Query 026242
Match_columns 241
No_of_seqs 165 out of 426
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 05:28:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026242.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026242hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4189 Uncharacterized conser 100.0 2.5E-49 5.4E-54 334.5 20.9 200 37-241 6-209 (209)
2 PF08718 GLTP: Glycolipid tran 100.0 1.4E-48 3.1E-53 323.0 11.8 141 66-206 2-148 (149)
3 KOG3221 Glycolipid transfer pr 100.0 9.6E-47 2.1E-51 319.5 16.6 173 67-240 18-197 (199)
4 PF13496 DUF4120: Domain of un 36.7 11 0.00023 28.8 -0.2 13 170-182 81-93 (95)
5 PF10400 Vir_act_alpha_C: Viru 32.0 1.6E+02 0.0035 21.1 5.6 41 194-234 2-46 (90)
6 PF04711 ApoA-II: Apolipoprote 29.8 2.3E+02 0.005 20.9 5.9 56 40-100 14-71 (76)
7 PF00036 EF-hand_1: EF hand; 28.4 54 0.0012 19.4 2.0 28 44-79 2-29 (29)
8 PF13959 DUF4217: Domain of un 26.3 40 0.00087 23.7 1.4 40 148-188 3-43 (65)
9 KOG2564 Predicted acetyltransf 26.1 76 0.0017 29.7 3.4 113 15-134 100-226 (343)
10 COG3636 Predicted transcriptio 25.7 3.3E+02 0.0071 21.3 6.4 56 142-206 18-73 (100)
11 PF10815 ComZ: ComZ; InterPro 25.0 2.3E+02 0.005 19.8 4.8 20 185-204 6-25 (56)
12 PF11553 DUF3231: Protein of u 24.7 1.5E+02 0.0032 24.3 4.7 35 206-240 44-78 (166)
13 COG0598 CorA Mg2+ and Co2+ tra 23.6 5.7E+02 0.012 23.3 10.5 87 74-173 136-229 (322)
14 PF09409 PUB: PUB domain; Int 23.5 1.2E+02 0.0025 22.3 3.5 54 140-194 6-62 (87)
15 PF14516 AAA_35: AAA-like doma 22.8 1.8E+02 0.0039 26.8 5.3 54 166-221 222-275 (331)
16 KOG1924 RhoA GTPase effector D 22.6 9.4E+02 0.02 25.9 10.6 157 68-233 763-967 (1102)
17 PRK14161 heat shock protein Gr 22.1 2E+02 0.0043 24.6 5.0 53 186-238 69-121 (178)
No 1
>KOG4189 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.5e-49 Score=334.46 Aligned_cols=200 Identities=35% Similarity=0.592 Sum_probs=186.8
Q ss_pred cCCchHHHHHHHHHHHHHhhccCCCCcccCCchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHH-cccccccHH
Q 026242 37 TMASLSLIVGSFEELAKLLNSRNGRGCKTDLRLDVFCEACSLVSVLFNCLGLAFKFARMEYVTKVQNLVE-ASKAYDNLH 115 (241)
Q Consensus 37 ~~~~l~~v~~~F~~~~~~~~~~~~~~~~~~I~t~~FL~A~~~l~~lfd~LG~~F~fv~~Dv~~nI~~l~~-~~~~~~TL~ 115 (241)
-.+++.++..+|+.+...+.+++++ |++.+|+.||+++++||++||++|+||.+|+..||++|.+ .++...|+.
