum_probs=52.1
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCC-CHHHHHHhhH
Q 026239 77 GVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPV-RLSDLNKLKP 148 (241)
Q Consensus 77 ~~dlIilD~~mp~~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~-~~~~L~~~~~ 148 (241)
.||.|++|+.-...+--++...++..... .++.++=....++..+.++++.|+++++.--+ +.++..+++.
T Consensus 40 G~D~v~iD~EHg~~~~~~~~~~i~a~~~~-g~~~lVRvp~~~~~~i~r~LD~Ga~giivP~v~tae~a~~~v~ 111 (256)
T PRK10558 40 GFDWLVLDGEHAPNDVSTFIPQLMALKGS-ASAPVVRVPTNEPVIIKRLLDIGFYNFLIPFVETAEEARRAVA 111 (256)
T ss_pred CCCEEEEccccCCCCHHHHHHHHHHHhhc-CCCcEEECCCCCHHHHHHHhCCCCCeeeecCcCCHHHHHHHHH
Confidence 46799999999888888887777755432 45555555667889999999999999977544 4566655543
No 114
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=91.21 E-value=3.1 Score=35.06 Aligned_cols=70 Identities=16% Similarity=0.163 Sum_probs=52.2
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCC-CHHHHHHhh
Q 026239 77 GVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPV-RLSDLNKLK 147 (241)
Q Consensus 77 ~~dlIilD~~mp~~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~-~~~~L~~~~ 147 (241)
.||.|++|+.-..++--++...++..... .++.++=....++..+.++++.|+++++.-=+ +.++..+++
T Consensus 33 G~D~v~iD~EHg~~~~~~~~~~~~a~~~~-g~~~~VRvp~~~~~~i~r~LD~Ga~gIivP~v~taeea~~~v 103 (249)
T TIGR03239 33 GFDWLLLDGEHAPNDVLTFIPQLMALKGS-ASAPVVRPPWNEPVIIKRLLDIGFYNFLIPFVESAEEAERAV 103 (249)
T ss_pred CCCEEEEecccCCCCHHHHHHHHHHHhhc-CCCcEEECCCCCHHHHHHHhcCCCCEEEecCcCCHHHHHHHH
Confidence 36799999999988888887777765432 45555555667889999999999999977544 456665554
No 115
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=91.18 E-value=2.8 Score=30.27 Aligned_cols=94 Identities=16% Similarity=0.167 Sum_probs=57.4
Q ss_pred CcceEEEEeCCHHHHHHHHHHhhcCCCEEEEEC-CHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCH
Q 026239 14 SQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVD-SGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTG 92 (241)
Q Consensus 14 ~~~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~-~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g 92 (241)
...+|++||.++..... +...|+.+...+ +-.+.|+.+... ..+.||+...- +...
T Consensus 20 ~~~~vvvid~d~~~~~~----~~~~~~~~i~gd~~~~~~l~~a~i~------------------~a~~vv~~~~~-d~~n 76 (116)
T PF02254_consen 20 GGIDVVVIDRDPERVEE----LREEGVEVIYGDATDPEVLERAGIE------------------KADAVVILTDD-DEEN 76 (116)
T ss_dssp TTSEEEEEESSHHHHHH----HHHTTSEEEES-TTSHHHHHHTTGG------------------CESEEEEESSS-HHHH
T ss_pred CCCEEEEEECCcHHHHH----HHhcccccccccchhhhHHhhcCcc------------------ccCEEEEccCC-HHHH
Confidence 34689999998776443 334567666544 334556655433 24577776542 2445
Q ss_pred HHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccc
Q 026239 93 YDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFF 134 (241)
Q Consensus 93 ~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l 134 (241)
+.++..+|+..+ ..+|++... +......+..+|++..+
T Consensus 77 ~~~~~~~r~~~~--~~~ii~~~~--~~~~~~~l~~~g~d~vi 114 (116)
T PF02254_consen 77 LLIALLARELNP--DIRIIARVN--DPENAELLRQAGADHVI 114 (116)
T ss_dssp HHHHHHHHHHTT--TSEEEEEES--SHHHHHHHHHTT-SEEE
T ss_pred HHHHHHHHHHCC--CCeEEEEEC--CHHHHHHHHHCCcCEEE
Confidence 677788887654 677776664 34556666778997665
No 116
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=91.10 E-value=3.1 Score=35.43 Aligned_cols=72 Identities=18% Similarity=0.206 Sum_probs=51.7
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCC-CHHHHHHhhHH
Q 026239 77 GVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPV-RLSDLNKLKPH 149 (241)
Q Consensus 77 ~~dlIilD~~mp~~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~-~~~~L~~~~~~ 149 (241)
.||.|++|+.-...+--++...++..... .++.++=....+...+.++|+.||++++.--+ +.++..+++..
T Consensus 39 GfD~v~iD~EHg~~~~~~l~~~i~a~~~~-g~~~lVRvp~~~~~~i~r~LD~GA~GIivP~V~saeeA~~~V~a 111 (267)
T PRK10128 39 GYDWLLIDGEHAPNTIQDLYHQLQAIAPY-ASQPVIRPVEGSKPLIKQVLDIGAQTLLIPMVDTAEQARQVVSA 111 (267)
T ss_pred CCCEEEEccccCCCCHHHHHHHHHHHHhc-CCCeEEECCCCCHHHHHHHhCCCCCeeEecCcCCHHHHHHHHHh
Confidence 36799999999888877777777654433 34445555667889999999999999988655 45555544433
No 117
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=91.06 E-value=2.5 Score=33.78 Aligned_cols=55 Identities=25% Similarity=0.409 Sum_probs=40.2
Q ss_pred cccEEEEeCCCCC--------CCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccc
Q 026239 77 GVNLVITDYCMPG--------MTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFF 134 (241)
Q Consensus 77 ~~dlIilD~~mp~--------~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l 134 (241)
.+|.|.++-..+. ..|++.++++....+ ++||+++.+- +.+.+..+++.|++++.
T Consensus 116 g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~--~~pv~a~GGI-~~~~~~~~~~~G~~gva 178 (196)
T TIGR00693 116 GADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSI--DIPIVAIGGI-TLENAAEVLAAGADGVA 178 (196)
T ss_pred CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcC--CCCEEEECCc-CHHHHHHHHHcCCCEEE
Confidence 4678887665542 237899999986533 5898888665 57888889999998764
No 118
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=91.03 E-value=2.2 Score=36.54 Aligned_cols=94 Identities=18% Similarity=0.233 Sum_probs=60.5
Q ss_pred EEEEeCCHHHHHHHHHHhhc---CC--CEE-EEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCC
Q 026239 18 VLAVDDSIIDRKLIERLLKT---SS--YQV-TTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMT 91 (241)
Q Consensus 18 ILiVdd~~~~~~~l~~~L~~---~g--~~v-~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~ 91 (241)
|||-|++.... .+...+.. .. ..| +.+++.+++.+.+.. .+|+|.+|-..| .+
T Consensus 157 vLikdnHi~~~-~i~~av~~~r~~~~~~kIeVEv~~leea~~a~~a-------------------gaDiI~LDn~~~-e~ 215 (278)
T PRK08385 157 ILIKDNHLALV-PLEEAIRRAKEFSVYKVVEVEVESLEDALKAAKA-------------------GADIIMLDNMTP-EE 215 (278)
T ss_pred EEEccCHHHHH-HHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHc-------------------CcCEEEECCCCH-HH
Confidence 78888886555 45555432 21 233 378999999998842 356999995433 23
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhccccc
Q 026239 92 GYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEF 133 (241)
Q Consensus 92 g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~ 133 (241)
--++++.++.... +.-..+..|+.-+.+.+....+.|+|.+
T Consensus 216 l~~~v~~l~~~~~-~~~~~leaSGGI~~~ni~~yA~tGvD~I 256 (278)
T PRK08385 216 IREVIEALKREGL-RERVKIEVSGGITPENIEEYAKLDVDVI 256 (278)
T ss_pred HHHHHHHHHhcCc-CCCEEEEEECCCCHHHHHHHHHcCCCEE
Confidence 3344555554331 1234667788888899999999998755
No 119
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=90.71 E-value=2.5 Score=36.79 Aligned_cols=84 Identities=20% Similarity=0.216 Sum_probs=57.4
Q ss_pred HHHHhhcCCCEEE-EECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCC-----CCCHHHHHHHHHhcCC
Q 026239 31 IERLLKTSSYQVT-TVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMP-----GMTGYDLLKKIKESSS 104 (241)
Q Consensus 31 l~~~L~~~g~~v~-~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp-----~~~g~~ll~~ir~~~~ 104 (241)
+...++..|..|. .+.+.++|..+.. ..+|.|++.-.-. ...-+.+++.+++..
T Consensus 101 ~i~~lk~~g~~v~~~v~s~~~a~~a~~-------------------~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~- 160 (307)
T TIGR03151 101 YIPRLKENGVKVIPVVASVALAKRMEK-------------------AGADAVIAEGMESGGHIGELTTMALVPQVVDAV- 160 (307)
T ss_pred HHHHHHHcCCEEEEEcCCHHHHHHHHH-------------------cCCCEEEEECcccCCCCCCCcHHHHHHHHHHHh-
Confidence 3344555676554 5667777765543 2456787743222 223588999998753
Q ss_pred CCCCcEEEEccCCChHHHHHHHHhcccccccC
Q 026239 105 LRDIPVVIMSSENVPSRISRCLEEGAEEFFLK 136 (241)
Q Consensus 105 ~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~K 136 (241)
++|||+-.+-.+...+..++..||+++..=
T Consensus 161 --~iPviaaGGI~~~~~~~~al~~GA~gV~iG 190 (307)
T TIGR03151 161 --SIPVIAAGGIADGRGMAAAFALGAEAVQMG 190 (307)
T ss_pred --CCCEEEECCCCCHHHHHHHHHcCCCEeecc
Confidence 689999888888888999999999987543
No 120
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=90.71 E-value=6.6 Score=32.02 Aligned_cols=80 Identities=16% Similarity=0.241 Sum_probs=51.6
Q ss_pred hcCCCEEE-EECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEe-CCCC-CCCHHHHHHHHHhcCCCCCCcEEE
Q 026239 36 KTSSYQVT-TVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITD-YCMP-GMTGYDLLKKIKESSSLRDIPVVI 112 (241)
Q Consensus 36 ~~~g~~v~-~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD-~~mp-~~~g~~ll~~ir~~~~~~~ipvIi 112 (241)
...|..+. .+.+.+++...... .+|.+.+. .... ...++++++.++...+ .++|||.
T Consensus 118 ~~~g~~~~v~v~~~~e~~~~~~~-------------------g~~~i~~t~~~~~~~~~~~~~~~~l~~~~~-~~~pvia 177 (217)
T cd00331 118 RELGMEVLVEVHDEEELERALAL-------------------GAKIIGINNRDLKTFEVDLNTTERLAPLIP-KDVILVS 177 (217)
T ss_pred HHcCCeEEEEECCHHHHHHHHHc-------------------CCCEEEEeCCCccccCcCHHHHHHHHHhCC-CCCEEEE
Confidence 44676654 55677776555532 23355443 1111 1234678888876531 3689999
Q ss_pred EccCCChHHHHHHHHhccccccc
Q 026239 113 MSSENVPSRISRCLEEGAEEFFL 135 (241)
Q Consensus 113 ls~~~~~~~~~~~l~~Ga~~~l~ 135 (241)
..+-...+.+.+++++||++++.
T Consensus 178 ~gGI~s~edi~~~~~~Ga~gviv 200 (217)
T cd00331 178 ESGISTPEDVKRLAEAGADAVLI 200 (217)
T ss_pred EcCCCCHHHHHHHHHcCCCEEEE
Confidence 99988889999999999999854
No 121
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=90.52 E-value=4.2 Score=33.32 Aligned_cols=43 Identities=28% Similarity=0.559 Sum_probs=35.9
Q ss_pred CHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccC
Q 026239 91 TGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLK 136 (241)
Q Consensus 91 ~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~K 136 (241)
.++++++.++... ++||+...+-.+.+.+.+++..||++++.-
T Consensus 164 ~~~~~l~~i~~~~---~ipvia~GGI~~~~~~~~~l~~GadgV~vG 206 (219)
T cd04729 164 PDFELLKELRKAL---GIPVIAEGRINSPEQAAKALELGADAVVVG 206 (219)
T ss_pred CCHHHHHHHHHhc---CCCEEEeCCCCCHHHHHHHHHCCCCEEEEc
Confidence 4578999998753 699999888888999999999999988654
No 122
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=90.39 E-value=6.1 Score=31.42 Aligned_cols=87 Identities=13% Similarity=0.184 Sum_probs=58.5
Q ss_pred cceEEEEeCCHHHHHHHHHHhhcCC--CEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCH
Q 026239 15 QFHVLAVDDSIIDRKLIERLLKTSS--YQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTG 92 (241)
Q Consensus 15 ~~~ILiVdd~~~~~~~l~~~L~~~g--~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g 92 (241)
--+++|+.+++..+..+++++..+| |.|..+.+..++++-+... ...+.|+..+....+ .
T Consensus 31 a~~~yiv~~~~~q~~~v~~I~~~WGg~fnv~~~~s~~~~i~~~k~~----------------G~vvhLtmyga~~~~--~ 92 (176)
T PRK03958 31 ADKIILASNDEHVKESVEDIVERWGGPFEVEVTKSWKKEIREWKDG----------------GIVVHLTMYGENIQD--V 92 (176)
T ss_pred CceEEEecCcHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHHHHhC----------------CcEEEEEEecCCccc--h
Confidence 3578999999999999999999987 7788999999999988621 123557777777655 4
Q ss_pred HHHHHHHHhcCCCCCCcEEE-EccCCChHHHH
Q 026239 93 YDLLKKIKESSSLRDIPVVI-MSSENVPSRIS 123 (241)
Q Consensus 93 ~~ll~~ir~~~~~~~ipvIi-ls~~~~~~~~~ 123 (241)
++-++..-.. .-|+++ +.+...+..+.
T Consensus 93 ~~~ir~~~~~----~~p~LIvvGg~gvp~evy 120 (176)
T PRK03958 93 EPEIREAHRK----GEPLLIVVGAEKVPREVY 120 (176)
T ss_pred HHHHHHhhcc----CCcEEEEEcCCCCCHHHH
Confidence 4444332211 224444 44555555443
No 123
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=90.16 E-value=1 Score=38.16 Aligned_cols=59 Identities=20% Similarity=0.436 Sum_probs=44.4
Q ss_pred CHHHHHHHHHhcCCCCCCcEEEEccCCC------hHHHHHHHHhcccccccCCCCHHHHHHhhHHHH
Q 026239 91 TGYDLLKKIKESSSLRDIPVVIMSSENV------PSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLM 151 (241)
Q Consensus 91 ~g~~ll~~ir~~~~~~~ipvIils~~~~------~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~ 151 (241)
+.+++++.+|+... ++|+++|+-.+. ...+..+.++|+++++.-....++...++..+.
T Consensus 73 ~~~~~v~~ir~~~~--~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~ 137 (256)
T TIGR00262 73 KCFELLKKVRQKHP--NIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAK 137 (256)
T ss_pred HHHHHHHHHHhcCC--CCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHH
Confidence 45777888886432 789888887765 667889999999999888777777766665554
No 124
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=90.10 E-value=0.87 Score=36.93 Aligned_cols=47 Identities=19% Similarity=0.317 Sum_probs=38.0
Q ss_pred CCcEEEEccC------CChHHHHHHHHhcccccccCCCCHHHHHHhhHHHHHH
Q 026239 107 DIPVVIMSSE------NVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMKT 153 (241)
Q Consensus 107 ~ipvIils~~------~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~~~ 153 (241)
.+|||+|+-+ .+...+..+.++||++||.-.+.+++-..+++...+.
T Consensus 95 t~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~~Rne~~k~ 147 (268)
T KOG4175|consen 95 TCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAETLRNEARKH 147 (268)
T ss_pred ccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHHHHHHHHHhc
Confidence 6899999864 4566788899999999999999999887777666543
No 125
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=89.92 E-value=1.2 Score=37.29 Aligned_cols=59 Identities=17% Similarity=0.337 Sum_probs=43.2
Q ss_pred CHHHHHHHHHhcCCCCCCcEEEEccCCC------hHHHHHHHHhcccccccCCCCHHHHHHhhHHHHH
Q 026239 91 TGYDLLKKIKESSSLRDIPVVIMSSENV------PSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMK 152 (241)
Q Consensus 91 ~g~~ll~~ir~~~~~~~ipvIils~~~~------~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~~ 152 (241)
.++++++.+|... ++|+++|+-.+. ...+..+.++|+++++.-....+++..++..+.+
T Consensus 63 ~~~~~~~~vr~~~---~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~ 127 (242)
T cd04724 63 DVLELVKEIRKKN---TIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKE 127 (242)
T ss_pred HHHHHHHHHhhcC---CCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHH
Confidence 4677888888653 689998887553 6668889999999998866666776666655543
No 126
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=89.88 E-value=1.7 Score=35.02 Aligned_cols=78 Identities=15% Similarity=0.214 Sum_probs=49.9
Q ss_pred cceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCC--CCCC-
Q 026239 15 QFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCM--PGMT- 91 (241)
Q Consensus 15 ~~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~m--p~~~- 91 (241)
+++||+||....+---|..+|...|+.|+++.+..-.+..+... .+|.|++.=.- |...
T Consensus 1 ~~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~~~------------------~pd~iviSPGPG~P~d~G 62 (191)
T COG0512 1 MMMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIEAL------------------KPDAIVISPGPGTPKDAG 62 (191)
T ss_pred CceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHHhhc------------------CCCEEEEcCCCCChHHcc
Confidence 36899999988888889999999998888766553333334332 35588885321 2211
Q ss_pred -HHHHHHHHHhcCCCCCCcEEEEcc
Q 026239 92 -GYDLLKKIKESSSLRDIPVVIMSS 115 (241)
Q Consensus 92 -g~~ll~~ir~~~~~~~ipvIils~ 115 (241)
..++++++. ..+||+-+.=
T Consensus 63 ~~~~~i~~~~-----~~~PiLGVCL 82 (191)
T COG0512 63 ISLELIRRFA-----GRIPILGVCL 82 (191)
T ss_pred hHHHHHHHhc-----CCCCEEEECc
Confidence 244555442 2689987653
No 127
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=89.79 E-value=4.9 Score=33.82 Aligned_cols=73 Identities=12% Similarity=0.124 Sum_probs=52.3
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhccccccc-CCCCHHHHHHhhHHH
Q 026239 77 GVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFL-KPVRLSDLNKLKPHL 150 (241)
Q Consensus 77 ~~dlIilD~~mp~~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~-KP~~~~~L~~~~~~l 150 (241)
.||.|++|+.-...+.-++...|+..... ...+++=....+...+.++++.|+++++. |--+.+++..++..+
T Consensus 33 g~D~v~iDlEH~~~~~~~~~~~~~a~~~~-g~~~~VRv~~~~~~~i~~~Ld~Ga~gIivP~v~s~e~a~~~v~~~ 106 (249)
T TIGR02311 33 GFDWLLIDGEHAPNDVRTILSQLQALAPY-PSSPVVRPAIGDPVLIKQLLDIGAQTLLVPMIETAEQAEAAVAAT 106 (249)
T ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHhc-CCCcEEECCCCCHHHHHHHhCCCCCEEEecCcCCHHHHHHHHHHc
Confidence 46799999998888888888877764322 23444445556777899999999999864 455777776665544
No 128
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=89.57 E-value=1.2 Score=37.79 Aligned_cols=59 Identities=20% Similarity=0.413 Sum_probs=43.9
Q ss_pred CHHHHHHHHHhcCCCCCCcEEEEccCC------ChHHHHHHHHhcccccccCCCCHHHHHHhhHHHH
Q 026239 91 TGYDLLKKIKESSSLRDIPVVIMSSEN------VPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLM 151 (241)
Q Consensus 91 ~g~~ll~~ir~~~~~~~ipvIils~~~------~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~ 151 (241)
+.+++++++|+... ++|+|+||-.+ .......|.++|++++|.-.+.+++...++..+.
T Consensus 75 ~~~~~~~~~r~~~~--~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~ 139 (258)
T PRK13111 75 DVFELVREIREKDP--TIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAK 139 (258)
T ss_pred HHHHHHHHHHhcCC--CCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHH
Confidence 45778888885433 78999998553 3456888999999999997788877766665554
No 129
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=89.46 E-value=10 Score=32.17 Aligned_cols=88 Identities=16% Similarity=0.143 Sum_probs=55.0
Q ss_pred HHHHHHHHhhcCCCEEE-EECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeC-CC--CCCCHHHHHHHHHhc
Q 026239 27 DRKLIERLLKTSSYQVT-TVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDY-CM--PGMTGYDLLKKIKES 102 (241)
Q Consensus 27 ~~~~l~~~L~~~g~~v~-~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~-~m--p~~~g~~ll~~ir~~ 102 (241)
....+....+..|..+. .+.+.+++...... . +|+|-+.- ++ ...+ ++.+.++...
T Consensus 148 ~l~~li~~a~~lGl~~lvevh~~~E~~~A~~~-g------------------adiIgin~rdl~~~~~d-~~~~~~l~~~ 207 (260)
T PRK00278 148 QLKELLDYAHSLGLDVLVEVHDEEELERALKL-G------------------APLIGINNRNLKTFEVD-LETTERLAPL 207 (260)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHc-C------------------CCEEEECCCCcccccCC-HHHHHHHHHh
Confidence 33334444456787754 67888887665532 2 34554431 11 1122 5666666654
Q ss_pred CCCCCCcEEEEccCCChHHHHHHHHhccccccc
Q 026239 103 SSLRDIPVVIMSSENVPSRISRCLEEGAEEFFL 135 (241)
Q Consensus 103 ~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~ 135 (241)
.+ ...++|..++-.+++.+..+++.|+++++.
T Consensus 208 ~p-~~~~vIaegGI~t~ed~~~~~~~Gad~vlV 239 (260)
T PRK00278 208 IP-SDRLVVSESGIFTPEDLKRLAKAGADAVLV 239 (260)
T ss_pred CC-CCCEEEEEeCCCCHHHHHHHHHcCCCEEEE
Confidence 32 246889999998999999999999999754
No 130
>PLN02591 tryptophan synthase
Probab=89.25 E-value=1.2 Score=37.61 Aligned_cols=58 Identities=16% Similarity=0.275 Sum_probs=44.1
Q ss_pred CHHHHHHHHHhcCCCCCCcEEEEccCCC------hHHHHHHHHhcccccccCCCCHHHHHHhhHHHH
Q 026239 91 TGYDLLKKIKESSSLRDIPVVIMSSENV------PSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLM 151 (241)
Q Consensus 91 ~g~~ll~~ir~~~~~~~ipvIils~~~~------~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~ 151 (241)
+.+++++++|.. .++|+|+||-.+. .....+|.++|++++|.-.+..++...++..+.
T Consensus 65 ~~~~~~~~~r~~---~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~ 128 (250)
T PLN02591 65 SVISMLKEVAPQ---LSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAA 128 (250)
T ss_pred HHHHHHHHHhcC---CCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Confidence 467888888853 2789999987553 445778899999999998888888776665554
No 131
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=89.20 E-value=10 Score=34.17 Aligned_cols=67 Identities=15% Similarity=0.074 Sum_probs=36.1
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHHH
Q 026239 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMK 152 (241)
Q Consensus 79 dlIilD~~mp~~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~~ 152 (241)
|++++--.....-|..+++.+.. .+|||+.....+...+...+. ..+++..|-+.++|...+..++.
T Consensus 321 Di~~v~~S~~e~~g~~~lEAma~-----G~PVI~g~~~~~~~e~~~~~~--~~g~~~~~~d~~~La~~l~~ll~ 387 (425)
T PRK05749 321 DIAFVGGSLVKRGGHNPLEPAAF-----GVPVISGPHTFNFKEIFERLL--QAGAAIQVEDAEDLAKAVTYLLT 387 (425)
T ss_pred CEEEECCCcCCCCCCCHHHHHHh-----CCCEEECCCccCHHHHHHHHH--HCCCeEEECCHHHHHHHHHHHhc
Confidence 57665333322235455555543 678886322222333333322 23567778888999877776654
No 132
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=89.10 E-value=1.9 Score=35.82 Aligned_cols=53 Identities=21% Similarity=0.332 Sum_probs=43.4
Q ss_pred EEEEeCCCCCC-C--HHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhccccccc
Q 026239 80 LVITDYCMPGM-T--GYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFL 135 (241)
Q Consensus 80 lIilD~~mp~~-~--g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~ 135 (241)
++++|+..-++ . .+++++.+.+.. .+||++-.+-.+.+.+..+++.|+++.+.
T Consensus 162 li~~di~~~G~~~g~~~~~~~~i~~~~---~ipvi~~GGi~s~edi~~l~~~G~~~viv 217 (233)
T cd04723 162 LIVLDIDRVGSGQGPDLELLERLAARA---DIPVIAAGGVRSVEDLELLKKLGASGALV 217 (233)
T ss_pred EEEEEcCccccCCCcCHHHHHHHHHhc---CCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 99999987653 2 367788888753 78999999899999999999999998765
No 133
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=88.77 E-value=3.5 Score=33.03 Aligned_cols=69 Identities=13% Similarity=0.104 Sum_probs=49.3
Q ss_pred EECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHH
Q 026239 44 TVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRIS 123 (241)
Q Consensus 44 ~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~ 123 (241)
-+.+.+++...+. ..+|.|-++- .+. .|.++++.++... +++|++...+- +.+.+.
T Consensus 103 gv~t~~e~~~A~~-------------------~Gad~i~~~p-~~~-~g~~~~~~l~~~~--~~~p~~a~GGI-~~~n~~ 158 (190)
T cd00452 103 GVATPTEIMQALE-------------------LGADIVKLFP-AEA-VGPAYIKALKGPF--PQVRFMPTGGV-SLDNAA 158 (190)
T ss_pred CcCCHHHHHHHHH-------------------CCCCEEEEcC-Ccc-cCHHHHHHHHhhC--CCCeEEEeCCC-CHHHHH
Confidence 5668888877763 2355777743 333 3899999998754 36888877665 788899
Q ss_pred HHHHhcccccccC
Q 026239 124 RCLEEGAEEFFLK 136 (241)
Q Consensus 124 ~~l~~Ga~~~l~K 136 (241)
.+++.|++.+..-
T Consensus 159 ~~~~~G~~~v~v~ 171 (190)
T cd00452 159 EWLAAGVVAVGGG 171 (190)
T ss_pred HHHHCCCEEEEEc
Confidence 9999998877543
No 134
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=88.66 E-value=5.6 Score=31.34 Aligned_cols=55 Identities=29% Similarity=0.459 Sum_probs=40.6
Q ss_pred cccEEEEeCCCCC--------CCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhccccccc
Q 026239 77 GVNLVITDYCMPG--------MTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFL 135 (241)
Q Consensus 77 ~~dlIilD~~mp~--------~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~ 135 (241)
.+|.|+++...|+ ..|++.++++++. .++||++..+- ..+.+..++..|++++..
T Consensus 115 g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~pv~a~GGi-~~~~i~~~~~~Ga~~i~~ 177 (196)
T cd00564 115 GADYVGFGPVFPTPTKPGAGPPLGLELLREIAEL---VEIPVVAIGGI-TPENAAEVLAAGADGVAV 177 (196)
T ss_pred CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh---CCCCEEEECCC-CHHHHHHHHHcCCCEEEE
Confidence 3678888755442 3467888888875 26899988776 467888999999988744
No 135
>PRK12704 phosphodiesterase; Provisional
Probab=88.44 E-value=1.8 Score=40.45 Aligned_cols=43 Identities=16% Similarity=0.163 Sum_probs=34.0
Q ss_pred cEEEEccCCChH--HHHHHHHhcccccccCCCCHHHHHHhhHHHH
Q 026239 109 PVVIMSSENVPS--RISRCLEEGAEEFFLKPVRLSDLNKLKPHLM 151 (241)
Q Consensus 109 pvIils~~~~~~--~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~ 151 (241)
.+|++|+.+... ....+++.|+.|+..||++.+++......-+
T Consensus 251 ~~v~ls~~~~~rre~a~~~l~~l~~dg~i~P~~iee~~~~~~~~~ 295 (520)
T PRK12704 251 EAVILSGFDPIRREIARLALEKLVQDGRIHPARIEEMVEKARKEV 295 (520)
T ss_pred CeEEEecCChhhHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHH
Confidence 578889877655 7788999999999999999999865443333
No 136
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=88.39 E-value=6.2 Score=32.46 Aligned_cols=53 Identities=15% Similarity=0.313 Sum_probs=41.5
Q ss_pred EEEEeCCCCCC-C--HHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhccccccc
Q 026239 80 LVITDYCMPGM-T--GYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFL 135 (241)
Q Consensus 80 lIilD~~mp~~-~--g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~ 135 (241)
++++|+.--++ . .+++++.+++.. ++||++-.+-.+.+.+..+++.||++++.
T Consensus 162 ii~~~~~~~g~~~g~~~~~i~~i~~~~---~ipvia~GGi~~~~di~~~~~~Gadgv~i 217 (230)
T TIGR00007 162 IIYTDISRDGTLSGPNFELTKELVKAV---NVPVIASGGVSSIDDLIALKKLGVYGVIV 217 (230)
T ss_pred EEEEeecCCCCcCCCCHHHHHHHHHhC---CCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 77788765432 1 268888888752 78999988888999999999999998865
No 137
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=88.15 E-value=7.2 Score=36.28 Aligned_cols=107 Identities=20% Similarity=0.170 Sum_probs=64.4
Q ss_pred CHHHHHHHHHHhhcCC-CEEEEEC------CHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCC-CHHHH
Q 026239 24 SIIDRKLIERLLKTSS-YQVTTVD------SGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGM-TGYDL 95 (241)
Q Consensus 24 ~~~~~~~l~~~L~~~g-~~v~~~~------~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~-~g~~l 95 (241)
.|.-...|...|+..| ++|..++ +.++..+.+... .||+|.+....+.. ...++
T Consensus 21 pPlgl~~lAa~L~~~G~~~V~iiD~~~~~~~~~~~~~~l~~~------------------~pdvVgis~~t~~~~~a~~~ 82 (497)
T TIGR02026 21 PPLWVAYIGGALLDAGYHDVTFLDAMTGPLTDEKLVERLRAH------------------CPDLVLITAITPAIYIACET 82 (497)
T ss_pred CCHHHHHHHHHHHhcCCcceEEecccccCCCHHHHHHHHHhc------------------CcCEEEEecCcccHHHHHHH
Confidence 3556677888898889 6887764 223344445433 35598887655543 35678
Q ss_pred HHHHHhcCCCCCCcEEEEccCCChHHHHHHHH-hcccccccCCCCHHHHHHhhHHHH
Q 026239 96 LKKIKESSSLRDIPVVIMSSENVPSRISRCLE-EGAEEFFLKPVRLSDLNKLKPHLM 151 (241)
Q Consensus 96 l~~ir~~~~~~~ipvIils~~~~~~~~~~~l~-~Ga~~~l~KP~~~~~L~~~~~~l~ 151 (241)
++.+|+..+ +++||+=..+. .....+++. ....||+..--....+..++..+.
T Consensus 83 ~~~~k~~~P--~~~iV~GG~h~-t~~~~~~l~~~p~vD~Vv~GEGE~~~~~Ll~~l~ 136 (497)
T TIGR02026 83 LKFARERLP--NAIIVLGGIHP-TFMFHQVLTEAPWIDFIVRGEGEETVVKLIAALE 136 (497)
T ss_pred HHHHHHHCC--CCEEEEcCCCc-CcCHHHHHhcCCCccEEEeCCcHHHHHHHHHHHH
Confidence 888888754 66666543333 223344554 344577777655555666666553
No 138
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=88.14 E-value=6.1 Score=29.22 Aligned_cols=103 Identities=18% Similarity=0.168 Sum_probs=58.9
Q ss_pred HHHHHHHhhcCCCEEEEEC--CHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCC-CHHHHHHHHHhcCC
Q 026239 28 RKLIERLLKTSSYQVTTVD--SGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGM-TGYDLLKKIKESSS 104 (241)
Q Consensus 28 ~~~l~~~L~~~g~~v~~~~--~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~-~g~~ll~~ir~~~~ 104 (241)
...+..+|...|+.+...+ ..+..++.+.. ...||+|.+....... ....+++.+|+..+
T Consensus 5 l~~~aa~l~~~g~~v~~~~~~~~~~~~~~~~~-----------------~~~pdiv~~S~~~~~~~~~~~~~~~ik~~~p 67 (127)
T cd02068 5 LAYLAAVLEDAGFIVAEHDVLSADDIVEDIKE-----------------LLKPDVVGISLMTSAIYEALELAKIAKEVLP 67 (127)
T ss_pred HHHHHHHHHHCCCeeeecCCCCHHHHHHHHHH-----------------hcCCCEEEEeeccccHHHHHHHHHHHHHHCC
Confidence 4567778888888776543 44555565543 1345699988754443 46778999998764
Q ss_pred CCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHH
Q 026239 105 LRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHL 150 (241)
Q Consensus 105 ~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l 150 (241)
+++||+-..... .....++.....||+..---...+..++.++
T Consensus 68 --~~~iv~GG~~~t-~~p~~~~~~~~~D~vv~GEgE~~~~~l~~~l 110 (127)
T cd02068 68 --NVIVVVGGPHAT-FFPEEILEEPGVDFVVIGEGEETFLKLLEEL 110 (127)
T ss_pred --CCEEEECCcchh-hCHHHHhcCCCCCEEEECCcHHHHHHHHHHH
Confidence 666665443322 2222223333446777654334445555443
No 139
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=88.09 E-value=4.3 Score=33.16 Aligned_cols=71 Identities=8% Similarity=0.066 Sum_probs=49.2
Q ss_pred CcceEEEEeCCHHHHHHHHHHhhcCCC--EEE-EECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCC
Q 026239 14 SQFHVLAVDDSIIDRKLIERLLKTSSY--QVT-TVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGM 90 (241)
Q Consensus 14 ~~~~ILiVdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~ 90 (241)
+.-+|.-||-++......+..++..|+ .|. ...++.+.+..+.... ....||+||+|..= .
T Consensus 69 ~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~--------------~~~~fD~VFiDa~K--~ 132 (205)
T PF01596_consen 69 EDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDG--------------EEGQFDFVFIDADK--R 132 (205)
T ss_dssp TTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTT--------------TTTSEEEEEEESTG--G
T ss_pred ccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhcc--------------CCCceeEEEEcccc--c
Confidence 357999999999999999999998886 455 5577778777664321 12469999999853 2
Q ss_pred CHHHHHHHHH
Q 026239 91 TGYDLLKKIK 100 (241)
Q Consensus 91 ~g~~ll~~ir 100 (241)
+-.+.++.+.
T Consensus 133 ~y~~y~~~~~ 142 (205)
T PF01596_consen 133 NYLEYFEKAL 142 (205)
T ss_dssp GHHHHHHHHH
T ss_pred chhhHHHHHh
Confidence 3444444443
No 140
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=88.08 E-value=7.1 Score=32.66 Aligned_cols=55 Identities=13% Similarity=0.173 Sum_probs=36.4
Q ss_pred EEEEeCCCCCC------CHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCC
Q 026239 80 LVITDYCMPGM------TGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137 (241)
Q Consensus 80 lIilD~~mp~~------~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP 137 (241)
++++ -..|+. +-.+.++++|+... +.||++=.+-.+.+.+..++++|||+++.-.
T Consensus 155 ~l~m-sv~~~~g~~~~~~~~~~i~~lr~~~~--~~~i~v~gGI~~~e~i~~~~~~gaD~vvvGS 215 (244)
T PRK13125 155 FIYY-GLRPATGVPLPVSVERNIKRVRNLVG--NKYLVVGFGLDSPEDARDALSAGADGVVVGT 215 (244)
T ss_pred EEEE-EeCCCCCCCchHHHHHHHHHHHHhcC--CCCEEEeCCcCCHHHHHHHHHcCCCEEEECH
Confidence 6666 445542 22456777776543 4676654444478888888999999998764
No 141
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=88.00 E-value=0.85 Score=36.11 Aligned_cols=68 Identities=16% Similarity=0.215 Sum_probs=46.9
Q ss_pred EEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEccCCChHHH
Q 026239 43 TTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRI 122 (241)
Q Consensus 43 ~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~ 122 (241)
+.+++.+++.+++.. .+|+|.+|-.-| .+--++++.++...+ . ..|.+|+.-+.+.+
T Consensus 85 VEv~~~ee~~ea~~~-------------------g~d~I~lD~~~~-~~~~~~v~~l~~~~~--~-v~ie~SGGI~~~ni 141 (169)
T PF01729_consen 85 VEVENLEEAEEALEA-------------------GADIIMLDNMSP-EDLKEAVEELRELNP--R-VKIEASGGITLENI 141 (169)
T ss_dssp EEESSHHHHHHHHHT-------------------T-SEEEEES-CH-HHHHHHHHHHHHHTT--T-SEEEEESSSSTTTH
T ss_pred EEcCCHHHHHHHHHh-------------------CCCEEEecCcCH-HHHHHHHHHHhhcCC--c-EEEEEECCCCHHHH
Confidence 378899999998853 367999996544 233345555555543 3 67778888888999
Q ss_pred HHHHHhccccc
Q 026239 123 SRCLEEGAEEF 133 (241)
Q Consensus 123 ~~~l~~Ga~~~ 133 (241)
.+..+.|+|.+
T Consensus 142 ~~ya~~gvD~i 152 (169)
T PF01729_consen 142 AEYAKTGVDVI 152 (169)
T ss_dssp HHHHHTT-SEE
T ss_pred HHHHhcCCCEE
Confidence 99999998765
No 142
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=87.90 E-value=5.8 Score=34.71 Aligned_cols=51 Identities=14% Similarity=0.240 Sum_probs=39.5
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhccccccc-----CCCCHHHHHH
Q 026239 92 GYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFL-----KPVRLSDLNK 145 (241)
Q Consensus 92 g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~-----KP~~~~~L~~ 145 (241)
.-+.++.+.+.. ++|||+=.+-..++.+..+++.|+++.+. |--++-.+.+
T Consensus 237 ~p~~i~~~~e~~---~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa~a~dPv~Ma~ 292 (326)
T PRK11840 237 NPYTIRLIVEGA---TVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIAEAKNPVLMAR 292 (326)
T ss_pred CHHHHHHHHHcC---CCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceeccCCCHHHHHH
Confidence 356777777753 79999999999999999999999999865 4445555544
No 143
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=87.59 E-value=5.8 Score=33.95 Aligned_cols=42 Identities=24% Similarity=0.472 Sum_probs=34.1
Q ss_pred CHHHHHHHHHhcCCCCCCcEE--EEccCCChHHHHHHHHhccccccc
Q 026239 91 TGYDLLKKIKESSSLRDIPVV--IMSSENVPSRISRCLEEGAEEFFL 135 (241)
Q Consensus 91 ~g~~ll~~ir~~~~~~~ipvI--ils~~~~~~~~~~~l~~Ga~~~l~ 135 (241)
.|+++++.+++.. .+||| ...+-..++.+..+++.||++++.
T Consensus 181 ~d~elLk~l~~~~---~iPVV~iAeGGI~Tpena~~v~e~GAdgVaV 224 (283)
T cd04727 181 APYELVKETAKLG---RLPVVNFAAGGVATPADAALMMQLGADGVFV 224 (283)
T ss_pred CCHHHHHHHHHhc---CCCeEEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 4788999998854 58997 556666899999999999998854
No 144
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=87.38 E-value=6.3 Score=31.22 Aligned_cols=80 Identities=26% Similarity=0.324 Sum_probs=50.8
Q ss_pred HHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCC-------CHHHHHHHHHhcCC
Q 026239 32 ERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGM-------TGYDLLKKIKESSS 104 (241)
Q Consensus 32 ~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~-------~g~~ll~~ir~~~~ 104 (241)
+..+....+--..+.+.+++.+... ..+|.|++.-..|.. -|++.+++++...
T Consensus 89 r~~~~~~~~ig~S~h~~~e~~~a~~-------------------~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~- 148 (180)
T PF02581_consen 89 RKLLGPDKIIGASCHSLEEAREAEE-------------------LGADYVFLGPVFPTSSKPGAPPLGLDGLREIARAS- 148 (180)
T ss_dssp HHHHTTTSEEEEEESSHHHHHHHHH-------------------CTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHT-
T ss_pred hhhcccceEEEeecCcHHHHHHhhh-------------------cCCCEEEECCccCCCCCccccccCHHHHHHHHHhC-
Confidence 3444333332336777777655542 235688887765543 3899999998765
Q ss_pred CCCCcEEEEccCCChHHHHHHHHhcccccc
Q 026239 105 LRDIPVVIMSSENVPSRISRCLEEGAEEFF 134 (241)
Q Consensus 105 ~~~ipvIils~~~~~~~~~~~l~~Ga~~~l 134 (241)
.+||+.+.+- +++.+..+.+.|++++-
T Consensus 149 --~~pv~AlGGI-~~~~i~~l~~~Ga~gvA 175 (180)
T PF02581_consen 149 --PIPVYALGGI-TPENIPELREAGADGVA 175 (180)
T ss_dssp --SSCEEEESS---TTTHHHHHHTT-SEEE
T ss_pred --CCCEEEEcCC-CHHHHHHHHHcCCCEEE
Confidence 5899999876 45667788999998863
No 145
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=87.33 E-value=7.9 Score=31.79 Aligned_cols=90 Identities=13% Similarity=0.275 Sum_probs=49.6
Q ss_pred HHhhcCCC-EEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEE
Q 026239 33 RLLKTSSY-QVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVV 111 (241)
Q Consensus 33 ~~L~~~g~-~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~~ll~~ir~~~~~~~ipvI 111 (241)
..|...+. -|....+.++++..++... +..+++| .+.+-.-++++.++.+++..+ ++ +|
T Consensus 10 ~~l~~~~~iaV~r~~~~~~a~~i~~al~---------------~~Gi~~i--Eitl~~~~~~~~I~~l~~~~p--~~-~I 69 (212)
T PRK05718 10 EILRAGPVVPVIVINKLEDAVPLAKALV---------------AGGLPVL--EVTLRTPAALEAIRLIAKEVP--EA-LI 69 (212)
T ss_pred HHHHHCCEEEEEEcCCHHHHHHHHHHHH---------------HcCCCEE--EEecCCccHHHHHHHHHHHCC--CC-EE
Confidence 34444443 3445667777776664321 1123333 333444478888888887543 42 23
Q ss_pred EEccCCChHHHHHHHHhcccccccCCCCHHHH
Q 026239 112 IMSSENVPSRISRCLEEGAEEFFLKPVRLSDL 143 (241)
Q Consensus 112 ils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L 143 (241)
-...-.+.+....++++||+ |+.-|.-..++
T Consensus 70 GAGTVl~~~~a~~a~~aGA~-FivsP~~~~~v 100 (212)
T PRK05718 70 GAGTVLNPEQLAQAIEAGAQ-FIVSPGLTPPL 100 (212)
T ss_pred EEeeccCHHHHHHHHHcCCC-EEECCCCCHHH
Confidence 23334456777888888884 66666433344
No 146
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=87.11 E-value=12 Score=30.66 Aligned_cols=56 Identities=18% Similarity=0.351 Sum_probs=40.4
Q ss_pred ccEEEEeCCCCC-------CCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccC
Q 026239 78 VNLVITDYCMPG-------MTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLK 136 (241)
Q Consensus 78 ~dlIilD~~mp~-------~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~K 136 (241)
+|.|+++-.-++ ...+++++++++.. ++||++..+-...+.+.+++..|++++..-
T Consensus 123 ad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~---~~Pvi~~GGI~~~~~v~~~l~~GadgV~vg 185 (236)
T cd04730 123 ADALVAQGAEAGGHRGTFDIGTFALVPEVRDAV---DIPVIAAGGIADGRGIAAALALGADGVQMG 185 (236)
T ss_pred CCEEEEeCcCCCCCCCccccCHHHHHHHHHHHh---CCCEEEECCCCCHHHHHHHHHcCCcEEEEc
Confidence 457776542211 24577899888643 689998888777788999999999987654
No 147
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=86.39 E-value=2.2 Score=36.31 Aligned_cols=58 Identities=14% Similarity=0.229 Sum_probs=43.9
Q ss_pred CHHHHHHHHHhcCCCCCCcEEEEccCC------ChHHHHHHHHhcccccccCCCCHHHHHHhhHHHH
Q 026239 91 TGYDLLKKIKESSSLRDIPVVIMSSEN------VPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLM 151 (241)
Q Consensus 91 ~g~~ll~~ir~~~~~~~ipvIils~~~------~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~ 151 (241)
+.+++++++|.. .++|+|+||-.+ ....+.+|.++|+++++.-....++...+...+.
T Consensus 78 ~~~~~~~~~r~~---~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~ 141 (263)
T CHL00200 78 KILSILSEVNGE---IKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCN 141 (263)
T ss_pred HHHHHHHHHhcC---CCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHH
Confidence 457888888853 378999998764 3556888999999999998888777766655553
No 148
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=86.37 E-value=1.4 Score=35.30 Aligned_cols=31 Identities=10% Similarity=-0.020 Sum_probs=27.0
Q ss_pred EEEEeCCHHHHHHHHHHhhcCCCEEEEECCH
Q 026239 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSG 48 (241)
Q Consensus 18 ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~ 48 (241)
||+||....+-..|..+|+..|+.|.++.+.
T Consensus 2 il~id~~dsf~~nl~~~l~~~~~~~~v~~~~ 32 (191)
T PRK06774 2 LLLIDNYDSFTYNLYQYFCELGTEVMVKRND 32 (191)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEeCC
Confidence 8999999989899999999999988877654
No 149
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=86.36 E-value=12 Score=34.74 Aligned_cols=104 Identities=20% Similarity=0.274 Sum_probs=60.8
Q ss_pred hcCcceEEEEeCC----HHHHHHHHHHhhcC-CCEEE--EECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEe
Q 026239 12 AESQFHVLAVDDS----IIDRKLIERLLKTS-SYQVT--TVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITD 84 (241)
Q Consensus 12 ~~~~~~ILiVdd~----~~~~~~l~~~L~~~-g~~v~--~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD 84 (241)
.+....++++|.. ......+..+-... +..|. .+.+.++|..+... .+|.|.+.
T Consensus 237 ~~agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~a-------------------Gad~i~vg 297 (486)
T PRK05567 237 VEAGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEA-------------------GADAVKVG 297 (486)
T ss_pred HHhCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHc-------------------CCCEEEEC
Confidence 3456778888853 12333344333333 33322 45677777776642 34566553
Q ss_pred CCCCC------------CCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhccccccc
Q 026239 85 YCMPG------------MTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFL 135 (241)
Q Consensus 85 ~~mp~------------~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~ 135 (241)
+. |+ ..-++++..+........+|||.=.+-..+..+..|+.+||+.++.
T Consensus 298 ~g-~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~GA~~v~~ 359 (486)
T PRK05567 298 IG-PGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAVML 359 (486)
T ss_pred CC-CCccccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhCCCEEEE
Confidence 31 21 1234566555543222368998888888999999999999987643
No 150
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=86.13 E-value=7.7 Score=37.02 Aligned_cols=117 Identities=10% Similarity=0.121 Sum_probs=61.5
Q ss_pred ceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCc---ccccccEEEEeCCCCCCCH
Q 026239 16 FHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMH---QEVGVNLVITDYCMPGMTG 92 (241)
Q Consensus 16 ~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~---~~~~~dlIilD~~mp~~~g 92 (241)
.||+|+.-...-+. +.+.|...|+.++..+...+.++.++.....-..+....+... .-.+.+++|+-..-+ .+.
T Consensus 401 ~~vII~G~Gr~G~~-va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~-~~n 478 (601)
T PRK03659 401 PQVIIVGFGRFGQV-IGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEP-EDT 478 (601)
T ss_pred CCEEEecCchHHHH-HHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCH-HHH
Confidence 45666665555443 3444555566666655555555544321100000111111000 112345666644332 345
Q ss_pred HHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCC
Q 026239 93 YDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPV 138 (241)
Q Consensus 93 ~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~ 138 (241)
..++..+|+..+ +++||+-+. ++.......+.||+.++.--+
T Consensus 479 ~~i~~~~r~~~p--~~~IiaRa~--~~~~~~~L~~~Ga~~vv~e~~ 520 (601)
T PRK03659 479 MKIVELCQQHFP--HLHILARAR--GRVEAHELLQAGVTQFSRETF 520 (601)
T ss_pred HHHHHHHHHHCC--CCeEEEEeC--CHHHHHHHHhCCCCEEEccHH
Confidence 667778887654 778876554 456677888999998775544
No 151
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=85.80 E-value=20 Score=31.57 Aligned_cols=97 Identities=14% Similarity=0.150 Sum_probs=60.8
Q ss_pred eEEEEeC----CHHHHHHHHHHhhcCC-CEEE--EECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCC-
Q 026239 17 HVLAVDD----SIIDRKLIERLLKTSS-YQVT--TVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMP- 88 (241)
Q Consensus 17 ~ILiVdd----~~~~~~~l~~~L~~~g-~~v~--~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp- 88 (241)
.+++||- .....+.+..+-+.++ ..|. .+.+.++|..+.. ..+|+|.+.+.-.
T Consensus 113 d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~-------------------aGad~i~vg~~~G~ 173 (326)
T PRK05458 113 EYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELEN-------------------AGADATKVGIGPGK 173 (326)
T ss_pred CEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHH-------------------cCcCEEEECCCCCc
Confidence 6777763 2333344444434443 3333 3678888877663 2355766442111
Q ss_pred ----------CCC--HHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhccccccc
Q 026239 89 ----------GMT--GYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFL 135 (241)
Q Consensus 89 ----------~~~--g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~ 135 (241)
+.. ++..+..+++.. ++|||.-.+-.....+.+|+.+||+.+..
T Consensus 174 ~~~t~~~~g~~~~~w~l~ai~~~~~~~---~ipVIAdGGI~~~~Di~KaLa~GA~aV~v 229 (326)
T PRK05458 174 VCITKIKTGFGTGGWQLAALRWCAKAA---RKPIIADGGIRTHGDIAKSIRFGATMVMI 229 (326)
T ss_pred ccccccccCCCCCccHHHHHHHHHHHc---CCCEEEeCCCCCHHHHHHHHHhCCCEEEe
Confidence 112 455688887643 68999998888999999999999987643
No 152
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=85.52 E-value=4.3 Score=35.04 Aligned_cols=93 Identities=16% Similarity=0.212 Sum_probs=54.3
Q ss_pred EEEEeCCHHHHHHHHHHh----hcCC--CEEE-EECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCC
Q 026239 18 VLAVDDSIIDRKLIERLL----KTSS--YQVT-TVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGM 90 (241)
Q Consensus 18 ILiVdd~~~~~~~l~~~L----~~~g--~~v~-~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~ 90 (241)
|||-|.+....-.+...+ +..+ ..+. .+++.+++.+++. ..+|+|.+| .|...
T Consensus 169 ilikdNHi~~~g~i~~av~~~r~~~~~~~~I~VEv~tleea~eA~~-------------------~GaD~I~LD-n~~~e 228 (288)
T PRK07428 169 VMIKDNHIQAAGGIGEAITRIRQRIPYPLTIEVETETLEQVQEALE-------------------YGADIIMLD-NMPVD 228 (288)
T ss_pred eeecHHHHHHhCCHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHH-------------------cCCCEEEEC-CCCHH
Confidence 666666544332233333 2334 2343 6789999999884 235699999 33222
Q ss_pred CHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhccccc
Q 026239 91 TGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEF 133 (241)
Q Consensus 91 ~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~ 133 (241)
+--++++.++... +++| +..++.-+.+.+......|+|.+
T Consensus 229 ~l~~av~~~~~~~--~~i~-leAsGGIt~~ni~~ya~tGvD~I 268 (288)
T PRK07428 229 LMQQAVQLIRQQN--PRVK-IEASGNITLETIRAVAETGVDYI 268 (288)
T ss_pred HHHHHHHHHHhcC--CCeE-EEEECCCCHHHHHHHHHcCCCEE
Confidence 2222344444322 2555 44566677888889999999765
No 153
>PLN02591 tryptophan synthase
Probab=85.27 E-value=20 Score=30.20 Aligned_cols=101 Identities=12% Similarity=0.173 Sum_probs=62.5
Q ss_pred eEEEEeCCHHHHHHHHHHhhcCCCEEE-EE-C-CHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeC-CCCC---
Q 026239 17 HVLAVDDSIIDRKLIERLLKTSSYQVT-TV-D-SGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDY-CMPG--- 89 (241)
Q Consensus 17 ~ILiVdd~~~~~~~l~~~L~~~g~~v~-~~-~-~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~-~mp~--- 89 (241)
-|+|.|-...-...+...++..|.... .+ . +..+-+..+....++ | +-++.. ...|
T Consensus 109 GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~g----------------F-IY~Vs~~GvTG~~~ 171 (250)
T PLN02591 109 GLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEG----------------F-VYLVSSTGVTGARA 171 (250)
T ss_pred EEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCC----------------c-EEEeeCCCCcCCCc
Confidence 456666665556667777777887554 33 2 334445555443332 0 222221 1111
Q ss_pred ---CCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCC
Q 026239 90 ---MTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137 (241)
Q Consensus 90 ---~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP 137 (241)
.+-.++++++|+. .++||++=.+-.+.+.+..+++.|||+++.-.
T Consensus 172 ~~~~~~~~~i~~vk~~---~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGS 219 (250)
T PLN02591 172 SVSGRVESLLQELKEV---TDKPVAVGFGISKPEHAKQIAGWGADGVIVGS 219 (250)
T ss_pred CCchhHHHHHHHHHhc---CCCceEEeCCCCCHHHHHHHHhcCCCEEEECH
Confidence 1234568888874 38999987777788999999999999998865
No 154
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=85.16 E-value=4.6 Score=33.63 Aligned_cols=54 Identities=19% Similarity=0.357 Sum_probs=44.0
Q ss_pred cEEEEeCCCCCC-CH--HHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhccccccc
Q 026239 79 NLVITDYCMPGM-TG--YDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFL 135 (241)
Q Consensus 79 dlIilD~~mp~~-~g--~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~ 135 (241)
.+|++|+..-|+ .| +++++.+.+.. ++||++-.+-.+.+.+..+++.|+++.+.
T Consensus 164 ~ii~tdi~~dGt~~G~~~~li~~l~~~~---~ipvi~~GGi~s~edi~~l~~~G~~~viv 220 (234)
T PRK13587 164 GIIYTDIAKDGKMSGPNFELTGQLVKAT---TIPVIASGGIRHQQDIQRLASLNVHAAII 220 (234)
T ss_pred EEEEecccCcCCCCccCHHHHHHHHHhC---CCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 399999987653 33 67788888753 78999998888999999999999998875
No 155
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=84.97 E-value=2.9 Score=35.80 Aligned_cols=52 Identities=23% Similarity=0.372 Sum_probs=39.8
Q ss_pred CHHHHHHHHHhcCCCCCCcEE--EEccCCChHHHHHHHHhcccccc-----cCCCCHHHHHH
Q 026239 91 TGYDLLKKIKESSSLRDIPVV--IMSSENVPSRISRCLEEGAEEFF-----LKPVRLSDLNK 145 (241)
Q Consensus 91 ~g~~ll~~ir~~~~~~~ipvI--ils~~~~~~~~~~~l~~Ga~~~l-----~KP~~~~~L~~ 145 (241)
.|+++++.+++.. .+||| ...+-.+++.+..++++||++++ .|.-++....+
T Consensus 184 ~~~elLkei~~~~---~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~ak 242 (287)
T TIGR00343 184 VPVELLLEVLKLG---KLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKLAK 242 (287)
T ss_pred CCHHHHHHHHHhC---CCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHHHH
Confidence 5889999999854 68998 55666689999999999999984 45445655543
No 156
>PLN02775 Probable dihydrodipicolinate reductase
Probab=84.87 E-value=24 Score=30.38 Aligned_cols=106 Identities=15% Similarity=0.155 Sum_probs=60.8
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhcCCCEEEEE-C-----------------------CHHHHHHHhcccCCCCCCCCCC
Q 026239 13 ESQFHVLAVDDSIIDRKLIERLLKTSSYQVTTV-D-----------------------SGSKALEFLGLHEDDGQSSHSV 68 (241)
Q Consensus 13 ~~~~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~-~-----------------------~~~~al~~l~~~~~d~~~~~~~ 68 (241)
.+.++|+|..-...+-..+.+.+...++.++-+ + +..++|..+.
T Consensus 9 ~~~i~V~V~Ga~G~MG~~~~~av~~~~~~Lv~~~~~~~~~~~~~~~~~g~~v~~~~~~dl~~~l~~~~------------ 76 (286)
T PLN02775 9 GSAIPIMVNGCTGKMGHAVAEAAVSAGLQLVPVSFTGPAGVGVTVEVCGVEVRLVGPSEREAVLSSVK------------ 76 (286)
T ss_pred CCCCeEEEECCCChHHHHHHHHHhcCCCEEEEEeccccccccccceeccceeeeecCccHHHHHHHhh------------
Confidence 445889988877777666666555477766532 2 2222222211
Q ss_pred CCCCcccccccEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHh-cccccccCCCCHH
Q 026239 69 YPNMHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEE-GAEEFFLKPVRLS 141 (241)
Q Consensus 69 ~~~~~~~~~~dlIilD~~mp~~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~-Ga~~~l~KP~~~~ 141 (241)
...+|+|++|+..|.. .++.++..... .+|+|+-|...+.+......+. ++--++.-.|+..
T Consensus 77 ------~~~~~~VvIDFT~P~a-~~~~~~~~~~~----g~~~VvGTTG~~~e~l~~~~~~~~i~vv~apNfSiG 139 (286)
T PLN02775 77 ------AEYPNLIVVDYTLPDA-VNDNAELYCKN----GLPFVMGTTGGDRDRLLKDVEESGVYAVIAPQMGKQ 139 (286)
T ss_pred ------ccCCCEEEEECCChHH-HHHHHHHHHHC----CCCEEEECCCCCHHHHHHHHhcCCccEEEECcccHH
Confidence 1136799999999874 34555555543 5678877776666655444443 3333444446544
No 157
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=84.67 E-value=17 Score=34.05 Aligned_cols=43 Identities=19% Similarity=0.265 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhccccccc
Q 026239 90 MTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFL 135 (241)
Q Consensus 90 ~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~ 135 (241)
.+.+..+..+.... ++|||+-.+-.....+.+|+.+||+.++.
T Consensus 337 ~~~i~~~~~~~~~~---~vpVIadGGI~~~~di~kAla~GA~~V~v 379 (505)
T PLN02274 337 ATAVYKVASIAAQH---GVPVIADGGISNSGHIVKALTLGASTVMM 379 (505)
T ss_pred ccHHHHHHHHHHhc---CCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 34555666666532 68999999999999999999999998754
No 158
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=84.37 E-value=10 Score=32.62 Aligned_cols=91 Identities=14% Similarity=0.142 Sum_probs=56.6
Q ss_pred eEEEEeCCHHHH--------HHHHHHhhcCCC--EE-EEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeC
Q 026239 17 HVLAVDDSIIDR--------KLIERLLKTSSY--QV-TTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDY 85 (241)
Q Consensus 17 ~ILiVdd~~~~~--------~~l~~~L~~~g~--~v-~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~ 85 (241)
.|||-|.+.... ..+..+-+..++ .| +.+++.+++.+.+.. .+|+|++|-
T Consensus 161 ~vLikdNHi~~~~~g~~~i~~av~~~r~~~~~~~kIeVEv~slee~~ea~~~-------------------gaDiImLDn 221 (281)
T PRK06543 161 AVMAKDNHLAALAAQGLDLTEALRHVRAQLGHTTHVEVEVDRLDQIEPVLAA-------------------GVDTIMLDN 221 (281)
T ss_pred eEEEeHHHHHHHhCCchHHHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHhc-------------------CCCEEEECC
Confidence 377777775542 233333333443 34 478999999998842 356999994
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhccccc
Q 026239 86 CMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEF 133 (241)
Q Consensus 86 ~mp~~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~ 133 (241)
|+..+--+.+..++ ...++-.|+.-+.+.+......|+|-.
T Consensus 222 -~s~e~l~~av~~~~------~~~~leaSGgI~~~ni~~yA~tGVD~I 262 (281)
T PRK06543 222 -FSLDDLREGVELVD------GRAIVEASGNVNLNTVGAIASTGVDVI 262 (281)
T ss_pred -CCHHHHHHHHHHhC------CCeEEEEECCCCHHHHHHHHhcCCCEE
Confidence 33222233333333 223677888889999999889998643
No 159
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=84.34 E-value=8.9 Score=33.90 Aligned_cols=106 Identities=16% Similarity=0.344 Sum_probs=73.4
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhcCCC----EEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCC
Q 026239 13 ESQFHVLAVDDSIIDRKLIERLLKTSSY----QVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMP 88 (241)
Q Consensus 13 ~~~~~ILiVdd~~~~~~~l~~~L~~~g~----~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp 88 (241)
...+-..+.++-..+.+++..+=...+. .+.+..|..+.++++... .....+++.+--.-+
T Consensus 115 ~g~yGa~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI~~d~~kTvd~ak~~---------------e~aG~~~ltVHGRtr 179 (358)
T KOG2335|consen 115 RGGYGAFLMDNPELVGEMVSAVRANLNVPVSVKIRIFVDLEKTVDYAKML---------------EDAGVSLLTVHGRTR 179 (358)
T ss_pred cCCccceeccCHHHHHHHHHHHHhhcCCCeEEEEEecCcHHHHHHHHHHH---------------HhCCCcEEEEecccH
Confidence 3456778888888888877776655553 344677888888777532 233445666655554
Q ss_pred CCCH-------HHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHH-hccccccc
Q 026239 89 GMTG-------YDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLE-EGAEEFFL 135 (241)
Q Consensus 89 ~~~g-------~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~-~Ga~~~l~ 135 (241)
...| ++.++.|++..+ ++|||+=.+-.....+.+|++ .|+++++.
