Query 026244
Match_columns 241
No_of_seqs 210 out of 650
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 08:58:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026244.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026244hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nps_D Syntaxin-6; vesicle fus 99.8 5.9E-19 2E-23 129.2 8.9 72 167-238 8-79 (82)
2 1gl2_D Syntaxin 8, vesicle tra 99.7 4.8E-18 1.6E-22 119.0 7.2 64 171-234 2-65 (65)
3 1sfc_D Protein (SNAP-25B), pro 99.7 7.2E-17 2.5E-21 119.3 8.0 65 171-235 22-86 (87)
4 1n7s_D SNAP-25A; neuronal snar 99.7 7.3E-17 2.5E-21 113.3 7.5 62 172-233 4-65 (66)
5 1l4a_D S-SNAP25 fusion protein 99.7 9.8E-17 3.4E-21 118.5 6.5 64 172-235 24-87 (87)
6 3b5n_D Protein transport prote 99.6 2.2E-15 7.4E-20 105.0 8.1 61 172-232 4-64 (64)
7 4dnd_A Syntaxin-10, SYN10; str 99.1 6.3E-10 2.2E-14 87.7 12.6 94 32-125 25-129 (130)
8 2c5k_T Syntaxin TLG1, T-snare 99.1 1.3E-10 4.5E-15 86.8 7.8 88 33-125 5-92 (95)
9 3hd7_B Syntaxin-1A; membrane p 97.8 0.00012 4.1E-09 55.6 9.6 66 172-237 15-80 (109)
10 2nps_B Syntaxin 13, vesicle-as 97.2 0.0035 1.2E-07 43.7 9.4 63 177-239 5-67 (71)
11 1jth_B Syntaxin 1A; coiled-coi 97.1 0.0039 1.3E-07 44.1 9.4 66 173-238 5-70 (77)
12 3b5n_B Protein SSO1; snare com 97.0 0.0087 3E-07 41.4 10.1 63 173-235 5-67 (69)
13 1sfc_B Protein (syntaxin 1A), 96.8 0.01 3.4E-07 42.6 9.5 66 173-238 16-81 (83)
14 1gl2_B Syntaxin 7; membrane pr 96.8 0.007 2.4E-07 41.4 8.2 57 175-231 6-62 (65)
15 1n7s_B Syntaxin 1A; neuronal s 96.7 0.015 5.1E-07 40.1 9.3 60 173-232 7-66 (68)
16 2xhe_B Syntaxin1; exocytosis, 96.6 0.011 3.9E-07 51.4 10.0 196 34-238 44-277 (279)
17 1dn1_B Syntaxin 1A, syntaxin b 96.3 0.041 1.4E-06 47.7 11.7 197 34-237 31-259 (267)
18 1n7s_C SNAP-25A; neuronal snar 95.0 0.4 1.4E-05 33.9 10.6 63 170-232 12-77 (79)
19 1nhl_A Synaptosomal-associated 93.1 0.31 1.1E-05 31.9 6.3 45 186-230 8-52 (54)
20 3b5n_C Protein transport prote 92.1 1.4 4.8E-05 30.4 8.8 58 175-232 6-66 (70)
21 2nps_C Vesicle transport throu 91.5 2.6 8.8E-05 29.7 9.9 65 172-236 13-77 (81)
22 1l4a_C S-SNAP25 fusion protein 91.1 0.5 1.7E-05 33.8 5.8 62 170-231 16-80 (83)
23 1gl2_C VTI1B, vesicle transpor 88.2 2.7 9.4E-05 28.3 7.5 56 177-232 8-63 (65)
24 3c98_B Syntaxin-1A; protein co 82.7 1.4 4.9E-05 36.7 4.8 61 172-232 206-266 (279)
25 1s94_A S-syntaxin; three helix 79.4 18 0.00063 28.6 10.2 57 69-125 86-143 (180)
26 1ez3_A Syntaxin-1A; three heli 74.7 23 0.00078 26.1 11.7 92 34-125 8-112 (127)
27 2l3l_A Tubulin-specific chaper 74.3 21 0.00072 26.5 8.5 76 33-125 33-108 (111)
28 3ghg_A Fibrinogen alpha chain; 65.1 33 0.0011 32.3 9.3 17 4-20 60-76 (562)
29 1g6u_A Domain swapped dimer; d 56.5 31 0.0011 21.0 6.1 41 78-124 3-43 (48)
30 3swy_A Cyclic nucleotide-gated 48.4 23 0.00078 22.2 3.7 29 210-238 2-30 (46)
31 1fio_A SSO1 protein; four heli 46.7 89 0.0031 24.5 8.2 89 35-124 6-100 (196)
32 2dfs_A Myosin-5A; myosin-V, in 41.7 3E+02 0.01 28.1 16.1 30 177-206 1022-1051(1080)
33 1qoy_A Hemolysin E; toxin, mem 36.9 29 0.00098 30.5 3.8 61 177-238 22-82 (318)
34 1ic2_A Tropomyosin alpha chain 31.9 1.2E+02 0.0042 20.7 9.3 63 170-232 9-74 (81)
35 3efg_A Protein SLYX homolog; x 31.8 83 0.0028 21.7 4.9 29 196-224 32-60 (78)
36 3zrx_A AF1503 protein, osmolar 31.8 1.1E+02 0.0039 20.3 8.7 46 192-237 66-111 (115)
37 3swf_A CGMP-gated cation chann 31.1 38 0.0013 23.4 2.9 26 211-236 5-30 (74)
38 3efg_A Protein SLYX homolog; x 30.7 1.3E+02 0.0045 20.6 6.2 24 170-193 20-43 (78)
39 3a7p_A Autophagy protein 16; c 29.9 2E+02 0.0068 22.5 9.1 58 177-234 67-124 (152)
40 3kz5_E Protein SOPB; partition 29.6 29 0.001 22.2 2.0 16 5-20 35-50 (52)
41 3vkg_A Dynein heavy chain, cyt 29.2 7.3E+02 0.025 28.8 17.2 51 175-232 2032-2082(3245)
42 4fi5_A Nucleoprotein; structur 26.3 2E+02 0.0068 21.3 6.8 60 66-125 24-86 (113)
43 3p8c_D Wiskott-aldrich syndrom 24.7 3.2E+02 0.011 23.4 8.3 33 204-236 48-80 (279)
44 1jcd_A Major outer membrane li 24.0 1.5E+02 0.005 18.9 7.1 17 214-230 33-49 (52)
45 1ykh_B RNA polymerase II holoe 23.7 1.3E+02 0.0043 22.8 5.1 38 201-238 87-124 (132)
46 2np0_B Synaptotagmin-2; botuli 23.0 81 0.0028 17.0 2.8 20 31-50 3-22 (26)
47 1yke_B RNA polymerase II holoe 22.0 1.4E+02 0.0047 23.2 5.1 38 201-238 87-124 (151)
48 3oja_A Leucine-rich immune mol 21.0 4.4E+02 0.015 23.4 11.4 63 172-234 422-484 (487)
49 3twe_A Alpha4H; unknown functi 20.5 1.1E+02 0.0038 16.3 3.5 19 220-238 8-26 (27)
No 1
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=99.78 E-value=5.9e-19 Score=129.17 Aligned_cols=72 Identities=18% Similarity=0.321 Sum_probs=60.5
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHHHHhcc
Q 026244 167 QEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQVMT 238 (241)
Q Consensus 167 q~~qq~~~eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~k~r~ 238 (241)
|.|++++++||+.||.|+.+|++||+||.+||+||+.||+|||+|+++||++..+|..+++|+++++++.++
T Consensus 8 q~Q~~~~~eQD~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~~~~ 79 (82)
T 2nps_D 8 TGGNNMGRMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHMTSD 79 (82)
T ss_dssp ----------CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 667788999999999999999999999999999999999999999999999999999999999999998754
No 2
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.73 E-value=4.8e-18 Score=118.98 Aligned_cols=64 Identities=23% Similarity=0.399 Sum_probs=53.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHHH
Q 026244 171 MRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVT 234 (241)
Q Consensus 171 q~~~eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~ 234 (241)
++|++||++||.|+.+|++||++|.+||+||+.||+|||+|+++||++..+|..+++|+++|++
T Consensus 2 ~~~~eqD~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~l~k 65 (65)