T Consensus 6 ~~~~~~~i~~~~~~i~~~v~~e~~e-----V~L~~f~~a~e~v~~~f~~lG~iF~Fve~Dv~aKid~L~~l~ssd~et~r 80 (209)
T KOG4189|consen 6 QLGPLPKILQAFKTIEKSVIEEDNE-----VDLDQFLLAYEEVCKFFGCLGTIFSFVEKDVRAKIDDLVELRSSDPETYR 80 (209)
T ss_pred hccchHHHHHHHHHHHHHhcCCCCc-----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHH
Confidence 3467888999999998888777666 9999999999999999999999999999999999999988 445588888
Q ss_pred HHHHHHHhcCCCCCCC--CcchhHHHHhhHHHHHHHHHHHHhcCC-CccHHHHHHHHHHHhhcCCCcHhHHHHHHHHhhc
Q 026242 116 DILDMDIANDTVKAPG--SHSRNLRRVRQGLDLVRALFEQFLSTN-DYSLKEAASTAYAQVCAPYHSWTVRAAVSAGMYT 192 (241)
Q Consensus 116 ~mv~~E~~~~~~~~~~--S~tr~LLwL~RaL~Fi~~fl~~l~~~~-~~~l~~~a~~AY~~TL~~yH~w~VR~~f~~Am~a 192 (241)
.|++.+.++...++.+ ||||+||||+|||+|+..||.++..++ +++++++|++||++||+|||||+||+++++|||+
T Consensus 81 tild~~~e~~~~~~~G~~Sgtr~Llrl~R~LefV~efl~~i~as~nD~s~~diakesYd~~lakhHsW~IRtAV~~amYt 160 (209)
T KOG4189|consen 81 TILDLDTEESEVGTIGNQSGTRNLLRLNRALEFVIEFLDQIFASTNDESLKDIAKESYDKTLAKHHSWAIRTAVAAAMYT 160 (209)
T ss_pred HHHHHHHHHhHhcccCccccchHHHHHHhhHHHHHHHHHHHHcCCCcchhhHHHHHHHHHhhhccccHHHHHHHHHHHHh
Confidence 8999998888777777 999999999999999999999999875 7899999999999999999999999999999999
Q ss_pred CCCHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 026242 193 LPTREQLLLRLNENDQSAGKKMRRYINASVPVIEYIDELFISRNIKLNW 241 (241)
Q Consensus 193 lP~R~~fl~~l~~~e~~~~~~l~~~~~al~~v~~~i~~~y~~~~l~~~~ 241 (241)
+|+|.+|+.+|+++.+.+.+.|+.|....++++.+++.+|+.+++..||
T Consensus 161 LPTR~~lL~~Lk~d~~~~~~~~~~~~~~~r~ii~~~~~l~~~~~l~~~~ 209 (209)
T KOG4189|consen 161 LPTRPELLCRLKEDMDAANQNMQSYNRDSRPIIRRVDKLYELFELTDDW 209 (209)
T ss_pred CCCcHHHHHHHHhHHHHHHHHHHHHHHccChHHHHHhHHHHHhccccCC
Confidence 9999999999999999999999999999999999999999999999999
No 2
>PF08718 GLTP: Glycolipid transfer protein (GLTP); InterPro: IPR014830 Glycolipid transfer protein (GLTP) is a cytosolic protein that catalyses the intermembrane transfer of glycolipids such as glycosphingolipids, glyceroglycolipids, and possibly glucosylceramides, but not of phospholipids. The GLTP protein consists of a single domain with a multi-helical structure consisting of two layers of orthogonally packed helices [, ]. The GLTP domain is also found in trans-Golgi network proteins involved in Golgi-to-cell-surface membrane traffic [].; GO: 0017089 glycolipid transporter activity, 0051861 glycolipid binding, 0046836 glycolipid transport, 0005737 cytoplasm; PDB: 2BV7_A 1TFJ_A 1WBE_A 3KV0_A 3RWV_B 2EVD_A 2EUK_A 3RZN_A 2EVL_A 3S0K_A ....
Probab=100.00 E-value=1.4e-48 Score=323.00 Aligned_cols=141 Identities=33% Similarity=0.603 Sum_probs=130.1
Q ss_pred CCchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHH-----cccccccHHHHHHHHHhcCCCCCCCCcchhHHHH
Q 026242 66 DLRLDVFCEACSLVSVLFNCLGLAFKFARMEYVTKVQNLVE-----ASKAYDNLHDILDMDIANDTVKAPGSHSRNLRRV 140 (241)