T Consensus 180 ~~kg~~~~pad~~~i~~v~~~~~--~ipviaNGnI~~~~d~~~~~~~tG~dGVM~ 232 (358)
T KOG2335|consen 180 EQKGLKTGPADWEAIKAVRENVP--DIPVIANGNILSLEDVERCLKYTGADGVMS 232 (358)
T ss_pred HhcCCCCCCcCHHHHHHHHHhCc--CCcEEeeCCcCcHHHHHHHHHHhCCceEEe
Confidence 4433 789999998754 688887777777788899998 89888643
No 160
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=84.10 E-value=7.8 Score=34.00 Aligned_cols=82 Identities=20% Similarity=0.273 Sum_probs=54.0
Q ss_pred HHHhhcCCCEEE-EECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEe-CCCC-----CC-CHHHHHHHHHhcC
Q 026239 32 ERLLKTSSYQVT-TVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITD-YCMP-----GM-TGYDLLKKIKESS 103 (241)
Q Consensus 32 ~~~L~~~g~~v~-~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD-~~mp-----~~-~g~~ll~~ir~~~ 103 (241)
...++..|..|. .+.+..+|..++.. .+|.||+- ..-. .. +-+.|+..++...
T Consensus 129 i~~l~~~gi~v~~~v~s~~~A~~a~~~-------------------G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~~ 189 (330)
T PF03060_consen 129 IERLHAAGIKVIPQVTSVREARKAAKA-------------------GADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDAV 189 (330)
T ss_dssp HHHHHHTT-EEEEEESSHHHHHHHHHT-------------------T-SEEEEE-TTSSEE---SSG-HHHHHHHHHHH-
T ss_pred HHHHHHcCCccccccCCHHHHHHhhhc-------------------CCCEEEEeccccCCCCCccccceeeHHHHHhhhc
Confidence 345777787665 78999999887643 24576664 3221 12 3577888888754
Q ss_pred CCCCCcEEEEccCCChHHHHHHHHhccccccc
Q 026239 104 SLRDIPVVIMSSENVPSRISRCLEEGAEEFFL 135 (241)
Q Consensus 104 ~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~ 135 (241)
++|||+-.+-.+...+..++.+||+++..
T Consensus 190 ---~iPViaAGGI~dg~~iaaal~lGA~gV~~ 218 (330)
T PF03060_consen 190 ---DIPVIAAGGIADGRGIAAALALGADGVQM 218 (330)
T ss_dssp ---SS-EEEESS--SHHHHHHHHHCT-SEEEE
T ss_pred ---CCcEEEecCcCCHHHHHHHHHcCCCEeec
Confidence 69999988888888899999999998743
No 161
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=83.84 E-value=3.6 Score=32.97 Aligned_cols=30 Identities=13% Similarity=0.014 Sum_probs=25.8
Q ss_pred EEEEeCCHHHHHHHHHHhhcCCCEEEEECC
Q 026239 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDS 47 (241)
Q Consensus 18 ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~ 47 (241)
||+||....+-..+.++|...|+.+.+..+
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~v~v~~~ 31 (188)
T TIGR00566 2 VLMIDNYDSFTYNLVQYFCELGAEVVVKRN 31 (188)
T ss_pred EEEEECCcCHHHHHHHHHHHcCCceEEEEC
Confidence 899999988888899999988998876653
No 162
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=83.65 E-value=10 Score=27.52 Aligned_cols=74 Identities=16% Similarity=0.207 Sum_probs=49.0
Q ss_pred eCCHHHHHHHHHHhhcCCCEEEEEC---CHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCC-CHHHHHH
Q 026239 22 DDSIIDRKLIERLLKTSSYQVTTVD---SGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGM-TGYDLLK 97 (241)
Q Consensus 22 dd~~~~~~~l~~~L~~~g~~v~~~~---~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~-~g~~ll~ 97 (241)
|.+..-...+..+|+..||.+.... +..+.++.+.... ||+|.+...+... ..+..+.
T Consensus 10 ~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~~~i~~~~------------------pdiV~iS~~~~~~~~~~~~~~ 71 (125)
T cd02065 10 DVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIVEAAKEED------------------ADVVGLSALSTTHMEAMKLVI 71 (125)
T ss_pred chhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHHHHHHHcC------------------CCEEEEecchHhHHHHHHHHH
Confidence 4556666778888999999988653 4566666665444 5599998766543 3566677
Q ss_pred HHHhcCCCCCCcEEEEc
Q 026239 98 KIKESSSLRDIPVVIMS 114 (241)
Q Consensus 98 ~ir~~~~~~~ipvIils 114 (241)
.+++..+ .+++|++-.
T Consensus 72 ~~~~~~p-~~~~ivvGG 87 (125)
T cd02065 72 EALKELG-IDIPVVVGG 87 (125)
T ss_pred HHHHhcC-CCCeEEEeC
Confidence 7776543 156666544
No 163
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=83.60 E-value=9.4 Score=30.78 Aligned_cols=100 Identities=18% Similarity=0.304 Sum_probs=58.4
Q ss_pred CcceEEEEeCCH----HHHHHHHHHhhcCCCEEE-EECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeC---
Q 026239 14 SQFHVLAVDDSI----IDRKLIERLLKTSSYQVT-TVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDY--- 85 (241)
Q Consensus 14 ~~~~ILiVdd~~----~~~~~l~~~L~~~g~~v~-~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~--- 85 (241)
....|+.+|--. .....+-..++..+.-+. -+++.++++..... .+|+|=+-+
T Consensus 63 aGadIIAlDaT~R~Rp~~l~~li~~i~~~~~l~MADist~ee~~~A~~~-------------------G~D~I~TTLsGY 123 (192)
T PF04131_consen 63 AGADIIALDATDRPRPETLEELIREIKEKYQLVMADISTLEEAINAAEL-------------------GFDIIGTTLSGY 123 (192)
T ss_dssp CT-SEEEEE-SSSS-SS-HHHHHHHHHHCTSEEEEE-SSHHHHHHHHHT-------------------T-SEEE-TTTTS
T ss_pred cCCCEEEEecCCCCCCcCHHHHHHHHHHhCcEEeeecCCHHHHHHHHHc-------------------CCCEEEcccccC
Confidence 456677777432 122233333444443222 56789999887643 355554422
Q ss_pred ---CCCCCCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccC
Q 026239 86 ---CMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLK 136 (241)
Q Consensus 86 ---~mp~~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~K 136 (241)
.......++|++.|... .+|||.=.....++.+.+++++||+..+.-
T Consensus 124 T~~t~~~~pD~~lv~~l~~~----~~pvIaEGri~tpe~a~~al~~GA~aVVVG 173 (192)
T PF04131_consen 124 TPYTKGDGPDFELVRELVQA----DVPVIAEGRIHTPEQAAKALELGAHAVVVG 173 (192)
T ss_dssp STTSTTSSHHHHHHHHHHHT----TSEEEEESS--SHHHHHHHHHTT-SEEEE-
T ss_pred CCCCCCCCCCHHHHHHHHhC----CCcEeecCCCCCHHHHHHHHhcCCeEEEEC
Confidence 11233468999999873 689888888889999999999999988653
No 164
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=83.53 E-value=20 Score=30.74 Aligned_cols=38 Identities=16% Similarity=0.211 Sum_probs=31.2
Q ss_pred HHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhccccc
Q 026239 93 YDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEF 133 (241)
Q Consensus 93 ~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~ 133 (241)
++.+..+++.. ++|||...+-.+.+.+.+++..||+.+
T Consensus 223 l~~v~~i~~~~---~ipvi~~GGI~s~~da~~~l~~GAd~V 260 (300)
T TIGR01037 223 LRMVYDVYKMV---DIPIIGVGGITSFEDALEFLMAGASAV 260 (300)
T ss_pred HHHHHHHHhcC---CCCEEEECCCCCHHHHHHHHHcCCCce
Confidence 36777777643 689999999889999999999999863
No 165
>PRK06849 hypothetical protein; Provisional
Probab=83.31 E-value=16 Score=32.59 Aligned_cols=39 Identities=21% Similarity=0.145 Sum_probs=30.7
Q ss_pred CcceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHH
Q 026239 14 SQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKAL 52 (241)
Q Consensus 14 ~~~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al 52 (241)
.+.+|||.+.+....-.+.+.|...|+.|+.+++....+
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~~~ 41 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNAGHTVILADSLKYPL 41 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHH
Confidence 468999999888766777888888999999887655443
No 166
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=83.29 E-value=4.4 Score=33.76 Aligned_cols=58 Identities=24% Similarity=0.256 Sum_probs=45.9
Q ss_pred cccccEEEEeCCCCCC--CHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccc
Q 026239 75 EVGVNLVITDYCMPGM--TGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFF 134 (241)
Q Consensus 75 ~~~~dlIilD~~mp~~--~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l 134 (241)
+...|.|.+|...++. -.++.++.+++... ++|||...+-.+.+.+.++++.||+++.
T Consensus 159 ~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~~--~ipIIgNGgI~s~eda~e~l~~GAd~Vm 218 (231)
T TIGR00736 159 DDGFDGIHVDAMYPGKPYADMDLLKILSEEFN--DKIIIGNNSIDDIESAKEMLKAGADFVS 218 (231)
T ss_pred HcCCCEEEEeeCCCCCchhhHHHHHHHHHhcC--CCcEEEECCcCCHHHHHHHHHhCCCeEE
Confidence 3456788888776664 35889999998542 5899998888889999999999999874
No 167
>PRK07695 transcriptional regulator TenI; Provisional
Probab=83.06 E-value=18 Score=29.12 Aligned_cols=53 Identities=23% Similarity=0.436 Sum_probs=38.3
Q ss_pred cccEEEEeCCCCC-------CCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhccccc
Q 026239 77 GVNLVITDYCMPG-------MTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEF 133 (241)
Q Consensus 77 ~~dlIilD~~mp~-------~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~ 133 (241)
.+|.|+++...|. ..|++.++.++... ++||+++.+- +.+.+..++..|++++
T Consensus 115 Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~---~ipvia~GGI-~~~~~~~~~~~Ga~gv 174 (201)
T PRK07695 115 GADYVVYGHVFPTDCKKGVPARGLEELSDIARAL---SIPVIAIGGI-TPENTRDVLAAGVSGI 174 (201)
T ss_pred CCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhC---CCCEEEEcCC-CHHHHHHHHHcCCCEE
Confidence 3557776543322 23678888888643 6899988776 7888999999999876
No 168
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=83.02 E-value=20 Score=34.38 Aligned_cols=54 Identities=17% Similarity=0.185 Sum_probs=35.2
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhccccccc
Q 026239 77 GVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFL 135 (241)
Q Consensus 77 ~~dlIilD~~mp~~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~ 135 (241)
+.+++|+-..-+ .....++..+|+..+ +++|++-+ .+........+.||+..+.
T Consensus 464 ~A~~vvv~~~d~-~~n~~i~~~ar~~~p--~~~iiaRa--~d~~~~~~L~~~Gad~v~~ 517 (621)
T PRK03562 464 KAEVLINAIDDP-QTSLQLVELVKEHFP--HLQIIARA--RDVDHYIRLRQAGVEKPER 517 (621)
T ss_pred cCCEEEEEeCCH-HHHHHHHHHHHHhCC--CCeEEEEE--CCHHHHHHHHHCCCCEEeh
Confidence 345777755322 234667777887654 78887655 3456677788899987643
No 169
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=83.01 E-value=4.7 Score=34.68 Aligned_cols=52 Identities=23% Similarity=0.406 Sum_probs=39.5
Q ss_pred CHHHHHHHHHhcCCCCCCcEE--EEccCCChHHHHHHHHhccccccc-----CCCCHHHHHH
Q 026239 91 TGYDLLKKIKESSSLRDIPVV--IMSSENVPSRISRCLEEGAEEFFL-----KPVRLSDLNK 145 (241)
Q Consensus 91 ~g~~ll~~ir~~~~~~~ipvI--ils~~~~~~~~~~~l~~Ga~~~l~-----KP~~~~~L~~ 145 (241)
.++++++.+++.. .+||| ...+-..++.+..++++||++++. |.-++....+
T Consensus 190 ~~~elL~ei~~~~---~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~dP~~~ak 248 (293)
T PRK04180 190 APYELVKEVAELG---RLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDPEKRAR 248 (293)
T ss_pred CCHHHHHHHHHhC---CCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCCHHHHHH
Confidence 4789999998854 68998 556666899999999999998843 4446655544
No 170
>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]
Probab=82.99 E-value=0.19 Score=42.32 Aligned_cols=75 Identities=29% Similarity=0.452 Sum_probs=57.4
Q ss_pred ccccEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHH
Q 026239 76 VGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHL 150 (241)
Q Consensus 76 ~~~dlIilD~~mp~~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l 150 (241)
..+|+++.++.||+++|+.++..+.......++|++++............+..|+.+|+.+|....++.....++
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 136 (340)
T KOG1601|consen 62 FSIDLSVPSLDMPGLEGFSLFVSENNPNSLRHPPVPSMPSSNSSSSSSSSVSPSASLELTKPDRKNRLKRSRQHV 136 (340)
T ss_pred ccccccccccccccccccccccccccCCCCCCCCcccccccccchhhhcccCCcccccccccccCCCcccCCccc
Confidence 457899999999999999999988875555677777777766666566777778999999998866655544444
No 171
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=82.72 E-value=19 Score=32.69 Aligned_cols=29 Identities=10% Similarity=0.335 Sum_probs=25.8
Q ss_pred CCcEEEEccCCChHHHHHHHHhccccccc
Q 026239 107 DIPVVIMSSENVPSRISRCLEEGAEEFFL 135 (241)
Q Consensus 107 ~ipvIils~~~~~~~~~~~l~~Ga~~~l~ 135 (241)
.+|||+=.+-..+..+.+|+.+||+.++.
T Consensus 256 ~vpVIAdGGI~~~~Di~KALalGA~aVmv 284 (404)
T PRK06843 256 NICIIADGGIRFSGDVVKAIAAGADSVMI 284 (404)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 68999888888999999999999998754
No 172
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=82.64 E-value=7.7 Score=28.43 Aligned_cols=92 Identities=13% Similarity=0.096 Sum_probs=51.0
Q ss_pred EeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCccccccc-EEEEeCCCCCCCHHHHHHHH
Q 026239 21 VDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVN-LVITDYCMPGMTGYDLLKKI 99 (241)
Q Consensus 21 Vdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~d-lIilD~~mp~~~g~~ll~~i 99 (241)
...+......+...|...|..+....+.......+....+ -| +|++...=...+-.++++..
T Consensus 8 ~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~-----------------~d~vi~iS~sG~t~~~~~~~~~a 70 (128)
T cd05014 8 VGKSGHIARKIAATLSSTGTPAFFLHPTEALHGDLGMVTP-----------------GDVVIAISNSGETDELLNLLPHL 70 (128)
T ss_pred CcHhHHHHHHHHHHhhcCCCceEEcccchhhccccCcCCC-----------------CCEEEEEeCCCCCHHHHHHHHHH
Confidence 3344555666777777778877766554322221111111 12 34444332234456777777
Q ss_pred HhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCC
Q 026239 100 KESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPV 138 (241)
Q Consensus 100 r~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~ 138 (241)
|+. ++|||.+|+..+..... .++..|.-|.
T Consensus 71 ~~~----g~~vi~iT~~~~s~la~-----~ad~~l~~~~ 100 (128)
T cd05014 71 KRR----GAPIIAITGNPNSTLAK-----LSDVVLDLPV 100 (128)
T ss_pred HHC----CCeEEEEeCCCCCchhh-----hCCEEEECCC
Confidence 764 68999999977655432 3555555543
No 173
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=82.60 E-value=16 Score=30.07 Aligned_cols=62 Identities=16% Similarity=0.201 Sum_probs=37.8
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCCCCCc-EEE-EccCCChHHHHHHHHhcccccccCCCCHHHHH
Q 026239 80 LVITDYCMPGMTGYDLLKKIKESSSLRDIP-VVI-MSSENVPSRISRCLEEGAEEFFLKPVRLSDLN 144 (241)
Q Consensus 80 lIilD~~mp~~~g~~ll~~ir~~~~~~~ip-vIi-ls~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~ 144 (241)
+=++.+.|-.-++++.++.|++..+ +-| +++ ...--+.+.+..+.++||+ |+.-|.-..++.
T Consensus 39 i~~iEit~~~~~a~~~i~~l~~~~~--~~p~~~vGaGTV~~~~~~~~a~~aGA~-FivsP~~~~~v~ 102 (213)
T PRK06552 39 IKAIEVTYTNPFASEVIKELVELYK--DDPEVLIGAGTVLDAVTARLAILAGAQ-FIVSPSFNRETA 102 (213)
T ss_pred CCEEEEECCCccHHHHHHHHHHHcC--CCCCeEEeeeeCCCHHHHHHHHHcCCC-EEECCCCCHHHH
Confidence 3345555556668888888876532 212 322 2334567778888888884 777776555553
No 174
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=82.39 E-value=6.8 Score=32.21 Aligned_cols=53 Identities=21% Similarity=0.374 Sum_probs=40.2
Q ss_pred EEEEeCCCCCC---CHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhccccccc
Q 026239 80 LVITDYCMPGM---TGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFL 135 (241)
Q Consensus 80 lIilD~~mp~~---~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~ 135 (241)
++++|...-++ ..+++++.+++.. ++||++-.+-.+.+.+..+++.|+++++.
T Consensus 163 iii~~~~~~g~~~g~~~~~i~~i~~~~---~ipvi~~GGi~~~~di~~~~~~Ga~gv~v 218 (234)
T cd04732 163 IIYTDISRDGTLSGPNFELYKELAAAT---GIPVIASGGVSSLDDIKALKELGVAGVIV 218 (234)
T ss_pred EEEEeecCCCccCCCCHHHHHHHHHhc---CCCEEEecCCCCHHHHHHHHHCCCCEEEE
Confidence 66777644322 2368888888753 68999988888888899999999998654
No 175
>PRK05637 anthranilate synthase component II; Provisional
Probab=82.34 E-value=6.4 Score=32.16 Aligned_cols=33 Identities=15% Similarity=0.146 Sum_probs=27.5
Q ss_pred ceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCH
Q 026239 16 FHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSG 48 (241)
Q Consensus 16 ~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~ 48 (241)
.+||+||....+-..+.+.|+..|+.+.++...
T Consensus 2 ~~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~ 34 (208)
T PRK05637 2 THVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNT 34 (208)
T ss_pred CEEEEEECCcCHHHHHHHHHHHCCCcEEEEeCC
Confidence 579999998888888999999999888776553
No 176
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=82.29 E-value=2.3 Score=34.32 Aligned_cols=31 Identities=10% Similarity=0.048 Sum_probs=27.1
Q ss_pred EEEEeCCHHHHHHHHHHhhcCCCEEEEECCH
Q 026239 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSG 48 (241)
Q Consensus 18 ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~ 48 (241)
|||||....+-..|...|++.|+.+.++...
T Consensus 2 il~idn~dsft~nl~~~l~~~g~~v~v~~~~ 32 (195)
T PRK07649 2 ILMIDNYDSFTFNLVQFLGELGQELVVKRND 32 (195)
T ss_pred EEEEeCCCccHHHHHHHHHHCCCcEEEEeCC
Confidence 8999999999999999999999988876654
No 177
>PRK04302 triosephosphate isomerase; Provisional
Probab=82.20 E-value=26 Score=28.71 Aligned_cols=43 Identities=21% Similarity=0.316 Sum_probs=32.7
Q ss_pred HHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCC
Q 026239 93 YDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137 (241)
Q Consensus 93 ~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP 137 (241)
.++++.++... .++|||.-.+-..++.+..++..|+++++.-.
T Consensus 161 ~~~~~~ir~~~--~~~pvi~GggI~~~e~~~~~~~~gadGvlVGs 203 (223)
T PRK04302 161 EDAVEAVKKVN--PDVKVLCGAGISTGEDVKAALELGADGVLLAS 203 (223)
T ss_pred HHHHHHHHhcc--CCCEEEEECCCCCHHHHHHHHcCCCCEEEEeh
Confidence 35566677643 26899988888888899999999999987543
No 178
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=82.11 E-value=12 Score=30.57 Aligned_cols=52 Identities=15% Similarity=0.325 Sum_probs=29.7
Q ss_pred CCCCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHH
Q 026239 88 PGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDL 143 (241)
Q Consensus 88 p~~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L 143 (241)
-.-+.++.++++++..+ ++. |-...--+.+....+.++||+ |+.-|....++
T Consensus 42 ~t~~a~~~i~~l~~~~~--~~~-vGAGTVl~~~~a~~a~~aGA~-FivsP~~~~~v 93 (204)
T TIGR01182 42 RTPVALDAIRLLRKEVP--DAL-IGAGTVLNPEQLRQAVDAGAQ-FIVSPGLTPEL 93 (204)
T ss_pred CCccHHHHHHHHHHHCC--CCE-EEEEeCCCHHHHHHHHHcCCC-EEECCCCCHHH
Confidence 33457777777776542 322 222333456677778888874 66666544444
No 179
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=81.86 E-value=7.3 Score=33.61 Aligned_cols=91 Identities=15% Similarity=0.119 Sum_probs=56.5
Q ss_pred eEEEEeCCHHHHHHHHHHh----hcCCC--EEE-EECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCC
Q 026239 17 HVLAVDDSIIDRKLIERLL----KTSSY--QVT-TVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPG 89 (241)
Q Consensus 17 ~ILiVdd~~~~~~~l~~~L----~~~g~--~v~-~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~ 89 (241)
.|||-|.+....-.+...+ +..++ .|. .+++.+++.+++.. .+|+|++|-.-|
T Consensus 169 ~iLIkdNHi~~~g~i~~av~~~r~~~~~~~kIeVEv~tleea~~a~~a-------------------gaDiImLDnmsp- 228 (290)
T PRK06559 169 AIMLKDNHIAAVGSVQKAIAQARAYAPFVKMVEVEVESLAAAEEAAAA-------------------GADIIMLDNMSL- 228 (290)
T ss_pred eEEEcHHHHHhhccHHHHHHHHHHhCCCCCeEEEECCCHHHHHHHHHc-------------------CCCEEEECCCCH-
Confidence 3677777765553344433 23342 343 68999999998843 367999994322
Q ss_pred CCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhccccc
Q 026239 90 MTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEF 133 (241)
Q Consensus 90 ~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~ 133 (241)
.+--+.++.++ .-.++-.|+.-+.+.+......|+|-.
T Consensus 229 e~l~~av~~~~------~~~~leaSGGI~~~ni~~yA~tGVD~I 266 (290)
T PRK06559 229 EQIEQAITLIA------GRSRIECSGNIDMTTISRFRGLAIDYV 266 (290)
T ss_pred HHHHHHHHHhc------CceEEEEECCCCHHHHHHHHhcCCCEE
Confidence 22223333332 124677788888999988889998643
No 180
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=81.85 E-value=8.6 Score=32.82 Aligned_cols=94 Identities=21% Similarity=0.299 Sum_probs=55.8
Q ss_pred cceEEEEeCCHHHHHHHHHHhhcCCCEEE-EECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCC--C
Q 026239 15 QFHVLAVDDSIIDRKLIERLLKTSSYQVT-TVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGM--T 91 (241)
Q Consensus 15 ~~~ILiVdd~~~~~~~l~~~L~~~g~~v~-~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~--~ 91 (241)
...+++++|....+.+|..+=-... -+. ...+..+.+..+...-.. ..-=.++.|..||.. .
T Consensus 30 ~~D~iaaEDTR~t~~LL~~~~I~~~-~is~h~hne~~~~~~li~~l~~--------------g~~valVSDAG~P~ISDP 94 (275)
T COG0313 30 EVDVIAAEDTRVTRKLLSHLGIKTP-LISYHEHNEKEKLPKLIPLLKK--------------GKSVALVSDAGTPLISDP 94 (275)
T ss_pred hCCEEEEeccHHHHHHHHHhCCCCc-eecccCCcHHHHHHHHHHHHhc--------------CCeEEEEecCCCCcccCc
Confidence 4678999999988876655321111 111 122333333333221111 111278899999975 4
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhc
Q 026239 92 GYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEG 129 (241)
Q Consensus 92 g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~G 129 (241)
|+.|++..++. +++|+.+.+.+. .+.....+|
T Consensus 95 G~~LV~~a~~~----gi~V~~lPG~sA--~~tAL~~SG 126 (275)
T COG0313 95 GYELVRAAREA----GIRVVPLPGPSA--LITALSASG 126 (275)
T ss_pred cHHHHHHHHHc----CCcEEecCCccH--HHHHHHHcC
Confidence 99999999985 689999987653 233334455
No 181
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=81.84 E-value=14 Score=29.47 Aligned_cols=86 Identities=16% Similarity=0.149 Sum_probs=51.0
Q ss_pred hcCcceEEEEeCCHHHHHHHHHHhhcCCCE--E-EEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCC
Q 026239 12 AESQFHVLAVDDSIIDRKLIERLLKTSSYQ--V-TTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMP 88 (241)
Q Consensus 12 ~~~~~~ILiVdd~~~~~~~l~~~L~~~g~~--v-~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp 88 (241)
+...-+|..||-+......++.-++..+.. + +...+...++..+.. ....||+|++|=--.
T Consensus 62 SRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~----------------~~~~fDiIflDPPY~ 125 (183)
T PF03602_consen 62 SRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAK----------------KGEKFDIIFLDPPYA 125 (183)
T ss_dssp HTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHH----------------CTS-EEEEEE--STT
T ss_pred hcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcc----------------cCCCceEEEECCCcc
Confidence 344568999999999999999999877632 3 355677777765532 134588999993221
Q ss_pred CCCH-HHHHHHHHhcCCCCCCcEEEE
Q 026239 89 GMTG-YDLLKKIKESSSLRDIPVVIM 113 (241)
Q Consensus 89 ~~~g-~~ll~~ir~~~~~~~ipvIil 113 (241)
.... .+++..|.+..-...--+|++
T Consensus 126 ~~~~~~~~l~~l~~~~~l~~~~~ii~ 151 (183)
T PF03602_consen 126 KGLYYEELLELLAENNLLNEDGLIII 151 (183)
T ss_dssp SCHHHHHHHHHHHHTTSEEEEEEEEE
T ss_pred cchHHHHHHHHHHHCCCCCCCEEEEE
Confidence 2222 567888875443323334444
No 182
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=81.83 E-value=18 Score=26.44 Aligned_cols=85 Identities=8% Similarity=-0.010 Sum_probs=51.7
Q ss_pred ceEEEEe--CCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHH
Q 026239 16 FHVLAVD--DSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGY 93 (241)
Q Consensus 16 ~~ILiVd--d~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~ 93 (241)
-+|+++. ........+...|...|+.+..+.+............++ -=+|++...--..+..
T Consensus 14 ~~i~i~g~g~s~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~i~iS~~g~~~~~~ 77 (139)
T cd05013 14 RRIYIFGVGSSGLVAEYLAYKLLRLGKPVVLLSDPHLQLMSAANLTPG----------------DVVIAISFSGETKETV 77 (139)
T ss_pred CEEEEEEcCchHHHHHHHHHHHHHcCCceEEecCHHHHHHHHHcCCCC----------------CEEEEEeCCCCCHHHH
Confidence 3455554 445555667777778888888777766655444322222 1155555543344556
Q ss_pred HHHHHHHhcCCCCCCcEEEEccCCChH
Q 026239 94 DLLKKIKESSSLRDIPVVIMSSENVPS 120 (241)
Q Consensus 94 ~ll~~ir~~~~~~~ipvIils~~~~~~ 120 (241)
++++.++.. .+++|++|+..+..
T Consensus 78 ~~~~~a~~~----g~~iv~iT~~~~~~ 100 (139)
T cd05013 78 EAAEIAKER----GAKVIAITDSANSP 100 (139)
T ss_pred HHHHHHHHc----CCeEEEEcCCCCCh
Confidence 777777764 57999999976543
No 183
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=81.81 E-value=15 Score=34.23 Aligned_cols=29 Identities=21% Similarity=0.348 Sum_probs=24.8
Q ss_pred CCcEEEEccCCChHHHHHHHHhccccccc
Q 026239 107 DIPVVIMSSENVPSRISRCLEEGAEEFFL 135 (241)
Q Consensus 107 ~ipvIils~~~~~~~~~~~l~~Ga~~~l~ 135 (241)
++|||.-.+-..+..+.+|+.+||+.+..
T Consensus 344 ~v~vIadGGi~~~~di~kAla~GA~~Vm~ 372 (495)
T PTZ00314 344 GVPCIADGGIKNSGDICKALALGADCVML 372 (495)
T ss_pred CCeEEecCCCCCHHHHHHHHHcCCCEEEE
Confidence 68988877888899999999999987754
No 184
>PLN02335 anthranilate synthase
Probab=81.70 E-value=4.2 Score=33.55 Aligned_cols=34 Identities=3% Similarity=-0.049 Sum_probs=26.5
Q ss_pred CcceEEEEeCCHHHHHHHHHHhhcCCCEEEEECC
Q 026239 14 SQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDS 47 (241)
Q Consensus 14 ~~~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~ 47 (241)
...+|||||....+-..|.+.|...|+.+.++..
T Consensus 17 ~~~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~ 50 (222)
T PLN02335 17 QNGPIIVIDNYDSFTYNLCQYMGELGCHFEVYRN 50 (222)
T ss_pred ccCcEEEEECCCCHHHHHHHHHHHCCCcEEEEEC
Confidence 3578999997666677788899989988876654
No 185
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=81.56 E-value=7.3 Score=32.03 Aligned_cols=53 Identities=19% Similarity=0.313 Sum_probs=41.8
Q ss_pred EEEEeCCCCCC-CH--HHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhc-cccccc
Q 026239 80 LVITDYCMPGM-TG--YDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEG-AEEFFL 135 (241)
Q Consensus 80 lIilD~~mp~~-~g--~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~G-a~~~l~ 135 (241)
++++|...-++ .| +++++.+++.. .+|||.-.+-.+.+.+..+++.| |++++.
T Consensus 163 ii~~~~~~~g~~~G~d~~~i~~l~~~~---~ipvia~GGi~~~~di~~~~~~g~~~gv~v 219 (233)
T PRK00748 163 IIYTDISRDGTLSGPNVEATRELAAAV---PIPVIASGGVSSLDDIKALKGLGAVEGVIV 219 (233)
T ss_pred EEEeeecCcCCcCCCCHHHHHHHHHhC---CCCEEEeCCCCCHHHHHHHHHcCCccEEEE
Confidence 78887765432 34 78899998753 58999988888999999999988 988764
No 186
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=81.23 E-value=5.4 Score=33.92 Aligned_cols=57 Identities=18% Similarity=0.363 Sum_probs=41.1
Q ss_pred CHHHHHHHHHhcCCCCCCcEEEEccCCC------hHHHHHHHHhcccccccCCCCHHHHHHhhHH
Q 026239 91 TGYDLLKKIKESSSLRDIPVVIMSSENV------PSRISRCLEEGAEEFFLKPVRLSDLNKLKPH 149 (241)
Q Consensus 91 ~g~~ll~~ir~~~~~~~ipvIils~~~~------~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~ 149 (241)
+-+++++.+|.... .+|+++|+-.+. .....+|.+.|++++|.--+.+++-..+...
T Consensus 80 ~~lel~~~~r~~~~--~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~ 142 (265)
T COG0159 80 DTLELVEEIRAKGV--KVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKA 142 (265)
T ss_pred HHHHHHHHHHhcCC--CCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHH
Confidence 34778888887654 899999997543 3446688999999999977766654444433
No 187
>PRK05670 anthranilate synthase component II; Provisional
Probab=81.21 E-value=4.3 Score=32.40 Aligned_cols=30 Identities=13% Similarity=0.052 Sum_probs=25.7
Q ss_pred EEEEeCCHHHHHHHHHHhhcCCCEEEEECC
Q 026239 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDS 47 (241)
Q Consensus 18 ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~ 47 (241)
|||||-...+-..+.++|...|+.+..+..
T Consensus 2 iliid~~d~f~~~i~~~l~~~g~~~~v~~~ 31 (189)
T PRK05670 2 ILLIDNYDSFTYNLVQYLGELGAEVVVYRN 31 (189)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEEC
Confidence 899999988888999999999988876643
No 188
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=81.17 E-value=9.6 Score=31.48 Aligned_cols=59 Identities=12% Similarity=0.117 Sum_probs=41.6
Q ss_pred cceEEEEeCCHHHHHHHHHHhhcCCC--EEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCC
Q 026239 15 QFHVLAVDDSIIDRKLIERLLKTSSY--QVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPG 89 (241)
Q Consensus 15 ~~~ILiVdd~~~~~~~l~~~L~~~g~--~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~ 89 (241)
.-+|.-||-++...+..++.|+..|+ .|..... -+|++.+... ....||+||+|..=+.
T Consensus 84 ~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~-gdal~~l~~~---------------~~~~fDliFIDadK~~ 144 (219)
T COG4122 84 DGRLTTIERDEERAEIARENLAEAGVDDRIELLLG-GDALDVLSRL---------------LDGSFDLVFIDADKAD 144 (219)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEec-CcHHHHHHhc---------------cCCCccEEEEeCChhh
Confidence 45899999999999999999999886 3443332 3455555431 2346899999986543
No 189
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=81.05 E-value=9 Score=33.06 Aligned_cols=69 Identities=19% Similarity=0.190 Sum_probs=46.1
Q ss_pred EEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEccCCChHH
Q 026239 42 VTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSR 121 (241)
Q Consensus 42 v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~ 121 (241)
.+.+++.+++.+++.. .+|+|.+| +|+..+--+.++.++...+ + ..+..|+.-+.+.
T Consensus 203 eVEv~tl~ea~eal~~-------------------gaDiI~LD-nm~~e~vk~av~~~~~~~~--~-v~ieaSGGI~~~n 259 (289)
T PRK07896 203 EVEVDSLEQLDEVLAE-------------------GAELVLLD-NFPVWQTQEAVQRRDARAP--T-VLLESSGGLTLDT 259 (289)
T ss_pred EEEcCCHHHHHHHHHc-------------------CCCEEEeC-CCCHHHHHHHHHHHhccCC--C-EEEEEECCCCHHH
Confidence 3478899999998842 35699999 4442222333444443322 3 3667788888999
Q ss_pred HHHHHHhccccc
Q 026239 122 ISRCLEEGAEEF 133 (241)
Q Consensus 122 ~~~~l~~Ga~~~ 133 (241)
+....+.|+|.+
T Consensus 260 i~~yA~tGvD~I 271 (289)
T PRK07896 260 AAAYAETGVDYL 271 (289)
T ss_pred HHHHHhcCCCEE
Confidence 999999998754
No 190
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=80.80 E-value=17 Score=29.69 Aligned_cols=59 Identities=12% Similarity=0.259 Sum_probs=37.2
Q ss_pred EEeCCCCCCCHHHHHHHHHhcCCCCCCcEEE-EccCCChHHHHHHHHhcccccccCCCCHHHHH
Q 026239 82 ITDYCMPGMTGYDLLKKIKESSSLRDIPVVI-MSSENVPSRISRCLEEGAEEFFLKPVRLSDLN 144 (241)
Q Consensus 82 ilD~~mp~~~g~~ll~~ir~~~~~~~ipvIi-ls~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~ 144 (241)
++.+.+-+-++.+.++.|+...+ . ++++ ...--+.+.+..++++||+ |+.-|....++.
T Consensus 38 ~iEvt~~~~~~~~~i~~l~~~~~--~-~~~iGaGTV~~~~~~~~a~~aGA~-fivsp~~~~~v~ 97 (206)
T PRK09140 38 AIEIPLNSPDPFDSIAALVKALG--D-RALIGAGTVLSPEQVDRLADAGGR-LIVTPNTDPEVI 97 (206)
T ss_pred EEEEeCCCccHHHHHHHHHHHcC--C-CcEEeEEecCCHHHHHHHHHcCCC-EEECCCCCHHHH
Confidence 55556666678888888887542 2 3332 2334467778889999994 666675544543
No 191
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=80.79 E-value=24 Score=30.71 Aligned_cols=64 Identities=11% Similarity=0.181 Sum_probs=41.3
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHHH
Q 026239 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMK 152 (241)
Q Consensus 79 dlIilD~~mp~~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~~ 152 (241)
|++++-.. ...-|..+++.+.. .+|||+ |.... ..+.+..|..+++..|-+.++|...+..++.
T Consensus 274 di~v~pS~-~Eg~~~~~lEAma~-----G~Pvv~-s~~~g---~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~ 337 (374)
T TIGR03088 274 DLFVLPSL-AEGISNTILEAMAS-----GLPVIA-TAVGG---NPELVQHGVTGALVPPGDAVALARALQPYVS 337 (374)
T ss_pred CEEEeccc-cccCchHHHHHHHc-----CCCEEE-cCCCC---cHHHhcCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 46654322 23346677777764 678876 33322 2345567888999999999999877766654
No 192
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=80.77 E-value=12 Score=38.66 Aligned_cols=103 Identities=14% Similarity=0.217 Sum_probs=67.3
Q ss_pred cceEEEE----eCCHHHHHHHHHHhhcCCCEEEEEC---CHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCC
Q 026239 15 QFHVLAV----DDSIIDRKLIERLLKTSSYQVTTVD---SGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCM 87 (241)
Q Consensus 15 ~~~ILiV----dd~~~~~~~l~~~L~~~g~~v~~~~---~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~m 87 (241)
..+||+. |-+.+=..++.-+|+..||+|+... ..++.++.+....+ |+|.+...|
T Consensus 751 ~gkvvlaTv~GDvHDIGkniV~~~L~~~GfeVIdLG~~vp~e~iv~aa~e~~~------------------diVgLS~L~ 812 (1229)
T PRK09490 751 NGKILMATVKGDVHDIGKNIVGVVLQCNNYEVIDLGVMVPAEKILETAKEENA------------------DIIGLSGLI 812 (1229)
T ss_pred CCeEEEEeCCCCcchHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHhCC------------------CEEEEcCcc
Confidence 4677777 6777777778888999999998643 56777787765544 499888776
Q ss_pred CC-CC-HHHHHHHHHhcCCCCCCcEEEEccCCChHH-HHHH-HH-hcccccccCC
Q 026239 88 PG-MT-GYDLLKKIKESSSLRDIPVVIMSSENVPSR-ISRC-LE-EGAEEFFLKP 137 (241)
Q Consensus 88 p~-~~-g~~ll~~ir~~~~~~~ipvIils~~~~~~~-~~~~-l~-~Ga~~~l~KP 137 (241)
.. +. -.++++.|++.+. ++||++-.+..+... ...+ -. .|++.|..--
T Consensus 813 t~s~~~m~~~i~~L~~~g~--~v~v~vGGa~~s~~~ta~~i~~~y~gad~y~~DA 865 (1229)
T PRK09490 813 TPSLDEMVHVAKEMERQGF--TIPLLIGGATTSKAHTAVKIAPNYSGPVVYVTDA 865 (1229)
T ss_pred hhhHHHHHHHHHHHHhcCC--CCeEEEEeeccchhhhhhhhhhcccCCcEEecCH
Confidence 53 32 3567888888754 788877655444322 1111 11 2887775533
No 193
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=80.72 E-value=21 Score=29.29 Aligned_cols=52 Identities=27% Similarity=0.377 Sum_probs=39.8
Q ss_pred ccEEEEeCCCC-------CCCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhccccc
Q 026239 78 VNLVITDYCMP-------GMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEF 133 (241)
Q Consensus 78 ~dlIilD~~mp-------~~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~ 133 (241)
+|-|.+.-..| ...|++.++++++.. .+|+|.+.+- +.+.+...++.||++.
T Consensus 125 ~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~---~iP~vAIGGi-~~~nv~~v~~~Ga~gV 183 (211)
T COG0352 125 ADYVGLGPIFPTSTKPDAPPLGLEGLREIRELV---NIPVVAIGGI-NLENVPEVLEAGADGV 183 (211)
T ss_pred CCEEEECCcCCCCCCCCCCccCHHHHHHHHHhC---CCCEEEEcCC-CHHHHHHHHHhCCCeE
Confidence 45677665444 346899999999865 4899988774 5778889999999876
No 194
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=80.64 E-value=22 Score=30.42 Aligned_cols=92 Identities=21% Similarity=0.251 Sum_probs=57.4
Q ss_pred EEEEeCCHHHHHHHHHHhh----cCCCEE--E-EECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCC
Q 026239 18 VLAVDDSIIDRKLIERLLK----TSSYQV--T-TVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGM 90 (241)
Q Consensus 18 ILiVdd~~~~~~~l~~~L~----~~g~~v--~-~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~ 90 (241)
|||=|++....-.++..++ ..+|.+ . .+++.+++.+++.. .+|+|++|-.-| .
T Consensus 161 vliKDNHia~~g~i~~Av~~aR~~~~~~~kIEVEvesle~~~eAl~a-------------------gaDiImLDNm~~-e 220 (280)
T COG0157 161 VLIKDNHIAAAGSITEAVRRARAAAPFTKKIEVEVESLEEAEEALEA-------------------GADIIMLDNMSP-E 220 (280)
T ss_pred EEehhhHHHHhccHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHc-------------------CCCEEEecCCCH-H
Confidence 6677777665554555543 346533 3 68899999998853 467999995333 2
Q ss_pred CHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhccccc
Q 026239 91 TGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEF 133 (241)
Q Consensus 91 ~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~ 133 (241)
.--+.++.+ ....-.++=.|+.-..+.+......|+|-+
T Consensus 221 ~~~~av~~l----~~~~~~~lEaSGgIt~~ni~~yA~tGVD~I 259 (280)
T COG0157 221 ELKEAVKLL----GLAGRALLEASGGITLENIREYAETGVDVI 259 (280)
T ss_pred HHHHHHHHh----ccCCceEEEEeCCCCHHHHHHHhhcCCCEE
Confidence 222333333 112345666788888899988889998643
No 195
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=80.59 E-value=18 Score=30.53 Aligned_cols=43 Identities=21% Similarity=0.405 Sum_probs=32.3
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCC
Q 026239 92 GYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137 (241)
Q Consensus 92 g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP 137 (241)
-.+.++++|+.. +.||++=.+-.+++.+..+.+.|||+++.-.
T Consensus 186 ~~~~i~~lr~~~---~~pi~vgfGI~~~e~~~~~~~~GADgvVvGS 228 (256)
T TIGR00262 186 LNELVKRLKAYS---AKPVLVGFGISKPEQVKQAIDAGADGVIVGS 228 (256)
T ss_pred HHHHHHHHHhhc---CCCEEEeCCCCCHHHHHHHHHcCCCEEEECH
Confidence 356777777643 5687765555568899999999999998765
No 196
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=80.48 E-value=6.8 Score=32.70 Aligned_cols=64 Identities=20% Similarity=0.253 Sum_probs=52.2
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHH
Q 026239 77 GVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLS 141 (241)
Q Consensus 77 ~~dlIilD~~mp~~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~ 141 (241)
.||-+++|..--..|.-.++..|+.....+..|||=.. ..++..+.++++.||..+|.-=++..
T Consensus 38 GfDwl~iD~EHapnd~~sl~~qL~a~~~~~~~pvVR~p-~g~~~~Ikq~LD~GAqtlliPmV~s~ 101 (255)
T COG3836 38 GFDWLLIDGEHAPNDLQSLLHQLQAVAAYASPPVVRPP-VGDPVMIKQLLDIGAQTLLIPMVDTA 101 (255)
T ss_pred CCCEEEecccccCccHHHHHHHHHHhhccCCCCeeeCC-CCCHHHHHHHHccccceeeeeccCCH
Confidence 46799999999999999999999987776677877554 45678899999999999988656543
No 197
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=80.37 E-value=12 Score=32.09 Aligned_cols=68 Identities=21% Similarity=0.266 Sum_probs=47.5
Q ss_pred EEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEccCCChHHH
Q 026239 43 TTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRI 122 (241)
Q Consensus 43 ~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~ 122 (241)
+.+.+.++|.+++.. .+|+|++| .|+..+-.+.++.++... .-.+|..|+.-+.+.+
T Consensus 193 VEv~tleea~ea~~~-------------------GaDiI~lD-n~~~e~l~~~v~~l~~~~---~~~~leasGGI~~~ni 249 (277)
T TIGR01334 193 VEADTIEQALTVLQA-------------------SPDILQLD-KFTPQQLHHLHERLKFFD---HIPTLAAAGGINPENI 249 (277)
T ss_pred EECCCHHHHHHHHHc-------------------CcCEEEEC-CCCHHHHHHHHHHHhccC---CCEEEEEECCCCHHHH
Confidence 467899999998842 36799999 444444445555555322 2236777888889999
Q ss_pred HHHHHhccccc
Q 026239 123 SRCLEEGAEEF 133 (241)
Q Consensus 123 ~~~l~~Ga~~~ 133 (241)
......|+|-+
T Consensus 250 ~~ya~~GvD~i 260 (277)
T TIGR01334 250 ADYIEAGIDLF 260 (277)
T ss_pred HHHHhcCCCEE
Confidence 98889998754
No 198
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=80.36 E-value=3.4 Score=33.08 Aligned_cols=31 Identities=10% Similarity=-0.040 Sum_probs=26.4
Q ss_pred EEEEeCCHHHHHHHHHHhhcCCCEEEEECCH
Q 026239 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSG 48 (241)
Q Consensus 18 ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~ 48 (241)
||+||....+-..|..+|...|+.+.++.+.
T Consensus 2 il~idn~Dsft~nl~~~l~~~g~~v~v~~~~ 32 (187)
T PRK08007 2 ILLIDNYDSFTWNLYQYFCELGADVLVKRND 32 (187)
T ss_pred EEEEECCCccHHHHHHHHHHCCCcEEEEeCC
Confidence 8999999888888999999899888876554
No 199
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=80.36 E-value=6.9 Score=32.47 Aligned_cols=51 Identities=16% Similarity=0.212 Sum_probs=40.0
Q ss_pred EEEEeCCCCCC-CHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhccccccc
Q 026239 80 LVITDYCMPGM-TGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFL 135 (241)
Q Consensus 80 lIilD~~mp~~-~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~ 135 (241)
+|++|+.--|+ .|++ .+.... .++|||+-.+-.+.+.+.++.+.|+++.+.
T Consensus 159 ii~t~i~~dGt~~G~d---~l~~~~--~~~pviasGGv~~~~Dl~~l~~~g~~gviv 210 (228)
T PRK04128 159 FIYTSIERDGTLTGIE---EIERFW--GDEEFIYAGGVSSAEDVKKLAEIGFSGVII 210 (228)
T ss_pred EEEEeccchhcccCHH---HHHHhc--CCCCEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 89999988774 7887 333321 278999998888999999999999998654
No 200
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=80.30 E-value=47 Score=30.33 Aligned_cols=64 Identities=16% Similarity=0.320 Sum_probs=40.8
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHh---cccccccCCCCHHHHHHhhHHHHH
Q 026239 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEE---GAEEFFLKPVRLSDLNKLKPHLMK 152 (241)
Q Consensus 79 dlIilD~~mp~~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~---Ga~~~l~KP~~~~~L~~~~~~l~~ 152 (241)
|++++-.. .+.-|+.+++.+.. .+|||....... .+.+.. |-.+|+..|-+.++|...+..++.
T Consensus 333 Dv~V~pS~-~E~~g~~vlEAmA~-----G~PVI~s~~gg~----~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 399 (465)
T PLN02871 333 DVFVMPSE-SETLGFVVLEAMAS-----GVPVVAARAGGI----PDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLA 399 (465)
T ss_pred CEEEECCc-ccccCcHHHHHHHc-----CCCEEEcCCCCc----HhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 56665332 23335566666653 689985443322 233445 888999999999999877776664
No 201
>PRK15482 transcriptional regulator MurR; Provisional
Probab=80.11 E-value=29 Score=29.47 Aligned_cols=87 Identities=8% Similarity=0.012 Sum_probs=53.2
Q ss_pred cceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCccccccc-EEEEeCCCCCCCHH
Q 026239 15 QFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVN-LVITDYCMPGMTGY 93 (241)
Q Consensus 15 ~~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~d-lIilD~~mp~~~g~ 93 (241)
.+.|+-+..+......+...|...|+.+....+............++ | +|++.+.--..+-.
T Consensus 137 ~I~i~G~G~S~~~A~~l~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~-----------------Dv~i~iS~sg~t~~~~ 199 (285)
T PRK15482 137 FIQITGLGGSALVGRDLSFKLMKIGYRVACEADTHVQATVSQALKKG-----------------DVQIAISYSGSKKEIV 199 (285)
T ss_pred eeEEEEeChhHHHHHHHHHHHHhCCCeeEEeccHhHHHHHHhcCCCC-----------------CEEEEEeCCCCCHHHH
Confidence 34455556677777778888888898888766554433332221111 2 44444433334566
Q ss_pred HHHHHHHhcCCCCCCcEEEEccCCChHHH
Q 026239 94 DLLKKIKESSSLRDIPVVIMSSENVPSRI 122 (241)
Q Consensus 94 ~ll~~ir~~~~~~~ipvIils~~~~~~~~ 122 (241)
++++..++. .++||.+|+.......
T Consensus 200 ~~~~~a~~~----g~~iI~IT~~~~s~la 224 (285)
T PRK15482 200 LCAEAARKQ----GATVIAITSLADSPLR 224 (285)
T ss_pred HHHHHHHHC----CCEEEEEeCCCCCchH
Confidence 777777764 5799999987765543
No 202
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=79.99 E-value=17 Score=37.53 Aligned_cols=104 Identities=13% Similarity=0.208 Sum_probs=68.7
Q ss_pred cceEEEE----eCCHHHHHHHHHHhhcCCCEEEEEC---CHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCC
Q 026239 15 QFHVLAV----DDSIIDRKLIERLLKTSSYQVTTVD---SGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCM 87 (241)
Q Consensus 15 ~~~ILiV----dd~~~~~~~l~~~L~~~g~~v~~~~---~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~m 87 (241)
.-+|++. |-+.+=..++.-+|+..||+|+... ..++.++.+....+ |+|-+...|
T Consensus 732 ~gkVvlaTV~GDvHDIGKnIV~~~L~~~GfeVIdLG~dVp~e~iv~aa~e~~~------------------diVgLS~Lm 793 (1178)
T TIGR02082 732 KGKIVLATVKGDVHDIGKNIVGVVLSCNGYEVVDLGVMVPIEKILEAAKDHNA------------------DVIGLSGLI 793 (1178)
T ss_pred CCeEEEEecCCCccHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHhCC------------------CEEEEcCcc
Confidence 4577766 6666667778888999999998643 46777787765544 488888776
Q ss_pred CC-CC-HHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHH---HHhcccccccCCC
Q 026239 88 PG-MT-GYDLLKKIKESSSLRDIPVVIMSSENVPSRISRC---LEEGAEEFFLKPV 138 (241)
Q Consensus 88 p~-~~-g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~---l~~Ga~~~l~KP~ 138 (241)
.. +. -.++++.|++.+. ++||++-.+..+......- ...|++.|-.--+
T Consensus 794 t~t~~~m~~vi~~L~~~g~--~v~v~vGGa~~s~~~~~~~i~~~~~gad~y~~dA~ 847 (1178)
T TIGR02082 794 TPSLDEMKEVAEEMNRRGI--TIPLLIGGAATSKTHTAVKIAPIYKGPVVYVLDAS 847 (1178)
T ss_pred cccHHHHHHHHHHHHhcCC--CceEEEeccccchhHHHhhhhhhccCCeEEecCHH
Confidence 53 33 3467888888754 6888776655544444321 1238877755433
No 203
>PRK15320 transcriptional activator SprB; Provisional
Probab=79.98 E-value=9.2 Score=31.17 Aligned_cols=100 Identities=14% Similarity=0.060 Sum_probs=64.4
Q ss_pred ceEEEEeCCHHHHHHHHHHhhcC--CCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHH
Q 026239 16 FHVLAVDDSIIDRKLIERLLKTS--SYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGY 93 (241)
Q Consensus 16 ~~ILiVdd~~~~~~~l~~~L~~~--g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~ 93 (241)
.+|+|-.|+-...-.+..+++.. |+.|.++.+....|..+... || ..+|+- +..-.-+
T Consensus 2 r~viiyg~~w~~~~a~~~~~~~~~p~~~~~t~~~l~~ll~~l~~~-p~-----------------a~lil~--l~p~eh~ 61 (251)
T PRK15320 2 RNVIIYGINWTNCYALQSIFKQKYPEKCVKTCNSLTALLHSLSDM-PD-----------------AGLILA--LNPHEHV 61 (251)
T ss_pred CcEEEEeccchHHHHHHHHHHHHCCccchhhhhhHHHHHHHHhhC-CC-----------------ceEEEe--eCchhHH
Confidence 46888899988888888888764 67788888888888877533 33 033333 3333344
Q ss_pred HHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCC
Q 026239 94 DLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137 (241)
Q Consensus 94 ~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP 137 (241)
=+...++...+ +-||++++.+---.+..-.--.|+.+|++|-
T Consensus 62 ~lf~~l~~~l~--~~~v~vv~d~l~~~dr~vl~~~g~~~~~l~~ 103 (251)
T PRK15320 62 YLFHALLTRLQ--NRKVLVVADRLYYIDRCVLQYFGVMDYVLKD 103 (251)
T ss_pred HHHHHHHHHcC--CCceEEEecceeehhhhhhhhhcchhHHHHH
Confidence 45566666543 7899999876433222222346788887763
No 204
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=79.78 E-value=25 Score=29.70 Aligned_cols=83 Identities=8% Similarity=-0.030 Sum_probs=50.5
Q ss_pred ceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCccccccc-EEEEeCCCCCCC--H
Q 026239 16 FHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVN-LVITDYCMPGMT--G 92 (241)
Q Consensus 16 ~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~d-lIilD~~mp~~~--g 92 (241)
+-|+-+..+......+...|...|..+....+.......+....++ | +|++ ..+|.+ -
T Consensus 131 I~i~G~G~s~~~A~~~~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~-----------------Dv~I~i--S~sg~~~~~ 191 (278)
T PRK11557 131 IILTGIGASGLVAQNFAWKLMKIGINAVAERDMHALLATVQALSPD-----------------DLLLAI--SYSGERREL 191 (278)
T ss_pred EEEEecChhHHHHHHHHHHHhhCCCeEEEcCChHHHHHHHHhCCCC-----------------CEEEEE--cCCCCCHHH
Confidence 3344445556667777777778888887766665544444322221 2 3444 444433 4
Q ss_pred HHHHHHHHhcCCCCCCcEEEEccCCChHH
Q 026239 93 YDLLKKIKESSSLRDIPVVIMSSENVPSR 121 (241)
Q Consensus 93 ~~ll~~ir~~~~~~~ipvIils~~~~~~~ 121 (241)
.++++..+.. .++||++|+......
T Consensus 192 ~~~~~~ak~~----ga~iI~IT~~~~s~l 216 (278)
T PRK11557 192 NLAADEALRV----GAKVLAITGFTPNAL 216 (278)
T ss_pred HHHHHHHHHc----CCCEEEEcCCCCCch
Confidence 6777777764 689999999765543
No 205
>PLN02476 O-methyltransferase
Probab=79.74 E-value=33 Score=29.45 Aligned_cols=58 Identities=9% Similarity=0.072 Sum_probs=41.9
Q ss_pred cceEEEEeCCHHHHHHHHHHhhcCCCE--EE-EECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCC
Q 026239 15 QFHVLAVDDSIIDRKLIERLLKTSSYQ--VT-TVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYC 86 (241)
Q Consensus 15 ~~~ILiVdd~~~~~~~l~~~L~~~g~~--v~-~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~ 86 (241)
.-+|.-+|-++......+..++..|+. |. ...+..+.|..+.... ....||+||+|..
T Consensus 143 ~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~--------------~~~~FD~VFIDa~ 203 (278)
T PLN02476 143 SGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNG--------------EGSSYDFAFVDAD 203 (278)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcc--------------cCCCCCEEEECCC
Confidence 457999999999999999999988874 44 4566777766542111 1235899999985
No 206
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=79.70 E-value=3.3 Score=35.17 Aligned_cols=56 Identities=21% Similarity=0.455 Sum_probs=39.8
Q ss_pred CHHHHHHHHHhcCCCCCCcEEEEccCC------ChHHHHHHHHhcccccccCCCCHHHHHHhhH
Q 026239 91 TGYDLLKKIKESSSLRDIPVVIMSSEN------VPSRISRCLEEGAEEFFLKPVRLSDLNKLKP 148 (241)
Q Consensus 91 ~g~~ll~~ir~~~~~~~ipvIils~~~------~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~ 148 (241)
+.+++++++|.... ++|+|+||-.+ ......+|.++|++++|.--+..++-..+..
T Consensus 73 ~~~~~~~~ir~~~~--~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~ 134 (259)
T PF00290_consen 73 KIFELVKEIRKKEP--DIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELRE 134 (259)
T ss_dssp HHHHHHHHHHHHCT--SSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHH
T ss_pred HHHHHHHHHhccCC--CCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHH
Confidence 35788899984443 89999999754 3446777889999999997776665544433
No 207
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=79.52 E-value=6.5 Score=33.97 Aligned_cols=90 Identities=14% Similarity=0.104 Sum_probs=54.8
Q ss_pred eEEEEeCCHHHHHHHHHHhh---cC-C-CEE-EEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCC
Q 026239 17 HVLAVDDSIIDRKLIERLLK---TS-S-YQV-TTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGM 90 (241)
Q Consensus 17 ~ILiVdd~~~~~~~l~~~L~---~~-g-~~v-~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~ 90 (241)
.|||-|.+....-.+...++ .. + ..| +.+++.+++.+++.. .+|+|++|- |+..
T Consensus 178 ~vLIkdNHi~~~G~i~~av~~~r~~~~~~kIeVEvetleea~eA~~a-------------------GaDiImLDn-mspe 237 (294)
T PRK06978 178 GILIKENHIAAAGGVGAALDAAFALNAGVPVQIEVETLAQLETALAH-------------------GAQSVLLDN-FTLD 237 (294)
T ss_pred eEEEeHHHHHHhCCHHHHHHHHHHhCCCCcEEEEcCCHHHHHHHHHc-------------------CCCEEEECC-CCHH
Confidence 36777776554433333332 11 1 234 368899999998842 367999994 3322
Q ss_pred CHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccc
Q 026239 91 TGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEE 132 (241)
Q Consensus 91 ~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~ 132 (241)
+--+.++.++ .-.++-.|+.-+.+.+......|+|-
T Consensus 238 ~l~~av~~~~------~~~~lEaSGGIt~~ni~~yA~tGVD~ 273 (294)
T PRK06978 238 MMREAVRVTA------GRAVLEVSGGVNFDTVRAFAETGVDR 273 (294)
T ss_pred HHHHHHHhhc------CCeEEEEECCCCHHHHHHHHhcCCCE
Confidence 2222333332 22467778888899999888999864
No 208
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=79.41 E-value=6.1 Score=35.76 Aligned_cols=56 Identities=16% Similarity=0.196 Sum_probs=41.4
Q ss_pred ccccEEEEeCCCCC-CCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccc
Q 026239 76 VGVNLVITDYCMPG-MTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFF 134 (241)
Q Consensus 76 ~~~dlIilD~~mp~-~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l 134 (241)
..+|+|++|..-+. ..-.+++++||...+ +++|| +..-...+....++++|||.+.
T Consensus 164 aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p--~~~vi-~g~V~T~e~a~~l~~aGaD~I~ 220 (404)
T PRK06843 164 AHVDILVIDSAHGHSTRIIELVKKIKTKYP--NLDLI-AGNIVTKEAALDLISVGADCLK 220 (404)
T ss_pred cCCCEEEEECCCCCChhHHHHHHHHHhhCC--CCcEE-EEecCCHHHHHHHHHcCCCEEE
Confidence 35779999998874 456689999998643 66654 4444567788889999998764
No 209
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=79.41 E-value=33 Score=28.88 Aligned_cols=60 Identities=10% Similarity=0.063 Sum_probs=42.2
Q ss_pred CcceEEEEeCCHHHHHHHHHHhhcCCC--EEE-EECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCC
Q 026239 14 SQFHVLAVDDSIIDRKLIERLLKTSSY--QVT-TVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYC 86 (241)
Q Consensus 14 ~~~~ILiVdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~ 86 (241)
..-+|.-+|-++.....-+..++..|+ .|. ...+..+.|..+..... ....||+||+|..
T Consensus 103 ~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~-------------~~~~fD~iFiDad 165 (247)
T PLN02589 103 EDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGK-------------YHGTFDFIFVDAD 165 (247)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccc-------------cCCcccEEEecCC
Confidence 356899999999888888889988885 344 45666776666532100 1246899999986
No 210
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=79.23 E-value=17 Score=34.29 Aligned_cols=113 Identities=10% Similarity=0.109 Sum_probs=53.9
Q ss_pred ceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCC---cccccccEEEEeCCCCCCCH
Q 026239 16 FHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNM---HQEVGVNLVITDYCMPGMTG 92 (241)
Q Consensus 16 ~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~---~~~~~~dlIilD~~mp~~~g 92 (241)
-||+|+.-...-+. +.+.|.+.|++++.++...+..+.++.....--.+....+.. ..=.+.|.+++-..-.. +.
T Consensus 418 ~hiiI~G~G~~G~~-la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~-~~ 495 (558)
T PRK10669 418 NHALLVGYGRVGSL-LGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGY-EA 495 (558)
T ss_pred CCEEEECCChHHHH-HHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChH-HH
Confidence 45666666655554 333444456666655544444444432110000000000000 01124566666443221 22
Q ss_pred HHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccc
Q 026239 93 YDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFF 134 (241)
Q Consensus 93 ~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l 134 (241)
..++..+|+..+ +.+||+-+. +++......+.|+|..+
T Consensus 496 ~~iv~~~~~~~~--~~~iiar~~--~~~~~~~l~~~Gad~vv 533 (558)
T PRK10669 496 GEIVASAREKRP--DIEIIARAH--YDDEVAYITERGANQVV 533 (558)
T ss_pred HHHHHHHHHHCC--CCeEEEEEC--CHHHHHHHHHcCCCEEE
Confidence 345556666543 778887664 34555566789998665
No 211
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=79.19 E-value=20 Score=33.46 Aligned_cols=55 Identities=18% Similarity=0.336 Sum_probs=38.6
Q ss_pred ccccEEEEeCCCCCCC--HHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccc
Q 026239 76 VGVNLVITDYCMPGMT--GYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFF 134 (241)
Q Consensus 76 ~~~dlIilD~~mp~~~--g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l 134 (241)
..+|+|++|.. .+.+ -++++++||...+ +++||+ ..-...+....+.++|||...
