Query 026242
Match_columns 241
No_of_seqs 165 out of 426
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 08:56:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026242.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026242hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i3f_A Glycolipid transfer-lik 100.0 1.6E-57 5.5E-62 397.7 20.7 193 34-241 5-201 (224)
2 3kv0_A HET-C2; GLTP, glycolipi 100.0 2.4E-58 8.2E-63 399.1 15.0 192 36-238 12-208 (209)
3 3rzn_A GLTP, glycolipid transf 100.0 1.6E-56 5.6E-61 387.8 13.3 175 67-241 18-207 (209)
4 2jtt_C Calcyclin-binding prote 48.6 22 0.00074 21.7 3.5 27 147-173 8-34 (35)
5 4egw_A Magnesium transport pro 47.2 1.3E+02 0.0044 25.4 9.9 66 80-158 159-227 (280)
6 2hn1_A CORA, magnesium and cob 32.6 2.1E+02 0.0072 23.6 8.7 81 80-174 175-262 (266)
7 2bbh_A Divalent cation transpo 31.4 1.4E+02 0.0047 24.8 7.3 81 80-173 174-261 (269)
8 3ubw_A 14-3-3E, 14-3-3 protein 27.4 91 0.0031 27.1 5.4 92 71-174 119-230 (261)
9 2itb_A TRNA-(MS(2)IO(6)A)-hydr 24.4 1.1E+02 0.0036 25.8 5.1 46 177-229 34-82 (206)
10 2ygw_A Malonyl-COA decarboxyla 23.7 4.5E+02 0.015 24.6 9.7 115 120-234 24-158 (460)
11 2d7c_C RAB11 family-interactin 23.4 72 0.0025 20.1 3.0 26 195-221 2-27 (42)
12 3iqt_A Signal transduction his 20.9 2.6E+02 0.0089 20.8 6.4 45 193-237 14-58 (123)
No 1
>2i3f_A Glycolipid transfer-like protein; GLTP superfamily, GLTP-like, protein structure initiative, PSI; 1.38A {Galdieria sulphuraria} PDB: 2q52_A
Probab=100.00 E-value=1.6e-57 Score=397.66 Aligned_cols=193 Identities=17% Similarity=0.366 Sum_probs=177.6
Q ss_pred hcccCCchHHHHHHHHHHHHHhhcc-CCCCcccCCchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHH-ccc-c
Q 026242 34 KTATMASLSLIVGSFEELAKLLNSR-NGRGCKTDLRLDVFCEACSLVSVLFNCLGLAFKFARMEYVTKVQNLVE-ASK-A 110 (241)
Q Consensus 34 ~~~~~~~l~~v~~~F~~~~~~~~~~-~~~~~~~~I~t~~FL~A~~~l~~lfd~LG~~F~fv~~Dv~~nI~~l~~-~~~-~ 110 (241)
|.+..++|++|.++|++++. . +++ |+|.+||+||++|++|||+||++|+||++||.|||++|.. +|+ +
T Consensus 5 ~~~~~f~l~~v~~~F~~~~~----~~~~~-----I~t~~FL~a~~~l~~~fd~LG~~F~~v~~Dv~gnI~kL~~~~p~~~ 75 (224)
T 2i3f_A 5 KNEEKEDFGIIVILWKQVTV----KEDGK-----VPLEPFLTAAKEVLRVVDAFGSGFRIVKNDIAGNIKKLYRANQTVH 75 (224)
T ss_dssp ------CTTHHHHHHHTSCC----CTTCC-----CBHHHHHHHHHHTHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hcccCCCHHHHHHHHHHhhc----cCCCC-----ccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhCccch
Confidence 45778999999999999975 3 455 9999999999999999999999999999999999999965 677 9
Q ss_pred cccHHHHHHHHHhcCCCCCCCCcchhHHHHhhHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhhcCCCcHhHHHHHHHHh
Q 026242 111 YDNLHDILDMDIANDTVKAPGSHSRNLRRVRQGLDLVRALFEQFLSTNDYSLKEAASTAYAQVCAPYHSWTVRAAVSAGM 190 (241)
Q Consensus 111 ~~TL~~mv~~E~~~~~~~~~~S~tr~LLwL~RaL~Fi~~fl~~l~~~~~~~l~~~a~~AY~~TL~~yH~w~VR~~f~~Am 190 (241)
