BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026246
         (241 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3IZ3|B Chain B, Cryoem Structure Of Cytoplasmic Polyhedrosis Virus
 pdb|3IZ3|C Chain C, Cryoem Structure Of Cytoplasmic Polyhedrosis Virus
 pdb|3J17|B Chain B, Structure Of A Transcribing Cypovirus By Cryo-Electron
           Microscopy
 pdb|3J17|C Chain C, Structure Of A Transcribing Cypovirus By Cryo-Electron
           Microscopy
          Length = 1333

 Score = 32.3 bits (72), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 4/88 (4%)

Query: 131 VFSAAEAVEEFI-GIIMNI-KMEFDDEIGLSGENVKPLSNELSSAIRTVYQRYATYLDAF 188
           V + AE   E++ G++M + K+  D+ + + GE   P+SN LS+ +  V +   TY +  
Sbjct: 237 VTAGAEQSAEYVSGLLMVLFKVMTDNRLVIVGETTTPMSNTLSTVVNNVLR--TTYHNNV 294

Query: 189 GPDESYLRKKVETELGSKMIFLKMRCAG 216
           G + + LR   +    ++ I   ++ AG
Sbjct: 295 GVNPALLRDFTQVNWLNRDITNMLQQAG 322


>pdb|3CNF|A Chain A, 3.88 Angstrom Structure Of Cytoplasmic Polyhedrosis Virus
           By Cryo-Electron Microscopy
 pdb|3CNF|B Chain B, 3.88 Angstrom Structure Of Cytoplasmic Polyhedrosis Virus
           By Cryo-Electron Microscopy
 pdb|3IZX|B Chain B, 3.1 Angstrom Cryoem Structure Of Cytoplasmic Polyhedrosis
           Virus
 pdb|3IZX|C Chain C, 3.1 Angstrom Cryoem Structure Of Cytoplasmic Polyhedrosis
           Virus
          Length = 1333

 Score = 31.6 bits (70), Expect = 0.39,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 4/68 (5%)

Query: 131 VFSAAEAVEEFI-GIIMNI-KMEFDDEIGLSGENVKPLSNELSSAIRTVYQRYATYLDAF 188
           V + AE   E++ G++M + K+  D+ + + GE   P+SN LS+ +  V +   TY +  
Sbjct: 237 VTAGAEQSAEYVSGLLMVLFKVMTDNRLVIVGETTTPMSNTLSTVVNNVLR--TTYHNNV 294

Query: 189 GPDESYLR 196
           G + + LR
Sbjct: 295 GVNPALLR 302


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.131    0.370 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,569,029
Number of Sequences: 62578
Number of extensions: 202766
Number of successful extensions: 589
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 589
Number of HSP's gapped (non-prelim): 6
length of query: 241
length of database: 14,973,337
effective HSP length: 96
effective length of query: 145
effective length of database: 8,965,849
effective search space: 1300048105
effective search space used: 1300048105
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)