T Consensus 259 ag~d~i~iD~~-~g~~~~~~~~i~~ik~~~p--~~~vi~-g~v~t~e~a~~a~~aGaD~i~ 315 (505)
T PLN02274 259 AGVDVVVLDSS-QGDSIYQLEMIKYIKKTYP--ELDVIG-GNVVTMYQAQNLIQAGVDGLR 315 (505)
T ss_pred cCCCEEEEeCC-CCCcHHHHHHHHHHHHhCC--CCcEEE-ecCCCHHHHHHHHHcCcCEEE
Confidence 34679999984 2333 3489999998643 666653 344567778899999999774
No 212
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=79.05 E-value=14 Score=33.44 Aligned_cols=69 Identities=10% Similarity=0.187 Sum_probs=43.2
Q ss_pred cccEEEEeCCCCCC----CHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhH
Q 026239 77 GVNLVITDYCMPGM----TGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKP 148 (241)
Q Consensus 77 ~~dlIilD~~mp~~----~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~ 148 (241)
.+|+|++..+.... ..+++++.+++..+ +++||+ ++......-..+++....|++.-+-....+..++.
T Consensus 33 ~aD~v~intctv~~~a~~~~~~~i~~~k~~~p--~~~vvv-gGc~a~~~~ee~~~~~~vD~vv~~e~~~~~~~ll~ 105 (414)
T TIGR01579 33 KADVYIINTCTVTAKADSKARRAIRRARRQNP--TAKIIV-TGCYAQSNPKELADLKDVDLVLGNKEKDKINKLLS 105 (414)
T ss_pred cCCEEEEeccccchHHHHHHHHHHHHHHhhCC--CcEEEE-ECCccccCHHHHhcCCCCcEEECCCCHHHHHHHHH
Confidence 36799999887654 36888888887654 566554 44332222333445555677887777666665554
No 213
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=78.84 E-value=6.9 Score=31.77 Aligned_cols=91 Identities=15% Similarity=0.214 Sum_probs=55.5
Q ss_pred HHHHhhcCCCEEEE--ECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCC-----CCHHHHHHHHHhcC
Q 026239 31 IERLLKTSSYQVTT--VDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPG-----MTGYDLLKKIKESS 103 (241)
Q Consensus 31 l~~~L~~~g~~v~~--~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~-----~~g~~ll~~ir~~~ 103 (241)
+...|+..||.+.. +..+...++.+... .||.|-+|..+.. .....+++.+....
T Consensus 137 ~~~~l~~~G~~l~ld~~g~~~~~~~~l~~~------------------~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~ 198 (240)
T cd01948 137 TLRRLRALGVRIALDDFGTGYSSLSYLKRL------------------PVDYLKIDRSFVRDIETDPEDRAIVRAIIALA 198 (240)
T ss_pred HHHHHHHCCCeEEEeCCCCcHhhHHHHHhC------------------CCCEEEECHHHHHhHhcChhhHHHHHHHHHHH
Confidence 34446678988775 44566666666443 3558888865431 23355565555433
Q ss_pred CCCCCcEEEEccCCChHHHHHHHHhccc----ccccCCCCH
Q 026239 104 SLRDIPVVIMSSENVPSRISRCLEEGAE----EFFLKPVRL 140 (241)
Q Consensus 104 ~~~~ipvIils~~~~~~~~~~~l~~Ga~----~~l~KP~~~ 140 (241)
...+++|| .++-.+.+....+.+.|++ .|+.||...
T Consensus 199 ~~~~~~vi-a~gVe~~~~~~~~~~~gi~~~QG~~~~~p~~~ 238 (240)
T cd01948 199 HSLGLKVV-AEGVETEEQLELLRELGCDYVQGYLFSRPLPA 238 (240)
T ss_pred HHCCCeEE-EEecCCHHHHHHHHHcCCCeeeeceeccCCCC
Confidence 22245554 5666777888888999984 346677654
No 214
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=78.78 E-value=9.4 Score=32.15 Aligned_cols=98 Identities=15% Similarity=0.251 Sum_probs=61.8
Q ss_pred HHHHhhcCCCEEE--EECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCC-----CCCHHHHHHHHHhcC
Q 026239 31 IERLLKTSSYQVT--TVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMP-----GMTGYDLLKKIKESS 103 (241)
Q Consensus 31 l~~~L~~~g~~v~--~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp-----~~~g~~ll~~ir~~~ 103 (241)
+-..|+..|+.+. -+.+|...+..+.... ||.|=+|-.+- +.....+++.|-...
T Consensus 141 ~l~~L~~~G~~ialDDFGtG~ssl~~L~~l~------------------~d~iKID~~fi~~i~~~~~~~~iv~~iv~la 202 (256)
T COG2200 141 LLRQLRELGVRIALDDFGTGYSSLSYLKRLP------------------PDILKIDRSFVRDLETDARDQAIVRAIVALA 202 (256)
T ss_pred HHHHHHHCCCeEEEECCCCCHHHHHHHhhCC------------------CCeEEECHHHHhhcccCcchHHHHHHHHHHH
Confidence 4455677888765 4778888999886544 45777775442 233445666654433
Q ss_pred CCCCCcEEEEccCCChHHHHHHHHhccc----ccccCCCCHHHHHHhh
Q 026239 104 SLRDIPVVIMSSENVPSRISRCLEEGAE----EFFLKPVRLSDLNKLK 147 (241)
Q Consensus 104 ~~~~ipvIils~~~~~~~~~~~l~~Ga~----~~l~KP~~~~~L~~~~ 147 (241)
..-++.||+ -+-...+....+.+.|++ .|+.||...+++....
T Consensus 203 ~~l~~~vva-EGVEt~~ql~~L~~~G~~~~QGylf~~P~~~~~~~~~~ 249 (256)
T COG2200 203 HKLGLTVVA-EGVETEEQLDLLRELGCDYLQGYLFSRPLPADALDALL 249 (256)
T ss_pred HHCCCEEEE-eecCCHHHHHHHHHcCCCeEeeccccCCCCHHHHHHHH
Confidence 222455554 344556667778899987 3478999887765543
No 215
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=78.75 E-value=8.2 Score=31.95 Aligned_cols=53 Identities=21% Similarity=0.393 Sum_probs=41.0
Q ss_pred EEEEeCCCCCC-C--HHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhccccccc
Q 026239 80 LVITDYCMPGM-T--GYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFL 135 (241)
Q Consensus 80 lIilD~~mp~~-~--g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~ 135 (241)
+|++|+.--|+ . .+++++.++... ++|||+-.+-.+.+.+.++.+.|+++.+.
T Consensus 164 ii~tdi~~dGt~~G~d~~~~~~l~~~~---~~~viasGGv~~~~Dl~~l~~~G~~gviv 219 (229)
T PF00977_consen 164 IILTDIDRDGTMQGPDLELLKQLAEAV---NIPVIASGGVRSLEDLRELKKAGIDGVIV 219 (229)
T ss_dssp EEEEETTTTTTSSS--HHHHHHHHHHH---SSEEEEESS--SHHHHHHHHHTTECEEEE
T ss_pred EEEeeccccCCcCCCCHHHHHHHHHHc---CCCEEEecCCCCHHHHHHHHHCCCcEEEE
Confidence 99999987653 3 357788887654 78999988888999999999999988764
No 216
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=78.75 E-value=11 Score=32.13 Aligned_cols=69 Identities=17% Similarity=0.182 Sum_probs=45.5
Q ss_pred EEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEccCCChHHH
Q 026239 43 TTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRI 122 (241)
Q Consensus 43 ~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~ 122 (241)
+.+.+.+++.+.+. ...|.|.+|-..|. +--++++.++... +++|+++.. .-+.+.+
T Consensus 188 Vev~t~eea~~A~~-------------------~gaD~I~ld~~~p~-~l~~~~~~~~~~~--~~i~i~AsG-GI~~~ni 244 (272)
T cd01573 188 VEVDSLEEALAAAE-------------------AGADILQLDKFSPE-ELAELVPKLRSLA--PPVLLAAAG-GINIENA 244 (272)
T ss_pred EEcCCHHHHHHHHH-------------------cCCCEEEECCCCHH-HHHHHHHHHhccC--CCceEEEEC-CCCHHHH
Confidence 46788999888763 23569999955443 2224455455432 367766554 4577888
Q ss_pred HHHHHhcccccc
Q 026239 123 SRCLEEGAEEFF 134 (241)
Q Consensus 123 ~~~l~~Ga~~~l 134 (241)
....+.|++.+.
T Consensus 245 ~~~~~~Gvd~I~ 256 (272)
T cd01573 245 AAYAAAGADILV 256 (272)
T ss_pred HHHHHcCCcEEE
Confidence 999999998773
No 217
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=78.72 E-value=14 Score=33.46 Aligned_cols=110 Identities=24% Similarity=0.266 Sum_probs=61.6
Q ss_pred cchhhhhhhh--hcCcceEEEEeC-CHHHHHHHHHHhhcCCCEEEEECC--HHHHHHHhcccCCCCCCCCCCCCCCcccc
Q 026239 2 GMAAAAAAAV--AESQFHVLAVDD-SIIDRKLIERLLKTSSYQVTTVDS--GSKALEFLGLHEDDGQSSHSVYPNMHQEV 76 (241)
Q Consensus 2 ~~~~~~~~~~--~~~~~~ILiVdd-~~~~~~~l~~~L~~~g~~v~~~~~--~~~al~~l~~~~~d~~~~~~~~~~~~~~~ 76 (241)
||++...... -++.=+||+.+| -...+..+..+|...|++|..+++ ..+.++.+.. .
T Consensus 87 GmaAI~~~~l~ll~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~------------------~ 148 (396)
T COG0626 87 GMAAISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKE------------------P 148 (396)
T ss_pred cHHHHHHHHHHhcCCCCEEEecCCccchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcc------------------c
Confidence 5554444322 244678888888 456778888899999999998774 3345545432 1
Q ss_pred cccEEEEeCCC-CCCC--HHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhccccc
Q 026239 77 GVNLVITDYCM-PGMT--GYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEF 133 (241)
Q Consensus 77 ~~dlIilD~~m-p~~~--g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~ 133 (241)
+.++|+++.-- |-+. -+..+.++-... . .++++=..-......+.++.|||=+
T Consensus 149 ~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~---g-~~vvVDNTfatP~~q~PL~~GaDIV 204 (396)
T COG0626 149 NTKLVFLETPSNPLLEVPDIPAIARLAKAY---G-ALVVVDNTFATPVLQRPLELGADIV 204 (396)
T ss_pred CceEEEEeCCCCcccccccHHHHHHHHHhc---C-CEEEEECCcccccccChhhcCCCEE
Confidence 24588887532 2222 222333333221 2 3444433333445566777877644
No 218
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=78.63 E-value=5.1 Score=35.20 Aligned_cols=54 Identities=13% Similarity=0.168 Sum_probs=40.2
Q ss_pred ccEEEEeCCCCCC-CHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccc
Q 026239 78 VNLVITDYCMPGM-TGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFF 134 (241)
Q Consensus 78 ~dlIilD~~mp~~-~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l 134 (241)
+|+|.+|...+.. .-.+++++||+..+ ++|||+= .-.+.+.+..+.++|++...
T Consensus 112 ~d~i~iD~a~gh~~~~~e~I~~ir~~~p--~~~vi~g-~V~t~e~a~~l~~aGad~i~ 166 (326)
T PRK05458 112 PEYITIDIAHGHSDSVINMIQHIKKHLP--ETFVIAG-NVGTPEAVRELENAGADATK 166 (326)
T ss_pred CCEEEEECCCCchHHHHHHHHHHHhhCC--CCeEEEE-ecCCHHHHHHHHHcCcCEEE
Confidence 4799999998754 45688999998643 6776652 22367788899999998864
No 219
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=78.56 E-value=26 Score=32.51 Aligned_cols=55 Identities=18% Similarity=0.310 Sum_probs=41.1
Q ss_pred ccccEEEEeCCCCC-CCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhccccc
Q 026239 76 VGVNLVITDYCMPG-MTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEF 133 (241)
Q Consensus 76 ~~~dlIilD~~mp~-~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~ 133 (241)
..+|+|++|..... ..-.+++++||... +++|||+ ..-.+.+.+..+.++||+.+
T Consensus 236 aGVd~i~~D~a~g~~~~~~~~i~~i~~~~--~~~~vi~-g~~~t~~~~~~l~~~G~d~i 291 (475)
T TIGR01303 236 AGVDVLVIDTAHGHQVKMISAIKAVRALD--LGVPIVA-GNVVSAEGVRDLLEAGANII 291 (475)
T ss_pred hCCCEEEEeCCCCCcHHHHHHHHHHHHHC--CCCeEEE-eccCCHHHHHHHHHhCCCEE
Confidence 45779999998753 34567899999864 3788876 33556778888999999765
No 220
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=78.22 E-value=9.2 Score=33.11 Aligned_cols=66 Identities=12% Similarity=0.181 Sum_probs=43.7
Q ss_pred EEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEccCCChHH
Q 026239 42 VTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSR 121 (241)
Q Consensus 42 v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~ 121 (241)
.+.+++.+++.+++.. .+|+|.+|-.-| -++-+.++... .-..|..|+.-+.+.
T Consensus 212 eVEv~sleea~ea~~~-------------------gaDiI~LDn~s~----e~~~~av~~~~---~~~~ieaSGGI~~~n 265 (296)
T PRK09016 212 EVEVENLDELDQALKA-------------------GADIIMLDNFTT----EQMREAVKRTN---GRALLEVSGNVTLET 265 (296)
T ss_pred EEEeCCHHHHHHHHHc-------------------CCCEEEeCCCCh----HHHHHHHHhhc---CCeEEEEECCCCHHH
Confidence 3478899999998853 356999995433 23333333221 223566777888899
Q ss_pred HHHHHHhccccc
Q 026239 122 ISRCLEEGAEEF 133 (241)
Q Consensus 122 ~~~~l~~Ga~~~ 133 (241)
+.+..+.|+|-+
T Consensus 266 i~~yA~tGVD~I 277 (296)
T PRK09016 266 LREFAETGVDFI 277 (296)
T ss_pred HHHHHhcCCCEE
Confidence 999999998744
No 221
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=78.19 E-value=13 Score=30.86 Aligned_cols=71 Identities=18% Similarity=0.221 Sum_probs=50.3
Q ss_pred ECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCC---CCHHHHHHHHHhcCCCCCCcEEEEccCCChHH
Q 026239 45 VDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPG---MTGYDLLKKIKESSSLRDIPVVIMSSENVPSR 121 (241)
Q Consensus 45 ~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~---~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~ 121 (241)
..+..+..+.+.....+ .++++|+.--+ ..-+++++.|++.. .+||++-.+-.+.+.
T Consensus 26 ~~d~~~~a~~~~~~G~~-----------------~i~i~d~~~~~~~~~~~~~~i~~i~~~~---~~pv~~~GGI~s~~d 85 (243)
T cd04731 26 AGDPVELAKRYNEQGAD-----------------ELVFLDITASSEGRETMLDVVERVAEEV---FIPLTVGGGIRSLED 85 (243)
T ss_pred CCCHHHHHHHHHHCCCC-----------------EEEEEcCCcccccCcccHHHHHHHHHhC---CCCEEEeCCCCCHHH
Confidence 34666666666544333 28888887432 22367888888753 689999988888999
Q ss_pred HHHHHHhccccccc
Q 026239 122 ISRCLEEGAEEFFL 135 (241)
Q Consensus 122 ~~~~l~~Ga~~~l~ 135 (241)
+..++..|++..+.
T Consensus 86 ~~~~l~~G~~~v~i 99 (243)
T cd04731 86 ARRLLRAGADKVSI 99 (243)
T ss_pred HHHHHHcCCceEEE
Confidence 99999999887654
No 222
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=77.70 E-value=17 Score=29.57 Aligned_cols=56 Identities=11% Similarity=0.246 Sum_probs=29.7
Q ss_pred eCCCCCCCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHH
Q 026239 84 DYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDL 143 (241)
Q Consensus 84 D~~mp~~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L 143 (241)
.+.|..-+.++.++.+++..+ + -+|=...--+.+....+.++||+ |+.-|.-..++
T Consensus 34 Eit~~tp~a~~~I~~l~~~~~--~-~~vGAGTVl~~e~a~~ai~aGA~-FivSP~~~~~v 89 (201)
T PRK06015 34 EITLRTPAALDAIRAVAAEVE--E-AIVGAGTILNAKQFEDAAKAGSR-FIVSPGTTQEL 89 (201)
T ss_pred EEeCCCccHHHHHHHHHHHCC--C-CEEeeEeCcCHHHHHHHHHcCCC-EEECCCCCHHH
Confidence 334444456667777765432 2 12222233456667777777774 66666544444
No 223
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=77.46 E-value=11 Score=29.11 Aligned_cols=89 Identities=16% Similarity=0.125 Sum_probs=49.7
Q ss_pred CcceEEEEeCCHHHHHHHHHHhhcCCCEEEE--E------------CCHHHHHHHhcccCCCCCCCCCCCCCCccccccc
Q 026239 14 SQFHVLAVDDSIIDRKLIERLLKTSSYQVTT--V------------DSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVN 79 (241)
Q Consensus 14 ~~~~ILiVdd~~~~~~~l~~~L~~~g~~v~~--~------------~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~d 79 (241)
.+.++||+..-....+.+.+.|+..++.+.. + -...-...++.. |. .-.+||
T Consensus 32 ~~~rvLvL~PTRvva~em~~aL~~~~~~~~t~~~~~~~~g~~~i~vMc~at~~~~~~~--p~------------~~~~yd 97 (148)
T PF07652_consen 32 RRLRVLVLAPTRVVAEEMYEALKGLPVRFHTNARMRTHFGSSIIDVMCHATYGHFLLN--PC------------RLKNYD 97 (148)
T ss_dssp TT--EEEEESSHHHHHHHHHHTTTSSEEEESTTSS----SSSSEEEEEHHHHHHHHHT--SS------------CTTS-S
T ss_pred ccCeEEEecccHHHHHHHHHHHhcCCcccCceeeeccccCCCcccccccHHHHHHhcC--cc------------cccCcc
Confidence 5789999999999999999999866533321 1 011223333322 21 345799
Q ss_pred EEEEeCCCC-CCCHHHHHHHHHhcCCCCCCcEEEEccC
Q 026239 80 LVITDYCMP-GMTGYDLLKKIKESSSLRDIPVVIMSSE 116 (241)
Q Consensus 80 lIilD~~mp-~~~g~~ll~~ir~~~~~~~ipvIils~~ 116 (241)
+||+|-+-- |-..+.+.-.|+.........+|+||+-
T Consensus 98 ~II~DEcH~~Dp~sIA~rg~l~~~~~~g~~~~i~mTAT 135 (148)
T PF07652_consen 98 VIIMDECHFTDPTSIAARGYLRELAESGEAKVIFMTAT 135 (148)
T ss_dssp EEEECTTT--SHHHHHHHHHHHHHHHTTS-EEEEEESS
T ss_pred EEEEeccccCCHHHHhhheeHHHhhhccCeeEEEEeCC
Confidence 999997654 2233444444443332234678999874
No 224
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=77.43 E-value=33 Score=27.95 Aligned_cols=73 Identities=21% Similarity=0.269 Sum_probs=44.7
Q ss_pred cccEEEEeCCCCC---------CCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHH---HHHhcccccccCCC-CHHHH
Q 026239 77 GVNLVITDYCMPG---------MTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISR---CLEEGAEEFFLKPV-RLSDL 143 (241)
Q Consensus 77 ~~dlIilD~~mp~---------~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~---~l~~Ga~~~l~KP~-~~~~L 143 (241)
.+|.|++|+.-.. .+-.+++..++.... ....+++=....+...+.+ +++.|+++++.--+ +.+++
T Consensus 21 g~D~vilDlEd~~~~~~K~~ar~~~~~~~~~~~~~~~-~~~~~~VRvn~~~~~~~~~Dl~~l~~g~~gI~lP~ves~~~~ 99 (221)
T PF03328_consen 21 GADFVILDLEDGVPPDEKDEAREDLAEALRSIRAARA-AGSEIIVRVNSLDSPHIERDLEALDAGADGIVLPKVESAEDA 99 (221)
T ss_dssp CSSEEEEESSTTSSGGGHHHHHHHHHHHHHHHHHHTT-SSSEEEEE-SSTTCHHHHHHHHHHHTTSSEEEETT--SHHHH
T ss_pred CCCEEEEeCcccCCcccchhhHHHHHHHHHhhccccc-ccccceecCCCCCcchhhhhhhhcccCCCeeeccccCcHHHH
Confidence 4669999998654 344456666665222 1345555555555556666 99999998865444 66777
Q ss_pred HHhhHHH
Q 026239 144 NKLKPHL 150 (241)
Q Consensus 144 ~~~~~~l 150 (241)
..+...+
T Consensus 100 ~~~~~~~ 106 (221)
T PF03328_consen 100 RQAVAAL 106 (221)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655444
No 225
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=77.42 E-value=43 Score=28.68 Aligned_cols=93 Identities=13% Similarity=0.198 Sum_probs=53.6
Q ss_pred EEEEeCCHHHHHHHHHHh----hcCCC--EE-EEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCC
Q 026239 18 VLAVDDSIIDRKLIERLL----KTSSY--QV-TTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGM 90 (241)
Q Consensus 18 ILiVdd~~~~~~~l~~~L----~~~g~--~v-~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~ 90 (241)
|||-|.+......+...+ ...++ .+ +.+++.++|++++.. .+|+|.+|- |.-.
T Consensus 155 vlikdnHi~~~g~i~~~v~~~k~~~p~~~~I~VEv~tleea~~A~~~-------------------GaDiI~LDn-~~~e 214 (273)
T PRK05848 155 LMLKDTHLKHIKDLKEFIQHARKNIPFTAKIEIECESLEEAKNAMNA-------------------GADIVMCDN-MSVE 214 (273)
T ss_pred hCcCHHHHHHHCcHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHc-------------------CCCEEEECC-CCHH
Confidence 455555544333333333 33443 23 368899999998842 367999874 2111
Q ss_pred CHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhccccc
Q 026239 91 TGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEF 133 (241)
Q Consensus 91 ~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~ 133 (241)
+--++++.++.. .++ ..|..|+.-+++.+..+.+.|+|.+
T Consensus 215 ~l~~~v~~~~~~--~~~-~~ieAsGgIt~~ni~~ya~~GvD~I 254 (273)
T PRK05848 215 EIKEVVAYRNAN--YPH-VLLEASGNITLENINAYAKSGVDAI 254 (273)
T ss_pred HHHHHHHHhhcc--CCC-eEEEEECCCCHHHHHHHHHcCCCEE
Confidence 112222222221 123 3566777789999999999999765
No 226
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=77.35 E-value=37 Score=30.97 Aligned_cols=112 Identities=12% Similarity=0.130 Sum_probs=55.1
Q ss_pred cCcceEEEEeCCHHH---HHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCC
Q 026239 13 ESQFHVLAVDDSIID---RKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPG 89 (241)
Q Consensus 13 ~~~~~ILiVdd~~~~---~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~ 89 (241)
....+|++++-|..- ..-+..+-...|+.+..+.+..+..+.+.... ....+|+||+|.-=-.
T Consensus 267 ~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk--------------~~~~~DvVLIDTaGRs 332 (436)
T PRK11889 267 GKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK--------------EEARVDYILIDTAGKN 332 (436)
T ss_pred HcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHH--------------hccCCCEEEEeCcccc
Confidence 345688888877542 23344444456777776766666555553221 1124789999964221
Q ss_pred CCHHHHHHHHHhcC--CCCCCcEEEEccCCChHH---HHHHH-HhcccccccCCC
Q 026239 90 MTGYDLLKKIKESS--SLRDIPVVIMSSENVPSR---ISRCL-EEGAEEFFLKPV 138 (241)
Q Consensus 90 ~~g~~ll~~ir~~~--~~~~ipvIils~~~~~~~---~~~~l-~~Ga~~~l~KP~ 138 (241)
....+.+..++... ..++-.++++++...... +.+.+ ..|.+++|.--+
T Consensus 333 ~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~F~~~~idglI~TKL 387 (436)
T PRK11889 333 YRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKF 387 (436)
T ss_pred CcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHHhcCCCCCEEEEEcc
Confidence 12233333333211 112334566665433322 22232 346677654333
No 227
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=77.33 E-value=37 Score=29.79 Aligned_cols=29 Identities=24% Similarity=0.461 Sum_probs=24.7
Q ss_pred CCcEEEEccCCChHHHHHHHHhccccccc
Q 026239 107 DIPVVIMSSENVPSRISRCLEEGAEEFFL 135 (241)
Q Consensus 107 ~ipvIils~~~~~~~~~~~l~~Ga~~~l~ 135 (241)
++|||.-.+-.+...+.+++.+||+.+..
T Consensus 197 ~vpVIA~GGI~~~~di~kAla~GA~~Vmi 225 (325)
T cd00381 197 GVPVIADGGIRTSGDIVKALAAGADAVML 225 (325)
T ss_pred CCcEEecCCCCCHHHHHHHHHcCCCEEEe
Confidence 68998777777889999999999998755
No 228
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=77.23 E-value=26 Score=27.07 Aligned_cols=56 Identities=27% Similarity=0.249 Sum_probs=39.2
Q ss_pred ccccEEEEeCCCCCCCH-------HHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccc
Q 026239 76 VGVNLVITDYCMPGMTG-------YDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFF 134 (241)
Q Consensus 76 ~~~dlIilD~~mp~~~g-------~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l 134 (241)
..+|.|.++...++..+ ...+..++.. ..+||++..+-...+.+..+++.||+.+.
T Consensus 135 ~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~pi~~~GGi~~~~~~~~~~~~Gad~v~ 197 (200)
T cd04722 135 AGVDEVGLGNGGGGGGGRDAVPIADLLLILAKRG---SKVPVIAGGGINDPEDAAEALALGADGVI 197 (200)
T ss_pred cCCCEEEEcCCcCCCCCccCchhHHHHHHHHHhc---CCCCEEEECCCCCHHHHHHHHHhCCCEEE
Confidence 34678888777665332 2344444443 37899988887777888999999998775
No 229
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=77.21 E-value=7.9 Score=31.94 Aligned_cols=54 Identities=22% Similarity=0.286 Sum_probs=43.5
Q ss_pred cEEEEeCCCCCC-C--HHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhccccccc
Q 026239 79 NLVITDYCMPGM-T--GYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFL 135 (241)
Q Consensus 79 dlIilD~~mp~~-~--g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~ 135 (241)
.+|++|+.--|+ . .+++++.+.+.. ++|||+-.+-.+.+.+..+.+.||++.+.
T Consensus 156 ~ii~tdI~~dGt~~G~d~eli~~i~~~~---~~pvia~GGi~s~ed~~~l~~~Ga~~viv 212 (221)
T TIGR00734 156 GLIVLDIHSVGTMKGPNLELLTKTLELS---EHPVMLGGGISGVEDLELLKEMGVSAVLV 212 (221)
T ss_pred EEEEEECCccccCCCCCHHHHHHHHhhC---CCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 489999987553 3 368899998753 68999888888899998889999998765
No 230
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=77.19 E-value=13 Score=28.35 Aligned_cols=53 Identities=21% Similarity=0.160 Sum_probs=42.8
Q ss_pred CcceEEEEeCCHHHHHHHHHHhhcCCCEEEEEC----CHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCC
Q 026239 14 SQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVD----SGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPG 89 (241)
Q Consensus 14 ~~~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~----~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~ 89 (241)
...+|+|+..+....+-+..+|...|+.|+.++ +..+++.. .|+|++-..-+.
T Consensus 27 ~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~~-----------------------ADIVvsAtg~~~ 83 (140)
T cd05212 27 DGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVHD-----------------------ADVVVVGSPKPE 83 (140)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHhh-----------------------CCEEEEecCCCC
Confidence 467999999999999999999999999999887 44444332 369999887664
No 231
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=76.91 E-value=33 Score=31.28 Aligned_cols=105 Identities=10% Similarity=0.016 Sum_probs=52.9
Q ss_pred CcceEEEEeCCHHH---HHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCC-C
Q 026239 14 SQFHVLAVDDSIID---RKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMP-G 89 (241)
Q Consensus 14 ~~~~ILiVdd~~~~---~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp-~ 89 (241)
...+|.+|+-|+.- ...+..+-...|+.+..+.+..+....+... ..+|+||+|.--- .
T Consensus 250 ~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~-----------------~~~DlVlIDt~G~~~ 312 (424)
T PRK05703 250 GKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL-----------------RDCDVILIDTAGRSQ 312 (424)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh-----------------CCCCEEEEeCCCCCC
Confidence 45789999877632 1223333344566666666666655555421 2367999996311 1
Q ss_pred --CCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHH----Hhccccccc
Q 026239 90 --MTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCL----EEGAEEFFL 135 (241)
Q Consensus 90 --~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l----~~Ga~~~l~ 135 (241)
....+.+..+-.....+.-.++++++......+..+. ..|.+.+|.
T Consensus 313 ~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~~~vI~ 364 (424)
T PRK05703 313 RDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFSRLPLDGLIF 364 (424)
T ss_pred CCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhCCCCCCEEEE
Confidence 1122334333331111223366677655555544433 235545543
No 232
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=76.82 E-value=12 Score=30.39 Aligned_cols=59 Identities=20% Similarity=0.413 Sum_probs=35.1
Q ss_pred ccEEEEeCCCCCCCH-------HHHHHHHHhcCCCCCC-cEEEEccCCChHHHHHHHHhcccccccC
Q 026239 78 VNLVITDYCMPGMTG-------YDLLKKIKESSSLRDI-PVVIMSSENVPSRISRCLEEGAEEFFLK 136 (241)
Q Consensus 78 ~dlIilD~~mp~~~g-------~~ll~~ir~~~~~~~i-pvIils~~~~~~~~~~~l~~Ga~~~l~K 136 (241)
+|.|+++...|+.+| ++.++.++.......+ ++|++.+.-..+.+..+.+.|++.++.-
T Consensus 132 ~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~~nv~~l~~~GaD~vvvg 198 (220)
T PRK05581 132 LDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGINADNIKECAEAGADVFVAG 198 (220)
T ss_pred CCEEEEEEECCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHcCCCEEEEC
Confidence 566766655465544 3445555433211123 4555666667788888889999977543
No 233
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=76.78 E-value=23 Score=29.29 Aligned_cols=61 Identities=18% Similarity=0.237 Sum_probs=43.7
Q ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccc------cCCCCHHHH
Q 026239 80 LVITDYCMP---GMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFF------LKPVRLSDL 143 (241)
Q Consensus 80 lIilD~~mp---~~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l------~KP~~~~~L 143 (241)
++++|.... ....+++++.+.+.. ++||++-.+-.+.+.+..++..||++++ ..|+..+++
T Consensus 166 i~~~~~~~~g~~~g~~~~~i~~i~~~~---~iPvia~GGI~~~~di~~~~~~Ga~gv~vgsa~~~~~~~~~~~ 235 (241)
T PRK13585 166 ILFTNVDVEGLLEGVNTEPVKELVDSV---DIPVIASGGVTTLDDLRALKEAGAAGVVVGSALYKGKFTLEEA 235 (241)
T ss_pred EEEEeecCCCCcCCCCHHHHHHHHHhC---CCCEEEeCCCCCHHHHHHHHHcCCCEEEEEHHHhcCCcCHHHH
Confidence 666666322 223578889998753 6899999888888888889999998764 456655554
No 234
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=76.70 E-value=35 Score=26.97 Aligned_cols=83 Identities=18% Similarity=0.248 Sum_probs=57.2
Q ss_pred EEEEeCCHHHHHHHHHHhhcCCCEEEEEC-------CHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeC-CCCC
Q 026239 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVD-------SGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDY-CMPG 89 (241)
Q Consensus 18 ILiVdd~~~~~~~l~~~L~~~g~~v~~~~-------~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~-~mp~ 89 (241)
|||=|.|...++.++..-+..|.++...+ +|.+.++++.....| |=+|.+|- ...+
T Consensus 3 IlvTDGD~~A~ravE~aa~~iGgRCIS~S~GNPT~lsG~elV~lIk~a~~D----------------PV~VMfDD~G~~g 66 (180)
T PF14097_consen 3 ILVTDGDEYAKRAVEIAAKNIGGRCISQSAGNPTPLSGEELVELIKQAPHD----------------PVLVMFDDKGFIG 66 (180)
T ss_pred EEEECChHHHHHHHHHHHHHhCcEEEeccCCCCCcCCHHHHHHHHHhCCCC----------------CEEEEEeCCCCCC
Confidence 56777888888889888888898888654 689999999876555 33555554 3444
Q ss_pred -CCHHHHHHHHHhcCCCCCCcEEEEccC
Q 026239 90 -MTGYDLLKKIKESSSLRDIPVVIMSSE 116 (241)
Q Consensus 90 -~~g~~ll~~ir~~~~~~~ipvIils~~ 116 (241)
..|-..++.+-.+....-+-+|.+++.
T Consensus 67 ~G~GE~Al~~v~~h~~IeVLG~iAVASn 94 (180)
T PF14097_consen 67 EGPGEQALEYVANHPDIEVLGAIAVASN 94 (180)
T ss_pred CCccHHHHHHHHcCCCceEEEEEEEEec
Confidence 457888888887653333445555554
No 235
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=76.65 E-value=26 Score=32.01 Aligned_cols=101 Identities=15% Similarity=0.091 Sum_probs=51.0
Q ss_pred cceEEEEeCCHHH---HHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCC-
Q 026239 15 QFHVLAVDDSIID---RKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGM- 90 (241)
Q Consensus 15 ~~~ILiVdd~~~~---~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~- 90 (241)
..+|++++-|..- ...+.......|..+..+.+..++.+.+.. ..+|+||+|. +|.
T Consensus 252 G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~------------------~~~D~VLIDT--aGr~ 311 (432)
T PRK12724 252 GKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLAR------------------DGSELILIDT--AGYS 311 (432)
T ss_pred CCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHh------------------CCCCEEEEeC--CCCC
Confidence 4678888776521 122333333445555555555555655532 2467999996 332
Q ss_pred ----CHHHHHHHHHhcC-C-CCCCcEEEEccCCChHHHHHHHH----hccccccc
Q 026239 91 ----TGYDLLKKIKESS-S-LRDIPVVIMSSENVPSRISRCLE----EGAEEFFL 135 (241)
Q Consensus 91 ----~g~~ll~~ir~~~-~-~~~ipvIils~~~~~~~~~~~l~----~Ga~~~l~ 135 (241)
+.++-+..+.... . .+.-.++++++......+..+++ .|.+++|.
T Consensus 312 ~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glIl 366 (432)
T PRK12724 312 HRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILL 366 (432)
T ss_pred ccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEEE
Confidence 2222233332211 1 12345677777666655555443 45555543
No 236
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=76.10 E-value=27 Score=28.62 Aligned_cols=100 Identities=18% Similarity=0.289 Sum_probs=62.9
Q ss_pred cCcceEEEEeCCHH-----HHHHHHHHhhcCCCEEE-EECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCC
Q 026239 13 ESQFHVLAVDDSII-----DRKLIERLLKTSSYQVT-TVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYC 86 (241)
Q Consensus 13 ~~~~~ILiVdd~~~-----~~~~l~~~L~~~g~~v~-~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~ 86 (241)
+....|+.+|--.- ....+....+..|.-.. -+++.+|++..... .+| |+...
T Consensus 96 ~~Ga~IIA~DaT~R~RP~~~~~~~i~~~k~~~~l~MAD~St~ee~l~a~~~-------------------G~D--~IGTT 154 (229)
T COG3010 96 EAGADIIAFDATDRPRPDGDLEELIARIKYPGQLAMADCSTFEEGLNAHKL-------------------GFD--IIGTT 154 (229)
T ss_pred HCCCcEEEeecccCCCCcchHHHHHHHhhcCCcEEEeccCCHHHHHHHHHc-------------------CCc--EEecc
Confidence 34566777764321 22222222333343222 46678888776542 244 34444
Q ss_pred CCCC---------CHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCC
Q 026239 87 MPGM---------TGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137 (241)
Q Consensus 87 mp~~---------~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP 137 (241)
|.|- .-+++++.+.+. .++||.=...+.++....+++.||+..+.-.
T Consensus 155 LsGYT~~~~~~~~pDf~lvk~l~~~----~~~vIAEGr~~tP~~Ak~a~~~Ga~aVvVGs 210 (229)
T COG3010 155 LSGYTGYTEKPTEPDFQLVKQLSDA----GCRVIAEGRYNTPEQAKKAIEIGADAVVVGS 210 (229)
T ss_pred cccccCCCCCCCCCcHHHHHHHHhC----CCeEEeeCCCCCHHHHHHHHHhCCeEEEECc
Confidence 5443 348899999873 6799988889999999999999999886544
No 237
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=75.43 E-value=16 Score=29.79 Aligned_cols=66 Identities=17% Similarity=0.175 Sum_probs=42.8
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhccccccc--CCCCHHHHHHhhH
Q 026239 80 LVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFL--KPVRLSDLNKLKP 148 (241)
Q Consensus 80 lIilD~~mp~~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~--KP~~~~~L~~~~~ 148 (241)
|-++|...--...++.++.+++.. ++||++...-.+...+..++++||+.+++ .-+..+.+..++.
T Consensus 48 l~v~~~~~~~~g~~~~~~~i~~~v---~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~ 115 (217)
T cd00331 48 ISVLTEPKYFQGSLEDLRAVREAV---SLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLKELYE 115 (217)
T ss_pred EEEEeCccccCCCHHHHHHHHHhc---CCCEEECCeecCHHHHHHHHHcCCCEEEEeeccCCHHHHHHHHH
Confidence 344444444445678888888753 79999876555566788899999999873 2233344544443
No 238
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=75.23 E-value=49 Score=28.11 Aligned_cols=43 Identities=12% Similarity=0.193 Sum_probs=32.8
Q ss_pred HHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCC
Q 026239 93 YDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPV 138 (241)
Q Consensus 93 ~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~ 138 (241)
.++++++|+. .+.||++=-+-.+++.+..+.+.|||+++.-..
T Consensus 191 ~~~i~~ir~~---t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGSa 233 (263)
T CHL00200 191 KKLIETIKKM---TNKPIILGFGISTSEQIKQIKGWNINGIVIGSA 233 (263)
T ss_pred HHHHHHHHHh---cCCCEEEECCcCCHHHHHHHHhcCCCEEEECHH
Confidence 3567777763 378999855566688888999999999988663
No 239
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=74.86 E-value=39 Score=31.02 Aligned_cols=43 Identities=21% Similarity=0.334 Sum_probs=30.2
Q ss_pred HHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhccccccc
Q 026239 93 YDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFL 135 (241)
Q Consensus 93 ~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~ 135 (241)
+.++..+.......++|||.-.+-..+..+..|+.+||+.+..
T Consensus 313 ~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~GA~~V~~ 355 (450)
T TIGR01302 313 ITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADAVML 355 (450)
T ss_pred HHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 3444444332211368998888888999999999999987644
No 240
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=74.53 E-value=46 Score=28.34 Aligned_cols=83 Identities=8% Similarity=0.108 Sum_probs=48.5
Q ss_pred EEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCC--CCHHHH
Q 026239 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPG--MTGYDL 95 (241)
Q Consensus 18 ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~--~~g~~l 95 (241)
|+-+..+......+...|...|+.+....+............++ |++|+ +...| .+-.++
T Consensus 145 i~G~G~S~~~A~~l~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~-----------------Dl~I~-iS~sG~t~~~~~~ 206 (292)
T PRK11337 145 LYGAGGSAAIARDVQHKFLRIGVRCQAYDDAHIMLMSAALLQEG-----------------DVVLV-VSHSGRTSDVIEA 206 (292)
T ss_pred EEEecHHHHHHHHHHHHHhhCCCeEEEcCCHHHHHHHHhcCCCC-----------------CEEEE-EeCCCCCHHHHHH
Confidence 44445555566666666767888887777665443332222221 24433 34444 345667
Q ss_pred HHHHHhcCCCCCCcEEEEccCCChHHH
Q 026239 96 LKKIKESSSLRDIPVVIMSSENVPSRI 122 (241)
Q Consensus 96 l~~ir~~~~~~~ipvIils~~~~~~~~ 122 (241)
++..++. .++||.+|+.......
T Consensus 207 ~~~ak~~----g~~ii~IT~~~~s~la 229 (292)
T PRK11337 207 VELAKKN----GAKIICITNSYHSPIA 229 (292)
T ss_pred HHHHHHC----CCeEEEEeCCCCChhH
Confidence 7777764 6799999997765443
No 241
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=74.50 E-value=29 Score=28.48 Aligned_cols=59 Identities=22% Similarity=0.303 Sum_probs=40.4
Q ss_pred ccccccEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccC
Q 026239 74 QEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLK 136 (241)
Q Consensus 74 ~~~~~dlIilD~~mp~~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~K 136 (241)
.+.++|.||.----|...|-.-.+.+.+.+ ++|.|+++...... +.+.++.-..+||+-
T Consensus 57 e~~~pDfvi~isPNpaaPGP~kARE~l~~s---~~PaiiigDaPg~~-vkdeleeqGlGYIiv 115 (277)
T COG1927 57 EEFNPDFVIYISPNPAAPGPKKAREILSDS---DVPAIIIGDAPGLK-VKDELEEQGLGYIIV 115 (277)
T ss_pred HhcCCCEEEEeCCCCCCCCchHHHHHHhhc---CCCEEEecCCccch-hHHHHHhcCCeEEEe
Confidence 345567888877777788888888877643 89999998866443 445555555566543
No 242
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=74.47 E-value=17 Score=30.67 Aligned_cols=57 Identities=16% Similarity=0.292 Sum_probs=42.4
Q ss_pred EEEEeCCCCCC-C--HHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHH-Hhccccccc-CCCC
Q 026239 80 LVITDYCMPGM-T--GYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCL-EEGAEEFFL-KPVR 139 (241)
Q Consensus 80 lIilD~~mp~~-~--g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l-~~Ga~~~l~-KP~~ 139 (241)
++++|+.--++ . .+++++.+++.. ++|||+-.+-.+.+.+..++ ..|+++.+. +.+.
T Consensus 169 ii~~~i~~~G~~~G~d~~~i~~~~~~~---~ipvIasGGv~s~eD~~~l~~~~GvdgVivg~a~~ 230 (258)
T PRK01033 169 ILLNSIDRDGTMKGYDLELLKSFRNAL---KIPLIALGGAGSLDDIVEAILNLGADAAAAGSLFV 230 (258)
T ss_pred EEEEccCCCCCcCCCCHHHHHHHHhhC---CCCEEEeCCCCCHHHHHHHHHHCCCCEEEEcceee
Confidence 88887764432 2 367788888753 79999988888999999998 799987643 4443
No 243
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=74.25 E-value=43 Score=28.85 Aligned_cols=59 Identities=15% Similarity=0.208 Sum_probs=42.1
Q ss_pred ccccEEEEeCCC-----CCCCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhccccccc
Q 026239 76 VGVNLVITDYCM-----PGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFL 135 (241)
Q Consensus 76 ~~~dlIilD~~m-----p~~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~ 135 (241)
..+|.|++.-+- .+...++++..++.... .++|||.-.+-.+...+.+++.+||+.+..
T Consensus 192 ~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~-~~ipvia~GGI~~~~d~~kal~lGAd~V~i 255 (299)
T cd02809 192 AGADGIVVSNHGGRQLDGAPATIDALPEIVAAVG-GRIEVLLDGGIRRGTDVLKALALGADAVLI 255 (299)
T ss_pred CCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhc-CCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 346677664321 13346778888876432 269999988888999999999999998743
No 244
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=74.13 E-value=48 Score=28.28 Aligned_cols=86 Identities=10% Similarity=0.050 Sum_probs=56.5
Q ss_pred ceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCccccccc-EEEEeCCCCCCCHHH
Q 026239 16 FHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVN-LVITDYCMPGMTGYD 94 (241)
Q Consensus 16 ~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~d-lIilD~~mp~~~g~~ 94 (241)
+-++-+.-+......+...|...|..+...++....+..+....++ | +|++.+.=-...-.+
T Consensus 133 I~~~G~g~S~~vA~~~~~~l~~ig~~~~~~~d~~~~~~~~~~~~~~-----------------Dv~i~iS~sG~t~e~i~ 195 (281)
T COG1737 133 IYFFGLGSSGLVASDLAYKLMRIGLNVVALSDTHGQLMQLALLTPG-----------------DVVIAISFSGYTREIVE 195 (281)
T ss_pred EEEEEechhHHHHHHHHHHHHHcCCceeEecchHHHHHHHHhCCCC-----------------CEEEEEeCCCCcHHHHH
Confidence 4455566777888888888889999999887776666545444333 1 333333322234567
Q ss_pred HHHHHHhcCCCCCCcEEEEccCCChHHH
Q 026239 95 LLKKIKESSSLRDIPVVIMSSENVPSRI 122 (241)
Q Consensus 95 ll~~ir~~~~~~~ipvIils~~~~~~~~ 122 (241)
+++..++. .++||.+|+.......
T Consensus 196 ~a~~ak~~----ga~vIaiT~~~~spla 219 (281)
T COG1737 196 AAELAKER----GAKVIAITDSADSPLA 219 (281)
T ss_pred HHHHHHHC----CCcEEEEcCCCCCchh
Confidence 77777764 5799999997555443
No 245
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=74.08 E-value=22 Score=34.58 Aligned_cols=98 Identities=14% Similarity=0.135 Sum_probs=64.2
Q ss_pred HHHHhhcCCCEEEE--ECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCC-----CCCHHHHHHHHHhcC
Q 026239 31 IERLLKTSSYQVTT--VDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMP-----GMTGYDLLKKIKESS 103 (241)
Q Consensus 31 l~~~L~~~g~~v~~--~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp-----~~~g~~ll~~ir~~~ 103 (241)
.-..|+..||.+.. +.++...+..+... ++|.|-+|-.+- +.....+++.|....
T Consensus 683 ~l~~l~~~G~~i~ld~fg~~~~~~~~l~~l------------------~~d~iKid~~~~~~~~~~~~~~~~~~~~~~~~ 744 (799)
T PRK11359 683 RIQILRDMGVGLSVDDFGTGFSGLSRLVSL------------------PVTEIKIDKSFVDRCLTEKRILALLEAITSIG 744 (799)
T ss_pred HHHHHHHCCCEEEEECCCCchhhHHHHhhC------------------CCCEEEECHHHHhhcccChhHHHHHHHHHHHH
Confidence 33457788998865 56777777777543 455888886542 223445666665433
Q ss_pred CCCCCcEEEEccCCChHHHHHHHHhccc----ccccCCCCHHHHHHhh
Q 026239 104 SLRDIPVVIMSSENVPSRISRCLEEGAE----EFFLKPVRLSDLNKLK 147 (241)
Q Consensus 104 ~~~~ipvIils~~~~~~~~~~~l~~Ga~----~~l~KP~~~~~L~~~~ 147 (241)
...++.|| ..+-.+.+....+.+.|++ .|+.||...++|...+
T Consensus 745 ~~~~i~vi-a~gVe~~~~~~~l~~~g~~~~QG~~~~~p~~~~~~~~~~ 791 (799)
T PRK11359 745 QSLNLTVV-AEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWM 791 (799)
T ss_pred HHCCCeEE-EEcCCCHHHHHHHHhcCCCEEeeCeecCCCCHHHHHHHH
Confidence 22255554 5566777888888899997 3588999999986643
No 246
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=73.91 E-value=40 Score=28.24 Aligned_cols=39 Identities=23% Similarity=0.462 Sum_probs=33.1
Q ss_pred HHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhc-ccccc
Q 026239 93 YDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEG-AEEFF 134 (241)
Q Consensus 93 ~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~G-a~~~l 134 (241)
+++++.+++.. ++|||+..+-.+.+.+.+++..| +++.+
T Consensus 188 ~~~~~~i~~~~---~ipvia~GGi~s~~di~~~~~~g~~dgv~ 227 (254)
T TIGR00735 188 LELTKAVSEAV---KIPVIASGGAGKPEHFYEAFTKGKADAAL 227 (254)
T ss_pred HHHHHHHHHhC---CCCEEEeCCCCCHHHHHHHHHcCCcceee
Confidence 68889998753 78999999999999999999988 88843
No 247
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=73.78 E-value=28 Score=28.82 Aligned_cols=53 Identities=19% Similarity=0.267 Sum_probs=41.4
Q ss_pred EEEEeCC-CC-CC-CHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhccccccc
Q 026239 80 LVITDYC-MP-GM-TGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFL 135 (241)
Q Consensus 80 lIilD~~-mp-~~-~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~ 135 (241)
++++|++ +- +. ..+++++++.+.. .+||.+=.+-.+.+.+.++++.|++..+.
T Consensus 46 l~ivDldga~~g~~~n~~~i~~i~~~~---~~pv~~gGGIrs~edv~~l~~~G~~~viv 101 (228)
T PRK04128 46 IHVVDLDGAFEGKPKNLDVVKNIIRET---GLKVQVGGGLRTYESIKDAYEIGVENVII 101 (228)
T ss_pred EEEEECcchhcCCcchHHHHHHHHhhC---CCCEEEcCCCCCHHHHHHHHHCCCCEEEE
Confidence 7888887 22 22 4688999998753 68999877788889999999999998765
No 248
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=73.50 E-value=41 Score=29.79 Aligned_cols=44 Identities=20% Similarity=0.243 Sum_probs=31.3
Q ss_pred CCcEEEEcc----CCChHHHHHHHHhcccccccCCCCHHHHHHhhHHH
Q 026239 107 DIPVVIMSS----ENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHL 150 (241)
Q Consensus 107 ~ipvIils~----~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l 150 (241)
++-+|.+.. ....+.+..|+++|.+=++-||+..++..+++...
T Consensus 64 Di~~V~ipt~~P~~~H~e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A 111 (343)
T TIGR01761 64 DIACVVVRSAIVGGQGSALARALLARGIHVLQEHPLHPRDIQDLLRLA 111 (343)
T ss_pred CEEEEEeCCCCCCccHHHHHHHHHhCCCeEEEcCCCCHHHHHHHHHHH
Confidence 555555522 24467888999999999999999876666555444
No 249
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=73.10 E-value=36 Score=29.23 Aligned_cols=69 Identities=17% Similarity=0.155 Sum_probs=39.4
Q ss_pred ceEEEEeCCHHHHHHHHHHhhcCC-----CEEE-EECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCC
Q 026239 16 FHVLAVDDSIIDRKLIERLLKTSS-----YQVT-TVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPG 89 (241)
Q Consensus 16 ~~ILiVdd~~~~~~~l~~~L~~~g-----~~v~-~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~ 89 (241)
-+|.+||=|+.+.+..++.|.... -.|. ..+||.+.++-. ...||+||+|..-|.
T Consensus 101 e~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~-------------------~~~fDvIi~D~tdp~ 161 (282)
T COG0421 101 ERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDC-------------------EEKFDVIIVDSTDPV 161 (282)
T ss_pred ceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhC-------------------CCcCCEEEEcCCCCC
Confidence 456666666666666666665432 1232 344444444322 225899999998883
Q ss_pred CC-----HHHHHHHHHhcC
Q 026239 90 MT-----GYDLLKKIKESS 103 (241)
Q Consensus 90 ~~-----g~~ll~~ir~~~ 103 (241)
.- ..++.+.+++.-
T Consensus 162 gp~~~Lft~eFy~~~~~~L 180 (282)
T COG0421 162 GPAEALFTEEFYEGCRRAL 180 (282)
T ss_pred CcccccCCHHHHHHHHHhc
Confidence 22 246666666543
No 250
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=73.07 E-value=67 Score=28.44 Aligned_cols=66 Identities=11% Similarity=0.178 Sum_probs=41.0
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhccccc-ccCCCCHHHHHHhhHHHHHH
Q 026239 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEF-FLKPVRLSDLNKLKPHLMKT 153 (241)
Q Consensus 79 dlIilD~~mp~~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~-l~KP~~~~~L~~~~~~l~~~ 153 (241)
|++++-....+.-|.-+++.+.. .+|||....... .+.+..|..+| +..|.+.++|.+.+..++..
T Consensus 278 Dv~v~pS~~~E~f~~~~lEAma~-----G~PVI~s~~gg~----~Eiv~~~~~G~~l~~~~d~~~la~~I~~ll~d 344 (380)
T PRK15484 278 DLVVVPSQVEEAFCMVAVEAMAA-----GKPVLASTKGGI----TEFVLEGITGYHLAEPMTSDSIISDINRTLAD 344 (380)
T ss_pred CEEEeCCCCccccccHHHHHHHc-----CCCEEEeCCCCc----HhhcccCCceEEEeCCCCHHHHHHHHHHHHcC
Confidence 57776443333335556665553 688876443322 33456688888 56788999998777776643
No 251
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=72.99 E-value=12 Score=31.43 Aligned_cols=72 Identities=17% Similarity=0.224 Sum_probs=52.3
Q ss_pred ECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCC---CCHHHHHHHHHhcCCCCCCcEEEEccCCChHH
Q 026239 45 VDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPG---MTGYDLLKKIKESSSLRDIPVVIMSSENVPSR 121 (241)
Q Consensus 45 ~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~---~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~ 121 (241)
..+..+..+.+.....+ .++++|+.-.+ ...++++++|++.. ++||++-.+-.+.+.
T Consensus 29 ~~dp~~~a~~~~~~G~~-----------------~l~v~Dl~~~~~~~~~n~~~i~~i~~~~---~~pv~~~GGi~s~~d 88 (254)
T TIGR00735 29 AGDPVELAQRYDEEGAD-----------------ELVFLDITASSEGRTTMIDVVERTAETV---FIPLTVGGGIKSIED 88 (254)
T ss_pred CCCHHHHHHHHHHcCCC-----------------EEEEEcCCcccccChhhHHHHHHHHHhc---CCCEEEECCCCCHHH
Confidence 34666766666543333 28889987553 23467788887753 689999988889999
Q ss_pred HHHHHHhcccccccC
Q 026239 122 ISRCLEEGAEEFFLK 136 (241)
Q Consensus 122 ~~~~l~~Ga~~~l~K 136 (241)
+.+++..||+..+.-
T Consensus 89 ~~~~~~~Ga~~vivg 103 (254)
T TIGR00735 89 VDKLLRAGADKVSIN 103 (254)
T ss_pred HHHHHHcCCCEEEEC
Confidence 999999999877653
No 252
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=72.98 E-value=65 Score=28.28 Aligned_cols=41 Identities=12% Similarity=0.217 Sum_probs=32.7
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhccccccc
Q 026239 92 GYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFL 135 (241)
Q Consensus 92 g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~ 135 (241)
++..+..++... ++|||.-.+-....++.+|+.+||+.+..
T Consensus 186 ~l~ai~ev~~a~---~~pVIadGGIr~~~Di~KALa~GAd~Vmi 226 (321)
T TIGR01306 186 QLAALRWCAKAA---RKPIIADGGIRTHGDIAKSIRFGASMVMI 226 (321)
T ss_pred HHHHHHHHHHhc---CCeEEEECCcCcHHHHHHHHHcCCCEEee
Confidence 355677777632 68999999988899999999999997744
No 253
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=72.96 E-value=15 Score=31.63 Aligned_cols=68 Identities=9% Similarity=0.090 Sum_probs=46.4
Q ss_pred EEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEccCCChHHH
Q 026239 43 TTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRI 122 (241)
Q Consensus 43 ~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~ 122 (241)
+.+++.++|.+++.. .+|+|++| +|+..+--++.+.++...+ . .++-.|+.-+.+.+
T Consensus 194 VEv~tleqa~ea~~a-------------------gaDiI~LD-n~~~e~l~~av~~~~~~~~--~-~~leaSGGI~~~ni 250 (284)
T PRK06096 194 VEADTPKEAIAALRA-------------------QPDVLQLD-KFSPQQATEIAQIAPSLAP--H-CTLSLAGGINLNTL 250 (284)
T ss_pred EECCCHHHHHHHHHc-------------------CCCEEEEC-CCCHHHHHHHHHHhhccCC--C-eEEEEECCCCHHHH
Confidence 467899999998842 36799999 4443333444454443222 2 46777888889999
Q ss_pred HHHHHhccccc
Q 026239 123 SRCLEEGAEEF 133 (241)
Q Consensus 123 ~~~l~~Ga~~~ 133 (241)
......|+|-+
T Consensus 251 ~~yA~tGvD~I 261 (284)
T PRK06096 251 KNYADCGIRLF 261 (284)
T ss_pred HHHHhcCCCEE
Confidence 98889998754
No 254
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=72.84 E-value=15 Score=29.38 Aligned_cols=31 Identities=10% Similarity=0.094 Sum_probs=26.1
Q ss_pred ceEEEEeCCHHHHHHHHHHhhcCCCEEEEEC
Q 026239 16 FHVLAVDDSIIDRKLIERLLKTSSYQVTTVD 46 (241)
Q Consensus 16 ~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~ 46 (241)
+||||||....+-..+.++|+..|+.+.++.
T Consensus 2 ~~iliid~~dsf~~~i~~~l~~~g~~~~v~~ 32 (190)
T PRK06895 2 TKLLIINNHDSFTFNLVDLIRKLGVPMQVVN 32 (190)
T ss_pred cEEEEEeCCCchHHHHHHHHHHcCCcEEEEE
Confidence 6899999887777779999999998777655
No 255
>PLN02366 spermidine synthase
Probab=72.62 E-value=45 Score=29.05 Aligned_cols=28 Identities=11% Similarity=0.088 Sum_probs=18.1
Q ss_pred ccccEEEEeCCCCCCC-----HHHHHHHHHhcC
Q 026239 76 VGVNLVITDYCMPGMT-----GYDLLKKIKESS 103 (241)
Q Consensus 76 ~~~dlIilD~~mp~~~-----g~~ll~~ir~~~ 103 (241)
..||+||+|..-|... ..++++.++..-
T Consensus 164 ~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L 196 (308)
T PLN02366 164 GTYDAIIVDSSDPVGPAQELFEKPFFESVARAL 196 (308)
T ss_pred CCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhc
Confidence 3589999998766432 235666666543
No 256
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=72.41 E-value=80 Score=30.09 Aligned_cols=101 Identities=16% Similarity=0.195 Sum_probs=58.2
Q ss_pred cceEEEEeCCHHHHHHHHHHhhcCCC--EEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCH
Q 026239 15 QFHVLAVDDSIIDRKLIERLLKTSSY--QVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTG 92 (241)
Q Consensus 15 ~~~ILiVdd~~~~~~~l~~~L~~~g~--~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g 92 (241)
.++++||.|.+. +..+....+..|. .|.......+.-.++. ..|+.++-. ..+.-|
T Consensus 429 dirLvIVGdG~~-~eeLk~la~elgL~d~V~FlG~~~Dv~~~La--------------------aADVfVlPS-~~EGfp 486 (578)
T PRK15490 429 ATRFVLVGDGDL-RAEAQKRAEQLGILERILFVGASRDVGYWLQ--------------------KMNVFILFS-RYEGLP 486 (578)
T ss_pred CeEEEEEeCchh-HHHHHHHHHHcCCCCcEEECCChhhHHHHHH--------------------hCCEEEEcc-cccCcc
Confidence 466677776543 3445555555443 3444444334333332 135666632 234456
Q ss_pred HHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHh
Q 026239 93 YDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKL 146 (241)
Q Consensus 93 ~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~ 146 (241)
..+++.+.. .+|||....... .+.+..|.++|+..|.+...|...
T Consensus 487 ~vlLEAMA~-----GlPVVATdvGG~----~EiV~dG~nG~LVp~~D~~aLa~a 531 (578)
T PRK15490 487 NVLIEAQMV-----GVPVISTPAGGS----AECFIEGVSGFILDDAQTVNLDQA 531 (578)
T ss_pred HHHHHHHHh-----CCCEEEeCCCCc----HHHcccCCcEEEECCCChhhHHHH
Confidence 777777764 679985543332 344568999999999887666443
No 257
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=72.39 E-value=72 Score=29.28 Aligned_cols=65 Identities=17% Similarity=0.238 Sum_probs=41.8
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHh------cccccccCCCCHHHHHHhhHHHH
Q 026239 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEE------GAEEFFLKPVRLSDLNKLKPHLM 151 (241)
Q Consensus 78 ~dlIilD~~mp~~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~------Ga~~~l~KP~~~~~L~~~~~~l~ 151 (241)
.|++++-.. ...-|+.+++.+.. .+|||. |..... .+.+.. |..+++..|.+.++|...+..++
T Consensus 371 aDv~vlpS~-~Eg~p~~vlEAma~-----G~PVVa-td~g~~---~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll 440 (475)
T cd03813 371 LDVLVLTSI-SEGQPLVILEAMAA-----GIPVVA-TDVGSC---RELIEGADDEALGPAGEVVPPADPEALARAILRLL 440 (475)
T ss_pred CCEEEeCch-hhcCChHHHHHHHc-----CCCEEE-CCCCCh---HHHhcCCcccccCCceEEECCCCHHHHHHHHHHHh
Confidence 457776543 33446677777664 678876 433322 233333 67899999999999987777765
Q ss_pred H
Q 026239 152 K 152 (241)
Q Consensus 152 ~ 152 (241)
.
T Consensus 441 ~ 441 (475)
T cd03813 441 K 441 (475)
T ss_pred c
Confidence 4
No 258
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=72.23 E-value=28 Score=25.24 Aligned_cols=71 Identities=21% Similarity=0.312 Sum_probs=45.9
Q ss_pred eEEEEeCCHHHHHHHHHHh---hcCCCE--EEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCC
Q 026239 17 HVLAVDDSIIDRKLIERLL---KTSSYQ--VTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMT 91 (241)
Q Consensus 17 ~ILiVdd~~~~~~~l~~~L---~~~g~~--v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~ 91 (241)
-+.+|.||+..+..+..-- +..+-. |+-+.+ .+++..+....| ++.|-..+
T Consensus 26 p~FlIGdD~~S~~WL~~~~~~L~~l~AvGlVVnV~t-~~~l~~Lr~lap-----------------------gl~l~P~s 81 (105)
T TIGR03765 26 PLFLIGDDPASRQWLQQNAAALKSLGAVGLVVNVET-AAALQRLRALAP-----------------------GLPLLPVS 81 (105)
T ss_pred ceEEEeCCHHHHHHHHHHHHHHHHCCCeEEEEecCC-HHHHHHHHHHcC-----------------------CCcccCCC
Confidence 5789999999998887643 333321 233333 455666654333 34556779
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEcc
Q 026239 92 GYDLLKKIKESSSLRDIPVVIMSS 115 (241)
Q Consensus 92 g~~ll~~ir~~~~~~~ipvIils~ 115 (241)
|.++.+++.- .+-||+|...
