Query 026244
Match_columns 241
No_of_seqs 210 out of 650
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 05:29:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026244.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026244hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3202 SNARE protein TLG1/Syn 99.9 5.4E-25 1.2E-29 190.4 23.6 202 30-238 2-211 (235)
2 PF05739 SNARE: SNARE domain; 99.4 2.9E-12 6.2E-17 89.3 9.3 62 175-236 1-62 (63)
3 KOG3065 SNAP-25 (synaptosome-a 99.2 6.4E-11 1.4E-15 105.1 7.1 62 172-233 212-273 (273)
4 smart00397 t_SNARE Helical reg 99.1 5.3E-10 1.2E-14 77.6 7.8 62 170-231 4-65 (66)
5 cd00193 t_SNARE Soluble NSF (N 99.1 4.1E-10 8.9E-15 76.9 7.0 58 174-231 2-59 (60)
6 PF09177 Syntaxin-6_N: Syntaxi 99.0 1.3E-08 2.8E-13 77.3 11.5 88 34-121 1-97 (97)
7 KOG3385 V-SNARE [Intracellular 98.4 4.6E-07 9.9E-12 70.0 6.1 62 174-235 32-93 (118)
8 KOG0812 SNARE protein SED5/Syn 97.2 0.14 3.1E-06 45.9 22.2 235 1-239 1-288 (311)
9 KOG0811 SNARE protein PEP12/VA 96.9 0.28 6E-06 43.9 20.4 69 170-238 172-240 (269)
10 KOG0810 SNARE protein Syntaxin 96.6 0.2 4.2E-06 45.5 16.8 59 178-236 206-264 (297)
11 PF12352 V-SNARE_C: Snare regi 96.0 0.13 2.9E-06 35.6 9.8 61 175-235 5-65 (66)
12 PF09753 Use1: Membrane fusion 95.5 0.15 3.3E-06 44.9 10.1 73 164-236 153-225 (251)
13 KOG0809 SNARE protein TLG2/Syn 95.4 1.4 3.1E-05 39.7 16.0 196 35-234 58-274 (305)
14 COG5325 t-SNARE complex subuni 95.3 0.12 2.7E-06 46.0 8.9 66 172-237 189-254 (283)
15 COG5074 t-SNARE complex subuni 92.4 0.54 1.2E-05 41.1 7.1 62 178-239 185-246 (280)
16 KOG3208 SNARE protein GS28 [In 92.1 7.6 0.00016 33.8 14.3 59 178-236 149-207 (231)
17 KOG3251 Golgi SNAP receptor co 91.1 8.8 0.00019 33.2 13.0 158 65-237 30-188 (213)
18 PF01519 DUF16: Protein of unk 86.2 5.3 0.00012 30.5 7.4 50 175-224 50-99 (102)
19 PF07889 DUF1664: Protein of u 80.7 27 0.00058 27.8 10.2 61 172-232 62-122 (126)
20 PF00804 Syntaxin: Syntaxin; 78.2 23 0.0005 25.6 11.2 87 34-120 3-102 (103)
21 PRK11637 AmiB activator; Provi 78.0 63 0.0014 30.5 16.8 49 173-221 186-234 (428)
22 smart00503 SynN Syntaxin N-ter 77.4 28 0.0006 26.1 8.9 90 34-124 4-105 (117)
23 cd00179 SynN Syntaxin N-termin 76.7 29 0.00064 27.4 9.2 91 34-125 2-105 (151)
24 PF07730 HisKA_3: Histidine ki 75.8 17 0.00038 24.5 6.7 58 181-241 11-68 (68)
25 PF05531 NPV_P10: Nucleopolyhe 66.5 28 0.00062 25.1 6.1 55 168-222 8-65 (75)
26 PF03670 UPF0184: Uncharacteri 64.4 23 0.0005 26.1 5.3 20 173-192 28-47 (83)
27 KOG3894 SNARE protein Syntaxin 62.7 81 0.0018 28.9 9.6 65 172-236 226-290 (316)
28 KOG2678 Predicted membrane pro 62.3 97 0.0021 27.2 9.6 64 174-237 151-214 (244)
29 cd00179 SynN Syntaxin N-termin 60.2 69 0.0015 25.1 8.1 59 175-233 10-68 (151)
30 PRK04654 sec-independent trans 59.6 63 0.0014 28.0 8.0 54 180-234 29-82 (214)
31 PF05008 V-SNARE: Vesicle tran 57.4 64 0.0014 22.6 9.3 26 97-122 50-75 (79)
32 KOG1666 V-SNARE [Intracellular 57.2 1.3E+02 0.0028 26.1 18.7 183 34-231 6-188 (220)
33 PF04102 SlyX: SlyX; InterPro 55.7 65 0.0014 22.5 6.3 47 179-225 5-51 (69)
34 PHA03386 P10 fibrous body prot 55.7 50 0.0011 24.8 5.9 51 168-222 9-59 (94)
35 PF04728 LPP: Lipoprotein leuc 54.6 66 0.0014 21.9 7.3 50 180-236 5-54 (56)
36 PRK00846 hypothetical protein; 54.1 82 0.0018 22.8 7.3 50 176-225 11-60 (77)
37 PF01519 DUF16: Protein of unk 53.7 99 0.0022 23.7 8.3 60 175-234 34-95 (102)
38 PRK09973 putative outer membra 52.7 80 0.0017 23.4 6.5 36 177-212 37-72 (85)
39 KOG3647 Predicted coiled-coil 52.7 1.8E+02 0.0039 26.3 12.3 97 24-122 36-161 (338)
40 PF10498 IFT57: Intra-flagella 50.1 1.8E+02 0.004 27.1 10.1 51 71-121 297-348 (359)
41 KOG3650 Predicted coiled-coil 49.9 64 0.0014 24.6 5.8 47 193-240 58-107 (120)
42 PRK11637 AmiB activator; Provi 48.3 2.1E+02 0.0045 27.0 10.5 60 177-236 74-133 (428)
43 PF07432 Hc1: Histone H1-like 46.8 56 0.0012 25.7 5.1 51 183-240 2-52 (123)
44 PF06009 Laminin_II: Laminin D 45.7 6.9 0.00015 31.3 0.0 29 175-203 49-77 (138)
45 COG3883 Uncharacterized protei 45.4 1.9E+02 0.004 26.0 8.9 30 202-231 76-105 (265)
46 PRK02119 hypothetical protein; 44.9 1.1E+02 0.0024 21.7 7.1 45 178-222 9-53 (73)
47 PHA03395 p10 fibrous body prot 43.5 96 0.0021 23.1 5.7 54 168-221 8-64 (87)
48 PF04859 DUF641: Plant protein 43.4 1.7E+02 0.0037 23.4 7.9 24 100-123 100-123 (131)
49 COG4768 Uncharacterized protei 43.3 1.1E+02 0.0025 24.5 6.5 48 172-219 25-76 (139)
50 PRK01919 tatB sec-independent 42.4 1.9E+02 0.0041 24.2 8.0 25 181-205 30-54 (169)
51 KOG3065 SNAP-25 (synaptosome-a 41.8 2.6E+02 0.0057 25.1 9.5 63 172-234 70-135 (273)
52 PF12495 Vip3A_N: Vegetative i 41.8 1.2E+02 0.0026 24.2 6.4 67 170-236 44-117 (177)
53 PF10046 BLOC1_2: Biogenesis o 41.7 1.5E+02 0.0032 22.2 8.7 61 173-237 37-97 (99)
54 PF04102 SlyX: SlyX; InterPro 41.5 83 0.0018 22.0 5.0 38 171-208 11-48 (69)
55 PRK00736 hypothetical protein; 39.8 1.3E+02 0.0028 21.0 7.0 44 180-223 7-50 (68)
56 PRK02793 phi X174 lysis protei 39.5 1E+02 0.0022 21.9 5.3 17 173-189 17-33 (72)
57 PRK00736 hypothetical protein; 39.5 1E+02 0.0022 21.6 5.2 25 170-194 11-35 (68)
58 PF11559 ADIP: Afadin- and alp 39.2 2E+02 0.0042 22.9 10.1 39 78-117 111-149 (151)
59 PF03908 Sec20: Sec20; InterP 38.5 1.6E+02 0.0034 21.6 9.1 58 179-236 9-66 (92)
60 PRK15396 murein lipoprotein; P 36.3 1.7E+02 0.0036 21.3 6.6 30 180-209 41-70 (78)
61 PRK04325 hypothetical protein; 36.3 1.2E+02 0.0026 21.6 5.2 42 181-222 12-53 (74)
62 PF14712 Snapin_Pallidin: Snap 35.0 1.7E+02 0.0037 21.1 9.8 68 165-232 19-90 (92)
63 PRK04406 hypothetical protein; 34.6 1.7E+02 0.0037 20.9 7.7 46 178-223 11-56 (75)
64 PF08826 DMPK_coil: DMPK coile 34.2 1.6E+02 0.0034 20.4 6.1 51 69-120 6-58 (61)
65 PRK00295 hypothetical protein; 33.5 1.3E+02 0.0029 21.0 5.0 45 180-224 7-51 (68)
66 PF03915 AIP3: Actin interacti 33.3 4.4E+02 0.0096 25.3 13.3 25 99-123 244-268 (424)
67 PRK00846 hypothetical protein; 33.2 1.4E+02 0.003 21.7 5.1 32 170-201 19-50 (77)
68 PF10168 Nup88: Nuclear pore c 33.1 5.4E+02 0.012 26.4 11.2 54 173-226 553-606 (717)
69 PF05335 DUF745: Protein of un 32.9 3.1E+02 0.0066 23.3 9.8 63 170-232 108-170 (188)
70 cd00238 ERp29c ERp29 and ERp38 32.8 2.1E+02 0.0045 21.3 7.0 35 75-111 54-91 (93)
71 PRK01770 sec-independent trans 32.2 3E+02 0.0066 23.0 8.1 36 180-216 29-64 (171)
72 PRK00708 sec-independent trans 31.7 3.4E+02 0.0074 23.5 8.5 22 182-203 31-52 (209)
73 PF09728 Taxilin: Myosin-like 31.7 4E+02 0.0087 24.2 21.9 57 70-126 69-125 (309)
74 PRK02119 hypothetical protein; 31.2 1.7E+02 0.0036 20.8 5.3 32 170-201 15-46 (73)
75 PF08614 ATG16: Autophagy prot 30.5 3.2E+02 0.0069 22.8 8.7 64 170-233 108-171 (194)
76 PRK02793 phi X174 lysis protei 30.1 2E+02 0.0044 20.3 7.0 48 177-224 7-54 (72)
77 KOG0994 Extracellular matrix g 30.1 7.9E+02 0.017 27.2 12.2 116 3-125 1173-1291(1758)
78 KOG2150 CCR4-NOT transcription 30.0 5.7E+02 0.012 25.5 10.9 85 38-122 42-143 (575)
79 PRK04325 hypothetical protein; 30.0 2.1E+02 0.0044 20.4 7.2 31 170-200 15-45 (74)
80 smart00503 SynN Syntaxin N-ter 29.4 2.3E+02 0.0051 20.9 8.2 58 175-232 12-69 (117)
81 PF10669 Phage_Gp23: Protein g 29.0 1.3E+02 0.0028 23.0 4.5 29 165-193 83-111 (121)
82 COG5185 HEC1 Protein involved 28.9 5.7E+02 0.012 25.1 17.7 158 35-224 261-435 (622)
83 PRK00295 hypothetical protein; 28.8 2.1E+02 0.0045 20.0 7.1 23 171-193 12-34 (68)
84 PF08650 DASH_Dad4: DASH compl 28.7 1.6E+02 0.0035 21.1 4.8 26 177-202 10-35 (72)
85 PF07106 TBPIP: Tat binding pr 28.6 3.2E+02 0.0069 22.1 9.8 36 70-105 111-149 (169)
86 PF12108 SF3a60_bindingd: Spli 28.3 57 0.0012 19.0 2.0 14 30-43 3-16 (28)
87 KOG0250 DNA repair protein RAD 27.8 8E+02 0.017 26.5 22.7 51 180-230 374-425 (1074)
88 PF05615 THOC7: Tho complex su 27.7 3E+02 0.0065 21.5 11.8 84 9-92 17-105 (139)
89 PF05791 Bacillus_HBL: Bacillu 27.3 3.6E+02 0.0079 22.4 8.8 59 176-234 101-159 (184)
90 PRK00404 tatB sec-independent 26.2 3.5E+02 0.0077 21.9 7.2 37 180-217 29-65 (141)
91 PF14523 Syntaxin_2: Syntaxin- 26.2 2.6E+02 0.0056 20.3 6.3 52 180-232 5-56 (102)
92 PF08580 KAR9: Yeast cortical 25.1 4.8E+02 0.01 26.6 9.2 50 5-54 239-288 (683)
93 PRK13677 hypothetical protein; 23.9 2.7E+02 0.0059 22.0 5.6 45 186-230 79-123 (125)
94 PF13747 DUF4164: Domain of un 23.7 3E+02 0.0066 20.2 8.5 55 180-234 34-88 (89)
95 PF03670 UPF0184: Uncharacteri 23.7 3E+02 0.0066 20.2 5.8 35 202-236 29-63 (83)
96 PF05008 V-SNARE: Vesicle tran 23.6 2.6E+02 0.0056 19.4 10.2 73 10-91 5-77 (79)
97 PF00957 Synaptobrevin: Synapt 23.6 2.8E+02 0.0061 19.8 8.8 16 203-218 28-43 (89)
98 PF00261 Tropomyosin: Tropomyo 23.4 3.8E+02 0.0082 23.1 7.3 56 178-233 15-70 (237)
99 PF11945 WASH_WAHD: WAHD domai 23.3 4.7E+02 0.01 23.8 8.0 22 211-232 48-69 (297)
100 PRK15344 type III secretion sy 23.0 1.2E+02 0.0026 21.6 3.3 25 182-206 2-26 (71)
101 smart00502 BBC B-Box C-termina 22.3 3.2E+02 0.007 20.0 8.2 35 204-238 59-93 (127)
102 PF02994 Transposase_22: L1 tr 22.0 2.3E+02 0.005 26.4 5.9 31 197-227 142-172 (370)
103 PF05103 DivIVA: DivIVA protei 21.1 1.2E+02 0.0026 23.2 3.3 59 175-233 22-80 (131)
104 COG2739 Uncharacterized protei 21.0 88 0.0019 24.0 2.3 17 2-18 49-65 (105)
105 PRK01773 hscB co-chaperone Hsc 20.7 4.9E+02 0.011 21.5 10.9 106 5-124 64-170 (173)
106 PF11221 Med21: Subunit 21 of 20.7 2.4E+02 0.0053 22.5 5.1 38 201-238 99-136 (144)
107 PF07195 FliD_C: Flagellar hoo 20.6 4.6E+02 0.01 22.5 7.2 65 174-238 174-239 (239)
108 PRK04778 septation ring format 20.5 8.3E+02 0.018 24.1 20.7 48 4-51 211-269 (569)
109 PF12128 DUF3584: Protein of u 20.2 1.1E+03 0.025 25.5 19.0 199 9-229 328-534 (1201)
110 PF00261 Tropomyosin: Tropomyo 20.1 5.7E+02 0.012 22.0 9.8 67 170-236 84-150 (237)
111 PF00015 MCPsignal: Methyl-acc 20.0 4.8E+02 0.01 21.1 10.2 55 177-231 134-188 (213)
112 PF07889 DUF1664: Protein of u 20.0 4.5E+02 0.0097 20.8 8.4 33 185-217 89-121 (126)
No 1
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=5.4e-25 Score=190.43 Aligned_cols=202 Identities=22% Similarity=0.275 Sum_probs=143.8
Q ss_pred CCCCChHHHHHHHHHHH---HHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHhhHhHHHHHHHHH--hcCCCHHHHH
Q 026244 30 VSGDDAFARLYGAVEAD---IEAALQKAESASNEKNRASVVALNAEIRRTKARLLEEVPKLQRLAIKK--VKGLSTEELV 104 (241)
Q Consensus 30 ~~~~DpF~~~~~d~~~~---l~~~~~~~~~~~~~~n~~~~~~~~~eir~~l~~L~e~l~~L~~~l~~~--~~~l~~~E~~ 104 (241)
.+..|||.++|.++... +..+.++..++... ..+........||+.+..+.++|..+...+.+. .++++..|+.
