BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026246
         (241 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9SX77|UMP6_ARATH Uncharacterized protein At1g47420, mitochondrial OS=Arabidopsis
           thaliana GN=At1g47420 PE=1 SV=1
          Length = 257

 Score =  283 bits (725), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 139/228 (60%), Positives = 172/228 (75%), Gaps = 14/228 (6%)

Query: 27  NNHHL-RHLSSSRSLFSLSSPAAS------------IPSKSIPFDCRSSLVMSIGCNRSF 73
            +HH+ +HLS  R+L +++ P AS            I   S+  D +    M +G  R F
Sbjct: 31  GSHHIEKHLSRHRTLITVA-PNASVIGDVQINKGSFISYASVSRDLQYPRAMGMGQVRRF 89

Query: 74  SEDVAHMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFS 133
           SEDV+HMP + D ++  AFKDLMAADW ELP++V+ DAK+A+S+N DDKAGQE LKNVF 
Sbjct: 90  SEDVSHMPEMEDSDVLNAFKDLMAADWAELPSAVVKDAKTAISKNTDDKAGQEALKNVFR 149

Query: 134 AAEAVEEFIGIIMNIKMEFDDEIGLSGENVKPLSNELSSAIRTVYQRYATYLDAFGPDES 193
           AAEAVEEF GI+ +IKME DD IG+SGE VKPL N+++ A+RT YQRYA YLD+F P+E 
Sbjct: 150 AAEAVEEFGGILTSIKMEIDDSIGMSGEGVKPLPNDITDALRTAYQRYAEYLDSFEPEEV 209

Query: 194 YLRKKVETELGSKMIFLKMRCAGLGSEWGKVTVLGTSGLAGSYVEQRA 241
           YL+KKVE ELG+KMI LKMRC+GLGSEWGKVTVLGTSGL+GSYVEQRA
Sbjct: 210 YLKKKVEMELGTKMIHLKMRCSGLGSEWGKVTVLGTSGLSGSYVEQRA 257


>sp|Q8WN96|ITPR2_BOVIN Inositol 1,4,5-trisphosphate receptor type 2 OS=Bos taurus GN=ITPR2
           PE=2 SV=1
          Length = 2701

 Score = 35.4 bits (80), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 19/105 (18%)

Query: 53  KSIPFDCRSSLVMSIGCNRSFSEDVAHMPVIRDPEIQRAFKDLMAADWGELPASV-IHDA 111
           +S+PFD R+S          F   + HM V RDP+ +       A  W E+P  + IH+ 
Sbjct: 768 ESLPFDLRAS----------FCRLMLHMHVDRDPQ-ESVVPVRYARLWTEIPTKITIHEY 816

Query: 112 KSALSRNNDDKAGQEVLKNVFS-AAEAVEEFIGIIMNIKMEFDDE 155
            S    + +D      +K  F+   E VEE++  ++N    F D+
Sbjct: 817 DSITDSSRND------MKRKFALTMEFVEEYLKEVVNQPFPFGDK 855


>sp|Q8WSR4|ITPR_ASTPE Inositol 1,4,5-trisphosphate receptor OS=Asterina pectinifera
           GN=IP3R PE=1 SV=1
          Length = 2698

 Score = 34.7 bits (78), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 17/106 (16%)

Query: 53  KSIPFDCRSSLVMSIGCNRSFSEDVAHMPVIRDPEIQRAFKDLMAADWGELPASV-IHDA 111
           +S+P+D R+S          F+  + HM V RDP+ ++      A  W E+P  + I D 
Sbjct: 756 ESLPYDLRAS----------FTRLMLHMHVDRDPK-EQVTPVKYAELWSEIPTQITIDDY 804

Query: 112 KSALSRNNDDKAGQEVLKNVFS-AAEAVEEFI-GIIMNIKMEFDDE 155
             A   NN   AG+E  +  FS   + VEE++  ++  + + +D E
Sbjct: 805 DGA---NNLTHAGKEDAQPKFSLTIKFVEEYLCNVVSGVLVVYDKE 847


>sp|Q0V8C2|EXOC3_BOVIN Exocyst complex component 3 OS=Bos taurus GN=EXOC3 PE=2 SV=1
          Length = 745