T Consensus 82 gddLa~rL~l----~hYPvLit~t 101 (105)
T TIGR03765 82 GDDLAERLGL----RHYPVLITAT 101 (105)
T ss_pred HHHHHHHhCC----CcccEEEecC
Confidence 9999999964 3668887654
No 259
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=72.10 E-value=16 Score=29.66 Aligned_cols=91 Identities=18% Similarity=0.268 Sum_probs=54.6
Q ss_pred HHHHhhcCCCEEEE--ECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCC-----CCHHHHHHHHHhcC
Q 026239 31 IERLLKTSSYQVTT--VDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPG-----MTGYDLLKKIKESS 103 (241)
Q Consensus 31 l~~~L~~~g~~v~~--~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~-----~~g~~ll~~ir~~~ 103 (241)
....|+..||.+.. +..+..-+..+... ++|.|-+|..+-. .....+++.+....
T Consensus 138 ~i~~l~~~G~~ialddfg~~~~~~~~l~~l------------------~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~ 199 (241)
T smart00052 138 TLQRLRELGVRIALDDFGTGYSSLSYLKRL------------------PVDLLKIDKSFVRDLQTDPEDEAIVQSIIELA 199 (241)
T ss_pred HHHHHHHCCCEEEEeCCCCcHHHHHHHHhC------------------CCCeEEECHHHHhhhccChhHHHHHHHHHHHH
Confidence 34456778887764 44555566666433 3558888865431 12345555555433
Q ss_pred CCCCCcEEEEccCCChHHHHHHHHhccc---c-cccCCCCH
Q 026239 104 SLRDIPVVIMSSENVPSRISRCLEEGAE---E-FFLKPVRL 140 (241)
Q Consensus 104 ~~~~ipvIils~~~~~~~~~~~l~~Ga~---~-~l~KP~~~ 140 (241)
...++.|| .++-.+.+....+.+.|++ | |+.||...
T Consensus 200 ~~~~~~vi-a~gVe~~~~~~~l~~~Gi~~~QG~~~~~p~~~ 239 (241)
T smart00052 200 QKLGLQVV-AEGVETPEQLDLLRSLGCDYGQGYLFSRPLPL 239 (241)
T ss_pred HHCCCeEE-EecCCCHHHHHHHHHcCCCEEeeceeccCCCC
Confidence 22245554 5666677888888999986 3 46788654
No 260
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=72.02 E-value=44 Score=28.65 Aligned_cols=91 Identities=12% Similarity=0.147 Sum_probs=55.9
Q ss_pred eEEEEeCCHHHHHHHHHHh----hcCC--CEE-EEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCC
Q 026239 17 HVLAVDDSIIDRKLIERLL----KTSS--YQV-TTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPG 89 (241)
Q Consensus 17 ~ILiVdd~~~~~~~l~~~L----~~~g--~~v-~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~ 89 (241)
.|||-|.+....-.+...+ +..+ ..+ ..+.+.+++.+.+. ..+|.|.+|-
T Consensus 160 ~vlikdnHi~~~g~~~~~v~~aR~~~~~~~~Igvsv~tleea~~A~~-------------------~gaDyI~lD~---- 216 (277)
T PRK08072 160 GVMIKDNHIAFCGSITKAVTSVREKLGHMVKIEVETETEEQVREAVA-------------------AGADIIMFDN---- 216 (277)
T ss_pred eEEEchhHHHhhCCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHH-------------------cCCCEEEECC----
Confidence 4677777654443333333 2333 223 36788999888763 2356888873
Q ss_pred CCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhccccc
Q 026239 90 MTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEF 133 (241)
Q Consensus 90 ~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~ 133 (241)
-|.+.++++.+... ..+|+ +.++.-..+.+....+.|++.+
T Consensus 217 -~~~e~l~~~~~~~~-~~i~i-~AiGGIt~~ni~~~a~~Gvd~I 257 (277)
T PRK08072 217 -RTPDEIREFVKLVP-SAIVT-EASGGITLENLPAYGGTGVDYI 257 (277)
T ss_pred -CCHHHHHHHHHhcC-CCceE-EEECCCCHHHHHHHHHcCCCEE
Confidence 35677777776432 13443 3455667888889999999875
No 261
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=71.86 E-value=37 Score=26.63 Aligned_cols=80 Identities=8% Similarity=0.072 Sum_probs=52.1
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhcC--CCEEEEECC-------HHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEE
Q 026239 13 ESQFHVLAVDDSIIDRKLIERLLKTS--SYQVTTVDS-------GSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVIT 83 (241)
Q Consensus 13 ~~~~~ILiVdd~~~~~~~l~~~L~~~--g~~v~~~~~-------~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIil 83 (241)
....+|.++...+.....+...|+.. |..+..+.+ .++.++.+.... +|+|++
T Consensus 46 ~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~------------------pdiv~v 107 (172)
T PF03808_consen 46 QRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINASG------------------PDIVFV 107 (172)
T ss_pred HcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHcC------------------CCEEEE
Confidence 34579999999998888888877654 455553333 344555665444 559999
Q ss_pred eCCCCCCCHHHHHHHHHhcCCCCCCcEEEEcc
Q 026239 84 DYCMPGMTGYDLLKKIKESSSLRDIPVVIMSS 115 (241)
Q Consensus 84 D~~mp~~~g~~ll~~ir~~~~~~~ipvIils~ 115 (241)
.+.+|... .++...+... ..+|++..+
T Consensus 108 glG~PkQE--~~~~~~~~~l---~~~v~i~vG 134 (172)
T PF03808_consen 108 GLGAPKQE--RWIARHRQRL---PAGVIIGVG 134 (172)
T ss_pred ECCCCHHH--HHHHHHHHHC---CCCEEEEEC
Confidence 99888654 4666666654 345555444
No 262
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=71.76 E-value=24 Score=28.21 Aligned_cols=53 Identities=17% Similarity=0.298 Sum_probs=37.5
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhccccc
Q 026239 77 GVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEF 133 (241)
Q Consensus 77 ~~dlIilD~~mp~~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~ 133 (241)
.+|.|-+ +--...-|.+.++.++... +++|++.+.+ -+.+.+..++++|++.+
T Consensus 125 Gadyv~~-Fpt~~~~G~~~l~~~~~~~--~~ipvvaiGG-I~~~n~~~~l~aGa~~v 177 (187)
T PRK07455 125 GASCVKV-FPVQAVGGADYIKSLQGPL--GHIPLIPTGG-VTLENAQAFIQAGAIAV 177 (187)
T ss_pred CCCEEEE-CcCCcccCHHHHHHHHhhC--CCCcEEEeCC-CCHHHHHHHHHCCCeEE
Confidence 3456655 2222245899999999754 3799876655 56788899999999875
No 263
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=71.76 E-value=49 Score=26.30 Aligned_cols=84 Identities=24% Similarity=0.303 Sum_probs=51.5
Q ss_pred HHHHHHhhcCCCEEE----EECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCC-----CCCCHHHHHHHH
Q 026239 29 KLIERLLKTSSYQVT----TVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCM-----PGMTGYDLLKKI 99 (241)
Q Consensus 29 ~~l~~~L~~~g~~v~----~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~m-----p~~~g~~ll~~i 99 (241)
..+.+.++..|..+. .+.+..+++..+. ..+|.|.+...- ....+.+.++.+
T Consensus 93 ~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~~-------------------~~~d~v~~~~~~~~~~~~~~~~~~~i~~~ 153 (202)
T cd04726 93 KKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLK-------------------LGVDIVILHRGIDAQAAGGWWPEDDLKKV 153 (202)
T ss_pred HHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHH-------------------CCCCEEEEcCcccccccCCCCCHHHHHHH
Confidence 334444555565443 3456667666332 234576664211 124567778888
Q ss_pred HhcCCCCCCcEEEEccCCChHHHHHHHHhccccccc
Q 026239 100 KESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFL 135 (241)
Q Consensus 100 r~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~ 135 (241)
+.. .++||++..+- ..+.+..+++.||+.++.
T Consensus 154 ~~~---~~~~i~~~GGI-~~~~i~~~~~~Gad~vvv 185 (202)
T cd04726 154 KKL---LGVKVAVAGGI-TPDTLPEFKKAGADIVIV 185 (202)
T ss_pred Hhh---cCCCEEEECCc-CHHHHHHHHhcCCCEEEE
Confidence 764 26888876665 488899999999998754
No 264
>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]
Probab=71.63 E-value=19 Score=29.40 Aligned_cols=57 Identities=23% Similarity=0.332 Sum_probs=45.0
Q ss_pred cccEEEEeCCCCC-CC--HHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccC
Q 026239 77 GVNLVITDYCMPG-MT--GYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLK 136 (241)
Q Consensus 77 ~~dlIilD~~mp~-~~--g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~K 136 (241)
.+++|++|+.--| +. -++++.++.... .-||++=.+-...+....+...|+++.|.-
T Consensus 151 ~~~lIvLDi~aVGt~~G~~~E~l~~~~~~s---~~pVllGGGV~g~Edlel~~~~Gv~gvLva 210 (229)
T COG1411 151 DPGLIVLDIGAVGTKSGPDYELLTKVLELS---EHPVLLGGGVGGMEDLELLLGMGVSGVLVA 210 (229)
T ss_pred CCCeEEEEccccccccCCCHHHHHHHHHhc---cCceeecCCcCcHHHHHHHhcCCCceeeeh
Confidence 4779999998765 33 378999988754 568888777778888888999999998763
No 265
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=71.47 E-value=34 Score=26.25 Aligned_cols=72 Identities=21% Similarity=0.260 Sum_probs=46.2
Q ss_pred ceEEEEeCCHHHHHHHHHHh---hcCCCE--EEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCC
Q 026239 16 FHVLAVDDSIIDRKLIERLL---KTSSYQ--VTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGM 90 (241)
Q Consensus 16 ~~ILiVdd~~~~~~~l~~~L---~~~g~~--v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~ 90 (241)
.-+.||.||+..+..|+.-. +..+-. |+-+. ..++|..|+...+ ++.|-..
T Consensus 63 ~plFlVGdD~~S~~WL~~~~~~L~~l~AvGlVVNV~-t~~~L~~Lr~lap-----------------------gl~l~P~ 118 (142)
T PF11072_consen 63 QPLFLVGDDPLSRQWLQQNAEELKQLGAVGLVVNVA-TEAALQRLRQLAP-----------------------GLPLLPV 118 (142)
T ss_pred CCEEEEcCCHHHHHHHHHHHHHHHHCCCeEEEEecC-CHHHHHHHHHHcC-----------------------CCeecCC
Confidence 34789999999999887644 444322 22333 3455666654333 3445567
Q ss_pred CHHHHHHHHHhcCCCCCCcEEEEcc
Q 026239 91 TGYDLLKKIKESSSLRDIPVVIMSS 115 (241)
Q Consensus 91 ~g~~ll~~ir~~~~~~~ipvIils~ 115 (241)
+|.++.+++.- .+-||+|...
T Consensus 119 sgddLA~rL~l----~HYPvLIt~~ 139 (142)
T PF11072_consen 119 SGDDLARRLGL----SHYPVLITAT 139 (142)
T ss_pred CHHHHHHHhCC----CcccEEeecC
Confidence 89999999964 3668887543
No 266
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=71.37 E-value=20 Score=30.06 Aligned_cols=53 Identities=15% Similarity=0.350 Sum_probs=38.4
Q ss_pred EEEEeCCCCC-CC--HHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHh-ccccccc
Q 026239 80 LVITDYCMPG-MT--GYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEE-GAEEFFL 135 (241)
Q Consensus 80 lIilD~~mp~-~~--g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~-Ga~~~l~ 135 (241)
++++|+.--+ +. .+++++.+++.. ++|||+-.+-.+.+.+.++++. |+++.+.
T Consensus 170 ii~~~i~~~g~~~g~d~~~i~~~~~~~---~ipvia~GGv~s~~d~~~~~~~~G~~gviv 226 (253)
T PRK02083 170 ILLTSMDRDGTKNGYDLELTRAVSDAV---NVPVIASGGAGNLEHFVEAFTEGGADAALA 226 (253)
T ss_pred EEEcCCcCCCCCCCcCHHHHHHHHhhC---CCCEEEECCCCCHHHHHHHHHhCCccEEeE
Confidence 6676654211 22 367788888753 6899999888888999999975 9987765
No 267
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=71.22 E-value=63 Score=27.35 Aligned_cols=42 Identities=17% Similarity=0.294 Sum_probs=32.8
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCC
Q 026239 92 GYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137 (241)
Q Consensus 92 g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP 137 (241)
..++++.+|+.. ++||++=.+-.+++.+..++.. ||+++.-.
T Consensus 188 ~~~~i~~vk~~~---~~pv~vGfGI~~~e~v~~~~~~-ADGviVGS 229 (258)
T PRK13111 188 LAELVARLKAHT---DLPVAVGFGISTPEQAAAIAAV-ADGVIVGS 229 (258)
T ss_pred HHHHHHHHHhcC---CCcEEEEcccCCHHHHHHHHHh-CCEEEEcH
Confidence 456889999843 7899987777788888888764 99987765
No 268
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=70.81 E-value=44 Score=27.64 Aligned_cols=60 Identities=13% Similarity=0.319 Sum_probs=29.5
Q ss_pred EEeCCCCCCCHHHHHHHHHhcCCCCCCc-E-EEEccCCChHHHHHHHHhcccccccCCCCHHHH
Q 026239 82 ITDYCMPGMTGYDLLKKIKESSSLRDIP-V-VIMSSENVPSRISRCLEEGAEEFFLKPVRLSDL 143 (241)
Q Consensus 82 ilD~~mp~~~g~~ll~~ir~~~~~~~ip-v-Iils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L 143 (241)
++.+.|-.-++++.++.|+.... ...| + |=...--+.+.+..++++||+ |+.-|.-..++
T Consensus 43 ~iEiT~~tp~a~~~i~~l~~~~~-~~~p~~~vGaGTVl~~e~a~~a~~aGA~-FiVsP~~~~~v 104 (222)
T PRK07114 43 VFEFTNRGDFAHEVFAELVKYAA-KELPGMILGVGSIVDAATAALYIQLGAN-FIVTPLFNPDI 104 (222)
T ss_pred EEEEeCCCCcHHHHHHHHHHHHH-hhCCCeEEeeEeCcCHHHHHHHHHcCCC-EEECCCCCHHH
Confidence 34444444456666666653211 0112 2 222223456667777777774 66666544444
No 269
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=70.80 E-value=26 Score=28.77 Aligned_cols=80 Identities=14% Similarity=0.200 Sum_probs=52.9
Q ss_pred HHHHHHhhcCCCEEE-EECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCC-CCCHHHHHHHHHhcCCCC
Q 026239 29 KLIERLLKTSSYQVT-TVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMP-GMTGYDLLKKIKESSSLR 106 (241)
Q Consensus 29 ~~l~~~L~~~g~~v~-~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp-~~~g~~ll~~ir~~~~~~ 106 (241)
..+.+.....|.-+. -+.+..|+...+.. .+|+|=+ .| +.-|.+.++.++... +
T Consensus 99 ~~v~~~~~~~~i~~iPG~~T~~E~~~A~~~-------------------Gad~vkl---FPa~~~G~~~ik~l~~~~--p 154 (213)
T PRK06552 99 RETAKICNLYQIPYLPGCMTVTEIVTALEA-------------------GSEIVKL---FPGSTLGPSFIKAIKGPL--P 154 (213)
T ss_pred HHHHHHHHHcCCCEECCcCCHHHHHHHHHc-------------------CCCEEEE---CCcccCCHHHHHHHhhhC--C
Confidence 334444445565444 56778888777632 2446655 33 445789999998754 4
Q ss_pred CCcEEEEccCCChHHHHHHHHhccccc
Q 026239 107 DIPVVIMSSENVPSRISRCLEEGAEEF 133 (241)
Q Consensus 107 ~ipvIils~~~~~~~~~~~l~~Ga~~~ 133 (241)
++|++.. +.-+.+.+.+++.+|++.+
T Consensus 155 ~ip~~at-GGI~~~N~~~~l~aGa~~v 180 (213)
T PRK06552 155 QVNVMVT-GGVNLDNVKDWFAAGADAV 180 (213)
T ss_pred CCEEEEE-CCCCHHHHHHHHHCCCcEE
Confidence 8998754 5556788999999998765
No 270
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=70.54 E-value=23 Score=30.39 Aligned_cols=39 Identities=26% Similarity=0.510 Sum_probs=31.0
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEccC-CChHHHHHHHHhccccc
Q 026239 92 GYDLLKKIKESSSLRDIPVVIMSSE-NVPSRISRCLEEGAEEF 133 (241)
Q Consensus 92 g~~ll~~ir~~~~~~~ipvIils~~-~~~~~~~~~l~~Ga~~~ 133 (241)
++++++.|++.. ++|+++..++ ...+.+.++++.|++.+
T Consensus 188 ~~e~L~~i~~~~---~iPlv~hGgSGi~~e~i~~~i~~Gi~ki 227 (282)
T TIGR01859 188 DFERLKEIKELT---NIPLVLHGASGIPEEQIKKAIKLGIAKI 227 (282)
T ss_pred CHHHHHHHHHHh---CCCEEEECCCCCCHHHHHHHHHcCCCEE
Confidence 589999998864 6999988754 35667888999998876
No 271
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=70.48 E-value=34 Score=28.34 Aligned_cols=59 Identities=12% Similarity=0.077 Sum_probs=42.2
Q ss_pred cceEEEEeCCHHHHHHHHHHhhcCCCE--EE-EECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCC
Q 026239 15 QFHVLAVDDSIIDRKLIERLLKTSSYQ--VT-TVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCM 87 (241)
Q Consensus 15 ~~~ILiVdd~~~~~~~l~~~L~~~g~~--v~-~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~m 87 (241)
.-+|.-+|-++......+..++..|+. +. ...+..+.+..+.... ....||+|++|..-
T Consensus 93 ~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~--------------~~~~fD~VfiDa~k 154 (234)
T PLN02781 93 DGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNND--------------PKPEFDFAFVDADK 154 (234)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCC--------------CCCCCCEEEECCCH
Confidence 458999999999999999999888763 44 4567777766553221 12358999999753
No 272
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=70.15 E-value=66 Score=29.17 Aligned_cols=109 Identities=11% Similarity=0.068 Sum_probs=54.8
Q ss_pred CcceEEEEeCCHHH---HHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCC
Q 026239 14 SQFHVLAVDDSIID---RKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGM 90 (241)
Q Consensus 14 ~~~~ILiVdd~~~~---~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~ 90 (241)
...+|.+|+-|+.- ...+..+-+..|+.+..+.+..+..+.+.... ....+|+||+|.-=-.-
T Consensus 233 ~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~--------------~~~~~D~VLIDTAGr~~ 298 (407)
T PRK12726 233 QNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMT--------------YVNCVDHILIDTVGRNY 298 (407)
T ss_pred cCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHH--------------hcCCCCEEEEECCCCCc
Confidence 45688888877532 33444455556666666667666555543221 01236799999742211
Q ss_pred CHHHHHHHHHhcC--CCCCCcEEEEccCCChHHHHHHH----HhcccccccC
Q 026239 91 TGYDLLKKIKESS--SLRDIPVVIMSSENVPSRISRCL----EEGAEEFFLK 136 (241)
Q Consensus 91 ~g~~ll~~ir~~~--~~~~ipvIils~~~~~~~~~~~l----~~Ga~~~l~K 136 (241)
..-+.+..++... ..++..++++++..........+ ..|.+++|.-
T Consensus 299 ~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d~~~i~~~f~~l~i~glI~T 350 (407)
T PRK12726 299 LAEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFIIT 350 (407)
T ss_pred cCHHHHHHHHHHhhccCCceEEEECCCcccHHHHHHHHHhcCcCCCCEEEEE
Confidence 2233444443311 11234455566544444444433 2455565543
No 273
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=70.13 E-value=26 Score=28.68 Aligned_cols=73 Identities=16% Similarity=0.197 Sum_probs=50.5
Q ss_pred ECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCC--C-CCHHHHHHHHHhcCCCCCCcEEEEccCCChHH
Q 026239 45 VDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMP--G-MTGYDLLKKIKESSSLRDIPVVIMSSENVPSR 121 (241)
Q Consensus 45 ~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp--~-~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~ 121 (241)
..+..+..+.+.....+ .+.++|+.-- + ..-+++++.+++.. .+||++-.+-.+.+.
T Consensus 29 ~~~~~~~a~~~~~~g~~-----------------~i~v~dld~~~~g~~~~~~~i~~i~~~~---~~pv~~~GGI~~~ed 88 (233)
T PRK00748 29 SDDPVAQAKAWEDQGAK-----------------WLHLVDLDGAKAGKPVNLELIEAIVKAV---DIPVQVGGGIRSLET 88 (233)
T ss_pred cCCHHHHHHHHHHcCCC-----------------EEEEEeCCccccCCcccHHHHHHHHHHC---CCCEEEcCCcCCHHH
Confidence 34666666666544333 2788887421 1 24578888887753 689998777788889
Q ss_pred HHHHHHhcccccccCC
Q 026239 122 ISRCLEEGAEEFFLKP 137 (241)
Q Consensus 122 ~~~~l~~Ga~~~l~KP 137 (241)
+.+++..||+..+.--
T Consensus 89 ~~~~~~~Ga~~vilg~ 104 (233)
T PRK00748 89 VEALLDAGVSRVIIGT 104 (233)
T ss_pred HHHHHHcCCCEEEECc
Confidence 9999999998776543
No 274
>CHL00101 trpG anthranilate synthase component 2
Probab=70.10 E-value=14 Score=29.59 Aligned_cols=31 Identities=13% Similarity=0.031 Sum_probs=26.7
Q ss_pred EEEEeCCHHHHHHHHHHhhcCCCEEEEECCH
Q 026239 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSG 48 (241)
Q Consensus 18 ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~ 48 (241)
|||||....+-..|.+.|+..|+.+.++...
T Consensus 2 iliid~~dsft~~l~~~l~~~g~~~~v~~~~ 32 (190)
T CHL00101 2 ILIIDNYDSFTYNLVQSLGELNSDVLVCRND 32 (190)
T ss_pred EEEEECCCchHHHHHHHHHhcCCCEEEEECC
Confidence 8999998888889999999999888876644
No 275
>PRK00536 speE spermidine synthase; Provisional
Probab=70.00 E-value=27 Score=29.64 Aligned_cols=83 Identities=20% Similarity=0.122 Sum_probs=44.7
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCC---CCCCC----CCCcccccccEEEEeC
Q 026239 13 ESQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQS---SHSVY----PNMHQEVGVNLVITDY 85 (241)
Q Consensus 13 ~~~~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~---~~~~~----~~~~~~~~~dlIilD~ 85 (241)
...-+||||..-. ...++++|+... +|+.++=-.+.+++++..-|.-.. -+++. ........||+||+|.
T Consensus 71 ~~pk~VLIiGGGD--Gg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~~~~~~~~~fDVIIvDs 147 (262)
T PRK00536 71 KELKEVLIVDGFD--LELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIICLQ 147 (262)
T ss_pred CCCCeEEEEcCCc--hHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeehhhhccCCcCCEEEEcC
Confidence 3457899997542 234455565443 788777666777777664332100 00000 0111235799999995
Q ss_pred CCCCCCHHHHHHHH
Q 026239 86 CMPGMTGYDLLKKI 99 (241)
Q Consensus 86 ~mp~~~g~~ll~~i 99 (241)
. ++.+-++.+++.
T Consensus 148 ~-~~~~fy~~~~~~ 160 (262)
T PRK00536 148 E-PDIHKIDGLKRM 160 (262)
T ss_pred C-CChHHHHHHHHh
Confidence 3 444555555444
No 276
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=69.91 E-value=64 Score=27.31 Aligned_cols=84 Identities=17% Similarity=0.206 Sum_probs=53.8
Q ss_pred HHHHhhcCCCEEE-EECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCH----HHHHHHHHhcCCC
Q 026239 31 IERLLKTSSYQVT-TVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTG----YDLLKKIKESSSL 105 (241)
Q Consensus 31 l~~~L~~~g~~v~-~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g----~~ll~~ir~~~~~ 105 (241)
+...-...|.++. .+.|.+|+-..+... .-|+.++--+... ++...+|...-+
T Consensus 148 l~~~A~~LGm~~LVEVh~~eEl~rAl~~g---------------------a~iIGINnRdL~tf~vdl~~t~~la~~~p- 205 (254)
T COG0134 148 LVDRAHELGMEVLVEVHNEEELERALKLG---------------------AKIIGINNRDLTTLEVDLETTEKLAPLIP- 205 (254)
T ss_pred HHHHHHHcCCeeEEEECCHHHHHHHHhCC---------------------CCEEEEeCCCcchheecHHHHHHHHhhCC-
Confidence 3334456788765 788888887777521 3344444444332 344555554433
Q ss_pred CCCcEEEEccCCChHHHHHHHHhcccccccC
Q 026239 106 RDIPVVIMSSENVPSRISRCLEEGAEEFFLK 136 (241)
Q Consensus 106 ~~ipvIils~~~~~~~~~~~l~~Ga~~~l~K 136 (241)
.+.-+|.-|+-..++.+.+....||++||.-
T Consensus 206 ~~~~~IsESGI~~~~dv~~l~~~ga~a~LVG 236 (254)
T COG0134 206 KDVILISESGISTPEDVRRLAKAGADAFLVG 236 (254)
T ss_pred CCcEEEecCCCCCHHHHHHHHHcCCCEEEec
Confidence 2455666677778999999999999999864
No 277
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=69.82 E-value=33 Score=28.73 Aligned_cols=60 Identities=17% Similarity=0.232 Sum_probs=39.2
Q ss_pred cccccEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCC
Q 026239 75 EVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPV 138 (241)
Q Consensus 75 ~~~~dlIilD~~mp~~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~ 138 (241)
++.||++|+=---|...|-.-.+.+-... ++|.|++|........ .+++..-.+||.-+.
T Consensus 58 ~~~pDf~i~isPN~a~PGP~~ARE~l~~~---~iP~IvI~D~p~~K~~-d~l~~~g~GYIivk~ 117 (277)
T PRK00994 58 EWKPDFVIVISPNPAAPGPKKAREILKAA---GIPCIVIGDAPGKKVK-DAMEEQGLGYIIVKA 117 (277)
T ss_pred hhCCCEEEEECCCCCCCCchHHHHHHHhc---CCCEEEEcCCCccchH-HHHHhcCCcEEEEec
Confidence 44566877755445556666666665432 7899999987665544 777777777866543
No 278
>COG5624 TAF61 Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=69.78 E-value=7.8 Score=34.75 Aligned_cols=39 Identities=28% Similarity=0.261 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHhhhhhHhhhhhhcCCCCCCCCCcCC
Q 026239 198 QQQQQQQQQQQQQQQSNNNKRKALEEGLSPERTRPRYNG 236 (241)
Q Consensus 198 qqqq~q~q~qq~~q~~~~~~r~~~~~~~~~~~~~~~~~~ 236 (241)
|+||.|+|+++.+|-..++-|+.-..|..|..+-|--||
T Consensus 236 Q~qq~q~q~~~pqqr~~~~~~r~~as~~~P~~~~~~S~~ 274 (505)
T COG5624 236 QFQQGQKQVLSPQQRFLHGMERYEASGMPPPAEWAGSNG 274 (505)
T ss_pred HHHHHHHHhhChHhhhhcchhhhhccCCCCCCcCCCccc
Confidence 334444444455555666777777788887766554443
No 279
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=69.64 E-value=58 Score=30.85 Aligned_cols=54 Identities=20% Similarity=0.190 Sum_probs=30.5
Q ss_pred ceEEEEeCCHHH---HHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCC
Q 026239 16 FHVLAVDDSIID---RKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYC 86 (241)
Q Consensus 16 ~~ILiVdd~~~~---~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~ 86 (241)
.+|.+|+-|... ...+..+-...|+.+..+.+..+....+... ..+|+||+|.-
T Consensus 381 kkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l-----------------~~~DLVLIDTa 437 (559)
T PRK12727 381 RDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERL-----------------RDYKLVLIDTA 437 (559)
T ss_pred CceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHh-----------------ccCCEEEecCC
Confidence 568888765421 2223333344566666666666655555421 23679999964
No 280
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=69.64 E-value=47 Score=29.52 Aligned_cols=54 Identities=22% Similarity=0.326 Sum_probs=38.8
Q ss_pred cccEEEEeCCCCC-------CCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccc
Q 026239 77 GVNLVITDYCMPG-------MTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFF 134 (241)
Q Consensus 77 ~~dlIilD~~mp~-------~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l 134 (241)
.+|.|++.-..|. .-|++.++++.... .+||+.+.+- +.+.+..++..|++++-
T Consensus 260 GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~~---~iPv~AiGGI-~~~ni~~l~~~Ga~gVA 320 (347)
T PRK02615 260 GADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKEA---PIPWFAIGGI-DKSNIPEVLQAGAKRVA 320 (347)
T ss_pred CCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhC---CCCEEEECCC-CHHHHHHHHHcCCcEEE
Confidence 3567776544432 34789999998743 6899998765 47788889999998773
No 281
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=69.54 E-value=24 Score=29.57 Aligned_cols=99 Identities=20% Similarity=0.301 Sum_probs=53.3
Q ss_pred HHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHHHHHHHHHhcCCCCC
Q 026239 28 RKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRD 107 (241)
Q Consensus 28 ~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~~ll~~ir~~~~~~~ 107 (241)
...|....+..|.......-..++++++... ++-++=+.-.+.+-+.|++.+... .
T Consensus 58 ~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~--------------------~~~~~KIaS~dl~n~~lL~~~A~t----g 113 (241)
T PF03102_consen 58 HKELFEYCKELGIDFFSTPFDEESVDFLEEL--------------------GVPAYKIASGDLTNLPLLEYIAKT----G 113 (241)
T ss_dssp HHHHHHHHHHTT-EEEEEE-SHHHHHHHHHH--------------------T-SEEEE-GGGTT-HHHHHHHHTT-----
T ss_pred HHHHHHHHHHcCCEEEECCCCHHHHHHHHHc--------------------CCCEEEeccccccCHHHHHHHHHh----C
Confidence 3445666677887766555556677777432 244445555677889999999874 6
Q ss_pred CcEEEEccCCChHHHHHHH----Hhcccccc------cCCCCHHHHH-HhhHHH
Q 026239 108 IPVVIMSSENVPSRISRCL----EEGAEEFF------LKPVRLSDLN-KLKPHL 150 (241)
Q Consensus 108 ipvIils~~~~~~~~~~~l----~~Ga~~~l------~KP~~~~~L~-~~~~~l 150 (241)
.|||+=|+....+.+.+++ +.|..++. .-|..+++++ +.+..+
T Consensus 114 kPvIlSTG~stl~EI~~Av~~~~~~~~~~l~llHC~s~YP~~~e~~NL~~i~~L 167 (241)
T PF03102_consen 114 KPVILSTGMSTLEEIERAVEVLREAGNEDLVLLHCVSSYPTPPEDVNLRVIPTL 167 (241)
T ss_dssp S-EEEE-TT--HHHHHHHHHHHHHHCT--EEEEEE-SSSS--GGG--TTHHHHH
T ss_pred CcEEEECCCCCHHHHHHHHHHHHhcCCCCEEEEecCCCCCCChHHcChHHHHHH
Confidence 7999999988877766654 45655543 2476677764 334333
No 282
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=69.53 E-value=16 Score=30.50 Aligned_cols=55 Identities=16% Similarity=0.399 Sum_probs=34.8
Q ss_pred HHHHHHHhcCCCCCCcEEEEcc-----CCChHHHHHHHHhcccccccC--CCC-HHHHHHhhHHHH
Q 026239 94 DLLKKIKESSSLRDIPVVIMSS-----ENVPSRISRCLEEGAEEFFLK--PVR-LSDLNKLKPHLM 151 (241)
Q Consensus 94 ~ll~~ir~~~~~~~ipvIils~-----~~~~~~~~~~l~~Ga~~~l~K--P~~-~~~L~~~~~~l~ 151 (241)
++++.+|.. .++|+++|+- .+....+..+.++|+++++.- |++ .+++.+++..+.
T Consensus 64 ~~v~~vr~~---~~~Pl~lM~y~n~~~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~ 126 (244)
T PRK13125 64 PLLEEVRKD---VSVPIILMTYLEDYVDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIK 126 (244)
T ss_pred HHHHHHhcc---CCCCEEEEEecchhhhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHH
Confidence 577777753 3789877642 233444778889999999875 443 355555554443
No 283
>PRK13566 anthranilate synthase; Provisional
Probab=69.47 E-value=23 Score=34.72 Aligned_cols=36 Identities=25% Similarity=0.217 Sum_probs=30.1
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCH
Q 026239 13 ESQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSG 48 (241)
Q Consensus 13 ~~~~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~ 48 (241)
....+|||||-...+...+.++|+..|+.|+++...
T Consensus 524 ~~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~ 559 (720)
T PRK13566 524 GEGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYG 559 (720)
T ss_pred CCCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECC
Confidence 356899999988888889999999999998876544
No 284
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=69.46 E-value=13 Score=34.11 Aligned_cols=56 Identities=18% Similarity=0.370 Sum_probs=41.3
Q ss_pred cccccEEEEeCCCCC-CCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhccccc
Q 026239 75 EVGVNLVITDYCMPG-MTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEF 133 (241)
Q Consensus 75 ~~~~dlIilD~~mp~-~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~ 133 (241)
+..+|+|.+|..-.. ...++.+++|+... +++|||+ ..-.+.+.+..++++||+.+
T Consensus 234 ~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~--~~~~vi~-G~v~t~~~a~~l~~aGad~i 290 (450)
T TIGR01302 234 KAGVDVIVIDSSHGHSIYVIDSIKEIKKTY--PDLDIIA-GNVATAEQAKALIDAGADGL 290 (450)
T ss_pred HhCCCEEEEECCCCcHhHHHHHHHHHHHhC--CCCCEEE-EeCCCHHHHHHHHHhCCCEE
Confidence 345789999985543 35678899998864 3788876 34456777888999999876
No 285
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=69.33 E-value=16 Score=36.41 Aligned_cols=72 Identities=15% Similarity=0.309 Sum_probs=45.4
Q ss_pred ccccEEEEe-CCCCCCCHHH-HHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHH
Q 026239 76 VGVNLVITD-YCMPGMTGYD-LLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLM 151 (241)
Q Consensus 76 ~~~dlIilD-~~mp~~~g~~-ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~ 151 (241)
..+.|+|+| .++-...+.. |++.|.+-. .++-+|++|.+ .+.+...+..-+..|-.++++.++|...+..++
T Consensus 119 ~~~KV~IIDEad~lt~~a~NaLLK~LEEpP--~~~~fIl~tt~--~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il 192 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQGFNALLKIVEEPP--EHLKFIFATTE--PDKVIGTIRSRTHHYPFRLVPPEVMRGYLERIC 192 (824)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHHhCCC--CCeEEEEEeCC--hhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHH
Confidence 356788888 4444444554 555555533 36666766643 344666677777788888888888876555543
No 286
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=69.31 E-value=33 Score=30.63 Aligned_cols=88 Identities=19% Similarity=0.174 Sum_probs=55.8
Q ss_pred HHHHHHhhcCCCEE--EEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeC-CCCCCC----HHHHHHHHHh
Q 026239 29 KLIERLLKTSSYQV--TTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDY-CMPGMT----GYDLLKKIKE 101 (241)
Q Consensus 29 ~~l~~~L~~~g~~v--~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~-~mp~~~----g~~ll~~ir~ 101 (241)
..|+.+-+..+..+ .-+-+.++|...+.. .+|.|++.. .-...+ .++.+..++.
T Consensus 226 ~~i~~ir~~~~~pviiKgV~~~eda~~a~~~-------------------G~d~I~VSnhGGrqld~~~~~~~~L~ei~~ 286 (361)
T cd04736 226 QDLRWLRDLWPHKLLVKGIVTAEDAKRCIEL-------------------GADGVILSNHGGRQLDDAIAPIEALAEIVA 286 (361)
T ss_pred HHHHHHHHhCCCCEEEecCCCHHHHHHHHHC-------------------CcCEEEECCCCcCCCcCCccHHHHHHHHHH
Confidence 34444444444333 245688888887643 244554422 111122 4778888876
Q ss_pred cCCCCCCcEEEEccCCChHHHHHHHHhcccccc-cCCC
Q 026239 102 SSSLRDIPVVIMSSENVPSRISRCLEEGAEEFF-LKPV 138 (241)
Q Consensus 102 ~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l-~KP~ 138 (241)
.. ++|||+-++-....++.+|+.+||+.++ -.|+
T Consensus 287 ~~---~~~vi~dGGIr~g~Dv~KALaLGA~aV~iGr~~ 321 (361)
T cd04736 287 AT---YKPVLIDSGIRRGSDIVKALALGANAVLLGRAT 321 (361)
T ss_pred Hh---CCeEEEeCCCCCHHHHHHHHHcCCCEEEECHHH
Confidence 43 4899988888889999999999999764 4454
No 287
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=69.12 E-value=48 Score=27.94 Aligned_cols=94 Identities=20% Similarity=0.320 Sum_probs=63.2
Q ss_pred EEe-CCHHHHHHHHHHhhcC-CCEEEE------ECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCC-C
Q 026239 20 AVD-DSIIDRKLIERLLKTS-SYQVTT------VDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPG-M 90 (241)
Q Consensus 20 iVd-d~~~~~~~l~~~L~~~-g~~v~~------~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~-~ 90 (241)
+++ |..++...++.+++.. ++.++. +.+..+|++.+... .++=|++.=.-+. .
T Consensus 94 ~L~~dg~vD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~al~~l~~l------------------G~~rILTSGg~~~a~ 155 (248)
T PRK11572 94 VLDVDGHVDMPRMRKIMAAAGPLAVTFHRAFDMCANPLNALKQLADL------------------GVARILTSGQQQDAE 155 (248)
T ss_pred eECCCCCcCHHHHHHHHHHhcCCceEEechhhccCCHHHHHHHHHHc------------------CCCEEECCCCCCCHH
Confidence 344 5567788888888755 354442 45788888887543 3557777655443 6
Q ss_pred CHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccc
Q 026239 91 TGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFF 134 (241)
Q Consensus 91 ~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l 134 (241)
+|++.++.+.+... . .+|+..+.-..+.+......|+.+|-
T Consensus 156 ~g~~~L~~lv~~a~--~-~~Im~GgGV~~~Nv~~l~~tG~~~~H 196 (248)
T PRK11572 156 QGLSLIMELIAASD--G-PIIMAGAGVRLSNLHKFLDAGVREVH 196 (248)
T ss_pred HHHHHHHHHHHhcC--C-CEEEeCCCCCHHHHHHHHHcCCCEEe
Confidence 79999999977543 3 34656666667777777789988774
No 288
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=68.82 E-value=12 Score=30.00 Aligned_cols=29 Identities=17% Similarity=0.047 Sum_probs=25.2
Q ss_pred EEEEeCCHHHHHHHHHHhhcCCCEEEEEC
Q 026239 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVD 46 (241)
Q Consensus 18 ILiVdd~~~~~~~l~~~L~~~g~~v~~~~ 46 (241)
||+||....+-..+..+|...|+.+.++.
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~~~~~~ 30 (193)
T PRK08857 2 LLMIDNYDSFTYNLYQYFCELGAQVKVVR 30 (193)
T ss_pred EEEEECCCCcHHHHHHHHHHCCCcEEEEE
Confidence 89999988888889999999998887665
No 289
>TIGR00096 probable S-adenosylmethionine-dependent methyltransferase, YraL family. No member of this family is characterized, but Pfam model pfam00590 (tetrapyrrole methylase) demonstrates homology between this family and its other members, which include several methylases for the tetrapyrrole class of compound, as well as the enzyme diphthine synthase.
Probab=68.32 E-value=19 Score=30.90 Aligned_cols=94 Identities=14% Similarity=0.096 Sum_probs=51.8
Q ss_pred cceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCC--CH
Q 026239 15 QFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGM--TG 92 (241)
Q Consensus 15 ~~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~--~g 92 (241)
...|+++||-....+++..+--...+.-..-.+..+....+...... ..-=+++.|..||.. .|
T Consensus 25 ~~d~i~~EDTR~t~kLL~~~~I~~~~~~~~~hn~~~~~~~l~~~l~~--------------g~~valvSDAG~P~ISDPG 90 (276)
T TIGR00096 25 CVDLFAEEDTRTSKLLLHLGIIATPKAFHIDNEFQEKQNLLAAKLEI--------------GNNIAVSSDAGPPLISDPG 90 (276)
T ss_pred hCCEEEecCchhHHHHHHhcCCCCceEEEecccHhHHHHHHHHHHHc--------------CCcEEEEecCCCCCcCCcc
Confidence 46688899988777766554221111111222332222222111111 111278999999985 49
Q ss_pred HHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhc
Q 026239 93 YDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEG 129 (241)
Q Consensus 93 ~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~G 129 (241)
+.+++..++. +++|+++.+ ++.+..|+.++
T Consensus 91 ~~LV~~~~~~----~i~v~~ipG---~sA~~~Al~~S 120 (276)
T TIGR00096 91 HLLVACREKA----NIIVVPLPG---AAALTAALCAS 120 (276)
T ss_pred HHHHHHHHHC----CCeEEcCCh---HHHHHHHHHhc
Confidence 9999999985 567777644 34444555433
No 290
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=68.26 E-value=34 Score=29.43 Aligned_cols=65 Identities=22% Similarity=0.188 Sum_probs=43.7
Q ss_pred EEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEccCCChHHH
Q 026239 43 TTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRI 122 (241)
Q Consensus 43 ~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~ 122 (241)
+.+++.+++.+++.. .+|+|.+|-. +--++-+.+..... ..+ +..|+.-+.+.+
T Consensus 199 VEv~tleea~ea~~~-------------------gaDiI~LDn~----s~e~l~~av~~~~~--~~~-leaSGGI~~~ni 252 (281)
T PRK06106 199 VEVDTLDQLEEALEL-------------------GVDAVLLDNM----TPDTLREAVAIVAG--RAI-TEASGRITPETA 252 (281)
T ss_pred EEeCCHHHHHHHHHc-------------------CCCEEEeCCC----CHHHHHHHHHHhCC--Cce-EEEECCCCHHHH
Confidence 478999999998843 3569999943 22333333332221 233 778888889999
Q ss_pred HHHHHhccccc
Q 026239 123 SRCLEEGAEEF 133 (241)
Q Consensus 123 ~~~l~~Ga~~~ 133 (241)
......|+|-+
T Consensus 253 ~~yA~tGVD~I 263 (281)
T PRK06106 253 PAIAASGVDLI 263 (281)
T ss_pred HHHHhcCCCEE
Confidence 99999998644
No 291
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=68.15 E-value=13 Score=29.82 Aligned_cols=58 Identities=17% Similarity=0.241 Sum_probs=33.5
Q ss_pred ccEEEEeCCCCCCCH-------HHHHHHHHhcCC--CCCCcEEEEccCCChHHHHHHHHhcccccccC
Q 026239 78 VNLVITDYCMPGMTG-------YDLLKKIKESSS--LRDIPVVIMSSENVPSRISRCLEEGAEEFFLK 136 (241)
Q Consensus 78 ~dlIilD~~mp~~~g-------~~ll~~ir~~~~--~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~K 136 (241)
+|.|+++-.-|+.+| ++.++++++... ...+||++.. .-..+.+..+++.|++.++.-
T Consensus 127 ~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~G-GI~~env~~l~~~gad~iivg 193 (210)
T TIGR01163 127 VDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVDG-GVNDDNARELAEAGADILVAG 193 (210)
T ss_pred CCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEEC-CcCHHHHHHHHHcCCCEEEEC
Confidence 456666654454443 344555553211 0135665544 445788888899999977543
No 292
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=68.14 E-value=32 Score=28.25 Aligned_cols=72 Identities=14% Similarity=0.236 Sum_probs=52.0
Q ss_pred ECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCC---CHHHHHHHHHhcCCCCCCcEEEEccCCChHH
Q 026239 45 VDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGM---TGYDLLKKIKESSSLRDIPVVIMSSENVPSR 121 (241)
Q Consensus 45 ~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~---~g~~ll~~ir~~~~~~~ipvIils~~~~~~~ 121 (241)
..+..++++.+.....+ .++|+|+.--+. ..+++++.+.+.. .+||++-.+-.+.+.
T Consensus 29 ~~dp~~~a~~~~~~g~~-----------------~i~i~dl~~~~~~~~~n~~~~~~i~~~~---~~pv~~~ggi~~~~d 88 (232)
T TIGR03572 29 IGDPVNAARIYNAKGAD-----------------ELIVLDIDASKRGREPLFELISNLAEEC---FMPLTVGGGIRSLED 88 (232)
T ss_pred CCCHHHHHHHHHHcCCC-----------------EEEEEeCCCcccCCCCCHHHHHHHHHhC---CCCEEEECCCCCHHH
Confidence 34777777777544333 289999976542 3467888888753 689988888888888
Q ss_pred HHHHHHhcccccccC
Q 026239 122 ISRCLEEGAEEFFLK 136 (241)
Q Consensus 122 ~~~~l~~Ga~~~l~K 136 (241)
+.+++..|++..+.-
T Consensus 89 ~~~~~~~G~~~vilg 103 (232)
T TIGR03572 89 AKKLLSLGADKVSIN 103 (232)
T ss_pred HHHHHHcCCCEEEEC
Confidence 888999998877654
No 293
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=68.09 E-value=17 Score=29.83 Aligned_cols=32 Identities=13% Similarity=0.019 Sum_probs=25.9
Q ss_pred ceEEEEeCCHHHHHHHHHHhhcCCCEEEEECC
Q 026239 16 FHVLAVDDSIIDRKLIERLLKTSSYQVTTVDS 47 (241)
Q Consensus 16 ~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~ 47 (241)
++||++|........+...|...|+.+..+..
T Consensus 1 ~~ilv~d~~~~~~~~~~~~l~~~G~~~~~~~~ 32 (214)
T PRK07765 1 MRILVVDNYDSFVFNLVQYLGQLGVEAEVWRN 32 (214)
T ss_pred CeEEEEECCCcHHHHHHHHHHHcCCcEEEEEC
Confidence 58999998887777888889888988776543
No 294
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=68.08 E-value=28 Score=27.99 Aligned_cols=35 Identities=9% Similarity=0.170 Sum_probs=28.6
Q ss_pred ceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHH
Q 026239 16 FHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSK 50 (241)
Q Consensus 16 ~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~ 50 (241)
++|+|||-..-....+.+.|+..|+.+.++.+.++
T Consensus 1 m~i~iid~g~gn~~s~~~~l~~~g~~~~~v~~~~~ 35 (196)
T PRK13170 1 MNVVIIDTGCANLSSVKFAIERLGYEPVVSRDPDV 35 (196)
T ss_pred CeEEEEeCCCchHHHHHHHHHHCCCeEEEECCHHH
Confidence 57999997766777788899999999998887654
No 295
>PRK14098 glycogen synthase; Provisional
Probab=67.99 E-value=37 Score=31.50 Aligned_cols=68 Identities=9% Similarity=0.054 Sum_probs=40.0
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHH
Q 026239 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLM 151 (241)
Q Consensus 78 ~dlIilD~~mp~~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~ 151 (241)
.|+.++-. ....-|+..+..++. .+|+|+.......+.+......|..+|+..|.+.++|...+..++
T Consensus 382 aDi~l~PS-~~E~~Gl~~lEAma~-----G~ppVv~~~GGl~d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l 449 (489)
T PRK14098 382 LDMLLMPG-KIESCGMLQMFAMSY-----GTIPVAYAGGGIVETIEEVSEDKGSGFIFHDYTPEALVAKLGEAL 449 (489)
T ss_pred CCEEEeCC-CCCCchHHHHHHHhC-----CCCeEEecCCCCceeeecCCCCCCceeEeCCCCHHHHHHHHHHHH
Confidence 35766542 234457777776664 445555443333333322222367899999999999977666554
No 296
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=67.97 E-value=34 Score=29.40 Aligned_cols=40 Identities=23% Similarity=0.606 Sum_probs=32.2
Q ss_pred CHHHHHHHHHhcCCCCCCcEEEEccCC-ChHHHHHHHHhccccc
Q 026239 91 TGYDLLKKIKESSSLRDIPVVIMSSEN-VPSRISRCLEEGAEEF 133 (241)
Q Consensus 91 ~g~~ll~~ir~~~~~~~ipvIils~~~-~~~~~~~~l~~Ga~~~ 133 (241)
=|++.++.|++.. ++|+++..++. ..+.+.++++.|++.+
T Consensus 187 l~~~~L~~i~~~~---~iPlV~hG~SGI~~e~~~~~i~~G~~ki 227 (281)
T PRK06806 187 LRFDRLQEINDVV---HIPLVLHGGSGISPEDFKKCIQHGIRKI 227 (281)
T ss_pred cCHHHHHHHHHhc---CCCEEEECCCCCCHHHHHHHHHcCCcEE
Confidence 4789999999864 69999987544 6677888999998765
No 297
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=67.94 E-value=19 Score=31.22 Aligned_cols=54 Identities=17% Similarity=0.201 Sum_probs=34.9
Q ss_pred cccEEEEeCCCC-----------CCCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccc
Q 026239 77 GVNLVITDYCMP-----------GMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFF 134 (241)
Q Consensus 77 ~~dlIilD~~mp-----------~~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l 134 (241)
.+.+|+.|++-- +-...++++.+++. .+++.+.|+..........-..|.+.|+
T Consensus 125 ~~kvIvFDLDgTLi~~~~~v~irdPgV~EaL~~Lkek----GikLaIaTS~~Re~v~~~L~~lGLd~YF 189 (301)
T TIGR01684 125 PPHVVVFDLDSTLITDEEPVRIRDPRIYDSLTELKKR----GCILVLWSYGDRDHVVESMRKVKLDRYF 189 (301)
T ss_pred cceEEEEecCCCCcCCCCccccCCHHHHHHHHHHHHC----CCEEEEEECCCHHHHHHHHHHcCCCccc
Confidence 356999998531 12235788888875 5688888876544443334466887765
No 298
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=67.84 E-value=63 Score=26.02 Aligned_cols=59 Identities=20% Similarity=0.215 Sum_probs=41.0
Q ss_pred hcCcceEEEEeCCHHHHHHHHHHhhcCCC--EEE-EECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCC
Q 026239 12 AESQFHVLAVDDSIIDRKLIERLLKTSSY--QVT-TVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCM 87 (241)
Q Consensus 12 ~~~~~~ILiVdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~m 87 (241)
+....++++||-|......|..-++..++ .+. ...+...+|..+.. ...||+|++|=--
T Consensus 63 SRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~-----------------~~~FDlVflDPPy 124 (187)
T COG0742 63 SRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGT-----------------REPFDLVFLDPPY 124 (187)
T ss_pred hCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCC-----------------CCcccEEEeCCCC
Confidence 34467899999999999999998887773 333 34455566665532 2248899999533
No 299
>PRK10060 RNase II stability modulator; Provisional
Probab=67.68 E-value=34 Score=32.96 Aligned_cols=98 Identities=13% Similarity=0.186 Sum_probs=63.3
Q ss_pred HHHHhhcCCCEEEE--ECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCC----C-CCCHHHHHHHHHhcC
Q 026239 31 IERLLKTSSYQVTT--VDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCM----P-GMTGYDLLKKIKESS 103 (241)
Q Consensus 31 l~~~L~~~g~~v~~--~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~m----p-~~~g~~ll~~ir~~~ 103 (241)
+-..|+..|+.+.. +.+|...+..|... ++|.|=+|-.+ . +.....+++.|-...
T Consensus 546 ~l~~L~~~G~~ialDdfGtg~ssl~~L~~l------------------~~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a 607 (663)
T PRK10060 546 VIQQFSQLGAQVHLDDFGTGYSSLSQLARF------------------PIDAIKLDQSFVRDIHKQPVSQSLVRAIVAVA 607 (663)
T ss_pred HHHHHHHCCCEEEEECCCCchhhHHHHHhC------------------CCCEEEECHHHHhccccCcchHHHHHHHHHHH
Confidence 34557788988775 56777888888544 45588888533 2 234556666664332
Q ss_pred CCCCCcEEEEccCCChHHHHHHHHhccc---c-cccCCCCHHHHHHhh
Q 026239 104 SLRDIPVVIMSSENVPSRISRCLEEGAE---E-FFLKPVRLSDLNKLK 147 (241)
Q Consensus 104 ~~~~ipvIils~~~~~~~~~~~l~~Ga~---~-~l~KP~~~~~L~~~~ 147 (241)
..-++.||+ .+-.+.+....+...|++ | |+.||...+++...+
T Consensus 608 ~~lg~~viA-eGVEt~~q~~~l~~~G~d~~QGy~~~~P~~~~~~~~~l 654 (663)
T PRK10060 608 QALNLQVIA-EGVETAKEDAFLTKNGVNERQGFLFAKPMPAVAFERWY 654 (663)
T ss_pred HHCCCcEEE-ecCCCHHHHHHHHHcCCCEEecCccCCCCCHHHHHHHH
Confidence 222566654 455566677777889986 3 478999998886654
No 300
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=67.65 E-value=31 Score=30.11 Aligned_cols=41 Identities=24% Similarity=0.507 Sum_probs=33.2
Q ss_pred CHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHH-hcccccc
Q 026239 91 TGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLE-EGAEEFF 134 (241)
Q Consensus 91 ~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~-~Ga~~~l 134 (241)
..+++++++++.. ++|||...+-.+.+.+.++++ .|++++.
T Consensus 181 a~~~~i~~ik~~~---~iPVI~nGgI~s~~da~~~l~~~gadgVm 222 (321)
T PRK10415 181 AEYDSIRAVKQKV---SIPVIANGDITDPLKARAVLDYTGADALM 222 (321)
T ss_pred cChHHHHHHHHhc---CCcEEEeCCCCCHHHHHHHHhccCCCEEE
Confidence 3488999998854 699999888888999999997 5888763
No 301
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=67.31 E-value=30 Score=25.90 Aligned_cols=113 Identities=14% Similarity=0.132 Sum_probs=54.7
Q ss_pred hcCcceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCH-HHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCC
Q 026239 12 AESQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSG-SKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGM 90 (241)
Q Consensus 12 ~~~~~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~-~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~ 90 (241)
...+++|-||..-..- ..|...|...||.|..+.+- .+..+.+...-++.. . ......-...||+|+ ..||.
T Consensus 7 ~~~~l~I~iIGaGrVG-~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~---~-~~~~~~~~~aDlv~i--avpDd 79 (127)
T PF10727_consen 7 QAARLKIGIIGAGRVG-TALARALARAGHEVVGVYSRSPASAERAAAFIGAGA---I-LDLEEILRDADLVFI--AVPDD 79 (127)
T ss_dssp -----EEEEECTSCCC-CHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT---------TTGGGCC-SEEEE---S-CC
T ss_pred CCCccEEEEECCCHHH-HHHHHHHHHCCCeEEEEEeCCccccccccccccccc---c-cccccccccCCEEEE--EechH
Confidence 3457999999886543 45667788889998865432 222222222111100 0 000012345789998 45776
Q ss_pred CHHHHHHHHHhcCCCCCCcEEEEcc-CCChHHHHHHHHhccc
Q 026239 91 TGYDLLKKIKESSSLRDIPVVIMSS-ENVPSRISRCLEEGAE 131 (241)
Q Consensus 91 ~g~~ll~~ir~~~~~~~ipvIils~-~~~~~~~~~~l~~Ga~ 131 (241)
.--++++.|.....++.-.+|+=|+ ....+...-+.+.|+.
T Consensus 80 aI~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p~~~~Ga~ 121 (127)
T PF10727_consen 80 AIAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAPARERGAI 121 (127)
T ss_dssp HHHHHHHHHHCC--S-TT-EEEES-SS--GGGGHHHHHTT-E
T ss_pred HHHHHHHHHHHhccCCCCcEEEECCCCChHHhhhhHHHCCCe
Confidence 6667888888763333445666554 5555555566677774
No 302
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=67.14 E-value=55 Score=29.09 Aligned_cols=87 Identities=21% Similarity=0.261 Sum_probs=55.0
Q ss_pred HHHHHHhhcCCCEEE--EECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCC-----CCCCHHHHHHHHHh
Q 026239 29 KLIERLLKTSSYQVT--TVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCM-----PGMTGYDLLKKIKE 101 (241)
Q Consensus 29 ~~l~~~L~~~g~~v~--~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~m-----p~~~g~~ll~~ir~ 101 (241)
+.+..+-+..+.-|. .+.+.++|..... ..+|.|++.-+- .+...++.+..|+.
T Consensus 211 ~~l~~lr~~~~~PvivKgv~~~~dA~~a~~-------------------~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~ 271 (351)
T cd04737 211 ADIEFIAKISGLPVIVKGIQSPEDADVAIN-------------------AGADGIWVSNHGGRQLDGGPASFDSLPEIAE 271 (351)
T ss_pred HHHHHHHHHhCCcEEEecCCCHHHHHHHHH-------------------cCCCEEEEeCCCCccCCCCchHHHHHHHHHH
Confidence 444444444443333 3467777766653 234566663210 11234677888876
Q ss_pred cCCCCCCcEEEEccCCChHHHHHHHHhccccccc
Q 026239 102 SSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFL 135 (241)
Q Consensus 102 ~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~ 135 (241)
... .++|||+-.+-.....+.+++.+||+.+..
T Consensus 272 a~~-~~i~vi~dGGIr~g~Di~kaLalGA~~V~i 304 (351)
T cd04737 272 AVN-HRVPIIFDSGVRRGEHVFKALASGADAVAV 304 (351)
T ss_pred HhC-CCCeEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 432 369999999988999999999999998744
No 303
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=67.00 E-value=82 Score=27.05 Aligned_cols=64 Identities=16% Similarity=0.280 Sum_probs=42.4
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHHH
Q 026239 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMK 152 (241)
Q Consensus 79 dlIilD~~mp~~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~~ 152 (241)
|++++-.. .+.-|+.+++.+.. .+|||+..... ..+.+..|..+|+.+|-+.+++.+.+..++.
T Consensus 272 d~~v~ps~-~E~~~~~~~EAma~-----g~PvI~s~~~~----~~e~i~~~~~G~~~~~~~~~~l~~~i~~l~~ 335 (371)
T cd04962 272 DLFLLPSE-KESFGLAALEAMAC-----GVPVVASNAGG----IPEVVKHGETGFLVDVGDVEAMAEYALSLLE 335 (371)
T ss_pred CEEEeCCC-cCCCccHHHHHHHc-----CCCEEEeCCCC----chhhhcCCCceEEcCCCCHHHHHHHHHHHHh
Confidence 56665443 33446667776653 67888643322 3445677888999999999998776666654
No 304
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=66.92 E-value=5 Score=32.51 Aligned_cols=83 Identities=19% Similarity=0.271 Sum_probs=47.9
Q ss_pred HHHHHHhhcCCCEEEE--ECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCC----CCHHHHHHHHHhc
Q 026239 29 KLIERLLKTSSYQVTT--VDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPG----MTGYDLLKKIKES 102 (241)
Q Consensus 29 ~~l~~~L~~~g~~v~~--~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~----~~g~~ll~~ir~~ 102 (241)
..+.. |+..|+.+.. +..+...+..+..- .||.|-+|..+.. .....+++.|...
T Consensus 138 ~~l~~-l~~~G~~i~ld~~g~~~~~~~~l~~l------------------~~~~ikld~~~~~~~~~~~~~~~l~~l~~~ 198 (236)
T PF00563_consen 138 ENLRR-LRSLGFRIALDDFGSGSSSLEYLASL------------------PPDYIKLDGSLVRDLSDEEAQSLLQSLINL 198 (236)
T ss_dssp HHHHH-HHHCT-EEEEEEETSTCGCHHHHHHH------------------CGSEEEEEHHGHTTTTSHHHHHHHHHHHHH
T ss_pred HHHHH-HHhcCceeEeeeccCCcchhhhhhhc------------------ccccceeecccccccchhhHHHHHHHHHHH
Confidence 44554 6678987763 55555556655433 3558999887552 2234455544332
Q ss_pred CCCCCCcEEEEccCCChHHHHHHHHhccc
Q 026239 103 SSLRDIPVVIMSSENVPSRISRCLEEGAE 131 (241)
Q Consensus 103 ~~~~~ipvIils~~~~~~~~~~~l~~Ga~ 131 (241)
....++.| +.++-.+.+....+.+.|++
T Consensus 199 ~~~~~~~v-ia~gVe~~~~~~~l~~~G~~ 226 (236)
T PF00563_consen 199 AKSLGIKV-IAEGVESEEQLELLKELGVD 226 (236)
T ss_dssp HHHTT-EE-EEECE-SHHHHHHHHHTTES
T ss_pred hhcccccc-ceeecCCHHHHHHHHHcCCC
Confidence 22124444 46666778888889999987
No 305
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=66.89 E-value=52 Score=28.69 Aligned_cols=99 Identities=13% Similarity=0.069 Sum_probs=56.1
Q ss_pred EEEEeCCHHHHHHHHHH-------hhcCCC--EE-EEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCC-
Q 026239 18 VLAVDDSIIDRKLIERL-------LKTSSY--QV-TTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYC- 86 (241)
Q Consensus 18 ILiVdd~~~~~~~l~~~-------L~~~g~--~v-~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~- 86 (241)
|||-|.+....-.+... ++..++ .+ +.+++.+++.+++.... | .+..+|+|++|-.
