BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026244
(241 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SF29|SYP71_ARATH Syntaxin-71 OS=Arabidopsis thaliana GN=SYP71 PE=1 SV=1
Length = 266
Score = 392 bits (1006), Expect = e-108, Method: Compositional matrix adjust.
Identities = 189/238 (79%), Positives = 211/238 (88%), Gaps = 2/238 (0%)
Query: 1 MSVIDILTRVDSICKKYDKYDVEKQRETNVSGDDAFARLYGAVEADIEAALQKAESASNE 60
M+VIDILTRVDSICKKYDKYDV+KQRE N+SGDDAFARLYGA E IE AL+KAE + E
Sbjct: 1 MTVIDILTRVDSICKKYDKYDVDKQREANISGDDAFARLYGAFETQIETALEKAELVTKE 60
Query: 61 KNRASVVALNAEIRRTKARLLEEVPKLQRLAIKKVKGLSTEELVARNDLVLALPDRIQAI 120
KNRA+ VA+NAEIRRTKARL EEVPKLQRLA+K+VKGL+TEEL ARNDLVLALP RI+AI
Sbjct: 61 KNRAAAVAMNAEIRRTKARLSEEVPKLQRLAVKRVKGLTTEELAARNDLVLALPARIEAI 120
Query: 121 PDGTAAAPKQSGGWGASA--SRTEIKFDSDGRFDDEYFQQTEESSQFRQEYEMRKMKQDQ 178
PDGTA PK + W S+ SR +IKFDSDGRFDD+YFQ++ ESSQFRQEYEMRK+KQ+Q
Sbjct: 121 PDGTAGGPKSTSAWTPSSTTSRPDIKFDSDGRFDDDYFQESNESSQFRQEYEMRKIKQEQ 180
Query: 179 GLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQV 236
GLDMISEGLD LKNMA DMNEE+DRQVPLMDEIDTKVDRAT+DLKNTNVRLK TV Q+
Sbjct: 181 GLDMISEGLDALKNMASDMNEELDRQVPLMDEIDTKVDRATSDLKNTNVRLKDTVNQL 238
>sp|Q94KK6|SYP72_ARATH Syntaxin-72 OS=Arabidopsis thaliana GN=SYP72 PE=2 SV=1
Length = 267
Score = 316 bits (809), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 158/239 (66%), Positives = 195/239 (81%), Gaps = 3/239 (1%)
Query: 1 MSVIDILTRVDSICKKYDKYDVEKQRETNVSGDDAFARLYGAVEADIEAALQKAESASNE 60
M VIDI+ RVD ICKKYDKYD++K RE SGDDAF+RL+ ++++DIEA L+KAE AS E
Sbjct: 1 MPVIDIIFRVDEICKKYDKYDIDKHREIGASGDDAFSRLFTSIDSDIEAVLRKAELASTE 60
Query: 61 KNRASVVALNAEIRRTKARLLEEVPKLQRLAIKKVKGLSTEELVARNDLVLALPDRIQAI 120
KNRA+ VA+NAE+RRTKARL E+V KLQ+LA+KK+KGL+ EE +R DLV+AL DR+QAI
Sbjct: 61 KNRAAAVAMNAEVRRTKARLAEDVVKLQKLAVKKIKGLTREERESRCDLVIALADRLQAI 120
Query: 121 PDGTAAAPKQSGG-W-GASASRTEIKFD-SDGRFDDEYFQQTEESSQFRQEYEMRKMKQD 177
PDG KQ+ W GASA IKFD S+ DD +FQQ+EESSQFRQEYEMR+ KQD
Sbjct: 121 PDGNEHGAKQANSDWGGASAPNKNIKFDMSEEDMDDGFFQQSEESSQFRQEYEMRRKKQD 180
Query: 178 QGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQV 236
+GLD+ISEGLD LKN+A DMNEE+D+QVPLM+E++TKVD AT+DLKNTNVRLK + Q+
Sbjct: 181 EGLDIISEGLDALKNLARDMNEELDKQVPLMEEMETKVDGATSDLKNTNVRLKKQLVQM 239
>sp|Q94KK5|SYP73_ARATH Syntaxin-73 OS=Arabidopsis thaliana GN=SYP73 PE=2 SV=1
Length = 263
Score = 314 bits (805), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 158/239 (66%), Positives = 192/239 (80%), Gaps = 7/239 (2%)
Query: 1 MSVIDILTRVDSICKKYDKYDVEKQRETNVSGDDAFARLYGAVEADIEAALQKAESASNE 60
M VID++TRVDSICKKY+KYD+ +QR+ NVSGDDAF+RLY AVE +E LQK E S+E
Sbjct: 1 MGVIDLITRVDSICKKYEKYDINRQRDANVSGDDAFSRLYSAVEYALETVLQKTEDLSSE 60
Query: 61 KNRASVVALNAEIRRTKARLLEEVPKLQRLAIKKVKGLSTEELVARNDLVLALPDRIQAI 120
N+A VA+NAEIRRTKARLLE +PKLQRL++KKVKGLS EEL ARNDLVL+L D+I+AI