T Consensus 2 ~~~~Dp~~~v~~e~~k~~~~~~~~~~r~~~~~~~-~~~~~~~~t~~lr~~i~~~~edl~~~~~il~~~~~~~~ide~El~ 80 (235)
T KOG3202|consen 2 LSSEDPFFRVKNETLKLSEEIQGLYQRRSELLKD-TGSDAEELTSVLRRSIEEDLEDLDELISILERNPSKFGIDEFELS 80 (235)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccchhHHHHHHHHHHhHHHHHHHHHHHHHHHhCcccccCcHHHHH
Confidence 46789999999997754 44444444332211 134455667888877777777777776665433 3579999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhccCCCCCCCCCCCCCccccccCCCCCC-Cchhh-hcchh-hHHHHHHHHHHHHhhhhhHH
Q 026244 105 ARNDLVLALPDRIQAIPDGTAAAPKQSGGWGASASRTEIKFDSDGRF-DDEYF-QQTEE-SSQFRQEYEMRKMKQDQGLD 181 (241)
Q Consensus 105 rR~~~v~~L~~~i~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~-~~te~-t~~~~q~~qq~~~eQD~~Ld 181 (241)
+|+.+|.+++.++.+|+..+....-.+ ...+..+.....++. ..... ..... .+...+.|++++++||++||
T Consensus 81 ~R~~~i~~lr~q~~~~~~~~~~~~~~~-----~~~r~~l~~~~~~~~~~~~~~~~~~~D~v~~~~~~qqqm~~eQDe~Ld 155 (235)
T KOG3202|consen 81 RRRRFIDNLRTQLRQMKSKMAMSGFAN-----SNIRDILLGPEKSPNLDEAMSRASGLDNVQEIVQLQQQMLQEQDEGLD 155 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccc-----ccchhhhcCCCCCCchhhhHHHhhccCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999886511000 011222221111110 00010 11111 23344666889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHHHHhcc
Q 026244 182 MISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQVMT 238 (241)
Q Consensus 182 ~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~k~r~ 238 (241)
.|+.+|+++|+||..||+||++|+.|||++++.||+|.+||+++++++.++.. +.+
T Consensus 156 ~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~-~~s 211 (235)
T KOG3202|consen 156 GLSATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNR-MAS 211 (235)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhc
Confidence 99999999999999999999999999999999999999999999999999998 654
No 2
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=99.39 E-value=2.9e-12 Score=89.31 Aligned_cols=62 Identities=35% Similarity=0.597 Sum_probs=59.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHHHHh
Q 026244 175 KQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQV 236 (241)
Q Consensus 175 eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~k~ 236 (241)
+||+.|+.|+.+|.+|++|+..||.||++|+++||.|+..||.+..+|..++++|+++.+..
T Consensus 1 e~d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~~ 62 (63)
T PF05739_consen 1 ERDEELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKYQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 58999999999999999999999999999999999999999999999999999999998764
No 3
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=6.4e-11 Score=105.09 Aligned_cols=62 Identities=37% Similarity=0.483 Sum_probs=59.2
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHH
Q 026244 172 RKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTV 233 (241)
Q Consensus 172 ~~~eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l 233 (241)
.-.++|++|++|+.++++||+||.+||.||+.||+.||.|.++||+.+.+|..+|+|+++|+
T Consensus 212 ~edeiD~NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~~n~R~~kLl 273 (273)
T KOG3065|consen 212 AEDEIDENLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDKANKRAKKLL 273 (273)
T ss_pred hhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHHHHHHHHhcC
Confidence 34489999999999999999999999999999999999999999999999999999999975
No 4
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=99.09 E-value=5.3e-10 Score=77.59 Aligned_cols=62 Identities=31% Similarity=0.501 Sum_probs=59.6
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHH
Q 026244 170 EMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKH 231 (241)
Q Consensus 170 qq~~~eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~ 231 (241)
.+++.++|+.|+.|+.+|..+++++..||.||..|+++||.++..+|.+...+..+++++++
T Consensus 4 ~~~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l~~ 65 (66)
T smart00397 4 DQMEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRLKK 65 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 56789999999999999999999999999999999999999999999999999999999876
No 5
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=99.09 E-value=4.1e-10 Score=76.89 Aligned_cols=58 Identities=33% Similarity=0.548 Sum_probs=56.2
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHH
Q 026244 174 MKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKH 231 (241)
Q Consensus 174 ~eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~ 231 (241)
+++|+.|+.|+.+|..|++|+..||.||..|+++||.|+..||.+..++..+++++.+
T Consensus 2 ~e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~k 59 (60)
T cd00193 2 QERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLKK 59 (60)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999999999999999999999999999999976
No 6
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=98.96 E-value=1.3e-08 Score=77.27 Aligned_cols=88 Identities=17% Similarity=0.200 Sum_probs=71.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhhhhch----hhHHHHHHHHHHHHHHHHhhHhHHHHHHHHH-----hcCCCHHHHH
Q 026244 34 DAFARLYGAVEADIEAALQKAESASNEKNR----ASVVALNAEIRRTKARLLEEVPKLQRLAIKK-----VKGLSTEELV 104 (241)
Q Consensus 34 DpF~~~~~d~~~~l~~~~~~~~~~~~~~n~----~~~~~~~~eir~~l~~L~e~l~~L~~~l~~~-----~~~l~~~E~~ 104 (241)
|||..|..+|.+.|..+....+.....++. +.......+++..+..+..+|.+|++++... .++|++.|+.
T Consensus 1 DPF~~v~~ev~~sl~~l~~~~~~~~~~~~~~~~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~np~kF~l~~~Ei~ 80 (97)
T PF09177_consen 1 DPFFVVKDEVQSSLDRLESLYRRWQRLRSDTSSSEELKWLKRELRNALQSIEWDLEDLEEAVRIVEKNPSKFNLSEEEIS 80 (97)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHTTHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHT-HHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCHHHHH
Confidence 899999999999999987766665544433 3456678999999999999999999996422 3589999999
Q ss_pred HHHHHHHHHHHHHHhhh
Q 026244 105 ARNDLVLALPDRIQAIP 121 (241)
Q Consensus 105 rR~~~v~~L~~~i~~l~ 121 (241)
+|+.||..++.+|..|+
T Consensus 81 ~Rr~fv~~~~~~i~~~k 97 (97)
T PF09177_consen 81 RRRQFVSAIRNQIKQMK 97 (97)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 99999999999999874
No 7
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.45 E-value=4.6e-07 Score=70.04 Aligned_cols=62 Identities=24% Similarity=0.396 Sum_probs=58.9
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHHHH
Q 026244 174 MKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQ 235 (241)
Q Consensus 174 ~eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~k 235 (241)
+|=|+.++.|..-|..||.++..||+|++.||++||.+++++|.|.+.|..++.|++.+-+.
T Consensus 32 ~ENee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~ 93 (118)
T KOG3385|consen 32 RENEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARR 93 (118)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhc
Confidence 57788999999999999999999999999999999999999999999999999999988765
No 8
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.23 E-value=0.14 Score=45.87 Aligned_cols=235 Identities=17% Similarity=0.226 Sum_probs=136.6
Q ss_pred ChHHHHHHHHHHHHhhhhhcch-hhhhc------cCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhh-------chh-h
Q 026244 1 MSVIDILTRVDSICKKYDKYDV-EKQRE------TNVSGDDAFARLYGAVEADIEAALQKAESASNEK-------NRA-S 65 (241)
Q Consensus 1 ~~~~d~~~r~~~~~~k~~~~~~-~~~~~------~~~~~~DpF~~~~~d~~~~l~~~~~~~~~~~~~~-------n~~-~ 65 (241)
||..|=-.=..+.|+.|.+-.+ ...+. ...+..-.|.+.-.-+..+|..+-++++.++... ++| .
T Consensus 1 m~~rDRT~Ef~~~~~s~~~r~~~~~~~~~~p~~~~~~~~~seF~~~A~~Ig~~is~T~~kl~kLa~lAKrks~f~Dr~Ve 80 (311)
T KOG0812|consen 1 MSFRDRTSEFQAAVKSLKKRNATRGVNQADPGADKTVSQGSEFNKKASRIGKEISQTGAKLEKLAQLAKRKSLFDDRPVE 80 (311)
T ss_pred CCcchhhHHHHHHHHHHHHHhhccccccCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchh
Confidence 5555555556788999988432 11111 1123335799998888888888766554433221 244 4
Q ss_pred HHHHHHHHHHHHHHHHhhHhHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHhhhhhh--------------------
Q 026244 66 VVALNAEIRRTKARLLEEVPKLQRLAIKKVKGLSTEE-LVARNDLVLALPDRIQAIPDGT-------------------- 124 (241)
Q Consensus 66 ~~~~~~eir~~l~~L~e~l~~L~~~l~~~~~~l~~~E-~~rR~~~v~~L~~~i~~l~~~~-------------------- 124 (241)
+..+..-|+..+..|...|.+|.... +..+.++..- ..-=+..|-.|.+.+..+...+
T Consensus 81 I~eLT~iikqdi~sln~~i~~Lqei~-~~~gn~s~~~~~~Hs~~vV~~Lqs~la~is~~fk~VLE~Rtenmka~k~R~dk 159 (311)
T KOG0812|consen 81 IQELTFIIKQDITSLNSQIAQLQEIV-KANGNLSNKQLVQHSKNVVVSLQSKLANISKDFKDVLEIRTENMKAVKNRRDK 159 (311)
T ss_pred hHHHHHHHhcchHHHHHHHHHHHHHH-HHhccccchHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHH
Confidence 67788999999999999999998774 3444555321 2233445555555444432211
Q ss_pred -ccC-CCCCC-CCCCCCCccccc---cCCCCCCCch-hhh---cchhhHHHHHHHHHHHHhhhh-------hHHHHHHHH
Q 026244 125 -AAA-PKQSG-GWGASASRTEIK---FDSDGRFDDE-YFQ---QTEESSQFRQEYEMRKMKQDQ-------GLDMISEGL 187 (241)
Q Consensus 125 -~~~-~~~~~-~~~~~~~~~~l~---~~~~~~~~~~-~~~---~te~t~~~~q~~qq~~~eQD~-------~Ld~l~~~v 187 (241)
+.+ +.-++ ....+..+.... .+..+..... .+. +.+.++ +++-+++.++|+ .+..|+.+|
T Consensus 160 fs~~~a~~~a~p~~n~~a~~~~~~~l~~~~~~~sq~~~~ln~gd~~~~q---qqQm~ll~es~~Y~Q~R~~~~q~IEstI 236 (311)
T KOG0812|consen 160 FSASYASLNANPVSNSAARLHPLKLLVDPKDEASQDVESLNMGDSSNPQ---QQQMALLDESDEYVQERAKTMQNIESTI 236 (311)
T ss_pred hccccCCCCCcccCcccccCCchhhhcCchhhcccccccccccCCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 110 00000 000000011100 0000000000 000 011111 122233555554 456788889
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHHHHhccc
Q 026244 188 DTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQVMTF 239 (241)
Q Consensus 188 ~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~k~r~~ 239 (241)
..|.+|=..+-.=+.+|.+++..||+.||.+..-+..|..-|-+....+.|.
T Consensus 237 sElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vSSN 288 (311)
T KOG0812|consen 237 SELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVSSN 288 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999999999888653
No 9
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.93 E-value=0.28 Score=43.91 Aligned_cols=69 Identities=14% Similarity=0.252 Sum_probs=62.7
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHHHHhcc
Q 026244 170 EMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQVMT 238 (241)
Q Consensus 170 qq~~~eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~k~r~ 238 (241)
..++++-.+.+..|...|..+.+|=..+|.=+.+|.+++|.|+..|+.+...+..++..|.+-.+.=|+
T Consensus 172 ~~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~ 240 (269)
T KOG0811|consen 172 LDLIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRK 240 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446788899999999999999999999999999999999999999999999999999999987765433
No 10
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.63 E-value=0.2 Score=45.53 Aligned_cols=59 Identities=20% Similarity=0.294 Sum_probs=53.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHHHHh
Q 026244 178 QGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQV 236 (241)
Q Consensus 178 ~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~k~ 236 (241)
..+-.|..+|..|+++=.+|-..++.|.+|||+|+..|.++..-+..++..+++-+..-
T Consensus 206 ~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~q 264 (297)
T KOG0810|consen 206 DEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQ 264 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778999999999999999999999999999999999999999999999998665443
No 11
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=96.04 E-value=0.13 Score=35.63 Aligned_cols=61 Identities=16% Similarity=0.249 Sum_probs=54.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHHHH
Q 026244 175 KQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQ 235 (241)
Q Consensus 175 eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~k 235 (241)
+....|+.-...+...-++|..+-.+|..|.+.|..+..+++.+.+.|..+++-++.+-.+
T Consensus 5 ~e~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~rR 65 (66)
T PF12352_consen 5 RESDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRISRR 65 (66)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcc
Confidence 4455888888999999999999999999999999999999999999999999888877654
No 12
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=95.47 E-value=0.15 Score=44.90 Aligned_cols=73 Identities=15% Similarity=0.209 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHHHHh
Q 026244 164 QFRQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQV 236 (241)
Q Consensus 164 ~~~q~~qq~~~eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~k~ 236 (241)
.++...+.....|++--++|..-...||+.+.++++=|..-+.+|+.....+|+....|..++.||+....+.