|.||++||.+|+ + +++||||+||||||||+|++.||++++.+++ +++++|++||++||+|||||+||++|++||
T Consensus 76 ~~TL~~mv~~E~-~----k~~S~tr~LLwL~RaL~Fi~~~l~~l~~~~~-~l~~~~~~AY~~tL~~yHgwivr~af~~Am 149 (224)
T 2i3f_A 76 AETLQELIIAEN-S----PDGLATVALLWLKRAFQFIASFLRRLVVTDK-SLEQCVTEAYNCTLRPCHSAVIQKVFWGGV 149 (224)
T ss_dssp CSBHHHHHHHHC-S----TTCHHHHHHHHHHHHHHHHHHHHHHHHHCCS-CHHHHHHHHHHTTTGGGSCHHHHHHHHHHH
T ss_pred hhhHHHHHHHHH-h----cCCchhHHHHHHHHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhhcCCchHHHHHHHHHH
Confidence 999999999998 4 3689999999999999999999999999887 999999999999999999999999999999
Q ss_pred hcCCCHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCC
Q 026242 191 YTLPTREQLLLRLNENDQSAGKKMRRYINASVPVIEYIDELFISRNIK-LNW 241 (241)
Q Consensus 191 ~alP~R~~fl~~l~~~e~~~~~~l~~~~~al~~v~~~i~~~y~~~~l~-~~~ 241 (241)
+++|+|++|+++|+++++++.++|++|+.++++++++|++||+++||+ ++|
T Consensus 150 ~a~P~R~~fl~~L~~~~~~~~~~l~~~l~~l~~v~~~i~~ly~~~~L~d~~~ 201 (224)
T 2i3f_A 150 KLAPSRERFYRKLHPDLNIAKAKIEEFLIELHDPLCCIVQFFFQRELEDQCW 201 (224)
T ss_dssp TTCCCHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCC
T ss_pred HhCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCccc
Confidence 999999999999999999999999999999999999999999999996 565
No 2
>3kv0_A HET-C2; GLTP, glycolipid transfer protein, transport protein; HET: MLY; 1.90A {Podospora anserina}
Probab=100.00 E-value=2.4e-58 Score=399.14 Aligned_cols=192 Identities=19% Similarity=0.312 Sum_probs=177.2
Q ss_pred ccCCchHHHHHHHHHHHHHhhccCCCCcccCCchHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHHhHHHHHH----cccc
Q 026242 36 ATMASLSLIVGSFEELAKLLNSRNGRGCKTDLRLDVFCEACSLVSVLFNCLGL-AFKFARMEYVTKVQNLVE----ASKA 110 (241)
Q Consensus 36 ~~~~~l~~v~~~F~~~~~~~~~~~~~~~~~~I~t~~FL~A~~~l~~lfd~LG~-~F~fv~~Dv~~nI~~l~~----~~~~ 110 (241)
+|+|+|++|.++|.+++... +.+++ |+|.+||+||++|++|||+||+ +|+||++||.|||++|++ +|++
T Consensus 12 ~~~tff~~~~~~F~~~~~~~-~~~~~-----I~t~~fL~a~~~l~~~fd~LG~~~F~~v~~D~~~nI~kl~~~~~~~~~~ 85 (209)
T 3kv0_A 12 AGATFLETFXXSFVDVPIDA-EXGNA-----ISTAEFLEAAESLTTMFDVLGSIAFSPVXTDMLGNVEXIRXRMLAAPLE 85 (209)
T ss_dssp ---CGGGGCSSCGGGCCEEG-GGTSE-----EBHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHSGGG
T ss_pred CCCccHHHHHhhHHhCCCcc-ccCCC-----ccHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhHHHHHHHhhcCchh
Confidence 79999999999999997510 11555 9999999999999999999997 999999999999999986 6899
Q ss_pred cccHHHHHHHHHhcCCCCCCCCcchhHHHHhhHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhhcCCCcHhHHHHHHHHh
Q 026242 111 YDNLHDILDMDIANDTVKAPGSHSRNLRRVRQGLDLVRALFEQFLSTNDYSLKEAASTAYAQVCAPYHSWTVRAAVSAGM 190 (241)
Q Consensus 111 ~~TL~~mv~~E~~~~~~~~~~S~tr~LLwL~RaL~Fi~~fl~~l~~~~~~~l~~~a~~AY~~TL~~yH~w~VR~~f~~Am 190 (241)