T Consensus 173 vLIKdNHi~~~G~i~~av~~~r~~~~~~~~~~kIeVEv~tleea~ea~~~~~-~------------~~agaDiImLDnm~ 239 (308)
T PLN02716 173 VMIKDNHIAAAGGITNAVQSADKYLEEKGLSMKIEVETRTLEEVKEVLEYLS-D------------TKTSLTRVMLDNMV 239 (308)
T ss_pred EEEcHhHHHhhCCHHHHHHHHHHhhhhcCCCeeEEEEECCHHHHHHHHHhcc-c------------ccCCCCEEEeCCCc
Confidence 67766665443222222 223333 23 37889999999885110 0 1234679999954
Q ss_pred -CCC---CCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccc
Q 026239 87 -MPG---MTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEE 132 (241)
Q Consensus 87 -mp~---~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~ 132 (241)
-|. .+--++-+.+.... ....+-.|+.-..+.+......|+|-
T Consensus 240 ~~~~~~~~~~e~l~~av~~~~---~~~~lEaSGGIt~~ni~~yA~tGVD~ 286 (308)
T PLN02716 240 VPLENGDVDVSMLKEAVELIN---GRFETEASGNVTLDTVHKIGQTGVTY 286 (308)
T ss_pred ccccccCCCHHHHHHHHHhhC---CCceEEEECCCCHHHHHHHHHcCCCE
Confidence 121 13333333333222 22347788888899999888999864
No 306
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=66.89 E-value=51 Score=30.23 Aligned_cols=100 Identities=13% Similarity=0.057 Sum_probs=60.6
Q ss_pred hcCcceEEEEeCCHHHHHHHHHHhhcCCCE-EE-EECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCC
Q 026239 12 AESQFHVLAVDDSIIDRKLIERLLKTSSYQ-VT-TVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPG 89 (241)
Q Consensus 12 ~~~~~~ILiVdd~~~~~~~l~~~L~~~g~~-v~-~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~ 89 (241)
+....+|+-||-.+........-.+..|.. +. .+.+.++...... ....+|+||+|--=.|
T Consensus 312 A~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~-----------------~~~~~d~VvvDPPR~G 374 (432)
T COG2265 312 AKRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWW-----------------EGYKPDVVVVDPPRAG 374 (432)
T ss_pred cccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhcc-----------------ccCCCCEEEECCCCCC
Confidence 345678999999988888888877777754 55 4566666665542 1234679999842222
Q ss_pred CCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhccccc
Q 026239 90 MTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEF 133 (241)
Q Consensus 90 ~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~ 133 (241)
++ -++++.|.+..+ ..||-+ |-+-...+.++..+--.+|
T Consensus 375 ~~-~~~lk~l~~~~p---~~IvYV-SCNP~TlaRDl~~L~~~gy 413 (432)
T COG2265 375 AD-REVLKQLAKLKP---KRIVYV-SCNPATLARDLAILASTGY 413 (432)
T ss_pred CC-HHHHHHHHhcCC---CcEEEE-eCCHHHHHHHHHHHHhCCe
Confidence 22 368898887643 334444 4444444444443333444
No 307
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=66.63 E-value=26 Score=27.40 Aligned_cols=39 Identities=8% Similarity=0.161 Sum_probs=23.4
Q ss_pred ccccEEEEeCCCCCC----C-------HHHHHHHHHhcCCCCCCcEEEEccC
Q 026239 76 VGVNLVITDYCMPGM----T-------GYDLLKKIKESSSLRDIPVVIMSSE 116 (241)
Q Consensus 76 ~~~dlIilD~~mp~~----~-------g~~ll~~ir~~~~~~~ipvIils~~ 116 (241)
.++|+|++-+...+. + -.++++.++... ++.+|++++..
T Consensus 66 ~~pd~Vii~~G~ND~~~~~~~~~~~~~l~~li~~i~~~~--~~~~iiv~~~p 115 (191)
T cd01836 66 TRFDVAVISIGVNDVTHLTSIARWRKQLAELVDALRAKF--PGARVVVTAVP 115 (191)
T ss_pred CCCCEEEEEecccCcCCCCCHHHHHHHHHHHHHHHHhhC--CCCEEEEECCC
Confidence 467899984433332 1 124667777643 37888888753
No 308
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=66.55 E-value=32 Score=29.23 Aligned_cols=92 Identities=16% Similarity=0.209 Sum_probs=55.2
Q ss_pred eEEEEeCCHHHHHH----HHHHhhcCC--CEE-EEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCC
Q 026239 17 HVLAVDDSIIDRKL----IERLLKTSS--YQV-TTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPG 89 (241)
Q Consensus 17 ~ILiVdd~~~~~~~----l~~~L~~~g--~~v-~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~ 89 (241)
.|||.|++....-. +...=+..+ ..+ ..+++.+++++.+.. .+|.|.+|-.-|
T Consensus 150 ~ilikdnHi~~~G~~~~av~~~r~~~~~~~~Igvev~t~eea~~A~~~-------------------gaDyI~ld~~~~- 209 (265)
T TIGR00078 150 AVMIKDNHIAAAGSIEKAVKRARAAAPFALKIEVEVESLEEAEEAAEA-------------------GADIIMLDNMKP- 209 (265)
T ss_pred ceeeeccHHHHhCCHHHHHHHHHHhCCCCCeEEEEeCCHHHHHHHHHc-------------------CCCEEEECCCCH-
Confidence 46777777544322 222222233 223 478899999988742 356888886433
Q ss_pred CCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccc
Q 026239 90 MTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFF 134 (241)
Q Consensus 90 ~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l 134 (241)
+-++++.+... ..+||++ ++.-+.+.+....+.|++.+-
T Consensus 210 ----e~lk~~v~~~~-~~ipi~A-sGGI~~~ni~~~a~~Gvd~Is 248 (265)
T TIGR00078 210 ----EEIKEAVQLLK-GRVLLEA-SGGITLDNLEEYAETGVDVIS 248 (265)
T ss_pred ----HHHHHHHHHhc-CCCcEEE-ECCCCHHHHHHHHHcCCCEEE
Confidence 44555443221 1367654 555678889999999998763
No 309
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=66.49 E-value=28 Score=29.12 Aligned_cols=54 Identities=15% Similarity=0.249 Sum_probs=42.1
Q ss_pred cEEEEeCCCCCC-CH--HHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHh-----c-cccccc
Q 026239 79 NLVITDYCMPGM-TG--YDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEE-----G-AEEFFL 135 (241)
Q Consensus 79 dlIilD~~mp~~-~g--~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~-----G-a~~~l~ 135 (241)
.+|++|+.--|+ .| +++++.+++.. ++|||+-.+-.+.+.+.++.+. | +++.|.
T Consensus 160 ~ii~tdI~rdGt~~G~d~el~~~l~~~~---~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~gviv 222 (241)
T PRK14114 160 EIVHTEIEKDGTLQEHDFSLTRKIAIEA---EVKVFAAGGISSENSLKTAQRVHRETNGLLKGVIV 222 (241)
T ss_pred EEEEEeechhhcCCCcCHHHHHHHHHHC---CCCEEEECCCCCHHHHHHHHhcccccCCcEEEEEE
Confidence 399999987764 44 57888888753 7899998888888898888876 5 776654
No 310
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=66.40 E-value=7.7 Score=32.44 Aligned_cols=61 Identities=16% Similarity=0.219 Sum_probs=38.5
Q ss_pred cccccEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCC
Q 026239 75 EVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVR 139 (241)
Q Consensus 75 ~~~~dlIilD~~mp~~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~ 139 (241)
++.||++|+=---|...|-.-.+.+-... ++|.|++|...... ...+++..-.+||.-+.+
T Consensus 57 ~~~pdf~I~isPN~~~PGP~~ARE~l~~~---~iP~IvI~D~p~~k-~kd~l~~~g~GYIivk~D 117 (276)
T PF01993_consen 57 EWDPDFVIVISPNAAAPGPTKAREMLSAK---GIPCIVISDAPTKK-AKDALEEEGFGYIIVKAD 117 (276)
T ss_dssp HH--SEEEEE-S-TTSHHHHHHHHHHHHS---SS-EEEEEEGGGGG-GHHHHHHTT-EEEEETTS
T ss_pred hhCCCEEEEECCCCCCCCcHHHHHHHHhC---CCCEEEEcCCCchh-hHHHHHhcCCcEEEEecC
Confidence 34466888766566677887777776543 89999999865444 356787777788765544
No 311
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=66.17 E-value=59 Score=29.12 Aligned_cols=54 Identities=20% Similarity=0.285 Sum_probs=35.2
Q ss_pred ccccEEEEeCCC-------CCCCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccc
Q 026239 76 VGVNLVITDYCM-------PGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFF 134 (241)
Q Consensus 76 ~~~dlIilD~~m-------p~~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l 134 (241)
..+|+|+++-.. ...+-.++.+.+++. ++|||+ ..-.+.+.+..+++.||+.++
T Consensus 154 AGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~----~IPVI~-G~V~t~e~A~~~~~aGaDgV~ 214 (369)
T TIGR01304 154 AGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGEL----DVPVIA-GGVNDYTTALHLMRTGAAGVI 214 (369)
T ss_pred CCCCEEEEeccchhhhccCCCCCHHHHHHHHHHC----CCCEEE-eCCCCHHHHHHHHHcCCCEEE
Confidence 346688887321 233444444444432 689986 555667788889999999876
No 312
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=66.11 E-value=85 Score=28.00 Aligned_cols=94 Identities=11% Similarity=0.109 Sum_probs=54.5
Q ss_pred cceEEEEeCCHHHHHHHHHHhhcCCC-EEE-EECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCH
Q 026239 15 QFHVLAVDDSIIDRKLIERLLKTSSY-QVT-TVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTG 92 (241)
Q Consensus 15 ~~~ILiVdd~~~~~~~l~~~L~~~g~-~v~-~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g 92 (241)
..+|+.||-++...+..+.-++..+. .+. ...+..+.+... ...||+||+| |.-.|
T Consensus 255 ~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~-------------------~~~~D~vi~D---PPr~G 312 (374)
T TIGR02085 255 DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQ-------------------MSAPELVLVN---PPRRG 312 (374)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhc-------------------CCCCCEEEEC---CCCCC
Confidence 36799999999888888887776665 344 445555444221 1136799998 33333
Q ss_pred --HHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccC
Q 026239 93 --YDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLK 136 (241)
Q Consensus 93 --~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~K 136 (241)
.++++.|....+ .-|++.+.+....+.++... .+|-++
T Consensus 313 ~~~~~l~~l~~~~p----~~ivyvsc~p~TlaRDl~~L--~gy~l~ 352 (374)
T TIGR02085 313 IGKELCDYLSQMAP----KFILYSSCNAQTMAKDIAEL--SGYQIE 352 (374)
T ss_pred CcHHHHHHHHhcCC----CeEEEEEeCHHHHHHHHHHh--cCceEE
Confidence 467777765432 23444444444444444444 345444
No 313
>PLN02823 spermine synthase
Probab=66.09 E-value=56 Score=28.83 Aligned_cols=55 Identities=15% Similarity=0.192 Sum_probs=33.3
Q ss_pred cceEEEEeCCHHHHHHHHHHhhcC-----CCEEE-EECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCC
Q 026239 15 QFHVLAVDDSIIDRKLIERLLKTS-----SYQVT-TVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMP 88 (241)
Q Consensus 15 ~~~ILiVdd~~~~~~~l~~~L~~~-----g~~v~-~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp 88 (241)
..+|.+||=|+.+.+..++.+... +-.+. ...|+...++. ....||+||+|+.-|
T Consensus 127 ~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~-------------------~~~~yDvIi~D~~dp 187 (336)
T PLN02823 127 VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEK-------------------RDEKFDVIIGDLADP 187 (336)
T ss_pred CCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhh-------------------CCCCccEEEecCCCc
Confidence 356788888888877777776432 12333 34455444422 123589999997544
No 314
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=66.06 E-value=60 Score=27.94 Aligned_cols=42 Identities=12% Similarity=0.122 Sum_probs=34.7
Q ss_pred HHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhccccccc
Q 026239 93 YDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFL 135 (241)
Q Consensus 93 ~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~ 135 (241)
++.+.++++... .++|||...+-.+.+.+.+++.+||+.+..
T Consensus 239 l~~v~~~~~~~~-~~ipIig~GGI~~~~da~~~l~aGA~~V~i 280 (299)
T cd02940 239 LRAVSQIARAPE-PGLPISGIGGIESWEDAAEFLLLGASVVQV 280 (299)
T ss_pred HHHHHHHHHhcC-CCCcEEEECCCCCHHHHHHHHHcCCChheE
Confidence 678888887542 379999999999999999999999987643
No 315
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=66.00 E-value=71 Score=27.10 Aligned_cols=99 Identities=13% Similarity=0.231 Sum_probs=59.4
Q ss_pred eEEEEeCCHHHHHHHHHHhhcCCCEEEE--E-CCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCC--
Q 026239 17 HVLAVDDSIIDRKLIERLLKTSSYQVTT--V-DSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMT-- 91 (241)
Q Consensus 17 ~ILiVdd~~~~~~~l~~~L~~~g~~v~~--~-~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~-- 91 (241)
-++|.|=.......+...+...|...+. . .+..+-++.+...... .|-+= ...|.+
T Consensus 118 GlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~~~a~g------------------FiY~v-s~~GvTG~ 178 (259)
T PF00290_consen 118 GLIIPDLPPEESEELREAAKKHGLDLIPLVAPTTPEERIKKIAKQASG------------------FIYLV-SRMGVTGS 178 (259)
T ss_dssp EEEETTSBGGGHHHHHHHHHHTT-EEEEEEETTS-HHHHHHHHHH-SS------------------EEEEE-SSSSSSST
T ss_pred EEEEcCCChHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCc------------------EEEee-ccCCCCCC
Confidence 3566665556667777888888876552 2 3566666766543322 33321 122222
Q ss_pred -------HHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCC
Q 026239 92 -------GYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPV 138 (241)
Q Consensus 92 -------g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~ 138 (241)
-.++++.+|+.. ++||++=-+-.+++.+.... .|||+++.-..
T Consensus 179 ~~~~~~~l~~~i~~ik~~~---~~Pv~vGFGI~~~e~~~~~~-~~aDGvIVGSa 228 (259)
T PF00290_consen 179 RTELPDELKEFIKRIKKHT---DLPVAVGFGISTPEQAKKLA-AGADGVIVGSA 228 (259)
T ss_dssp TSSCHHHHHHHHHHHHHTT---SS-EEEESSS-SHHHHHHHH-TTSSEEEESHH
T ss_pred cccchHHHHHHHHHHHhhc---CcceEEecCCCCHHHHHHHH-ccCCEEEECHH
Confidence 246778888754 78998877777777776665 99999998753
No 316
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=65.83 E-value=49 Score=29.19 Aligned_cols=56 Identities=20% Similarity=0.323 Sum_probs=41.0
Q ss_pred ccccEEEEeCC-CC--------CCCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhccccc
Q 026239 76 VGVNLVITDYC-MP--------GMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEF 133 (241)
Q Consensus 76 ~~~dlIilD~~-mp--------~~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~ 133 (241)
...|.||..=. -. ..+.+.|+..+++... .+|||.-.+-.+...+..++..||++.
T Consensus 146 ~G~d~vI~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~~--~iPViAAGGI~dg~~i~AAlalGA~gV 210 (336)
T COG2070 146 AGADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAVD--GIPVIAAGGIADGRGIAAALALGADGV 210 (336)
T ss_pred CCCCEEEecCCcCCCcCCCCCCCccHHHHHHHHHHHhc--CCCEEEecCccChHHHHHHHHhccHHH
Confidence 34567776533 11 2233788888887652 299999999999999999999999875
No 317
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=65.78 E-value=77 Score=26.99 Aligned_cols=91 Identities=16% Similarity=0.178 Sum_probs=55.9
Q ss_pred eEEEEeCCHHHHHHHH----HHhhcCC--CEE-EEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCC
Q 026239 17 HVLAVDDSIIDRKLIE----RLLKTSS--YQV-TTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPG 89 (241)
Q Consensus 17 ~ILiVdd~~~~~~~l~----~~L~~~g--~~v-~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~ 89 (241)
.|||.|++....-.+. .+=+..+ ..+ ..+.+.+++.+.+.. .+|.|.+|-.
T Consensus 154 ~vlikdnHi~~~g~i~~~v~~~r~~~~~~~~Igvev~s~eea~~A~~~-------------------gaDyI~ld~~--- 211 (268)
T cd01572 154 AVLIKDNHIAAAGSITEAVRRARAAAPFTLKIEVEVETLEQLKEALEA-------------------GADIIMLDNM--- 211 (268)
T ss_pred eeeeehHHHHHhCCHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHc-------------------CCCEEEECCc---
Confidence 4677777654432222 2222233 223 478899998888732 3569989843
Q ss_pred CCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhccccc
Q 026239 90 MTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEF 133 (241)
Q Consensus 90 ~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~ 133 (241)
+.+.++++.+... .++|+++. +.-+.+.+....+.|++.+
T Consensus 212 --~~e~l~~~~~~~~-~~ipi~Ai-GGI~~~ni~~~a~~Gvd~I 251 (268)
T cd01572 212 --SPEELREAVALLK-GRVLLEAS-GGITLENIRAYAETGVDYI 251 (268)
T ss_pred --CHHHHHHHHHHcC-CCCcEEEE-CCCCHHHHHHHHHcCCCEE
Confidence 2566666665332 15776654 4556888889999999875
No 318
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=65.76 E-value=20 Score=31.46 Aligned_cols=56 Identities=16% Similarity=0.284 Sum_probs=39.4
Q ss_pred ccccEEEEeCCCCC-CCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccc
Q 026239 76 VGVNLVITDYCMPG-MTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFF 134 (241)
Q Consensus 76 ~~~dlIilD~~mp~-~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l 134 (241)
..+|+|.+|..... ..-.+++++|++..+ ++||++ ..-.+.+.+..+.++|||...
T Consensus 105 agv~~I~vd~~~G~~~~~~~~i~~ik~~~p--~v~Vi~-G~v~t~~~A~~l~~aGaD~I~ 161 (325)
T cd00381 105 AGVDVIVIDSAHGHSVYVIEMIKFIKKKYP--NVDVIA-GNVVTAEAARDLIDAGADGVK 161 (325)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHHHHHCC--CceEEE-CCCCCHHHHHHHHhcCCCEEE
Confidence 34679999875432 235788999998653 577765 344566778889999998765
No 319
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=65.63 E-value=66 Score=27.73 Aligned_cols=109 Identities=13% Similarity=0.212 Sum_probs=57.5
Q ss_pred ceEEEEe--CCHHH---HHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCC
Q 026239 16 FHVLAVD--DSIID---RKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGM 90 (241)
Q Consensus 16 ~~ILiVd--d~~~~---~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~ 90 (241)
.+|+|+- +.+.. ...+.+.|+..|+.+....+....+........+ .......+|+||+ -|.
T Consensus 6 ~~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~---------~~~~~~~~d~vi~----~GG 72 (291)
T PRK02155 6 KTVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALT---------PEEIGARADLAVV----LGG 72 (291)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccC---------hhHhccCCCEEEE----ECC
Confidence 3477763 33333 3455566677788877654332222110000000 0001124678776 366
Q ss_pred CHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHHHH
Q 026239 91 TGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMKT 153 (241)
Q Consensus 91 ~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~~~ 153 (241)
|| .+++.++.... .++|++-+. .|--+||. .++++++...+..+.++
T Consensus 73 DG-t~l~~~~~~~~-~~~pilGIn-------------~G~lGFL~-~~~~~~~~~~l~~~~~g 119 (291)
T PRK02155 73 DG-TMLGIGRQLAP-YGVPLIGIN-------------HGRLGFIT-DIPLDDMQETLPPMLAG 119 (291)
T ss_pred cH-HHHHHHHHhcC-CCCCEEEEc-------------CCCccccc-cCCHHHHHHHHHHHHcC
Confidence 76 45666665432 378887553 35557777 67778887777766544
No 320
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=65.53 E-value=29 Score=30.60 Aligned_cols=56 Identities=9% Similarity=0.115 Sum_probs=40.4
Q ss_pred cccEEEEeCCCCCC-CHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhccccccc
Q 026239 77 GVNLVITDYCMPGM-TGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFL 135 (241)
Q Consensus 77 ~~dlIilD~~mp~~-~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~ 135 (241)
.+|+|++|..-... .-++.+++||...+ + +.|+-..-...+....++++|||....
T Consensus 121 ~~d~iviD~AhGhs~~~i~~ik~ir~~~p--~-~~viaGNV~T~e~a~~Li~aGAD~ikV 177 (343)
T TIGR01305 121 QLKFICLDVANGYSEHFVEFVKLVREAFP--E-HTIMAGNVVTGEMVEELILSGADIVKV 177 (343)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHHhhCC--C-CeEEEecccCHHHHHHHHHcCCCEEEE
Confidence 47899999876543 34688999998643 4 344444466788888999999998753
No 321
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=65.52 E-value=51 Score=25.86 Aligned_cols=79 Identities=10% Similarity=0.146 Sum_probs=48.8
Q ss_pred CcceEEEEeCCHHHHHHHHHHhhcC--CCEEEEEC-------CHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEe
Q 026239 14 SQFHVLAVDDSIIDRKLIERLLKTS--SYQVTTVD-------SGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITD 84 (241)
Q Consensus 14 ~~~~ILiVdd~~~~~~~l~~~L~~~--g~~v~~~~-------~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD 84 (241)
...+|.++...+.....+...|+.. |..+.... +..+.++.+.... +|+|++-
T Consensus 45 ~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~~------------------pdiv~vg 106 (171)
T cd06533 45 KGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINASG------------------ADILFVG 106 (171)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHcC------------------CCEEEEE
Confidence 4688888988888888777766654 44444321 1223456665444 4599999
Q ss_pred CCCCCCCHHHHHHHHHhcCCCCCCcEEEEcc
Q 026239 85 YCMPGMTGYDLLKKIKESSSLRDIPVVIMSS 115 (241)
Q Consensus 85 ~~mp~~~g~~ll~~ir~~~~~~~ipvIils~ 115 (241)
+.+|... .++.+.+... +.+|++..+
T Consensus 107 lG~PkQE--~~~~~~~~~l---~~~v~~~vG 132 (171)
T cd06533 107 LGAPKQE--LWIARHKDRL---PVPVAIGVG 132 (171)
T ss_pred CCCCHHH--HHHHHHHHHC---CCCEEEEec
Confidence 9888755 4556666543 345655443
No 322
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=65.37 E-value=82 Score=26.43 Aligned_cols=65 Identities=12% Similarity=0.277 Sum_probs=43.0
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHHH
Q 026239 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMK 152 (241)
Q Consensus 79 dlIilD~~mp~~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~~ 152 (241)
|++|+-....+.-|+.+++.+.. .+|||...... ..+.+..|..+++.++.+.+++.+.+..++.
T Consensus 264 d~~i~ps~~~e~~~~~~~Ea~a~-----G~Pvi~~~~~~----~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~ 328 (359)
T cd03823 264 DVLVVPSIWPENFPLVIREALAA-----GVPVIASDIGG----MAELVRDGVNGLLFPPGDAEDLAAALERLID 328 (359)
T ss_pred CEEEEcCcccCCCChHHHHHHHC-----CCCEEECCCCC----HHHHhcCCCcEEEECCCCHHHHHHHHHHHHh
Confidence 57665433334456677777764 67887533222 3345667778999999999999877777664
No 323
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=65.34 E-value=50 Score=26.51 Aligned_cols=52 Identities=15% Similarity=0.248 Sum_probs=36.0
Q ss_pred ccccEEEEeCCCCCC-------CHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhc-cccc
Q 026239 76 VGVNLVITDYCMPGM-------TGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEG-AEEF 133 (241)
Q Consensus 76 ~~~dlIilD~~mp~~-------~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~G-a~~~ 133 (241)
...|.+++|..-++. -++++++.++ ..+|+++..+ -+++.+..+++.| ++++
T Consensus 119 ~~aD~il~dt~~~~~~Gg~g~~~~~~~l~~~~-----~~~PvilaGG-I~~~Nv~~~i~~~~~~gv 178 (203)
T cd00405 119 GEVDAILLDSKSGGGGGGTGKTFDWSLLRGLA-----SRKPVILAGG-LTPDNVAEAIRLVRPYGV 178 (203)
T ss_pred ccCCEEEEcCCCCCCCCCCcceEChHHhhccc-----cCCCEEEECC-CChHHHHHHHHhcCCCEE
Confidence 346889999876532 2466777665 1679886655 4788888888888 6554
No 324
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=65.31 E-value=39 Score=24.88 Aligned_cols=41 Identities=24% Similarity=0.420 Sum_probs=22.3
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHH
Q 026239 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISR 124 (241)
Q Consensus 78 ~dlIilD~~mp~~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~ 124 (241)
+| |++|+..|. ..++.++...+. .+|+|+-|...+.+....
T Consensus 68 ~D-VvIDfT~p~-~~~~~~~~~~~~----g~~~ViGTTG~~~~~~~~ 108 (124)
T PF01113_consen 68 AD-VVIDFTNPD-AVYDNLEYALKH----GVPLVIGTTGFSDEQIDE 108 (124)
T ss_dssp -S-EEEEES-HH-HHHHHHHHHHHH----T-EEEEE-SSSHHHHHHH
T ss_pred CC-EEEEcCChH-HhHHHHHHHHhC----CCCEEEECCCCCHHHHHH
Confidence 55 677888664 345566666554 578888666554444433
No 325
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=65.22 E-value=23 Score=25.88 Aligned_cols=50 Identities=14% Similarity=0.230 Sum_probs=28.0
Q ss_pred ccccEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcc
Q 026239 76 VGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGA 130 (241)
Q Consensus 76 ~~~dlIilD~~mp~~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga 130 (241)
..+|++++ ..|.....++++.+..... --+++.++....+....|.+.|.
T Consensus 54 ~~iDlavv--~~~~~~~~~~v~~~~~~g~---~~v~~~~g~~~~~~~~~a~~~gi 103 (116)
T PF13380_consen 54 EPIDLAVV--CVPPDKVPEIVDEAAALGV---KAVWLQPGAESEELIEAAREAGI 103 (116)
T ss_dssp ST-SEEEE---S-HHHHHHHHHHHHHHT----SEEEE-TTS--HHHHHHHHHTT-
T ss_pred CCCCEEEE--EcCHHHHHHHHHHHHHcCC---CEEEEEcchHHHHHHHHHHHcCC
Confidence 45777776 6677778888888887642 24555666555555555566554
No 326
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=65.06 E-value=27 Score=28.20 Aligned_cols=68 Identities=16% Similarity=0.142 Sum_probs=46.6
Q ss_pred CCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCC--CCHHHHHHHHHhcCCCCCCcEEEEccC
Q 026239 39 SYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPG--MTGYDLLKKIKESSSLRDIPVVIMSSE 116 (241)
Q Consensus 39 g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~--~~g~~ll~~ir~~~~~~~ipvIils~~ 116 (241)
++.|....+.+++.+.+.. ..|+|=+|...-. .+-.++++.||+.. .++|..-
T Consensus 45 ~~~V~ITPT~~ev~~l~~a-------------------GadIIAlDaT~R~Rp~~l~~li~~i~~~~------~l~MADi 99 (192)
T PF04131_consen 45 DSDVYITPTLKEVDALAEA-------------------GADIIALDATDRPRPETLEELIREIKEKY------QLVMADI 99 (192)
T ss_dssp TSS--BS-SHHHHHHHHHC-------------------T-SEEEEE-SSSS-SS-HHHHHHHHHHCT------SEEEEE-
T ss_pred CCCeEECCCHHHHHHHHHc-------------------CCCEEEEecCCCCCCcCHHHHHHHHHHhC------cEEeeec
Confidence 4567777888888877742 3569999986622 77889999999842 6778888
Q ss_pred CChHHHHHHHHhccc
Q 026239 117 NVPSRISRCLEEGAE 131 (241)
Q Consensus 117 ~~~~~~~~~l~~Ga~ 131 (241)
.+.+....|.++|+|
T Consensus 100 st~ee~~~A~~~G~D 114 (192)
T PF04131_consen 100 STLEEAINAAELGFD 114 (192)
T ss_dssp SSHHHHHHHHHTT-S
T ss_pred CCHHHHHHHHHcCCC
Confidence 888999999999975
No 327
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=64.95 E-value=89 Score=27.01 Aligned_cols=109 Identities=17% Similarity=0.209 Sum_probs=57.2
Q ss_pred ceEEEEe--CCHH---HHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCC
Q 026239 16 FHVLAVD--DSII---DRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGM 90 (241)
Q Consensus 16 ~~ILiVd--d~~~---~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~ 90 (241)
.+|.||- +.+. ....+...|+..|+++.......+.+..-.....+ .......+|+||+ -|.
T Consensus 5 ~~v~iv~~~~k~~a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~---------~~~~~~~~d~vi~----~GG 71 (295)
T PRK01231 5 RNIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILDEETAEVLPGHGLQTVS---------RKLLGEVCDLVIV----VGG 71 (295)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccc---------hhhcccCCCEEEE----EeC
Confidence 3577773 3333 34455666777888887655433222100000000 0001124667766 356
Q ss_pred CHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHHHH
Q 026239 91 TGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMKT 153 (241)
Q Consensus 91 ~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~~~ 153 (241)
|| .+++.++... ..++||+-+.. |-.+|+. .++++++...+..+++.
T Consensus 72 DG-t~l~~~~~~~-~~~~Pvlgin~-------------G~lGFl~-~~~~~~~~~~l~~~~~g 118 (295)
T PRK01231 72 DG-SLLGAARALA-RHNVPVLGINR-------------GRLGFLT-DIRPDELEFKLAEVLDG 118 (295)
T ss_pred cH-HHHHHHHHhc-CCCCCEEEEeC-------------Ccccccc-cCCHHHHHHHHHHHHcC
Confidence 76 3445554432 24789886543 5556774 67888888777777644
No 328
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=64.94 E-value=1.1e+02 Score=27.56 Aligned_cols=108 Identities=12% Similarity=0.143 Sum_probs=62.8
Q ss_pred cceEEEEeCCHHHHHHHHHHhhcCCC--EEEEEC--CHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCC--
Q 026239 15 QFHVLAVDDSIIDRKLIERLLKTSSY--QVTTVD--SGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMP-- 88 (241)
Q Consensus 15 ~~~ILiVdd~~~~~~~l~~~L~~~g~--~v~~~~--~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp-- 88 (241)
.+++.||.+.+. +..++..++..|. .|.... +.++..+++.. .|+.++-....
T Consensus 253 ~~~l~ivG~G~~-~~~l~~~~~~~~l~~~V~~~G~~~~~el~~~l~~--------------------aDv~v~pS~~~~~ 311 (406)
T PRK15427 253 AFRYRILGIGPW-ERRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLDD--------------------ADVFLLPSVTGAD 311 (406)
T ss_pred CEEEEEEECchh-HHHHHHHHHHcCCCCeEEEeCCCCHHHHHHHHHh--------------------CCEEEECCccCCC
Confidence 456667766543 3445555555543 233322 34455555532 35666543221
Q ss_pred -CCC--HHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHHH
Q 026239 89 -GMT--GYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMK 152 (241)
Q Consensus 89 -~~~--g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~~ 152 (241)
+.+ |..+++.+.. .+|||...... +.+.+..|..+|+..|-+.++|...+..++.
T Consensus 312 g~~Eg~p~~llEAma~-----G~PVI~t~~~g----~~E~v~~~~~G~lv~~~d~~~la~ai~~l~~ 369 (406)
T PRK15427 312 GDMEGIPVALMEAMAV-----GIPVVSTLHSG----IPELVEADKSGWLVPENDAQALAQRLAAFSQ 369 (406)
T ss_pred CCccCccHHHHHHHhC-----CCCEEEeCCCC----chhhhcCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 123 4556666653 67888643322 3345677889999999999999877777665
No 329
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=64.90 E-value=94 Score=31.93 Aligned_cols=110 Identities=15% Similarity=0.108 Sum_probs=60.4
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhcCCCE-------------EEEECCHHHHHHHhcccCCCCCCCCCCCCCCccccccc
Q 026239 13 ESQFHVLAVDDSIIDRKLIERLLKTSSYQ-------------VTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVN 79 (241)
Q Consensus 13 ~~~~~ILiVdd~~~~~~~l~~~L~~~g~~-------------v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~d 79 (241)
..+.+|+|+.--..-+..+..+....++. |++++...+..+.+....+ .+.
T Consensus 567 ~~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~----------------~~~ 630 (1042)
T PLN02819 567 KKSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIE----------------NAE 630 (1042)
T ss_pred ccCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcC----------------CCc
Confidence 44678999998766666555555444444 6666644333333322111 123
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhh
Q 026239 80 LVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLK 147 (241)
Q Consensus 80 lIilD~~mp~~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~ 147 (241)
.+-+|+. |--++.+.++. .++-|+.+........+..|+++|.+-+..| +..++...+.
T Consensus 631 ~v~lDv~----D~e~L~~~v~~----~DaVIsalP~~~H~~VAkaAieaGkHvv~ek-y~~~e~~~L~ 689 (1042)
T PLN02819 631 AVQLDVS----DSESLLKYVSQ----VDVVISLLPASCHAVVAKACIELKKHLVTAS-YVSEEMSALD 689 (1042)
T ss_pred eEEeecC----CHHHHHHhhcC----CCEEEECCCchhhHHHHHHHHHcCCCEEECc-CCHHHHHHHH
Confidence 5666652 33345554443 1443333333445677788889998766666 5555554443
No 330
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]
Probab=64.88 E-value=32 Score=31.26 Aligned_cols=73 Identities=26% Similarity=0.296 Sum_probs=58.3
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhcCCCEEE-EECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCC
Q 026239 13 ESQFHVLAVDDSIIDRKLIERLLKTSSYQVT-TVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMT 91 (241)
Q Consensus 13 ~~~~~ILiVdd~~~~~~~l~~~L~~~g~~v~-~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~ 91 (241)
.....|||+.-..-....+.+.|...||.|. .+.+..++..+++.. ..|....+.+.+..+
T Consensus 77 ~~~~~VlVvGatG~vG~~iv~~llkrgf~vra~VRd~~~a~~~~~~~------------------~~d~~~~~v~~~~~~ 138 (411)
T KOG1203|consen 77 KKPTTVLVVGATGKVGRRIVKILLKRGFSVRALVRDEQKAEDLLGVF------------------FVDLGLQNVEADVVT 138 (411)
T ss_pred CCCCeEEEecCCCchhHHHHHHHHHCCCeeeeeccChhhhhhhhccc------------------ccccccceeeecccc
Confidence 4468899999999999999999998999887 678888888887521 234677777777888
Q ss_pred HHHHHHHHHhcC
Q 026239 92 GYDLLKKIKESS 103 (241)
Q Consensus 92 g~~ll~~ir~~~ 103 (241)
+.+.+..+.+..
T Consensus 139 ~~d~~~~~~~~~ 150 (411)
T KOG1203|consen 139 AIDILKKLVEAV 150 (411)
T ss_pred ccchhhhhhhhc
Confidence 888888888754
No 331
>PRK04457 spermidine synthase; Provisional
Probab=64.86 E-value=85 Score=26.47 Aligned_cols=71 Identities=6% Similarity=0.037 Sum_probs=45.0
Q ss_pred CcceEEEEeCCHHHHHHHHHHhhcCC--CEEE-EECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCC-
Q 026239 14 SQFHVLAVDDSIIDRKLIERLLKTSS--YQVT-TVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPG- 89 (241)
Q Consensus 14 ~~~~ILiVdd~~~~~~~l~~~L~~~g--~~v~-~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~- 89 (241)
...+|.+||=|+......++.+...+ -.+. ...|+.+.+... ...||+||+|..-..
T Consensus 89 p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~-------------------~~~yD~I~~D~~~~~~ 149 (262)
T PRK04457 89 PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVH-------------------RHSTDVILVDGFDGEG 149 (262)
T ss_pred CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhC-------------------CCCCCEEEEeCCCCCC
Confidence 35789999999998888888775432 3444 446666655422 125889999963221
Q ss_pred ----CCHHHHHHHHHhcC
Q 026239 90 ----MTGYDLLKKIKESS 103 (241)
Q Consensus 90 ----~~g~~ll~~ir~~~ 103 (241)
..-.++++.++..-
T Consensus 150 ~~~~l~t~efl~~~~~~L 167 (262)
T PRK04457 150 IIDALCTQPFFDDCRNAL 167 (262)
T ss_pred CccccCcHHHHHHHHHhc
Confidence 12357777777643
No 332
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=64.68 E-value=33 Score=28.39 Aligned_cols=90 Identities=19% Similarity=0.283 Sum_probs=57.8
Q ss_pred HHHHHHHHHhhcCCCEEEEEC---CHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCC-CCH-HHHHHHHH
Q 026239 26 IDRKLIERLLKTSSYQVTTVD---SGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPG-MTG-YDLLKKIK 100 (241)
Q Consensus 26 ~~~~~l~~~L~~~g~~v~~~~---~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~-~~g-~~ll~~ir 100 (241)
+=..++..+|...||+|+-.. ..++.++......| |+|-+..-|-. |.+ -+++..|+
T Consensus 119 IGk~iV~~ml~~aGfevidLG~dvP~e~fve~a~e~k~------------------d~v~~SalMTttm~~~~~viE~L~ 180 (227)
T COG5012 119 IGKNIVATMLEAAGFEVIDLGRDVPVEEFVEKAKELKP------------------DLVSMSALMTTTMIGMKDVIELLK 180 (227)
T ss_pred HHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHHHcCC------------------cEEechHHHHHHHHHHHHHHHHHH
Confidence 334667788888999998543 35667777755544 48887766653 333 35778888
Q ss_pred hcCCCCCCcEEEEcc-CCChHHHHHHHHhcccccccCC
Q 026239 101 ESSSLRDIPVVIMSS-ENVPSRISRCLEEGAEEFFLKP 137 (241)
Q Consensus 101 ~~~~~~~ipvIils~-~~~~~~~~~~l~~Ga~~~l~KP 137 (241)
+.+. .-||+++.+ ...... -+-+.|||.|..-+
T Consensus 181 eeGi--Rd~v~v~vGGApvtq~--~a~~iGAD~~~~dA 214 (227)
T COG5012 181 EEGI--RDKVIVMVGGAPVTQD--WADKIGADAYAEDA 214 (227)
T ss_pred HcCC--ccCeEEeecCccccHH--HHHHhCCCccCcCH
Confidence 8765 557777744 323332 34568999886544
No 333
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=64.60 E-value=21 Score=28.99 Aligned_cols=57 Identities=11% Similarity=0.242 Sum_probs=31.1
Q ss_pred EeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHH
Q 026239 83 TDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDL 143 (241)
Q Consensus 83 lD~~mp~~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L 143 (241)
+.+.+..-+++++++.+++..+ ++ +|-...--+.+.+..++++||+ |+.-|.-..++
T Consensus 37 iEiT~~t~~a~~~I~~l~~~~p--~~-~vGAGTV~~~e~a~~a~~aGA~-FivSP~~~~~v 93 (196)
T PF01081_consen 37 IEITLRTPNALEAIEALRKEFP--DL-LVGAGTVLTAEQAEAAIAAGAQ-FIVSPGFDPEV 93 (196)
T ss_dssp EEEETTSTTHHHHHHHHHHHHT--TS-EEEEES--SHHHHHHHHHHT-S-EEEESS--HHH
T ss_pred EEEecCCccHHHHHHHHHHHCC--CC-eeEEEeccCHHHHHHHHHcCCC-EEECCCCCHHH
Confidence 3444444567777777776543 42 2333344567777888888884 66666544444
No 334
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=64.60 E-value=40 Score=29.23 Aligned_cols=67 Identities=10% Similarity=0.074 Sum_probs=42.5
Q ss_pred cceEEEEeCCHHHHHHHHHHhhcCCCE-EE-EECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCH
Q 026239 15 QFHVLAVDDSIIDRKLIERLLKTSSYQ-VT-TVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTG 92 (241)
Q Consensus 15 ~~~ILiVdd~~~~~~~l~~~L~~~g~~-v~-~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g 92 (241)
..+|+.||-++...+..+..++..|.. +. ...+..+.+... ...||+||+| |...|
T Consensus 195 ~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~-------------------~~~~D~Vv~d---PPr~G 252 (315)
T PRK03522 195 GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQ-------------------GEVPDLVLVN---PPRRG 252 (315)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhc-------------------CCCCeEEEEC---CCCCC
Confidence 468999999988888887777766652 43 345554433211 1237899999 33343
Q ss_pred --HHHHHHHHhcC
Q 026239 93 --YDLLKKIKESS 103 (241)
Q Consensus 93 --~~ll~~ir~~~ 103 (241)
-++++.|....
T Consensus 253 ~~~~~~~~l~~~~ 265 (315)
T PRK03522 253 IGKELCDYLSQMA 265 (315)
T ss_pred ccHHHHHHHHHcC
Confidence 36777777643
No 335
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=64.58 E-value=32 Score=27.54 Aligned_cols=102 Identities=26% Similarity=0.349 Sum_probs=53.3
Q ss_pred ceEEEEeCCHHHHHHHHHHhhcC--CC-------------EEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccE
Q 026239 16 FHVLAVDDSIIDRKLIERLLKTS--SY-------------QVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNL 80 (241)
Q Consensus 16 ~~ILiVdd~~~~~~~l~~~L~~~--g~-------------~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dl 80 (241)
-+..||..-+.-++++.+++..+ |+ .|..+++.++|++.+.... ...|-+
T Consensus 43 ~~yyiVtPl~~Q~~l~~ril~hW~~G~G~~yNp~R~eAl~~v~~~~sle~a~~~I~~~~---------------G~~P~~ 107 (185)
T PF09936_consen 43 KGYYIVTPLEAQRELAERILGHWQEGYGAEYNPDRKEALSLVRVVDSLEEAIEDIEEEE---------------GKRPLL 107 (185)
T ss_dssp SEEEEE---HHHHHHHHHHHHHHHTSGGGGT-SSSHHHHTTEEEESSHHHHHHHHHHHH---------------SS--EE
T ss_pred cCEEEecchHHHHHHHHHHHHhcccCCCcCcCcCHHHHHhHhccHhhHHHHHHHHHHHh---------------CCCCEE
Confidence 45688888888888888888532 21 2678999999999987532 234569
Q ss_pred EEEeCC-CCCCCHHHHHHHHHhcCCCCCCcEEEE--ccCCChHHHHHHHHhcccccccCCCCH
Q 026239 81 VITDYC-MPGMTGYDLLKKIKESSSLRDIPVVIM--SSENVPSRISRCLEEGAEEFFLKPVRL 140 (241)
Q Consensus 81 IilD~~-mp~~~g~~ll~~ir~~~~~~~ipvIil--s~~~~~~~~~~~l~~Ga~~~l~KP~~~ 140 (241)
|.+|.. -|+.-++.-+++.-... +-|++++ |+..-.+.+ + ...||++.|+.-
T Consensus 108 v~TsAr~~~~~is~~~lr~~l~~~---~~P~LllFGTGwGL~~ev---~--~~~D~iLePI~g 162 (185)
T PF09936_consen 108 VATSARKYPNTISYAELRRMLEEE---DRPVLLLFGTGWGLAPEV---M--EQCDYILEPIRG 162 (185)
T ss_dssp EE--SS--SS-B-HHHHHHHHHH-----S-EEEEE--TT---HHH---H--TT-SEEB--TTT
T ss_pred EEecCcCCCCCcCHHHHHHHHhcc---CCeEEEEecCCCCCCHHH---H--HhcCeeEccccc
Confidence 999988 44544565555544222 4466555 444433333 2 245899999753
No 336
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=64.46 E-value=41 Score=27.79 Aligned_cols=41 Identities=22% Similarity=0.503 Sum_probs=33.6
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHh-ccccccc
Q 026239 92 GYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEE-GAEEFFL 135 (241)
Q Consensus 92 g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~-Ga~~~l~ 135 (241)
.+++++.+++.. ++|||+..+-.+.+.+.++++. |+++++.
T Consensus 181 ~~~~i~~i~~~~---~~pvia~GGi~~~~di~~~l~~~g~dgv~v 222 (243)
T cd04731 181 DLELIRAVSSAV---NIPVIASGGAGKPEHFVEAFEEGGADAALA 222 (243)
T ss_pred CHHHHHHHHhhC---CCCEEEeCCCCCHHHHHHHHHhCCCCEEEE
Confidence 478888888753 7999988888889999999987 8987754
No 337
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=64.28 E-value=87 Score=26.93 Aligned_cols=45 Identities=18% Similarity=0.166 Sum_probs=30.5
Q ss_pred CCcEEEEccCCChHHHHHHHHhcccccccCCC--CHHHHHHhhHHHH
Q 026239 107 DIPVVIMSSENVPSRISRCLEEGAEEFFLKPV--RLSDLNKLKPHLM 151 (241)
Q Consensus 107 ~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~--~~~~L~~~~~~l~ 151 (241)
++-+|......-.+.+..|+++|..=|+-||+ +.++...++....
T Consensus 69 D~V~Iatp~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~ 115 (342)
T COG0673 69 DAVYIATPNALHAELALAALEAGKHVLCEKPLALTLEEAEELVELAR 115 (342)
T ss_pred CEEEEcCCChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHH
Confidence 33333333345677888999999999999997 4666665554443
No 338
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=64.24 E-value=43 Score=31.33 Aligned_cols=29 Identities=21% Similarity=0.216 Sum_probs=25.6
Q ss_pred CCcEEEEccCCChHHHHHHHHhccccccc
Q 026239 107 DIPVVIMSSENVPSRISRCLEEGAEEFFL 135 (241)
Q Consensus 107 ~ipvIils~~~~~~~~~~~l~~Ga~~~l~ 135 (241)
.+|||+-++-.....+..|+.+||+..+.
T Consensus 352 ~~~viadgGir~~gdi~KAla~GA~~vm~ 380 (502)
T PRK07107 352 YIPICSDGGIVYDYHMTLALAMGADFIML 380 (502)
T ss_pred cceEEEcCCCCchhHHHHHHHcCCCeeee
Confidence 48999999988899999999999997754
No 339
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=63.51 E-value=94 Score=26.50 Aligned_cols=107 Identities=11% Similarity=0.127 Sum_probs=50.8
Q ss_pred cceEEEEeCCHH---HHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCC
Q 026239 15 QFHVLAVDDSII---DRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMT 91 (241)
Q Consensus 15 ~~~ILiVdd~~~---~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~ 91 (241)
..+|.+++-|.. ....+....+..|+.+..+.+..+..+.+.... ....+|+||+|.-=-.-.
T Consensus 103 ~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~--------------~~~~~D~ViIDt~Gr~~~ 168 (270)
T PRK06731 103 KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK--------------EEARVDYILIDTAGKNYR 168 (270)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHH--------------hcCCCCEEEEECCCCCcC
Confidence 456777766543 333344455556777776666544433332110 112478999997422211
Q ss_pred HHHHHHHHHhcC--CCCCCcEEEEccCCChHHHHHH----HHhccccccc
Q 026239 92 GYDLLKKIKESS--SLRDIPVVIMSSENVPSRISRC----LEEGAEEFFL 135 (241)
Q Consensus 92 g~~ll~~ir~~~--~~~~ipvIils~~~~~~~~~~~----l~~Ga~~~l~ 135 (241)
..+.++.+++.. ..++-.++++++.......... -..+.+++|.
T Consensus 169 ~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~~f~~~~~~~~I~ 218 (270)
T PRK06731 169 ASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVF 218 (270)
T ss_pred CHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHHHHhCCCCCCEEEE
Confidence 233444443211 1123346667654433333222 2345555544
No 340
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=63.51 E-value=64 Score=24.98 Aligned_cols=50 Identities=16% Similarity=0.279 Sum_probs=34.5
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhccccccc
Q 026239 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFL 135 (241)
Q Consensus 78 ~dlIilD~~mp~~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~ 135 (241)
++.+.+++.. -+-.+++.+++. .+++.+.|-. +.+....+++.|++++++
T Consensus 138 ~~~v~~~~~~---~~~~~i~~~~~~----g~~v~~wtvn-~~~~~~~~~~~GVdgI~T 187 (189)
T cd08556 138 ADAVNPHYKL---LTPELVRAAHAA----GLKVYVWTVN-DPEDARRLLALGVDGIIT 187 (189)
T ss_pred CeEEccChhh---CCHHHHHHHHHc----CCEEEEEcCC-CHHHHHHHHHCCCCEEec
Confidence 3444444432 235778888874 6788888764 577888899999998765
No 341
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=63.41 E-value=77 Score=27.11 Aligned_cols=107 Identities=20% Similarity=0.244 Sum_probs=55.8
Q ss_pred ceEEEEe--CC---HHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCC
Q 026239 16 FHVLAVD--DS---IIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGM 90 (241)
Q Consensus 16 ~~ILiVd--d~---~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~ 90 (241)
|||.||- +. ......+..+|+..|+.+....+..+.+......... ......+|+||+ -|.
T Consensus 1 m~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~----------~~~~~~~d~vi~----iGG 66 (277)
T PRK03708 1 MRFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDSETYEHLPEFSEEDVL----------PLEEMDVDFIIA----IGG 66 (277)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccc----------cccccCCCEEEE----EeC
Confidence 4666662 22 2234456666777888888754332222100000000 001124667776 366
Q ss_pred CHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHHHH
Q 026239 91 TGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMKT 153 (241)
Q Consensus 91 ~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~~~ 153 (241)
|| .+++.++ ... .++||+.+.. |-.+|+. .++++++...+..+.++
T Consensus 67 DG-TlL~a~~-~~~-~~~pi~gIn~-------------G~lGFl~-~~~~~~~~~~l~~i~~g 112 (277)
T PRK03708 67 DG-TILRIEH-KTK-KDIPILGINM-------------GTLGFLT-EVEPEETFFALSRLLEG 112 (277)
T ss_pred cH-HHHHHHH-hcC-CCCeEEEEeC-------------CCCCccc-cCCHHHHHHHHHHHHcC
Confidence 77 3556666 332 3789887764 3335555 56677777766666544
No 342
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=63.27 E-value=21 Score=31.35 Aligned_cols=55 Identities=16% Similarity=0.187 Sum_probs=40.7
Q ss_pred ccEEEEeCCCCC-CCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhccccccc
Q 026239 78 VNLVITDYCMPG-MTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFL 135 (241)
Q Consensus 78 ~dlIilD~~mp~-~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~ 135 (241)
.|+|++|..-.. ..-++.+++||+.. ..|+|+...-...+.+..++++||+.+..
T Consensus 109 ~d~i~~D~ahg~s~~~~~~i~~i~~~~---p~~~vi~GnV~t~e~a~~l~~aGad~I~V 164 (321)
T TIGR01306 109 PEYITIDIAHGHSNSVINMIKHIKTHL---PDSFVIAGNVGTPEAVRELENAGADATKV 164 (321)
T ss_pred CCEEEEeCccCchHHHHHHHHHHHHhC---CCCEEEEecCCCHHHHHHHHHcCcCEEEE
Confidence 579999986543 34567889998754 34666555566888899999999998753
No 343
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=63.25 E-value=39 Score=27.75 Aligned_cols=40 Identities=23% Similarity=0.448 Sum_probs=32.7
Q ss_pred HHHHHHHHhcCCCCCCcEEEEccCCChHHHHH-HHHhccccccc
Q 026239 93 YDLLKKIKESSSLRDIPVVIMSSENVPSRISR-CLEEGAEEFFL 135 (241)
Q Consensus 93 ~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~-~l~~Ga~~~l~ 135 (241)
+++++.+++.. ++||++..+-.+.+.+.+ +...||++++.
T Consensus 186 ~~~~~~i~~~~---~ipvia~GGi~s~~di~~~l~~~gadgV~v 226 (232)
T TIGR03572 186 LELIKTVSDAV---SIPVIALGGAGSLDDLVEVALEAGASAVAA 226 (232)
T ss_pred HHHHHHHHhhC---CCCEEEECCCCCHHHHHHHHHHcCCCEEEE
Confidence 78889998753 789999888888888888 66789998754
No 344
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=63.20 E-value=92 Score=26.29 Aligned_cols=27 Identities=15% Similarity=0.212 Sum_probs=16.7
Q ss_pred ccccEEEEeCCCCCCC-----HHHHHHHHHhc
Q 026239 76 VGVNLVITDYCMPGMT-----GYDLLKKIKES 102 (241)
Q Consensus 76 ~~~dlIilD~~mp~~~-----g~~ll~~ir~~ 102 (241)
..||+||+|..-|... ..++++.++..
T Consensus 144 ~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~ 175 (270)
T TIGR00417 144 NTFDVIIVDSTDPVGPAETLFTKEFYELLKKA 175 (270)
T ss_pred CCccEEEEeCCCCCCcccchhHHHHHHHHHHH
Confidence 4689999998655322 23555665543
No 345
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=63.17 E-value=42 Score=28.55 Aligned_cols=94 Identities=19% Similarity=0.201 Sum_probs=54.2
Q ss_pred eEEEEeCCHHHHHH----HHHHhhcCC--CEE-EEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCC
Q 026239 17 HVLAVDDSIIDRKL----IERLLKTSS--YQV-TTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPG 89 (241)
Q Consensus 17 ~ILiVdd~~~~~~~----l~~~L~~~g--~~v-~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~ 89 (241)
.|||-|++....-. +..+-+..+ ..+ ..+.+.+++.+.+.. .+|.|.+|-.-|+
T Consensus 153 ~ilikdnHi~~~g~~~~~v~~~r~~~~~~~~I~vev~t~eea~~A~~~-------------------gaD~I~ld~~~~e 213 (269)
T cd01568 153 AVLIKDNHIAAAGGITEAVKRARAAAPFEKKIEVEVETLEEAEEALEA-------------------GADIIMLDNMSPE 213 (269)
T ss_pred eeeecHhHHHHhCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHc-------------------CCCEEEECCCCHH
Confidence 46666666443322 222222333 223 467899999888742 3569999865441
Q ss_pred CCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccc
Q 026239 90 MTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFF 134 (241)
Q Consensus 90 ~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l 134 (241)
+--++++.++.. +++||+ .++.-+.+.+......|++.+-
T Consensus 214 -~l~~~v~~i~~~---~~i~i~-asGGIt~~ni~~~a~~Gad~Is 253 (269)
T cd01568 214 -ELKEAVKLLKGL---PRVLLE-ASGGITLENIRAYAETGVDVIS 253 (269)
T ss_pred -HHHHHHHHhccC---CCeEEE-EECCCCHHHHHHHHHcCCCEEE
Confidence 111223333332 256644 5566778889999999998763
No 346
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=63.07 E-value=21 Score=30.50 Aligned_cols=46 Identities=20% Similarity=0.261 Sum_probs=33.7
Q ss_pred ceEEEEeCCHHHHHHHHHHhhcCCCEEEEEC-------CHHHHHHHhcccCCC
Q 026239 16 FHVLAVDDSIIDRKLIERLLKTSSYQVTTVD-------SGSKALEFLGLHEDD 61 (241)
Q Consensus 16 ~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~-------~~~~al~~l~~~~~d 61 (241)
|||||+..+......|...|...|+.|.... +.+...+++....||
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~~~dl~d~~~~~~~~~~~~pd 53 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRSDLDLTDPEAVAKLLEAFKPD 53 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTTCS-TTSHHHHHHHHHHH--S
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCchhcCCCCHHHHHHHHHHhCCC
Confidence 6899999999999999999998898887653 444555555444444
No 347
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=62.84 E-value=99 Score=26.51 Aligned_cols=67 Identities=12% Similarity=0.025 Sum_probs=40.7
Q ss_pred HHHHHHHhhcCCCEEEE---E----CCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHHHHHHHHH
Q 026239 28 RKLIERLLKTSSYQVTT---V----DSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYDLLKKIK 100 (241)
Q Consensus 28 ~~~l~~~L~~~g~~v~~---~----~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~~ll~~ir 100 (241)
...+...++..|..|.. + .+....+..+... .+|+||+.. .+.+...+++.++
T Consensus 158 ~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~~~------------------~~d~i~~~~--~~~~~~~~~~~~~ 217 (345)
T cd06338 158 AEGAREKAEAAGLEVVYDETYPPGTADLSPLISKAKAA------------------GPDAVVVAG--HFPDAVLLVRQMK 217 (345)
T ss_pred HHHHHHHHHHcCCEEEEEeccCCCccchHHHHHHHHhc------------------CCCEEEECC--cchhHHHHHHHHH
Confidence 45566667777877652 1 2334455555433 355888743 4456788899998
Q ss_pred hcCCCCCCcEEEEccC
Q 026239 101 ESSSLRDIPVVIMSSE 116 (241)
Q Consensus 101 ~~~~~~~ipvIils~~ 116 (241)
.... +.+++..+..
T Consensus 218 ~~g~--~~~~~~~~~~ 231 (345)
T cd06338 218 ELGY--NPKALYMTVG 231 (345)
T ss_pred HcCC--CCCEEEEecC
Confidence 7654 5567665443
No 348
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=62.64 E-value=23 Score=33.06 Aligned_cols=57 Identities=18% Similarity=0.362 Sum_probs=39.1
Q ss_pred cccccEEEEeCCCCCC-CHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccc
Q 026239 75 EVGVNLVITDYCMPGM-TGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFF 134 (241)
Q Consensus 75 ~~~~dlIilD~~mp~~-~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l 134 (241)
+..+|+|.+|..-... ..++.+++||+..+ +++|++ ..-.+.+.+..+.++||+.+.
T Consensus 251 ~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~--~~~v~a-G~V~t~~~a~~~~~aGad~I~ 308 (495)
T PTZ00314 251 EAGVDVLVVDSSQGNSIYQIDMIKKLKSNYP--HVDIIA-GNVVTADQAKNLIDAGADGLR 308 (495)
T ss_pred HCCCCEEEEecCCCCchHHHHHHHHHHhhCC--CceEEE-CCcCCHHHHHHHHHcCCCEEE
Confidence 3457899999843221 23689999998643 667665 334456778889999998663
No 349
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=62.57 E-value=79 Score=29.53 Aligned_cols=97 Identities=13% Similarity=0.228 Sum_probs=55.2
Q ss_pred eCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCH----H---H
Q 026239 22 DDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTG----Y---D 94 (241)
Q Consensus 22 dd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g----~---~ 94 (241)
--+....+.+...|...||.++.. . ...|+||++.|-.-... + .
T Consensus 24 ~~N~~dse~~~~~L~~~G~~~~~~--~---------------------------e~ADvvviNTCtv~~~A~~k~~~~i~ 74 (502)
T PRK14326 24 QMNVHDSERLAGLLEAAGYVRAAE--G---------------------------QDADVVVFNTCAVRENADNRLYGNLG 74 (502)
T ss_pred CCcHHHHHHHHHHHHHCCCEECCC--c---------------------------CCCCEEEEECCCeeehHHHHHHHHHH
Confidence 356667777888888788866531 1 12469999998765443 2 4
Q ss_pred HHHHHHhcCCCCCCcEEEEccCCChHHHHHHHH-hcccccccCCCCHHHHHHhhHHH
Q 026239 95 LLKKIKESSSLRDIPVVIMSSENVPSRISRCLE-EGAEEFFLKPVRLSDLNKLKPHL 150 (241)
Q Consensus 95 ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~-~Ga~~~l~KP~~~~~L~~~~~~l 150 (241)
.++.+|+..+ .++||+..-.. ...-..+++ ....|++..+.....+..++..+
T Consensus 75 ~~~~~k~~~p--~~~VvvgGc~a-~~~~ee~~~~~p~VD~Vvg~~~~~~i~~ll~~~ 128 (502)
T PRK14326 75 HLAPVKRANP--GMQIAVGGCLA-QKDRDTILKRAPWVDVVFGTHNIGSLPTLLERA 128 (502)
T ss_pred HHHHHHHhCC--CCEEEEECccc-ccCHHHHHhhCCCCeEEECCCCHHHHHHHHHHH
Confidence 4455555433 56565543332 222333443 23345777777766666555443
No 350
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=62.44 E-value=17 Score=30.07 Aligned_cols=54 Identities=19% Similarity=0.216 Sum_probs=39.5
Q ss_pred EEEEeCCCCC---CCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccC
Q 026239 80 LVITDYCMPG---MTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLK 136 (241)
Q Consensus 80 lIilD~~mp~---~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~K 136 (241)
+.|.|.+... ..-++.++.|.+.. .+|+++=.+-.+.+.+..++++||+..++-
T Consensus 49 l~i~dl~~~~~~~~~~~~~i~~i~~~~---~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iG 105 (241)
T PRK13585 49 LHLVDLDGAFEGERKNAEAIEKIIEAV---GVPVQLGGGIRSAEDAASLLDLGVDRVILG 105 (241)
T ss_pred EEEEechhhhcCCcccHHHHHHHHHHc---CCcEEEcCCcCCHHHHHHHHHcCCCEEEEC
Confidence 7778887532 23456777776643 689998777777888999999999977653
No 351
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=62.39 E-value=97 Score=26.29 Aligned_cols=71 Identities=13% Similarity=-0.004 Sum_probs=43.4
Q ss_pred HHHHHHhhcCCCEEEE---E----CCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHHHHHHHHHh
Q 026239 29 KLIERLLKTSSYQVTT---V----DSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYDLLKKIKE 101 (241)
Q Consensus 29 ~~l~~~L~~~g~~v~~---~----~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~~ll~~ir~ 101 (241)
..++..++..|..|.. + .+....+..+.... +|+||+-. .+.++..+++.++.
T Consensus 155 ~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~------------------pd~v~~~~--~~~~~~~~~~~~~~ 214 (312)
T cd06346 155 DAFTKAFEALGGTVTNVVAHEEGKSSYSSEVAAAAAGG------------------PDALVVIG--YPETGSGILRSAYE 214 (312)
T ss_pred HHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcC------------------CCEEEEec--ccchHHHHHHHHHH
Confidence 4456667777876652 1 34556666665444 45888753 34478888999988
Q ss_pred cCCCCCCcEEEEccCCChHH
Q 026239 102 SSSLRDIPVVIMSSENVPSR 121 (241)
Q Consensus 102 ~~~~~~ipvIils~~~~~~~ 121 (241)
... ..+++..++...+..
T Consensus 215 ~G~--~~~~~~~~~~~~~~~ 232 (312)
T cd06346 215 QGL--FDKFLLTDGMKSDSF 232 (312)
T ss_pred cCC--CCceEeeccccChHH
Confidence 654 566766554444443
No 352
>PRK00955 hypothetical protein; Provisional
Probab=62.24 E-value=40 Score=32.35 Aligned_cols=32 Identities=16% Similarity=0.404 Sum_probs=22.8
Q ss_pred cceEEEEe------CCHHHHHHHHHHhhcCCCEEEEEC
Q 026239 15 QFHVLAVD------DSIIDRKLIERLLKTSSYQVTTVD 46 (241)
Q Consensus 15 ~~~ILiVd------d~~~~~~~l~~~L~~~g~~v~~~~ 46 (241)
.+-|++|- -.+.-...|.++|+..||.|.++.