Q Consensus 66 ~I~t~~FL~A~~~l~~lfd~LG~~F~fv~~Dv~~nI~~l~~-----~~~~~~TL~~mv~~E~~~~~~~~~~S~tr~LLwL 140 (241)
+|++++||+||++|++|||.||++|+||++||.+||++|+. +|++|.||++||++|++.|++++++||+|+||||
T Consensus 2 ~i~~~~fl~a~~~l~~~~~~lG~~f~~v~~Dv~~ni~~l~~~~~~~~~~~~~tl~~~v~~E~~~~~~~~~~s~s~~LLwL 81 (149)
T PF08718_consen 2 DIDTEPFLEACRELVKFFDKLGTVFSFVKSDVQGNIKKLRKAYQEEDPEKYKTLESMVDYEVENGTHKKKGSGSRTLLWL 81 (149)
T ss_dssp EEBHHHHHHHHTTSHHHHCCSSGGGHHHHHHHHHHHHHHHHHH-HHSTTTTSBHHHHHHHHHHHHGGGTSSHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcCChhhhccHHHHHHHHHHHhcccccccHHHHHHHH
Confidence 39999999999999999999999999999999999999976 4678999999999999999988888999999999
Q ss_pred hhHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHhhcCCCcHhHHHHHHHHhhcCCCHHHHHHHhccC
Q 026242 141 RQGLDLVRALFEQFLSTNDY-SLKEAASTAYAQVCAPYHSWTVRAAVSAGMYTLPTREQLLLRLNEN 206 (241)
Q Consensus 141 ~RaL~Fi~~fl~~l~~~~~~-~l~~~a~~AY~~TL~~yH~w~VR~~f~~Am~alP~R~~fl~~l~~~ 206 (241)
||||+|+..||+++.+++++ +++++|++||++||+|||||+||++|++||+++|+|++|+++++++
T Consensus 82 ~RaL~Fi~~~l~~l~~~~~~~~~~~~~~~AY~~tL~~yH~w~vr~~~~~a~~~~P~R~~fl~~l~~~ 148 (149)
T PF08718_consen 82 HRALEFIVAFLENLLESPDDEKLSDAAREAYDKTLAPYHGWIVRKAFKLALKALPSRSDFLKKLGGN 148 (149)
T ss_dssp HHHHHHHHHHHHHHHTS--BTBHHHHHHHHHHHHTGGGB-HHHHHHHHHHHHT--BHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHhCC
Confidence 99999999999999998755 5999999999999999999999999999999999999999999875
No 3
>KOG3221 consensus Glycolipid transfer protein [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.6e-47 Score=319.48 Aligned_cols=173 Identities=18% Similarity=0.372 Sum_probs=165.3
Q ss_pred CchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHH----cccccccHHHHHHHHHhcCCCCCCCCcchhHHHHhh
Q 026242 67 LRLDVFCEACSLVSVLFNCLGLAFKFARMEYVTKVQNLVE----ASKAYDNLHDILDMDIANDTVKAPGSHSRNLRRVRQ 142 (241)
Q Consensus 67 I~t~~FL~A~~~l~~lfd~LG~~F~fv~~Dv~~nI~~l~~----~~~~~~TL~~mv~~E~~~~~~~~~~S~tr~LLwL~R 142 (241)
|+|.+||+||.+|+||+|+||.+|+||++||+|||+++++ +++.+.|||.+|..|++..... ++|||++||||+|
T Consensus 18 i~T~~FL~ac~~i~pvid~lG~~ftpVk~Di~gNI~kv~~~y~~d~~k~~~Lq~~i~~eie~~~a~-~~sat~aLLWLkR 96 (199)
T KOG3221|consen 18 IETGPFLEACKHIVPVIDKLGAVFTPVKSDISGNITKVKKVYDTDKEKFKYLQKIVKVEIETDIAE-KVSATLALLWLKR 96 (199)
T ss_pred CccHHHHHHHhhhhhHHHHhhhhhHhHHHHhhccHHHHHHHHhcChHHHHHHHHHHHHHHHHhhcc-cchhhHHHHHHHh
Confidence 9999999999999999999999999999999999999986 6899999999999999998777 7899999999999
Q ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHHHHHhhcCCCcHhHHHHHHHHhhcCCCHHHHHHHhc---cChHHHHHHHHHHHH
Q 026242 143 GLDLVRALFEQFLSTNDYSLKEAASTAYAQVCAPYHSWTVRAAVSAGMYTLPTREQLLLRLN---ENDQSAGKKMRRYIN 219 (241)
Q Consensus 143 aL~Fi~~fl~~l~~~~~~~l~~~a~~AY~~TL~~yH~w~VR~~f~~Am~alP~R~~fl~~l~---~~e~~~~~~l~~~~~ 219 (241)
||+|+..||+++.++.+..+..++.+||+.||+|||||++|++|++|++++|+|++|++.++ ++.++..++++.++.