T 1gl2_D 2 SHMQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTLVDR 65 (65)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4689999999999999999999999999999999999999999999999999999999999864
No 3
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.68 E-value=7.2e-17 Score=119.29 Aligned_cols=65 Identities=28% Similarity=0.408 Sum_probs=61.5
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHHHH
Q 026244 171 MRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQ 235 (241)
Q Consensus 171 q~~~eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~k 235 (241)
.+..+||+.||.|+.+|++||+||.+||+||+.||++||+|+++||+++.+|..+++|+++|+++
T Consensus 22 ~~e~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ll~k 86 (87)
T 1sfc_D 22 ARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLGS 86 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhC
Confidence 35779999999999999999999999999999999999999999999999999999999999865
No 4
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=99.68 E-value=7.3e-17 Score=113.26 Aligned_cols=62 Identities=29% Similarity=0.436 Sum_probs=59.8
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHH
Q 026244 172 RKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTV 233 (241)
Q Consensus 172 ~~~eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l 233 (241)
+..+||+.|+.|+.+|++||+||.+||+||+.||++||+|+++||+++.+|..+++|+++++
T Consensus 4 ~e~eqD~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~ll 65 (66)
T 1n7s_D 4 RENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKML 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHc
Confidence 35689999999999999999999999999999999999999999999999999999999986
No 5
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=99.66 E-value=9.8e-17 Score=118.52 Aligned_cols=64 Identities=22% Similarity=0.371 Sum_probs=60.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHHHH
Q 026244 172 RKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQ 235 (241)
Q Consensus 172 ~~~eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~k 235 (241)
+..+||++||.|+.+|++||+||.+||+||+.||++||+|+++||+++.+|..+|+|+++|+++
T Consensus 24 ~e~eqD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~kll~k 87 (87)
T 1l4a_D 24 REDDMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATKLLKN 87 (87)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHCC--
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3568999999999999999999999999999999999999999999999999999999999874
No 6
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=99.60 E-value=2.2e-15 Score=105.00 Aligned_cols=61 Identities=26% Similarity=0.358 Sum_probs=58.2
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHH
Q 026244 172 RKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHT 232 (241)
Q Consensus 172 ~~~eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~ 232 (241)
+-.+||+.|+.|+.+|++||+||.+||+||+.||++||.|+.+||+++.+|..+++||+++
T Consensus 4 ~E~e~D~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~Rl~~i 64 (64)
T 3b5n_D 4 MELEIDRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRLAGI 64 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3568999999999999999999999999999999999999999999999999999999864
No 7
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=99.14 E-value=6.3e-10 Score=87.72 Aligned_cols=94 Identities=16% Similarity=0.131 Sum_probs=76.0
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHhhhhh------chhhHHHHHHHHHHHHHHHHhhHhHHHHHHHH-----HhcCCCH
Q 026244 32 GDDAFARLYGAVEADIEAALQKAESASNEK------NRASVVALNAEIRRTKARLLEEVPKLQRLAIK-----KVKGLST 100 (241)
Q Consensus 32 ~~DpF~~~~~d~~~~l~~~~~~~~~~~~~~------n~~~~~~~~~eir~~l~~L~e~l~~L~~~l~~-----~~~~l~~ 100 (241)
..|||..|..||...|..+..........+ +++.......+|+..+..+..+|.+|.+++.. ..++|++
T Consensus 25 ~~DPF~~Vk~EVq~sl~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np~kF~l~~ 104 (130)
T 4dnd_A 25 LEDPFFVVRGEVQKAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDLEDLEETIGIVEANPGKFKLPA 104 (130)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhcCCCH
Confidence 469999999999999999877666654332 23345677899999999999999999999642 2368999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhc
Q 026244 101 EELVARNDLVLALPDRIQAIPDGTA 125 (241)
Q Consensus 101 ~E~~rR~~~v~~L~~~i~~l~~~~~ 125 (241)
.|+.+|+.||.+++.+|..|+..++
T Consensus 105 ~Ei~~Rr~fV~~~r~~I~~mk~~l~ 129 (130)
T 4dnd_A 105 GDLQERKVFVERMREAVQEMKDHMV 129 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999998764
No 8
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=99.13 E-value=1.3e-10 Score=86.85 Aligned_cols=88 Identities=16% Similarity=0.196 Sum_probs=72.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHhhHhHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 026244 33 DDAFARLYGAVEADIEAALQKAESASNEKNRASVVALNAEIRRTKARLLEEVPKLQRLAIKKVKGLSTEELVARNDLVLA 112 (241)
Q Consensus 33 ~DpF~~~~~d~~~~l~~~~~~~~~~~~~~n~~~~~~~~~eir~~l~~L~e~l~~L~~~l~~~~~~l~~~E~~rR~~~v~~ 112 (241)
.|||.+|++|+.++|..+...+.+ ++.++......+++..+..|.++|.+|.+++....+. ++.|+.+|+.||.+
T Consensus 5 ~DPF~~V~~D~~~ql~~l~~~~~~----~~~~~~~~~~~El~~~l~el~e~l~DL~~SI~i~e~~-~~~EI~~Rk~~v~~ 79 (95)
T 2c5k_T 5 EDPFQQVVKDTKEQLNRINNYITR----HNTAGDDDQEEEIQDILKDVEETIVDLDRSIIVMKRD-ENEDVSGREAQVKN 79 (95)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH----TCCC--CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTS-TTCCCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHH----ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Confidence 599999999999999999877554 2222223567999999999999999999997533333 99999999999999
Q ss_pred HHHHHHhhhhhhc
Q 026244 113 LPDRIQAIPDGTA 125 (241)
Q Consensus 113 L~~~i~~l~~~~~ 125 (241)
++.+++.|+..++