T Consensus 13 ~~d~i~v~gdayvdhp~fg~a~i~r~L~~~G~~v~ii~ 50 (620)
T PRK00955 13 ELDFILVTGDAYVDHPSFGTAIIGRVLEAEGFRVGIIA 50 (620)
T ss_pred ccCEEEEeCcccccCCccHHHHHHHHHHHCCCEEEEec
Confidence 35566664 334556788999999999998664
No 353
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=62.21 E-value=52 Score=26.86 Aligned_cols=53 Identities=21% Similarity=0.296 Sum_probs=39.9
Q ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhccccccc
Q 026239 80 LVITDYCMP---GMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFL 135 (241)
Q Consensus 80 lIilD~~mp---~~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~ 135 (241)
+.|+|+.-- ...-+++++.+++.. .+|+++-.+-.+.+.+.++++.||+..+.
T Consensus 46 l~v~dl~~~~~~~~~~~~~i~~i~~~~---~~pv~~~GgI~~~e~~~~~~~~Gad~vvi 101 (234)
T cd04732 46 LHVVDLDGAKGGEPVNLELIEEIVKAV---GIPVQVGGGIRSLEDIERLLDLGVSRVII 101 (234)
T ss_pred EEEECCCccccCCCCCHHHHHHHHHhc---CCCEEEeCCcCCHHHHHHHHHcCCCEEEE
Confidence 666676432 233478899998753 68999888888899999999999887654
No 354
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=61.99 E-value=20 Score=28.88 Aligned_cols=33 Identities=9% Similarity=0.224 Sum_probs=28.6
Q ss_pred ceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCH
Q 026239 16 FHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSG 48 (241)
Q Consensus 16 ~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~ 48 (241)
++|+|||-.......+.+.|+..|+.+..+.+.
T Consensus 1 ~~~~v~~~~~~~~~~~~~~l~~~G~~~~~~~~~ 33 (200)
T PRK13143 1 MMIVIIDYGVGNLRSVSKALERAGAEVVITSDP 33 (200)
T ss_pred CeEEEEECCCccHHHHHHHHHHCCCeEEEECCH
Confidence 589999988888899999999999998887653
No 355
>PF08415 NRPS: Nonribosomal peptide synthase; InterPro: IPR013624 This domain is found in bacterial non-ribosomal peptide synthetases (NRPS). NRPS are megaenzymes organised as iterative modules, one for each amino acid to be built into the peptide product []. NRPS modules are involved in epothilone biosynthesis (EpoB), myxothiazol biosynthesis (MtaC and MtaD), and other functions []. The NRPS domain tends to be found together with the condensation domain (IPR001242 from INTERPRO) and the phosphopantetheine binding domain (IPR006163 from INTERPRO).
Probab=61.83 E-value=13 Score=23.52 Aligned_cols=29 Identities=21% Similarity=0.406 Sum_probs=21.3
Q ss_pred CCCHHHHHHHHHhc--CCCCCCcEEEEccCC
Q 026239 89 GMTGYDLLKKIKES--SSLRDIPVVIMSSEN 117 (241)
Q Consensus 89 ~~~g~~ll~~ir~~--~~~~~ipvIils~~~ 117 (241)
..+|.++++++... ....-+|||+.|.-.
T Consensus 3 ~~sGv~vlRel~r~~~~~~~~~PVVFTS~Lg 33 (58)
T PF08415_consen 3 SFSGVEVLRELARRGGGRAAVMPVVFTSMLG 33 (58)
T ss_pred cccHHHHHHHHHHhcCCCCCcCCEEEeCCCC
Confidence 35899999999876 233468999887644
No 356
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=61.72 E-value=31 Score=27.56 Aligned_cols=32 Identities=9% Similarity=0.126 Sum_probs=27.1
Q ss_pred EEEEeCCHHHHHHHHHHhhcCCCEEEEECCHH
Q 026239 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGS 49 (241)
Q Consensus 18 ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~ 49 (241)
|+|||-..-....+.+.|+..|+.+.++.+..
T Consensus 1 i~i~d~g~~~~~~~~~~l~~~g~~v~v~~~~~ 32 (198)
T cd01748 1 IAIIDYGMGNLRSVANALERLGAEVIITSDPE 32 (198)
T ss_pred CEEEeCCCChHHHHHHHHHHCCCeEEEEcChH
Confidence 57888888888889999999999999887654
No 357
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=61.65 E-value=14 Score=30.43 Aligned_cols=53 Identities=17% Similarity=0.145 Sum_probs=38.3
Q ss_pred cccEEEEeCCC----C--CCCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhccccc
Q 026239 77 GVNLVITDYCM----P--GMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEF 133 (241)
Q Consensus 77 ~~dlIilD~~m----p--~~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~ 133 (241)
..|.|.+.-.. + .-.|+++++++++.. ++||+.+.+- ..+.+..++++||+++
T Consensus 131 gaDYv~~Gpv~t~tK~~~~p~gl~~l~~~~~~~---~iPvvAIGGI-~~~n~~~~~~~GA~gi 189 (221)
T PRK06512 131 RPDYLFFGKLGADNKPEAHPRNLSLAEWWAEMI---EIPCIVQAGS-DLASAVEVAETGAEFV 189 (221)
T ss_pred CCCEEEECCCCCCCCCCCCCCChHHHHHHHHhC---CCCEEEEeCC-CHHHHHHHHHhCCCEE
Confidence 35566665332 1 124788998888753 7999999875 5778889999999887
No 358
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=61.56 E-value=38 Score=28.94 Aligned_cols=75 Identities=17% Similarity=0.216 Sum_probs=42.9
Q ss_pred ceEEEEeCCH------HHHHHHHHHhhcCCCEEEEEC-CHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCC
Q 026239 16 FHVLAVDDSI------IDRKLIERLLKTSSYQVTTVD-SGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMP 88 (241)
Q Consensus 16 ~~ILiVdd~~------~~~~~l~~~L~~~g~~v~~~~-~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp 88 (241)
|+||++-... .....+...|...|++|+.+. ++......+ ....+|+|.+-....
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~------------------~~~~~diih~~~~~~ 62 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKKALISKI------------------EIINADIVHLHWIHG 62 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecchhhhCh------------------hcccCCEEEEEcccc
Confidence 4677775543 355566777778899887544 333333333 234567998865444
Q ss_pred CCCHHHHHHHHHhcCCCCCCcEEEE
Q 026239 89 GMTGYDLLKKIKESSSLRDIPVVIM 113 (241)
Q Consensus 89 ~~~g~~ll~~ir~~~~~~~ipvIil 113 (241)
..-.+..+.++. ..+|+|+.
T Consensus 63 ~~~~~~~~~~~~-----~~~~~v~~ 82 (365)
T cd03825 63 GFLSIEDLSKLL-----DRKPVVWT 82 (365)
T ss_pred CccCHHHHHHHH-----cCCCEEEE
Confidence 444444555443 25677765
No 359
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=61.52 E-value=72 Score=27.07 Aligned_cols=40 Identities=15% Similarity=0.253 Sum_probs=32.2
Q ss_pred HHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhccccc
Q 026239 93 YDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEF 133 (241)
Q Consensus 93 ~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~ 133 (241)
++.++.++...+ .++|||...+-.+.+.+.+++.+||+.+
T Consensus 230 ~~~v~~i~~~~~-~~ipiia~GGI~~~~da~~~l~~GAd~V 269 (289)
T cd02810 230 LRWVARLAARLQ-LDIPIIGVGGIDSGEDVLEMLMAGASAV 269 (289)
T ss_pred HHHHHHHHHhcC-CCCCEEEECCCCCHHHHHHHHHcCccHh
Confidence 566788876532 2699999999888999999999998865
No 360
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=61.50 E-value=38 Score=28.28 Aligned_cols=61 Identities=16% Similarity=0.291 Sum_probs=44.7
Q ss_pred ccEEEEeCCCC--CCCHHHHHHHHHhcCCCCCC-cEEEEccCCChHHHHHHHHhcccccccCCCCHH
Q 026239 78 VNLVITDYCMP--GMTGYDLLKKIKESSSLRDI-PVVIMSSENVPSRISRCLEEGAEEFFLKPVRLS 141 (241)
Q Consensus 78 ~dlIilD~~mp--~~~g~~ll~~ir~~~~~~~i-pvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~ 141 (241)
+.++.+++.-- +....++++.+++.. ++ |+++=.+-.+.+.+.+++..||+.++.-..-.+
T Consensus 155 ~~~vYle~gs~~g~~~~~e~I~~v~~~~---~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGSai~~ 218 (232)
T PRK04169 155 MPIVYLEYGGGAGDPVPPEMVKAVKKAL---DITPLIYGGGIRSPEQARELMAAGADTIVVGNIIEE 218 (232)
T ss_pred CCeEEEECCCCCCCCCCHHHHHHHHHhc---CCCcEEEECCCCCHHHHHHHHHhCCCEEEEChHHhh
Confidence 45888887632 122378999999854 45 888877777888888989999999988764333
No 361
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=61.42 E-value=69 Score=28.87 Aligned_cols=90 Identities=18% Similarity=0.221 Sum_probs=58.7
Q ss_pred HHHHHHhhcCCCEE--EEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCC-----CCCHHHHHHHHHh
Q 026239 29 KLIERLLKTSSYQV--TTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMP-----GMTGYDLLKKIKE 101 (241)
Q Consensus 29 ~~l~~~L~~~g~~v--~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp-----~~~g~~ll~~ir~ 101 (241)
+.|..+-+..+..+ ..+-+.++|...+.. .+|.|++.-+=. +...++++..++.
T Consensus 243 ~~i~~lr~~~~~pvivKgV~~~~dA~~a~~~-------------------G~d~I~vsnhGGr~~d~~~~t~~~L~ei~~ 303 (383)
T cd03332 243 EDLAFLREWTDLPIVLKGILHPDDARRAVEA-------------------GVDGVVVSNHGGRQVDGSIAALDALPEIVE 303 (383)
T ss_pred HHHHHHHHhcCCCEEEecCCCHHHHHHHHHC-------------------CCCEEEEcCCCCcCCCCCcCHHHHHHHHHH
Confidence 44555555444333 346788888877642 355777653211 2235677888875
Q ss_pred cCCCCCCcEEEEccCCChHHHHHHHHhccccccc-CCC
Q 026239 102 SSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFL-KPV 138 (241)
Q Consensus 102 ~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~-KP~ 138 (241)
... .++|||+=++-.....+.+++.+||+.++. .||
T Consensus 304 ~~~-~~~~vi~dGGIr~G~Dv~KALaLGA~~v~iGr~~ 340 (383)
T cd03332 304 AVG-DRLTVLFDSGVRTGADIMKALALGAKAVLIGRPY 340 (383)
T ss_pred Hhc-CCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHH
Confidence 432 369999888888889999999999997743 444
No 362
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=61.29 E-value=17 Score=26.48 Aligned_cols=101 Identities=15% Similarity=0.098 Sum_probs=54.9
Q ss_pred eEEEEeCC--HHHHHHHHHHhhcCCCEEEEECCHHHHHHH-hcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHH
Q 026239 17 HVLAVDDS--IIDRKLIERLLKTSSYQVTTVDSGSKALEF-LGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGY 93 (241)
Q Consensus 17 ~ILiVdd~--~~~~~~l~~~L~~~g~~v~~~~~~~~al~~-l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~ 93 (241)
+|.++.-- ......+...|...|..+....+..+.... +....++ -=+|++...=...+-.
T Consensus 7 ~i~i~G~G~s~~~A~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------d~vi~is~sg~~~~~~ 70 (131)
T PF01380_consen 7 RIYIYGSGSSYGVAQYAALKLQKLGRIVVISYEAGEFFHGPLENLDPD----------------DLVIIISYSGETRELI 70 (131)
T ss_dssp EEEEEESTHHHHHHHHHHHHHHHHHSSEEEEEEHHHHHTTGGGGCSTT----------------EEEEEEESSSTTHHHH
T ss_pred EEEEEEcchHHHHHHHHHHHHHHhcCcceeccchHHHhhhhccccccc----------------ceeEeeeccccchhhh
Confidence 55555543 445555666666667666666555553332 2222221 1145555332233456
Q ss_pred HHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHH
Q 026239 94 DLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSD 142 (241)
Q Consensus 94 ~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~ 142 (241)
+.++.+++. ++++|++|+..+..... .+|..|.-|.....
T Consensus 71 ~~~~~ak~~----g~~vi~iT~~~~~~l~~-----~ad~~l~~~~~~~~ 110 (131)
T PF01380_consen 71 ELLRFAKER----GAPVILITSNSESPLAR-----LADIVLYIPTGEES 110 (131)
T ss_dssp HHHHHHHHT----TSEEEEEESSTTSHHHH-----HSSEEEEEESSCGS
T ss_pred hhhHHHHhc----CCeEEEEeCCCCCchhh-----hCCEEEEecCCCcc
Confidence 777777764 67999999877655433 24555555554433
No 363
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=61.23 E-value=92 Score=25.93 Aligned_cols=42 Identities=17% Similarity=0.336 Sum_probs=33.0
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCC
Q 026239 92 GYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137 (241)
Q Consensus 92 g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP 137 (241)
..+.++++|+. .++||++=.+-...+.+..+.++ |++++.-.
T Consensus 175 ~~~~i~~lr~~---~~~pI~vggGI~~~e~~~~~~~~-ADgvVvGS 216 (242)
T cd04724 175 LKELIKRIRKY---TDLPIAVGFGISTPEQAAEVAKY-ADGVIVGS 216 (242)
T ss_pred HHHHHHHHHhc---CCCcEEEEccCCCHHHHHHHHcc-CCEEEECH
Confidence 35677888874 37999987777778888888888 99998764
No 364
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=61.21 E-value=1e+02 Score=26.16 Aligned_cols=63 Identities=13% Similarity=0.215 Sum_probs=40.6
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHH
Q 026239 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPH 149 (241)
Q Consensus 78 ~dlIilD~~mp~~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~ 149 (241)
.|++|+-...++.-|..+++.+.. .+|||+..... ..+.+..|..+++..|.+.+++...+..
T Consensus 264 ad~~i~ps~~~e~~~~~l~EA~a~-----G~PvI~~~~~~----~~e~i~~~~~g~~~~~~~~~~l~~~i~~ 326 (355)
T cd03819 264 ADIVVSASTEPEAFGRTAVEAQAM-----GRPVIASDHGG----ARETVRPGETGLLVPPGDAEALAQALDQ 326 (355)
T ss_pred CCEEEecCCCCCCCchHHHHHHhc-----CCCEEEcCCCC----cHHHHhCCCceEEeCCCCHHHHHHHHHH
Confidence 356665432344556677777664 67887643222 2345566778999999999999776643
No 365
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=61.10 E-value=91 Score=25.54 Aligned_cols=34 Identities=3% Similarity=-0.150 Sum_probs=27.6
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhcCCCEEEEEC
Q 026239 13 ESQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVD 46 (241)
Q Consensus 13 ~~~~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~ 46 (241)
-...+|||..-...+...+.+.|...|+.|..+.
T Consensus 13 l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~ 46 (258)
T PRK06935 13 LDGKVAIVTGGNTGLGQGYAVALAKAGADIIITT 46 (258)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEe
Confidence 3456899999998888888888888899887554
No 366
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=60.96 E-value=67 Score=26.55 Aligned_cols=74 Identities=8% Similarity=0.004 Sum_probs=52.3
Q ss_pred ECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCC--CCCHHHHHHHHHhcCCCCCCcEEEEccCCChHHH
Q 026239 45 VDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMP--GMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRI 122 (241)
Q Consensus 45 ~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp--~~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~ 122 (241)
..+..+..+.+.....| -+.|+|++-- ....+++++.|.+.. .+|+.+-.+-.+.+.+
T Consensus 34 ~~dp~~~a~~~~~~g~~-----------------~l~i~DLd~~~~~~~n~~~i~~i~~~~---~~~v~vgGGir~~edv 93 (233)
T cd04723 34 TSDPLDVARAYKELGFR-----------------GLYIADLDAIMGRGDNDEAIRELAAAW---PLGLWVDGGIRSLENA 93 (233)
T ss_pred CCCHHHHHHHHHHCCCC-----------------EEEEEeCccccCCCccHHHHHHHHHhC---CCCEEEecCcCCHHHH
Confidence 34666666666544333 2788888632 234578888887643 5899888888888999
Q ss_pred HHHHHhcccccccCCC
Q 026239 123 SRCLEEGAEEFFLKPV 138 (241)
Q Consensus 123 ~~~l~~Ga~~~l~KP~ 138 (241)
..++..||+-.+.-..
T Consensus 94 ~~~l~~Ga~~viigt~ 109 (233)
T cd04723 94 QEWLKRGASRVIVGTE 109 (233)
T ss_pred HHHHHcCCCeEEEcce
Confidence 9999999988876554
No 367
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=60.81 E-value=1.2e+02 Score=26.86 Aligned_cols=44 Identities=9% Similarity=0.154 Sum_probs=33.3
Q ss_pred HHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccC
Q 026239 93 YDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLK 136 (241)
Q Consensus 93 ~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~K 136 (241)
++.+..+........+|||+-.+-....++..|+.+||+..+.=
T Consensus 198 ltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA~GAd~VMlG 241 (343)
T TIGR01305 198 LSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFGAGADFVMLG 241 (343)
T ss_pred HHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHHcCCCEEEEC
Confidence 44555555433333789999999888999999999999987664
No 368
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=60.81 E-value=56 Score=24.66 Aligned_cols=85 Identities=14% Similarity=0.163 Sum_probs=46.0
Q ss_pred EEEEeCCHHHH--HHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHHHH
Q 026239 18 VLAVDDSIIDR--KLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYDL 95 (241)
Q Consensus 18 ILiVdd~~~~~--~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~~l 95 (241)
|+++.|+-... ..+...+-..-..-....+...++..+..... ....+|+|++-+.-.+..-.+-
T Consensus 2 v~~~GDSv~~~~~~~~~~~~p~~~i~a~~g~~~~~~~~~l~~~~~-------------~~~~~d~vvi~lGtNd~~~~~n 68 (150)
T cd01840 2 ITAIGDSVMLDSSPALQEIFPNIQIDAKVGRQMSEAPDLIRQLKD-------------SGKLRKTVVIGLGTNGPFTKDQ 68 (150)
T ss_pred eeEEeehHHHchHHHHHHHCCCCEEEeeecccHHHHHHHHHHHHH-------------cCCCCCeEEEEecCCCCCCHHH
Confidence 67888887665 34454443321222233456677776643211 1234678988776666543444
Q ss_pred HHHHHhcCCCCCCcEEEEccC
Q 026239 96 LKKIKESSSLRDIPVVIMSSE 116 (241)
Q Consensus 96 l~~ir~~~~~~~ipvIils~~ 116 (241)
++.|.+... ++.+|++++..
T Consensus 69 l~~ii~~~~-~~~~ivlv~~~ 88 (150)
T cd01840 69 LDELLDALG-PDRQVYLVNPH 88 (150)
T ss_pred HHHHHHHcC-CCCEEEEEECC
Confidence 444444332 25778887765
No 369
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=60.75 E-value=54 Score=27.30 Aligned_cols=16 Identities=6% Similarity=0.171 Sum_probs=8.0
Q ss_pred HHHHHhhcCCCEEEEE
Q 026239 30 LIERLLKTSSYQVTTV 45 (241)
Q Consensus 30 ~l~~~L~~~g~~v~~~ 45 (241)
.+...++..||.+..+
T Consensus 25 gi~~~a~~~g~~~~~~ 40 (283)
T cd06279 25 GVAEVLDAAGVNLLLL 40 (283)
T ss_pred HHHHHHHHCCCEEEEe
Confidence 3444455555555543
No 370
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=60.75 E-value=30 Score=28.91 Aligned_cols=72 Identities=17% Similarity=0.215 Sum_probs=50.4
Q ss_pred EEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCC---CHHHHHHHHHhcCCCCCCcEEEEccCCC
Q 026239 42 VTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGM---TGYDLLKKIKESSSLRDIPVVIMSSENV 118 (241)
Q Consensus 42 v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~---~g~~ll~~ir~~~~~~~ipvIils~~~~ 118 (241)
+..+.+.-+.........-| .|||+|+.-... .-++++++..+.- .+|+-+=.+-.+
T Consensus 26 lrd~GDpVelA~~Y~e~GAD-----------------ElvFlDItAs~~gr~~~~~vv~r~A~~v---fiPltVGGGI~s 85 (256)
T COG0107 26 LRDAGDPVELAKRYNEEGAD-----------------ELVFLDITASSEGRETMLDVVERVAEQV---FIPLTVGGGIRS 85 (256)
T ss_pred hhhcCChHHHHHHHHHcCCC-----------------eEEEEecccccccchhHHHHHHHHHhhc---eeeeEecCCcCC
Confidence 33456666666665554444 299999987643 3456666665533 688887777788
Q ss_pred hHHHHHHHHhccccc
Q 026239 119 PSRISRCLEEGAEEF 133 (241)
Q Consensus 119 ~~~~~~~l~~Ga~~~ 133 (241)
.+.+.+.|.+|||-.
T Consensus 86 ~eD~~~ll~aGADKV 100 (256)
T COG0107 86 VEDARKLLRAGADKV 100 (256)
T ss_pred HHHHHHHHHcCCCee
Confidence 899999999999866
No 371
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=60.61 E-value=70 Score=26.50 Aligned_cols=79 Identities=10% Similarity=0.087 Sum_probs=58.3
Q ss_pred cceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCH-H
Q 026239 15 QFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTG-Y 93 (241)
Q Consensus 15 ~~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g-~ 93 (241)
.-.|||-....-+...+.+-|...|-.|.++...++.|+......|+ +.-.++|+. +.++ -
T Consensus 5 gnTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~~L~e~~~~~p~----------------~~t~v~Dv~--d~~~~~ 66 (245)
T COG3967 5 GNTILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKAENPE----------------IHTEVCDVA--DRDSRR 66 (245)
T ss_pred CcEEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHHHHHHHHhcCcc----------------hheeeeccc--chhhHH
Confidence 45688888777777777777878899999999888989888766655 335666653 4443 3
Q ss_pred HHHHHHHhcCCCCCCcEEEE
Q 026239 94 DLLKKIKESSSLRDIPVVIM 113 (241)
Q Consensus 94 ~ll~~ir~~~~~~~ipvIil 113 (241)
+++.+|++..+ .+-|+|=
T Consensus 67 ~lvewLkk~~P--~lNvliN 84 (245)
T COG3967 67 ELVEWLKKEYP--NLNVLIN 84 (245)
T ss_pred HHHHHHHhhCC--chheeee
Confidence 68899998765 7777764
No 372
>PRK14974 cell division protein FtsY; Provisional
Probab=60.49 E-value=1.2e+02 Score=26.76 Aligned_cols=61 Identities=18% Similarity=0.290 Sum_probs=29.8
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHHh---cCCCCCCcEEEEccCCChHHHH--HHH--HhcccccccCCC
Q 026239 77 GVNLVITDYCMPGMTGYDLLKKIKE---SSSLRDIPVVIMSSENVPSRIS--RCL--EEGAEEFFLKPV 138 (241)
Q Consensus 77 ~~dlIilD~~mp~~~g~~ll~~ir~---~~~~~~ipvIils~~~~~~~~~--~~l--~~Ga~~~l~KP~ 138 (241)
.+|+||+|..=-.-...+++..|+. .. .++.-++++++....+... ..+ ..|++++|.--+
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~-~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~giIlTKl 289 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVT-KPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTKV 289 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhh-CCceEEEeeccccchhHHHHHHHHHhcCCCCEEEEeee
Confidence 4679999975211123344444432 21 1355566666544333332 233 257777655433
No 373
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=60.22 E-value=98 Score=27.80 Aligned_cols=90 Identities=11% Similarity=0.099 Sum_probs=44.6
Q ss_pred ceEEEEeCCHH---HHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCC-CCCCC
Q 026239 16 FHVLAVDDSII---DRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYC-MPGMT 91 (241)
Q Consensus 16 ~~ILiVdd~~~---~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~-mp~~~ 91 (241)
.+|.+|..|.. ..+.+..+-+..|..+..+.++.+....+.. -..+|+||+|.- +...+
T Consensus 168 ~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~-----------------l~~~DlVLIDTaG~~~~d 230 (374)
T PRK14722 168 SKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAE-----------------LRNKHMVLIDTIGMSQRD 230 (374)
T ss_pred CeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHH-----------------hcCCCEEEEcCCCCCccc
Confidence 46766665553 2334444444556666666555444333321 123579999874 22222
Q ss_pred H--HHHHHHHHhcCCCCCCcEEEEccCCChHHHH
Q 026239 92 G--YDLLKKIKESSSLRDIPVVIMSSENVPSRIS 123 (241)
Q Consensus 92 g--~~ll~~ir~~~~~~~ipvIils~~~~~~~~~ 123 (241)
. .+.+..+..... +.-.++++++......+.
T Consensus 231 ~~l~e~La~L~~~~~-~~~~lLVLsAts~~~~l~ 263 (374)
T PRK14722 231 RTVSDQIAMLHGADT-PVQRLLLLNATSHGDTLN 263 (374)
T ss_pred HHHHHHHHHHhccCC-CCeEEEEecCccChHHHH
Confidence 2 234444543221 123477777765554443
No 374
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=59.93 E-value=74 Score=26.92 Aligned_cols=87 Identities=11% Similarity=0.151 Sum_probs=52.7
Q ss_pred HHHHHhhcCCCEEE-EECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeC-CCCCC-CHHHHHHHHHhcCCCC
Q 026239 30 LIERLLKTSSYQVT-TVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDY-CMPGM-TGYDLLKKIKESSSLR 106 (241)
Q Consensus 30 ~l~~~L~~~g~~v~-~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~-~mp~~-~g~~ll~~ir~~~~~~ 106 (241)
.+...-...|.++. .+.+..|+-..+... .++|=++- ++... ..++....|...-+ .
T Consensus 149 ~l~~~a~~lGle~lVEVh~~~El~~al~~~-------------------a~iiGINnRdL~tf~vd~~~~~~l~~~ip-~ 208 (254)
T PF00218_consen 149 ELLELAHSLGLEALVEVHNEEELERALEAG-------------------ADIIGINNRDLKTFEVDLNRTEELAPLIP-K 208 (254)
T ss_dssp HHHHHHHHTT-EEEEEESSHHHHHHHHHTT--------------------SEEEEESBCTTTCCBHTHHHHHHHCHSH-T
T ss_pred HHHHHHHHcCCCeEEEECCHHHHHHHHHcC-------------------CCEEEEeCccccCcccChHHHHHHHhhCc-c
Confidence 34444456798765 789999987776421 23554443 23322 23445555554333 2
Q ss_pred CCcEEEEccCCChHHHHHHHHhcccccccC
Q 026239 107 DIPVVIMSSENVPSRISRCLEEGAEEFFLK 136 (241)
Q Consensus 107 ~ipvIils~~~~~~~~~~~l~~Ga~~~l~K 136 (241)
++.+|.-|+-.+.+.+..+...|+++||.-
T Consensus 209 ~~~~iseSGI~~~~d~~~l~~~G~davLVG 238 (254)
T PF00218_consen 209 DVIVISESGIKTPEDARRLARAGADAVLVG 238 (254)
T ss_dssp TSEEEEESS-SSHHHHHHHCTTT-SEEEES
T ss_pred ceeEEeecCCCCHHHHHHHHHCCCCEEEEC
Confidence 566777778888999999999999999764
No 375
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=59.90 E-value=1.3e+02 Score=28.04 Aligned_cols=51 Identities=27% Similarity=0.425 Sum_probs=35.8
Q ss_pred cccEEEEeCCCCCC-------CHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhccc
Q 026239 77 GVNLVITDYCMPGM-------TGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAE 131 (241)
Q Consensus 77 ~~dlIilD~~mp~~-------~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~ 131 (241)
.+|.|.+.-..|.. -|++.++++.... ++||+.+.+- +.+.+..++..|++
T Consensus 410 gadyi~~gpif~t~tk~~~~~~g~~~~~~~~~~~---~~Pv~aiGGI-~~~~~~~~~~~G~~ 467 (502)
T PLN02898 410 GADYIGCGGVFPTNTKANNKTIGLDGLREVCEAS---KLPVVAIGGI-SASNAASVMESGAP 467 (502)
T ss_pred CCCEEEECCeecCCCCCCCCCCCHHHHHHHHHcC---CCCEEEECCC-CHHHHHHHHHcCCC
Confidence 45577654333321 2788999987643 7999988665 47788899999998
No 376
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=59.74 E-value=24 Score=27.88 Aligned_cols=30 Identities=17% Similarity=0.144 Sum_probs=25.0
Q ss_pred EEEEeCCHHHHHHHHHHhhcCCCEEEEECC
Q 026239 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDS 47 (241)
Q Consensus 18 ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~ 47 (241)
|||+|.....-..+.++|+..|+.+..+..
T Consensus 1 il~~~~~~~~~~~~~~~l~~~G~~~~~~~~ 30 (184)
T cd01743 1 ILLIDNYDSFTYNLVQYLRELGAEVVVVRN 30 (184)
T ss_pred CEEEeCCCccHHHHHHHHHHcCCceEEEeC
Confidence 689998888888899999999988776543
No 377
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=59.72 E-value=1.1e+02 Score=26.15 Aligned_cols=39 Identities=15% Similarity=0.297 Sum_probs=32.7
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhccccc
Q 026239 92 GYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEF 133 (241)
Q Consensus 92 g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~ 133 (241)
.+++++.+++.. ++|||...+-.+.+.+.+++.+||+.+
T Consensus 222 ~l~~v~~i~~~~---~ipvi~~GGI~~~~da~~~l~aGAd~V 260 (301)
T PRK07259 222 ALRMVYQVYQAV---DIPIIGMGGISSAEDAIEFIMAGASAV 260 (301)
T ss_pred cHHHHHHHHHhC---CCCEEEECCCCCHHHHHHHHHcCCCce
Confidence 367888888753 699999999889999999999998754
No 378
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=59.62 E-value=58 Score=28.07 Aligned_cols=84 Identities=14% Similarity=0.139 Sum_probs=48.1
Q ss_pred ceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCC--CCHH
Q 026239 16 FHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPG--MTGY 93 (241)
Q Consensus 16 ~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~--~~g~ 93 (241)
+.|.-+..+......+...|...|+.+..+.+.......+....+ -|++|+ +...| .+-+
T Consensus 45 I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~-----------------~d~~i~-iS~sG~t~~~~ 106 (321)
T PRK11543 45 VVVSGIGKSGHIGKKIAATLASTGTPAFFVHPAEALHGDLGMIES-----------------RDVMLF-ISYSGGAKELD 106 (321)
T ss_pred EEEEecChhHHHHHHHHHHHHcCCCceeecChHHHhhCCcCccCC-----------------CCEEEE-EeCCCCcHHHH
Confidence 334444555666677777777788877766544322221111111 135444 44444 3456
Q ss_pred HHHHHHHhcCCCCCCcEEEEccCCChHH
Q 026239 94 DLLKKIKESSSLRDIPVVIMSSENVPSR 121 (241)
Q Consensus 94 ~ll~~ir~~~~~~~ipvIils~~~~~~~ 121 (241)
++++..++. .+|||.+|+......
T Consensus 107 ~~~~~ak~~----g~~vI~iT~~~~s~l 130 (321)
T PRK11543 107 LIIPRLEDK----SIALLAMTGKPTSPL 130 (321)
T ss_pred HHHHHHHHc----CCeEEEEECCCCChh
Confidence 777777764 689999999776543
No 379
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=59.59 E-value=73 Score=31.51 Aligned_cols=102 Identities=6% Similarity=0.002 Sum_probs=53.5
Q ss_pred ceEEEEeCCHHH---HHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCC--C-C
Q 026239 16 FHVLAVDDSIID---RKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCM--P-G 89 (241)
Q Consensus 16 ~~ILiVdd~~~~---~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~m--p-~ 89 (241)
.+|.+|+-|..- .+-+..+-+..|..+..+.+..+..+.+... ..+|+||+|.-= + +
T Consensus 216 kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~-----------------~~~D~VLIDTAGRs~~d 278 (767)
T PRK14723 216 DQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAAL-----------------GDKHLVLIDTVGMSQRD 278 (767)
T ss_pred CeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHh-----------------cCCCEEEEeCCCCCccC
Confidence 578887766432 2334444455666666667777766666432 235799999732 1 1
Q ss_pred CCHHHHHHHHHhcCCCCCCcEEEEccCCChHHH---HHHHHh----ccccccc
Q 026239 90 MTGYDLLKKIKESSSLRDIPVVIMSSENVPSRI---SRCLEE----GAEEFFL 135 (241)
Q Consensus 90 ~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~---~~~l~~----Ga~~~l~ 135 (241)
..-.+.+..|.... .+.-.++++++....+.+ ...+.. +.+++|.
T Consensus 279 ~~l~eel~~l~~~~-~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~~i~glIl 330 (767)
T PRK14723 279 RNVSEQIAMLCGVG-RPVRRLLLLNAASHGDTLNEVVHAYRHGAGEDVDGCII 330 (767)
T ss_pred HHHHHHHHHHhccC-CCCeEEEEECCCCcHHHHHHHHHHHhhcccCCCCEEEE
Confidence 11234444444322 134456666665444333 344442 4566644
No 380
>PRK01581 speE spermidine synthase; Validated
Probab=59.52 E-value=79 Score=28.40 Aligned_cols=28 Identities=18% Similarity=0.260 Sum_probs=17.5
Q ss_pred ccccEEEEeCCCCCCC------HHHHHHHHHhcC
Q 026239 76 VGVNLVITDYCMPGMT------GYDLLKKIKESS 103 (241)
Q Consensus 76 ~~~dlIilD~~mp~~~------g~~ll~~ir~~~ 103 (241)
..||+||+|+.-|... ..++++.++..-
T Consensus 225 ~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~L 258 (374)
T PRK01581 225 SLYDVIIIDFPDPATELLSTLYTSELFARIATFL 258 (374)
T ss_pred CCccEEEEcCCCccccchhhhhHHHHHHHHHHhc
Confidence 3589999997544221 245666766543
No 381
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=59.39 E-value=87 Score=24.99 Aligned_cols=89 Identities=11% Similarity=0.120 Sum_probs=52.1
Q ss_pred hhcCC-CEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEE
Q 026239 35 LKTSS-YQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIM 113 (241)
Q Consensus 35 L~~~g-~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~~ll~~ir~~~~~~~ipvIil 113 (241)
|...+ +-|....+.+++++.+...-.. . +=++-+.+.+.+..++++.+++..+ .+.+ -.
T Consensus 9 l~~~~~~~v~r~~~~~~~~~~~~~~~~~---------------G--v~~vqlr~k~~~~~e~~~~~~~~~~--~~~~-g~ 68 (187)
T PRK07455 9 LQQHRAIAVIRAPDLELGLQMAEAVAAG---------------G--MRLIEITWNSDQPAELISQLREKLP--ECII-GT 68 (187)
T ss_pred HHhCCEEEEEEcCCHHHHHHHHHHHHHC---------------C--CCEEEEeCCCCCHHHHHHHHHHhCC--CcEE-eE
Confidence 34444 3455667888887776542211 1 4456667777788888888887543 2211 11
Q ss_pred ccCCChHHHHHHHHhcccccccCCCCHHHH
Q 026239 114 SSENVPSRISRCLEEGAEEFFLKPVRLSDL 143 (241)
Q Consensus 114 s~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L 143 (241)
..--..+.+..|++.||+.+++--++.+.+
T Consensus 69 gtvl~~d~~~~A~~~gAdgv~~p~~~~~~~ 98 (187)
T PRK07455 69 GTILTLEDLEEAIAAGAQFCFTPHVDPELI 98 (187)
T ss_pred EEEEcHHHHHHHHHcCCCEEECCCCCHHHH
Confidence 111233677888999997665544555544
No 382
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=59.34 E-value=33 Score=31.71 Aligned_cols=78 Identities=18% Similarity=0.152 Sum_probs=0.0
Q ss_pred CcceEEEEeCCHHHH-HHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCH
Q 026239 14 SQFHVLAVDDSIIDR-KLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTG 92 (241)
Q Consensus 14 ~~~~ILiVdd~~~~~-~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g 92 (241)
..|||+|||..+... ..+-+.|...|+.|+++-=..--.-+.. ++.||+..+---.+|
T Consensus 384 k~frVvVVDSRP~~EG~~~lr~Lv~~GinctYv~I~a~syim~e---------------------vtkvfLGahailsNG 442 (556)
T KOG1467|consen 384 KKFRVVVVDSRPNLEGRKLLRRLVDRGINCTYVLINAASYIMLE---------------------VTKVFLGAHAILSNG 442 (556)
T ss_pred cceEEEEEeCCCCcchHHHHHHHHHcCCCeEEEEehhHHHHHHh---------------------cceeeechhhhhcCc
Q ss_pred H------HHHHHHHhcCCCCCCcEEEEc
Q 026239 93 Y------DLLKKIKESSSLRDIPVVIMS 114 (241)
Q Consensus 93 ~------~ll~~ir~~~~~~~ipvIils 114 (241)
+ ..+=.+-.... ++|||++.
T Consensus 443 ~vysR~GTa~valvAna~--nVPVlVCC 468 (556)
T KOG1467|consen 443 AVYSRVGTACVALVANAF--NVPVLVCC 468 (556)
T ss_pred chhhhcchHHHHHHhccc--CCCEEEEe
No 383
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=59.08 E-value=40 Score=27.47 Aligned_cols=92 Identities=26% Similarity=0.362 Sum_probs=56.3
Q ss_pred eCCHHHHHHHHHHhhcC-CCEEEE------ECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCC-CCHH
Q 026239 22 DDSIIDRKLIERLLKTS-SYQVTT------VDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPG-MTGY 93 (241)
Q Consensus 22 dd~~~~~~~l~~~L~~~-g~~v~~------~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~-~~g~ 93 (241)
+|..++...+++++... |+.++. +.+..+|++.+... .++-|++.=.-+. .+|+
T Consensus 96 ~dg~iD~~~~~~Li~~a~~~~~tFHRAfD~~~d~~~al~~L~~l------------------G~~rVLTSGg~~~a~~g~ 157 (201)
T PF03932_consen 96 EDGEIDEEALEELIEAAGGMPVTFHRAFDEVPDPEEALEQLIEL------------------GFDRVLTSGGAPTALEGI 157 (201)
T ss_dssp TTSSB-HHHHHHHHHHHTTSEEEE-GGGGGSSTHHHHHHHHHHH------------------T-SEEEESTTSSSTTTCH
T ss_pred CCCCcCHHHHHHHHHhcCCCeEEEeCcHHHhCCHHHHHHHHHhc------------------CCCEEECCCCCCCHHHHH
Confidence 46667778888888643 677764 45788899888543 4568888765543 6899
Q ss_pred HHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHH-hccccc
Q 026239 94 DLLKKIKESSSLRDIPVVIMSSENVPSRISRCLE-EGAEEF 133 (241)
Q Consensus 94 ~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~-~Ga~~~ 133 (241)
+.++.+.+... ..+- |+..+.-..+.+....+ .|+..|
T Consensus 158 ~~L~~lv~~a~-~~i~-Im~GgGv~~~nv~~l~~~tg~~~~ 196 (201)
T PF03932_consen 158 ENLKELVEQAK-GRIE-IMPGGGVRAENVPELVEETGVREI 196 (201)
T ss_dssp HHHHHHHHHHT-TSSE-EEEESS--TTTHHHHHHHHT-SEE
T ss_pred HHHHHHHHHcC-CCcE-EEecCCCCHHHHHHHHHhhCCeEE
Confidence 99999876542 1333 33444344455555555 787765
No 384
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=59.06 E-value=35 Score=28.49 Aligned_cols=54 Identities=22% Similarity=0.294 Sum_probs=42.2
Q ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccC
Q 026239 80 LVITDYCMP---GMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLK 136 (241)
Q Consensus 80 lIilD~~mp---~~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~K 136 (241)
+.|.|+.-- ....+++++.+++.. ++||++-.+-.+.+.+.+++..|++..+.-
T Consensus 47 i~i~dl~~~~~~~~~~~~~i~~i~~~~---~ipv~~~GGi~s~~~~~~~l~~Ga~~Viig 103 (253)
T PRK02083 47 LVFLDITASSEGRDTMLDVVERVAEQV---FIPLTVGGGIRSVEDARRLLRAGADKVSIN 103 (253)
T ss_pred EEEEeCCcccccCcchHHHHHHHHHhC---CCCEEeeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 888888753 233577888888753 689999888888999999999998887554
No 385
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=59.04 E-value=57 Score=28.19 Aligned_cols=41 Identities=20% Similarity=0.399 Sum_probs=32.2
Q ss_pred CHHHHHHHHHhcCCCCCCcEEEEccCC-ChHHHHHHHHhccccc
Q 026239 91 TGYDLLKKIKESSSLRDIPVVIMSSEN-VPSRISRCLEEGAEEF 133 (241)
Q Consensus 91 ~g~~ll~~ir~~~~~~~ipvIils~~~-~~~~~~~~l~~Ga~~~ 133 (241)
=++++++.|++... ++|+|+..++. ..+.+.++++.|+..+
T Consensus 188 l~~e~L~~i~~~~~--~iPlVlhGGSGi~~e~~~~~i~~Gi~Ki 229 (293)
T PRK07315 188 LDLDHLEKLTEAVP--GFPIVLHGGSGIPDDQIQEAIKLGVAKV 229 (293)
T ss_pred CCHHHHHHHHHhcc--CCCEEEECCCCCCHHHHHHHHHcCCCEE
Confidence 46899999998642 58999887744 5667888999998765
No 386
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=59.01 E-value=26 Score=29.57 Aligned_cols=72 Identities=14% Similarity=0.264 Sum_probs=52.6
Q ss_pred ECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCC---CHHHHHHHHHhcCCCCCCcEEEEccCCChHH
Q 026239 45 VDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGM---TGYDLLKKIKESSSLRDIPVVIMSSENVPSR 121 (241)
Q Consensus 45 ~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~---~g~~ll~~ir~~~~~~~ipvIils~~~~~~~ 121 (241)
..+..+..+.+.....+ .++++|+.--++ .-+++++.|.+.. .+||++-.+-.+.+.
T Consensus 29 ~~dp~~~a~~~~~~g~~-----------------~l~i~Dl~~~~~~~~~n~~~i~~i~~~~---~~pv~~gGGi~s~~d 88 (258)
T PRK01033 29 IGDPINAVRIFNEKEVD-----------------ELIVLDIDASKRGSEPNYELIENLASEC---FMPLCYGGGIKTLEQ 88 (258)
T ss_pred CCCHHHHHHHHHHcCCC-----------------EEEEEECCCCcCCCcccHHHHHHHHHhC---CCCEEECCCCCCHHH
Confidence 45677766666543332 299999987642 3478999998753 689987777788888
Q ss_pred HHHHHHhcccccccC
Q 026239 122 ISRCLEEGAEEFFLK 136 (241)
Q Consensus 122 ~~~~l~~Ga~~~l~K 136 (241)
+.+++..|++.++.-
T Consensus 89 ~~~l~~~G~~~vvig 103 (258)
T PRK01033 89 AKKIFSLGVEKVSIN 103 (258)
T ss_pred HHHHHHCCCCEEEEC
Confidence 989999999887654
No 387
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=58.84 E-value=85 Score=26.65 Aligned_cols=61 Identities=10% Similarity=0.139 Sum_probs=35.3
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHH
Q 026239 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLM 151 (241)
Q Consensus 79 dlIilD~~mp~~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~ 151 (241)
|++++-... +.-|..+++.+.. .+|||+. ..... .+.+.. .+++..|.+.+++.+.+..++
T Consensus 264 d~~v~~s~~-e~~~~~~~Ea~a~-----G~PvI~~-~~~~~---~e~i~~--~g~~~~~~~~~~~~~~i~~ll 324 (360)
T cd04951 264 DLFVLSSAW-EGFGLVVAEAMAC-----ELPVVAT-DAGGV---REVVGD--SGLIVPISDPEALANKIDEIL 324 (360)
T ss_pred ceEEecccc-cCCChHHHHHHHc-----CCCEEEe-cCCCh---hhEecC--CceEeCCCCHHHHHHHHHHHH
Confidence 466654333 2336667777664 6788753 22221 112222 567788889998887777665
No 388
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=58.77 E-value=75 Score=27.10 Aligned_cols=86 Identities=20% Similarity=0.198 Sum_probs=54.1
Q ss_pred CcceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHH
Q 026239 14 SQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGY 93 (241)
Q Consensus 14 ~~~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~ 93 (241)
.+.++||-.-+.-+-..+.+.|...||+++.+.-..+-|+.+...-.+. -...++++-+|+. +.+..
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~-----------~~v~v~vi~~DLs--~~~~~ 71 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDK-----------TGVEVEVIPADLS--DPEAL 71 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHh-----------hCceEEEEECcCC--ChhHH
Confidence 4578999999999999999999999999997766666666554322110 1123445555554 43444
Q ss_pred -HHHHHHHhcCCCCCCcEEEEc
Q 026239 94 -DLLKKIKESSSLRDIPVVIMS 114 (241)
Q Consensus 94 -~ll~~ir~~~~~~~ipvIils 114 (241)
.+...++.... .+-|+|=.
T Consensus 72 ~~l~~~l~~~~~--~IdvLVNN 91 (265)
T COG0300 72 ERLEDELKERGG--PIDVLVNN 91 (265)
T ss_pred HHHHHHHHhcCC--cccEEEEC
Confidence 44556666532 45565543
No 389
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=58.70 E-value=24 Score=29.58 Aligned_cols=69 Identities=16% Similarity=0.142 Sum_probs=41.5
Q ss_pred ceEEEEeCCHHHHHHHHHHhhcC--C---CEEE-EECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCC
Q 026239 16 FHVLAVDDSIIDRKLIERLLKTS--S---YQVT-TVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPG 89 (241)
Q Consensus 16 ~~ILiVdd~~~~~~~l~~~L~~~--g---~~v~-~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~ 89 (241)
.+|-+||=|+.+.+..++.+... + -++. ...||...++... +..||+||+|..-|.
T Consensus 101 ~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~------------------~~~yDvIi~D~~dp~ 162 (246)
T PF01564_consen 101 ESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQ------------------EEKYDVIIVDLTDPD 162 (246)
T ss_dssp SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSS------------------ST-EEEEEEESSSTT
T ss_pred ceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhcc------------------CCcccEEEEeCCCCC
Confidence 46778888888888777776532 1 1233 4556655554321 116999999998876
Q ss_pred CCH-----HHHHHHHHhc
Q 026239 90 MTG-----YDLLKKIKES 102 (241)
Q Consensus 90 ~~g-----~~ll~~ir~~ 102 (241)
..+ .++.+.+++.
T Consensus 163 ~~~~~l~t~ef~~~~~~~ 180 (246)
T PF01564_consen 163 GPAPNLFTREFYQLCKRR 180 (246)
T ss_dssp SCGGGGSSHHHHHHHHHH
T ss_pred CCcccccCHHHHHHHHhh
Confidence 443 3566666553
No 390
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=58.70 E-value=33 Score=30.30 Aligned_cols=54 Identities=13% Similarity=0.124 Sum_probs=38.9
Q ss_pred cccEEEEeCCCCCC-CHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhccccc
Q 026239 77 GVNLVITDYCMPGM-TGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEF 133 (241)
Q Consensus 77 ~~dlIilD~~mp~~-~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~ 133 (241)
.+|+|++|..-... .-++++++||+..+ +++|| ...-...+.....+++|||..
T Consensus 122 g~D~iviD~AhGhs~~~i~~ik~ik~~~P--~~~vI-aGNV~T~e~a~~Li~aGAD~v 176 (346)
T PRK05096 122 ALNFICIDVANGYSEHFVQFVAKAREAWP--DKTIC-AGNVVTGEMVEELILSGADIV 176 (346)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHHHhCC--CCcEE-EecccCHHHHHHHHHcCCCEE
Confidence 57899999876543 34678999998654 66644 444556777788889999965
No 391
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=58.69 E-value=65 Score=29.77 Aligned_cols=96 Identities=18% Similarity=0.252 Sum_probs=54.3
Q ss_pred CCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCH----HHHH--
Q 026239 23 DSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTG----YDLL-- 96 (241)
Q Consensus 23 d~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g----~~ll-- 96 (241)
-+....+.+...|...||.++. + ....|+||+..|-.-.+. ...+
T Consensus 35 ~N~~dse~~~~~l~~~G~~~~~--~---------------------------~~~ADiviiNTC~v~~~a~~k~~~~i~~ 85 (467)
T PRK14329 35 MNFADSEIVASILQMAGYNTTE--N---------------------------LEEADLVLVNTCSIRDNAEQKVRKRLEK 85 (467)
T ss_pred CcHHHHHHHHHHHHHCcCEECC--C---------------------------cccCCEEEEeCcceechHHHHHHHHHHH
Confidence 4555666677777777776542 0 112579999998775332 3333
Q ss_pred -HHHHhcCCCCCCcEEEEccCCChHHHHHHHHh-cccccccCCCCHHHHHHhhHHH
Q 026239 97 -KKIKESSSLRDIPVVIMSSENVPSRISRCLEE-GAEEFFLKPVRLSDLNKLKPHL 150 (241)
Q Consensus 97 -~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~-Ga~~~l~KP~~~~~L~~~~~~l 150 (241)
+.+++..+ +.+|| +++......-...++. +..||+..+-....+..++..+
T Consensus 86 ~~~~k~~~p--~~~iv-vgGc~a~~~~~~~l~~~~~vD~vv~~e~~~~i~~ll~~~ 138 (467)
T PRK14329 86 FNALKKKNP--KLIVG-VLGCMAERLKDKLLEEEKIVDLVVGPDAYLDLPNLIAEV 138 (467)
T ss_pred HHHHHhhCC--CcEEE-EECChhcCcHHHHHhcCCCceEEECCCCHHHHHHHHHHH
Confidence 44455433 55555 4443222222334444 4368888888877777666554
No 392
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=58.60 E-value=41 Score=31.22 Aligned_cols=55 Identities=18% Similarity=0.332 Sum_probs=40.2
Q ss_pred ccccEEEEeCCCC-CCCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhccccc
Q 026239 76 VGVNLVITDYCMP-GMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEF 133 (241)
Q Consensus 76 ~~~dlIilD~~mp-~~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~ 133 (241)
..+|+|++|..-. ...-++.+++|+...+ ++|||+ ..-.+.+.+..+.++||+.+
T Consensus 239 agvdvivvD~a~g~~~~vl~~i~~i~~~~p--~~~vi~-g~v~t~e~a~~l~~aGad~i 294 (486)
T PRK05567 239 AGVDVLVVDTAHGHSEGVLDRVREIKAKYP--DVQIIA-GNVATAEAARALIEAGADAV 294 (486)
T ss_pred hCCCEEEEECCCCcchhHHHHHHHHHhhCC--CCCEEE-eccCCHHHHHHHHHcCCCEE
Confidence 3467999987533 2456788899987643 788876 55567788889999999876
No 393
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=58.59 E-value=48 Score=28.88 Aligned_cols=62 Identities=24% Similarity=0.219 Sum_probs=41.0
Q ss_pred eEEEEeCCHHHHHHHHHHhhcC--CC---EEE-EECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCC
Q 026239 17 HVLAVDDSIIDRKLIERLLKTS--SY---QVT-TVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGM 90 (241)
Q Consensus 17 ~ILiVdd~~~~~~~l~~~L~~~--g~---~v~-~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~ 90 (241)
.|+++|-|..+.+.=..++... || .|. ...||-..++.+. +.++|+||+|..-|.+
T Consensus 147 ~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~------------------~~~~dVii~dssdpvg 208 (337)
T KOG1562|consen 147 NILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLK------------------ENPFDVIITDSSDPVG 208 (337)
T ss_pred ceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhc------------------cCCceEEEEecCCccc
Confidence 4677776666666555555432 34 444 4557777777663 3457799999999988
Q ss_pred CHHHHH
Q 026239 91 TGYDLL 96 (241)
Q Consensus 91 ~g~~ll 96 (241)
.+..+.
T Consensus 209 pa~~lf 214 (337)
T KOG1562|consen 209 PACALF 214 (337)
T ss_pred hHHHHH
Confidence 886543
No 394
>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.
Probab=58.52 E-value=78 Score=25.81 Aligned_cols=38 Identities=18% Similarity=0.375 Sum_probs=29.2
Q ss_pred HHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhccccccc
Q 026239 93 YDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFL 135 (241)
Q Consensus 93 ~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~ 135 (241)
-++++.++.. .++|.+.|- ++.+.+.+++..|++++++
T Consensus 190 ~~~i~~~~~~----g~~v~~Wtv-n~~~~~~~~~~~GVdgi~T 227 (230)
T cd08563 190 EEVVEELKKR----GIPVRLWTV-NEEEDMKRLKDLGVDGIIT 227 (230)
T ss_pred HHHHHHHHHC----CCEEEEEec-CCHHHHHHHHHCCCCEEeC
Confidence 3567777764 568888875 4678888999999999876
No 395
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=58.37 E-value=1.1e+02 Score=27.76 Aligned_cols=41 Identities=12% Similarity=0.209 Sum_probs=31.6
Q ss_pred HHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhccccc
Q 026239 93 YDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEF 133 (241)
Q Consensus 93 ~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~ 133 (241)
++.++.+++.....++|||...+-.+.+.+.+.+.+||+.+
T Consensus 239 l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~V 279 (420)
T PRK08318 239 LNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTV 279 (420)
T ss_pred HHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChh
Confidence 55666666542112799999999999999999999999876
No 396
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=58.32 E-value=35 Score=29.17 Aligned_cols=38 Identities=13% Similarity=0.236 Sum_probs=32.2
Q ss_pred HHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhccccc
Q 026239 93 YDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEF 133 (241)
Q Consensus 93 ~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~ 133 (241)
+++++.+++.. ++|||...+-.+.+.+.+++.+||+.+
T Consensus 220 ~~~i~~i~~~~---~ipii~~GGI~~~~da~~~l~~GAd~V 257 (296)
T cd04740 220 LRMVYQVYKAV---EIPIIGVGGIASGEDALEFLMAGASAV 257 (296)
T ss_pred HHHHHHHHHhc---CCCEEEECCCCCHHHHHHHHHcCCCEE
Confidence 57888888753 699999988889999999999999765
No 397
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=58.23 E-value=1.2e+02 Score=26.41 Aligned_cols=67 Identities=10% Similarity=0.127 Sum_probs=42.8
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHHHHH
Q 026239 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMKTK 154 (241)
Q Consensus 79 dlIilD~~mp~~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~~~~ 154 (241)
|++++-.. ...-|+.+++.+.. .+|||..-..... .+.+..|..+++..|.+.++|...+..++...
T Consensus 259 d~~v~~s~-~Egf~~~~lEAma~-----G~Pvv~s~~~~g~---~eiv~~~~~G~lv~~~d~~~la~~i~~l~~~~ 325 (359)
T PRK09922 259 SALLLTSK-FEGFPMTLLEAMSY-----GIPCISSDCMSGP---RDIIKPGLNGELYTPGNIDEFVGKLNKVISGE 325 (359)
T ss_pred cEEEECCc-ccCcChHHHHHHHc-----CCCEEEeCCCCCh---HHHccCCCceEEECCCCHHHHHHHHHHHHhCc
Confidence 46665322 22336777777764 6788754312322 34566788999999999999987777765443
No 398
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=58.23 E-value=64 Score=22.87 Aligned_cols=38 Identities=24% Similarity=0.358 Sum_probs=27.3
Q ss_pred EEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhc
Q 026239 18 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLG 56 (241)
Q Consensus 18 ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~ 56 (241)
|+|+.-+...+..++.+.+ .++.|+.++...+..+.+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~-~~~~vvvid~d~~~~~~~~ 38 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKE-GGIDVVVIDRDPERVEELR 38 (116)
T ss_dssp EEEES-SHHHHHHHHHHHH-TTSEEEEEESSHHHHHHHH
T ss_pred eEEEcCCHHHHHHHHHHHh-CCCEEEEEECCcHHHHHHH
Confidence 6788888887777776666 6778888877766666664
No 399
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=58.05 E-value=32 Score=34.57 Aligned_cols=73 Identities=14% Similarity=0.295 Sum_probs=46.1
Q ss_pred ccccEEEEe-CCCCCCCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHH
Q 026239 76 VGVNLVITD-YCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLM 151 (241)
Q Consensus 76 ~~~dlIilD-~~mp~~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~ 151 (241)
..+.|+|+| .+|-..+....+-++-+..+ .++.+|+.|.. ...+...+...+.-|-++|++.+++...+.+++
T Consensus 118 gk~KViIIDEAh~LT~eAqNALLKtLEEPP-~~vrFILaTTe--~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il 191 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSSFNALLKTLEEPP-EHVKFLLATTD--PQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHIL 191 (944)
T ss_pred CCcEEEEEechHhcCHHHHHHHHHHHhccC-CCeEEEEECCC--chhchHHHHHhheEEeCCCCCHHHHHHHHHHHH
Confidence 346699998 45544445554444444332 35666666544 334555666677889999999999977666654
No 400
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=57.73 E-value=1.2e+02 Score=25.86 Aligned_cols=101 Identities=13% Similarity=0.176 Sum_probs=64.1
Q ss_pred eEEEEeCCHHHHHHHHHHhhcCCCEEE-EE--CCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeC------CC
Q 026239 17 HVLAVDDSIIDRKLIERLLKTSSYQVT-TV--DSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDY------CM 87 (241)
Q Consensus 17 ~ILiVdd~~~~~~~l~~~L~~~g~~v~-~~--~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~------~m 87 (241)
-+||+|=.......+....+..|...+ .+ ++..+-++.+...... | +..+.. ..
T Consensus 125 GlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~G----------------F-iY~vs~~GvTG~~~ 187 (265)
T COG0159 125 GLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAASG----------------F-IYYVSRMGVTGARN 187 (265)
T ss_pred EEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCC----------------c-EEEEecccccCCCc
Confidence 356666666666667777777776544 22 3555666666543321 1 333322 22
Q ss_pred CCC-CHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCC
Q 026239 88 PGM-TGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPV 138 (241)
Q Consensus 88 p~~-~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~ 138 (241)
+.. .-.++++++|+.. ++||++==+-.+++.+.+..+. ||+++.-.-
T Consensus 188 ~~~~~~~~~v~~vr~~~---~~Pv~vGFGIs~~e~~~~v~~~-ADGVIVGSA 235 (265)
T COG0159 188 PVSADVKELVKRVRKYT---DVPVLVGFGISSPEQAAQVAEA-ADGVIVGSA 235 (265)
T ss_pred ccchhHHHHHHHHHHhc---CCCeEEecCcCCHHHHHHHHHh-CCeEEEcHH
Confidence 211 1356788888754 8999987777888899888888 999988753
No 401
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=57.65 E-value=1.2e+02 Score=27.38 Aligned_cols=33 Identities=15% Similarity=0.277 Sum_probs=12.9
Q ss_pred ceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCH
Q 026239 16 FHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSG 48 (241)
Q Consensus 16 ~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~ 48 (241)
.+|||+.--..-+.....+..+..++|+.++-.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs 34 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRS 34 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCC
Confidence 345555553333332222222222555554433
No 402
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=57.56 E-value=1e+02 Score=24.97 Aligned_cols=40 Identities=30% Similarity=0.523 Sum_probs=31.9
Q ss_pred CHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHh-ccccc
Q 026239 91 TGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEE-GAEEF 133 (241)
Q Consensus 91 ~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~-Ga~~~ 133 (241)
..++.++.+++.. ++||+...+-.+.+.+.+++.. ||+.+
T Consensus 170 ~~~~~~~~i~~~~---~ipvi~~Ggi~~~~d~~~~l~~~gad~V 210 (231)
T cd02801 170 ADWDYIAEIKEAV---SIPVIANGDIFSLEDALRCLEQTGVDGV 210 (231)
T ss_pred CCHHHHHHHHhCC---CCeEEEeCCCCCHHHHHHHHHhcCCCEE
Confidence 3578888888743 7899988888888999999998 77764
No 403
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=57.54 E-value=8.7 Score=30.57 Aligned_cols=61 Identities=21% Similarity=0.373 Sum_probs=39.7
Q ss_pred HHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHH
Q 026239 48 GSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLE 127 (241)
Q Consensus 48 ~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~ 127 (241)
.+.+++.++...|| +|=+ ||+ --..+++++++.. ++|||.=.--.+.+.+.++++
T Consensus 106 l~~~~~~i~~~~PD------------------~vEi---lPg-~~p~vi~~i~~~~---~~PiIAGGLI~~~e~v~~al~ 160 (175)
T PF04309_consen 106 LETGIKQIEQSKPD------------------AVEI---LPG-VMPKVIKKIREET---NIPIIAGGLIRTKEDVEEALK 160 (175)
T ss_dssp HHHHHHHHHHHT-S------------------EEEE---ESC-CHHHHHCCCCCCC---SS-EEEESS--SHHHHHHHCC
T ss_pred HHHHHHHHhhcCCC------------------EEEE---chH-HHHHHHHHHHHhc---CCCEEeecccCCHHHHHHHHH
Confidence 44566777666555 5543 787 5556777776643 688876555678889999999
Q ss_pred hccccc
Q 026239 128 EGAEEF 133 (241)
Q Consensus 128 ~Ga~~~ 133 (241)
+||.+.
T Consensus 161 aGa~aV 166 (175)
T PF04309_consen 161 AGADAV 166 (175)
T ss_dssp TTCEEE
T ss_pred cCCEEE
Confidence 999875
No 404
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=57.45 E-value=1.1e+02 Score=27.04 Aligned_cols=92 Identities=16% Similarity=0.230 Sum_probs=59.3
Q ss_pred HHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHHHHHHHHHhcCCCCC
Q 026239 28 RKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRD 107 (241)
Q Consensus 28 ~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~~ll~~ir~~~~~~~ 107 (241)
...|....+..|..+.+-.-..++++++... ++-++=+.-.+++-+.|++.+... .