T Consensus 97 gldF~~~~l~~l~~~~~~~l~~av~daY~kTLK~~HGwI~q~~FkvaLklvP~r~~Fl~als~~d~t~~~~~edi~~fl~ 176 (199)
T KOG3221|consen 97 GLDFTLAFLQELVNGESDCLIQAVADAYEKTLKKYHGWIVQSTFKVALKLVPDRKTFLKALSAGDETYDECIEDITSFLS 176 (199)
T ss_pred HHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCcHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 99999999999999887779999999999999999999999999999999999999999996 456788999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCC
Q 026242 220 ASVPVIEYIDELFISRNIKLN 240 (241)
Q Consensus 220 al~~v~~~i~~~y~~~~l~~~ 240 (241)
.+.+.++.|..+|+++|++.+
T Consensus 177 ~~~~~L~~i~~~l~~~~ld~~ 197 (199)
T KOG3221|consen 177 LLTPILKEIYFVLEQYGLDDL 197 (199)
T ss_pred HHHhhHHHHHHHHHHhccccc
Confidence 999999999999999999864
No 4
>PF13496 DUF4120: Domain of unknown function (DUF4120)
Probab=36.68 E-value=11 Score=28.78 Aligned_cols=13 Identities=31% Similarity=1.140 Sum_probs=10.4
Q ss_pred HHHhhcCCCcHhH
Q 026242 170 YAQVCAPYHSWTV 182 (241)
Q Consensus 170 Y~~TL~~yH~w~V 182 (241)
+.-++.|+|||.|
T Consensus 81 fav~~~pfhgw~i 93 (95)
T PF13496_consen 81 FAVMLGPFHGWSI 93 (95)
T ss_pred eEEEecCcccccc
Confidence 4467899999976
No 5
>PF10400 Vir_act_alpha_C: Virulence activator alpha C-term; InterPro: IPR018309 Phenolic acids, also called substituted hydroxycinnamic acids, are abundant in the plant kingdom because they are involved in the structure of plant cell walls and are present in some vacuoles. In plant-soil ecosystems they are released as free acids by hemicellulases produced by several fungi and bacteria. Of these weak acids, the most abundant are p-coumaric, ferulic, and caffeic acids, considered to be natural toxins that inhibit the growth of microorganisms, especially at low pHs. In spite of this chemical stress, some bacteria can use phenolic acids as a sole source of carbon. For other microorganisms, these compounds induce a specific response by which the organism adapts to its environment. The ubiquitous lactic acid bacterium Lactobacillus plantarum exhibits an inducible phenolic acid decarboxylase (PAD) activity which converts these substrates into less-toxic vinyl phenol derivatives. PadR acts as a repressor of padA gene expression in the phenolic acid stress response []. This entry represents the C-terminal domain.; PDB: 1YG2_A.
Probab=31.97 E-value=1.6e+02 Score=21.11 Aligned_cols=41 Identities=17% Similarity=0.211 Sum_probs=29.1
Q ss_pred CCHHHHHHHhc----cChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026242 194 PTREQLLLRLN----ENDQSAGKKMRRYINASVPVIEYIDELFIS 234 (241)
Q Consensus 194 P~R~~fl~~l~----~~e~~~~~~l~~~~~al~~v~~~i~~~y~~ 234 (241)
|.|+.|+-++- .+.+.+...|++.....+..++.++.+...
T Consensus 2 ~~Rde~LlKlff~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~ 46 (90)
T PF10400_consen 2 PIRDEFLLKLFFGGHLDPEEAIELLEERREQHEERLAEYEEIEQE 46 (90)
T ss_dssp ----HHHHHHHGGGTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67999998874 256788889999998888888888877644
No 6
>PF04711 ApoA-II: Apolipoprotein A-II (ApoA-II); InterPro: IPR006801 Apolipoprotein A-II (ApoA-II) is the second major apolipoprotein of high density lipoprotein in human plasma. Mature ApoA-II is present as a dimer of two 77-amino acid chains joined by a disulphide bridge []. ApoA-II regulates many steps in HDL metabolism, and its role in coronary heart disease is unclear []. In bovine serum, the ApoA-II homologue is present in almost free form. Bovine ApoA-II shows antimicrobial activity against Escherichia coli and yeasts in phosphate buffered saline (PBS) [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1L6L_W 2OU1_E.