T Consensus 153 ~~e~~l~~~~~~QE~L~~em~~La~~LK~~s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~ 225 (251)
T PF09753_consen 153 SLEKILQHHRNLQEDLTEEMLSLARQLKENSLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKS 225 (251)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333445557789999999999999999999999999999999999999999999999999999999986543
No 13
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.41 E-value=1.4 Score=39.68 Aligned_cols=196 Identities=16% Similarity=0.197 Sum_probs=114.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhh--hhhc-hhhHH---HHHHHHHHHHHHHHhhHhHHHHHHHH--Hh-cCCCHHHHHH
Q 026244 35 AFARLYGAVEADIEAALQKAESAS--NEKN-RASVV---ALNAEIRRTKARLLEEVPKLQRLAIK--KV-KGLSTEELVA 105 (241)
Q Consensus 35 pF~~~~~d~~~~l~~~~~~~~~~~--~~~n-~~~~~---~~~~eir~~l~~L~e~l~~L~~~l~~--~~-~~l~~~E~~r 105 (241)
.|..+..++...|..+..+++... +.++ .|+-. .-..+|...-..+...+.+=++.+.. ++ ...++.|.--
T Consensus 58 ~wvd~~~ev~~~l~rvrrk~~eLgk~~~Khl~PsF~Dk~ede~~IE~ltq~Itqll~~cqk~iq~~~a~~n~~~~~e~~~ 137 (305)
T KOG0809|consen 58 AWVDVAEEVDYYLSRVRRKIDELGKAHAKHLRPSFSDKREDEHEIEELTQEITQLLQKCQKLIQRLSASLNQLSPSERLL 137 (305)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHH
Confidence 477677777777777766654422 1222 22211 11244444444444444444444432 22 2368899999
Q ss_pred HHHHHHHHHHHHHhhhhhhccC--------CCCCC-C-CCCCCCccccccCCCCCCCchhhhcchhhHHHH--HHHHHHH
Q 026244 106 RNDLVLALPDRIQAIPDGTAAA--------PKQSG-G-WGASASRTEIKFDSDGRFDDEYFQQTEESSQFR--QEYEMRK 173 (241)
Q Consensus 106 R~~~v~~L~~~i~~l~~~~~~~--------~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~~~~te~t~~~~--q~~qq~~ 173 (241)
|+++...+-..+..+...|-.. .+... + ..-.+..+.+.. +...++...+....++. ..-..+.
T Consensus 138 ~~n~~~~la~~LQ~~s~~fR~~Qs~YLK~l~~~ee~~~~~e~~~~~~~~~----~dd~d~~~~~~qe~ql~~~e~~~~~~ 213 (305)
T KOG0809|consen 138 RKNAQGYLALQLQTLSREFRGLQSKYLKRLRNREENSQEYEDSLDNTVDL----PDDEDFSDRTFQEQQLMLFENNEEVV 213 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhcccchhhhccccccC----cchhhhhhhhHHHHHHHHHhcchHHH
Confidence 9999999988888886655321 00000 0 000000011000 00111111111111110 0011235
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHHH
Q 026244 174 MKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVT 234 (241)
Q Consensus 174 ~eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~ 234 (241)
.+-++..-.|.++|-.|-.|=.+|+.=+-+|+-++|.||-.|+.|..++..|.+.+.|.-.
T Consensus 214 ~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~ 274 (305)
T KOG0809|consen 214 REREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAER 274 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHH
Confidence 5668889999999999999999999999999999999999999999999999999987543
No 14
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=95.31 E-value=0.12 Score=46.01 Aligned_cols=66 Identities=23% Similarity=0.382 Sum_probs=61.2
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHHHHhc
Q 026244 172 RKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQVM 237 (241)
Q Consensus 172 ~~~eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~k~r 237 (241)
+..+-|+.+..|+.+|..|-.|=.+||.=+.+|+++.|.||-.++.|...+++|++.|.+...--|
T Consensus 189 l~~er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqr 254 (283)
T COG5325 189 LITERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQR 254 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHh
Confidence 477889999999999999999999999999999999999999999999999999999988765443
No 15
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=92.44 E-value=0.54 Score=41.13 Aligned_cols=62 Identities=23% Similarity=0.261 Sum_probs=57.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHHHHhccc
Q 026244 178 QGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQVMTF 239 (241)
Q Consensus 178 ~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~k~r~~ 239 (241)
+.|-.|..+|..|-++=..|.+++-+|.++.|-|++.+..+...+..++.-+.+-++.+|.+
T Consensus 185 ~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~AvksaRaa 246 (280)
T COG5074 185 QEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKSARAA 246 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHHHHHH
Confidence 34778999999999999999999999999999999999999999999999999999998865
No 16
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.06 E-value=7.6 Score=33.76 Aligned_cols=59 Identities=17% Similarity=0.205 Sum_probs=52.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHHHHh
Q 026244 178 QGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQV 236 (241)
Q Consensus 178 ~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~k~ 236 (241)
.+|+.-...|..+=.+|.+=-+-+..|+-+|..+..+|-.+..|+-..|.-+.++-.|=
T Consensus 149 ~~in~s~~~vde~Is~A~aTre~l~~Qrs~l~~i~~k~~~~a~r~P~IN~Ll~kIk~kk 207 (231)
T KOG3208|consen 149 DHINNSIRLVDELISQAQATRENLHSQRSVLGGINNKVNNIANRFPAINQLLQKIKIKK 207 (231)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 46777777888888899999999999999999999999999999999999888876654
No 17
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.09 E-value=8.8 Score=33.18 Aligned_cols=158 Identities=16% Similarity=0.177 Sum_probs=89.8
Q ss_pred hHHHHHHHHHHHHHHHHhhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCC-CCCCCCcccc
Q 026244 65 SVVALNAEIRRTKARLLEEVPKLQRLAIKKVKGLSTEELVARNDLVLALPDRIQAIPDGTAAAPKQSGG-WGASASRTEI 143 (241)
Q Consensus 65 ~~~~~~~eir~~l~~L~e~l~~L~~~l~~~~~~l~~~E~~rR~~~v~~L~~~i~~l~~~~~~~~~~~~~-~~~~~~~~~l 143 (241)
.+...-.+|.+.+.++.+-+..|...+. ....++..-.+++ +.+++.++..+..++....++... +.....+..+
T Consensus 30 e~~~v~~~i~~sI~~~~s~~~rl~~~~~--~epp~~rq~~rlr--~dQl~~d~~~l~~~l~~~~~R~~~r~~~~~er~~l 105 (213)
T KOG3251|consen 30 EVSAVENSIQRSIDQYASRCQRLDVLVS--KEPPKSRQAARLR--VDQLLEDVEHLQTSLRTSMNRNNRREQQARERVEL 105 (213)
T ss_pred chHHHHHHHHHhHHHHHHHHHHHHhHhh--cCCCCcHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4455667888888888888888877643 2345556666666 888888888887665432111100 0000012222
Q ss_pred ccCCCCCCCchhhhcchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHH
Q 026244 144 KFDSDGRFDDEYFQQTEESSQFRQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLK 223 (241)
Q Consensus 144 ~~~~~~~~~~~~~~~te~t~~~~q~~qq~~~eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~ 223 (241)
... ++.. .++..+.+|+.++ .-+..|..-+..|..+=.+|..|=+-|-+|+-.|-....+|-...+.|.
T Consensus 106 L~~---~~~~---~~~~~~~~~D~el-----~~~d~l~~s~~~lDd~l~~G~~ile~l~~Q~~~L~~~~~ki~~~~ntLG 174 (213)
T KOG3251|consen 106 LDR---RFTN---GATGTSIPFDEEL-----QENDSLKRSHNMLDDLLESGSAILENLVEQRLTLKGTQKKILDILNTLG 174 (213)
T ss_pred hcC---CCCC---CCccCCCcchHHH-----HhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 211 1111 0111122343222 2233455555666666677888888888888888888888877777776
Q ss_pred HHHHHHHHHHHHhc
Q 026244 224 NTNVRLKHTVTQVM 237 (241)
Q Consensus 224 ~~~~r~~~~l~k~r 237 (241)
-.|.-|.-|-+.+|
T Consensus 175 lSn~ti~lIeRR~~ 188 (213)
T KOG3251|consen 175 LSNQTIRLIERRVR 188 (213)
T ss_pred CcHHHHHHHHHHHH
Confidence 66665555544443
No 18
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=86.17 E-value=5.3 Score=30.52 Aligned_cols=50 Identities=14% Similarity=0.194 Sum_probs=39.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHH
Q 026244 175 KQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKN 224 (241)
Q Consensus 175 eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~ 224 (241)
.|-++++.|...|..+.+.=.....|++.|++.|+-|...+...+.||.+
T Consensus 50 ~qgeqI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkRLD~ 99 (102)
T PF01519_consen 50 AQGEQINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKRLDK 99 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 67788888888888888888888888888888888887777666666654
No 19
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=80.68 E-value=27 Score=27.77 Aligned_cols=61 Identities=18% Similarity=0.297 Sum_probs=49.7
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHH
Q 026244 172 RKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHT 232 (241)
Q Consensus 172 ~~~eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~ 232 (241)
..++.-+.||.+...+..+.++...|.+|+..=..=+..+..+++.++..+...-.|+..+
T Consensus 62 tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~i 122 (126)
T PF07889_consen 62 TKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEI 122 (126)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666778888888888888999999999988888888888888888888887777777655
No 20
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=78.24 E-value=23 Score=25.62 Aligned_cols=87 Identities=17% Similarity=0.242 Sum_probs=52.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhhhh-------c-----hhhHHHHHHHHHHHHHHHHhhHhHHHHHHH-HHhcCCCH
Q 026244 34 DAFARLYGAVEADIEAALQKAESASNEK-------N-----RASVVALNAEIRRTKARLLEEVPKLQRLAI-KKVKGLST 100 (241)
Q Consensus 34 DpF~~~~~d~~~~l~~~~~~~~~~~~~~-------n-----~~~~~~~~~eir~~l~~L~e~l~~L~~~l~-~~~~~l~~ 100 (241)
+.|.....++...|..+...+..+.... + +.....+..+|......+...|..|+.... ....+.+.
T Consensus 3 ~~f~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~~~~~~~~~~~ 82 (103)
T PF00804_consen 3 PEFFDEVQEIREDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDEIKQLFQKIKKRLKQLSKDNEDSEGEEPSS 82 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT--S
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCc
Confidence 4688888888877777654443322111 1 111233445555555566666666655532 12345778
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 026244 101 EELVARNDLVLALPDRIQAI 120 (241)
Q Consensus 101 ~E~~rR~~~v~~L~~~i~~l 120 (241)
.+..-|+..+..|..++.++
T Consensus 83 ~~~ri~~nq~~~L~~kf~~~ 102 (103)
T PF00804_consen 83 NEVRIRKNQVQALSKKFQEV 102 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999988764
No 21
>PRK11637 AmiB activator; Provisional
Probab=77.96 E-value=63 Score=30.50 Aligned_cols=49 Identities=4% Similarity=0.118 Sum_probs=33.6
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhH
Q 026244 173 KMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATAD 221 (241)
Q Consensus 173 ~~eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~ 221 (241)
.++....+..+...+..+...-..+..+..++...+..|..........
T Consensus 186 k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~ 234 (428)
T PRK11637 186 KAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQ 234 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666677777777777777777777777777777777666554333
No 22
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=77.39 E-value=28 Score=26.09 Aligned_cols=90 Identities=12% Similarity=0.174 Sum_probs=48.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhhhhchhh------------HHHHHHHHHHHHHHHHhhHhHHHHHHHHHhcCCCHH
Q 026244 34 DAFARLYGAVEADIEAALQKAESASNEKNRAS------------VVALNAEIRRTKARLLEEVPKLQRLAIKKVKGLSTE 101 (241)
Q Consensus 34 DpF~~~~~d~~~~l~~~~~~~~~~~~~~n~~~------------~~~~~~eir~~l~~L~e~l~~L~~~l~~~~~~l~~~ 101 (241)
..|.....+|...|..+...+..+........ ......++......+...|..|...... ....+..
T Consensus 4 ~~F~~~v~~I~~~I~~i~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~~~-~~~~~~~ 82 (117)
T smart00503 4 DEFFEKVEEIRANIQKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKLKELEKENLE-NRASGSA 82 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh-hcccCCH
Confidence 57888888888888777543333221111100 1122233333334444445555443221 1112445
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhh
Q 026244 102 ELVARNDLVLALPDRIQAIPDGT 124 (241)
Q Consensus 102 E~~rR~~~v~~L~~~i~~l~~~~ 124 (241)
+...|+..+..|..++..+...+
T Consensus 83 ~~r~~~~q~~~L~~~f~~~m~~f 105 (117)
T smart00503 83 SDRTRKAQTEKLRKKFKEVMNEF 105 (117)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Confidence 67888899999988887765544
No 23
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=76.68 E-value=29 Score=27.35 Aligned_cols=91 Identities=10% Similarity=0.148 Sum_probs=49.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhh-------hhhc-----hhhHHHHHHHHHHHHHHHHhhHhHHHHHHHHH-hcCCCH
Q 026244 34 DAFARLYGAVEADIEAALQKAESAS-------NEKN-----RASVVALNAEIRRTKARLLEEVPKLQRLAIKK-VKGLST 100 (241)
Q Consensus 34 DpF~~~~~d~~~~l~~~~~~~~~~~-------~~~n-----~~~~~~~~~eir~~l~~L~e~l~~L~~~l~~~-~~~l~~ 100 (241)
+.|.....+|...|..+...+..+. +..+ +.....+..++......+...|..|....... ... +.
T Consensus 2 ~~F~~~v~~I~~~i~~i~~~v~~l~~l~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~~~~~~~~-~s 80 (151)
T cd00179 2 EEFFEEVEEIRGNIDKISEDVEELQKLHSQLLTAPDADPELKQELESLVQEIKKLAKEIKGKLKELEESNEQNEALN-GS 80 (151)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-Cc
Confidence 3588888888877777643332221 1111 11122233444444445555555554432111 111 45
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhc
Q 026244 101 EELVARNDLVLALPDRIQAIPDGTA 125 (241)
Q Consensus 101 ~E~~rR~~~v~~L~~~i~~l~~~~~ 125 (241)
.+...|+..+..|..++..+...+.
T Consensus 81 ~~~r~~~~q~~~L~~~f~~~m~~fq 105 (151)
T cd00179 81 SVDRIRKTQHSGLSKKFVEVMTEFN 105 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888999999888877765543
No 24
>PF07730 HisKA_3: Histidine kinase; InterPro: IPR011712 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represetns the dimerisation and phosphoacceptor domain of a sub-family of histidine kinases. It shares sequence similarity with IPR003661 from INTERPRO and IPR011102 from INTERPRO.; GO: 0000155 two-component sensor activity, 0046983 protein dimerization activity, 0000160 two-component signal transduction system (phosphorelay), 0016021 integral to membrane; PDB: 3GIE_B 3GIG_A 3EHJ_B 3EHH_B 3GIF_B 3EHF_B 3EHG_A.