T Consensus 78 ~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~--------------------~v~~~KIaS~~~~n~pLL~~~A~~----g 133 (329)
T TIGR03569 78 HRELKEYCESKGIEFLSTPFDLESADFLEDL--------------------GVPRFKIPSGEITNAPLLKKIARF----G 133 (329)
T ss_pred HHHHHHHHHHhCCcEEEEeCCHHHHHHHHhc--------------------CCCEEEECcccccCHHHHHHHHhc----C
Confidence 3345555566787766555556667777432 233555566678889999999874 5
Q ss_pred CcEEEEccCCChHHHHHHH----Hhcccc--ccc------CCCCHHHH
Q 026239 108 IPVVIMSSENVPSRISRCL----EEGAEE--FFL------KPVRLSDL 143 (241)
Q Consensus 108 ipvIils~~~~~~~~~~~l----~~Ga~~--~l~------KP~~~~~L 143 (241)
.|||+=|+..+.+.+..+. +.|..+ +++ .|...+++
T Consensus 134 kPvilStGmatl~Ei~~Av~~i~~~G~~~~~i~llhC~s~YP~~~~~~ 181 (329)
T TIGR03569 134 KPVILSTGMATLEEIEAAVGVLRDAGTPDSNITLLHCTTEYPAPFEDV 181 (329)
T ss_pred CcEEEECCCCCHHHHHHHHHHHHHcCCCcCcEEEEEECCCCCCCcccC
Confidence 6999989888777766654 355542 433 47666665
No 405
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=57.38 E-value=58 Score=26.78 Aligned_cols=17 Identities=18% Similarity=0.151 Sum_probs=9.2
Q ss_pred HHHHHHhhcCCCEEEEE
Q 026239 29 KLIERLLKTSSYQVTTV 45 (241)
Q Consensus 29 ~~l~~~L~~~g~~v~~~ 45 (241)
..+...++..||.+.++
T Consensus 30 ~gi~~~~~~~g~~~~v~ 46 (275)
T cd06295 30 GGIADALAERGYDLLLS 46 (275)
T ss_pred HHHHHHHHHcCCEEEEE
Confidence 33555555566665543
No 406
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=57.23 E-value=82 Score=23.78 Aligned_cols=111 Identities=13% Similarity=0.273 Sum_probs=64.7
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhcCCC--EEEEECC--HHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCC
Q 026239 13 ESQFHVLAVDDSIIDRKLIERLLKTSSY--QVTTVDS--GSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMP 88 (241)
Q Consensus 13 ~~~~~ILiVdd~~~~~~~l~~~L~~~g~--~v~~~~~--~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp 88 (241)
...+.++|+++...... +....+..+. .+..+.. .++..+++.. .|++++=...
T Consensus 45 ~~~~~l~i~G~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~--------------------~di~v~~s~~- 102 (172)
T PF00534_consen 45 NPNYKLVIVGDGEYKKE-LKNLIEKLNLKENIIFLGYVPDDELDELYKS--------------------SDIFVSPSRN- 102 (172)
T ss_dssp HTTEEEEEESHCCHHHH-HHHHHHHTTCGTTEEEEESHSHHHHHHHHHH--------------------TSEEEE-BSS-
T ss_pred CCCeEEEEEcccccccc-ccccccccccccccccccccccccccccccc--------------------ceeccccccc-
Confidence 34577888874333222 3333333332 3444433 3456666543 2466665444
Q ss_pred CCCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHHHHH
Q 026239 89 GMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMKTK 154 (241)
Q Consensus 89 ~~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~~~~ 154 (241)
+.-|..+++.+.. .+|+|+. .. ....+.+..|..+|+..+.+..++...+..++...
T Consensus 103 e~~~~~~~Ea~~~-----g~pvI~~-~~---~~~~e~~~~~~~g~~~~~~~~~~l~~~i~~~l~~~ 159 (172)
T PF00534_consen 103 EGFGLSLLEAMAC-----GCPVIAS-DI---GGNNEIINDGVNGFLFDPNDIEELADAIEKLLNDP 159 (172)
T ss_dssp BSS-HHHHHHHHT-----T-EEEEE-SS---THHHHHSGTTTSEEEESTTSHHHHHHHHHHHHHHH
T ss_pred ccccccccccccc-----ccceeec-cc---cCCceeeccccceEEeCCCCHHHHHHHHHHHHCCH
Confidence 5567778887764 5677743 32 23346677788999999999999988777776654
No 407
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=56.87 E-value=34 Score=29.01 Aligned_cols=80 Identities=15% Similarity=0.238 Sum_probs=43.2
Q ss_pred CcceEEEEeCCHHHH-HHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCC--
Q 026239 14 SQFHVLAVDDSIIDR-KLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGM-- 90 (241)
Q Consensus 14 ~~~~ILiVdd~~~~~-~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~-- 90 (241)
..++|.|+|..|... ..+.+.|...|+.|+...+..-+. .+.. .+|.||+..+.--.
T Consensus 132 ~~~~V~v~es~P~~eG~~~a~~L~~~gi~v~~i~d~~~~~-~m~~-------------------~vd~VliGad~v~~nG 191 (282)
T PF01008_consen 132 KKFRVIVLESRPYNEGRLMAKELAEAGIPVTLIPDSAVGY-VMPR-------------------DVDKVLIGADAVLANG 191 (282)
T ss_dssp EEEEEEEE--TTTTHHHTHHHHHHHTT-EEEEE-GGGHHH-HHHC-------------------TESEEEEE-SEEETTS
T ss_pred CeEEEEEccCCcchhhhhHHHHhhhcceeEEEEechHHHH-HHHH-------------------hCCeeEEeeeEEecCC
Confidence 468999999887533 245566777899998776654332 2321 25688887654322
Q ss_pred -----CHHHHHHHHHhcCCCCCCcEEEEccC
Q 026239 91 -----TGYDLLKKIKESSSLRDIPVVIMSSE 116 (241)
Q Consensus 91 -----~g~~ll~~ir~~~~~~~ipvIils~~ 116 (241)
.|.-.+..+-+.. ++||++++..
T Consensus 192 ~v~nk~Gt~~~a~~Ak~~---~vPv~v~~~~ 219 (282)
T PF01008_consen 192 GVVNKVGTLQLALAAKEF---NVPVYVLAES 219 (282)
T ss_dssp -EEEETTHHHHHHHHHHT---T-EEEEE--G
T ss_pred CEeehhhHHHHHHHHHhh---CCCEEEEccc
Confidence 3444444444332 7999999764
No 408
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=56.78 E-value=1.5e+02 Score=26.59 Aligned_cols=55 Identities=20% Similarity=0.280 Sum_probs=36.7
Q ss_pred ccccEEEEeCCC-------CCCCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhccccccc
Q 026239 76 VGVNLVITDYCM-------PGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFL 135 (241)
Q Consensus 76 ~~~dlIilD~~m-------p~~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~ 135 (241)
..+|+|.++... +..+..++.+.+++. ++|||. ..-.+.+.+..++++|||.++.
T Consensus 153 aGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~----~ipVIa-G~V~t~e~A~~l~~aGAD~V~V 214 (368)
T PRK08649 153 AGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYEL----DVPVIV-GGCVTYTTALHLMRTGAAGVLV 214 (368)
T ss_pred CCCCEEEEeccchhhhccCCcCCHHHHHHHHHHC----CCCEEE-eCCCCHHHHHHHHHcCCCEEEE
Confidence 346799997542 222456666666652 688876 4455677788899999998744
No 409
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=56.72 E-value=1e+02 Score=24.62 Aligned_cols=83 Identities=16% Similarity=0.095 Sum_probs=50.5
Q ss_pred ceEEEEeCCHHHHHHHHHHhhcCCCE--EE-EECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCH
Q 026239 16 FHVLAVDDSIIDRKLIERLLKTSSYQ--VT-TVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTG 92 (241)
Q Consensus 16 ~~ILiVdd~~~~~~~l~~~L~~~g~~--v~-~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g 92 (241)
-+|..||.++.....+++-++..++. +. ...+..+++..+... ...+|+|++|=-......
T Consensus 73 ~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~----------------~~~~dvv~~DPPy~~~~~ 136 (189)
T TIGR00095 73 KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKK----------------PTFDNVIYLDPPFFNGAL 136 (189)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhcc----------------CCCceEEEECcCCCCCcH
Confidence 47999999999999998888777653 33 344554555433111 113679999865443334
Q ss_pred HHHHHHHHhcCCCCCCcEEEEc
Q 026239 93 YDLLKKIKESSSLRDIPVVIMS 114 (241)
Q Consensus 93 ~~ll~~ir~~~~~~~ipvIils 114 (241)
.+++..+....-...--+|++-
T Consensus 137 ~~~l~~l~~~~~l~~~~iiv~E 158 (189)
T TIGR00095 137 QALLELCENNWILEDTVLIVVE 158 (189)
T ss_pred HHHHHHHHHCCCCCCCeEEEEE
Confidence 4566666554433344455554
No 410
>PRK08185 hypothetical protein; Provisional
Probab=56.70 E-value=69 Score=27.57 Aligned_cols=41 Identities=32% Similarity=0.568 Sum_probs=30.9
Q ss_pred CCCCHHHHHHHHHhcCCCCCCcEEEEccCC-ChHHHHHHHHhcccc
Q 026239 88 PGMTGYDLLKKIKESSSLRDIPVVIMSSEN-VPSRISRCLEEGAEE 132 (241)
Q Consensus 88 p~~~g~~ll~~ir~~~~~~~ipvIils~~~-~~~~~~~~l~~Ga~~ 132 (241)
|+.+ +++++.|++.. ++|+++..+.+ ..+.+.+|.+.|+.-
T Consensus 183 p~L~-~e~l~~I~~~~---~iPLVlHGgsg~~~e~~~~ai~~GI~K 224 (283)
T PRK08185 183 PELQ-MDLLKEINERV---DIPLVLHGGSANPDAEIAESVQLGVGK 224 (283)
T ss_pred CCcC-HHHHHHHHHhh---CCCEEEECCCCCCHHHHHHHHHCCCeE
Confidence 4555 89999998753 79999998765 456677888998643
No 411
>PRK10537 voltage-gated potassium channel; Provisional
Probab=56.65 E-value=1.1e+02 Score=27.57 Aligned_cols=114 Identities=13% Similarity=0.050 Sum_probs=54.8
Q ss_pred cceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCc---ccccccEEEEeCCCCCCC
Q 026239 15 QFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMH---QEVGVNLVITDYCMPGMT 91 (241)
Q Consensus 15 ~~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~---~~~~~dlIilD~~mp~~~ 91 (241)
+-||+|+.-...-+..++. |...|+.++.++.... +.......+.-.+.+..+... .=.+.+.||+-.. .+.+
T Consensus 240 k~HvII~G~g~lg~~v~~~-L~~~g~~vvVId~d~~--~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~-dD~~ 315 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLG-LRQRGQAVTVIVPLGL--EHRLPDDADLIPGDSSDSAVLKKAGAARARAILALRD-NDAD 315 (393)
T ss_pred CCeEEEECCChHHHHHHHH-HHHCCCCEEEEECchh--hhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCC-ChHH
Confidence 4578899888877776655 4455666654442211 111100000000000000000 0112345554321 1223
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccC
Q 026239 92 GYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLK 136 (241)
Q Consensus 92 g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~K 136 (241)
..-++-.+|+..+ ++++|+.+.. ++......+.|++..+.-
T Consensus 316 Nl~ivL~ar~l~p--~~kIIa~v~~--~~~~~~L~~~GaD~VIsp 356 (393)
T PRK10537 316 NAFVVLAAKEMSS--DVKTVAAVND--SKNLEKIKRVHPDMIFSP 356 (393)
T ss_pred HHHHHHHHHHhCC--CCcEEEEECC--HHHHHHHHhcCCCEEECH
Confidence 3445555676654 7788876654 455666778999776553
No 412
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=56.44 E-value=65 Score=26.58 Aligned_cols=58 Identities=29% Similarity=0.302 Sum_probs=41.4
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEccCCCh-----HHHHHHHHhcccccccCCCC
Q 026239 77 GVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVP-----SRISRCLEEGAEEFFLKPVR 139 (241)
Q Consensus 77 ~~dlIilD~~mp~~~g~~ll~~ir~~~~~~~ipvIils~~~~~-----~~~~~~l~~Ga~~~l~KP~~ 139 (241)
..||+|+=..-|+ -.+++++.+++. .++.|++.+.... .....+-+.|.+-++.||+-
T Consensus 51 ~~Dl~I~y~lHPD-l~~~l~~~~~e~----g~kavIvp~~~~~~g~~~~lk~~~e~~gi~~~~P~~~C 113 (217)
T PF02593_consen 51 EADLLIAYGLHPD-LTYELPEIAKEA----GVKAVIVPSESPKPGLRRQLKKQLEEFGIEVEFPKPFC 113 (217)
T ss_pred CCCEEEEeccCch-hHHHHHHHHHHc----CCCEEEEecCCCccchHHHHHHHHHhcCceeecCcccc
Confidence 3578777444454 457899999874 4567777666555 66777788899999999973
No 413
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=56.43 E-value=53 Score=27.33 Aligned_cols=62 Identities=23% Similarity=0.295 Sum_probs=44.0
Q ss_pred EEEEeCCCCCC---CHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHH---hcccccc------cCCCCHHHHH
Q 026239 80 LVITDYCMPGM---TGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLE---EGAEEFF------LKPVRLSDLN 144 (241)
Q Consensus 80 lIilD~~mp~~---~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~---~Ga~~~l------~KP~~~~~L~ 144 (241)
++++|...-++ ..+++++.+++.. ++|||+-.+-.+.+.+.++++ .|+++++ ..+++++++.
T Consensus 163 iiv~~~~~~g~~~G~d~~~i~~i~~~~---~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~~~g~~~~~~~~ 236 (241)
T PRK14024 163 YVVTDVTKDGTLTGPNLELLREVCART---DAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKALYAGAFTLPEAL 236 (241)
T ss_pred EEEEeecCCCCccCCCHHHHHHHHhhC---CCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHHHcCCCCHHHHH
Confidence 88888865432 2478888988753 789998877788888877754 4888764 4566666653
No 414
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=56.27 E-value=60 Score=25.82 Aligned_cols=58 Identities=21% Similarity=0.288 Sum_probs=35.8
Q ss_pred ccEEEEeCCCCCCCH-------HHHHHHHHhcCC--CCCCcEEEEccCCChHHHHHHHHhcccccccC
Q 026239 78 VNLVITDYCMPGMTG-------YDLLKKIKESSS--LRDIPVVIMSSENVPSRISRCLEEGAEEFFLK 136 (241)
Q Consensus 78 ~dlIilD~~mp~~~g-------~~ll~~ir~~~~--~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~K 136 (241)
+|.|+++-..|+.+| ++.++++++... ..++||++..+ -..+.+..+++.|++.++.-
T Consensus 128 ~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GG-I~~env~~~~~~gad~iivg 194 (211)
T cd00429 128 VDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGG-INLETIPLLAEAGADVLVAG 194 (211)
T ss_pred CCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECC-CCHHHHHHHHHcCCCEEEEC
Confidence 467777665565444 345555554321 11367765554 45688889999999988653
No 415
>PRK00811 spermidine synthase; Provisional
Probab=56.22 E-value=1.3e+02 Score=25.70 Aligned_cols=69 Identities=14% Similarity=0.120 Sum_probs=39.5
Q ss_pred ceEEEEeCCHHHHHHHHHHhhcC------CCEEE-EECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCC
Q 026239 16 FHVLAVDDSIIDRKLIERLLKTS------SYQVT-TVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMP 88 (241)
Q Consensus 16 ~~ILiVdd~~~~~~~l~~~L~~~------g~~v~-~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp 88 (241)
-+|.+||=|+.+.+..++.|... .-.|. ...|+.+.+.. ....||+||+|..-|
T Consensus 101 ~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~-------------------~~~~yDvIi~D~~dp 161 (283)
T PRK00811 101 EKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE-------------------TENSFDVIIVDSTDP 161 (283)
T ss_pred CEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh-------------------CCCcccEEEECCCCC
Confidence 46777887777777777766432 11233 34454443322 123589999998766
Q ss_pred CCC-----HHHHHHHHHhcC
Q 026239 89 GMT-----GYDLLKKIKESS 103 (241)
Q Consensus 89 ~~~-----g~~ll~~ir~~~ 103 (241)
... ..++++.++...
T Consensus 162 ~~~~~~l~t~ef~~~~~~~L 181 (283)
T PRK00811 162 VGPAEGLFTKEFYENCKRAL 181 (283)
T ss_pred CCchhhhhHHHHHHHHHHhc
Confidence 422 245566666543
No 416
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=56.22 E-value=28 Score=28.39 Aligned_cols=39 Identities=13% Similarity=0.137 Sum_probs=34.0
Q ss_pred cceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHH
Q 026239 15 QFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALE 53 (241)
Q Consensus 15 ~~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~ 53 (241)
+++|.|||=.......+.+.|++.|+++.+.++.++...
T Consensus 1 m~~i~IIDyg~GNL~Sv~~Aler~G~~~~vs~d~~~i~~ 39 (204)
T COG0118 1 MMMVAIIDYGSGNLRSVKKALERLGAEVVVSRDPEEILK 39 (204)
T ss_pred CCEEEEEEcCcchHHHHHHHHHHcCCeeEEecCHHHHhh
Confidence 368999999988999999999999999999988888543
No 417
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=56.11 E-value=69 Score=26.27 Aligned_cols=20 Identities=5% Similarity=-0.042 Sum_probs=9.0
Q ss_pred HHHHHHHHhcCCCCCCcEEEEcc
Q 026239 93 YDLLKKIKESSSLRDIPVVIMSS 115 (241)
Q Consensus 93 ~~ll~~ir~~~~~~~ipvIils~ 115 (241)
..+++.|.+.+ .-.|+++++
T Consensus 111 ~~~~~~l~~~g---~~~i~~i~~ 130 (273)
T cd06292 111 RLAVRHLVALG---HRRIGFASG 130 (273)
T ss_pred HHHHHHHHHCC---CceEEEEeC
Confidence 34445554432 344555544
No 418
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=55.96 E-value=92 Score=27.81 Aligned_cols=64 Identities=19% Similarity=0.148 Sum_probs=40.2
Q ss_pred ceEEEEeCCHHH-----HHHHHHHhhcCCCEEEEEC---------CHHHHHHHhcccCCCCCCCCCCCCCCcccccccEE
Q 026239 16 FHVLAVDDSIID-----RKLIERLLKTSSYQVTTVD---------SGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLV 81 (241)
Q Consensus 16 ~~ILiVdd~~~~-----~~~l~~~L~~~g~~v~~~~---------~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlI 81 (241)
-|+|||-|.... ...+...|+..|+.+..++ +..++++.++.. .+|+|
T Consensus 29 ~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~------------------~~D~I 90 (382)
T cd08187 29 KKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRLETVREGIELCKEE------------------KVDFI 90 (382)
T ss_pred CEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHHc------------------CCCEE
Confidence 588888775433 3567778888787766553 234556666443 35577
Q ss_pred EEeCCCCCCCHHHHHHHHH
Q 026239 82 ITDYCMPGMTGYDLLKKIK 100 (241)
Q Consensus 82 ilD~~mp~~~g~~ll~~ir 100 (241)
|- +.|.+-+|+.|.+.
T Consensus 91 Ia---iGGGS~iD~aK~ia 106 (382)
T cd08187 91 LA---VGGGSVIDSAKAIA 106 (382)
T ss_pred EE---eCChHHHHHHHHHH
Confidence 63 45667777777654
No 419
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=55.93 E-value=48 Score=27.41 Aligned_cols=57 Identities=14% Similarity=0.304 Sum_probs=43.0
Q ss_pred ccEEEEeCCCCCC-CHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCC
Q 026239 78 VNLVITDYCMPGM-TGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPV 138 (241)
Q Consensus 78 ~dlIilD~~mp~~-~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~ 138 (241)
+.+|-+| -.+. ...++++.+++... ++|+++=.+-.+.+.+..++++||+.++.-..
T Consensus 149 ~~ivyLe--~SG~~~~~e~I~~v~~~~~--~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGsa 206 (219)
T cd02812 149 MPIVYLE--YSGAYGPPEVVRAVKKVLG--DTPLIVGGGIRSGEQAKEMAEAGADTIVVGNI 206 (219)
T ss_pred CeEEEeC--CCCCcCCHHHHHHHHHhcC--CCCEEEeCCCCCHHHHHHHHHcCCCEEEECch
Confidence 4577777 2232 34789999988532 68999877777889999999999999887664
No 420
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=55.75 E-value=1.4e+02 Score=26.09 Aligned_cols=39 Identities=15% Similarity=0.352 Sum_probs=32.2
Q ss_pred HHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccc
Q 026239 93 YDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFF 134 (241)
Q Consensus 93 ~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l 134 (241)
+++++.||+.. ++||++...-.+.+.+.++++.|..|++
T Consensus 281 ~~~~~~ik~~v---~iPVi~~G~i~t~~~a~~~l~~g~aD~V 319 (338)
T cd04733 281 LEFAEKIRKVT---KTPLMVTGGFRTRAAMEQALASGAVDGI 319 (338)
T ss_pred HHHHHHHHHHc---CCCEEEeCCCCCHHHHHHHHHcCCCCee
Confidence 57888898753 7899998888889999999999976664
No 421
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=55.70 E-value=11 Score=28.11 Aligned_cols=32 Identities=19% Similarity=0.411 Sum_probs=26.6
Q ss_pred EEEccCCChHHHHHHHHhcccccccCCCCHHH
Q 026239 111 VIMSSENVPSRISRCLEEGAEEFFLKPVRLSD 142 (241)
Q Consensus 111 Iils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~ 142 (241)
++.|+.-+++.+.+|+..|||++|+--....+
T Consensus 35 v~CsGrvn~~fvl~Al~~GaDGV~v~GC~~ge 66 (132)
T COG1908 35 VMCSGRVNPEFVLKALRKGADGVLVAGCKIGE 66 (132)
T ss_pred eeccCccCHHHHHHHHHcCCCeEEEecccccc
Confidence 35688899999999999999999987665544
No 422
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=55.63 E-value=34 Score=28.05 Aligned_cols=66 Identities=24% Similarity=0.309 Sum_probs=49.3
Q ss_pred eEEEEeCCHHHHHHHHHHhhcCCC-EEE-EECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHHH
Q 026239 17 HVLAVDDSIIDRKLIERLLKTSSY-QVT-TVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYD 94 (241)
Q Consensus 17 ~ILiVdd~~~~~~~l~~~L~~~g~-~v~-~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~~ 94 (241)
+|.-||-++.....-++.|+..|| +|. ...||...+. ...+||.|++...-+... -.
T Consensus 96 ~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~--------------------~~aPyD~I~Vtaaa~~vP-~~ 154 (209)
T COG2518 96 RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWP--------------------EEAPYDRIIVTAAAPEVP-EA 154 (209)
T ss_pred eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCC--------------------CCCCcCEEEEeeccCCCC-HH
Confidence 899999999888888888999998 554 5667766543 345789999988776654 35
Q ss_pred HHHHHHhcC
Q 026239 95 LLKKIKESS 103 (241)
Q Consensus 95 ll~~ir~~~ 103 (241)
|++.|+..+
T Consensus 155 Ll~QL~~gG 163 (209)
T COG2518 155 LLDQLKPGG 163 (209)
T ss_pred HHHhcccCC
Confidence 778887643
No 423
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=55.53 E-value=1e+02 Score=24.46 Aligned_cols=55 Identities=22% Similarity=0.382 Sum_probs=35.4
Q ss_pred CHHHHHHHHHhcCCCCCCcEEE-EccCCChHHHHHHHHhcccccccCCCCHHHHHHhhH
Q 026239 91 TGYDLLKKIKESSSLRDIPVVI-MSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKP 148 (241)
Q Consensus 91 ~g~~ll~~ir~~~~~~~ipvIi-ls~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~ 148 (241)
-|++.++.|++.. ..|+.+ +...+....+..+.+.|+++++.-....++....++
T Consensus 43 ~~~~~v~~i~~~~---~~~v~v~lm~~~~~~~~~~~~~~gadgv~vh~~~~~~~~~~~~ 98 (210)
T TIGR01163 43 FGPPVLEALRKYT---DLPIDVHLMVENPDRYIEDFAEAGADIITVHPEASEHIHRLLQ 98 (210)
T ss_pred cCHHHHHHHHhcC---CCcEEEEeeeCCHHHHHHHHHHcCCCEEEEccCCchhHHHHHH
Confidence 5789999999642 456522 444455667778889999987765544444444433
No 424
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=55.43 E-value=96 Score=26.63 Aligned_cols=64 Identities=9% Similarity=0.118 Sum_probs=40.7
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHHHH
Q 026239 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMKT 153 (241)
Q Consensus 79 dlIilD~~mp~~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~~~ 153 (241)
|++++-.. ..-|+.+++.+.. .+|||........ +.+..|..+++..|-+.++|.+.+..++..
T Consensus 263 d~~v~ps~--e~~g~~~~Eama~-----G~Pvi~~~~~~~~----e~i~~~~~G~~~~~~~~~~la~~i~~l~~~ 326 (351)
T cd03804 263 RAFLFPAE--EDFGIVPVEAMAS-----GTPVIAYGKGGAL----ETVIDGVTGILFEEQTVESLAAAVERFEKN 326 (351)
T ss_pred CEEEECCc--CCCCchHHHHHHc-----CCCEEEeCCCCCc----ceeeCCCCEEEeCCCCHHHHHHHHHHHHhC
Confidence 46665443 3345556666553 6789875433322 334567778999999999988777666543
No 425
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=55.34 E-value=41 Score=29.47 Aligned_cols=44 Identities=20% Similarity=0.223 Sum_probs=33.1
Q ss_pred CcceEEEEeCCHHHHHHHHHHhhcCCCEEEEE------CCHHHHHHHhcc
Q 026239 14 SQFHVLAVDDSIIDRKLIERLLKTSSYQVTTV------DSGSKALEFLGL 57 (241)
Q Consensus 14 ~~~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~------~~~~~al~~l~~ 57 (241)
..-.||||.....+..-.+..|++.|+.|... ++.+.+..+++.
T Consensus 75 npd~VLIIGGp~AVs~~yE~~Lks~GitV~RigG~nR~ETa~~v~~~~~~ 124 (337)
T COG2247 75 NPDLVLIIGGPIAVSPNYENALKSLGITVKRIGGANRYETAEKVAKFFRE 124 (337)
T ss_pred CCceEEEECCCCcCChhHHHHHHhCCcEEEEecCcchHHHHHHHHHHHHh
Confidence 34689999999999999999999999987743 234455555543
No 426
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=55.22 E-value=1.6e+02 Score=26.57 Aligned_cols=103 Identities=11% Similarity=0.058 Sum_probs=55.0
Q ss_pred cceEEEEeCCHHH---HHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCC-C
Q 026239 15 QFHVLAVDDSIID---RKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPG-M 90 (241)
Q Consensus 15 ~~~ILiVdd~~~~---~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~-~ 90 (241)
..+|.+|+-|... ...+..+....|..+..+.+..+....+... ..+|+||+|.---. .
T Consensus 206 g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~-----------------~~~DlVLIDTaGr~~~ 268 (388)
T PRK12723 206 SLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS-----------------KDFDLVLVDTIGKSPK 268 (388)
T ss_pred CCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh-----------------CCCCEEEEcCCCCCcc
Confidence 4678888876532 2224444444567677777766655555321 24789999974211 2
Q ss_pred CHH---HHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHH----hccccccc
Q 026239 91 TGY---DLLKKIKESSSLRDIPVVIMSSENVPSRISRCLE----EGAEEFFL 135 (241)
Q Consensus 91 ~g~---~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~----~Ga~~~l~ 135 (241)
+.. ++.+.+....+ +.-.++++++......+.+.++ .|.+++|.
T Consensus 269 ~~~~l~el~~~l~~~~~-~~e~~LVlsat~~~~~~~~~~~~~~~~~~~~~I~ 319 (388)
T PRK12723 269 DFMKLAEMKELLNACGR-DAEFHLAVSSTTKTSDVKEIFHQFSPFSYKTVIF 319 (388)
T ss_pred CHHHHHHHHHHHHhcCC-CCeEEEEEcCCCCHHHHHHHHHHhcCCCCCEEEE
Confidence 322 22233333221 1235677877666555554443 34566544
No 427
>PRK12703 tRNA 2'-O-methylase; Reviewed
Probab=55.18 E-value=1.4e+02 Score=26.50 Aligned_cols=81 Identities=19% Similarity=0.234 Sum_probs=56.4
Q ss_pred ceEEEEeCCHHHHHHHHHHhhcCC--CEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHH
Q 026239 16 FHVLAVDDSIIDRKLIERLLKTSS--YQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGY 93 (241)
Q Consensus 16 ~~ILiVdd~~~~~~~l~~~L~~~g--~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~ 93 (241)
-+|++-++|+...+.++....++| |.|....+....+...+ =.++-+.|=|.+--
T Consensus 31 ~~~~~~~~d~~~~~~~~~v~~~~gg~f~~~~~~~~~~~~~~~~-----------------------g~vvhltmyg~~~~ 87 (339)
T PRK12703 31 SSILVDERDETLENTIKKVVDNFGGSFEIKTGIEWKSEFKKFH-----------------------GIRVHLTMYGRPIE 87 (339)
T ss_pred CeeEecCCcHhHHHHHHHHHHhcCCCeEEEeccCHHHHHHhcC-----------------------CEEEEEecCCCchH
Confidence 458888999999999999999987 66666666665554331 36777889999989
Q ss_pred HHHHHHHhcCCCCCCcEEEEccCCChHHH
Q 026239 94 DLLKKIKESSSLRDIPVVIMSSENVPSRI 122 (241)
Q Consensus 94 ~ll~~ir~~~~~~~ipvIils~~~~~~~~ 122 (241)
+++..|+.... + -+|++.++..+..+
T Consensus 88 ~~~~~i~~~~~--~-~~~vvg~~kvp~~~ 113 (339)
T PRK12703 88 DVIDEIRESGK--D-VMVLVGSEKVPIEA 113 (339)
T ss_pred HHHHHHhccCC--C-EEEEECCCcCCHHH
Confidence 99999996321 2 23444444444433
No 428
>PRK03612 spermidine synthase; Provisional
Probab=55.16 E-value=1e+02 Score=28.87 Aligned_cols=69 Identities=20% Similarity=0.167 Sum_probs=37.6
Q ss_pred ceEEEEeCCHHHHHHHHH--HhhcC------CCEEE-EECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCC
Q 026239 16 FHVLAVDDSIIDRKLIER--LLKTS------SYQVT-TVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYC 86 (241)
Q Consensus 16 ~~ILiVdd~~~~~~~l~~--~L~~~------g~~v~-~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~ 86 (241)
-+|.+||=|+...+..++ .+... +-.+. ...|+.+.+... ...||+||+|..
T Consensus 322 ~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~-------------------~~~fDvIi~D~~ 382 (521)
T PRK03612 322 EQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL-------------------AEKFDVIIVDLP 382 (521)
T ss_pred CeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC-------------------CCCCCEEEEeCC
Confidence 477777777777776665 22211 11233 334444433321 235899999976
Q ss_pred CCCCCH------HHHHHHHHhcC
Q 026239 87 MPGMTG------YDLLKKIKESS 103 (241)
Q Consensus 87 mp~~~g------~~ll~~ir~~~ 103 (241)
.|...+ -++++.+++.-
T Consensus 383 ~~~~~~~~~L~t~ef~~~~~~~L 405 (521)
T PRK03612 383 DPSNPALGKLYSVEFYRLLKRRL 405 (521)
T ss_pred CCCCcchhccchHHHHHHHHHhc
Confidence 664322 25666666543
No 429
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=55.13 E-value=64 Score=28.60 Aligned_cols=40 Identities=18% Similarity=0.344 Sum_probs=30.9
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhccccccc
Q 026239 92 GYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFL 135 (241)
Q Consensus 92 g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~ 135 (241)
.++.+++|+... ++|||+=.- ...+.+..+.+.|++.++.
T Consensus 201 ~~~~i~~l~~~~---~~PvivKgv-~~~~dA~~a~~~G~d~I~v 240 (344)
T cd02922 201 TWDDIKWLRKHT---KLPIVLKGV-QTVEDAVLAAEYGVDGIVL 240 (344)
T ss_pred CHHHHHHHHHhc---CCcEEEEcC-CCHHHHHHHHHcCCCEEEE
Confidence 367788888754 689987644 5678889999999988764
No 430
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=55.03 E-value=1.4e+02 Score=25.85 Aligned_cols=39 Identities=21% Similarity=0.417 Sum_probs=31.9
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHH-Hhccccc
Q 026239 92 GYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCL-EEGAEEF 133 (241)
Q Consensus 92 g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l-~~Ga~~~ 133 (241)
-++.++.|++.. ++|||...+-.+.+.+.+++ ..||+.+
T Consensus 180 ~~~~i~~i~~~~---~ipvi~nGgI~~~~da~~~l~~~gad~V 219 (319)
T TIGR00737 180 NWDIIARVKQAV---RIPVIGNGDIFSPEDAKAMLETTGCDGV 219 (319)
T ss_pred hHHHHHHHHHcC---CCcEEEeCCCCCHHHHHHHHHhhCCCEE
Confidence 478888888754 58999998888999999999 5678765
No 431
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=54.83 E-value=70 Score=27.74 Aligned_cols=79 Identities=13% Similarity=0.184 Sum_probs=48.9
Q ss_pred CcceEEEEeCCHHHH-HHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCC--CC-
Q 026239 14 SQFHVLAVDDSIIDR-KLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCM--PG- 89 (241)
Q Consensus 14 ~~~~ILiVdd~~~~~-~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~m--p~- 89 (241)
..++|.++|..|... ..+...|...|..|+...+..-+.- +. .+|.||+..+. .+
T Consensus 140 ~~f~V~v~EsrP~~~G~~~a~~L~~~gI~vtlI~Dsa~~~~-m~--------------------~vd~VivGad~v~~nG 198 (301)
T TIGR00511 140 KDIEVIATETRPRKQGHITAKELRDYGIPVTLIVDSAVRYF-MK--------------------EVDHVVVGADAITANG 198 (301)
T ss_pred CcEEEEEecCCCcchHHHHHHHHHHCCCCEEEEehhHHHHH-HH--------------------hCCEEEECccEEecCC
Confidence 468999888887543 4566677788988887665544332 21 25678875443 32
Q ss_pred ----CCHHHHHHHHHhcCCCCCCcEEEEccC
Q 026239 90 ----MTGYDLLKKIKESSSLRDIPVVIMSSE 116 (241)
Q Consensus 90 ----~~g~~ll~~ir~~~~~~~ipvIils~~ 116 (241)
.-|.-.+..+-... ++|+++++..
T Consensus 199 ~v~nkiGT~~lA~~Ak~~---~vPv~V~a~~ 226 (301)
T TIGR00511 199 ALINKIGTSQLALAAREA---RVPFMVAAET 226 (301)
T ss_pred CEEEHHhHHHHHHHHHHh---CCCEEEEccc
Confidence 23555555554432 7899998763
No 432
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=54.73 E-value=1.4e+02 Score=25.65 Aligned_cols=58 Identities=16% Similarity=0.226 Sum_probs=34.7
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHH-hcccccccCC-CCHH
Q 026239 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLE-EGAEEFFLKP-VRLS 141 (241)
Q Consensus 78 ~dlIilD~~mp~~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~-~Ga~~~l~KP-~~~~ 141 (241)
+|.|++|+..|.. .++.++..... .+|+|+-|...+.+......+ .+ ..+|.-| |+..
T Consensus 69 ~d~VvIDFT~P~~-~~~n~~~~~~~----gv~~ViGTTG~~~~~~~~l~~~~~-i~~l~apNfSiG 128 (275)
T TIGR02130 69 PELICIDYTHPSA-VNDNAAFYGKH----GIPFVMGTTGGDREALAKLVADAK-HPAVIAPNMAKQ 128 (275)
T ss_pred CCEEEEECCChHH-HHHHHHHHHHC----CCCEEEcCCCCCHHHHHHHHHhcC-CCEEEECcccHH
Confidence 5689999999873 34555555543 567777776666555544433 33 3444444 5544
No 433
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=54.72 E-value=1e+02 Score=26.87 Aligned_cols=78 Identities=14% Similarity=0.201 Sum_probs=48.8
Q ss_pred CcceEEEEeCCHHHH-HHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCC-
Q 026239 14 SQFHVLAVDDSIIDR-KLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMT- 91 (241)
Q Consensus 14 ~~~~ILiVdd~~~~~-~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~- 91 (241)
..++|+|.|..|..- ..+.+.|+..|..++.+.|..-..-. . .+|.||+..+.-..|
T Consensus 144 k~~~V~VtESRP~~eG~~~ak~L~~~gI~~~~I~Dsa~~~~~-~--------------------~vd~VivGad~I~~nG 202 (301)
T COG1184 144 KRFKVIVTESRPRGEGRIMAKELRQSGIPVTVIVDSAVGAFM-S--------------------RVDKVLVGADAILANG 202 (301)
T ss_pred CceEEEEEcCCCcchHHHHHHHHHHcCCceEEEechHHHHHH-H--------------------hCCEEEECccceecCC
Confidence 357999999887543 55777888899888866554433222 1 256888776665444
Q ss_pred ------HHHHHHHHHhcCCCCCCcEEEEcc
Q 026239 92 ------GYDLLKKIKESSSLRDIPVVIMSS 115 (241)
Q Consensus 92 ------g~~ll~~ir~~~~~~~ipvIils~ 115 (241)
|.-.+....... .+|+++++.
T Consensus 203 ~lvnkiGT~~lA~~A~e~---~~Pf~v~ae 229 (301)
T COG1184 203 ALVNKIGTSPLALAAREL---RVPFYVVAE 229 (301)
T ss_pred cEEeccchHHHHHHHHHh---CCCEEEEee
Confidence 334444443322 678888865
No 434
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=54.71 E-value=97 Score=27.61 Aligned_cols=64 Identities=20% Similarity=0.209 Sum_probs=40.1
Q ss_pred ceEEEEeCCHH-----HHHHHHHHhhcCCCEEEEEC---------CHHHHHHHhcccCCCCCCCCCCCCCCcccccccEE
Q 026239 16 FHVLAVDDSII-----DRKLIERLLKTSSYQVTTVD---------SGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLV 81 (241)
Q Consensus 16 ~~ILiVdd~~~-----~~~~l~~~L~~~g~~v~~~~---------~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlI 81 (241)
-|+|||-|... ....+...|+..|..+..++ +..++.+.++.. .+|+|
T Consensus 26 ~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~------------------~~D~I 87 (380)
T cd08185 26 KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALAREE------------------GCDFV 87 (380)
T ss_pred CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHHc------------------CCCEE
Confidence 58888887654 33456777777777665543 234555555433 45577
Q ss_pred EEeCCCCCCCHHHHHHHHH
Q 026239 82 ITDYCMPGMTGYDLLKKIK 100 (241)
Q Consensus 82 ilD~~mp~~~g~~ll~~ir 100 (241)
|- +.|.+-+|..|.+.
T Consensus 88 ia---vGGGS~iD~aK~ia 103 (380)
T cd08185 88 VG---LGGGSSMDTAKAIA 103 (380)
T ss_pred EE---eCCccHHHHHHHHH
Confidence 73 45777778777664
No 435
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=54.69 E-value=92 Score=26.80 Aligned_cols=103 Identities=20% Similarity=0.159 Sum_probs=60.0
Q ss_pred cceEEEEeCCHHHHHHHHHHhhcCCCEEE-----EECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCC--
Q 026239 15 QFHVLAVDDSIIDRKLIERLLKTSSYQVT-----TVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCM-- 87 (241)
Q Consensus 15 ~~~ILiVdd~~~~~~~l~~~L~~~g~~v~-----~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~m-- 87 (241)
.-+||=+|.|+......-.+-+..|..+. .-.-.+...++|....||- |||+..+-
T Consensus 105 PGkVLHlDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~~PDI-----------------lViTGHD~~~ 167 (287)
T PF05582_consen 105 PGKVLHLDGDEEYLNKCLKVYKQLGIPAVGIHVPEKEQPEKIYRLLEEYRPDI-----------------LVITGHDGYL 167 (287)
T ss_pred CCeEEEecCCHHHHHHHHHHHHHcCCceEEEEechHHhhHHHHHHHHHcCCCE-----------------EEEeCchhhh
Confidence 35899999999999888888787776554 2234556667777666661 44443321
Q ss_pred C------CCCH-------HHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCC
Q 026239 88 P------GMTG-------YDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP 137 (241)
Q Consensus 88 p------~~~g-------~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP 137 (241)
- +.+. .+.++..|.-.+..+--|| +.+.. -+.-...+++||+ |-+-|
T Consensus 168 K~~~d~~dl~~YrnSkyFVeaV~~aR~~ep~~D~LVI-fAGAC-QS~fEall~AGAN-FASSP 227 (287)
T PF05582_consen 168 KNKKDYSDLNNYRNSKYFVEAVKEARKYEPNLDDLVI-FAGAC-QSHFEALLEAGAN-FASSP 227 (287)
T ss_pred cCCCChhhhhhhhccHHHHHHHHHHHhcCCCcccEEE-Ecchh-HHHHHHHHHcCcc-ccCCc
Confidence 1 1121 2345555554443344444 44433 3445567899985 55544
No 436
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=54.59 E-value=1.2e+02 Score=25.71 Aligned_cols=75 Identities=19% Similarity=0.232 Sum_probs=42.9
Q ss_pred CcceEEEE-eCCHHHHHHHHHHhhcCCCEEEEECC-------HHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeC
Q 026239 14 SQFHVLAV-DDSIIDRKLIERLLKTSSYQVTTVDS-------GSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDY 85 (241)
Q Consensus 14 ~~~~ILiV-dd~~~~~~~l~~~L~~~g~~v~~~~~-------~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~ 85 (241)
....|.++ .++... +...++..||.|....+ ..+.++.+... .+|+||+|.
T Consensus 30 ~g~~v~f~~~~~~~~---~~~~i~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~------------------~~d~vV~D~ 88 (279)
T TIGR03590 30 QGAEVAFACKPLPGD---LIDLLLSAGFPVYELPDESSRYDDALELINLLEEE------------------KFDILIVDH 88 (279)
T ss_pred CCCEEEEEeCCCCHH---HHHHHHHcCCeEEEecCCCchhhhHHHHHHHHHhc------------------CCCEEEEcC
Confidence 34565444 444332 23566778998876643 33455666443 355999997
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCCcEEEEccC
Q 026239 86 CMPGMTGYDLLKKIKESSSLRDIPVVIMSSE 116 (241)
Q Consensus 86 ~mp~~~g~~ll~~ir~~~~~~~ipvIils~~ 116 (241)
. ..+. +..+.++.. ..+++++...
T Consensus 89 y--~~~~-~~~~~~k~~----~~~l~~iDD~ 112 (279)
T TIGR03590 89 Y--GLDA-DWEKLIKEF----GRKILVIDDL 112 (279)
T ss_pred C--CCCH-HHHHHHHHh----CCeEEEEecC
Confidence 5 3332 456667753 3466777654
No 437
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=54.49 E-value=1.1e+02 Score=24.63 Aligned_cols=100 Identities=15% Similarity=0.206 Sum_probs=52.1
Q ss_pred HHHHHHHhhcCCC---EEEEECCHHHHHHHhcccCCCCCCCCCC--CCC----CcccccccEEEEeCCCCCCCHHHHHHH
Q 026239 28 RKLIERLLKTSSY---QVTTVDSGSKALEFLGLHEDDGQSSHSV--YPN----MHQEVGVNLVITDYCMPGMTGYDLLKK 98 (241)
Q Consensus 28 ~~~l~~~L~~~g~---~v~~~~~~~~al~~l~~~~~d~~~~~~~--~~~----~~~~~~~dlIilD~~mp~~~g~~ll~~ 98 (241)
...+..+++..+. .|+..+-..+.+..++...|+...+... .+. ......++.+-+++.. .+ -++++.
T Consensus 118 ~~~v~~~l~~~~~~~~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~v~~ 194 (229)
T cd08562 118 ARVVAAALRELWPHASKLLLSSFSLEALRAARRAAPELPLGLLFDTLPADWLELLAALGAVSIHLNYRG--LT-EEQVKA 194 (229)
T ss_pred HHHHHHHHHHhcCCcCCEEEECCCHHHHHHHHHhCCCCcEEEEecCCCcCHHHHHHHcCCeEEecChhh--CC-HHHHHH
Confidence 3445566665553 3554454556677776655542110000 000 0011112222222222 22 367777
Q ss_pred HHhcCCCCCCcEEEEccCCChHHHHHHHHhccccccc
Q 026239 99 IKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFL 135 (241)
Q Consensus 99 ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~ 135 (241)
++.. .++|.+.|-. +.+.+.+++..|++++++
T Consensus 195 ~~~~----g~~v~~wTvn-~~~~~~~~~~~gVdgiiT 226 (229)
T cd08562 195 LKDA----GYKLLVYTVN-DPARAAELLEWGVDAIFT 226 (229)
T ss_pred HHHC----CCEEEEEeCC-CHHHHHHHHHCCCCEEEc
Confidence 7764 5678877764 467788889999998875
No 438
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=54.40 E-value=1.2e+02 Score=26.34 Aligned_cols=103 Identities=15% Similarity=0.255 Sum_probs=53.5
Q ss_pred HHHHHHHhhcCCCEEEEECCHHHHHHHhcc---cCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHHHHHHHHHhcCC
Q 026239 28 RKLIERLLKTSSYQVTTVDSGSKALEFLGL---HEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYDLLKKIKESSS 104 (241)
Q Consensus 28 ~~~l~~~L~~~g~~v~~~~~~~~al~~l~~---~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~~ll~~ir~~~~ 104 (241)
...+...|...|+.+....+..+.+..-.. ...++.. ..+.......+|+||+ -|.|| .+|+..+....
T Consensus 19 ~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~Dlvi~----iGGDG-TlL~aar~~~~ 90 (305)
T PRK02649 19 AEELQDKLEAAGWEVVRASSSGGILGYANPDQPVCHTGID---QLVPPGFDSSMKFAIV----LGGDG-TVLSAARQLAP 90 (305)
T ss_pred HHHHHHHHHHCCCEEEEecchhhhcCcccccccccccccc---ccChhhcccCcCEEEE----EeCcH-HHHHHHHHhcC
Confidence 455666677889988776544333321000 0000000 0000001124567776 36677 56676665432
Q ss_pred CCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHHHH
Q 026239 105 LRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMKT 153 (241)
Q Consensus 105 ~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~~~ 153 (241)
.++||+-+. .|-.+||.- ++++++...+..++++
T Consensus 91 -~~iPilGIN-------------~G~lGFLt~-~~~~~~~~~l~~l~~g 124 (305)
T PRK02649 91 -CGIPLLTIN-------------TGHLGFLTE-AYLNQLDEAIDQVLAG 124 (305)
T ss_pred -CCCcEEEEe-------------CCCCccccc-CCHHHHHHHHHHHHcC
Confidence 378988663 255677764 5677777766666544
No 439
>TIGR00642 mmCoA_mut_beta methylmalonyl-CoA mutase, heterodimeric type, beta chain. The adenosylcobalamin-binding, catalytic chain of methylmalonyl-CoA mutase may form homodimers, as in mitochondrion and E. coli, or heterodimers with a shorter, homologous chain that does not bind adenosylcobalamin. This model describes this non-catalytic beta chain, as found in the enzyme from Propionibacterium freudenreichii, for which the 3-dimensional structure has been solved.
Probab=54.39 E-value=1.1e+02 Score=29.59 Aligned_cols=106 Identities=7% Similarity=0.051 Sum_probs=64.9
Q ss_pred CcceEEEEeCCH-----HHHHHHHHHhhcCCCEEEE---ECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEE-e
Q 026239 14 SQFHVLAVDDSI-----IDRKLIERLLKTSSYQVTT---VDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVIT-D 84 (241)
Q Consensus 14 ~~~~ILiVdd~~-----~~~~~l~~~L~~~g~~v~~---~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIil-D 84 (241)
...+|.++-=-+ .-......+|...||.+.. +.+.+++.+.......+ ++++ .
T Consensus 493 ~rP~vfL~~lG~~a~~~aRa~Fa~nff~~gG~~~~~~~~~~~~~~~~~a~~~sga~------------------i~viCs 554 (619)
T TIGR00642 493 ERPKVFLLCLGTLADFGGREGFSSNVWHIAGIDTIQVEGGTTAEIVVEAFKKAGAQ------------------VAVLCS 554 (619)
T ss_pred CCCeEEEeCCCChHhhccHHHHHHhHHhcCceeeccCCCCCCHHHHHHHHHhcCCC------------------EEEEeC
Confidence 345666664332 2334566677777888763 45677777776544433 4443 3
Q ss_pred CCCC-CCCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHH
Q 026239 85 YCMP-GMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDL 143 (241)
Q Consensus 85 ~~mp-~~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L 143 (241)
.+-- ...+-++++.||.... ..|+|.+.... ......+|+|+||.--.+.-++
T Consensus 555 sD~~Y~~~a~~~~~al~~ag~----~~v~lAG~p~~--~~~~~~aGvd~fi~~g~d~~~~ 608 (619)
T TIGR00642 555 SDKVYAQQGLEVAKALKAAGA----KALYLAGAFKE--FGDDAAEAIDGRLFMKMNVVDT 608 (619)
T ss_pred CCcchHHHHHHHHHHHHhCCC----CEEEEeCCCcc--hhhHHhcCCcceeEcCCcHHHH
Confidence 2211 1246678899987653 36777776643 3347789999999887765443
No 440
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=54.39 E-value=1.2e+02 Score=26.87 Aligned_cols=39 Identities=28% Similarity=0.408 Sum_probs=30.7
Q ss_pred HHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccc
Q 026239 93 YDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFF 134 (241)
Q Consensus 93 ~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l 134 (241)
.++.+.|++.. ++||++...-.+...+.++++.|..|++
T Consensus 265 ~~~~~~ik~~v---~iPVi~~G~i~~~~~a~~~i~~g~~D~V 303 (353)
T cd02930 265 AWATAKLKRAV---DIPVIASNRINTPEVAERLLADGDADMV 303 (353)
T ss_pred HHHHHHHHHhC---CCCEEEcCCCCCHHHHHHHHHCCCCChh
Confidence 56678888754 7899888777889999999999866653
No 441
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=54.20 E-value=1.2e+02 Score=24.69 Aligned_cols=67 Identities=22% Similarity=0.349 Sum_probs=46.0
Q ss_pred EECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCC-CCCHHHHHHHHHhcCCCCCCcEEEEccCCChHHH
Q 026239 44 TVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMP-GMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRI 122 (241)
Q Consensus 44 ~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp-~~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~ 122 (241)
.+.+..++.+.... ..|.|-+ .| +.-|.+.++.++...+ +++|++.+.+- +.+.+
T Consensus 110 G~~t~~E~~~A~~~-------------------Gad~vk~---Fpa~~~G~~~l~~l~~~~~-~~ipvvaiGGI-~~~n~ 165 (206)
T PRK09140 110 GVATPTEAFAALRA-------------------GAQALKL---FPASQLGPAGIKALRAVLP-PDVPVFAVGGV-TPENL 165 (206)
T ss_pred ccCCHHHHHHHHHc-------------------CCCEEEE---CCCCCCCHHHHHHHHhhcC-CCCeEEEECCC-CHHHH
Confidence 56677777666532 2446654 34 3357899999987542 26898877654 67888
Q ss_pred HHHHHhcccccc
Q 026239 123 SRCLEEGAEEFF 134 (241)
Q Consensus 123 ~~~l~~Ga~~~l 134 (241)
.+++++|++.+-
T Consensus 166 ~~~~~aGa~~va 177 (206)
T PRK09140 166 APYLAAGAAGFG 177 (206)
T ss_pred HHHHHCCCeEEE
Confidence 999999998764
No 442
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=54.19 E-value=72 Score=28.00 Aligned_cols=48 Identities=15% Similarity=0.303 Sum_probs=34.7
Q ss_pred HHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhccccc------ccCCCCHHHH
Q 026239 93 YDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEF------FLKPVRLSDL 143 (241)
Q Consensus 93 ~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~------l~KP~~~~~L 143 (241)
++.++.+++..+ ++|||...+-.+.+.+.++++ |++++ +..|+-..++
T Consensus 193 ~~~i~~v~~~~~--~iPVI~nGgI~s~eda~~~l~-~aDgVmIGRa~l~nP~~~~~~ 246 (333)
T PRK11815 193 YDRVYRLKRDFP--HLTIEINGGIKTLEEAKEHLQ-HVDGVMIGRAAYHNPYLLAEV 246 (333)
T ss_pred HHHHHHHHHhCC--CCeEEEECCcCCHHHHHHHHh-cCCEEEEcHHHHhCCHHHHHH
Confidence 778888887532 799998888888888888886 67765 4456544443
No 443
>PLN02316 synthase/transferase
Probab=54.12 E-value=1.5e+02 Score=30.41 Aligned_cols=69 Identities=6% Similarity=0.054 Sum_probs=42.2
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHH---------HhcccccccCCCCHHHHHHhhH
Q 026239 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCL---------EEGAEEFFLKPVRLSDLNKLKP 148 (241)
Q Consensus 78 ~dlIilD~~mp~~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l---------~~Ga~~~l~KP~~~~~L~~~~~ 148 (241)
.|++++- .+...-|+..+..++. .+|+|+-......+.+...- ..|..+|+..|.+...|...+.
T Consensus 920 ADiflmP-S~~EP~GLvqLEAMa~-----GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tGflf~~~d~~aLa~AL~ 993 (1036)
T PLN02316 920 ADFILVP-SIFEPCGLTQLTAMRY-----GSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNGFSFDGADAAGVDYALN 993 (1036)
T ss_pred CcEEEeC-CcccCccHHHHHHHHc-----CCCeEEEcCCCcHhhccccccccccccccccCCceEEeCCCCHHHHHHHHH
Confidence 4576664 3345568888887774 44555543334444443220 1147899999999999877666
Q ss_pred HHHH
Q 026239 149 HLMK 152 (241)
Q Consensus 149 ~l~~ 152 (241)
+++.
T Consensus 994 raL~ 997 (1036)
T PLN02316 994 RAIS 997 (1036)
T ss_pred HHHh
Confidence 6554
No 444
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=54.10 E-value=43 Score=26.41 Aligned_cols=56 Identities=16% Similarity=0.214 Sum_probs=40.1
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHH
Q 026239 92 GYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHL 150 (241)
Q Consensus 92 g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l 150 (241)
-.+.++.++...+ ..+.|.+=. .+.+.+.+++++|++...+--++++++.+++..+
T Consensus 66 i~~av~~~~~~~~--~~~~I~VEv-~~~ee~~ea~~~g~d~I~lD~~~~~~~~~~v~~l 121 (169)
T PF01729_consen 66 IEEAVKAARQAAP--EKKKIEVEV-ENLEEAEEALEAGADIIMLDNMSPEDLKEAVEEL 121 (169)
T ss_dssp HHHHHHHHHHHST--TTSEEEEEE-SSHHHHHHHHHTT-SEEEEES-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC--CCceEEEEc-CCHHHHHHHHHhCCCEEEecCcCHHHHHHHHHHH
Confidence 4678888888765 343233322 3467788999999999999999999998877765
No 445
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=54.04 E-value=1.6e+02 Score=26.23 Aligned_cols=32 Identities=25% Similarity=0.283 Sum_probs=25.3
Q ss_pred cceEEEEeCCHHHHHHHHHHhhcCCCEEEEEC
Q 026239 15 QFHVLAVDDSIIDRKLIERLLKTSSYQVTTVD 46 (241)
Q Consensus 15 ~~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~ 46 (241)
..+|.||..-..+...+...|...|+.|+.++
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d 129 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSGYQVRILE 129 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCCCeEEEeC
Confidence 46788888667778888888888888887665
No 446
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=54.03 E-value=48 Score=23.93 Aligned_cols=30 Identities=10% Similarity=0.058 Sum_probs=16.9
Q ss_pred CHHHHHHHHHHhhcCCCEEEEECCHHHHHH
Q 026239 24 SIIDRKLIERLLKTSSYQVTTVDSGSKALE 53 (241)
Q Consensus 24 ~~~~~~~l~~~L~~~g~~v~~~~~~~~al~ 53 (241)
+......+.+.|...||.+.....-.+.|.
T Consensus 10 ~K~~~~~~a~~l~~~G~~i~AT~gTa~~L~ 39 (112)
T cd00532 10 VKAMLVDLAPKLSSDGFPLFATGGTSRVLA 39 (112)
T ss_pred cHHHHHHHHHHHHHCCCEEEECcHHHHHHH
Confidence 334444555566678888865444444444
No 447
>PRK06801 hypothetical protein; Provisional
Probab=53.97 E-value=71 Score=27.54 Aligned_cols=40 Identities=18% Similarity=0.404 Sum_probs=31.2
Q ss_pred CHHHHHHHHHhcCCCCCCcEEEEccCC-ChHHHHHHHHhccccc
Q 026239 91 TGYDLLKKIKESSSLRDIPVVIMSSEN-VPSRISRCLEEGAEEF 133 (241)
Q Consensus 91 ~g~~ll~~ir~~~~~~~ipvIils~~~-~~~~~~~~l~~Ga~~~ 133 (241)
-+++.++.|++.. ++|+|+..++. ..+.+.++.+.|+..+
T Consensus 190 l~~e~l~~i~~~~---~~PLVlHGGSgi~~e~~~~~i~~Gi~KI 230 (286)
T PRK06801 190 LDFARLAAIHQQT---GLPLVLHGGSGISDADFRRAIELGIHKI 230 (286)
T ss_pred CCHHHHHHHHHhc---CCCEEEECCCCCCHHHHHHHHHcCCcEE
Confidence 4789999998754 68999887744 4567888999998765
No 448
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=53.93 E-value=53 Score=31.99 Aligned_cols=73 Identities=14% Similarity=0.330 Sum_probs=42.5
Q ss_pred cccEEEEe-CCCCCCCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHHH
Q 026239 77 GVNLVITD-YCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMK 152 (241)
Q Consensus 77 ~~dlIilD-~~mp~~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~~ 152 (241)
.+.++|+| .+|-...+...+.++-+..+ ..+.+|+.|.. ...+...+..-+.-|-.||++..++.+.+.++++
T Consensus 118 k~KV~IIDEVh~LS~~A~NALLKtLEEPP-~~v~FILaTtd--~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~ 191 (702)
T PRK14960 118 RFKVYLIDEVHMLSTHSFNALLKTLEEPP-EHVKFLFATTD--PQKLPITVISRCLQFTLRPLAVDEITKHLGAILE 191 (702)
T ss_pred CcEEEEEechHhcCHHHHHHHHHHHhcCC-CCcEEEEEECC--hHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHH
Confidence 46689988 34433344444444333332 35667766643 3333334445566788899999998776666553
No 449
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=53.83 E-value=62 Score=26.82 Aligned_cols=63 Identities=13% Similarity=0.149 Sum_probs=46.9
Q ss_pred ccEEEEeCCC--CCCCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHH
Q 026239 78 VNLVITDYCM--PGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSD 142 (241)
Q Consensus 78 ~dlIilD~~m--p~~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~ 142 (241)
+.+|.+++.- ++.--.++++.+++... ++|+++=.+-.+.+.+..++++||+.++.-..-.++
T Consensus 150 ~~~vYlE~gs~~g~~v~~e~i~~v~~~~~--~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~~d 214 (223)
T TIGR01768 150 MPIIYLEAGSGAPEPVPPELVAEVKKVLD--KARLFVGGGIRSVEKAREMAEAGADTIVTGNVIEED 214 (223)
T ss_pred CcEEEEEecCCCCCCcCHHHHHHHHHHcC--CCCEEEecCCCCHHHHHHHHHcCCCEEEECcHHhhC
Confidence 4589998752 22234788999987542 689988777778889999999999999887754443
No 450
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=53.79 E-value=25 Score=33.13 Aligned_cols=52 Identities=21% Similarity=0.395 Sum_probs=40.6
Q ss_pred EEEEeCCCCCC-CH--HHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHH-hcccccc
Q 026239 80 LVITDYCMPGM-TG--YDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLE-EGAEEFF 134 (241)
Q Consensus 80 lIilD~~mp~~-~g--~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~-~Ga~~~l 134 (241)
++++|++.-|+ .| +++++.+.... ++|||+-.+....+.+.++++ .||++.+
T Consensus 455 il~t~id~DGt~~G~d~~l~~~v~~~~---~ipviasGG~g~~~d~~~~~~~~~~~a~~ 510 (538)
T PLN02617 455 ILLNCIDCDGQGKGFDIELVKLVSDAV---TIPVIASSGAGTPEHFSDVFSKTNASAAL 510 (538)
T ss_pred EEEeeccccccccCcCHHHHHHHHhhC---CCCEEEECCCCCHHHHHHHHhcCCccEEE
Confidence 89999987763 45 45788888753 799999999999999999997 4555543
No 451
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=53.42 E-value=1.2e+02 Score=24.66 Aligned_cols=54 Identities=19% Similarity=0.240 Sum_probs=37.7
Q ss_pred cccEEEEeCCCCC--------CCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhccccc
Q 026239 77 GVNLVITDYCMPG--------MTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEF 133 (241)
Q Consensus 77 ~~dlIilD~~mp~--------~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~ 133 (241)
.+|.|++.-..|. .-|++.++.+.+... ++||+.+.+- ..+.+..++..|++++
T Consensus 122 gaDYi~lgpvf~T~tK~~~~~~~G~~~l~~~~~~~~--~~PV~AiGGI-~~~ni~~l~~~Ga~Gi 183 (211)
T PRK03512 122 RPSYIALGHVFPTQTKQMPSAPQGLAQLARHVERLA--DYPTVAIGGI-SLERAPAVLATGVGSI 183 (211)
T ss_pred CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcC--CCCEEEECCC-CHHHHHHHHHcCCCEE
Confidence 4567777654432 236777777765432 6899999875 4677888999998876
No 452
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=53.40 E-value=1.3e+02 Score=25.84 Aligned_cols=47 Identities=19% Similarity=0.137 Sum_probs=35.3
Q ss_pred cceEEEEeCCHHHHHHHHHHhhcCCCEEE-----EECCHHHHHHHhcccCCC
Q 026239 15 QFHVLAVDDSIIDRKLIERLLKTSSYQVT-----TVDSGSKALEFLGLHEDD 61 (241)
Q Consensus 15 ~~~ILiVdd~~~~~~~l~~~L~~~g~~v~-----~~~~~~~al~~l~~~~~d 61 (241)
.-+||=+|.|+......-.+-+..|..+. .-.-.+....++....||
T Consensus 104 PGrVLHiDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~~PD 155 (283)
T TIGR02855 104 PGRVLHIDGDPEYLRKCLKLYKKIGVPVVGIHCKEKEMPEKVLDLIEEVRPD 155 (283)
T ss_pred CCcEEeecCCHHHHHHHHHHHHHhCCceEEEEecchhchHHHHHHHHHhCCC
Confidence 46899999999999888887777775443 334566777888777777
No 453
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=53.27 E-value=1.5e+02 Score=25.61 Aligned_cols=66 Identities=17% Similarity=0.333 Sum_probs=42.5
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHHHH
Q 026239 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMKT 153 (241)
Q Consensus 79 dlIilD~~mp~~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~~~ 153 (241)
|++|+= ...+.-|+.+++.+.. .+|||........ .+.+..|..+|+..|-+.++|...+..++..