Probab=29.84 E-value=2.3e+02 Score=20.95 Aligned_cols=56 Identities=11% Similarity=0.053 Sum_probs=39.8
Q ss_pred chHHHHHHHHHHHHHhhccCCCCcccCCchHH-HHHHHHHHHHHHHhhh-hhhHHHHHHHHHh
Q 026242 40 SLSLIVGSFEELAKLLNSRNGRGCKTDLRLDV-FCEACSLVSVLFNCLG-LAFKFARMEYVTK 100 (241)
Q Consensus 40 ~l~~v~~~F~~~~~~~~~~~~~~~~~~I~t~~-FL~A~~~l~~lfd~LG-~~F~fv~~Dv~~n 100 (241)
.|..|.+-++++...+++++=. -.... |-+.-+.+.|+....| -.+.|..+=|.-+
T Consensus 14 Y~qt~TdYgKDL~Ekvk~pElq-----sQakaYfektqeQltPlvkKagtdl~nflS~~v~~~ 71 (76)
T PF04711_consen 14 YFQTVTDYGKDLVEKVKGPELQ-----SQAKAYFEKTQEQLTPLVKKAGTDLMNFLSSFVELK 71 (76)
T ss_dssp HHHHHHHHHHHHHHHHHSHHTS-----STCHHHHHHHHHHHHHHHHGGHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHH-----HHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHhhccc
Confidence 5778888899998777554222 23444 4556678999999999 5889987765543
No 7
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=28.40 E-value=54 Score=19.38 Aligned_cols=28 Identities=18% Similarity=0.338 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhhccCCCCcccCCchHHHHHHHHHH
Q 026242 44 IVGSFEELAKLLNSRNGRGCKTDLRLDVFCEACSLV 79 (241)
Q Consensus 44 v~~~F~~~~~~~~~~~~~~~~~~I~t~~FL~A~~~l 79 (241)
+...|+..-. ++++ .|+.++|..+++.+
T Consensus 2 ~~~~F~~~D~----d~dG----~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 2 LKEAFREFDK----DGDG----KIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHST----TSSS----EEEHHHHHHHHHHT
T ss_pred HHHHHHHHCC----CCCC----cCCHHHHHHHHHhC
Confidence 5667777754 3333 29999999988753
No 8
>PF13959 DUF4217: Domain of unknown function (DUF4217)
Probab=26.26 E-value=40 Score=23.74 Aligned_cols=40 Identities=23% Similarity=0.384 Sum_probs=31.0
Q ss_pred HHHHHHHhcCCCccHHHHHHHHHHHhhcCCCcH-hHHHHHHH
Q 026242 148 RALFEQFLSTNDYSLKEAASTAYAQVCAPYHSW-TVRAAVSA 188 (241)
Q Consensus 148 ~~fl~~l~~~~~~~l~~~a~~AY~~TL~~yH~w-~VR~~f~~ 188 (241)
+.-++.++.. +.++...|++||-.-++-|+.. -.|.+|.+
T Consensus 3 q~~l~~~~~~-d~~l~~lA~~Af~SyvraY~~~~~~k~iF~~ 43 (65)
T PF13959_consen 3 QQKLEKLVAK-DRELKELAQKAFVSYVRAYASHKELKDIFNV 43 (65)
T ss_pred HHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHhhhhhhCCc
Confidence 4456677664 4789999999999999999887 67776654
No 9
>KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=26.10 E-value=76 Score=29.71 Aligned_cols=113 Identities=19% Similarity=0.266 Sum_probs=64.7
Q ss_pred ccccchhhhhhhhhhhhhhhc----ccCCchHHHHHHHHHHHHHh-hccCCCCcccC----CchHHHHHHHHHHHHHHHh
Q 026242 15 KVECRFKDARAMADFSTARKT----ATMASLSLIVGSFEELAKLL-NSRNGRGCKTD----LRLDVFCEACSLVSVLFNC 85 (241)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~v~~~F~~~~~~~-~~~~~~~~~~~----I~t~~FL~A~~~l~~lfd~ 85 (241)
|++||+ .+ .|++.+-++ +-+-.++.+.+-|-++...+ ++..+..+.++ =.+..+..+...|-. .
T Consensus 100 ~~~~r~---~a-~DlRgHGeTk~~~e~dlS~eT~~KD~~~~i~~~fge~~~~iilVGHSmGGaIav~~a~~k~lps---l 172 (343)
T KOG2564|consen 100 KIRCRC---LA-LDLRGHGETKVENEDDLSLETMSKDFGAVIKELFGELPPQIILVGHSMGGAIAVHTAASKTLPS---L 172 (343)
T ss_pred hcceeE---EE-eeccccCccccCChhhcCHHHHHHHHHHHHHHHhccCCCceEEEeccccchhhhhhhhhhhchh---h
Confidence 567777 22 344443322 33355667777776665433 11112110000 013344554444444 4
Q ss_pred hh-hhhHHHH---HHHHHhHHH-HHHcccccccHHHHHHHHHhcCCCCCCCCcc