Sbjct: 61 TNKAKAVAMNAEIRRTKARLLEGIPKLQRLSLKKVKGLSKEELDARNDLVLSLRDKIEAI 120
Query: 121 PDGTAAAPKQSGGWGASASRTEIKFD---SDGRFDDEYFQQTEESSQFRQEYEMRKMKQD 177
P+ +A GGW AS S + I+FD SD R EYFQ T ES QF+QEYEM+++KQ
Sbjct: 121 PESSAPV---VGGWEASTSYSNIRFDTNVSDDRIGSEYFQPTGESDQFKQEYEMKRIKQA 177
Query: 178 QGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQV 236
+ LD I+EGLDTLKNMA D+NEE+DRQ PLMDEIDTK+D+A DLK+TNVRLK TVT++
Sbjct: 178 R-LDYIAEGLDTLKNMAQDINEELDRQEPLMDEIDTKIDKAATDLKSTNVRLKDTVTKL 235
>sp|Q54IX6|STX8B_DICDI Probable syntaxin-8B OS=Dictyostelium discoideum GN=syn8B PE=3 SV=1
Length = 250
Score = 53.9 bits (128), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 106/215 (49%), Gaps = 25/215 (11%)
Query: 34 DAFARLYGAVEADIEAALQKAESASNEKNRASVVALN--AEIRRTKARLLEEVPKLQ-RL 90
D +L ++ ADI+ E + ++N +V N A++R + E+ +LQ L
Sbjct: 10 DNIVKLINSLTADIK------EYSIQQRNNPGIVQKNTPAKLRNGLVHITNEILRLQDSL 63
Query: 91 AIKKVKGLSTEELVARNDLV---LALPDRIQAIPDGTAAAPKQSGGWGASASRTEIKFDS 147
+ + +EL+ R + V +++ +++ + D Q + + I + S
Sbjct: 64 TYGNNRNIQEKELLRRKNKVESLISMKNQLNSTLDAAINNTSQKNELMGNNNGVGIGY-S 122
Query: 148 DGRFDDEYFQQTEESSQF-------RQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEE 200
+ +F ++TE + QF Q++ MR+ QD+ LD++S+ + KNMAH M+ E
Sbjct: 123 NRQFGKP--KETEATKQFDNQQLFTNQQHIMRE--QDESLDLLSQSIMRQKNMAHAMSNE 178
Query: 201 VDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQ 235
+D+ ++D+++ D + L+N N R++ T+ Q
Sbjct: 179 LDQHNEMLDDVEIGTDAVSMRLRNANRRME-TIKQ 212
>sp|Q9LMG8|SNP30_ARATH Putative SNAP25 homologous protein SNAP30 OS=Arabidopsis thaliana
GN=SNAP30 PE=3 SV=1
Length = 263
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%)
Query: 167 QEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTN 226
Q+ E K KQD GL +S+ L LK+MA DM E+D+Q +D + VD + ++ N
Sbjct: 195 QKVEQEKAKQDDGLSDLSDILGDLKSMAVDMGSEIDKQNKALDHLGDDVDELNSRVQGAN 254
Query: 227 VRLKHTVTQ 235
R +H +++
Sbjct: 255 QRARHLLSK 263
>sp|Q9S7P9|SNP33_ARATH SNAP25 homologous protein SNAP33 OS=Arabidopsis thaliana GN=SNAP33
PE=1 SV=1
Length = 300
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 45/89 (50%)
Query: 140 RTEIKFDSDGRFDDEYFQQTEESSQFRQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNE 199
R ++ +S R + ES+ Q EM K KQD GL +S+ L LKNMA DM
Sbjct: 205 REKLGLNSAPRGQSRTREPLPESADAYQRVEMEKAKQDDGLSDLSDILGELKNMAVDMGS 264
Query: 200 EVDRQVPLMDEIDTKVDRATADLKNTNVR 228
E+++Q +D + VD ++ +N R
Sbjct: 265 EIEKQNKGLDHLHDDVDELNFRVQQSNQR 293
>sp|Q5R5K4|SNP29_PONAB Synaptosomal-associated protein 29 OS=Pongo abelii GN=SNAP29 PE=2
SV=1
Length = 258
Score = 37.4 bits (85), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 35/57 (61%)
Query: 175 KQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKH 231
K D LD +S GL LK++A M E++ Q ++D + TKVD+ ++K+T +++
Sbjct: 201 KIDSNLDELSVGLGRLKDIALGMQTEIEEQDDILDRLTTKVDKLDVNIKSTERKVRQ 257