T Consensus 80 l~~~i~~lk~~~~ 92 (95)
T 2c5k_T 80 IKQQLDALKLRFD 92 (95)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998875
No 9
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=97.83 E-value=0.00012 Score=55.63 Aligned_cols=66 Identities=18% Similarity=0.217 Sum_probs=60.8
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHHHHhc
Q 026244 172 RKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQVM 237 (241)
Q Consensus 172 ~~~eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~k~r 237 (241)
..++.++.+..|..++..|+++-..|+..+.+|.++||.++..|+.+...+..+++.+++-.+.-+
T Consensus 15 ~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk 80 (109)
T 3hd7_B 15 EIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQS 80 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788899999999999999999999999999999999999999999999999999988765543
No 10
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=97.18 E-value=0.0035 Score=43.67 Aligned_cols=63 Identities=11% Similarity=0.239 Sum_probs=57.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHHHHhccc
Q 026244 177 DQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQVMTF 239 (241)
Q Consensus 177 D~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~k~r~~ 239 (241)
.+.+..|..+|..|.+|=..|..=+.+|.++||.|+..|+.+...+..++..|.+-.+.-+++
T Consensus 5 ~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~ 67 (71)
T 2nps_B 5 ETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQKKS 67 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456788999999999999999999999999999999999999999999999999887766554
No 11
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=97.14 E-value=0.0039 Score=44.08 Aligned_cols=66 Identities=18% Similarity=0.216 Sum_probs=57.8
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHHHHhcc
Q 026244 173 KMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQVMT 238 (241)
Q Consensus 173 ~~eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~k~r~ 238 (241)
.++-.+.+..|..+|..|++|=..|..=+.+|.++||.|+..|+.+...+..++..+++-.+.-++
T Consensus 5 i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q~~ 70 (77)
T 1jth_B 5 IETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSK 70 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345567788999999999999999999999999999999999999999999999999987765544
No 12
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=97.02 E-value=0.0087 Score=41.42 Aligned_cols=63 Identities=24% Similarity=0.259 Sum_probs=57.0
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHHHH
Q 026244 173 KMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQ 235 (241)
Q Consensus 173 ~~eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~k 235 (241)
.++-...+..|..+|..|++|=..|..=+.+|.++||.|+..|+.+...+..++..+++-.+.
T Consensus 5 i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~ 67 (69)
T 3b5n_B 5 VQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVKS 67 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445567788999999999999999999999999999999999999999999999999886653
No 13
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=96.85 E-value=0.01 Score=42.62 Aligned_cols=66 Identities=18% Similarity=0.216 Sum_probs=59.1
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHHHHhcc
Q 026244 173 KMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQVMT 238 (241)
Q Consensus 173 ~~eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~k~r~ 238 (241)
.++-.+.+..|..+|..|++|=..|..=+.+|.++||.|+..|+.+...+..++..+++-.+.-++
T Consensus 16 i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~ 81 (83)
T 1sfc_B 16 IETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSK 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHc
Confidence 555667789999999999999999999999999999999999999999999999999987765544
No 14
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=96.84 E-value=0.007 Score=41.42 Aligned_cols=57 Identities=14% Similarity=0.360 Sum_probs=52.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHH
Q 026244 175 KQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKH 231 (241)
Q Consensus 175 eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~ 231 (241)
+-...+..|..+|..|++|=..|..=+.+|.++||.|+..|+.+...+..++..+++
T Consensus 6 eR~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~k 62 (65)
T 1gl2_B 6 ERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSR 62 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667899999999999999999999999999999999999999999999998876
No 15
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=96.72 E-value=0.015 Score=40.05 Aligned_cols=60 Identities=18% Similarity=0.242 Sum_probs=54.8
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHH
Q 026244 173 KMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHT 232 (241)
Q Consensus 173 ~~eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~ 232 (241)
.++-.+.+-.|..+|..|.+|=..|..=+.+|.++||.|+..|+.+...+..++..+++-
T Consensus 7 i~eR~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA 66 (68)
T 1n7s_B 7 IETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKA 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567788999999999999999999999999999999999999999999999988763
No 16
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=96.63 E-value=0.011 Score=51.39 Aligned_cols=196 Identities=13% Similarity=0.122 Sum_probs=99.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhhhh----chhh----------HHHHHHHHHHHHHHHHhhHhHHHHHHHHH--h--
Q 026244 34 DAFARLYGAVEADIEAALQKAESASNEK----NRAS----------VVALNAEIRRTKARLLEEVPKLQRLAIKK--V-- 95 (241)
Q Consensus 34 DpF~~~~~d~~~~l~~~~~~~~~~~~~~----n~~~----------~~~~~~eir~~l~~L~e~l~~L~~~l~~~--~-- 95 (241)
+.|.....++...|..+...+..+.... ..|. +..+..+|......+...|..|....... .