Probab=75.83 E-value=17 Score=24.47 Aligned_cols=58 Identities=12% Similarity=0.196 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHHHHhcccCC
Q 026244 181 DMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQVMTFNL 241 (241)
Q Consensus 181 d~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~k~r~~~~ 241 (241)
|.+++.+..++-....+...+....+ .+...+..+...+..+...++.++..+|++.|
T Consensus 11 D~v~q~L~~i~~~l~~~~~~~~~~~~---~~~~~l~~i~~~~~~~~~~~R~~~~~Lrp~~L 68 (68)
T PF07730_consen 11 DGVGQSLTAIKMQLEALRRRLADDPE---EAREELEEIRELLREALQELRRIIHELRPPVL 68 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTT-HH---HHHHHHHHHHHHHHHHHHHHHHHHHHCH----
T ss_pred hHHHHHHHHHHHHHHHHHhhhcCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 45566666666666555555532222 67777788888888889999999999988764
No 25
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=66.52 E-value=28 Score=25.13 Aligned_cols=55 Identities=22% Similarity=0.304 Sum_probs=41.5
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHH---HHHHHHHHhhhHHHHHHhHHHhhhHH
Q 026244 168 EYEMRKMKQDQGLDMISEGLDTLKNMAHD---MNEEVDRQVPLMDEIDTKVDRATADL 222 (241)
Q Consensus 168 ~~qq~~~eQD~~Ld~l~~~v~~lk~~a~~---ig~El~~Q~~lLd~l~~~vD~~~~~L 222 (241)
.+.+-.+.-|+..|.|...|..++.--.. ++.-|+-|..-|+.++..|...++-|
T Consensus 8 ~Ir~dIk~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~~V~~I~~iL 65 (75)
T PF05531_consen 8 VIRQDIKAVDDKVDALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNTKVNEIQDIL 65 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555777888899999998887765554 77778888888888888777766654
No 26
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=64.36 E-value=23 Score=26.12 Aligned_cols=20 Identities=25% Similarity=0.297 Sum_probs=10.2
Q ss_pred HHhhhhhHHHHHHHHHHHHH
Q 026244 173 KMKQDQGLDMISEGLDTLKN 192 (241)
Q Consensus 173 ~~eQD~~Ld~l~~~v~~lk~ 192 (241)
+...+..||.|...|..|..
T Consensus 28 ~~~ins~LD~Lns~LD~LE~ 47 (83)
T PF03670_consen 28 YAAINSMLDQLNSCLDHLEQ 47 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555444433
No 27
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.69 E-value=81 Score=28.91 Aligned_cols=65 Identities=17% Similarity=0.146 Sum_probs=58.8
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHHHHh
Q 026244 172 RKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQV 236 (241)
Q Consensus 172 ~~~eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~k~ 236 (241)
.+..|+++...|...|-..-.+=..|-+-|-.|..-+|-|-+.+..++.-+..+|.-+++....-
T Consensus 226 ~~n~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka~~~~ 290 (316)
T KOG3894|consen 226 ELNELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKAKRNN 290 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHhc
Confidence 37778888888888888888888999999999999999999999999999999999999987654
No 28
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=62.34 E-value=97 Score=27.16 Aligned_cols=64 Identities=11% Similarity=0.149 Sum_probs=56.2
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHHHHhc
Q 026244 174 MKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQVM 237 (241)
Q Consensus 174 ~eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~k~r 237 (241)
-=|.+--+.+..-.+.||..|.+-++-|.+-|+.|......+|.....|..++.|+.+--.+-+
T Consensus 151 ~lQeeLaesll~LArslKtnalAfqsalkeDnQvl~~~~k~~D~N~~~L~~~Serve~y~ksk~ 214 (244)
T KOG2678|consen 151 TLQEELAESLLKLARSLKTNALAFQSALKEDNQVLGAAEKGIDVNSQGLMDVSERVEKYDKSKL 214 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHhhh
Confidence 3355666788888999999999999999999999999999999999999999999987665544
No 29
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=60.20 E-value=69 Score=25.15 Aligned_cols=59 Identities=20% Similarity=0.267 Sum_probs=34.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHH
Q 026244 175 KQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTV 233 (241)
Q Consensus 175 eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l 233 (241)
.....|..|...|..|..+-..++...+....+=+.|+..++.+.......+.+++.+-
T Consensus 10 ~I~~~i~~i~~~v~~l~~l~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~ 68 (151)
T cd00179 10 EIRGNIDKISEDVEELQKLHSQLLTAPDADPELKQELESLVQEIKKLAKEIKGKLKELE 68 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666666666666666553334555666666666666666666655543
No 30
>PRK04654 sec-independent translocase; Provisional
Probab=59.55 E-value=63 Score=27.97 Aligned_cols=54 Identities=13% Similarity=0.249 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHHH
Q 026244 180 LDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVT 234 (241)
Q Consensus 180 Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~ 234 (241)
.-.|+..|+.+|.+...+-+|+++.-++ ++|...+..+...++.+...++..+.
T Consensus 29 aRtlGk~irk~R~~~~~vk~El~~El~~-~ELrk~l~~~~~~i~~~~~~lk~~~~ 82 (214)
T PRK04654 29 ARFAGLWVRRARMQWDSVKQELERELEA-EELKRSLQDVQASLREAEDQLRNTQQ 82 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666666655443 45555444444444444444444433
No 31
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=57.38 E-value=64 Score=22.63 Aligned_cols=26 Identities=8% Similarity=0.115 Sum_probs=11.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhh
Q 026244 97 GLSTEELVARNDLVLALPDRIQAIPD 122 (241)
Q Consensus 97 ~l~~~E~~rR~~~v~~L~~~i~~l~~ 122 (241)
.+++.+-..=..-|...++++..++.
T Consensus 50 ~~p~s~r~~~~~kl~~yr~~l~~lk~ 75 (79)
T PF05008_consen 50 SLPPSERNQYKSKLRSYRSELKKLKK 75 (79)
T ss_dssp TS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444445555554443
No 32
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.20 E-value=1.3e+02 Score=26.12 Aligned_cols=183 Identities=13% Similarity=0.141 Sum_probs=85.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHhhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 026244 34 DAFARLYGAVEADIEAALQKAESASNEKNRASVVALNAEIRRTKARLLEEVPKLQRLAIKKVKGLSTEELVARNDLVLAL 113 (241)
Q Consensus 34 DpF~~~~~d~~~~l~~~~~~~~~~~~~~n~~~~~~~~~eir~~l~~L~e~l~~L~~~l~~~~~~l~~~E~~rR~~~v~~L 113 (241)
..|.+-|..+.++|.+-...+-. .. ...-...-++|...+..+.+-|..+. -....++|..-.-=..-+.+.
T Consensus 6 e~yEqqy~~l~a~it~k~~~~~~---~~-~~ekk~~l~~i~~~leEa~ell~qMd----lEvr~lp~~~Rs~~~~KlR~y 77 (220)
T KOG1666|consen 6 EGYEQQYRELSAEITKKIGRALS---LP-GSEKKQLLSEIDSKLEEANELLDQMD----LEVRELPPNFRSSYLSKLREY 77 (220)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhc---CC-chHHHHHHHHHHHhHHHHHHHHHHHH----HHHHhCCchhhhHHHHHHHHH
Confidence 46788888888888887543221 11 11112233555555555544444442 233456665522223344455
Q ss_pred HHHHHhhhhhhccCCCCCCCCCCCCCccccccCCCCCCCchhhhcchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 026244 114 PDRIQAIPDGTAAAPKQSGGWGASASRTEIKFDSDGRFDDEYFQQTEESSQFRQEYEMRKMKQDQGLDMISEGLDTLKNM 193 (241)
Q Consensus 114 ~~~i~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~te~t~~~~q~~qq~~~eQD~~Ld~l~~~v~~lk~~ 193 (241)
++.++.+...+......++. ...+..+..+. ..++.. ...+.-+.|.+ --..+..=-+-|..=+.+....-+|
T Consensus 78 ksdl~~l~~e~k~~~~~~~~---~~~rde~~~~~--~add~~-~~~dQR~rLl~-nTerLeRst~rl~ds~Ria~ETEqI 150 (220)
T KOG1666|consen 78 KSDLKKLKRELKRTTSRNLN---AGDRDELLEAL--EADDQN-ISADQRARLLQ-NTERLERSTDRLKDSQRIALETEQI 150 (220)
T ss_pred HHHHHHHHHHHHHhhccccc---cchHHHHHhhh--hccccc-cchhHHHHHHh-hhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 55666665555432211110 00111111100 000000 00000001110 0122444445566667777888899
Q ss_pred HHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHH
Q 026244 194 AHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKH 231 (241)
Q Consensus 194 a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~ 231 (241)
|..|=++|..|.+-|..--.-.-.|++.|....+-++-
T Consensus 151 G~~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL~t 188 (220)
T KOG1666|consen 151 GSEILEDLHGQREQLERARERLRETDANLGKSRKILTT 188 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHH
Confidence 99999999999877665554444444444444443333
No 33
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=55.68 E-value=65 Score=22.52 Aligned_cols=47 Identities=13% Similarity=0.237 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHH
Q 026244 179 GLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNT 225 (241)
Q Consensus 179 ~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~ 225 (241)
.|+.|..-|.-+-..-..+|+.|-.|...||.|...+.....+|...
T Consensus 5 Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 5 RIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444455555556666666665555555555543
No 34
>PHA03386 P10 fibrous body protein; Provisional
Probab=55.65 E-value=50 Score=24.84 Aligned_cols=51 Identities=22% Similarity=0.248 Sum_probs=41.3
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHH
Q 026244 168 EYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADL 222 (241)
Q Consensus 168 ~~qq~~~eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L 222 (241)
++..-.+.-|...|.|-..|..++.- ++-|+-|...|++|++.|...++-|
T Consensus 9 ~Ir~dIkavd~KVdaLQ~qV~dv~~n----~~~LDa~~~qL~~l~tkV~~Iq~iL 59 (94)
T PHA03386 9 QILDAVQEVDTKVDALQTQLNGLEED----SQPLDGLPAQLTELDTKVSDIQSIL 59 (94)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhc----chhhhhHHHHHHHHHHHHHHHHHhc
Confidence 34455778889999999999888865 6669999999999999998877655
No 35
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=54.56 E-value=66 Score=21.91 Aligned_cols=50 Identities=20% Similarity=0.384 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHHHHh
Q 026244 180 LDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQV 236 (241)
Q Consensus 180 Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~k~ 236 (241)
+|.|+.-|+.|...-..+..++.. +-.+|..+...-..+|.||..+...+
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~-------lr~~v~~ak~EAaRAN~RlDN~a~sY 54 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNA-------LRADVQAAKEEAARANQRLDNIAQSY 54 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhHhhc
Confidence 455555555555544444444432 22333344444444555555444443
No 36
>PRK00846 hypothetical protein; Provisional
Probab=54.11 E-value=82 Score=22.84 Aligned_cols=50 Identities=10% Similarity=0.051 Sum_probs=33.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHH
Q 026244 176 QDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNT 225 (241)
Q Consensus 176 QD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~ 225 (241)
..+.|+.|..-|.=+-..-...|..|-.|...|+.+...+.....||+.+
T Consensus 11 le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 11 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 60 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666666666666666667777777777777777776666666554
No 37
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=53.69 E-value=99 Score=23.67 Aligned_cols=60 Identities=22% Similarity=0.267 Sum_probs=34.5
Q ss_pred hhhhhHHHHHHHHHHH--HHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHHH
Q 026244 175 KQDQGLDMISEGLDTL--KNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVT 234 (241)
Q Consensus 175 eQD~~Ld~l~~~v~~l--k~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~ 234 (241)
-=++.|..|...|..| .+.=....+.++.|.+-+..+...++..+..|+.....|..+-+
T Consensus 34 ~~~q~L~kiE~~~~~l~qgeqI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~ink 95 (102)
T PF01519_consen 34 SNNQRLTKIENKLDQLAQGEQINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINK 95 (102)
T ss_dssp -HTTB-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666633 33333333667777777777777777666666655555554433
No 38
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=52.71 E-value=80 Score=23.39 Aligned_cols=36 Identities=14% Similarity=0.267 Sum_probs=22.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 026244 177 DQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEID 212 (241)
Q Consensus 177 D~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~ 212 (241)
....++++.-+...+.-+..-.+|-.+=|+-||.+|
T Consensus 37 ~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiDN~~ 72 (85)
T PRK09973 37 NAKIARLEQDMKALRPQIYAAKSEANRANTRLDAQD 72 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 334455666666666666666666666666666554
No 39
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=52.71 E-value=1.8e+02 Score=26.34 Aligned_cols=97 Identities=11% Similarity=0.164 Sum_probs=54.1
Q ss_pred hhhccCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhh-hch--------------------hh-----HHHHHHHHHHHH
Q 026244 24 KQRETNVSGDDAFARLYGAVEADIEAALQKAESASNE-KNR--------------------AS-----VVALNAEIRRTK 77 (241)
Q Consensus 24 ~~~~~~~~~~DpF~~~~~d~~~~l~~~~~~~~~~~~~-~n~--------------------~~-----~~~~~~eir~~l 77 (241)
++.+++-..+|.|.|+.+-+.+.|+.+.-. +.+++. ..+ +. ......-++.++
T Consensus 36 ~~~~~~~d~~~~~~q~~~~i~~k~~e~r~~-r~lat~l~~~g~~i~e~ls~~~~~~~~~~~aa~Rplel~e~Ekvlk~aI 114 (338)
T KOG3647|consen 36 GQNEADNDEEDQRDQYRSLIGDKIEELRKA-RELATDLTQRGTTICEMLSKELLHKESLMSAAQRPLELLEVEKVLKSAI 114 (338)
T ss_pred CcCCCCCCcchHHHHHHHHHHHHHHHHHHH-HHHHhhccccchHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHH
Confidence 344444455699999999999988887422 221111 111 10 111223344444
Q ss_pred HHHHhhHhHHHHHHHHH-h--cCCCHHHHHHHHHHHHHHHHHHHhhhh
Q 026244 78 ARLLEEVPKLQRLAIKK-V--KGLSTEELVARNDLVLALPDRIQAIPD 122 (241)
Q Consensus 78 ~~L~e~l~~L~~~l~~~-~--~~l~~~E~~rR~~~v~~L~~~i~~l~~ 122 (241)
..+...+..+...+... + ..| ..-|+||+.-++.++.+++.|..