>sp|O95721|SNP29_HUMAN Synaptosomal-associated protein 29 OS=Homo sapiens GN=SNAP29 PE=1
SV=1
Length = 258
Score = 37.4 bits (85), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 35/57 (61%)
Query: 175 KQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKH 231
K D LD +S GL LK++A M E++ Q ++D + TKVD+ ++K+T +++
Sbjct: 201 KIDSNLDELSMGLGRLKDIALGMQTEIEEQDDILDRLTTKVDKLDVNIKSTERKVRQ 257
>sp|Q9ERB0|SNP29_MOUSE Synaptosomal-associated protein 29 OS=Mus musculus GN=Snap29 PE=1
SV=1
Length = 260
Score = 37.4 bits (85), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 35/56 (62%)
Query: 175 KQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLK 230
K D LD +S GL LK++A M E++ Q ++D + TKVD+ ++K+T +++
Sbjct: 203 KIDSNLDELSVGLGHLKDIALGMQTEIEEQDDILDRLTTKVDKLDVNIKSTEKKVR 258
>sp|Q9Z2P6|SNP29_RAT Synaptosomal-associated protein 29 OS=Rattus norvegicus GN=Snap29
PE=1 SV=1
Length = 257
Score = 37.4 bits (85), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 35/56 (62%)
Query: 175 KQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLK 230
K D LD +S GL LK++A M E++ Q ++D + TKVD+ ++K+T +++
Sbjct: 200 KIDSNLDELSVGLGRLKDIALGMQTEIEEQDDILDRLTTKVDKLDVNIKSTEKKVR 255
>sp|Q00174|LAMA_DROME Laminin subunit alpha OS=Drosophila melanogaster GN=LanA PE=1 SV=2
Length = 3712
Score = 36.6 bits (83), Expect = 0.18, Method: Composition-based stats.
Identities = 48/227 (21%), Positives = 98/227 (43%), Gaps = 31/227 (13%)
Query: 8 TRVDSICKKYDKY--DVEKQRETNVSGDDAFARLYGAVEADIEAALQKAESASNEKNRAS 65
T + +I YD+ ++ +E S + L A I+AAL++A+ + N S
Sbjct: 2211 TTLGNITVAYDEAVKSADQAKEAIASVEALSKNLEAAASTKIDAALEQAQHILGQINGTS 2270
Query: 66 V-VALNAEIRRTKARLLEEVPKLQRLAIKKVKGLSTEELVARNDLVLALPDRIQAIPDGT 124
+ + N ++ +L EEV L + +K + +ND + D ++ + + +
Sbjct: 2271 IELTPNEQVLEKARKLYEEVNTL----VLPIKAQNKSLNALKND-IGEFSDHLEDLFNWS 2325
Query: 125 AAAPKQSGGWGASASRTEIKFDSDGRFDDEYFQQTEESSQFRQEYEMRKMKQDQG----- 179
A+ +S A R + + FD+ F E Q+ + K +D G
Sbjct: 2326 EASQAKS----ADVERRNVA--NQKAFDNSKFDTVSE-----QKLQAEKNIKDAGNFLIN 2374
Query: 180 ----LDMISEGLDTLKNMAHDM---NEEVDRQVPLMDEIDTKVDRAT 219
L+ I++ LD L++ +++ N+ VD ++P+ ++ + D T
Sbjct: 2375 GDLTLNQINQKLDNLRDALNELNSFNKNVDEELPVREDQHKEADALT 2421
>sp|Q553P5|STX8A_DICDI Syntaxin-8A OS=Dictyostelium discoideum GN=syn8A PE=1 SV=1
Length = 152
Score = 36.2 bits (82), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 175 KQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVT 234
+QD+ LD +S + +K+ A +N+ Q ++DE+D VD +A ++NT L T+T
Sbjct: 65 EQDKMLDALSGSISRVKDTAITINKTAQEQTDMLDELDVHVDSTSARMRNTTKNL-ITLT 123
Query: 235 Q 235
Q
Sbjct: 124 Q 124
>sp|Q9YA91|METE_AERPE Probable methylcobalamin:homocysteine methyltransferase
OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 /
JCM 9820 / NBRC 100138 / K1) GN=metE PE=3 SV=1
Length = 332