T Consensus 44 ~~F~~~~~~I~~~I~~i~~~l~~L~~l~~~~l~t~~~~~~~~~~~~ie~l~~~i~~~~~~i~~~lk~l~~~~~~~~~~~~ 123 (279)
T 2xhe_B 44 ADFFNRVKRIRDNIEDIEQAIEQVAQLHTESLVAVSKEDRDRLNEKLQDTMARISALGNKIRADLKQIEKENKRAQQEGT 123 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 3588888888888777755544332221 1111 12233444444444555555555442210 0
Q ss_pred --cCCCHHHHHHHHHHHHHHHHHHHhhhhhhccC-----------CCCCCCCCCCCCccccccCCCCCCCchhhhcchhh
Q 026244 96 --KGLSTEELVARNDLVLALPDRIQAIPDGTAAA-----------PKQSGGWGASASRTEIKFDSDGRFDDEYFQQTEES 162 (241)
Q Consensus 96 --~~l~~~E~~rR~~~v~~L~~~i~~l~~~~~~~-----------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~te~t 162 (241)
.+-+..|..-|+..+..|..++..+...|... ..+.....+ +... ........++...
T Consensus 124 ~~~~~~~~e~r~~k~~~~~L~~~f~~~~~~Fq~~Q~~y~e~~k~~~~R~~~i~~----~~~~-----~ee~~~~~e~g~~ 194 (279)
T 2xhe_B 124 FEDGTVSTDLRIRQSQHSSLSRKFVKVMTRYNDVQAENKRRYGENVARQCRVVE----PSLS-----DDAIQKVIEHGTE 194 (279)
T ss_dssp CSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCSSC----CCCS-----STTHHHHHHHC--
T ss_pred ccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCCC-----HHHHHHHHhCCch
Confidence 11222267789999999999988876654320 000000000 0000 0000000011111
Q ss_pred HHHHH----HHH---HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHHHH
Q 026244 163 SQFRQ----EYE---MRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQ 235 (241)
Q Consensus 163 ~~~~q----~~q---q~~~eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~k 235 (241)
..|.+ ..+ ..+++=.+.+-.|..+|..|++|=..|+.=+.+|.++||.|+..|+.+...+..++..|.+-.+.
T Consensus 195 ~~f~q~~~~~~~~~~~~i~eR~~eI~~Ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~~~~~v~~~~~~l~kA~~~ 274 (279)
T 2xhe_B 195 GIFSGMRLEGAEAKLNEIRDRHKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQARHY 274 (279)
T ss_dssp ---------------CTTTHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCSSTTCHHHHHHTCCCCC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12221 000 12445577899999999999999999999999999999999999999999999999999876654
Q ss_pred hcc
Q 026244 236 VMT 238 (241)
Q Consensus 236 ~r~ 238 (241)
-++
T Consensus 275 qk~ 277 (279)
T 2xhe_B 275 QES 277 (279)
T ss_dssp ---
T ss_pred hHc
Confidence 443
No 17
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=96.33 E-value=0.041 Score=47.68 Aligned_cols=197 Identities=14% Similarity=0.183 Sum_probs=107.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhhhhc----h--------hhHHHHHHHHHHHHHHHHhhHhHHHHHHHHH-hcCCCH
Q 026244 34 DAFARLYGAVEADIEAALQKAESASNEKN----R--------ASVVALNAEIRRTKARLLEEVPKLQRLAIKK-VKGLST 100 (241)
Q Consensus 34 DpF~~~~~d~~~~l~~~~~~~~~~~~~~n----~--------~~~~~~~~eir~~l~~L~e~l~~L~~~l~~~-~~~l~~ 100 (241)
+.|.....++...|..+......+....+ . .....+..+|......+...|..|...+... ...-++
T Consensus 31 ~~F~~~v~~I~~~I~~I~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~l~~~i~~~~~~i~~~Lk~l~~~~~~~~~~~~~~ 110 (267)
T 1dn1_B 31 DEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSS 110 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Confidence 66777777777777776544433221111 1 1123334555555555566666665553211 123456
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccC-------C-----C---CCCCCCCCCCccccc----cCCCCCCCchhhhcchh
Q 026244 101 EELVARNDLVLALPDRIQAIPDGTAAA-------P-----K---QSGGWGASASRTEIK----FDSDGRFDDEYFQQTEE 161 (241)
Q Consensus 101 ~E~~rR~~~v~~L~~~i~~l~~~~~~~-------~-----~---~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~te~ 161 (241)
.+.+-|+..+..|..++.++...+... . + -.+ ..+ +...+. .+...-+......++..