T Consensus 115 q~i~~~~q~~~~~Lnnvasdea~L-~~Kierrk~ElEr~rkRle~Lqs 161 (338)
T KOG3647|consen 115 QAIQVRLQSSRAQLNNVASDEAAL-GSKIERRKAELERTRKRLEALQS 161 (338)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555555555444211 1 112 23489999999999999988764
No 40
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=50.08 E-value=1.8e+02 Score=27.11 Aligned_cols=51 Identities=18% Similarity=0.249 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhhHhHHHHHHHHHhcCCCHH-HHHHHHHHHHHHHHHHHhhh
Q 026244 71 AEIRRTKARLLEEVPKLQRLAIKKVKGLSTE-ELVARNDLVLALPDRIQAIP 121 (241)
Q Consensus 71 ~eir~~l~~L~e~l~~L~~~l~~~~~~l~~~-E~~rR~~~v~~L~~~i~~l~ 121 (241)
++..+.|..+.++|...+.-+..++..+|.+ =+.+-+.-+..|+.+|.+|-
T Consensus 297 ~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~qMd 348 (359)
T PF10498_consen 297 SERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQMD 348 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 3334445555666666655554444445443 36677778888888887764
No 41
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=49.93 E-value=64 Score=24.62 Aligned_cols=47 Identities=19% Similarity=0.333 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHHhHHHhh---hHHHHHHHHHHHHHHHhcccC
Q 026244 193 MAHDMNEEVDRQVPLMDEIDTKVDRAT---ADLKNTNVRLKHTVTQVMTFN 240 (241)
Q Consensus 193 ~a~~ig~El~~Q~~lLd~l~~~vD~~~---~~L~~~~~r~~~~l~k~r~~~ 240 (241)
-|..|.+=|+.||- ||+|...||.+. -+|+..|.=+...+....|++
T Consensus 58 KaRlItQVLELQnT-LdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLMSaS 107 (120)
T KOG3650|consen 58 KARLITQVLELQNT-LDDLSQRVDSVKEENLKLRSENQVLGQYIENLMSAS 107 (120)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhh
Confidence 35556666777764 678888887764 478888888888877775543
No 42
>PRK11637 AmiB activator; Provisional
Probab=48.31 E-value=2.1e+02 Score=27.01 Aligned_cols=60 Identities=8% Similarity=0.137 Sum_probs=34.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHHHHh
Q 026244 177 DQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQV 236 (241)
Q Consensus 177 D~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~k~ 236 (241)
...|..+..-|..+...-.....+|...+.-|+.+...+.....+|......++..+..|
T Consensus 74 ~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~ 133 (428)
T PRK11637 74 LAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAA 133 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444455556666666666666666666666666666666666555
No 43
>PF07432 Hc1: Histone H1-like protein Hc1; InterPro: IPR010886 This family consists of several bacterial histone H1-like Hc1 proteins, which are found in Chlamydiae and Bacteroidetes species. Chlamydiae are prokaryotic obligate intracellular parasites that undergo a biphasic life cycle involving an infectious, extracellular form known as elementary bodies and an intracellular, replicating form termed reticulate bodies. The gene coding for Hc1 is expressed only during the late stages of the chlamydial life cycle concomitant with the reorganisation of chlamydial reticulate bodies into elementary bodies, suggesting that the Hc1 protein plays a role in the condensation of chlamydial chromatin during intracellular differentiation [].; GO: 0003677 DNA binding
Probab=46.81 E-value=56 Score=25.66 Aligned_cols=51 Identities=6% Similarity=0.223 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHHHHhcccC
Q 026244 183 ISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQVMTFN 240 (241)
Q Consensus 183 l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~k~r~~~ 240 (241)
|..++..++++-..|..+++ .++.+---++.|.+.++..|.+++..+|.-|
T Consensus 2 lKdt~~kmkeL~e~~~~D~~-------K~EKGNKAAGtRaRK~sleLeKLaKefRKeS 52 (123)
T PF07432_consen 2 LKDTFKKMKELLESFEADAE-------KAEKGNKAAGTRARKASLELEKLAKEFRKES 52 (123)
T ss_pred hHHHHHHHHHHHHHHHHHHH-------HHHccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666653 3688888899999999999999999998644
No 44
>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure [].; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.
Probab=45.70 E-value=6.9 Score=31.26 Aligned_cols=29 Identities=17% Similarity=0.394 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026244 175 KQDQGLDMISEGLDTLKNMAHDMNEEVDR 203 (241)
Q Consensus 175 eQD~~Ld~l~~~v~~lk~~a~~ig~El~~ 203 (241)
.-...|+.....|..|..++-.+-+.|..
T Consensus 49 ~~~~~l~~a~~~v~~L~~~~~~L~~kl~~ 77 (138)
T PF06009_consen 49 DANKALDDANNSVKNLEQLAPDLLDKLKP 77 (138)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555444444444333
No 45
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.36 E-value=1.9e+02 Score=26.01 Aligned_cols=30 Identities=10% Similarity=0.245 Sum_probs=12.1
Q ss_pred HHHhhhHHHHHHhHHHhhhHHHHHHHHHHH
Q 026244 202 DRQVPLMDEIDTKVDRATADLKNTNVRLKH 231 (241)
Q Consensus 202 ~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~ 231 (241)
+.=+.-|..+..+++.+..++..-+..+++
T Consensus 76 ~~~~~eik~l~~eI~~~~~~I~~r~~~l~~ 105 (265)
T COG3883 76 DQSKAEIKKLQKEIAELKENIVERQELLKK 105 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444443333333
No 46
>PRK02119 hypothetical protein; Provisional
Probab=44.92 E-value=1.1e+02 Score=21.71 Aligned_cols=45 Identities=11% Similarity=0.235 Sum_probs=20.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHH
Q 026244 178 QGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADL 222 (241)
Q Consensus 178 ~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L 222 (241)
+.|+.|..-|.-+-..-...|..|-.|...||.+...+.....+|
T Consensus 9 ~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl 53 (73)
T PRK02119 9 NRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKL 53 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444445555555555554444444444
No 47
>PHA03395 p10 fibrous body protein; Provisional
Probab=43.51 E-value=96 Score=23.06 Aligned_cols=54 Identities=20% Similarity=0.282 Sum_probs=40.7
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHH---HHHHHHHHHHhhhHHHHHHhHHHhhhH
Q 026244 168 EYEMRKMKQDQGLDMISEGLDTLKNMA---HDMNEEVDRQVPLMDEIDTKVDRATAD 221 (241)
Q Consensus 168 ~~qq~~~eQD~~Ld~l~~~v~~lk~~a---~~ig~El~~Q~~lLd~l~~~vD~~~~~ 221 (241)
++..-.+.-|..+|.|...|..++.-- ..+++-|+.|..-|+.+.+.|+..++-
T Consensus 8 ~Ir~dIkavd~KVdalQ~~V~~l~~nlpdv~~l~~kLdaq~~~Ltti~tkv~~I~di 64 (87)
T PHA03395 8 LIRQDIKAVSDKVDALQAAVDDVRANLPDVTEINEKLDAQSASLDTISSAVDNITDI 64 (87)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHHHHHHHHHHHHHHHc
Confidence 344557778888999998888887543 367778888888888888888875543
No 48
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=43.35 E-value=1.7e+02 Score=23.38 Aligned_cols=24 Identities=17% Similarity=0.325 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh
Q 026244 100 TEELVARNDLVLALPDRIQAIPDG 123 (241)
Q Consensus 100 ~~E~~rR~~~v~~L~~~i~~l~~~ 123 (241)
+.|+..+..-|..|+.++.++...
T Consensus 100 e~e~~~Kdsei~~Lr~~L~~~~~~ 123 (131)
T PF04859_consen 100 EAELRAKDSEIDRLREKLDELNRA 123 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777777777776543
No 49
>COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only]
Probab=43.30 E-value=1.1e+02 Score=24.55 Aligned_cols=48 Identities=19% Similarity=0.308 Sum_probs=32.3
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHH----HHHHhhhHHHHHHhHHHhh
Q 026244 172 RKMKQDQGLDMISEGLDTLKNMAHDMNEE----VDRQVPLMDEIDTKVDRAT 219 (241)
Q Consensus 172 ~~~eQD~~Ld~l~~~v~~lk~~a~~ig~E----l~~Q~~lLd~l~~~vD~~~ 219 (241)
.++.-+..||.++.++.-+-..-..|-.| |..+|.|+||+..++++.+
T Consensus 25 tlkkv~~tldevakt~~~l~~qv~gi~~eT~~Ll~K~N~L~eDvq~Kv~tld 76 (139)
T COG4768 25 TLKKVSKTLDEVAKTLKGLTSQVDGITHETEELLHKTNTLAEDVQGKVATLD 76 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHh
Confidence 46667777777777776665554444333 5678888888887776654
No 50
>PRK01919 tatB sec-independent translocase; Provisional
Probab=42.39 E-value=1.9e+02 Score=24.19 Aligned_cols=25 Identities=16% Similarity=0.283 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 026244 181 DMISEGLDTLKNMAHDMNEEVDRQV 205 (241)
Q Consensus 181 d~l~~~v~~lk~~a~~ig~El~~Q~ 205 (241)
-.++..+++++.++..+.+|+++..
T Consensus 30 RtlGk~i~k~Rr~~~d~K~ev~~E~ 54 (169)
T PRK01919 30 RTAGALFGRAQRYINDVKAEVSREI 54 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666655554
No 51
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.80 E-value=2.6e+02 Score=25.12 Aligned_cols=63 Identities=13% Similarity=0.129 Sum_probs=46.6
Q ss_pred HHHhhhhhHHHHHHHH---HHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHHH
Q 026244 172 RKMKQDQGLDMISEGL---DTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVT 234 (241)
Q Consensus 172 ~~~eQD~~Ld~l~~~v---~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~ 234 (241)
+.....+-|+.-...+ ..-+..|..--.+|.+|.+.|+.+...+|.....+..+.+.+..+-+
T Consensus 70 ~~~~~~eSl~St~~~L~~~~e~~~~g~~Tl~~L~~Q~eQL~rte~~lD~i~~d~~~~er~l~~l~~ 135 (273)
T KOG3065|consen 70 IESTAQESLKSTRRMLKLAEESREDGSRTLVMLSEQGEQLERTEKNLDDIKVDLKRAERNLTELKG 135 (273)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 3444555555544443 34456677777899999999999999999999999988888776543
No 52
>PF12495 Vip3A_N: Vegetative insecticide protein 3A N terminal ; InterPro: IPR022180 This family of proteins is found in bacteria. Proteins in this family are typically between 170 and 789 amino acids in length. The family is found in association with PF02018 from PFAM. Vip3A represents a novel class of proteins insecticidal to lepidopteran insect larvae.
Probab=41.78 E-value=1.2e+02 Score=24.23 Aligned_cols=67 Identities=13% Similarity=0.276 Sum_probs=46.3
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHH---HHHHH----HHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHHHHh
Q 026244 170 EMRKMKQDQGLDMISEGLDTLKNMAH---DMNEE----VDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQV 236 (241)
Q Consensus 170 qq~~~eQD~~Ld~l~~~v~~lk~~a~---~ig~E----l~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~k~ 236 (241)
|+.+.+....||.+...++.|-.+|. ....| -.+||.+|.+++...+..++-|+.---++-.++..+
T Consensus 44 q~lln~is~kldging~l~dliaqgnln~el~ke~lkianeqn~~ln~vn~~l~~in~~l~~ylpkitsmls~v 117 (177)
T PF12495_consen 44 QQLLNQISDKLDGINGSLNDLIAQGNLNSELSKEILKIANEQNQMLNNVNNQLNSINSMLNTYLPKITSMLSDV 117 (177)
T ss_pred HHHHHHhcccccccCCcHHHHHHcCCccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 44566677788888877777654432 22222 257999999999999988888887766666665554
No 53
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=41.72 E-value=1.5e+02 Score=22.18 Aligned_cols=61 Identities=15% Similarity=0.160 Sum_probs=42.1
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHHHHhc
Q 026244 173 KMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQVM 237 (241)
Q Consensus 173 ~~eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~k~r 237 (241)
..+..+....|+..+..|+.. ..+|..+-..||.|+..|.....-......-.+.+=.+++
T Consensus 37 Y~~~~~~~~~l~~~~~~l~~k----~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~k 97 (99)
T PF10046_consen 37 YKKMKDIAAGLEKNLEDLNQK----YEELQPYLQQIDQIEEQVTELEQTVYELDEYSKELESKFK 97 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 556666677777777777664 4678888888999998888776666655555555555543
No 54
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=41.50 E-value=83 Score=21.97 Aligned_cols=38 Identities=3% Similarity=0.112 Sum_probs=19.4
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 026244 171 MRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLM 208 (241)
Q Consensus 171 q~~~eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lL 208 (241)
..+.-||..++.|..+|..+...-..+..+|..-..-|
T Consensus 11 ~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl 48 (69)
T PF04102_consen 11 IKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERL 48 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666665554444444433333333
No 55
>PRK00736 hypothetical protein; Provisional
Probab=39.76 E-value=1.3e+02 Score=21.02 Aligned_cols=44 Identities=11% Similarity=0.239 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHH
Q 026244 180 LDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLK 223 (241)
Q Consensus 180 Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~ 223 (241)
|+.|..-|.-+-..-..+|..|-.|...||.|...+.....+|.
T Consensus 7 i~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~ 50 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFL 50 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344444455555555555554444444443
No 56
>PRK02793 phi X174 lysis protein; Provisional
Probab=39.48 E-value=1e+02 Score=21.85 Aligned_cols=17 Identities=6% Similarity=0.059 Sum_probs=7.8
Q ss_pred HHhhhhhHHHHHHHHHH
Q 026244 173 KMKQDQGLDMISEGLDT 189 (241)
Q Consensus 173 ~~eQD~~Ld~l~~~v~~ 189 (241)
+.=|+..++.|...|.+
T Consensus 17 lafQe~tIe~Ln~~v~~ 33 (72)
T PRK02793 17 LAFQEITIEELNVTVTA 33 (72)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444443
No 57
>PRK00736 hypothetical protein; Provisional
Probab=39.45 E-value=1e+02 Score=21.59 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=15.5
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHH
Q 026244 170 EMRKMKQDQGLDMISEGLDTLKNMA 194 (241)
Q Consensus 170 qq~~~eQD~~Ld~l~~~v~~lk~~a 194 (241)
+..+.-|+..++.|..+|.++-..-
T Consensus 11 E~klafqe~tie~Ln~~v~~Qq~~i 35 (68)
T PRK00736 11 EIRVAEQEKTIEELSDQLAEQWKTV 35 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777777776665443
No 58
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=39.20 E-value=2e+02 Score=22.90 Aligned_cols=39 Identities=23% Similarity=0.232 Sum_probs=19.3
Q ss_pred HHHHhhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Q 026244 78 ARLLEEVPKLQRLAIKKVKGLSTEELVARNDLVLALPDRI 117 (241)
Q Consensus 78 ~~L~e~l~~L~~~l~~~~~~l~~~E~~rR~~~v~~L~~~i 117 (241)
....+++.+|...+.. .+.=-..|+.+|...+..|+.++
T Consensus 111 k~~kee~~klk~~~~~-~~tq~~~e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 111 KQEKEELQKLKNQLQQ-RKTQYEHELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555544321 11112456666666666666654
No 59
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=38.46 E-value=1.6e+02 Score=21.55 Aligned_cols=58 Identities=10% Similarity=0.066 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHHHHh
Q 026244 179 GLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQV 236 (241)
Q Consensus 179 ~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~k~ 236 (241)
.|-.....+..-=+.+..=-++|+.|+.-|..+.+..+..++.|....+-++++-+..