Q 026242 86 LG-LAFKFAR---MEYVTKVQN-LVEASKAYDNLHDILDMDIANDTVKAPGSHS 134 (241)
Q Consensus 86 LG-~~F~fv~---~Dv~~nI~~-l~~~~~~~~TL~~mv~~E~~~~~~~~~~S~t 134 (241)
+| .+...|. ++..+..+. |+..|+.++++++-|++-++.|..+...|+-
T Consensus 173 ~Gl~viDVVEgtAmeAL~~m~~fL~~rP~~F~Si~~Ai~W~v~sg~~Rn~~SAr 226 (343)
T KOG2564|consen 173 AGLVVIDVVEGTAMEALNSMQHFLRNRPKSFKSIEDAIEWHVRSGQLRNRDSAR 226 (343)
T ss_pred hceEEEEEechHHHHHHHHHHHHHhcCCccccchhhHHHHHhccccccccccce
Confidence 56 5666666 666666654 4558999999999999999999888766653
No 10
>COG3636 Predicted transcriptional regulator [Transcription]
Probab=25.67 E-value=3.3e+02 Score=21.30 Aligned_cols=56 Identities=21% Similarity=0.157 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhhcCCCcHhHHHHHHHHhhcCCCHHHHHHHhccC
Q 026242 142 QGLDLVRALFEQFLSTNDYSLKEAASTAYAQVCAPYHSWTVRAAVSAGMYTLPTREQLLLRLNEN 206 (241)
Q Consensus 142 RaL~Fi~~fl~~l~~~~~~~l~~~a~~AY~~TL~~yH~w~VR~~f~~Am~alP~R~~fl~~l~~~ 206 (241)
..=+++..+|.+++++.+..+=.++.-+-.. .|+..++|=++==+|+.+|+.|.++
T Consensus 18 ~~ee~ia~yL~~~le~~d~a~i~~alg~var---------~~GMsqvA~~aGlsRe~LYkaLS~~ 73 (100)
T COG3636 18 TDEEAIAAYLNAALEEGDPALIAAALGVVAR---------SRGMSQVARKAGLSREGLYKALSPG 73 (100)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------hcCHHHHHHHhCccHHHHHHHhCCC
Confidence 4568899999999987664443333322221 3667788888889999999999754
No 11
>PF10815 ComZ: ComZ; InterPro: IPR024558 ComZ, which contains a leucine zipper motif, negatively regulates transcription of the ComG operon [].
Probab=24.97 E-value=2.3e+02 Score=19.76 Aligned_cols=20 Identities=20% Similarity=0.194 Sum_probs=17.2
Q ss_pred HHHHHhhcCCCHHHHHHHhc
Q 026242 185 AVSAGMYTLPTREQLLLRLN 204 (241)
Q Consensus 185 ~f~~Am~alP~R~~fl~~l~ 204 (241)
-...||+.+|.-+.++.+-|
T Consensus 6 FmqIaMK~lPEak~~L~k~G 25 (56)
T PF10815_consen 6 FMQIAMKYLPEAKEELDKKG 25 (56)
T ss_pred HHHHHHHHhHHHHHHHHHcC
Confidence 35789999999999998876
No 12
>PF11553 DUF3231: Protein of unknown function (DUF3231); InterPro: IPR021617 This bacterial family of proteins has no known function. ; PDB: 2RBD_B.
Probab=24.67 E-value=1.5e+02 Score=24.32 Aligned_cols=35 Identities=20% Similarity=0.337 Sum_probs=27.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 026242 206 NDQSAGKKMRRYINASVPVIEYIDELFISRNIKLN 240 (241)
Q Consensus 206 ~e~~~~~~l~~~~~al~~v~~~i~~~y~~~~l~~~ 240 (241)
.+.++...|++.++.+.+.++.+++++.+.|+.++
T Consensus 44 ~D~dik~~l~~~~~~~~~~i~~l~~ll~~e~ip~P 78 (166)
T PF11553_consen 44 EDKDIKKLLKKGLDLSQKQIEQLEKLLKEEGIPVP 78 (166)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHTT----
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 45678899999999999999999999999998653
No 13
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=23.59 E-value=5.7e+02 Score=23.35 Aligned_cols=87 Identities=14% Similarity=0.179 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHH---cccccccHHHHHHHHHhcCCCCCCCCcchhHHHHhhHHHHHHHH
Q 026242 74 EACSLVSVLFNCLGLAFKFARMEYVTKVQNLVE---ASKAYDNLHDILDMDIANDTVKAPGSHSRNLRRVRQGLDLVRAL 150 (241)
Q Consensus 74 ~A~~~l~~lfd~LG~~F~fv~~Dv~~nI~~l~~---~~~~~~TL~~mv~~E~~~~~~~~~~S~tr~LLwL~RaL~Fi~~f 150 (241)
.+..-+..++|.+--.|.++-..+...++.+++ .......++.+...+ +.++.++|+|.=....