T Consensus 111 ~e~Rirk~q~~~L~~~f~~~m~~yq~~Q~~y~e~~k~~i~Rq~~i~~-~~~--tdeeie~~ie~g~~~~f~q~~l~~~~~ 187 (267)
T 1dn1_B 111 ADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEITG-RTT--TSEELEDMLESGNPAIFASGIIMDSSI 187 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCC--CHHHHHHHHHTCSSCTTTTTCCCCSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccC-CCC--CHHHHHHHHhCCcHHHHHHHHHHhhHH
Confidence 778889999999999888875554321 0 0 000 000 001110 00000010000011111
Q ss_pred hHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHHHHhc
Q 026244 162 SSQFRQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQVM 237 (241)
Q Consensus 162 t~~~~q~~qq~~~eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~k~r 237 (241)
+. ..-...++-...+-.|..+|..|++|=..|+.=+.+|+++||.|+..|+.+...+..++..+.+-.+.-+
T Consensus 188 ~~----~~l~~i~~R~~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~~~v~~~~~~l~kA~~~q~ 259 (267)
T 1dn1_B 188 SK----QALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQS 259 (267)
T ss_dssp HH----HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC-----------
T ss_pred HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1112355667789999999999999999999999999999999999999999999888888876655443
No 18
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=95.02 E-value=0.4 Score=33.90 Aligned_cols=63 Identities=17% Similarity=0.214 Sum_probs=52.0
Q ss_pred HHHHHhhhhhHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHH
Q 026244 170 EMRKMKQDQGLDMISEGLD---TLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHT 232 (241)
Q Consensus 170 qq~~~eQD~~Ld~l~~~v~---~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~ 232 (241)
+.....+++.++.+..++. .-..+|..+-.+|..|.+-|+.+...+|.++.-|..+.+-|+.+
T Consensus 12 ~~~~~~~~~s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~~m 77 (79)
T 1n7s_C 12 RRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKDL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHhhh
Confidence 4446667777777766655 55669999999999999999999999999999999998877765
No 19
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=93.10 E-value=0.31 Score=31.85 Aligned_cols=45 Identities=16% Similarity=0.190 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHH
Q 026244 186 GLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLK 230 (241)
Q Consensus 186 ~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~ 230 (241)
.+....++|...-.+|..|.+-|+.++..+|.+++-|+.+.+-|+
T Consensus 8 l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~ 52 (54)
T 1nhl_A 8 LAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLT 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHh
Confidence 345567788889999999999999999999999999999887664
No 20
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=92.14 E-value=1.4 Score=30.39 Aligned_cols=58 Identities=7% Similarity=0.135 Sum_probs=44.8
Q ss_pred hhhhhHHHHHHHHHHHHH---HHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHH
Q 026244 175 KQDQGLDMISEGLDTLKN---MAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHT 232 (241)
Q Consensus 175 eQD~~Ld~l~~~v~~lk~---~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~ 232 (241)
-+++.|+.-...+.-..+ .|..=-.+|..|.+.|+.++..+|..+..++.+.++++.+
T Consensus 6 ~~~esl~STrr~L~~a~e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~L 66 (70)
T 3b5n_C 6 TKQSSVASTRNTLKMAQDAERAGMNTLGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556655555544433 5555567899999999999999999999999999999876
No 21
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=91.49 E-value=2.6 Score=29.72 Aligned_cols=65 Identities=11% Similarity=0.166 Sum_probs=57.7
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHHHHh
Q 026244 172 RKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQV 236 (241)
Q Consensus 172 ~~~eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~k~ 236 (241)
.+..-.+.|..-...+....++|..|-++|..|.+-|......++.+++-|..+.+-|+.+...|
T Consensus 13 ~L~rt~~~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~~s~k~l~~M~rr~ 77 (81)
T 2nps_C 13 RLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILTGMLRRI 77 (81)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Confidence 34566677888888889999999999999999999999999999999999999998888877765
No 22
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=91.07 E-value=0.5 Score=33.80 Aligned_cols=62 Identities=18% Similarity=0.227 Sum_probs=50.0
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHH---HHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHH
Q 026244 170 EMRKMKQDQGLDMISEGLDTLKN---MAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKH 231 (241)
Q Consensus 170 qq~~~eQD~~Ld~l~~~v~~lk~---~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~ 231 (241)
+....-+++.|+.....+.-..+ .|..=-.+|..|.+.|+.++..+|..+..|+.+.+.|+.
T Consensus 16 ~~~~~~~~esl~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L~~ 80 (83)
T 1l4a_C 16 QQCNQVTDDSLESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNLEG 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCTTC
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44566788888888777765544 666667899999999999999999999999988776653
No 23
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=88.19 E-value=2.7 Score=28.27 Aligned_cols=56 Identities=11% Similarity=0.201 Sum_probs=47.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHH
Q 026244 177 DQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHT 232 (241)
Q Consensus 177 D~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~ 232 (241)
.+.|..-...+....++|..+-.+|..|.+-|......++.++.-|..+.+-|+.+
T Consensus 8 ~~~l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~~m 63 (65)
T 1gl2_C 8 TQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSM 63 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHHhh
Confidence 44566666777888999999999999999999999999999999999988666543
No 24
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=82.70 E-value=1.4 Score=36.74 Aligned_cols=61 Identities=18% Similarity=0.241 Sum_probs=48.2
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHH
Q 026244 172 RKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHT 232 (241)
Q Consensus 172 ~~~eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~ 232 (241)
...+-...|..|...|..+.++-..|..-+++|..+++.|+..|+.+...+..++..+.+-
T Consensus 206 ~i~~~~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv~~~~~~v~~~~~el~~A 266 (279)
T 3c98_B 206 EIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKA 266 (279)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677899999999999999999999999999999999999999877666555555443
No 25
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=79.44 E-value=18 Score=28.58 Aligned_cols=57 Identities=12% Similarity=0.179 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHhhHhHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 026244 69 LNAEIRRTKARLLEEVPKLQRLAIKK-VKGLSTEELVARNDLVLALPDRIQAIPDGTA 125 (241)
Q Consensus 69 ~~~eir~~l~~L~e~l~~L~~~l~~~-~~~l~~~E~~rR~~~v~~L~~~i~~l~~~~~ 125 (241)
+..+|...-..+...|..|+...... ..+-++.+.+-|+..+..|..++.++...+.
T Consensus 86 l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Rir~~q~~~L~~kf~~~m~~yq 143 (180)
T 1s94_A 86 LMTDIKRTANKVRGKLKTIELNIEQEEHSNKSSADLRIRKTQYSTISRKFVEVMSDYN 143 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC-----CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555566666665543211 1123455778899999999999999877765
No 26
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=74.71 E-value=23 Score=26.09 Aligned_cols=92 Identities=13% Similarity=0.182 Sum_probs=53.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhh-------hhch-----hhHHHHHHHHHHHHHHHHhhHhHHHHHHHHH-hcCCCH
Q 026244 34 DAFARLYGAVEADIEAALQKAESASN-------EKNR-----ASVVALNAEIRRTKARLLEEVPKLQRLAIKK-VKGLST 100 (241)
Q Consensus 34 DpF~~~~~d~~~~l~~~~~~~~~~~~-------~~n~-----~~~~~~~~eir~~l~~L~e~l~~L~~~l~~~-~~~l~~ 100 (241)
+.|.....++...|..+...+..+.. ..+. .....+..+|...-..+...|..|+...... ..+-+.
