BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026242
(241 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EVT|A Chain A, Crystal Structure Of D48v Mutant Of Human Glycolipid
Transfer Protein
pdb|3S0I|A Chain A, Crystal Structure Of D48v Mutant Of Human Glycolipid
Transfer Protein Complexed With 3-O-Sulfo
Galactosylceramide Containing Nervonoyl Acyl Chain
Length = 209
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 79/185 (42%), Gaps = 15/185 (8%)
Query: 72 FCEACSLVSVLFNCLG----LAFKFARMEYVTKVQNLVEASKA-YDNLHDILDMDIANDT 126
F EA S + F+CLG K +TK++ + + + A + L +IL+++
Sbjct: 23 FLEAVSHLPPFFDCLGSPVFTPIKAVISGNITKIKAVYDTNPAKFRTLQNILEVEKEMYG 82
Query: 127 VKAPG-SHSRNLRRVRQGLDLVRALFEQFL-----STNDYSLKEAASTAYAQVCAPYHSW 180
+ P + L +++GL ++ + + ++ A+ AY YH W
Sbjct: 83 AEWPKVGATLALMWLKRGLRFIQVFLQSICDGERDENHPNLIRVNATKAYEMALKKYHGW 142
Query: 181 TVRAAVSAGMYTLPTREQLLLRL----NENDQSAGKKMRRYINASVPVIEYIDELFISRN 236
V+ A +Y P + L L N ++ +K+R ++ I+ I E++ N
Sbjct: 143 IVQKIFQAALYAAPYKSDFLKALSKGQNVTEEECLEKIRLFLVNYTATIDVIYEMYTQMN 202
Query: 237 IKLNW 241
+LN+
Sbjct: 203 AELNY 207
>pdb|1SWX|A Chain A, Crystal Structure Of A Human Glycolipid Transfer Protein
In Apo-Form
pdb|1SX6|A Chain A, Crystal Structure Of Human Glycolipid Transfer Protein In
Lactosylceramide-Bound Form
pdb|2EUK|A Chain A, Crystal Structure Of Human Glycolipid Transfer Protein
Complexed With 24:1 Galactosylceramide
pdb|2EUM|A Chain A, Crystal Structure Of Human Glycolipid Transfer Protein
Complexed With 8:0 Lactosylceramide
pdb|2EVD|A Chain A, Crystal Structure Of Human Glycolipid Transfer Protein
Complexed With 12:0 Lactosylceramide
pdb|2EVL|A Chain A, Crystal Structure Of Human Glycolipid Transfer Protein
Complexed With 18:2 Galactosylceramide
pdb|2EVS|A Chain A, Crystal Structure Of Human Glycolipid Transfer Protein
Complexed With N-Hexyl-Beta-D-Glucoside
pdb|2EVS|E Chain E, Crystal Structure Of Human Glycolipid Transfer Protein
Complexed With N-Hexyl-Beta-D-Glucoside
pdb|3RWV|A Chain A, Crystal Structure Of Apo-Form Of Human Glycolipid Transfer
Protein At 1.5 A Resolution
pdb|3RWV|B Chain B, Crystal Structure Of Apo-Form Of Human Glycolipid Transfer
Protein At 1.5 A Resolution
pdb|3RZN|A Chain A, Crystal Structure Of Human Glycolipid Transfer Protein
Complexed With 3-O-Sulfo-Galactosylceramide Containing
Nervonoyl Acyl Chain (24:1)
pdb|3S0K|A Chain A, Crystal Structure Of Human Glycolipid Transfer Protein
Complexed With Glucosylceramide Containing Oleoyl Acyl
Chain (18:1)
Length = 209
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 81/185 (43%), Gaps = 15/185 (8%)
Query: 72 FCEACSLVSVLFNCLG-LAFKFARMEY---VTKVQNLVEASKA-YDNLHDILDMDIANDT 126
F EA S + F+CLG F + + +TK++ + + + A + L +IL+++