T Consensus 136 ~~~~l~~~lld~i~d~~~~~le~i~~~~~~ie~~l~~~~~~~~l~~l~~l~-------------~~l~~lr~~l~~~~~~ 202 (322)
T COG0598 136 GADELLYALLDAIVDNYFPVLEQIEDELEAIEDQLLASTTNEELERLGELR-------------RSLVYLRRALAPLRDV 202 (322)
T ss_pred CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHH-------------HHHHHHHHHHHhHHHH
Confidence 344556678888888888999999999998886 222224555555554 7788999999998888
Q ss_pred HHHHhcCC----CccHHHHHHHHHHHh
Q 026242 151 FEQFLSTN----DYSLKEAASTAYAQV 173 (241)
Q Consensus 151 l~~l~~~~----~~~l~~~a~~AY~~T 173 (241)
+..+..++ +++.+.-+++.|+.+
T Consensus 203 l~~l~~~~~~~~~~~~~~~l~dv~~~~ 229 (322)
T COG0598 203 LLRLARRPLDWLSEEDREYLRDVLDHL 229 (322)
T ss_pred HHHHHhcCcccCCHHHHHHHHHHHHHH
Confidence 88888765 344555566666554
No 14
>PF09409 PUB: PUB domain; InterPro: IPR018997 The PUB (also known as PUG) domain is found in peptide N-glycanase where it functions as a AAA ATPase binding domain []. This domain is also found on other proteins linked to the ubiquitin-proteasome system. ; PDB: 2CM0_A 2CCQ_A 2D5U_A 2HPL_A 2HPJ_A.
Probab=23.50 E-value=1.2e+02 Score=22.28 Aligned_cols=54 Identities=9% Similarity=0.241 Sum_probs=36.5
Q ss_pred HhhHHHHHHHHHHHHhcCCC-ccHH--HHHHHHHHHhhcCCCcHhHHHHHHHHhhcCC
Q 026242 140 VRQGLDLVRALFEQFLSTND-YSLK--EAASTAYAQVCAPYHSWTVRAAVSAGMYTLP 194 (241)
Q Consensus 140 L~RaL~Fi~~fl~~l~~~~~-~~l~--~~a~~AY~~TL~~yH~w~VR~~f~~Am~alP 194 (241)
..++++.+...+.+++..|+ ++.+ .....++.+.+.+++| .+.=...+++...+
T Consensus 6 ~~~al~~L~~il~NI~~~P~~~kyR~Ir~~N~~f~~~i~~~~g-~~~~L~~~GF~~~~ 62 (87)
T PF09409_consen 6 FQKALETLEKILSNILSNPNEEKYRRIRLSNKTFQEKILPVPG-ARELLEALGFREVT 62 (87)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-CGGGEEETTSHHHHHHTTTSTT-HHHHHHHHT-EE--
T ss_pred HHHHHHHHHHHHHHHccCCCcccceEeecCcchHHHHhcCChh-HHHHHHHCCCEEec
Confidence 46799999999999999884 3332 3466889999999999 44434444444443
No 15
>PF14516 AAA_35: AAA-like domain
Probab=22.78 E-value=1.8e+02 Score=26.80 Aligned_cols=54 Identities=17% Similarity=0.094 Sum_probs=33.4
Q ss_pred HHHHHHHhhcCCCcHhHHHHHHHHhhcCCCHHHHHHHhccChHHHHHHHHHHHHHH
Q 026242 166 ASTAYAQVCAPYHSWTVRAAVSAGMYTLPTREQLLLRLNENDQSAGKKMRRYINAS 221 (241)
Q Consensus 166 a~~AY~~TL~~yH~w~VR~~f~~Am~alP~R~~fl~~l~~~e~~~~~~l~~~~~al 221 (241)
...-|+-|=+ |||+||++.......--+-++++..-..+...-..+++.....+
T Consensus 222 ~~~l~~~tgG--hP~Lv~~~~~~l~~~~~~~~~l~~~a~~~~~~~~~hL~~l~~~L 275 (331)
T PF14516_consen 222 LEQLMDWTGG--HPYLVQKACYLLVEEQITLEQLLEEAITDNGIYNDHLDRLLDRL 275 (331)
T ss_pred HHHHHHHHCC--CHHHHHHHHHHHHHccCcHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 5555555533 99999999999888655666776654322222334555554444
No 16
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=22.56 E-value=9.4e+02 Score=25.90 Aligned_cols=157 Identities=16% Similarity=0.205 Sum_probs=86.9
Q ss_pred chHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHhHH-HH-------HH--cccccccHHHHHHHHHhcCCCCCCCCcchh