Score = 35.4 bits (80), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 10/79 (12%)
Query: 154 EYFQQTEE---SSQFRQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDE 210
EY Q E + F++E E+ K + LD+I +G+ K + H E++R +P +
Sbjct: 178 EYIQVDEPALSTRPFKEEAELLK----EALDIIFKGVGA-KRIVHICYGELERILPYI-- 230
Query: 211 IDTKVDRATADLKNTNVRL 229
+D VD+ ++KN+N RL
Sbjct: 231 LDYPVDQFDLEMKNSNFRL 249
>sp|Q9SD96|SNP29_ARATH SNAP25 homologous protein SNAP29 OS=Arabidopsis thaliana GN=SNAP29
PE=2 SV=1
Length = 251
Score = 35.4 bits (80), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%)
Query: 175 KQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKH 231
KQD+ L +S L LKNMA DM ++RQ +D + D +K +N R ++
Sbjct: 191 KQDEALTDLSALLGELKNMAVDMGTAIERQTNELDHLQDNADELNYRVKQSNQRARY 247
>sp|Q946Y7|SYP61_ARATH Syntaxin-61 OS=Arabidopsis thaliana GN=SYP61 PE=1 SV=1
Length = 245
Score = 34.7 bits (78), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 59/130 (45%), Gaps = 15/130 (11%)
Query: 97 GLSTEELVARNDLVLALPDRIQAIPDGTAAAPKQSGGWGASASRTEI----------KFD 146
G+ EL R +++ + G A SG AS R E+ ++D
Sbjct: 75 GIDEAELEKRRRWTSNARTQVRNVKSGVLAGKVSSGAGHASEVRRELMRMPNSGEASRYD 134
Query: 147 SDGRFDDEYFQQTEESSQFRQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVP 206
G DD+ F Q+E Q + +QD+ LD +S+ + + + +++E+ Q
Sbjct: 135 QYGGRDDDGFVQSESDRQM-----LLIKQQDEELDELSKSVQRIGGVGLTIHDELVAQER 189
Query: 207 LMDEIDTKVD 216
++DE+DT++D
Sbjct: 190 IIDELDTEMD 199
>sp|P83351|SNA29_CAEEL Soluable nsf attachment protein 29 OS=Caenorhabditis elegans
GN=snap-29 PE=3 SV=1
Length = 277
Score = 34.7 bits (78), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 177 DQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDR 217
D+ LDM+S L L+ + D+ +EVD Q ++D I K +R
Sbjct: 186 DENLDMMSANLRNLQRLGADLGKEVDSQNEMLDRIQYKAER 226
>sp|Q6P6S0|SNP47_RAT Synaptosomal-associated protein 47 OS=Rattus norvegicus GN=Snap47
PE=2 SV=1
Length = 419
Score = 34.3 bits (77), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 158 QTEESSQFRQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDR 217
Q + SQ ++++ + + Q L I L LK +A D E++RQ +D I VDR
Sbjct: 347 QEGQQSQLQKDWPLLSEGEAQELTQI---LSKLKGLALDTEAELERQDAALDGITVAVDR 403
Query: 218 ATADLKNTNVRLK 230
AT + N R++
Sbjct: 404 ATLTVDKHNRRMR 416
>sp|Q94KK7|SYP52_ARATH Syntaxin-52 OS=Arabidopsis thaliana GN=SYP52 PE=1 SV=1
Length = 233
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 84/167 (50%), Gaps = 19/167 (11%)
Query: 59 NEKNRASVVALNAE-----IRRTKARLLEEVPKLQRLAIKKVKG---LSTEELVARNDLV 110
+E+N + + +A+ IRR L + LQ L +K V G +S +E+ R D+V
Sbjct: 27 SERNASGLTGPDAQRRASAIRRKITILGTRLDSLQSLLVK-VPGKQHVSEKEMNRRKDMV 85
Query: 111 LALPDRIQAIPDGTAAAPKQSGGWGASASRTEIKFDSDGRFDDEYFQQTEESSQFRQEYE 170
L + + A+A S A+R + F +D + DD + + +Q ++
Sbjct: 86 GNLRSKTNQV----ASALNMSN----FANRDSL-FGTDLKPDDAINRVSGMDNQGIVVFQ 136