Sbjct: 23 FLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPAKFRTLQNILEVEKEMYG 82
Query: 127 VKAPG-SHSRNLRRVRQGLDLVRALFEQFL-----STNDYSLKEAASTAYAQVCAPYHSW 180
+ P + L +++GL ++ + + ++ A+ AY YH W
Sbjct: 83 AEWPKVGATLALMWLKRGLRFIQVFLQSICDGERDENHPNLIRVNATKAYEMALKKYHGW 142
Query: 181 TVRAAVSAGMYTLPTREQLLLRL----NENDQSAGKKMRRYINASVPVIEYIDELFISRN 236
V+ A +Y P + L L N ++ +K+R ++ I+ I E++ N
Sbjct: 143 IVQKIFQAALYAAPYKSDFLKALSKGQNVTEEECLEKIRLFLVNYTATIDVIYEMYTQMN 202
Query: 237 IKLNW 241
+LN+
Sbjct: 203 AELNY 207
>pdb|3RIC|A Chain A, Crystal Structure Of D48v||a47d Mutant Of Human Glycolipid
Transfer Protein Complexed With
3-O-Sulfo-Galactosylceramide Containing Nervonoyl Acyl
Chain (24:1)
Length = 209
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 79/185 (42%), Gaps = 15/185 (8%)
Query: 72 FCEACSLVSVLFNCLG----LAFKFARMEYVTKVQNLVEASKA-YDNLHDILDMDIANDT 126
F EA S + F+CLG K +TK++ + + + A + L +IL+++
Sbjct: 23 FLEAVSHLPPFFDCLGSPVFTPIKDVISGNITKIKAVYDTNPAKFRTLQNILEVEKEMYG 82
Query: 127 VKAPG-SHSRNLRRVRQGLDLVRALFEQFL-----STNDYSLKEAASTAYAQVCAPYHSW 180
+ P + L +++GL ++ + + ++ A+ AY YH W
Sbjct: 83 AEWPKVGATLALMWLKRGLRFIQVFLQSICDGERDENHPNLIRVNATKAYEMALKKYHGW 142
Query: 181 TVRAAVSAGMYTLPTREQLLLRL----NENDQSAGKKMRRYINASVPVIEYIDELFISRN 236
V+ A +Y P + L L N ++ +K+R ++ I+ I E++ N
Sbjct: 143 IVQKIFQAALYAAPYKSDFLKALSKGQNVTEEECLEKIRLFLVNYTATIDVIYEMYTQMN 202
Query: 237 IKLNW 241
+LN+
Sbjct: 203 AELNY 207
>pdb|1WBE|A Chain A, X-Ray Structure Of Bovine Gltp
Length = 209
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/185 (21%), Positives = 80/185 (43%), Gaps = 15/185 (8%)
Query: 72 FCEACSLVSVLFNCLG-LAFKFARMEY---VTKVQNLVEASKA-YDNLHDILDMDIANDT 126
F EA S + F+CLG F + + +TK++ + + + + L +IL+++
Sbjct: 23 FLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPTKFRTLQNILEVEKEMYG 82
Query: 127 VKAPG-SHSRNLRRVRQGLDLVRALFEQFL-----STNDYSLKEAASTAYAQVCAPYHSW 180
+ P + L +++GL ++ + + ++ A+ AY YH W
Sbjct: 83 AEWPKVGATLALMWLKRGLRFIQVFLQSICDGERDENHPNLIRVNATKAYEMALKKYHGW 142
Query: 181 TVRAAVSAGMYTLPTREQLLLRL----NENDQSAGKKMRRYINASVPVIEYIDELFISRN 236
V+ A +Y P + L L N ++ +K+R ++ I+ I E++ N
Sbjct: 143 IVQKIFQAALYAAPYKSDFLKALSKGQNVTEEECLEKVRLFLVNYTATIDVIYEMYTRMN 202
Query: 237 IKLNW 241
+LN+
Sbjct: 203 AELNY 207
>pdb|1TFJ|A Chain A, Crystal Structure Of Bovine Glycolipid Transfer Protein In
Complex With A Fatty Acid
Length = 219
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/185 (21%), Positives = 80/185 (43%), Gaps = 15/185 (8%)
Query: 72 FCEACSLVSVLFNCLG-LAFKFARMEY---VTKVQNLVEASKA-YDNLHDILDMDIANDT 126
F EA S + F+CLG F + + +TK++ + + + + L +IL+++
Sbjct: 33 FLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPTKFRTLQNILEVEKEMYG 92
Query: 127 VKAPG-SHSRNLRRVRQGLDLVRALFEQFL-----STNDYSLKEAASTAYAQVCAPYHSW 180