|.||++||++|++++ ++||||+||||||||+|++.||++++ +++++++++|++||++||+|||||+||++|++||
T Consensus 86 ~~tL~~mv~~E~~~~----~~S~tr~LLwL~RaL~fi~~~l~~l~-~~~~~l~~~~~~AY~~tL~~yHgw~vr~af~~A~ 160 (209)
T 3kv0_A 86 SQNIQDLVRNELXTX----SHTATEGLLWLVRGLEFTCIALSXNI-GSTEELADSFRGSYRVTLXPHHSFLVXPIFSAAM 160 (209)
T ss_dssp CSBHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHHHHHHHHHH-TSCCCHHHHHHHHHHHTTGGGSCTTTHHHHHHHH
T ss_pred hchHHHHHHHHHHhc----ccchHHHHHHHHHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 999999999999875 68999999999999999999999999 7788999999999999999999999999999999
Q ss_pred hcCCCHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 026242 191 YTLPTREQLLLRLNENDQSAGKKMRRYINASVPVIEYIDELFISRNIK 238 (241)
Q Consensus 191 ~alP~R~~fl~~l~~~e~~~~~~l~~~~~al~~v~~~i~~~y~~~~l~ 238 (241)
+++|+|++|+++|+++++++.++|++|++++++|+++|++||+++|..
T Consensus 161 ~a~P~R~~fl~~l~~~~~~~~~~L~~~l~al~~v~~~i~~~~~~~~~~ 208 (209)
T 3kv0_A 161 SACPYRXDFYAXLGDDEQXVQEELREYLVALDXIVNILXRFLESXEAX 208 (209)
T ss_dssp HTCCCHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGC
T ss_pred HhCCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcC
Confidence 999999999999999999999999999999999999999999999864
No 3
>3rzn_A GLTP, glycolipid transfer protein; GLTP-fold, lipid transport; HET: CIS; 1.10A {Homo sapiens} PDB: 1sx6_A* 2euk_A* 2eum_A* 2evd_A* 2evl_A* 2evs_A* 1swx_A 3rwv_A* 3s0k_A* 3s0i_A* 2evt_A* 1wbe_A* 3ric_A* 1tfj_A* 2bv7_A*
Probab=100.00 E-value=1.6e-56 Score=387.78 Aligned_cols=175 Identities=21% Similarity=0.422 Sum_probs=164.4
Q ss_pred CchHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHHhHHHHHH----cccccccHHHHHHHHHhcCCCC-CCCCcchhHHHH
Q 026242 67 LRLDVFCEACSLVSVLFNCLGL-AFKFARMEYVTKVQNLVE----ASKAYDNLHDILDMDIANDTVK-APGSHSRNLRRV 140 (241)
Q Consensus 67 I~t~~FL~A~~~l~~lfd~LG~-~F~fv~~Dv~~nI~~l~~----~~~~~~TL~~mv~~E~~~~~~~-~~~S~tr~LLwL 140 (241)
|+|.+||+||++|++|||+||+ +|+||++||.|||++|++ +|++|.||++||++|++.|+.. .+.||||+||||
T Consensus 18 i~t~~fL~a~~~l~~~~d~LG~~~F~~v~~D~~~nI~kl~~~~~~~~~~~~tL~~mv~~E~~~~~~~~~~~s~tr~LLwL 97 (209)
T 3rzn_A 18 IETGPFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPAKFRTLQNILEVEKEMYGAEWPKVGATLALMWL 97 (209)
T ss_dssp CBHHHHHHHHTTSGGGGGGSSCGGGHHHHHHHHHHHHHHHHHHHHCTTTTSBHHHHHHHHHHHHGGGTTSSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHhcCchhhccHHHHHHHHHHcCCcccCCchHHHHHHHH
Confidence 9999999999999999999997 999999999999999986 6899999999999999998763 467999999999
Q ss_pred hhHHHHHHHHHHHHhcCCCc-----cHHHHHHHHHHHhhcCCCcHhHHHHHHHHhhcCCCHHHHHHHh--ccC--hHHHH
Q 026242 141 RQGLDLVRALFEQFLSTNDY-----SLKEAASTAYAQVCAPYHSWTVRAAVSAGMYTLPTREQLLLRL--NEN--DQSAG 211 (241)
Q Consensus 141 ~RaL~Fi~~fl~~l~~~~~~-----~l~~~a~~AY~~TL~~yH~w~VR~~f~~Am~alP~R~~fl~~l--~~~--e~~~~ 211 (241)
||||+|++.||+++.+++++ +++++|++||++||+|||||+||++|++||+++|+|++|++++ |.+ ++++.