T Consensus 9 ~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~ 66 (92)
T PF03908_consen 9 SLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRD 66 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555556678999999999999999999999999888888776653
No 60
>PRK15396 murein lipoprotein; Provisional
Probab=36.27 E-value=1.7e+02 Score=21.26 Aligned_cols=30 Identities=13% Similarity=0.370 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 026244 180 LDMISEGLDTLKNMAHDMNEEVDRQVPLMD 209 (241)
Q Consensus 180 Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd 209 (241)
.+.+..-+..++.-+..--+|-.+=|.-||
T Consensus 41 vdql~~dv~~~~~~~~~a~~eA~raN~RlD 70 (78)
T PRK15396 41 VDQLSNDVNAMRSDVQAAKDDAARANQRLD 70 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433333333
No 61
>PRK04325 hypothetical protein; Provisional
Probab=36.26 E-value=1.2e+02 Score=21.59 Aligned_cols=42 Identities=14% Similarity=0.219 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHH
Q 026244 181 DMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADL 222 (241)
Q Consensus 181 d~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L 222 (241)
+.|..-|.-+-..-..+|+.|-.|...|+.|...+.....||
T Consensus 12 ~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl 53 (74)
T PRK04325 12 TELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQM 53 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333334444445555554444444444333
No 62
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=35.04 E-value=1.7e+02 Score=21.06 Aligned_cols=68 Identities=18% Similarity=0.247 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH--HHH--HHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHH
Q 026244 165 FRQEYEMRKMKQDQGLDMISEGLDTLKNMAH--DMN--EEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHT 232 (241)
Q Consensus 165 ~~q~~qq~~~eQD~~Ld~l~~~v~~lk~~a~--~ig--~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~ 232 (241)
++.........|+.-+..|..--..|+.+.. .+. =.+.....=|..+-..|..++.++.+..+|+.++
T Consensus 19 ~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~y~~KL~~ikkrm~~l~~~l~~lk~R~~~L 90 (92)
T PF14712_consen 19 LDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDPYVKKLVNIKKRMSNLHERLQKLKKRADKL 90 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344455666676666666655555554443 111 1123366667778888888888888888877664
No 63
>PRK04406 hypothetical protein; Provisional
Probab=34.63 E-value=1.7e+02 Score=20.90 Aligned_cols=46 Identities=11% Similarity=0.264 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHH
Q 026244 178 QGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLK 223 (241)
Q Consensus 178 ~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~ 223 (241)
+.|+.|..-|.-+-..-...|+.|-.|...|+.|...+.....+|.
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~ 56 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVK 56 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444455555555555555555544444443
No 64
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=34.23 E-value=1.6e+02 Score=20.36 Aligned_cols=51 Identities=25% Similarity=0.341 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHhhHhHHHHHHHHHhcCCCHHHHHHH--HHHHHHHHHHHHhh
Q 026244 69 LNAEIRRTKARLLEEVPKLQRLAIKKVKGLSTEELVAR--NDLVLALPDRIQAI 120 (241)
Q Consensus 69 ~~~eir~~l~~L~e~l~~L~~~l~~~~~~l~~~E~~rR--~~~v~~L~~~i~~l 120 (241)
+.++|| +...+.++|...+........+|-..|...| ..-|..|+.+++++
T Consensus 6 L~~Eir-akQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 6 LEAEIR-AKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445554 3344555565554432222233444444333 23344444444443
No 65
>PRK00295 hypothetical protein; Provisional
Probab=33.51 E-value=1.3e+02 Score=20.98 Aligned_cols=45 Identities=4% Similarity=0.117 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHH
Q 026244 180 LDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKN 224 (241)
Q Consensus 180 Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~ 224 (241)
|+.|..-|.-+-..-..+|..|-.|...||.+...+.....+|..
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444555555555555555544444443
No 66
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=33.35 E-value=4.4e+02 Score=25.26 Aligned_cols=25 Identities=8% Similarity=0.097 Sum_probs=10.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhhh
Q 026244 99 STEELVARNDLVLALPDRIQAIPDG 123 (241)
Q Consensus 99 ~~~E~~rR~~~v~~L~~~i~~l~~~ 123 (241)
++..+..=..-+..+..++..|...
T Consensus 244 ~~~qle~v~kdi~~a~~~L~~m~~~ 268 (424)
T PF03915_consen 244 SPKQLETVAKDISRASKELKKMKEY 268 (424)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444443
No 67
>PRK00846 hypothetical protein; Provisional
Probab=33.18 E-value=1.4e+02 Score=21.68 Aligned_cols=32 Identities=28% Similarity=0.241 Sum_probs=18.2
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 026244 170 EMRKMKQDQGLDMISEGLDTLKNMAHDMNEEV 201 (241)
Q Consensus 170 qq~~~eQD~~Ld~l~~~v~~lk~~a~~ig~El 201 (241)
+..+.=|+..++.|..+|.++...-..+-..|
T Consensus 19 E~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql 50 (77)
T PRK00846 19 ETRLSFQEQALTELSEALADARLTGARNAELI 50 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466677777777777766554433333333
No 68
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=33.08 E-value=5.4e+02 Score=26.39 Aligned_cols=54 Identities=13% Similarity=0.147 Sum_probs=26.8
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHH
Q 026244 173 KMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTN 226 (241)
Q Consensus 173 ~~eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~ 226 (241)
+..|+..=+.|..-+..|+.+...--.||..=.+-++.|.+..++...|+..+.
T Consensus 553 i~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~ 606 (717)
T PF10168_consen 553 IEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAK 606 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555444444444444444444444444444443
No 69
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=32.87 E-value=3.1e+02 Score=23.26 Aligned_cols=63 Identities=13% Similarity=0.247 Sum_probs=54.6
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHH
Q 026244 170 EMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHT 232 (241)
Q Consensus 170 qq~~~eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~ 232 (241)
+..+...-..|......+.+....+.....||.++..||+.-...|+.....|..+..-+.++
T Consensus 108 ~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~t 170 (188)
T PF05335_consen 108 QQQLETLKAALKAAQANLANAEQVAEGAQQELAEKTQLLEAAKRRVEELQRQLQAARADYEKT 170 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666677888899999999999999999999999999999999999999998887766654
No 70
>cd00238 ERp29c ERp29 and ERp38, C-terminal domain; composed of the protein disulfide isomerase (PDI)-like proteins ERp29 and ERp38. ERp29 (also called ERp28) is a ubiquitous endoplasmic reticulum (ER)-resident protein expressed in high levels in secretory cells. It contains a redox inactive TRX-like domain at the N-terminus. The expression profile of ERp29 suggests a role in secretory protein production, distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex and is essential in regulating the secretion of thyroglobulin. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase. ERp38 is a P5-like protein, first isolated from alfalfa (the cDNA clone was named G1), which contains two redox active TRX domains at the N-terminus, like human P5.
Probab=32.82 E-value=2.1e+02 Score=21.27 Aligned_cols=35 Identities=34% Similarity=0.524 Sum_probs=24.1
Q ss_pred HHHHHHHhhHhHHHHHHHHHhcCCCHH---HHHHHHHHHH
Q 026244 75 RTKARLLEEVPKLQRLAIKKVKGLSTE---ELVARNDLVL 111 (241)
Q Consensus 75 ~~l~~L~e~l~~L~~~l~~~~~~l~~~---E~~rR~~~v~ 111 (241)
.+-..+..|+.+|++.+... .+++. |+..|.+.+.
T Consensus 54 kg~~yv~~E~~RL~~iL~~~--~ls~~K~del~~R~NIL~ 91 (93)
T cd00238 54 KGEDYVEKELARLERLLEKK--GLAPEKADELTRRLNILR 91 (93)
T ss_pred cchhHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHh
Confidence 44466888999999987532 35664 6777777665
No 71
>PRK01770 sec-independent translocase; Provisional
Probab=32.21 E-value=3e+02 Score=23.01 Aligned_cols=36 Identities=11% Similarity=0.400 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHH
Q 026244 180 LDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVD 216 (241)
Q Consensus 180 Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD 216 (241)
+-.|+..|+++|.++..+.+|+++.-. ++++...+.
T Consensus 29 ~r~lg~~i~~~R~~~~~~k~e~~~E~~-~~El~~~l~ 64 (171)
T PRK01770 29 VKTVAGWIRALRSLATTVQNELTQELK-LQELQDSLK 64 (171)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHH
Confidence 345788888888888888888877664 345444433
No 72
>PRK00708 sec-independent translocase; Provisional
Probab=31.70 E-value=3.4e+02 Score=23.46 Aligned_cols=22 Identities=14% Similarity=0.306 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026244 182 MISEGLDTLKNMAHDMNEEVDR 203 (241)
Q Consensus 182 ~l~~~v~~lk~~a~~ig~El~~ 203 (241)
.|+..|+.+|.++..+.+++++
T Consensus 31 ~lGk~v~k~R~~a~e~r~~~~e 52 (209)
T PRK00708 31 AFGKMTARMRKMAGEFRRQFDE 52 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 73
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=31.67 E-value=4e+02 Score=24.23 Aligned_cols=57 Identities=16% Similarity=0.136 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 026244 70 NAEIRRTKARLLEEVPKLQRLAIKKVKGLSTEELVARNDLVLALPDRIQAIPDGTAA 126 (241)
Q Consensus 70 ~~eir~~l~~L~e~l~~L~~~l~~~~~~l~~~E~~rR~~~v~~L~~~i~~l~~~~~~ 126 (241)
....|..|..|..+|..-.+.+..........|-..|..+...+...+.+|...+..
T Consensus 69 ~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee~kR~el~~kFq~~L~dIq~~~ee 125 (309)
T PF09728_consen 69 AILAKSKLESLCRELQKQNKKLKEESKRRAREEEEKRKELSEKFQATLKDIQAQMEE 125 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356677888888888887777655556677888999999999999999999887753
No 74
>PRK02119 hypothetical protein; Provisional
Probab=31.24 E-value=1.7e+02 Score=20.82 Aligned_cols=32 Identities=19% Similarity=0.231 Sum_probs=20.0
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 026244 170 EMRKMKQDQGLDMISEGLDTLKNMAHDMNEEV 201 (241)
Q Consensus 170 qq~~~eQD~~Ld~l~~~v~~lk~~a~~ig~El 201 (241)
+..+.-|+..++.|..+|.++...-..+-.+|
T Consensus 15 E~rla~QE~tie~LN~~v~~Qq~~id~L~~ql 46 (73)
T PRK02119 15 EMKIAFQENLLEELNQALIEQQFVIDKMQVQL 46 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44466677777777777777765544433333
No 75
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=30.52 E-value=3.2e+02 Score=22.77 Aligned_cols=64 Identities=14% Similarity=0.227 Sum_probs=50.0
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHH
Q 026244 170 EMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTV 233 (241)
Q Consensus 170 qq~~~eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l 233 (241)
+..+......|..+...+..|+.-......||.+.+..+..+.+.+...+-.+..+..++.++-
T Consensus 108 ~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~ 171 (194)
T PF08614_consen 108 EKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLE 171 (194)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3447777888888889999999999999999999999999999998888888888777777653
No 76
>PRK02793 phi X174 lysis protein; Provisional
Probab=30.08 E-value=2e+02 Score=20.30 Aligned_cols=48 Identities=17% Similarity=0.163 Sum_probs=29.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHH
Q 026244 177 DQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKN 224 (241)
Q Consensus 177 D~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~ 224 (241)
.+.|..|..-|.-+-..-..+|+.|-.|...|+.+...+.....+|..
T Consensus 7 e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 7 EARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666666666666666666666666666666666555555554443
No 77
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=30.06 E-value=7.9e+02 Score=27.19 Aligned_cols=116 Identities=12% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhhcchhhhhccCCCCCChHHHHHHHHHHHHHHHHHHH-HHhhhhhchhhHHHHHHHHHHHHHHHH
Q 026244 3 VIDILTRVDSICKKYDKYDVEKQRETNVSGDDAFARLYGAVEADIEAALQKA-ESASNEKNRASVVALNAEIRRTKARLL 81 (241)
Q Consensus 3 ~~d~~~r~~~~~~k~~~~~~~~~~~~~~~~~DpF~~~~~d~~~~l~~~~~~~-~~~~~~~n~~~~~~~~~eir~~l~~L~ 81 (241)
|-+|-.|+-.+..+- +.-.....-.||..-|.++.+.|+.+...+ ....+...-+.++....++|+.|..+.
T Consensus 1173 l~~L~~rt~rl~~~A-------~~l~~tGv~gay~s~f~~me~kl~~ir~il~~~svs~~~i~~l~~~~~~lr~~l~~~~ 1245 (1758)
T KOG0994|consen 1173 LQELALRTHRLINRA-------KELKQTGVLGAYASRFLDMEEKLEEIRAILSAPSVSAEDIAQLASATESLRRQLQALT 1245 (1758)
T ss_pred HHHHHHHHHHHHHHH-------HHhhhccCchhhHhHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhHhHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 026244 82 EEVPKLQRLAIKK--VKGLSTEELVARNDLVLALPDRIQAIPDGTA 125 (241)
Q Consensus 82 e~l~~L~~~l~~~--~~~l~~~E~~rR~~~v~~L~~~i~~l~~~~~ 125 (241)
+.|..++..+... .-.++..|++.=++-+..|..-..+|.+.+.
T Consensus 1246 e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~~ 1291 (1758)
T KOG0994|consen 1246 EDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQLE 1291 (1758)
T ss_pred hhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
No 78
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=30.00 E-value=5.7e+02 Score=25.52 Aligned_cols=85 Identities=11% Similarity=0.161 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhchhhHHHH--HHHHHHHHHHHHhhHhHHHHHHH---------HHhcCCCHHHHHHH
Q 026244 38 RLYGAVEADIEAALQKAESASNEKNRASVVAL--NAEIRRTKARLLEEVPKLQRLAI---------KKVKGLSTEELVAR 106 (241)
Q Consensus 38 ~~~~d~~~~l~~~~~~~~~~~~~~n~~~~~~~--~~eir~~l~~L~e~l~~L~~~l~---------~~~~~l~~~E~~rR 106 (241)
.+-.|++-+|+.+-..++++++=.++..+--. --+-|+.+..-.|.....++... .....|+|.|.++|
T Consensus 42 K~e~DLKkEIKKLQRlRdQIKtW~ss~dIKDK~~L~d~RrlIE~~MErfK~vEke~KtKa~SkegL~~~~klDPkEkek~ 121 (575)
T KOG2150|consen 42 KLESDLKKEIKKLQRLRDQIKTWQSSSDIKDKDSLLDNRRLIEQRMERFKAVEKEMKTKAFSKEGLSAAEKLDPKEKEKR 121 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhccccccCChHHHHHH
Confidence 34467888888876556665554454443211 23445555554444444443321 11245899999888
Q ss_pred H------HHHHHHHHHHHhhhh
Q 026244 107 N------DLVLALPDRIQAIPD 122 (241)
Q Consensus 107 ~------~~v~~L~~~i~~l~~ 122 (241)
. +.|.+|..+++.+..
