Query 026240
Match_columns 241
No_of_seqs 267 out of 1182
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 08:52:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026240.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026240hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.9 1.6E-24 5.3E-29 157.2 5.8 60 25-84 2-62 (63)
2 3igm_B PF14_0633 protein; AP2 87.9 0.2 6.9E-06 37.5 1.6 23 22-44 4-27 (77)
3 1u3e_M HNH homing endonuclease 80.4 0.26 8.8E-06 40.4 -0.7 37 27-66 110-146 (174)
4 1z1b_A Integrase; protein-DNA 72.5 3.9 0.00013 34.9 4.5 41 28-72 15-55 (356)
5 3jtz_A Integrase; four strande 59.7 19 0.00066 26.5 5.6 44 29-72 28-75 (88)
6 1x60_A Sporulation-specific N- 42.9 16 0.00053 25.5 2.6 33 38-70 36-68 (79)
7 1uta_A FTSN, MSGA, cell divisi 41.8 22 0.00074 25.1 3.2 33 38-70 36-68 (81)
8 3ju0_A Phage integrase; four s 40.7 47 0.0016 25.4 5.2 44 29-72 28-75 (108)
9 2ftc_I Mitochondrial ribosomal 24.8 1.1E+02 0.0037 23.9 4.9 36 36-73 79-114 (118)
10 1b69_A Protein (integrase); in 23.6 50 0.0017 23.9 2.5 29 24-52 10-39 (69)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.90 E-value=1.6e-24 Score=157.24 Aligned_cols=60 Identities=68% Similarity=1.212 Sum_probs=56.9
Q ss_pred eeeEEEECCCCcEEEEEecCCC-CeEEeeCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 026240 25 HFRGVRKRPWGRYAAEIRDPGK-KSRVWLGTFDTAEEAARAYDAAAREFRGAKAKTNFPLP 84 (241)
Q Consensus 25 ~YRGV~~~~~GRW~A~I~~~~k-kkri~LGtFdT~EEAArAYD~AA~k~~G~~A~lNFP~~ 84 (241)
+||||++++||||+|+|+++.+ ++++|||+|+|+||||+|||.|+++++|.++++|||.+
T Consensus 2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~ 62 (63)
T 1gcc_A 2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence 5999999999999999999875 68999999999999999999999999999999999964
No 2
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=87.85 E-value=0.2 Score=37.54 Aligned_cols=23 Identities=17% Similarity=0.099 Sum_probs=19.9
Q ss_pred CCceeeEEEECC-CCcEEEEEecC
Q 026240 22 KEVHFRGVRKRP-WGRYAAEIRDP 44 (241)
Q Consensus 22 ~tS~YRGV~~~~-~GRW~A~I~~~ 44 (241)
..|+|+||+|.+ .+.|.|+-.+.
T Consensus 4 ~~Sg~pGVsw~kR~~~WlA~W~e~ 27 (77)
T 3igm_B 4 MSSGYPGVSWNKRMCAWLAFFYDG 27 (77)
T ss_dssp CCSSSTTEEEETTTTEEEEEEEET
T ss_pred CCCCCCcEEeecCCceEEEEEecC
Confidence 568899998887 69999999984
No 3
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=80.39 E-value=0.26 Score=40.43 Aligned_cols=37 Identities=5% Similarity=-0.083 Sum_probs=27.8
Q ss_pred eEEEECCCCcEEEEEecCCCCeEEeeCCCCCHHHHHHHHH
Q 026240 27 RGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYD 66 (241)
Q Consensus 27 RGV~~~~~GRW~A~I~~~~kkkri~LGtFdT~EEAArAYD 66 (241)
+||.+.+.++|.+.|... +.++||.|+|.+|||++|.
T Consensus 110 ~g~~~~~~~k~~~vi~~~---~~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 110 KAQQIAKIKNQKPIIVIS---PDGIEKEYPSTKCACEELG 146 (174)
T ss_dssp HHHHHHHHHTCCCEEEEC---TTSCEEEESCHHHHHHHHT
T ss_pred eeeeeccCCCCceEEEEc---CCceEEeeCCHHHHHHHHC
Confidence 455442235688999884 4578999999999999974
No 4
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=72.47 E-value=3.9 Score=34.90 Aligned_cols=41 Identities=20% Similarity=0.071 Sum_probs=30.3
Q ss_pred EEEECCCCcEEEEEecCCCCeEEeeCCCCCHHHHHHHHHHHHHHh
Q 026240 28 GVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAAREF 72 (241)
Q Consensus 28 GV~~~~~GRW~A~I~~~~kkkri~LGtFdT~EEAArAYD~AA~k~ 72 (241)
||++++.|+|..+... .++++.+|. |..||......+...+
T Consensus 15 ~v~~~~~g~~~~r~~~--~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 15 NLYIRNNGYYCYRDPR--TGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TEEEETTTEEEEECTT--TCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred cceecCCCeEEEEeec--CCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 5777788999887655 667889996 8888877766554444
No 5
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=59.68 E-value=19 Score=26.52 Aligned_cols=44 Identities=20% Similarity=0.367 Sum_probs=32.3
Q ss_pred EEECCC--CcEEEEEecCCCCeEEeeCCCC--CHHHHHHHHHHHHHHh
Q 026240 29 VRKRPW--GRYAAEIRDPGKKSRVWLGTFD--TAEEAARAYDAAAREF 72 (241)
Q Consensus 29 V~~~~~--GRW~A~I~~~~kkkri~LGtFd--T~EEAArAYD~AA~k~ 72 (241)
++-.+. ..|.-+.+..++.+++.||.|. |.+||...-+++...+
T Consensus 28 L~V~psG~K~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l 75 (88)
T 3jtz_A 28 LLVKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKML 75 (88)
T ss_dssp EEECTTSCEEEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred EEEecCCCEEEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence 344454 3598888887777889999996 5888887777666555
No 6
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=42.93 E-value=16 Score=25.45 Aligned_cols=33 Identities=15% Similarity=0.153 Sum_probs=22.6
Q ss_pred EEEEecCCCCeEEeeCCCCCHHHHHHHHHHHHH
Q 026240 38 AAEIRDPGKKSRVWLGTFDTAEEAARAYDAAAR 70 (241)
Q Consensus 38 ~A~I~~~~kkkri~LGtFdT~EEAArAYD~AA~ 70 (241)
.+.|...+.--|+++|-|.+.+||..+-++...