T Consensus 98 ~R~L~fi~~~l~~l~~~~~~~~~~~~l~~~~~~AY~~tL~~~H~w~vr~a~~~A~~a~P~R~~fl~~l~~g~~~~ee~~~ 177 (209)
T 3rzn_A 98 KRGLRFIQVFLQSICDGERDENHPNLIRVNATKAYEMALKKYHGWIVQKIFQAALYAAPYKSDFLKALSKGQNVTEEECL 177 (209)
T ss_dssp HHHHHHHHHHHHHHHTTCCCTTSTTCCHHHHHHHHHHHTGGGSCHHHHHHHHHHGGGCCCHHHHHHHHTTTSCCCHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHhCCCHHHHHHHHhcCCCCcHHHHH
Confidence 99999999999999986632 3999999999999999999999999999999999999999999 444 88999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 026242 212 KKMRRYINASVPVIEYIDELFISRNIKLNW 241 (241)
Q Consensus 212 ~~l~~~~~al~~v~~~i~~~y~~~~l~~~~ 241 (241)
++|++|+.++++|+++|++||+++||+.|+
T Consensus 178 ~~l~~~l~~l~~iv~~i~~~~~~~~L~~~~ 207 (209)
T 3rzn_A 178 EKIRLFLVNYTATIDVIYEMYTQMNAELNY 207 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 999999999999999999999999999985
No 4
>2jtt_C Calcyclin-binding protein; S100A6, SIAH-1 interacting protein, ubiquitination, E3 ligase complex, beta-catenin, calcium, cell cycle, mitogen; NMR {Mus musculus}
Probab=48.57 E-value=22 Score=21.67 Aligned_cols=27 Identities=11% Similarity=0.308 Sum_probs=23.0
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHh
Q 026242 147 VRALFEQFLSTNDYSLKEAASTAYAQV 173 (241)
Q Consensus 147 i~~fl~~l~~~~~~~l~~~a~~AY~~T 173 (241)
+-.||++|+.+.+++.+.+..+||.++
T Consensus 8 l~~~fk~iY~~gddd~kram~KS~~eS 34 (35)
T 2jtt_C 8 LMNVLKKIYEDGDDDMKRTINKAWVES 34 (35)
T ss_dssp HHHHHHHHHTTCCSSHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhc
Confidence 457899999988889999999999764
No 5
>4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii}
Probab=47.20 E-value=1.3e+02 Score=25.38 Aligned_cols=66 Identities=14% Similarity=0.175 Sum_probs=44.9
Q ss_pred HHHHHhhhhhhHHHHHHHHHhHHHHHH---cccccccHHHHHHHHHhcCCCCCCCCcchhHHHHhhHHHHHHHHHHHHhc
Q 026242 80 SVLFNCLGLAFKFARMEYVTKVQNLVE---ASKAYDNLHDILDMDIANDTVKAPGSHSRNLRRVRQGLDLVRALFEQFLS 156 (241)
Q Consensus 80 ~~lfd~LG~~F~fv~~Dv~~nI~~l~~---~~~~~~TL~~mv~~E~~~~~~~~~~S~tr~LLwL~RaL~Fi~~fl~~l~~ 156 (241)
..++|.+=--+.++-..+...+..|++ .+..-..++.+.... +.|+.|+|++.-....+..+..
T Consensus 159 ~~lld~ivd~y~~~l~~i~~~id~lE~~l~~~~~~~~l~~i~~lr-------------r~l~~lrr~l~p~~~vl~~L~~ 225 (280)
T 4egw_A 159 YHILNEITRSYSRILMNLEDELEELEDKLLAGYDREVMEKILGLR-------------KTLVYFHKSLIANRDVLVLLKR 225 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHH-------------HHHHHHHHHHhhHHHHHHHHHh
Confidence 356666655566777788888888876 222334455555443 6688889999888888888876
Q ss_pred CC
Q 026242 157 TN 158 (241)
Q Consensus 157 ~~ 158 (241)
..