T Consensus 280 d~~v~~-S~~Eg~~~~~lEAma~-----G~PvI~~~~~~g~---~~~v~~~~~G~lv~~~d~~~la~~i~~ll~~ 345 (372)
T cd04949 280 QLSLLT-SQSEGFGLSLMEALSH-----GLPVISYDVNYGP---SEIIEDGENGYLVPKGDIEALAEAIIELLND 345 (372)
T ss_pred hEEEec-ccccccChHHHHHHhC-----CCCEEEecCCCCc---HHHcccCCCceEeCCCcHHHHHHHHHHHHcC
Confidence 454443 2234456677777653 6788875432122 2345678899999999999998777776643
No 454
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=53.20 E-value=67 Score=26.66 Aligned_cols=53 Identities=9% Similarity=0.086 Sum_probs=38.3
Q ss_pred cEEEEeCCCCCC-CH--HHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhccccccc
Q 026239 79 NLVITDYCMPGM-TG--YDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFL 135 (241)
Q Consensus 79 dlIilD~~mp~~-~g--~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~ 135 (241)
.+|++|+.--|+ .| +++++.++.. ..|+|+-.+-.+.+++.++.+.|+++.+.
T Consensus 162 ~ii~tdI~~dGt~~G~d~el~~~~~~~----~~~viasGGv~s~~Dl~~l~~~G~~gviv 217 (232)
T PRK13586 162 GIIFTYISNEGTTKGIDYNVKDYARLI----RGLKEYAGGVSSDADLEYLKNVGFDYIIV 217 (232)
T ss_pred EEEEecccccccCcCcCHHHHHHHHhC----CCCEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 399999988764 44 5678888764 23566655566778888888999998765
No 455
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=53.13 E-value=30 Score=35.68 Aligned_cols=20 Identities=30% Similarity=0.209 Sum_probs=9.7
Q ss_pred HHHHHhhhhhHhhhhhhcCC
Q 026239 207 QQQQQQSNNNKRKALEEGLS 226 (241)
Q Consensus 207 qq~~q~~~~~~r~~~~~~~~ 226 (241)
.|||||-.+..|..+.+|-+
T Consensus 1872 lqqqqq~~qq~~~~~~q~~s 1891 (2131)
T KOG4369|consen 1872 LQQQQQRIQQFQQQYQQHQS 1891 (2131)
T ss_pred HHHHHhHHHHHHHHHhcccC
Confidence 33344444445666655544
No 456
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=53.03 E-value=31 Score=28.08 Aligned_cols=36 Identities=11% Similarity=0.089 Sum_probs=29.6
Q ss_pred cceEEEEeCCHHHHHHHHHHhhcCCC--EEEEECCHHH
Q 026239 15 QFHVLAVDDSIIDRKLIERLLKTSSY--QVTTVDSGSK 50 (241)
Q Consensus 15 ~~~ILiVdd~~~~~~~l~~~L~~~g~--~v~~~~~~~~ 50 (241)
+++|.|||--.-....+.+.|+..|+ .+....+.++
T Consensus 1 ~~~~~iid~g~gn~~s~~~al~~~g~~~~v~~~~~~~~ 38 (209)
T PRK13146 1 MMTVAIIDYGSGNLRSAAKALERAGAGADVVVTADPDA 38 (209)
T ss_pred CCeEEEEECCCChHHHHHHHHHHcCCCccEEEECCHHH
Confidence 36899999887777888999999998 7777777666
No 457
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=52.83 E-value=1.3e+02 Score=25.74 Aligned_cols=71 Identities=17% Similarity=0.200 Sum_probs=42.2
Q ss_pred HHHHHHHhhcCCCEEEE-------ECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHHHHHHHHH
Q 026239 28 RKLIERLLKTSSYQVTT-------VDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYDLLKKIK 100 (241)
Q Consensus 28 ~~~l~~~L~~~g~~v~~-------~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~~ll~~ir 100 (241)
...++..++..|..+.. ..+....+..+... .+|+||+-. ....+..+++.++
T Consensus 150 ~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~~~~i~~~------------------~pdaV~~~~--~~~~a~~~~~~~~ 209 (341)
T cd06341 150 AALLARSLAAAGVSVAGIVVITATAPDPTPQAQQAAAA------------------GADAIITVL--DAAVCASVLKAVR 209 (341)
T ss_pred HHHHHHHHHHcCCccccccccCCCCCCHHHHHHHHHhc------------------CCCEEEEec--ChHHHHHHHHHHH
Confidence 34456666666765432 13444555555433 355888743 3336788999999
Q ss_pred hcCCCCCCcEEEEccCCChH
Q 026239 101 ESSSLRDIPVVIMSSENVPS 120 (241)
Q Consensus 101 ~~~~~~~ipvIils~~~~~~ 120 (241)
+... +.|+++.....+..
T Consensus 210 ~~G~--~~~~~~~~~~~~~~ 227 (341)
T cd06341 210 AAGL--TPKVVLSGTCYDPA 227 (341)
T ss_pred HcCC--CCCEEEecCCCCHH
Confidence 8765 67777665544444
No 458
>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=52.69 E-value=93 Score=27.10 Aligned_cols=76 Identities=13% Similarity=0.039 Sum_probs=53.3
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCH
Q 026239 13 ESQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTG 92 (241)
Q Consensus 13 ~~~~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g 92 (241)
...++|+|...-..+..-|.+-|...|+.|..+++..........+. + ....++++..|.+.|-.-+
T Consensus 25 ~~~lrI~itGgaGFIgSHLvdkLm~egh~VIa~Dn~ftg~k~n~~~~-~------------~~~~fel~~hdv~~pl~~e 91 (350)
T KOG1429|consen 25 SQNLRILITGGAGFIGSHLVDKLMTEGHEVIALDNYFTGRKENLEHW-I------------GHPNFELIRHDVVEPLLKE 91 (350)
T ss_pred CCCcEEEEecCcchHHHHHHHHHHhcCCeEEEEecccccchhhcchh-c------------cCcceeEEEeechhHHHHH
Confidence 35699999999999998888888888998988775544332221111 1 3456889999999996666
Q ss_pred HHHHHHHHh
Q 026239 93 YDLLKKIKE 101 (241)
Q Consensus 93 ~~ll~~ir~ 101 (241)
.|.+=.|..
T Consensus 92 vD~IyhLAa 100 (350)
T KOG1429|consen 92 VDQIYHLAA 100 (350)
T ss_pred hhhhhhhcc
Confidence 666555543
No 459
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=52.62 E-value=56 Score=28.54 Aligned_cols=53 Identities=19% Similarity=0.446 Sum_probs=37.7
Q ss_pred cccccEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccc
Q 026239 75 EVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEE 132 (241)
Q Consensus 75 ~~~~dlIilD~~mp~~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~ 132 (241)
+...|+|++- |++.-+|+++.+|+..+ ++||.+.--+..-..+..+-..|..|
T Consensus 236 ~EGAD~lMVK---Pal~YLDIi~~~k~~~~--~~PvaaYqVSGEYaMikaAa~~G~iD 288 (320)
T cd04824 236 SEGADMIMVK---PGTPYLDIVREAKDKHP--DLPLAVYHVSGEYAMLHAAAEAGAFD 288 (320)
T ss_pred HhCCCEEEEc---CCchHHHHHHHHHHhcc--CCCEEEEEccHHHHHHHHHHHcCCCc
Confidence 3446777764 77888999999998764 89999886665555566666666543
No 460
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=52.51 E-value=1.3e+02 Score=24.78 Aligned_cols=108 Identities=22% Similarity=0.123 Sum_probs=72.0
Q ss_pred cceEEEEeCCHHHHHHHHHHhhcCCCEE----EEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEE----eCC
Q 026239 15 QFHVLAVDDSIIDRKLIERLLKTSSYQV----TTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVIT----DYC 86 (241)
Q Consensus 15 ~~~ILiVdd~~~~~~~l~~~L~~~g~~v----~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIil----D~~ 86 (241)
-+.|+.+-++......++..=+ .|..+ ..+.+..++...+.... +|.+++ |..
T Consensus 83 ~~tV~g~A~~~TI~~~i~~A~~-~~~~v~iDl~~~~~~~~~~~~l~~~g------------------vd~~~~H~g~D~q 143 (217)
T COG0269 83 WVTVLGAADDATIKKAIKVAKE-YGKEVQIDLIGVWDPEQRAKWLKELG------------------VDQVILHRGRDAQ 143 (217)
T ss_pred EEEEEecCCHHHHHHHHHHHHH-cCCeEEEEeecCCCHHHHHHHHHHhC------------------CCEEEEEecccHh
Confidence 3667777777777766665443 44332 23567788888886444 447775 445
Q ss_pred CCCCCH-HHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhccccc-----ccCCCCHHHH
Q 026239 87 MPGMTG-YDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEF-----FLKPVRLSDL 143 (241)
Q Consensus 87 mp~~~g-~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~-----l~KP~~~~~L 143 (241)
+.|.+- ++.+..+++... ..--|.+++.-.++.+..+...|++-| |.+.-++.+-
T Consensus 144 ~~G~~~~~~~l~~ik~~~~--~g~~vAVaGGI~~~~i~~~~~~~~~ivIvGraIt~a~dp~~~ 204 (217)
T COG0269 144 AAGKSWGEDDLEKIKKLSD--LGAKVAVAGGITPEDIPLFKGIGADIVIVGRAITGAKDPAEA 204 (217)
T ss_pred hcCCCccHHHHHHHHHhhc--cCceEEEecCCCHHHHHHHhcCCCCEEEECchhcCCCCHHHH
Confidence 556654 788888887654 225667888889999999999998766 4555555443
No 461
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=52.44 E-value=1.3e+02 Score=26.89 Aligned_cols=64 Identities=20% Similarity=0.233 Sum_probs=40.7
Q ss_pred ceEEEEeCCHH----HHHHHHHHhhcCCCEEEEEC---------CHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEE
Q 026239 16 FHVLAVDDSII----DRKLIERLLKTSSYQVTTVD---------SGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVI 82 (241)
Q Consensus 16 ~~ILiVdd~~~----~~~~l~~~L~~~g~~v~~~~---------~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIi 82 (241)
-++|||-|... ....+...|+..|..+..++ +..++.+.++.. .+|+||
T Consensus 32 ~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~------------------~~D~Ii 93 (383)
T PRK09860 32 TRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKEN------------------NCDSVI 93 (383)
T ss_pred CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHc------------------CCCEEE
Confidence 58899987643 34467777887777665543 244566666444 355777
Q ss_pred EeCCCCCCCHHHHHHHHH
Q 026239 83 TDYCMPGMTGYDLLKKIK 100 (241)
Q Consensus 83 lD~~mp~~~g~~ll~~ir 100 (241)
- +.|.+.+|..|.+.
T Consensus 94 a---iGGGS~iD~AK~ia 108 (383)
T PRK09860 94 S---LGGGSPHDCAKGIA 108 (383)
T ss_pred E---eCCchHHHHHHHHH
Confidence 2 45777788777764
No 462
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=52.39 E-value=1.1e+02 Score=27.09 Aligned_cols=66 Identities=12% Similarity=0.142 Sum_probs=41.9
Q ss_pred EEEEeCCCCC-CCHHHHHHHHHhcCCCCCCcEEEEcc-CCChHHHHHHHHhcccccccCCCCHHHHHHhhHHH
Q 026239 80 LVITDYCMPG-MTGYDLLKKIKESSSLRDIPVVIMSS-ENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHL 150 (241)
Q Consensus 80 lIilD~~mp~-~~g~~ll~~ir~~~~~~~ipvIils~-~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l 150 (241)
.+|++..-+. ..--.++..+ .. ...|+.... ..+.......++.|+++.+++|-++.++.++...+
T Consensus 91 ~viv~~~dW~iIPlEnlIA~~-~~----~~~l~a~v~~~~eA~~a~~~LE~G~dGVvl~~~d~~ei~~~~~~~ 158 (344)
T PRK02290 91 YVIVEGRDWTIIPLENLIADL-GQ----SGKIIAGVADAEEAKLALEILEKGVDGVLLDPDDPNEIKAIVALI 158 (344)
T ss_pred EEEEECCCCcEecHHHHHhhh-cC----CceEEEEeCCHHHHHHHHHHhccCCCeEEECCCCHHHHHHHHHHH
Confidence 5565554332 2233456666 32 344554443 33455566789999999999999999998776554
No 463
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=52.29 E-value=1.2e+02 Score=25.20 Aligned_cols=65 Identities=12% Similarity=0.123 Sum_probs=44.6
Q ss_pred CcceEEEEe------CCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCC
Q 026239 14 SQFHVLAVD------DSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCM 87 (241)
Q Consensus 14 ~~~~ILiVd------d~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~m 87 (241)
...+|++|- |...........++..|+.+..+...++.++.+.. .|+|++
T Consensus 30 ~~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~d~~~~l~~--------------------ad~I~v---- 85 (233)
T PRK05282 30 GRRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVADPVAAIEN--------------------AEAIFV---- 85 (233)
T ss_pred CCCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccchhhHHHHhc--------------------CCEEEE----
Confidence 356787773 33444566888888999998888777776666632 457776
Q ss_pred CCCCHHHHHHHHHhc
Q 026239 88 PGMTGYDLLKKIKES 102 (241)
Q Consensus 88 p~~~g~~ll~~ir~~ 102 (241)
+|.+-+.+++.++..
T Consensus 86 ~GGnt~~l~~~l~~~ 100 (233)
T PRK05282 86 GGGNTFQLLKQLYER 100 (233)
T ss_pred CCccHHHHHHHHHHC
Confidence 577777777776644
No 464
>COG4378 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.20 E-value=19 Score=25.32 Aligned_cols=75 Identities=23% Similarity=0.278 Sum_probs=41.3
Q ss_pred eEEEEeCCHHHHHHHHHHhhcCCCEEE-EECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHHHH
Q 026239 17 HVLAVDDSIIDRKLIERLLKTSSYQVT-TVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYDL 95 (241)
Q Consensus 17 ~ILiVdd~~~~~~~l~~~L~~~g~~v~-~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~~l 95 (241)
.||+|..|..- -|...|.+.||.-. .++ |.+. ...+..- ..+.|+|++=.+. =+-.+
T Consensus 2 SvlviGaD~lg--~I~~kL~e~GfskIeHvt-gRk~-~~~kk~I---------------ps~~dlilvLtdf---~nHNl 59 (103)
T COG4378 2 SVLVIGADELG--PIRAKLHELGFSKIEHVT-GRKN-RVNKKPI---------------PSDTDLILVLTDF---LNHNL 59 (103)
T ss_pred eEEEEcccccc--cHHHHHHhcChhheEEee-cccc-ccccccC---------------CCCccEEEEEhhh---hcchH
Confidence 48889877643 46778888898533 332 2221 0001111 1234565543322 34557
Q ss_pred HHHHHhcCCCCCCcEEEE
Q 026239 96 LKKIKESSSLRDIPVVIM 113 (241)
Q Consensus 96 l~~ir~~~~~~~ipvIil 113 (241)
.+.|+.....+++|++.-
T Consensus 60 ~~~iK~eakk~~ip~~~a 77 (103)
T COG4378 60 MKKIKNEAKKRKIPLVCA 77 (103)
T ss_pred HHHHHHHHhhcCCCeEEe
Confidence 777776666678998864
No 465
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=52.08 E-value=40 Score=26.78 Aligned_cols=41 Identities=15% Similarity=0.217 Sum_probs=17.1
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEcc--CCChHHHHHHHHhcccccc
Q 026239 92 GYDLLKKIKESSSLRDIPVVIMSS--ENVPSRISRCLEEGAEEFF 134 (241)
Q Consensus 92 g~~ll~~ir~~~~~~~ipvIils~--~~~~~~~~~~l~~Ga~~~l 134 (241)
|+++++.+++..+ ++|+++... ......+..+.++|++.++
T Consensus 40 g~~~i~~i~~~~~--~~~i~~~~~v~~~~~~~~~~~~~aGad~i~ 82 (202)
T cd04726 40 GMEAVRALREAFP--DKIIVADLKTADAGALEAEMAFKAGADIVT 82 (202)
T ss_pred CHHHHHHHHHHCC--CCEEEEEEEeccccHHHHHHHHhcCCCEEE
Confidence 4555555554322 445444211 1111223444555555443
No 466
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=52.05 E-value=53 Score=28.74 Aligned_cols=52 Identities=19% Similarity=0.428 Sum_probs=37.1
Q ss_pred cccccEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccc
Q 026239 75 EVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEE 132 (241)
Q Consensus 75 ~~~~dlIilD~~mp~~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~ 132 (241)
+...|+|++- |++.-+|+++.+|+.. ++||.+.--+..-..+..+...|..|
T Consensus 239 ~EGAD~lMVK---Pal~YLDIi~~~k~~~---~~PvaaYqVSGEYaMikaAa~~G~~D 290 (323)
T PRK09283 239 EEGADMVMVK---PALPYLDIIRRVKDEF---NLPVAAYQVSGEYAMIKAAAQNGWID 290 (323)
T ss_pred HhCCCEEEEc---CCchHHHHHHHHHhcC---CCCEEEEEccHHHHHHHHHHHcCCCC
Confidence 3346787764 7888899999999865 68999886665556666666666543
No 467
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=52.03 E-value=1.9e+02 Score=27.78 Aligned_cols=78 Identities=9% Similarity=0.036 Sum_probs=44.9
Q ss_pred eEEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCC--HHH
Q 026239 17 HVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMT--GYD 94 (241)
Q Consensus 17 ~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~--g~~ 94 (241)
.|+-+..+......+...|...|..+....+............++ |++|+ +..++.+ -.+
T Consensus 472 ~i~G~G~S~~~A~~~~~~l~~lg~~~~~~~d~~~~~~~~~~l~~~-----------------DvvI~-iS~sG~t~e~i~ 533 (638)
T PRK14101 472 EFYGLGNSNIVAQDAHYKFFRFGIPTIAYGDLYMQAASAALLGKG-----------------DVIVA-VSKSGRAPELLR 533 (638)
T ss_pred EEEEccHHHHHHHHHHHHHhcCCceEEEcCCHHHHHHHHhcCCCC-----------------CEEEE-EeCCCCCHHHHH
Confidence 334444555555566666777787777666554433222211111 35554 4555543 667
Q ss_pred HHHHHHhcCCCCCCcEEEEccC
Q 026239 95 LLKKIKESSSLRDIPVVIMSSE 116 (241)
Q Consensus 95 ll~~ir~~~~~~~ipvIils~~ 116 (241)
+++..++. .++||.+|+.
T Consensus 534 ~~~~Ak~~----Ga~vIaIT~~ 551 (638)
T PRK14101 534 VLDVAMQA----GAKVIAITSS 551 (638)
T ss_pred HHHHHHHC----CCeEEEEcCC
Confidence 77777764 6899999984
No 468
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=52.01 E-value=60 Score=27.46 Aligned_cols=48 Identities=15% Similarity=0.250 Sum_probs=30.9
Q ss_pred ccEEEEeCC---------CCCCCHHHHHHHHHhcCCCCCCcEEEEccCCCh---HHHHHHHHhccc
Q 026239 78 VNLVITDYC---------MPGMTGYDLLKKIKESSSLRDIPVVIMSSENVP---SRISRCLEEGAE 131 (241)
Q Consensus 78 ~dlIilD~~---------mp~~~g~~ll~~ir~~~~~~~ipvIils~~~~~---~~~~~~l~~Ga~ 131 (241)
+++|++|++ .|+ ..++++.|+.. .++++++|+.... ....+.-..|..
T Consensus 2 ~~~~~~D~DGtl~~~~~~~~g--a~e~l~~L~~~----g~~~~~~Tnns~~~~~~~~~~l~~~G~~ 61 (279)
T TIGR01452 2 AQGFIFDCDGVLWLGERVVPG--APELLDRLARA----GKAALFVTNNSTKSRAEYALKFARLGFN 61 (279)
T ss_pred ccEEEEeCCCceEcCCeeCcC--HHHHHHHHHHC----CCeEEEEeCCCCCCHHHHHHHHHHcCCC
Confidence 457777765 232 57889999864 6799999985432 333344556654
No 469
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=51.90 E-value=52 Score=26.89 Aligned_cols=56 Identities=16% Similarity=0.227 Sum_probs=42.0
Q ss_pred cccEEEEeCC--CCCCCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhccccccc
Q 026239 77 GVNLVITDYC--MPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFL 135 (241)
Q Consensus 77 ~~dlIilD~~--mp~~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~ 135 (241)
.+++|.++.. .......++++++++.. ++|+++=-+-.+.+.+..+++.|||.++.
T Consensus 147 G~~~i~Le~~sGa~~~v~~e~i~~Vk~~~---~~Pv~vGGGIrs~e~a~~l~~~GAD~VVV 204 (205)
T TIGR01769 147 GMKWVYLEAGSGASYPVNPETISLVKKAS---GIPLIVGGGIRSPEIAYEIVLAGADAIVT 204 (205)
T ss_pred CCCEEEEEcCCCCCCCCCHHHHHHHHHhh---CCCEEEeCCCCCHHHHHHHHHcCCCEEEe
Confidence 4568888663 12223478999999854 68999888888889998888999988763
No 470
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=51.90 E-value=69 Score=26.14 Aligned_cols=54 Identities=15% Similarity=0.255 Sum_probs=39.7
Q ss_pred EEEEeCCCCC-C--CHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccC
Q 026239 80 LVITDYCMPG-M--TGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLK 136 (241)
Q Consensus 80 lIilD~~mp~-~--~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~K 136 (241)
+.|+|+.--. . .-+++++.+++.. .+|+.+=.+-.+.+.+..+++.||+..++-
T Consensus 45 l~v~dl~~~~~g~~~~~~~i~~i~~~~---~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlg 101 (230)
T TIGR00007 45 IHVVDLDGAKEGGPVNLPVIKKIVRET---GVPVQVGGGIRSLEDVEKLLDLGVDRVIIG 101 (230)
T ss_pred EEEEeCCccccCCCCcHHHHHHHHHhc---CCCEEEeCCcCCHHHHHHHHHcCCCEEEEC
Confidence 7777776532 1 2468889988753 578887666677889999999999987653
No 471
>PF13552 DUF4127: Protein of unknown function (DUF4127)
Probab=51.83 E-value=53 Score=30.70 Aligned_cols=76 Identities=17% Similarity=0.256 Sum_probs=51.5
Q ss_pred EeCCHHHHHHHHHHhhcCCCEEEEE-----------CCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCC
Q 026239 21 VDDSIIDRKLIERLLKTSSYQVTTV-----------DSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPG 89 (241)
Q Consensus 21 Vdd~~~~~~~l~~~L~~~g~~v~~~-----------~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~ 89 (241)
+||-|........+.+..|++|.+- .+.+...++|....+ ..|.+|+.++|--
T Consensus 7 LD~RP~n~~~~~~~a~~~g~~v~~Pp~~~l~~~~~~gd~~~l~~Wl~~~~~----------------~~d~~ViS~D~L~ 70 (497)
T PF13552_consen 7 LDDRPCNYDFPVDLAKIAGYEVITPPKELLGDKKQPGDPEALWDWLEENAP----------------DADAAVISTDMLL 70 (497)
T ss_pred CCCCCCChHHHHHHHHhcCcEEecCCHHHhcCCCCCCCHHHHHHHHHhccc----------------cCCEEEEEHHhhh
Confidence 4788888888888888888888753 346677777765533 3557777665532
Q ss_pred C-----------------CHHHHHHHHHhcCCCCCCcEEEEc
Q 026239 90 M-----------------TGYDLLKKIKESSSLRDIPVVIMS 114 (241)
Q Consensus 90 ~-----------------~g~~ll~~ir~~~~~~~ipvIils 114 (241)
- .-++.++.||...+ ++||.+++
T Consensus 71 yGGLv~SR~~~~~~~~~~~rl~~l~~lk~~~p--~~~iyaf~ 110 (497)
T PF13552_consen 71 YGGLVPSRIHHLSLEEALERLERLRELKARNP--NLPIYAFS 110 (497)
T ss_pred hcCcHhhcCCCCCHHHHHHHHHHHHHHHHHCC--CCeEEEEE
Confidence 1 12567778887765 88888774
No 472
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=51.67 E-value=78 Score=24.29 Aligned_cols=88 Identities=16% Similarity=0.207 Sum_probs=43.3
Q ss_pred ceEEEEeCCHHHHH----HHHHHhhcC----CCEEE-EECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCC
Q 026239 16 FHVLAVDDSIIDRK----LIERLLKTS----SYQVT-TVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYC 86 (241)
Q Consensus 16 ~~ILiVdd~~~~~~----~l~~~L~~~----g~~v~-~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~ 86 (241)
-+|+++.|+..... .+...|... ++.+. ..-+|..+..++.....+ .....+|+|++-+.
T Consensus 2 ~~v~~~GDSit~g~~~~~~~~~~l~~~~~~~~~~v~n~g~~G~t~~~~~~~~~~~-----------~~~~~~d~v~l~~G 70 (191)
T cd01834 2 DRIVFIGNSITDRGGYVGYVETYLAARYPELKLTFRNLGWSGDTVSDLAARRDRD-----------VLPAKPDVVSIMFG 70 (191)
T ss_pred CEEEEeCCChhhccccHHHHHHHHHHhCCCCCcEEEEcccCccchhhhhhhhhcc-----------cccCCCCEEEEEee
Confidence 37888888866532 233344322 34444 233444443333111110 12345789999554
Q ss_pred CCCCC--------------H-HHHHHHHHhcCCCCCCcEEEEccC
Q 026239 87 MPGMT--------------G-YDLLKKIKESSSLRDIPVVIMSSE 116 (241)
Q Consensus 87 mp~~~--------------g-~~ll~~ir~~~~~~~ipvIils~~ 116 (241)
.-+.- + -.+++.+++.. +..+||+++..
T Consensus 71 ~ND~~~~~~~~~~~~~~~~~l~~~v~~~~~~~--~~~~ii~~~p~ 113 (191)
T cd01834 71 INDSFRGFDDPVGLEKFKTNLRRLIDRLKNKE--SAPRIVLVSPI 113 (191)
T ss_pred cchHhhcccccccHHHHHHHHHHHHHHHHccc--CCCcEEEECCc
Confidence 33211 1 13555665333 37788888754
No 473
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=51.66 E-value=71 Score=27.84 Aligned_cols=58 Identities=12% Similarity=0.071 Sum_probs=39.0
Q ss_pred ceEEEEeCCHHHHHHHHHHhhcCCCEEE-EECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCC
Q 026239 16 FHVLAVDDSIIDRKLIERLLKTSSYQVT-TVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMP 88 (241)
Q Consensus 16 ~~ILiVdd~~~~~~~l~~~L~~~g~~v~-~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp 88 (241)
.+|+.+|-|+......+..|+.++-.+. ...+..+..+.+.... -..+|.|++|+...
T Consensus 45 g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~~~~---------------~~~vDgIl~DLGvS 103 (305)
T TIGR00006 45 GRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHLDELL---------------VTKIDGILVDLGVS 103 (305)
T ss_pred CEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHHhcC---------------CCcccEEEEeccCC
Confidence 7899999999999888888876544454 4456666555553221 12477899887543
No 474
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=51.61 E-value=71 Score=27.90 Aligned_cols=37 Identities=24% Similarity=0.205 Sum_probs=22.1
Q ss_pred HHHHHHHHHhhcCCCEEEEECCH------HHHHHHhcccCCCC
Q 026239 26 IDRKLIERLLKTSSYQVTTVDSG------SKALEFLGLHEDDG 62 (241)
Q Consensus 26 ~~~~~l~~~L~~~g~~v~~~~~~------~~al~~l~~~~~d~ 62 (241)
.+...+...+...||.+..+.+. .++++.+.....|+
T Consensus 75 ~i~~gi~~~~~~~gy~~~l~~~~~~~~~e~~~~~~l~~~~vdG 117 (333)
T COG1609 75 EILKGIEEAAREAGYSLLLANTDDDPEKEREYLETLLQKRVDG 117 (333)
T ss_pred HHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCE
Confidence 34455666677788888765433 24556665555553
No 475
>PRK08999 hypothetical protein; Provisional
Probab=51.44 E-value=25 Score=30.34 Aligned_cols=53 Identities=19% Similarity=0.370 Sum_probs=38.9
Q ss_pred cccEEEEeCCCCC-------CCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhccccc
Q 026239 77 GVNLVITDYCMPG-------MTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEF 133 (241)
Q Consensus 77 ~~dlIilD~~mp~-------~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~ 133 (241)
.+|.|++.-..+. .-|++.++++++.. ++||+++.+- +.+.+..+++.|++++
T Consensus 246 ~~dyi~~gpvf~t~tk~~~~~~g~~~~~~~~~~~---~~Pv~AiGGI-~~~~~~~~~~~g~~gv 305 (312)
T PRK08999 246 GVDFAVLSPVQPTASHPGAAPLGWEGFAALIAGV---PLPVYALGGL-GPGDLEEAREHGAQGI 305 (312)
T ss_pred CCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhC---CCCEEEECCC-CHHHHHHHHHhCCCEE
Confidence 3567766554431 24788889888753 7999999876 6777888999999876
No 476
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=51.37 E-value=1.4e+02 Score=24.64 Aligned_cols=66 Identities=17% Similarity=0.254 Sum_probs=42.4
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHHH
Q 026239 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMK 152 (241)
Q Consensus 78 ~dlIilD~~mp~~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~~ 152 (241)
.|++|+-... +.-|..+++.+.. .+|||+........ .....|..+++.++.+.+++...+..++.
T Consensus 253 ad~~i~ps~~-e~~~~~~~Ea~a~-----G~Pvi~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~i~~ll~ 318 (348)
T cd03820 253 ASIFVLTSRF-EGFPMVLLEAMAF-----GLPVISFDCPTGPS---EIIEDGVNGLLVPNGDVEALAEALLRLME 318 (348)
T ss_pred CCEEEeCccc-cccCHHHHHHHHc-----CCCEEEecCCCchH---hhhccCcceEEeCCCCHHHHHHHHHHHHc
Confidence 3577766544 3336667776664 67887543223222 33455668899999999999887777754
No 477
>PRK14994 SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional
Probab=51.36 E-value=96 Score=26.73 Aligned_cols=46 Identities=26% Similarity=0.402 Sum_probs=31.3
Q ss_pred cEEEE-eCCCCC--CCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcc
Q 026239 79 NLVIT-DYCMPG--MTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGA 130 (241)
Q Consensus 79 dlIil-D~~mp~--~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga 130 (241)
+++++ |..+|. ..|..+++.+++. +++|.++.+.. .....+..+|.
T Consensus 86 ~ValvSdaGdP~I~dpg~~Lv~~~~~~----gi~v~vIPGiS--A~~aA~a~sG~ 134 (287)
T PRK14994 86 NIALVSDAGTPLINDPGYHLVRTCREA----GIRVVPLPGPC--AAITALSAAGL 134 (287)
T ss_pred eEEEEccCCCCceeCCHHHHHHHHHHC----CCCEEEeCCHH--HHHHHHHHcCC
Confidence 36666 899997 4699999999974 67888887654 23333334453
No 478
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=51.32 E-value=93 Score=25.87 Aligned_cols=80 Identities=13% Similarity=0.153 Sum_probs=45.3
Q ss_pred EeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCccccccc-EEEEeCCCCCCCHHHHHHHH
Q 026239 21 VDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVN-LVITDYCMPGMTGYDLLKKI 99 (241)
Q Consensus 21 Vdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~d-lIilD~~mp~~~g~~ll~~i 99 (241)
+..+......+...|...|..+..+.+............++ | +|++.+.=...+-.++++..
T Consensus 8 ~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~-----------------d~~i~iS~sG~t~~~~~~~~~a 70 (268)
T TIGR00393 8 IGKSGLIGKKIVATFASTGTPSFFLHPTEAMHGDLGMVEPN-----------------DVVLMISYSGESLELLNLIPHL 70 (268)
T ss_pred cChHHHHHHHHHHHHHhcCCceEEeCHhHHhhcccCCCCCC-----------------CEEEEEeCCCCCHHHHHHHHHH
Confidence 34455556667767777888877666544433222111111 2 34444433334456777777
Q ss_pred HhcCCCCCCcEEEEccCCChHH
Q 026239 100 KESSSLRDIPVVIMSSENVPSR 121 (241)
Q Consensus 100 r~~~~~~~ipvIils~~~~~~~ 121 (241)
++. .+++|.+|+......
T Consensus 71 ~~~----g~~ii~iT~~~~s~l 88 (268)
T TIGR00393 71 KRL----SHKIIAFTGSPNSSL 88 (268)
T ss_pred HHc----CCcEEEEECCCCCcc
Confidence 764 689999998765543
No 479
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=51.29 E-value=1.6e+02 Score=25.40 Aligned_cols=68 Identities=7% Similarity=-0.022 Sum_probs=41.9
Q ss_pred HHHHHhhcCCCEEEE-------ECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCC-CHHHHHHHHHh
Q 026239 30 LIERLLKTSSYQVTT-------VDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGM-TGYDLLKKIKE 101 (241)
Q Consensus 30 ~l~~~L~~~g~~v~~-------~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~-~g~~ll~~ir~ 101 (241)
.++..|++.|+++.. ..|....+..+.... +|+|++-.. +. ++..+++.++.
T Consensus 157 ~~~~~l~~~G~~vv~~~~~~~~~~D~s~~i~~i~~~~------------------~d~v~~~~~--~~~~~~~~~~~~~~ 216 (347)
T cd06336 157 AYKAAWEAAGGKVVSEEPYDPGTTDFSPIVTKLLAEK------------------PDVIFLGGP--SPAPAALVIKQARE 216 (347)
T ss_pred HHHHHHHHcCCEEeeecccCCCCcchHHHHHHHHhcC------------------CCEEEEcCC--CchHHHHHHHHHHH
Confidence 345566677776642 135556666665443 458886443 44 67889999988
Q ss_pred cCCCCCCcEEEEccCCCh
Q 026239 102 SSSLRDIPVVIMSSENVP 119 (241)
Q Consensus 102 ~~~~~~ipvIils~~~~~ 119 (241)
... +.+++.++.....
T Consensus 217 ~g~--~~~~~~~~~~~~~ 232 (347)
T cd06336 217 LGF--KGGFLSCTGDKYD 232 (347)
T ss_pred cCC--CccEEeccCCCch
Confidence 754 5567766655443
No 480
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=51.23 E-value=89 Score=25.47 Aligned_cols=21 Identities=10% Similarity=0.169 Sum_probs=9.7
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEcc
Q 026239 92 GYDLLKKIKESSSLRDIPVVIMSS 115 (241)
Q Consensus 92 g~~ll~~ir~~~~~~~ipvIils~ 115 (241)
|..+++.+.+.+ .-.|.++++
T Consensus 105 ~~~a~~~l~~~g---~~~i~~i~~ 125 (270)
T cd06296 105 GLAATEHLLELG---HRRIGFITG 125 (270)
T ss_pred HHHHHHHHHHcC---CCcEEEEcC
Confidence 344444554432 345555554
No 481
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=51.19 E-value=1.2e+02 Score=24.76 Aligned_cols=38 Identities=16% Similarity=0.108 Sum_probs=26.6
Q ss_pred ceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHH
Q 026239 16 FHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALE 53 (241)
Q Consensus 16 ~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~ 53 (241)
++|||..........+.+.|...|+.|..++...+.+.
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~ 38 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQ 38 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence 36888888777777788877778998886544333333
No 482
>PF06073 DUF934: Bacterial protein of unknown function (DUF934); InterPro: IPR008318 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=51.14 E-value=95 Score=22.70 Aligned_cols=65 Identities=12% Similarity=0.137 Sum_probs=44.2
Q ss_pred cEEEEeCCC-CCCCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCC-CCHHHHHH
Q 026239 79 NLVITDYCM-PGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKP-VRLSDLNK 145 (241)
Q Consensus 79 dlIilD~~m-p~~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP-~~~~~L~~ 145 (241)
++|.++.-- -+.-|+.+.+.||+...+. --|--++.-..+-+.-..+.|.+.|.++. .+.+...+
T Consensus 21 ~lI~i~FP~F~DGRgfS~ArlLR~r~gy~--GelRA~Gdvl~DQl~~l~R~GFdsf~l~~~~~~~~~~~ 87 (110)
T PF06073_consen 21 PLIAIDFPKFTDGRGFSQARLLRERYGYT--GELRAVGDVLRDQLFYLRRCGFDSFELREDQDPEDALA 87 (110)
T ss_pred CEEEEECCCcCCchHhHHHHHHHHHcCCC--CcEEEeccchHHHHHHHHHcCCCEEEeCCCCCHHHHHH
Confidence 366555422 2466899999999655432 34556677777888888899999998876 45554433
No 483
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=51.11 E-value=69 Score=27.58 Aligned_cols=67 Identities=21% Similarity=0.331 Sum_probs=44.3
Q ss_pred ECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCC-------CCCCHHHHHHHHHhcCCCCCCcEEEEccCC
Q 026239 45 VDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCM-------PGMTGYDLLKKIKESSSLRDIPVVIMSSEN 117 (241)
Q Consensus 45 ~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~m-------p~~~g~~ll~~ir~~~~~~~ipvIils~~~ 117 (241)
..+.++|.+++.....| ++=+.+.- |+.+ +++++.|++.. ++|+++=.++.
T Consensus 152 ~T~pe~a~~Fv~~TgvD------------------~LAvaiGt~HG~Y~~p~l~-~~~l~~I~~~~---~vPLVlHGgSG 209 (283)
T PRK07998 152 KTEPEKVKDFVERTGCD------------------MLAVSIGNVHGLEDIPRID-IPLLKRIAEVS---PVPLVIHGGSG 209 (283)
T ss_pred cCCHHHHHHHHHHhCcC------------------eeehhccccccCCCCCCcC-HHHHHHHHhhC---CCCEEEeCCCC
Confidence 35777888888655544 33333311 4432 68999998753 79999877665
Q ss_pred C-hHHHHHHHHhccccc
Q 026239 118 V-PSRISRCLEEGAEEF 133 (241)
Q Consensus 118 ~-~~~~~~~l~~Ga~~~ 133 (241)
. .+.+.+|++.|+.-+
T Consensus 210 ~~~e~~~~ai~~Gi~Ki 226 (283)
T PRK07998 210 IPPEILRSFVNYKVAKV 226 (283)
T ss_pred CCHHHHHHHHHcCCcEE
Confidence 4 466778899997644
No 484
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=51.10 E-value=1.6e+02 Score=25.21 Aligned_cols=65 Identities=14% Similarity=0.226 Sum_probs=35.2
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEccC----CChHHHHHHHHhcccccccCCC--CHHHHHHhhHHHH
Q 026239 78 VNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSE----NVPSRISRCLEEGAEEFFLKPV--RLSDLNKLKPHLM 151 (241)
Q Consensus 78 ~dlIilD~~mp~~~g~~ll~~ir~~~~~~~ipvIils~~----~~~~~~~~~l~~Ga~~~l~KP~--~~~~L~~~~~~l~ 151 (241)
.|++|+.. + +..+++.+.. .+|+|++... .......+.+..+-.+++..+- +.++|...+..++
T Consensus 253 ad~~v~~s---g--~~t~~Eam~~-----G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll 322 (350)
T cd03785 253 ADLVISRA---G--ASTVAELAAL-----GLPAILIPLPYAADDHQTANARALVKAGAAVLIPQEELTPERLAAALLELL 322 (350)
T ss_pred cCEEEECC---C--HhHHHHHHHh-----CCCEEEeecCCCCCCcHHHhHHHHHhCCCEEEEecCCCCHHHHHHHHHHHh
Confidence 45776522 2 4445555543 6898876422 1111222333333456777764 7888877776665
Q ss_pred H
Q 026239 152 K 152 (241)
Q Consensus 152 ~ 152 (241)
.
T Consensus 323 ~ 323 (350)
T cd03785 323 S 323 (350)
T ss_pred c
Confidence 4
No 485
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=51.07 E-value=84 Score=25.64 Aligned_cols=34 Identities=18% Similarity=0.231 Sum_probs=26.5
Q ss_pred ceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCHH
Q 026239 16 FHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGS 49 (241)
Q Consensus 16 ~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~ 49 (241)
++|.|+|=..-....+.+.|+..|+.+..+.+..
T Consensus 2 ~~v~iid~~~GN~~sl~~al~~~g~~v~vv~~~~ 35 (210)
T CHL00188 2 MKIGIIDYSMGNLHSVSRAIQQAGQQPCIINSES 35 (210)
T ss_pred cEEEEEEcCCccHHHHHHHHHHcCCcEEEEcCHH
Confidence 5788998775556677888888999998887654
No 486
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=51.00 E-value=49 Score=29.59 Aligned_cols=80 Identities=13% Similarity=0.194 Sum_probs=48.0
Q ss_pred ceEEEEeCCHHH----HHHHHHHhhcCCCEEE---EEC----CHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEe
Q 026239 16 FHVLAVDDSIID----RKLIERLLKTSSYQVT---TVD----SGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITD 84 (241)
Q Consensus 16 ~~ILiVdd~~~~----~~~l~~~L~~~g~~v~---~~~----~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD 84 (241)
.|+.+|..|-+. .+.++.+++..|.+|. .+. +....++.+....| |+||.-
T Consensus 135 ~r~~lvGSdYv~pre~Nri~r~~l~~~GgevvgE~Y~plg~td~~~ii~~I~~~~P------------------d~V~st 196 (363)
T PF13433_consen 135 KRFYLVGSDYVYPRESNRIIRDLLEARGGEVVGERYLPLGATDFDPIIAEIKAAKP------------------DFVFST 196 (363)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEEEE-S-HHHHHHHHHHHHHHT-------------------SEEEEE
T ss_pred ceEEEecCCccchHHHHHHHHHHHHHcCCEEEEEEEecCCchhHHHHHHHHHhhCC------------------CEEEEe
Confidence 789999988543 4556677777787765 222 34455556655554 488885
Q ss_pred CCCCCCCHHHHHHHHHhcCCCC-CCcEEEEcc
Q 026239 85 YCMPGMTGYDLLKKIKESSSLR-DIPVVIMSS 115 (241)
Q Consensus 85 ~~mp~~~g~~ll~~ir~~~~~~-~ipvIils~ 115 (241)
+-|.+.+.|++.++..+..+ .+||+-++-
T Consensus 197 --lvG~s~~aF~r~~~~aG~~~~~~Pi~S~~~ 226 (363)
T PF13433_consen 197 --LVGDSNVAFYRAYAAAGLDPERIPIASLST 226 (363)
T ss_dssp ----TTCHHHHHHHHHHHH-SSS---EEESS-
T ss_pred --CcCCcHHHHHHHHHHcCCCcccCeEEEEec
Confidence 45788999999999765433 477776553
No 487
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=50.99 E-value=1.3e+02 Score=27.48 Aligned_cols=69 Identities=14% Similarity=0.183 Sum_probs=36.0
Q ss_pred ccEEEEeCCCCCCCH----HHHH---HHHHhcCCCCCCcEEEEccCCChHHHHHHH-HhcccccccCCCCHHHHHHhhHH
Q 026239 78 VNLVITDYCMPGMTG----YDLL---KKIKESSSLRDIPVVIMSSENVPSRISRCL-EEGAEEFFLKPVRLSDLNKLKPH 149 (241)
Q Consensus 78 ~dlIilD~~mp~~~g----~~ll---~~ir~~~~~~~ipvIils~~~~~~~~~~~l-~~Ga~~~l~KP~~~~~L~~~~~~ 149 (241)
.|+||++.|-.-... ...+ +.+|+..+ +++||+....... .-...+ .....||+.-+-....+..++..
T Consensus 38 aDviiiNTC~v~~~a~~k~~~~i~~~~~~k~~~p--~~~ivv~Gc~a~~-~~e~~~~~~p~vD~vv~~~~~~~i~~l~~~ 114 (437)
T PRK14331 38 ADLILVNTCTIREKPDQKVLSHLGEYKKIKEKNP--NALIGVCGCLAQR-AGYEIVQKAPFIDIVFGTFNIHHLPELLEQ 114 (437)
T ss_pred CCEEEEeCcceecHHHHHHHHHHHHHHHHHHhCC--CCEEEEEcchhcC-ChHHHHhcCCCCcEEECCCCHHHHHHHHHH
Confidence 579999998764332 3334 45555433 5655554322211 111222 23334677777766666655444
No 488
>PRK04148 hypothetical protein; Provisional
Probab=50.87 E-value=53 Score=24.94 Aligned_cols=59 Identities=20% Similarity=0.240 Sum_probs=42.3
Q ss_pred CcceEEEEeCCHHHHHHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCH
Q 026239 14 SQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTG 92 (241)
Q Consensus 14 ~~~~ILiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g 92 (241)
...+||.|.=- ....+...|...|++|+.++...++++.+... ..+++..|+.-|+++-
T Consensus 16 ~~~kileIG~G--fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~------------------~~~~v~dDlf~p~~~~ 74 (134)
T PRK04148 16 KNKKIVELGIG--FYFKVAKKLKESGFDVIVIDINEKAVEKAKKL------------------GLNAFVDDLFNPNLEI 74 (134)
T ss_pred cCCEEEEEEec--CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh------------------CCeEEECcCCCCCHHH
Confidence 34678888766 33335566778899999999888888877433 2458888988887653
No 489
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=50.86 E-value=1.4e+02 Score=24.65 Aligned_cols=64 Identities=17% Similarity=0.291 Sum_probs=40.5
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhcccccccCCCCHHHHHHhhHHHHH
Q 026239 79 NLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMK 152 (241)
Q Consensus 79 dlIilD~~mp~~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~~~~l~~ 152 (241)
|++|+-... +.-|..+++.+.. .+|||+...... .+.+..|-.+++..+.+.+++...+..++.
T Consensus 277 di~i~~~~~-~~~~~~~~Ea~~~-----g~pvI~~~~~~~----~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~ 340 (374)
T cd03801 277 DVFVLPSLY-EGFGLVLLEAMAA-----GLPVVASDVGGI----PEVVEDGETGLLVPPGDPEALAEAILRLLD 340 (374)
T ss_pred CEEEecchh-ccccchHHHHHHc-----CCcEEEeCCCCh----hHHhcCCcceEEeCCCCHHHHHHHHHHHHc
Confidence 566654433 3445566666653 678876543322 233455778899999989999877776653
No 490
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=50.59 E-value=70 Score=27.59 Aligned_cols=54 Identities=19% Similarity=0.046 Sum_probs=34.6
Q ss_pred cceEEEEeCCHHHHHHHHHHhhcCCCE---EE-EECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeC
Q 026239 15 QFHVLAVDDSIIDRKLIERLLKTSSYQ---VT-TVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDY 85 (241)
Q Consensus 15 ~~~ILiVdd~~~~~~~l~~~L~~~g~~---v~-~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~ 85 (241)
..+|+-||-+.......+.-+.-.|+. +. ...|.-+.+..++. ...||+||+|-
T Consensus 146 A~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~-----------------~~~fD~IIlDP 203 (286)
T PF10672_consen 146 AKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKK-----------------GGRFDLIILDP 203 (286)
T ss_dssp ESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHH-----------------TT-EEEEEE--
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhc-----------------CCCCCEEEECC
Confidence 457999999999998888888766643 33 55666666665532 23689999984
No 491
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=50.58 E-value=45 Score=29.45 Aligned_cols=40 Identities=8% Similarity=0.233 Sum_probs=31.9
Q ss_pred HHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhccccc
Q 026239 93 YDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEF 133 (241)
Q Consensus 93 ~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~ 133 (241)
++.++.+++... .++|||.+.+-.+.+.+.+.+.+||+.+
T Consensus 276 l~~v~~l~~~~~-~~ipIig~GGI~s~eda~e~l~aGAd~V 315 (344)
T PRK05286 276 TEVIRRLYKELG-GRLPIIGVGGIDSAEDAYEKIRAGASLV 315 (344)
T ss_pred HHHHHHHHHHhC-CCCCEEEECCCCCHHHHHHHHHcCCCHH
Confidence 456777776432 2689999999999999999999999865
No 492
>TIGR03061 pip_yhgE_Nterm YhgE/Pip N-terminal domain. This family contains the N-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03062, represents the conserved C-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=50.51 E-value=1.1e+02 Score=23.46 Aligned_cols=45 Identities=16% Similarity=0.003 Sum_probs=28.5
Q ss_pred cCcceEEEEeCCHHH---------HHHHHHHhhcC-CCEEEEECCHHHHHHHhccc
Q 026239 13 ESQFHVLAVDDSIID---------RKLIERLLKTS-SYQVTTVDSGSKALEFLGLH 58 (241)
Q Consensus 13 ~~~~~ILiVdd~~~~---------~~~l~~~L~~~-g~~v~~~~~~~~al~~l~~~ 58 (241)
...+.|.|||.|... ...+.+.|... .+.+.. .+.++|.+.+...
T Consensus 41 ~~~lpvaVVd~D~s~~~~~~~~~~s~~l~~~l~~~~~~~~~~-~~~~ea~~~l~~g 95 (164)
T TIGR03061 41 LDNLPVAVVNEDKGATYDGKTLNAGDDLVKELKKNDDLDWHF-VSAKEAEKGLADG 95 (164)
T ss_pred cCCCeEEEEECCCCCCcCCcccchHHHHHHHHhcCCCcceEE-cCHHHHHHHhHcC
Confidence 357889999977653 33444445443 455443 4888999888643
No 493
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=50.39 E-value=55 Score=25.73 Aligned_cols=28 Identities=21% Similarity=0.223 Sum_probs=24.0
Q ss_pred EEEeCCHHHHHHHHHHhhcCCCEEEEEC
Q 026239 19 LAVDDSIIDRKLIERLLKTSSYQVTTVD 46 (241)
Q Consensus 19 LiVdd~~~~~~~l~~~L~~~g~~v~~~~ 46 (241)
||||....+...|.+.|+..|+.+.++.
T Consensus 1 lviD~~~~~~~~l~~~l~~~~~~~~v~~ 28 (192)
T PF00117_consen 1 LVIDNGDSFTHSLVRALRELGIDVEVVR 28 (192)
T ss_dssp EEEESSHTTHHHHHHHHHHTTEEEEEEE
T ss_pred CEEeCCHHHHHHHHHHHHHCCCeEEEEE
Confidence 7899998999999999999997776554
No 494
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=50.38 E-value=62 Score=28.13 Aligned_cols=61 Identities=21% Similarity=0.309 Sum_probs=45.4
Q ss_pred CCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEccCC
Q 026239 39 SYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSEN 117 (241)
Q Consensus 39 g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~g~~ll~~ir~~~~~~~ipvIils~~~ 117 (241)
|-.+.+.++...+++++...... ..+|.+++++- -|+..|..+.+.|++. .+++.+++...
T Consensus 120 g~~IlTh~~S~~v~~~l~~A~~~-------------~k~~~V~VtES-RP~~eG~~~ak~L~~~----gI~~~~I~Dsa 180 (301)
T COG1184 120 GDVILTHSFSKTVLEVLKTAADR-------------GKRFKVIVTES-RPRGEGRIMAKELRQS----GIPVTVIVDSA 180 (301)
T ss_pred CCEEEEecCcHHHHHHHHHhhhc-------------CCceEEEEEcC-CCcchHHHHHHHHHHc----CCceEEEechH
Confidence 44566777888888888765543 33478999985 5888899999999986 47777777543
No 495
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=50.34 E-value=86 Score=25.54 Aligned_cols=72 Identities=25% Similarity=0.320 Sum_probs=42.1
Q ss_pred EECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEe-CCCCCC-CHHHHHHHHHhcCCCCCCcEEEEccCCC---
Q 026239 44 TVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITD-YCMPGM-TGYDLLKKIKESSSLRDIPVVIMSSENV--- 118 (241)
Q Consensus 44 ~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD-~~mp~~-~g~~ll~~ir~~~~~~~ipvIils~~~~--- 118 (241)
++.+.++++........- +=|++ +...|. ..+.+++.+++.. ++||.+|.-...
T Consensus 6 cv~s~~~a~~A~~~GAdR------------------iELc~~l~~GGlTPS~g~i~~~~~~~---~ipv~vMIRpr~gdF 64 (201)
T PF03932_consen 6 CVESLEDALAAEAGGADR------------------IELCSNLEVGGLTPSLGLIRQAREAV---DIPVHVMIRPRGGDF 64 (201)
T ss_dssp EESSHHHHHHHHHTT-SE------------------EEEEBTGGGT-B---HHHHHHHHHHT---TSEEEEE--SSSS-S
T ss_pred EeCCHHHHHHHHHcCCCE------------------EEECCCccCCCcCcCHHHHHHHHhhc---CCceEEEECCCCCCc
Confidence 567888888776433221 55665 333343 3678999998743 789998864322
Q ss_pred ----------hHHHHHHHHhcccccccC
Q 026239 119 ----------PSRISRCLEEGAEEFFLK 136 (241)
Q Consensus 119 ----------~~~~~~~l~~Ga~~~l~K 136 (241)
...+..+.++|+++|+.=
T Consensus 65 ~Ys~~E~~~M~~dI~~~~~~GadG~VfG 92 (201)
T PF03932_consen 65 VYSDEEIEIMKEDIRMLRELGADGFVFG 92 (201)
T ss_dssp ---HHHHHHHHHHHHHHHHTT-SEEEE-
T ss_pred cCCHHHHHHHHHHHHHHHHcCCCeeEEE
Confidence 234556788999988653
No 496
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=50.18 E-value=1.5e+02 Score=24.56 Aligned_cols=73 Identities=19% Similarity=0.171 Sum_probs=41.2
Q ss_pred ceEEEEeCCHHHHHHHHHHhhcCCC----EEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCC
Q 026239 16 FHVLAVDDSIIDRKLIERLLKTSSY----QVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMT 91 (241)
Q Consensus 16 ~~ILiVdd~~~~~~~l~~~L~~~g~----~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~ 91 (241)
-+|.|+.|. ..+......|...|. ++.+.+..++++..+. .+|.+++|... .+
T Consensus 71 R~vCIvp~~-~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~--------------------~iDF~vVDc~~--~d 127 (218)
T PF07279_consen 71 RHVCIVPDE-QSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLK--------------------GIDFVVVDCKR--ED 127 (218)
T ss_pred eEEEEcCCh-hhHHHHHHHHhhccccccceEEecCCHHHHHhhcc--------------------CCCEEEEeCCc--hh
Confidence 345555554 445556666766654 2233344666776552 47799999884 34
Q ss_pred HH-HHHHHHHhcCCCCCCcEEEEc
Q 026239 92 GY-DLLKKIKESSSLRDIPVVIMS 114 (241)
Q Consensus 92 g~-~ll~~ir~~~~~~~ipvIils 114 (241)
-. ++++.++-.. .--||+..
T Consensus 128 ~~~~vl~~~~~~~---~GaVVV~~ 148 (218)
T PF07279_consen 128 FAARVLRAAKLSP---RGAVVVCY 148 (218)
T ss_pred HHHHHHHHhccCC---CceEEEEe
Confidence 44 6777666432 33455543
No 497
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=50.13 E-value=1.1e+02 Score=26.19 Aligned_cols=80 Identities=11% Similarity=0.108 Sum_probs=47.5
Q ss_pred cCcceEEEEeCCHHHH-HHHHHHhhcCCCEEEEECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCC--CC
Q 026239 13 ESQFHVLAVDDSIIDR-KLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCM--PG 89 (241)
Q Consensus 13 ~~~~~ILiVdd~~~~~-~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~m--p~ 89 (241)
...++|++.|..|... ..+.+.|...|..|+...|..-+.- +. .+|.||+..+- .+
T Consensus 133 gk~~~V~v~EsrP~~qG~~la~eL~~~GI~vtlI~Dsa~~~~-m~--------------------~vd~VivGAD~I~~n 191 (275)
T PRK08335 133 GKRFKVILTESAPDYEGLALANELEFLGIEFEVITDAQLGLF-AK--------------------EATLALVGADNVTRD 191 (275)
T ss_pred CCceEEEEecCCCchhHHHHHHHHHHCCCCEEEEeccHHHHH-HH--------------------hCCEEEECccEEecC
Confidence 3468999888877543 3457778888998886655443332 21 15688875443 22
Q ss_pred -----CCHHHHHHHHHhcCCCCCCcEEEEccC
Q 026239 90 -----MTGYDLLKKIKESSSLRDIPVVIMSSE 116 (241)
Q Consensus 90 -----~~g~~ll~~ir~~~~~~~ipvIils~~ 116 (241)
.-|.-.+..+-... ++|+++++..
T Consensus 192 G~v~NKiGT~~lA~~Ak~~---~vPfyV~a~~ 220 (275)
T PRK08335 192 GYVVNKAGTYLLALACHDN---GVPFYVAAET 220 (275)
T ss_pred CCEeehhhHHHHHHHHHHc---CCCEEEECcc
Confidence 22433444443322 7899998653
No 498
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=50.07 E-value=1.6e+02 Score=26.46 Aligned_cols=104 Identities=13% Similarity=0.166 Sum_probs=0.0
Q ss_pred cCcceEEEEe---------CCHHHHHHHHHHhhcCCCEEEE--ECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccEE
Q 026239 13 ESQFHVLAVD---------DSIIDRKLIERLLKTSSYQVTT--VDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLV 81 (241)
Q Consensus 13 ~~~~~ILiVd---------d~~~~~~~l~~~L~~~g~~v~~--~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlI 81 (241)
+....++++. .....-..+.++++..+..|.. +.+.++|+.++. ...| .|
T Consensus 153 eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~~IPVI~G~V~t~e~A~~~~~-aGaD------------------gV 213 (369)
T TIGR01304 153 KAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGELDVPVIAGGVNDYTTALHLMR-TGAA------------------GV 213 (369)
T ss_pred HCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHH-cCCC------------------EE
Q ss_pred ------------EEeCCCCCCCHHHHHHHHHhc----CCCCCCcEEEEccCCChHHHHHHHHhccccccc
Q 026239 82 ------------ITDYCMPGMTGYDLLKKIKES----SSLRDIPVVIMSSENVPSRISRCLEEGAEEFFL 135 (241)
Q Consensus 82 ------------ilD~~mp~~~g~~ll~~ir~~----~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~ 135 (241)
++++..|..+-+.-+...+.. ...+.+|||.-.+-.+...+.+|+.+||+.+..
T Consensus 214 ~~G~gg~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~kAlAlGAdaV~i 283 (369)
T TIGR01304 214 IVGPGGANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLVKAIACGADAVVL 283 (369)
T ss_pred EECCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHHcCCCEeee
No 499
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=49.91 E-value=2.2e+02 Score=26.52 Aligned_cols=106 Identities=16% Similarity=0.174 Sum_probs=0.0
Q ss_pred hhhhhcCcceEEEEe----CCHHHHHHHHHHhhcC-CCEEEE--ECCHHHHHHHhcccCCCCCCCCCCCCCCcccccccE
Q 026239 8 AAAVAESQFHVLAVD----DSIIDRKLIERLLKTS-SYQVTT--VDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNL 80 (241)
Q Consensus 8 ~~~~~~~~~~ILiVd----d~~~~~~~l~~~L~~~-g~~v~~--~~~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dl 80 (241)
..........++++| .+....+.++.+=+.+ +..|.. +.+.+.|..++ +..+|.
T Consensus 232 a~~Lv~aGvd~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~-------------------~aGad~ 292 (479)
T PRK07807 232 ARALLEAGVDVLVVDTAHGHQEKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLV-------------------EAGADI 292 (479)
T ss_pred HHHHHHhCCCEEEEeccCCccHHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHH-------------------HcCCCE
Q ss_pred EEEeCCC--------------CCCCHHHHHHHHHhcCCCCCCcEEEEccCCChHHHHHHHHhccccccc
Q 026239 81 VITDYCM--------------PGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFL 135 (241)
Q Consensus 81 IilD~~m--------------p~~~g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~~~l~~Ga~~~l~ 135 (241)
|-+.+.- |..+-+.-+....... ++|||.-.+-..+..+..|+.+||+....
T Consensus 293 v~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~~~---~~~via~ggi~~~~~~~~al~~ga~~v~~ 358 (479)
T PRK07807 293 VKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAAREL---GAHVWADGGVRHPRDVALALAAGASNVMI 358 (479)
T ss_pred EEECccCCcccccccccCCchhHHHHHHHHHHHHHhc---CCcEEecCCCCCHHHHHHHHHcCCCeeec
No 500
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=49.89 E-value=86 Score=26.21 Aligned_cols=69 Identities=14% Similarity=0.054 Sum_probs=0.0
Q ss_pred CHHHHHHHhcccCCCCCCCCCCCCCCcccccccEEEEeCCCCCCC---HHHHHHHHHhcCCCCCCcEEEEccCCChHHHH
Q 026239 47 SGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMT---GYDLLKKIKESSSLRDIPVVIMSSENVPSRIS 123 (241)
Q Consensus 47 ~~~~al~~l~~~~~d~~~~~~~~~~~~~~~~~dlIilD~~mp~~~---g~~ll~~ir~~~~~~~ipvIils~~~~~~~~~ 123 (241)
+..++++.+....... +|++|+.--|+- .+++++.+++.. ++|||+-.+-.+.+++.
T Consensus 150 ~~~~~~~~~~~~g~~~-----------------ii~tdI~~dGt~~G~d~~l~~~l~~~~---~~pviasGGv~s~eDl~ 209 (243)
T TIGR01919 150 DLEVLERLLDSGGCSR-----------------VVVTDSKKDGLSGGPNELLLEVVAART---DAIVAASGGSSLLDDLR 209 (243)
T ss_pred cHHHHHHHHHhCCCCE-----------------EEEEecCCcccCCCcCHHHHHHHHhhC---CCCEEEECCcCCHHHHH
Q ss_pred HHHHh---ccccccc
Q 026239 124 RCLEE---GAEEFFL 135 (241)
Q Consensus 124 ~~l~~---Ga~~~l~ 135 (241)
.+.+. |+++.+.
T Consensus 210 ~l~~l~~~Gv~gviv 224 (243)
T TIGR01919 210 AIKYLDEGGVSVAIG 224 (243)
T ss_pred HHHhhccCCeeEEEE
Done!