T Consensus 8 ~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s 87 (127)
T 1ez3_A 8 DEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSS 87 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCc
Confidence 45777777777776666433332211 1110 0122334555555556666666666553321 223456
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhc
Q 026244 101 EELVARNDLVLALPDRIQAIPDGTA 125 (241)
Q Consensus 101 ~E~~rR~~~v~~L~~~i~~l~~~~~ 125 (241)
.+.+-|+..+..|...+.++...+.
T Consensus 88 ~~~Rir~~q~~~L~~kf~e~m~~y~ 112 (127)
T 1ez3_A 88 ADLRIRKTQHSTLSRKFVEVMSEYN 112 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788899999999999998876654
No 27
>2l3l_A Tubulin-specific chaperone C; tubulin binding cofactor; NMR {Homo sapiens}
Probab=74.31 E-value=21 Score=26.53 Aligned_cols=76 Identities=17% Similarity=0.179 Sum_probs=59.9
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHhhHhHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 026244 33 DDAFARLYGAVEADIEAALQKAESASNEKNRASVVALNAEIRRTKARLLEEVPKLQRLAIKKVKGLSTEELVARNDLVLA 112 (241)
Q Consensus 33 ~DpF~~~~~d~~~~l~~~~~~~~~~~~~~n~~~~~~~~~eir~~l~~L~e~l~~L~~~l~~~~~~l~~~E~~rR~~~v~~ 112 (241)
.|.|..-|..-...|+..+... + +...+..+...|..|++.+.....=|++-++..-+.-|..
T Consensus 33 ~~~F~~~F~~~~~~Ie~~l~~~----------~-------~~~~ld~i~~~I~~Lqk~v~das~fLp~YD~R~~q~~i~~ 95 (111)
T 2l3l_A 33 SHFFVATFARERAAVEELLERA----------E-------SVERLEEAASRLQGLQKLINDSVFFLAAYDLRQGQEALAR 95 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC----------C-------SHHHHHHHHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcC----------c-------hhhHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHH
Confidence 4779988888778888775311 1 3445677788899999987766667999999999999999
Q ss_pred HHHHHHhhhhhhc
Q 026244 113 LPDRIQAIPDGTA 125 (241)
Q Consensus 113 L~~~i~~l~~~~~ 125 (241)
|...+++....+.
T Consensus 96 L~~~l~e~r~~l~ 108 (111)
T 2l3l_A 96 LQAALAERRRGLQ 108 (111)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhC
Confidence 9999999887663
No 28
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=65.06 E-value=33 Score=32.32 Aligned_cols=17 Identities=18% Similarity=0.364 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHhhhhhc
Q 026244 4 IDILTRVDSICKKYDKY 20 (241)
Q Consensus 4 ~d~~~r~~~~~~k~~~~ 20 (241)
.|+..||+.|-.+|+.|
T Consensus 60 rDltkrINELKnqLEdl 76 (562)
T 3ghg_A 60 QDFTNRINKLKNSLFEY 76 (562)
T ss_dssp HHHHHHHHHHHHHHTHH
T ss_pred CcHHHHHHHHHHHHHHH
Confidence 48899999999999776
No 29
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=56.47 E-value=31 Score=20.97 Aligned_cols=41 Identities=34% Similarity=0.416 Sum_probs=27.0
Q ss_pred HHHHhhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhh
Q 026244 78 ARLLEEVPKLQRLAIKKVKGLSTEELVARNDLVLALPDRIQAIPDGT 124 (241)
Q Consensus 78 ~~L~e~l~~L~~~l~~~~~~l~~~E~~rR~~~v~~L~~~i~~l~~~~ 124 (241)
..|..+|+.| +..+++|+|+..-..-+..|..++..++..+
T Consensus 3 aalkselqal------kkegfspeelaaleselqalekklaalkskl 43 (48)
T 1g6u_A 3 AALKSELQAL------KKEGFSPEELAALESELQALEKKLAALKSKL 43 (48)
T ss_dssp HHHHHHHHHH------HHTTCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH------HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555544 2347889888887777777777777766543
No 30
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=48.44 E-value=23 Score=22.23 Aligned_cols=29 Identities=14% Similarity=0.311 Sum_probs=18.5
Q ss_pred HHHHhHHHhhhHHHHHHHHHHHHHHHhcc
Q 026244 210 EIDTKVDRATADLKNTNVRLKHTVTQVMT 238 (241)
Q Consensus 210 ~l~~~vD~~~~~L~~~~~r~~~~l~k~r~ 238 (241)
+++++|++..+.|....-|+.+++..+-|
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~s 30 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNA 30 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666665543
No 31
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=46.74 E-value=89 Score=24.52 Aligned_cols=89 Identities=8% Similarity=0.093 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhh----chhhHHHHHHHHHHHHHHHHhhHhHHHHHHHHHhcCCCH--HHHHHHHH
Q 026244 35 AFARLYGAVEADIEAALQKAESASNEK----NRASVVALNAEIRRTKARLLEEVPKLQRLAIKKVKGLST--EELVARND 108 (241)
Q Consensus 35 pF~~~~~d~~~~l~~~~~~~~~~~~~~----n~~~~~~~~~eir~~l~~L~e~l~~L~~~l~~~~~~l~~--~E~~rR~~ 108 (241)
.|.....++...|..+......+...- +.|. .....+++..+..+..++..+-+.+....+.|.. .+...|+.