Query: 171 MRKMK-QDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVD 216
+ M+ QD+GL+ + E + + K++A +NEE+ Q L+D++D VD
Sbjct: 137 RQVMREQDEGLEKLEETVMSTKHIALAVNEELTLQTRLIDDLDYDVD 183
>sp|Q0II86|SNP29_BOVIN Synaptosomal-associated protein 29 OS=Bos taurus GN=SNAP29 PE=2
SV=1
Length = 258
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 162 SSQFRQEYEMRKMKQ--DQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRAT 219
S + + +R Q D LD +S GL LK++A + E+D Q ++D + +KVD+
Sbjct: 186 SEAYPRNPHLRACHQRIDSNLDELSVGLGRLKDIALGIQTEIDEQDDILDRLTSKVDKLD 245
Query: 220 ADLKNTNVRLKH 231
+ +T +++
Sbjct: 246 VSITSTERKVRQ 257
>sp|Q61043|NIN_MOUSE Ninein OS=Mus musculus GN=Nin PE=2 SV=3
Length = 2035
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 92/191 (48%), Gaps = 16/191 (8%)
Query: 6 ILTRVDSICKKYDKY--DVEKQRETNVSGDDAFARLYGAVEADIEAALQKAESASNEKNR 63
+L RVD + ++ +K D++K + + A+E E L+K +E+ +
Sbjct: 372 LLERVDQVVREKEKLRSDLDKAEKLKSLMASEVDDHHAAIERRNEYNLRKL----DEEYK 427
Query: 64 ASVVALNAEIRRTKARLLEEVPKLQRLAI-KKVKGLSTEELVARNDLVLALPD----RIQ 118
+ AL E+R+ + ++L++V K QR+ + ++++ TEE R+ L L+L + +
Sbjct: 428 ERIAALKNELRQEREQMLQQVGK-QRVELEQEIQKAKTEENYIRDRLALSLKENNRLETE 486
Query: 119 AIPDGTAAAPKQSGGWGASASRTEIKFDSDGRFDD---EYFQQTEESSQFRQEYEMR-KM 174
+ + A +S S + + G D E+F Q E +Q R EYE + ++
Sbjct: 487 LLENAEKLAEYESLTQKLQRSLENVLAEKFGDLDPSSAEFFLQEERLAQMRNEYEQQCRL 546
Query: 175 KQDQGLDMISE 185
QDQ ++ SE
Sbjct: 547 LQDQVDELQSE 557
>sp|Q8R570|SNP47_MOUSE Synaptosomal-associated protein 47 OS=Mus musculus GN=Snap47 PE=1
SV=1
Length = 413
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 170 EMRKMKQDQGLDMISEG--------LDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATAD 221
E +++ + L + SEG L +K +A D E++RQ +D I VDRAT +
Sbjct: 342 EGEQLQLQKNLPLFSEGEAQELTQILSKMKGLALDTEAELERQDAALDGITVAVDRATLN 401
Query: 222 LKNTNVRLK 230
+ N R++
Sbjct: 402 VDKQNRRMR 410
>sp|Q9JKK1|STX6_MOUSE Syntaxin-6 OS=Mus musculus GN=Stx6 PE=1 SV=1
Length = 255
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/99 (20%), Positives = 50/99 (50%), Gaps = 5/99 (5%)
Query: 131 SGGWGASASRTEIKFDSDGRFDDEYFQQTEESSQFRQEYEMRKMKQDQGLDMISEGLDTL 190
S W A + + D + + + +F + +++ Q ++ +QD+ L+++S + L
Sbjct: 129 SQSWNAGVADRYGRLDRELQLANSHFIEEQQAQQ-----QLIVEQQDEQLELVSGSIGVL 183
Query: 191 KNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRL 229
KNM+ + E++ Q ++D+ +++ + L N +L
Sbjct: 184 KNMSQRIGGELEEQAVMLDDFSHELESTQSRLDNVMKKL 222
>sp|Q5ZL19|STX6_CHICK Syntaxin-6 OS=Gallus gallus GN=STX6 PE=2 SV=1
Length = 254
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 32/55 (58%)
Query: 175 KQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRL 229
+QD+ L+++S + LKNM+ + E++ Q ++D+ ++D + L N +L
Sbjct: 167 QQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLDDFSHELDSTHSRLDNVMKKL 221
>sp|O60499|STX10_HUMAN Syntaxin-10 OS=Homo sapiens GN=STX10 PE=1 SV=1