+ P + L +++GL ++ + + ++ A+ AY YH W
Sbjct: 93 AEWPKVGATLALMWLKRGLRFIQVFLQSICDGERDENHPNLIRVNATKAYEMALKKYHGW 152
Query: 181 TVRAAVSAGMYTLPTREQLLLRL----NENDQSAGKKMRRYINASVPVIEYIDELFISRN 236
V+ A +Y P + L L N ++ +K+R ++ I+ I E++ N
Sbjct: 153 IVQKIFQAALYAAPYKSDFLKALSKGQNVTEEECLEKVRLFLVNYTATIDVIYEMYTRMN 212
Query: 237 IKLNW 241
+LN+
Sbjct: 213 AELNY 217
>pdb|2BV7|A Chain A, Crystal Structure Of Gltp With Bound Gm3
Length = 208
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/185 (21%), Positives = 80/185 (43%), Gaps = 15/185 (8%)
Query: 72 FCEACSLVSVLFNCLG-LAFKFARMEY---VTKVQNLVEASKA-YDNLHDILDMDIANDT 126
F EA S + F+CLG F + + +TK++ + + + + L +IL+++
Sbjct: 22 FLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPTKFRTLQNILEVEKEMYG 81
Query: 127 VKAPG-SHSRNLRRVRQGLDLVRALFEQFL-----STNDYSLKEAASTAYAQVCAPYHSW 180
+ P + L +++GL ++ + + ++ A+ AY YH W
Sbjct: 82 AEWPKVGATLALMWLKRGLRFIQVFLQSICDGERDENHPNLIRVNATKAYEMALKKYHGW 141
Query: 181 TVRAAVSAGMYTLPTREQLLLRL----NENDQSAGKKMRRYINASVPVIEYIDELFISRN 236
V+ A +Y P + L L N ++ +K+R ++ I+ I E++ N
Sbjct: 142 IVQKIFQAALYAAPYKSDFLKALSKGQNVTEEECLEKVRLFLVNYTATIDVIYEMYTRMN 201
Query: 237 IKLNW 241
+LN+
Sbjct: 202 AELNY 206
>pdb|3KV0|A Chain A, Crystal Structure Of Het-C2: A Fungal Glycolipid Transfer
Pr (Gltp)
Length = 209
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 68/157 (43%), Gaps = 16/157 (10%)
Query: 72 FCEACSLVSVLFNCLG-LAFKFARMEYVTKVQN----LVEASKAYDNLHDILDMDIANDT 126
F EA ++ +F+ LG +AF + + V+ ++ A N+ D+ + N+
Sbjct: 42 FLEAAESLTTMFDVLGSIAFSPVXTDMLGNVEXIRXRMLAAPLESQNIQDL----VRNEL 97
Query: 127 VKAPGSHSRNLRRVRQGLDLVRALFEQFLSTNDYSLKEAAST---AYAQVCAPYHSWTVR 183
+ + L + +GL+ LS N S +E A + +Y P+HS+ V
Sbjct: 98 XTXSHTATEGLLWLVRGLEFTCIA----LSXNIGSTEELADSFRGSYRVTLXPHHSFLVX 153
Query: 184 AAVSAGMYTLPTREQLLLRLNENDQSAGKKMRRYINA 220
SA M P R L +++Q +++R Y+ A
Sbjct: 154 PIFSAAMSACPYRXDFYAXLGDDEQXVQEELREYLVA 190
>pdb|2I3F|A Chain A, Crystal Structure Of A Glycolipid Transfer-Like Protein
From Galdieria Sulphuraria
pdb|2I3F|B Chain B, Crystal Structure Of A Glycolipid Transfer-Like Protein
From Galdieria Sulphuraria
pdb|2Q52|A Chain A, Ensemble Refinement Of The Crystal Structure Of A
Glycolipid Transfer- Like Protein From Galdieria
Sulphuraria
pdb|2Q52|B Chain B, Ensemble Refinement Of The Crystal Structure Of A
Glycolipid Transfer- Like Protein From Galdieria
Sulphuraria
Length = 224
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/150 (18%), Positives = 66/150 (44%), Gaps = 4/150 (2%)
Query: 69 LDVFCEACSLVSVLFNCLGLAFKFARMEYVTKVQNLVEASKAYDNLHDILDMDIANDTVK 128
L+ F A V + + G F+ + + ++ L A++ + + ++ IA ++
Sbjct: 32 LEPFLTAAKEVLRVVDAFGSGFRIVKNDIAGNIKKLYRANQTV-HAETLQELIIAENS-- 88
Query: 129 APGSHSRNLRRVRQGLDLVRALFEQFLSTNDYSLKEAASTAYAQVCAPYHSWTVRAAVSA 188