T Consensus 226 ~~ 227 (280)
T 4egw_A 226 KY 227 (280)
T ss_dssp SC
T ss_pred cC
Confidence 54
No 6
>2hn1_A CORA, magnesium and cobalt transporter; integral membrane protein fragment, metal transporter protei divalent cations, metal transport; 2.90A {Archaeoglobus fulgidus}
Probab=32.61 E-value=2.1e+02 Score=23.64 Aligned_cols=81 Identities=11% Similarity=0.174 Sum_probs=52.6
Q ss_pred HHHHHhhhhhhHHHHHHHHHhHHHHHHc---ccccccHHHHHHHHHhcCCCCCCCCcchhHHHHhhHHHHHHHHHHHHhc
Q 026242 80 SVLFNCLGLAFKFARMEYVTKVQNLVEA---SKAYDNLHDILDMDIANDTVKAPGSHSRNLRRVRQGLDLVRALFEQFLS 156 (241)
Q Consensus 80 ~~lfd~LG~~F~fv~~Dv~~nI~~l~~~---~~~~~TL~~mv~~E~~~~~~~~~~S~tr~LLwL~RaL~Fi~~fl~~l~~ 156 (241)
..++|.+=--+.++-..+...|..|++. +.. ..++.|.... +.++.|+|++.=....+..+..
T Consensus 175 ~~lld~ivd~y~~~l~~i~~~id~lE~~l~~~~~-~~l~~l~~lr-------------r~l~~lrr~l~p~~~vl~~L~~ 240 (266)
T 2hn1_A 175 YTILDAVVDSYFEALLKISDEIEVLEDEVVSGDS-TLIGKIHSLK-------------REILAFRNAVWPLRDVLSFFTR 240 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-CCCCHHHHHH-------------HHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcH-HHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666555666667777778777751 222 4444444333 6788888888888888888876
Q ss_pred CC----CccHHHHHHHHHHHhh
Q 026242 157 TN----DYSLKEAASTAYAQVC 174 (241)
Q Consensus 157 ~~----~~~l~~~a~~AY~~TL 174 (241)
.+ +++...-+++.|+...
T Consensus 241 ~~~~~~~~~~~~~lrDv~dh~~ 262 (266)
T 2hn1_A 241 VEHELIGEEVKVYYRDVYDHAV 262 (266)
T ss_dssp CCCTTSCTTTHHHHHHHHHHHH
T ss_pred cCCccCCHHHHHHHHHHHHHHH
Confidence 43 3556677788887653
No 7
>2bbh_A Divalent cation transport-related protein; transporter, Mg, membrane, structural genomics, structural G consortium, SGC; HET: DMU; 1.85A {Thermotoga maritima} SCOP: d.328.1.1
Probab=31.42 E-value=1.4e+02 Score=24.80 Aligned_cols=81 Identities=12% Similarity=0.140 Sum_probs=43.5
Q ss_pred HHHHHhhhhhhHHHHHHHHHhHHHHHHc---ccccccHHHHHHHHHhcCCCCCCCCcchhHHHHhhHHHHHHHHHHHHhc
Q 026242 80 SVLFNCLGLAFKFARMEYVTKVQNLVEA---SKAYDNLHDILDMDIANDTVKAPGSHSRNLRRVRQGLDLVRALFEQFLS 156 (241)
Q Consensus 80 ~~lfd~LG~~F~fv~~Dv~~nI~~l~~~---~~~~~TL~~mv~~E~~~~~~~~~~S~tr~LLwL~RaL~Fi~~fl~~l~~ 156 (241)
..++|.+=--+.++-.++...|..|++. +..-..++.|.... +.++.|+|++.=....+..+..
T Consensus 174 ~~lld~ivd~y~~~l~~i~~~id~lE~~v~~~~~~~~l~~l~~lr-------------r~l~~lrr~l~p~~~vl~~L~~ 240 (269)
T 2bbh_A 174 YSLIDALVDDYFVLLEKIDDEIDVLEEEVLERPEKETVQRTHQLK-------------RNLVELRKTIWPLREVLSSLYR 240 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666555667777888888888862 22234566654443 6788888888888888888865
Q ss_pred CC----CccHHHHHHHHHHHh
Q 026242 157 TN----DYSLKEAASTAYAQV 173 (241)
Q Consensus 157 ~~----~~~l~~~a~~AY~~T 173 (241)
.+ +++...-+++.|+..