T Consensus 36 ~~~i~~~~~~yRV~vGpf~~~~~A~~~~~~L~~ 68 (79)
T 1x60_A 36 DSIVLLKDGLYKVQIGAFSSKDNADTLAARAKN 68 (79)
T ss_dssp CEEEEEETTEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred CeEEecCCcEEEEEECCcCCHHHHHHHHHHHHH
Confidence 344433223358999999999999988765544
No 7
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=41.78 E-value=22 Score=25.08 Aligned_cols=33 Identities=18% Similarity=0.214 Sum_probs=23.8
Q ss_pred EEEEecCCCCeEEeeCCCCCHHHHHHHHHHHHH
Q 026240 38 AAEIRDPGKKSRVWLGTFDTAEEAARAYDAAAR 70 (241)
Q Consensus 38 ~A~I~~~~kkkri~LGtFdT~EEAArAYD~AA~ 70 (241)
.+.|...+.--|+++|-|.+.+||..+-++...
T Consensus 36 ~a~i~~~~~~yRV~vGpf~s~~~A~~~~~~L~~ 68 (81)
T 1uta_A 36 DSKITTNNGWNRVVIGPVKGKENADSTLNRLKM 68 (81)
T ss_dssp CEEEEECSSSEEEEESSCBTTTHHHHHHHHHHH
T ss_pred CeEEEeCCcEEEEEECCcCCHHHHHHHHHHHHH
Confidence 455554334458999999999999988766544
No 8
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=40.70 E-value=47 Score=25.39 Aligned_cols=44 Identities=20% Similarity=0.272 Sum_probs=31.6
Q ss_pred EEECCCC--cEEEEEecCCCCeEEeeCCCC--CHHHHHHHHHHHHHHh
Q 026240 29 VRKRPWG--RYAAEIRDPGKKSRVWLGTFD--TAEEAARAYDAAAREF 72 (241)
Q Consensus 29 V~~~~~G--RW~A~I~~~~kkkri~LGtFd--T~EEAArAYD~AA~k~ 72 (241)
++-.+.| .|.-+.+..++.+++.||.|. |..||...-+.+...+
T Consensus 28 L~V~psG~K~w~~rYr~~GK~~~~~LG~yp~~SLa~AR~~a~~~r~~l 75 (108)
T 3ju0_A 28 LLVHPNGSKYWRLSYRFEKKQRLLALGVYPAVSLADARQRRDEAKKLL 75 (108)
T ss_dssp EEECTTSCEEEEEEEEETTEEEEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCEEEEEEEEEcCceEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 3444543 598888887777889999996 5788877776655555
No 9
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=24.81 E-value=1.1e+02 Score=23.93 Aligned_cols=36 Identities=19% Similarity=0.223 Sum_probs=28.4
Q ss_pred cEEEEEecCCCCeEEeeCCCCCHHHHHHHHHHHHHHhc
Q 026240 36 RYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAAREFR 73 (241)
Q Consensus 36 RW~A~I~~~~kkkri~LGtFdT~EEAArAYD~AA~k~~ 73 (241)
.|.|.|.. +..-+-++...+++.|..|...|+.+|=
T Consensus 79 ~wva~Vk~--G~ilfEi~g~~~~~~a~eAlr~a~~KlP 114 (118)
T 2ftc_I 79 HYVTPVKA--GRLVVEMGGRCEFEEVQGFLDQVAHKLP 114 (118)
T ss_pred EEEEEECC--CCEEEEEeccCCHHHHHHHHHHHHhhCC
Confidence 39999987 5545556666889999999999998873
No 10
>1b69_A Protein (integrase); integrase, DNA binding, transposition, complex, beta-sheet recognition; HET: DNA; NMR {Enterococcus faecalis} SCOP: d.10.1.1 PDB: 1tn9_A* 1bb8_A 2bb8_A
Probab=23.61 E-value=50 Score=23.93 Aligned_cols=29 Identities=24% Similarity=0.197 Sum_probs=21.3
Q ss_pred ceeeEEEECCCCcEEEEEecCCC-CeEEee
Q 026240 24 VHFRGVRKRPWGRYAAEIRDPGK-KSRVWL 52 (241)
Q Consensus 24 S~YRGV~~~~~GRW~A~I~~~~k-kkri~L 52 (241)
.-+.|+++++.|+|+.++.+..+ .+.+|-
T Consensus 10 ~L~~GesqR~dG~Y~yry~d~~Gkr~~vYs 39 (69)
T 1b69_A 10 ILKTGESQRKDGRYLYKYIDSFGEPQFVYS 39 (69)
T ss_dssp CCCTTEEECSSSCEEEEEECTTSSEEEEEE
T ss_pred ccCCCeEEccCCcEEEEEEcCCCCEEEEEe
Confidence 34678999999999999998633 344443
Done!