T Consensus 6 ~f~~~~~~i~~~i~~i~~~v~~L~~l~~~~l~~~~-~~~~~~~~~~i~~l~~~i~~~~~~~~~~lk~l~~~~~~~r~~k~ 84 (196)
T 1fio_A 6 GFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVN-EEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDGIHDTNKQA 84 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHH
Confidence 588888888888777754443322111 1111 1112245555555544444443322111111100 12356777
Q ss_pred HHHHHHHHHHhhhhhh
Q 026244 109 LVLALPDRIQAIPDGT 124 (241)
Q Consensus 109 ~v~~L~~~i~~l~~~~ 124 (241)
.+..|..++..+...|
T Consensus 85 ~~~~L~~~f~~~~~~f 100 (196)
T 1fio_A 85 QAENSRQRFLKLIQDY 100 (196)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888877775554
No 32
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=41.70 E-value=3e+02 Score=28.08 Aligned_cols=30 Identities=20% Similarity=0.265 Sum_probs=18.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026244 177 DQGLDMISEGLDTLKNMAHDMNEEVDRQVP 206 (241)
Q Consensus 177 D~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~ 206 (241)
.+.+..|..-...|+++...+...+..+++
T Consensus 1022 ~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~ 1051 (1080)
T 2dfs_A 1022 EQLVSELKEQNTLLKTEKEELNRRIHDQAK 1051 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666666655555553
No 33
>1qoy_A Hemolysin E; toxin, membrane pore former, cytolysin, pores; 2.0A {Escherichia coli} SCOP: h.4.4.1 PDB: 2wcd_A
Probab=36.94 E-value=29 Score=30.54 Aligned_cols=61 Identities=13% Similarity=0.232 Sum_probs=46.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHHHHhcc
Q 026244 177 DQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQVMT 238 (241)
Q Consensus 177 D~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~k~r~ 238 (241)
|+.++.+-.+|..+..+...++.|+|.+-. +.+|..-+|..+.-|--=..+.++-|.++|+
T Consensus 22 ~~~~e~vk~al~Sls~iv~kY~~elD~kvk-f~~LQ~aId~ID~~MlgY~G~AK~~LD~lRs 82 (318)
T 1qoy_A 22 DKTVEVVKNAIETADGALDLYNKYLDQVIP-WQTFDETIKELSRFKQEYSQAASVLVGDIKT 82 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHSC-HHHHHHHHHHTTTTGGGSCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHhhhcCCcHHHHhhHHHHH
Confidence 567889999999999999999999998866 4667777777766665555566666666654
No 34
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=31.90 E-value=1.2e+02 Score=20.66 Aligned_cols=63 Identities=14% Similarity=0.292 Sum_probs=46.1
Q ss_pred HHHHHhhhhhHHHHHHHHHHH---HHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHH
Q 026244 170 EMRKMKQDQGLDMISEGLDTL---KNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHT 232 (241)
Q Consensus 170 qq~~~eQD~~Ld~l~~~v~~l---k~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~ 232 (241)
+++..+-|...+.+...-..+ ..-+....+||..-+.=+-.+.+++|++..+|..++.++..-
T Consensus 9 ~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeea 74 (81)
T 1ic2_A 9 QMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELA 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555554444444 446667789999999999999999999999999999988653
No 35
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=31.85 E-value=83 Score=21.69 Aligned_cols=29 Identities=10% Similarity=0.071 Sum_probs=15.1
Q ss_pred HHHHHHHHHhhhHHHHHHhHHHhhhHHHH
Q 026244 196 DMNEEVDRQVPLMDEIDTKVDRATADLKN 224 (241)
Q Consensus 196 ~ig~El~~Q~~lLd~l~~~vD~~~~~L~~ 224 (241)
.+|..|-.|...||.|...+.....||..
T Consensus 32 eLn~~v~~Qq~~Id~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 32 ELSEALADARLTGARNAELIRHLLEDLGK 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555566666666665555555544
No 36
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=31.77 E-value=1.1e+02 Score=20.28 Aligned_cols=46 Identities=9% Similarity=0.158 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHHHHhc
Q 026244 192 NMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQVM 237 (241)
Q Consensus 192 ~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~k~r 237 (241)
.++..+.+-+..=...++.+..........+.....+|..++..+.
T Consensus 66 ~~shel~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 111 (115)
T 3zrx_A 66 GVSHDLRTPLTRIRLATEMMSEQDGYLAESINKDIEECNAIIEQFI 111 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334444444444555556666666666666553
No 37
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=31.08 E-value=38 Score=23.38 Aligned_cols=26 Identities=15% Similarity=0.328 Sum_probs=11.5
Q ss_pred HHHhHHHhhhHHHHHHHHHHHHHHHh
Q 026244 211 IDTKVDRATADLKNTNVRLKHTVTQV 236 (241)
Q Consensus 211 l~~~vD~~~~~L~~~~~r~~~~l~k~ 236 (241)
++++|.+..+.|....-|+.+++..+
T Consensus 5 lEEKv~~LE~sld~LQTrfARLLaEy 30 (74)
T 3swf_A 5 LEEKVTRMESSVDLLQTRFARILAEY 30 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433
No 38
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=30.68 E-value=1.3e+02 Score=20.64 Aligned_cols=24 Identities=33% Similarity=0.310 Sum_probs=14.4
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHH
Q 026244 170 EMRKMKQDQGLDMISEGLDTLKNM 193 (241)
Q Consensus 170 qq~~~eQD~~Ld~l~~~v~~lk~~ 193 (241)
+..+.=|+..++.|+.+|.++...
T Consensus 20 E~klAfqE~tIeeLn~~v~~Qq~~ 43 (78)
T 3efg_A 20 ETRLSFQEQALTELSEALADARLT 43 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666665443
No 39
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=29.91 E-value=2e+02 Score=22.49 Aligned_cols=58 Identities=9% Similarity=0.107 Sum_probs=48.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHHH
Q 026244 177 DQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVT 234 (241)
Q Consensus 177 D~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~ 234 (241)
...+..|...+..+..--.....||...+..++.+.+.+...+-.+..+..+++++-.