T Consensus 241 ~~~~~~~~~~~~~lrDv~dh~ 261 (269)
T 2bbh_A 241 DVPPLIEKETVPYFRDVYDHT 261 (269)
T ss_dssp HHHHHTC--------------
T ss_pred cCCccCCHHHHHHHHHHHHHH
Confidence 31 233444555555543
No 8
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=27.36 E-value=91 Score=27.10 Aligned_cols=92 Identities=14% Similarity=0.235 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHhh-------h--hhhHH-HHHHHHHhHHHHHH----------cccccccHHHHHHHHHhcCCCCCC
Q 026242 71 VFCEACSLVSVLFNCL-------G--LAFKF-ARMEYVTKVQNLVE----------ASKAYDNLHDILDMDIANDTVKAP 130 (241)
Q Consensus 71 ~FL~A~~~l~~lfd~L-------G--~~F~f-v~~Dv~~nI~~l~~----------~~~~~~TL~~mv~~E~~~~~~~~~ 130 (241)
+...-|.+|+.++|.. | .+|.. .+.|+-.-+..+.. .-..|+.-.++...++.
T Consensus 119 EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlAE~~~g~~rk~~~e~a~~aY~~A~~iA~~~L~------- 191 (261)
T 3ubw_A 119 ELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELP------- 191 (261)
T ss_dssp HHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHSC-------
T ss_pred HHHHHHHHHHHHHHHhccccCCcHHHHHHHHHhhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhhCC-------
Confidence 4667799999999875 2 46665 56676544432211 12334333333333321
Q ss_pred CCcchhHHHHhhHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhh
Q 026242 131 GSHSRNLRRVRQGLDLVRALFEQFLSTNDYSLKEAASTAYAQVC 174 (241)
Q Consensus 131 ~S~tr~LLwL~RaL~Fi~~fl~~l~~~~~~~l~~~a~~AY~~TL 174 (241)
.|. =+||-=+|+| .+|+-.++.+| +.-...|++|++...
T Consensus 192 --pTh-PirLGLaLNf-SVFyYEIln~p-~~Ac~LAk~AFd~Ai 230 (261)
T 3ubw_A 192 --PTH-PIRLGLALNF-SVFYYEILNSP-DRACRLAKAAFDDAI 230 (261)
T ss_dssp --TTC-HHHHHHHHHH-HHHHHHTSCCH-HHHHHHHHHHHHHHH
T ss_pred --CCC-cHHHHHHHHH-HHHHHHHcCCH-HHHHHHHHHHHHHHH
Confidence 122 3778899999 57888888876 455677778777763
No 9
>2itb_A TRNA-(MS(2)IO(6)A)-hydroxylase, putative; putative ATTH, structural genomics, joint center for structu genomics, JCSG; 2.05A {Pseudomonas putida} SCOP: a.25.1.7
Probab=24.36 E-value=1.1e+02 Score=25.84 Aligned_cols=46 Identities=15% Similarity=0.112 Sum_probs=32.0
Q ss_pred CCcHhHHHHHHHHhhcC---CCHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHH
Q 026242 177 YHSWTVRAAVSAGMYTL---PTREQLLLRLNENDQSAGKKMRRYINASVPVIEYID 229 (241)
Q Consensus 177 yH~w~VR~~f~~Am~al---P~R~~fl~~l~~~e~~~~~~l~~~~~al~~v~~~i~ 229 (241)
=|-|-=|||++.||..+ |++.+++.++.. ..++-+..++.|+++++
T Consensus 34 DHA~CE~KAA~tAm~Li~rYp~~~~Lv~~m~~-------LarEEL~HFeqVl~im~ 82 (206)
T 2itb_A 34 DHKNCEFKAASTALSLIAKYNTHLDLINMMSR-------LAREELVHHEQVLRLMK 82 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCcHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 37777889999999887 999999988842 22233455666665554
No 10
>2ygw_A Malonyl-COA decarboxylase, mitochondrial; lyase; 2.80A {Homo sapiens}
Probab=23.66 E-value=4.5e+02 Score=24.62 Aligned_cols=115 Identities=8% Similarity=0.035 Sum_probs=59.1