T Consensus 122 d~~~wi~~~ideLe~q~d~~ea 143 (575)
T KOG2150|consen 122 DTMDWISNQIDELERQVDSFEA 143 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4 555666666665543
No 79
>PRK04325 hypothetical protein; Provisional
Probab=29.98 E-value=2.1e+02 Score=20.37 Aligned_cols=31 Identities=10% Similarity=0.128 Sum_probs=18.9
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 026244 170 EMRKMKQDQGLDMISEGLDTLKNMAHDMNEE 200 (241)
Q Consensus 170 qq~~~eQD~~Ld~l~~~v~~lk~~a~~ig~E 200 (241)
+..+.-|+..++.|...|..+...-..+...
T Consensus 15 E~klAfQE~tIe~LN~vv~~Qq~~I~~L~~q 45 (74)
T PRK04325 15 EIQLAFQEDLIDGLNATVARQQQTLDLLQAQ 45 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777777777777665554433333
No 80
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=29.39 E-value=2.3e+02 Score=20.85 Aligned_cols=58 Identities=16% Similarity=0.267 Sum_probs=25.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHH
Q 026244 175 KQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHT 232 (241)
Q Consensus 175 eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~ 232 (241)
+....|..|...|..|+.+-..++...+.-..+=+.|+..++.+.......+.+++.+
T Consensus 12 ~I~~~I~~i~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l 69 (117)
T smart00503 12 EIRANIQKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKLKEL 69 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555554444444433112233444444444444444444444433
No 81
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=28.95 E-value=1.3e+02 Score=22.99 Aligned_cols=29 Identities=17% Similarity=0.234 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 026244 165 FRQEYEMRKMKQDQGLDMISEGLDTLKNM 193 (241)
Q Consensus 165 ~~q~~qq~~~eQD~~Ld~l~~~v~~lk~~ 193 (241)
+...|-.+|..|-+.+|.|+.+||.|.+-
T Consensus 83 Lm~rQN~mm~~qqqsidslsksvgklahk 111 (121)
T PF10669_consen 83 LMNRQNNMMKQQQQSIDSLSKSVGKLAHK 111 (121)
T ss_pred HHHHHhHHHHHHHHhHHHHHHHHHHHHHH
Confidence 33344567888889999999999988654
No 82
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=28.87 E-value=5.7e+02 Score=25.15 Aligned_cols=158 Identities=15% Similarity=0.209 Sum_probs=84.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhchh-hHHHHHHHHHHHHHHHHhhHhHHHHHHHHHhcC-----C-----CHHHH
Q 026244 35 AFARLYGAVEADIEAALQKAESASNEKNRA-SVVALNAEIRRTKARLLEEVPKLQRLAIKKVKG-----L-----STEEL 103 (241)
Q Consensus 35 pF~~~~~d~~~~l~~~~~~~~~~~~~~n~~-~~~~~~~eir~~l~~L~e~l~~L~~~l~~~~~~-----l-----~~~E~ 103 (241)
.|.+.+..+-.+|..+....+.+...-..+ ........+++....|..+...+..... .+++ . -..|+
T Consensus 261 ~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~-~mk~K~~~~~g~l~kl~~ei 339 (622)
T COG5185 261 GFEKFVHIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVN-AMKQKSQEWPGKLEKLKSEI 339 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH-HHHHHHHhcchHHHHHHHHH
Confidence 466666666666666543222211111111 1223335555566666666666655431 1111 0 12355
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccCCCCCCCCCCCCCccccccCCCCCCCchhhhcchhhHHHH---HHHHHH---HHhhh
Q 026244 104 VARNDLVLALPDRIQAIPDGTAAAPKQSGGWGASASRTEIKFDSDGRFDDEYFQQTEESSQFR---QEYEMR---KMKQD 177 (241)
Q Consensus 104 ~rR~~~v~~L~~~i~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~te~t~~~~---q~~qq~---~~eQD 177 (241)
+.....+..|+..++.|...+... .| . +.+|. ++-+++ +....
T Consensus 340 e~kEeei~~L~~~~d~L~~q~~kq--------------~I--------------s---~e~fe~mn~Ere~L~reL~~i~ 388 (622)
T COG5185 340 ELKEEEIKALQSNIDELHKQLRKQ--------------GI--------------S---TEQFELMNQEREKLTRELDKIN 388 (622)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhc--------------CC--------------C---HHHHHHHHHHHHHHHHHHHHhc
Confidence 556666666666666665544310 00 0 01222 222222 33445
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHH
Q 026244 178 QGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKN 224 (241)
Q Consensus 178 ~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~ 224 (241)
-+.+.|-..|...+-.|+.+-.+|+.=-.-++.+-..+..+-+.+..
T Consensus 389 ~~~~~L~k~V~~~~leaq~~~~slek~~~~~~sl~~~i~~~~~~i~~ 435 (622)
T COG5185 389 IQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLIQNITRSRSQIGH 435 (622)
T ss_pred chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHhh
Confidence 56778888999999999999999988777777776666665444443
No 83
>PRK00295 hypothetical protein; Provisional
Probab=28.78 E-value=2.1e+02 Score=20.00 Aligned_cols=23 Identities=17% Similarity=0.247 Sum_probs=12.6
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHH
Q 026244 171 MRKMKQDQGLDMISEGLDTLKNM 193 (241)
Q Consensus 171 q~~~eQD~~Ld~l~~~v~~lk~~ 193 (241)
..+.-|+..++.|..+|.++...
T Consensus 12 ~kla~qE~tie~Ln~~v~~Qq~~ 34 (68)
T PRK00295 12 SRQAFQDDTIQALNDVLVEQQRV 34 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566666666666555443
No 84
>PF08650 DASH_Dad4: DASH complex subunit Dad4; InterPro: IPR013959 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=28.68 E-value=1.6e+02 Score=21.09 Aligned_cols=26 Identities=19% Similarity=0.369 Sum_probs=11.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 026244 177 DQGLDMISEGLDTLKNMAHDMNEEVD 202 (241)
Q Consensus 177 D~~Ld~l~~~v~~lk~~a~~ig~El~ 202 (241)
-.-|..|-..|.+|.+--..|+.+|+
T Consensus 10 ~~LLsRIi~NvekLNEsv~~lN~~l~ 35 (72)
T PF08650_consen 10 SNLLSRIIGNVEKLNESVAELNQELE 35 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444443
No 85
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=28.60 E-value=3.2e+02 Score=22.13 Aligned_cols=36 Identities=31% Similarity=0.301 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhhHhHHHHHHH---HHhcCCCHHHHHH
Q 026244 70 NAEIRRTKARLLEEVPKLQRLAI---KKVKGLSTEELVA 105 (241)
Q Consensus 70 ~~eir~~l~~L~e~l~~L~~~l~---~~~~~l~~~E~~r 105 (241)
+.+++..+..|..++..|...+. .....++++|+.+
T Consensus 111 ~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~ 149 (169)
T PF07106_consen 111 NEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEK 149 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 46677777777777777766643 2234577777653
No 86
>PF12108 SF3a60_bindingd: Splicing factor SF3a60 binding domain; InterPro: IPR021966 This domain is found in eukaryotes. This domain is about 30 amino acids in length. This domain has a single completely conserved residue Y that may be functionally important. SF3a60 makes up the SF3a complex with SF3a66 and SF3a120. This domain is the binding site of SF3a60 for SF3a120. The SF3a complex is part of the spliceosome, a protein complex involved in splicing mRNA after transcription. ; PDB: 2DT7_A.
Probab=28.26 E-value=57 Score=19.03 Aligned_cols=14 Identities=36% Similarity=0.850 Sum_probs=7.6
Q ss_pred CCCCChHHHHHHHH
Q 026244 30 VSGDDAFARLYGAV 43 (241)
Q Consensus 30 ~~~~DpF~~~~~d~ 43 (241)
+++.|||...|.-+
T Consensus 3 is~~d~f~eFY~rl 16 (28)
T PF12108_consen 3 ISGGDPFSEFYERL 16 (28)
T ss_dssp --S--HHHHHHHHH
T ss_pred CCCCChHHHHHHHH
Confidence 56789999888543
No 87
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=27.83 E-value=8e+02 Score=26.51 Aligned_cols=51 Identities=10% Similarity=0.364 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHH
Q 026244 180 LDMISEGLDTLKNMA-HDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLK 230 (241)
Q Consensus 180 Ld~l~~~v~~lk~~a-~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~ 230 (241)
+|.+...|+.++.+- ..+|.++.+=..=+..|...|.....-+........
T Consensus 374 ~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~ 425 (1074)
T KOG0250|consen 374 VDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELN 425 (1074)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444433333 333333333333333333333333333333333333
No 88
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=27.74 E-value=3e+02 Score=21.54 Aligned_cols=84 Identities=15% Similarity=0.164 Sum_probs=43.2
Q ss_pred HHHHHHhhhhhcchhhhhccCCCCCChHHHHHHHHHHHHHHHH---HHHHH--hhhhhchhhHHHHHHHHHHHHHHHHhh
Q 026244 9 RVDSICKKYDKYDVEKQRETNVSGDDAFARLYGAVEADIEAAL---QKAES--ASNEKNRASVVALNAEIRRTKARLLEE 83 (241)
Q Consensus 9 r~~~~~~k~~~~~~~~~~~~~~~~~DpF~~~~~d~~~~l~~~~---~~~~~--~~~~~n~~~~~~~~~eir~~l~~L~e~ 83 (241)
|+..|.|+|-+|-..................+..+..++..+. .+... ....+-...+.....+|...+..+..+
T Consensus 17 ~l~~l~k~~~~~~~~~~~~~~~~~~e~~~~~~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ 96 (139)
T PF05615_consen 17 PLKRLLKRFLKWCNLSDSILSGQPSEESQFLYERLLKELAQFEFSILKSQLILEMNKRERENYEQLNEEIEQEIEQAKKE 96 (139)
T ss_pred hHHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677776664432211111112334444444444444432 11111 012222334667778888888888888
Q ss_pred HhHHHHHHH
Q 026244 84 VPKLQRLAI 92 (241)
Q Consensus 84 l~~L~~~l~ 92 (241)
+..|+.-+.
T Consensus 97 ie~lk~~L~ 105 (139)
T PF05615_consen 97 IEELKEELE 105 (139)
T ss_pred HHHHHHHHH
Confidence 888877765
No 89
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=27.33 E-value=3.6e+02 Score=22.38 Aligned_cols=59 Identities=12% Similarity=0.288 Sum_probs=46.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHHH
Q 026244 176 QDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVT 234 (241)
Q Consensus 176 QD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~ 234 (241)
-.+..+.+..++..|...+..+..+++.....|..+...+..-...+..-...+..++.
T Consensus 101 d~~~~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l~~D~~~l~~~~~~l~~~l~ 159 (184)
T PF05791_consen 101 DQKDKEDLKEIIEDLQDQIQKNQDKVQALINELNDFKDKLQKDSRNLKTDVDELQSILA 159 (184)
T ss_dssp HHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence 45667888888889999999999999998888888888877777777777666666654
No 90
>PRK00404 tatB sec-independent translocase; Provisional
Probab=26.25 E-value=3.5e+02 Score=21.89 Aligned_cols=37 Identities=22% Similarity=0.320 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHH
Q 026244 180 LDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDR 217 (241)
Q Consensus 180 Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~ 217 (241)
.-.++..++++|.....+-+|+++.-.+ +++...++.
T Consensus 29 aR~lG~~i~~~rr~~~~~k~ei~~E~~~-~elr~~l~~ 65 (141)
T PRK00404 29 ARTAGLWIGRLKRSFNAIKQEVEREIGA-DEIRRQLHN 65 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCH-HHHHHHHHH
Confidence 3456666777777777777777776665 666665555
No 91
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=26.17 E-value=2.6e+02 Score=20.29 Aligned_cols=52 Identities=15% Similarity=0.249 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHH
Q 026244 180 LDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHT 232 (241)
Q Consensus 180 Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~ 232 (241)
|-.|...|..|..+...+|.-- +=.++-+.|..-+..+...+......++++
T Consensus 5 l~~in~~v~~l~k~~~~lGt~~-Ds~~lR~~i~~~~~~~~~l~k~~~~~l~~l 56 (102)
T PF14523_consen 5 LFKINQNVSQLEKLVNQLGTPR-DSQELREKIHQLIQKTNQLIKEISELLKKL 56 (102)
T ss_dssp HHHHHHHHHHHHHHHHHH-SSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555432 222344444444444444444444444443
No 92
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=25.07 E-value=4.8e+02 Score=26.64 Aligned_cols=50 Identities=12% Similarity=0.221 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhhhhhcchhhhhccCCCCCChHHHHHHHHHHHHHHHHHHH
Q 026244 5 DILTRVDSICKKYDKYDVEKQRETNVSGDDAFARLYGAVEADIEAALQKA 54 (241)
Q Consensus 5 d~~~r~~~~~~k~~~~~~~~~~~~~~~~~DpF~~~~~d~~~~l~~~~~~~ 54 (241)
+|..|=..|++||.+...|...=...-++|.|..||.-+..++..+..-.
T Consensus 239 ~L~~r~~~L~~k~~~L~~e~~~LK~ELiedRW~~vFr~l~~q~~~m~esv 288 (683)
T PF08580_consen 239 ELEDRYERLEKKWKKLEKEAESLKKELIEDRWNIVFRNLGRQAQKMCESV 288 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 56778889999998777764332223467999999999998887775443
No 93
>PRK13677 hypothetical protein; Provisional
Probab=23.92 E-value=2.7e+02 Score=21.95 Aligned_cols=45 Identities=18% Similarity=0.314 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHH
Q 026244 186 GLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLK 230 (241)
Q Consensus 186 ~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~ 230 (241)
.|..|-.+...-..|.+.-..+|++|.+-=--+++++.-....+.
T Consensus 79 vidELd~i~~~~~~e~d~K~kiL~dLrHLE~Vv~~KIaEIe~dLe 123 (125)
T PRK13677 79 VIDELDQICQRDREEVDLKRKILDDLRHLESVVANKISEIEADLE 123 (125)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444445555567777777777777666556666655544443
No 94
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=23.74 E-value=3e+02 Score=20.23 Aligned_cols=55 Identities=11% Similarity=0.213 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHHH
Q 026244 180 LDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVT 234 (241)
Q Consensus 180 Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~ 234 (241)
-+.+..-|..|..-=..+-.||+....-...+...-..+..+|..++..++-||.