G + L +++ + + + + T D SL++ + AY P HS ++
Sbjct: 89 PDGLATVALLWLKRAFQFIASFLRRLVVT-DKSLEQCVTEAYNCTLRPCHSAVIQKVFWG 147
Query: 189 GMYTLPTREQLLLRLNENDQSAGKKMRRYI 218
G+ P+RE+ +L+ + A K+ ++
Sbjct: 148 GVKLAPSRERFYRKLHPDLNIAKAKIEEFL 177
>pdb|3F69|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Pknb
Mutant Kinase Domain In Complex With Kt5720
pdb|3F69|B Chain B, Crystal Structure Of The Mycobacterium Tuberculosis Pknb
Mutant Kinase Domain In Complex With Kt5720
Length = 311
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
Query: 26 MADFSTARKTA----TMASLSLIVGSFEELAKLLNSRNGRGCKTDLRLDVFCEACSLVSV 81
+ DF AR A ++ + ++G+ A+ L+ RG D R DV+ C L V
Sbjct: 157 VVDFGIARAIADSGNSVXQTAAVIGT----AQYLSPEQARGDSVDARSDVYSLGCVLYEV 212
Query: 82 L 82
L
Sbjct: 213 L 213
>pdb|1O6Y|A Chain A, Catalytic Domain Of Pknb Kinase From Mycobacterium
Tuberculosis
pdb|2FUM|A Chain A, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|B Chain B, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|C Chain C, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|D Chain D, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
Length = 299
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
Query: 28 DFSTARKTA----TMASLSLIVGSFEELAKLLNSRNGRGCKTDLRLDVFCEACSLVSVL 82
DF AR A ++ + ++G+ A+ L+ RG D R DV+ C L VL
Sbjct: 176 DFGIARAIADSGNSVTQTAAVIGT----AQYLSPEQARGDSVDARSDVYSLGCVLYEVL 230
>pdb|3ORI|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|B Chain B, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|C Chain C, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|D Chain D, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORK|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 2)
pdb|3ORL|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 3)
pdb|3ORO|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 4)
pdb|3ORP|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 5)
pdb|3ORT|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 6)
Length = 311
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
Query: 28 DFSTARKTA----TMASLSLIVGSFEELAKLLNSRNGRGCKTDLRLDVFCEACSLVSVL 82
DF AR A ++ + ++G+ A+ L+ RG D R DV+ C L VL
Sbjct: 159 DFGIARAIADSGNSVTQTAAVIGT----AQYLSPEQARGDSVDARSDVYSLGCVLYEVL 213
>pdb|3F61|A Chain A, Crystal Structure Of M. Tuberculosis Pknb
Leu33aspVAL222ASP DOUBLE MUTANT IN COMPLEX WITH ADP
Length = 311
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
Query: 28 DFSTARKTA----TMASLSLIVGSFEELAKLLNSRNGRGCKTDLRLDVFCEACSLVSVL 82
DF AR A ++ + ++G+ A+ L+ RG D R DV+ C L VL
Sbjct: 159 DFGIARAIADSGNSVTQTAAVIGT----AQYLSPEQARGDSVDARSDVYSLGCVLYEVL 213
>pdb|1MRU|A Chain A, Intracellular SerTHR PROTEIN KINASE DOMAIN OF
Mycobacterium Tuberculosis Pknb.