Q ss_pred HHHhcCCCCCCCCcchhHHHHhhHHHHH---HHHHHHHhc--CCCccHHHHHHHHHHHhh--cCCCcHhHHHHHHHHhhc
Q 026242 120 MDIANDTVKAPGSHSRNLRRVRQGLDLV---RALFEQFLS--TNDYSLKEAASTAYAQVC--APYHSWTVRAAVSAGMYT 192 (241)
Q Consensus 120 ~E~~~~~~~~~~S~tr~LLwL~RaL~Fi---~~fl~~l~~--~~~~~l~~~a~~AY~~TL--~~yH~w~VR~~f~~Am~a 192 (241)
||...++......-++.++-.-++|+-- ..||..|.. +++..--..+.++|.+.- .+.+.=+.+....+---+
T Consensus 24 ~~~~~~~~~~~e~~a~~i~~~Y~~l~~~~~r~~fl~~La~~f~~d~~~v~~a~~~y~~~~~~~~~~~~~~~~~~~L~~al 103 (460)
T 2ygw_A 24 YELRAATPAPAEGQCADFVSFYGGLAETAQRAELLGRLARGFGVDHGQVAEQSAGVLHLRQQQREAAVLLQAEDRLRYAL 103 (460)
T ss_dssp GGGTTC------CHHHHHHHHHHTCCSHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHT
T ss_pred hhhccCCCCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccCCcchhHHHHHHHHHHHhc
Confidence 4554444333334456666655555444 455555544 334333445777887632 233333334555566677
Q ss_pred CCCHHHHHHHhccC--hHH----HHHHHHHHHH-------HHHHHHHHHHHHHHh
Q 026242 193 LPTREQLLLRLNEN--DQS----AGKKMRRYIN-------ASVPVIEYIDELFIS 234 (241)
Q Consensus 193 lP~R~~fl~~l~~~--e~~----~~~~l~~~~~-------al~~v~~~i~~~y~~ 234 (241)
.|.|..|++.++.- .-. .+++|-.++. .++++=..+..+|.+
T Consensus 104 eP~r~~L~~rln~~pgG~~fLV~mRaDLL~~l~~~~~~~~~L~~Ld~dl~~Llss 158 (460)
T 2ygw_A 104 VPRYRGLFHHISKLDGGVRFLVQLRADLLEAQALKLVEGPDVREMNGVLKGMLSE 158 (460)
T ss_dssp SCTTHHHHHHHHTSTTHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHH
Confidence 89999999999853 222 3344444442 444555555555543
No 11
>2d7c_C RAB11 family-interacting protein 3; GTP-ASE, coiled-coil, protein transport; HET: GTP MES; 1.75A {Homo sapiens} SCOP: h.1.31.1
Probab=23.45 E-value=72 Score=20.09 Aligned_cols=26 Identities=15% Similarity=0.493 Sum_probs=19.3
Q ss_pred CHHHHHHHhccChHHHHHHHHHHHHHH
Q 026242 195 TREQLLLRLNENDQSAGKKMRRYINAS 221 (241)
Q Consensus 195 ~R~~fl~~l~~~e~~~~~~l~~~~~al 221 (241)
||++++..+.+.++ ....|+.|++.+
T Consensus 2 S~~eL~~~l~~qee-~n~~Le~YID~L 27 (42)
T 2d7c_C 2 SRDELMEAIQKQEE-INFRLQDYIDRI 27 (42)
T ss_dssp CHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 68889988865443 567888888865
No 12
>3iqt_A Signal transduction histidine-protein kinase BARA; histidine phosphotransfer domain, HTP, structural genomics, protein structure initiative; HET: MSE BTB; 1.40A {Escherichia coli}
Probab=20.85 E-value=2.6e+02 Score=20.83 Aligned_cols=45 Identities=11% Similarity=0.079 Sum_probs=37.7
Q ss_pred CCCHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 026242 193 LPTREQLLLRLNENDQSAGKKMRRYINASVPVIEYIDELFISRNI 237 (241)
Q Consensus 193 lP~R~~fl~~l~~~e~~~~~~l~~~~~al~~v~~~i~~~y~~~~l 237 (241)
+-+.+..++..+++++-+.+.+..|+..+...+..|+..+...+.
T Consensus 14 ~~D~~~~l~~a~g~~~La~elL~~fl~~~~~~~~~l~~a~~~~d~ 58 (123)
T 3iqt_A 14 TLDWQLALRQAAGKTDLARDMLQMLLDFLPEVRNKVEEQLVGENP 58 (123)
T ss_dssp TCCHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 345677777888888888899999999999999999999987764
Done!