T Consensus 34 ~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir~vL~ 88 (89)
T PF13747_consen 34 RDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETIRAVLD 88 (89)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3666666666666666677888888888888888888888888888888877764
No 95
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=23.71 E-value=3e+02 Score=20.24 Aligned_cols=35 Identities=9% Similarity=0.201 Sum_probs=16.1
Q ss_pred HHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHHHHh
Q 026244 202 DRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQV 236 (241)
Q Consensus 202 ~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~k~ 236 (241)
..-|.+||.|+.-+|....|-.....+++.+|..-
T Consensus 29 ~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesn 63 (83)
T PF03670_consen 29 AAINSMLDQLNSCLDHLEQRNDHLHAQLQELLESN 63 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 33344444444444444444444444444454443
No 96
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=23.64 E-value=2.6e+02 Score=19.42 Aligned_cols=73 Identities=16% Similarity=0.184 Sum_probs=49.0
Q ss_pred HHHHHhhhhhcchhhhhccCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHhhHhHHHH
Q 026244 10 VDSICKKYDKYDVEKQRETNVSGDDAFARLYGAVEADIEAALQKAESASNEKNRASVVALNAEIRRTKARLLEEVPKLQR 89 (241)
Q Consensus 10 ~~~~~~k~~~~~~~~~~~~~~~~~DpF~~~~~d~~~~l~~~~~~~~~~~~~~n~~~~~~~~~eir~~l~~L~e~l~~L~~ 89 (241)
++.|+.++..+.. .++ +..-.....+...|..+...+....-+.+..+ .+....+...+.....+|..|++
T Consensus 5 ~~~i~~~l~~~~~-------~~~-~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p-~s~r~~~~~kl~~yr~~l~~lk~ 75 (79)
T PF05008_consen 5 TAEIKSKLERIKN-------LSG-EQRKSLIREIERDLDEAEELLKQMELEVRSLP-PSERNQYKSKLRSYRSELKKLKK 75 (79)
T ss_dssp HHHHHHHHHHGGG-------S-C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc-------cCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777755541 222 78888888888888887766666665655543 34567777788888888888876
Q ss_pred HH
Q 026244 90 LA 91 (241)
Q Consensus 90 ~l 91 (241)
.+
T Consensus 76 ~l 77 (79)
T PF05008_consen 76 EL 77 (79)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 97
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=23.59 E-value=2.8e+02 Score=19.81 Aligned_cols=16 Identities=13% Similarity=0.329 Sum_probs=6.8
Q ss_pred HHhhhHHHHHHhHHHh
Q 026244 203 RQVPLMDEIDTKVDRA 218 (241)
Q Consensus 203 ~Q~~lLd~l~~~vD~~ 218 (241)
+-.+-|++|.+..+..
T Consensus 28 ~Rge~L~~L~~kt~~L 43 (89)
T PF00957_consen 28 ERGEKLEELEDKTEEL 43 (89)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HcCchHHHHHHHHHHH
Confidence 3334444444444433
No 98
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=23.43 E-value=3.8e+02 Score=23.10 Aligned_cols=56 Identities=18% Similarity=0.271 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHH
Q 026244 178 QGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTV 233 (241)
Q Consensus 178 ~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l 233 (241)
+.+..+...+.....-+...-.|+..-+.-|..|++..+++..+|..+..|+..+-
T Consensus 15 ~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e 70 (237)
T PF00261_consen 15 ERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAE 70 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 33444444444444455555556666666666666666666666666665555443
No 99
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=23.34 E-value=4.7e+02 Score=23.80 Aligned_cols=22 Identities=0% Similarity=0.146 Sum_probs=11.0
Q ss_pred HHHhHHHhhhHHHHHHHHHHHH
Q 026244 211 IDTKVDRATADLKNTNVRLKHT 232 (241)
Q Consensus 211 l~~~vD~~~~~L~~~~~r~~~~ 232 (241)
.-+.+...+.|+..+..|+.+|
T Consensus 48 ~~~~l~~i~~Ri~~~qaKi~~l 69 (297)
T PF11945_consen 48 NRERLQAIQQRIEVAQAKIEKL 69 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555544
No 100
>PRK15344 type III secretion system needle protein SsaG; Provisional
Probab=23.03 E-value=1.2e+02 Score=21.65 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 026244 182 MISEGLDTLKNMAHDMNEEVDRQVP 206 (241)
Q Consensus 182 ~l~~~v~~lk~~a~~ig~El~~Q~~ 206 (241)
.|+..|+.|++++..+|+++..+-.
T Consensus 2 ~i~~~~~~L~~~~~~~~q~vq~~m~ 26 (71)
T PRK15344 2 DIAQLVDMLSHMAHQAGQAINDKMN 26 (71)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3778899999999999999987543
No 101
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=22.27 E-value=3.2e+02 Score=20.02 Aligned_cols=35 Identities=9% Similarity=0.204 Sum_probs=25.2
Q ss_pred HhhhHHHHHHhHHHhhhHHHHHHHHHHHHHHHhcc
Q 026244 204 QVPLMDEIDTKVDRATADLKNTNVRLKHTVTQVMT 238 (241)
Q Consensus 204 Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~k~r~ 238 (241)
...||..|+..-......|......+..-+.++++
T Consensus 59 e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l~~l~~ 93 (127)
T smart00502 59 KKQLLEDLEEQKENKLKVLEQQLESLTQKQEKLSH 93 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888887777777777777777776666543
No 102
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=22.00 E-value=2.3e+02 Score=26.41 Aligned_cols=31 Identities=13% Similarity=0.363 Sum_probs=11.7
Q ss_pred HHHHHHHHhhhHHHHHHhHHHhhhHHHHHHH
Q 026244 197 MNEEVDRQVPLMDEIDTKVDRATADLKNTNV 227 (241)
Q Consensus 197 ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~ 227 (241)
++.-+++=.+-+.++++.+......+....+
T Consensus 142 l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k 172 (370)
T PF02994_consen 142 LNSRIDELEERISELEDRIEEIEQAIKELEK 172 (370)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhhHHHHHHH
Confidence 3333443344444444444444443333333
No 103
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=21.14 E-value=1.2e+02 Score=23.18 Aligned_cols=59 Identities=17% Similarity=0.275 Sum_probs=21.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHH
Q 026244 175 KQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTV 233 (241)
Q Consensus 175 eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l 233 (241)
+-|..|+.|...+..|...-.....++..-+.-|..+..........|..+.+....+.
T Consensus 22 eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~aq~~a~~~~ 80 (131)
T PF05103_consen 22 EVDDFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQAQETADEIK 80 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT--------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhhhhhHHHHH
Confidence 45666777777777776666666666666666666666555555555554444444433
No 104
>COG2739 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.99 E-value=88 Score=24.02 Aligned_cols=17 Identities=24% Similarity=0.599 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHhhhh
Q 026244 2 SVIDILTRVDSICKKYD 18 (241)
Q Consensus 2 ~~~d~~~r~~~~~~k~~ 18 (241)
.|.|-|+|+.+++-+|+
T Consensus 49 AIyDnIKr~~~~L~~YE 65 (105)
T COG2739 49 AIYDNIKRTEKILEDYE 65 (105)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 58899999999999994
No 105
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=20.71 E-value=4.9e+02 Score=21.55 Aligned_cols=106 Identities=14% Similarity=0.174 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhhhhhcchhhhhccCCCCCCh-HHHHHHHHHHHHHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHhh
Q 026244 5 DILTRVDSICKKYDKYDVEKQRETNVSGDDA-FARLYGAVEADIEAALQKAESASNEKNRASVVALNAEIRRTKARLLEE 83 (241)
Q Consensus 5 d~~~r~~~~~~k~~~~~~~~~~~~~~~~~Dp-F~~~~~d~~~~l~~~~~~~~~~~~~~n~~~~~~~~~eir~~l~~L~e~ 83 (241)
|=+.|..-||.-+.-+++.... .+..|| |+-..=++.+.|..+ ....+......+..+++..+..+...
T Consensus 64 dPl~RA~YLL~L~~g~~~~~e~---~~~~d~~fLme~ME~rE~lee~-------~~~~d~~~L~~l~~~v~~~~~~~~~~ 133 (173)
T PRK01773 64 DPILRAEAIIALNTGEQQNLEE---KSTQDMAFLMQQMEWREQLEEI-------EQQQDEDALTAFSKEIKQEQQAILTE 133 (173)
T ss_pred ChHHHHHHHHHhccCCCCCccc---ccCCCHHHHHHHHHHHHHHHhh-------cccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888877555542111 123354 443333344444433 22233334455566666665555333
Q ss_pred HhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhh
Q 026244 84 VPKLQRLAIKKVKGLSTEELVARNDLVLALPDRIQAIPDGT 124 (241)
Q Consensus 84 l~~L~~~l~~~~~~l~~~E~~rR~~~v~~L~~~i~~l~~~~ 124 (241)
|. ..+.... --......+|-.++..+..+|....+.+
T Consensus 134 l~---~~~~~~d-~~~A~~~~~rL~y~~kl~~ei~~~~~~l 170 (173)
T PRK01773 134 LS---TALNSQQ-WQQASQINDRLRFIKKLIIEIERVEEKL 170 (173)
T ss_pred HH---HHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33 2222110 1134567888899999999998876654
No 106
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=20.70 E-value=2.4e+02 Score=22.47 Aligned_cols=38 Identities=16% Similarity=0.278 Sum_probs=32.4
Q ss_pred HHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHHHHhcc
Q 026244 201 VDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQVMT 238 (241)
Q Consensus 201 l~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~k~r~ 238 (241)
=++|...|..|......+...+..+-++...++++++.
T Consensus 99 ee~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~ 136 (144)
T PF11221_consen 99 EEEQLKRIKELEEENEEAEEELQEAVKEAEELLKQVQE 136 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788899999999999999999999988888888753
No 107
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=20.59 E-value=4.6e+02 Score=22.48 Aligned_cols=65 Identities=8% Similarity=0.245 Sum_probs=51.0
Q ss_pred HhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHHHHhcc
Q 026244 174 MKQDQGLDMISEGL-DTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQVMT 238 (241)
Q Consensus 174 ~eQD~~Ld~l~~~v-~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~k~r~ 238 (241)
...++.|+.....- +.+...-..++.++..-+.-++.++..++.-..+|..-=..|..++.+|.+
T Consensus 174 ~~l~~~l~~~~~~~~G~i~~~~~~l~~~~~~~~~~i~~~~~rl~~~~~~l~~qf~~me~~i~~lns 239 (239)
T PF07195_consen 174 TRLNDYLDSYTGSSTGSITSRIDSLNSQIKSLDKQIEDLEERLESKEERLRKQFSAMESLISQLNS 239 (239)
T ss_pred HHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33455566555555 777777788888888888999999999999999998888888888888753
No 108
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=20.47 E-value=8.3e+02 Score=24.05 Aligned_cols=48 Identities=10% Similarity=0.137 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhhhhhcchhhhhc----------cC-CCCCChHHHHHHHHHHHHHHHH
Q 026244 4 IDILTRVDSICKKYDKYDVEKQRE----------TN-VSGDDAFARLYGAVEADIEAAL 51 (241)
Q Consensus 4 ~d~~~r~~~~~~k~~~~~~~~~~~----------~~-~~~~DpF~~~~~d~~~~l~~~~ 51 (241)
-++|.++=.|+++|.+.-|+--.+ .+ .=..+.+...+..+.++|...+
T Consensus 211 ~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~ 269 (569)
T PRK04778 211 EQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDENL 269 (569)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHH
Confidence 456777878888888866542111 11 1134567777777777777754
No 109
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=20.17 E-value=1.1e+03 Score=25.54 Aligned_cols=199 Identities=12% Similarity=0.165 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhcchh--hhhccCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhchhh------HHHHHHHHHHHHHHH
Q 026244 9 RVDSICKKYDKYDVE--KQRETNVSGDDAFARLYGAVEADIEAALQKAESASNEKNRAS------VVALNAEIRRTKARL 80 (241)
Q Consensus 9 r~~~~~~k~~~~~~~--~~~~~~~~~~DpF~~~~~d~~~~l~~~~~~~~~~~~~~n~~~------~~~~~~eir~~l~~L 80 (241)
+++.|..+|.+|+-. ..-...+....-|..-...+...+..+..+...+...-+..- .......++..+..+
T Consensus 328 ~L~~i~~~~~~ye~~~i~~~~~~~~~l~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l~~~~~~~~~~~~~~~~~~ 407 (1201)
T PF12128_consen 328 ELDEIEQQKKDYEDADIEQLIARVDQLPEWRNELENLQEQLDLLTSKHQDIESKYNKLKQKLEEAFNRQQERLQAQQDEI 407 (1201)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCCCCCCCccccccCCCCCCCchhhhcch
Q 026244 81 LEEVPKLQRLAIKKVKGLSTEELVARNDLVLALPDRIQAIPDGTAAAPKQSGGWGASASRTEIKFDSDGRFDDEYFQQTE 160 (241)
Q Consensus 81 ~e~l~~L~~~l~~~~~~l~~~E~~rR~~~v~~L~~~i~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~te 160 (241)
.++...+..........+-..=-.........+..+...+...+..-...- ..+..++
T Consensus 408 ~e~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~----------------------~~~~~~~ 465 (1201)
T PF12128_consen 408 REEKAERREQIEEEYQALEQELRQQSQEQLEELQEQREQLKSELAELKQQL----------------------KNPQYTE 465 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------hCcCCCH
Q ss_pred hhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHH
Q 026244 161 ESSQFRQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRL 229 (241)
Q Consensus 161 ~t~~~~q~~qq~~~eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~ 229 (241)
+...=....+.......+.+......+..++..-.....+-+.+..-|..+...+.....++......+
T Consensus 466 e~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L 534 (1201)
T PF12128_consen 466 EEKEQLEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQL 534 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 110
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=20.12 E-value=5.7e+02 Score=22.01 Aligned_cols=67 Identities=12% Similarity=0.273 Sum_probs=50.8
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHHHHh
Q 026244 170 EMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQV 236 (241)
Q Consensus 170 qq~~~eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~k~ 236 (241)
+......|+.|+.|..-|...+.++.....-+++-..=|..+..+.+++..|+..+-.++..+-..+
T Consensus 84 E~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el 150 (237)
T PF00261_consen 84 ENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEEL 150 (237)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHH
Confidence 4456667888888888888888888888888887777777777777777777777777776665444
No 111
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=20.05 E-value=4.8e+02 Score=21.12 Aligned_cols=55 Identities=11% Similarity=0.317 Sum_probs=26.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHH
Q 026244 177 DQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKH 231 (241)
Q Consensus 177 D~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~ 231 (241)
.+.|..|...+..+......|..-...|..-+..+...+.............+..
T Consensus 134 ~~~l~~i~~~~~~i~~~i~~i~~~~~~~~~~~~~i~~~i~~i~~~~~~~~~~~~~ 188 (213)
T PF00015_consen 134 SESLEEIAESVEEISDSIEEISESAEEQSESIEQINESIEEISEISEQISASSEE 188 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhhhHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444445555555555555555555554444444444444333
No 112
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=20.02 E-value=4.5e+02 Score=20.80 Aligned_cols=33 Identities=12% Similarity=0.424 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHH
Q 026244 185 EGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDR 217 (241)
Q Consensus 185 ~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~ 217 (241)
.-|..++.=-..|+.+++.=..+.-.|+.+++.
T Consensus 89 ~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ 121 (126)
T PF07889_consen 89 DEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDE 121 (126)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444444444443
Done!