pdb|1MRU|B Chain B, Intracellular SerTHR PROTEIN KINASE DOMAIN OF
Mycobacterium Tuberculosis Pknb
Length = 311
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
Query: 28 DFSTARKTA----TMASLSLIVGSFEELAKLLNSRNGRGCKTDLRLDVFCEACSLVSVL 82
DF AR A ++ + ++G+ A+ L+ RG D R DV+ C L VL
Sbjct: 159 DFGIARAIADSGNSVTQTAAVIGT----AQYLSPEQARGDSVDARSDVYSLGCVLYEVL 213
>pdb|3ORM|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain D76a Mutant
Length = 311
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
Query: 28 DFSTARKTA----TMASLSLIVGSFEELAKLLNSRNGRGCKTDLRLDVFCEACSLVSVL 82
DF AR A ++ + ++G+ A+ L+ RG D R DV+ C L VL
Sbjct: 159 DFGIARAIADSGNSVTQTAAVIGT----AQYLSPEQARGDSVDARSDVYSLGCVLYEVL 213
>pdb|2B9B|A Chain A, Structure Of The Parainfluenza Virus 5 F Protein In Its
Metastable, Pre-Fusion Conformation
pdb|2B9B|B Chain B, Structure Of The Parainfluenza Virus 5 F Protein In Its
Metastable, Pre-Fusion Conformation
pdb|2B9B|C Chain C, Structure Of The Parainfluenza Virus 5 F Protein In Its
Metastable, Pre-Fusion Conformation
Length = 497
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 10 TINMDKVECRFKDARAMADFSTA--RKTATMASLSLIVGSF 48
TI + V CR+ DA+ ++D + A + T + S +VGSF
Sbjct: 304 TITPNTVYCRYNDAQVLSDDTMACLQGNLTRCTFSPVVGSF 344
>pdb|4GIP|D Chain D, Structure Of The Cleavage-Activated Prefusion Form Of The
Parainfluenza Virus 5 (Piv5) Fusion Protein
pdb|4GIP|E Chain E, Structure Of The Cleavage-Activated Prefusion Form Of The
Parainfluenza Virus 5 (Piv5) Fusion Protein
pdb|4GIP|F Chain F, Structure Of The Cleavage-Activated Prefusion Form Of The
Parainfluenza Virus 5 (Piv5) Fusion Protein
Length = 409
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 10 TINMDKVECRFKDARAMADFSTA--RKTATMASLSLIVGSF 48
TI + V CR+ DA+ ++D + A + T + S +VGSF
Sbjct: 223 TITPNTVYCRYNDAQVLSDDTMACLQGNLTRCTFSPVVGSF 263
>pdb|4EWF|A Chain A, The Crystal Structure Of Beta-Lactamase From Sphaerobacter
Thermophilus Dsm 20745
pdb|4EWF|B Chain B, The Crystal Structure Of Beta-Lactamase From Sphaerobacter
Thermophilus Dsm 20745
pdb|4EWF|C Chain C, The Crystal Structure Of Beta-Lactamase From Sphaerobacter
Thermophilus Dsm 20745
pdb|4EWF|D Chain D, The Crystal Structure Of Beta-Lactamase From Sphaerobacter
Thermophilus Dsm 20745
Length = 275
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 87 GLAFKFARMEYVTKVQNLVEASKAYDNLHDILDMDIANDTVKAPGSHSRNLRRVRQGLDL 146
GL + Y+T + + A + L D++ +D ND + + G NL R +G
Sbjct: 97 GLELTLEDLVYLTIS---ISDNTATNLLIDLVGLDAVNDVIASLGXRDSNLSRKXKGRPA 153
Query: 147 VRALFEQFLSTNDYSL 162
+ E + + +DY+L
Sbjct: 154 LPDEPENWATPDDYAL 169
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.132 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,152,573
Number of Sequences: 62578
Number of extensions: 213770
Number of successful extensions: 501
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 480
Number of HSP's gapped (non-prelim): 23
length of query: 241
length of database: 14,973,337
effective HSP length: 96
effective length of query: 145
effective length of database: 8,965,849
effective search space: 1300048105
effective search space used: 1300048105
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)