T Consensus 67 ~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~ 124 (152)
T 3a7p_A 67 LNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKK 124 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4477788888888888888889999999999999999999888888888877776644
No 40
>3kz5_E Protein SOPB; partition, segregation, F plasmid, DNA-binding protein, DNA- DNA binding protein; 1.58A {Escherichia coli}
Probab=29.55 E-value=29 Score=22.23 Aligned_cols=16 Identities=19% Similarity=0.493 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhhhhhc
Q 026244 5 DILTRVDSICKKYDKY 20 (241)
Q Consensus 5 d~~~r~~~~~~k~~~~ 20 (241)
++|.++++|+++|.|-
T Consensus 35 ~~IeKIE~lL~e~~k~ 50 (52)
T 3kz5_E 35 ECIEKIEAILKELEKP 50 (52)
T ss_dssp HHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhhc
Confidence 7899999999999874
No 41
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=29.24 E-value=7.3e+02 Score=28.81 Aligned_cols=51 Identities=12% Similarity=0.191 Sum_probs=27.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHH
Q 026244 175 KQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHT 232 (241)
Q Consensus 175 eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~ 232 (241)
+-.+.|..|...|..|+. +.+.-..=-..|...++.+..||..|.+-+..+
T Consensus 2032 ~~~~~L~~le~~l~~L~~-------~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL 2082 (3245)
T 3vkg_A 2032 EIVATITALEKSIATYKE-------EYATLIRETEQIKTESSKVKNKVDRSIALLDNL 2082 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444444444444443 333333334556666777777777776655544
No 42
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=26.30 E-value=2e+02 Score=21.31 Aligned_cols=60 Identities=17% Similarity=0.259 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHhhHhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 026244 66 VVALNAEIRRTKARLLEEVPKLQRLAIKKV---KGLSTEELVARNDLVLALPDRIQAIPDGTA 125 (241)
Q Consensus 66 ~~~~~~eir~~l~~L~e~l~~L~~~l~~~~---~~l~~~E~~rR~~~v~~L~~~i~~l~~~~~ 125 (241)
+..+..+|...=.+|..--.+|+..-.... -.++..-+.+|+..|..|+.++.+++..+.
T Consensus 24 ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevNK~tl~~R~~~Vs~lq~KiaeLKrqLA 86 (113)
T 4fi5_A 24 MEELQREINAHEGQLVIARQKVRDAEKQYEKDPDELNKRTLTDREGVAVSIQAKIDELKRQLA 86 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555554421111 113444578999999999999999987764
No 43
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=24.66 E-value=3.2e+02 Score=23.43 Aligned_cols=33 Identities=9% Similarity=0.124 Sum_probs=25.5
Q ss_pred HhhhHHHHHHhHHHhhhHHHHHHHHHHHHHHHh
Q 026244 204 QVPLMDEIDTKVDRATADLKNTNVRLKHTVTQV 236 (241)
Q Consensus 204 Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~k~ 236 (241)
=+.|..+|...+..+..|+.....|+.++-.++
T Consensus 48 A~dIF~eL~~e~~~~~~R~~~L~~RI~~L~~~v 80 (279)
T 3p8c_D 48 AEDIFGELFNEAHSFSFRVNSLQERVDRLSVSV 80 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345677777788888888888888888887766
No 44
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=23.97 E-value=1.5e+02 Score=18.93 Aligned_cols=17 Identities=24% Similarity=0.265 Sum_probs=7.7
Q ss_pred hHHHhhhHHHHHHHHHH
Q 026244 214 KVDRATADLKNTNVRLK 230 (241)
Q Consensus 214 ~vD~~~~~L~~~~~r~~ 230 (241)
+|..+...-.++|.||.
T Consensus 33 ~v~~ak~eA~RAN~RlD 49 (52)
T 1jcd_A 33 DAQAAKDDAARANQRAD 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 33344444444555443
No 45
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=23.72 E-value=1.3e+02 Score=22.78 Aligned_cols=38 Identities=11% Similarity=0.151 Sum_probs=33.5
Q ss_pred HHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHHHHhcc
Q 026244 201 VDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQVMT 238 (241)
Q Consensus 201 l~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~k~r~ 238 (241)
=++|...|..|......+...+..+-++..+++++++.
T Consensus 87 ee~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~ 124 (132)
T 1ykh_B 87 AEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDS 124 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788999999999999999999999999999988854
No 46
>2np0_B Synaptotagmin-2; botulinum, neurotoxin, synaptotagamin, receptor, hydrolase; 2.62A {Mus musculus}
Probab=22.98 E-value=81 Score=17.03 Aligned_cols=20 Identities=30% Similarity=0.388 Sum_probs=15.2
Q ss_pred CCCChHHHHHHHHHHHHHHH
Q 026244 31 SGDDAFARLYGAVEADIEAA 50 (241)
Q Consensus 31 ~~~DpF~~~~~d~~~~l~~~ 50 (241)
+.+|+|..+.++...+|+.+
T Consensus 3 ~~~d~~~~~k~kf~nel~ki 22 (26)
T 2np0_B 3 SQEDMFAKLKEKFFNEINKX 22 (26)
T ss_pred CcchHHHHHHHHHHHHHHhh
Confidence 45799999888887777543
No 47
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=22.00 E-value=1.4e+02 Score=23.20 Aligned_cols=38 Identities=11% Similarity=0.153 Sum_probs=32.9
Q ss_pred HHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHHHHhcc
Q 026244 201 VDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQVMT 238 (241)
Q Consensus 201 l~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~k~r~ 238 (241)
=++|...|..|+.....+...+..+-++..+++++++.
T Consensus 87 eeeQ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~ 124 (151)
T 1yke_B 87 AEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDS 124 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788899999999999999999999999999888754
No 48
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=20.99 E-value=4.4e+02 Score=23.43 Aligned_cols=63 Identities=21% Similarity=0.185 Sum_probs=42.4
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHHH
Q 026244 172 RKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVT 234 (241)
Q Consensus 172 ~~~eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~ 234 (241)
+.++.....+..-.-+.........+-+|=+.+.+.|++++..+..+..+++.+..+-..+-.
T Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (487)
T 3oja_A 422 MYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVREQNLAS 484 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHHHHHHH
Confidence 333333333344444445555555566677788889999999999999999988887665544
No 49
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=20.46 E-value=1.1e+02 Score=16.33 Aligned_cols=19 Identities=16% Similarity=0.337 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHHHhcc
Q 026244 220 ADLKNTNVRLKHTVTQVMT 238 (241)
Q Consensus 220 ~~L~~~~~r~~~~l~k~r~ 238 (241)
..|.....|+.++-++.||
T Consensus 8 keledlqerlrklrkklrs 26 (27)
T 3twe_A 8 KELEDLQERLRKLRKKLRS 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 3444555666666666665
Done!