Q 026242 68 RLDVFCEACSLVSVLFNCLG-LAFKFARMEYVTKVQ-NL-------VE--ASKAYDNLHDILDMDIANDTVKAPGSHSRN 136 (241)
Q Consensus 68 ~t~~FL~A~~~l~~lfd~LG-~~F~fv~~Dv~~nI~-~l-------~~--~~~~~~TL~~mv~~E~~~~~~~~~~S~tr~ 136 (241)
+-++|.-.-..|-.+=-.|. ..|+.-.+|+..||+ .| ++ +++.|.+|-++|..= | +.-++|||+
T Consensus 763 e~EQF~vvm~~vkrL~pRL~~ilFKl~fse~vnniKP~i~avt~ACEE~rkSesFs~lLeLvLl~---G--NyMn~gSrN 837 (1102)
T KOG1924|consen 763 EPEQFVVVMSQVKRLRPRLSAILFKLTFSEQVNNIKPDIVAVTAACEELRKSESFSKLLELVLLV---G--NYMNSGSRN 837 (1102)
T ss_pred CHHHHhHHHhhccccChhHHHHHHHhhHHHHHhhcChHHHHHHHHHHHHHhhhhHHHHHHHHHHH---h--ccccccccc
Confidence 45677666555555555555 578888899999885 22 11 467777877777652 2 112455555
Q ss_pred HHHHhhHHHHHHHHHHHHhcCCC--c------cHHHHHHHHHHHhhcCCC------------cHhHHHHHHHH-------
Q 026242 137 LRRVRQGLDLVRALFEQFLSTND--Y------SLKEAASTAYAQVCAPYH------------SWTVRAAVSAG------- 189 (241)
Q Consensus 137 LLwL~RaL~Fi~~fl~~l~~~~~--~------~l~~~a~~AY~~TL~~yH------------~w~VR~~f~~A------- 189 (241)
--|+-|=..||-++.++.+ + -|.+.|.+-|-..|+=+- -=.+|+.+..-
T Consensus 838 ----a~afgF~is~L~kL~dTKsaDqk~TLLHfLae~~e~kypd~l~F~ddl~hv~kaSrvnad~ikK~~~~m~~~ik~L 913 (1102)
T KOG1924|consen 838 ----AQAFGFNISFLCKLRDTKSADQKTTLLHFLAEICEEKYPDILKFPDDLEHVEKASRVNADEIKKNLQQMENQIKKL 913 (1102)
T ss_pred ----chhhccchHHHHhhccccccchhhHHHHHHHHHHHHhChhhhcchhhHHHHHhhccccHHHHHHHHHHHHHHHHHH
Confidence 3455566666666655432 1 134445555544443221 11223322211
Q ss_pred ------hhcCC-CHHHHHHHhccChHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 026242 190 ------MYTLP-TREQLLLRLNENDQSAG---KKMRRYINASVPVIEYIDELFI 233 (241)
Q Consensus 190 ------m~alP-~R~~fl~~l~~~e~~~~---~~l~~~~~al~~v~~~i~~~y~ 233 (241)
++..+ .++.|..++..-.+++. ..+......|++.|+.+-+.|.
T Consensus 914 e~dlk~~~~~~~e~dkF~ekM~~F~e~a~eq~~~ls~M~~~M~~lye~L~eYya 967 (1102)
T KOG1924|consen 914 ERDLKNFKIAGNEHDKFVEKMTSFHEKAREQYSKLSSMHGNMEKLYESLGEYYA 967 (1102)
T ss_pred HHHHHhcCCCCcchhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHee
Confidence 22233 67778887764333333 4566677778888777766664
No 17
>PRK14161 heat shock protein GrpE; Provisional
Probab=22.12 E-value=2e+02 Score=24.60 Aligned_cols=53 Identities=13% Similarity=0.165 Sum_probs=39.5
Q ss_pred HHHHhhcCCCHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 026242 186 VSAGMYTLPTREQLLLRLNENDQSAGKKMRRYINASVPVIEYIDELFISRNIK 238 (241)
Q Consensus 186 f~~Am~alP~R~~fl~~l~~~e~~~~~~l~~~~~al~~v~~~i~~~y~~~~l~ 238 (241)
-+++-..+|--.+|=+.+..........+..++..++-++..+.+.|+++|+.
T Consensus 69 ~~~~~~LLpv~DnlerAl~~~~~~~~~~~~~~~~Gv~mi~k~l~~vL~~~Gv~ 121 (178)
T PRK14161 69 ATFAKELLNVSDNLSRALAHKPANSDVEVTNIIAGVQMTKDELDKVFHKHHIE 121 (178)
T ss_pred HHHHHHHhhHHhHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHCCCE
Confidence 45666788888888887753211112346788999999999999999999984
Done!