Length = 249
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 27/43 (62%)
Query: 175 KQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDR 217
+QDQ L+M+S + LK+M+ + EE+D Q ++D ++D
Sbjct: 162 EQDQQLEMVSGSIQVLKHMSGRVGEELDEQGIMLDAFAQEMDH 204
>sp|Q63635|STX6_RAT Syntaxin-6 OS=Rattus norvegicus GN=Stx6 PE=1 SV=1
Length = 255
Score = 32.3 bits (72), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/99 (20%), Positives = 50/99 (50%), Gaps = 5/99 (5%)
Query: 131 SGGWGASASRTEIKFDSDGRFDDEYFQQTEESSQFRQEYEMRKMKQDQGLDMISEGLDTL 190
S W A + + D + + + +F + +++ Q ++ +QD+ L+++S + L
Sbjct: 129 SQNWDAGVTDRYGRLDRELQLANSHFIEEQQAQQ-----QLIVEQQDEQLELVSGSIGVL 183
Query: 191 KNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRL 229
KNM+ + E++ Q ++D+ +++ + L N +L
Sbjct: 184 KNMSQRIGGELEEQAVMLDDFSHELESTQSRLDNVMKKL 222
>sp|Q9SA23|SYP51_ARATH Syntaxin-51 OS=Arabidopsis thaliana GN=SYP51 PE=1 SV=1
Length = 232
Score = 32.0 bits (71), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 148 DGRFDDEYFQQTEESSQFRQEYEMRKMK-QDQGLDMISEGLDTLKNMAHDMNEEVDRQVP 206
D + DD + T +Q Y+ + M+ QD+GL+ + + + K++A ++EE+D Q
Sbjct: 113 DIKPDDSMSRVTGMDNQGIVGYQRQVMREQDEGLEQLEGTVMSTKHIALAVSEELDLQTR 172
Query: 207 LMDEIDTKVD 216
L+D++D VD
Sbjct: 173 LIDDLDYHVD 182
>sp|Q979F5|RPOA2_THEVO DNA-directed RNA polymerase subunit A'' OS=Thermoplasma volcanium
(strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 /
GSS1) GN=rpoA2 PE=3 SV=1
Length = 508
Score = 31.6 bits (70), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 143 IKFDSDGRFDDE---YFQQTEESSQFRQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNE 199
++F S G+ DE Y E+++ R++YE K Q LD+I+E N+ + E
Sbjct: 88 MEFRSSGKRIDELLTYAIAERETAEIREKYEYEKKVSSQVLDVIAEAKKLGYNIPESVAE 147
Query: 200 EVDRQ 204
E+ R+
Sbjct: 148 EILRR 152
>sp|A6QP11|SNP47_BOVIN Synaptosomal-associated protein 47 OS=Bos taurus GN=SNAP47 PE=1
SV=1
Length = 420
Score = 30.8 bits (68), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 187 LDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLK 230
L LK +A D E++RQ +D I VDRAT + N R+K
Sbjct: 374 LRKLKGLALDTETELERQDEALDGITEAVDRATLTIDKHNRRMK 417
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.128 0.343
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,967,603
Number of Sequences: 539616
Number of extensions: 3044649
Number of successful extensions: 11735
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 136
Number of HSP's that attempted gapping in prelim test: 11592
Number of HSP's gapped (non-prelim): 273
length of query: 241
length of database: 191,569,459
effective HSP length: 114
effective length of query: 127
effective length of database: 130,053,235
effective search space: 16516760845
effective search space used: 16516760845
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)