 Score = 31.6 bits (70), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 3/61 (4%)

Query: 87  EIQRAFKDLMAADWGELPASV--IHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGI 144
           +IQ++  D+ + DW +   ++  + D K A+ R++   A  E LKN+FS  E V E   +
Sbjct: 74  DIQQSLADV-SKDWRQSINTIESLKDVKDAVVRHSQLAAAVENLKNIFSVPEIVRETQDL 132

Query: 145 I 145
           I
Sbjct: 133 I 133


>sp|Q6TS43|CAPSD_CPVBM Capsid protein VP1 OS=Bombyx mori cytoplasmic polyhedrosis virus
           PE=1 SV=1
          Length = 1333

 Score = 31.6 bits (70), Expect = 5.5,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 4/68 (5%)

Query: 131 VFSAAEAVEEFI-GIIMNI-KMEFDDEIGLSGENVKPLSNELSSAIRTVYQRYATYLDAF 188
           V + AE   E++ G++M + K+  D+ + + GE   P+SN LS+ +  V +   TY +  
Sbjct: 237 VTAGAEQSAEYVSGLLMVLFKVMTDNRLVIVGETTTPMSNTLSTVVNNVLR--TTYHNNV 294

Query: 189 GPDESYLR 196
           G + + LR
Sbjct: 295 GVNPALLR 302


>sp|Q985W3|ISPH_RHILO 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Rhizobium
           loti (strain MAFF303099) GN=ispH PE=3 SV=1
          Length = 336

 Score = 31.2 bits (69), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 31/136 (22%), Positives = 53/136 (38%), Gaps = 4/136 (2%)

Query: 101 GELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIMNIKMEFDDEIGLSG 160
           G+LP   +   ++         A  + L  V     +VE+  GII  ++  F D    + 
Sbjct: 144 GQLPEGAVTLVETEADAARLVPADPKALGFVTQTTLSVEDTAGIIRALRERFPDLQAPAA 203

Query: 161 ENVKPLSNELSSAIRTVYQRYATYLDAFGPDESYLRKKVET--ELGSKMIFLKMRCAGLG 218
           E++   +     A++        YL    P+ S  R+ VE     G+ M  L  R A + 
Sbjct: 204 ESICYATTNRQEAVKDTAPGADLYLIVGAPNSSNSRRLVEVAERAGATMSLLVQRAAEI- 262

Query: 219 SEWGKVTVLGTSGLAG 234
             W  +  + T GL+ 
Sbjct: 263 -PWNDIGTISTLGLSA 277


>sp|Q01969|OMPA_THEMA Outer membrane protein alpha OS=Thermotoga maritima (strain ATCC
           43589 / MSB8 / DSM 3109 / JCM 10099) GN=omp-alpha PE=1
           SV=2
          Length = 400

 Score = 30.8 bits (68), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 1/72 (1%)

Query: 136 EAVEEFIGIIMNIKMEFDDEIGLSGENVKPLSNELSSAIRTVYQRYATYLDAFGPDESYL 195
           E +E+   +   I+MEFD EI L+ E V  +  +L +  R  Y+RY   +DA   + +  
Sbjct: 131 ELLEKIDAVKEEIEMEFDKEISLNREVVNNIGLKLGNLSRD-YERYKENVDAKISEVNEK 189

Query: 196 RKKVETELGSKM 207
              +E +LG+K+
Sbjct: 190 LAALEKDLGNKI 201


>sp|Q8CYC9|PFBA_STRR6 Plasmin and fibronectin-binding protein A OS=Streptococcus
           pneumoniae (strain ATCC BAA-255 / R6) GN=pfbA PE=1 SV=1
          Length = 719

 Score = 30.8 bits (68), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 12/91 (13%)

Query: 26  ANNHHLRHLSSSRSLFSLSSPAASIPSKSIPFDCRS--SLVMSIGCNRSFSEDVAHMPVI 83
           A+N     L +S S+ S+SS   +I S S   D R+  S V S   N+S+ ED     VI
Sbjct: 86  ASNSTTNGLDNSLSVNSISS-NGTIRSNS-QLDNRTVESTVTSTNENKSYKED-----VI 138

Query: 84  RDPEIQRAFKD--LMAADWGELPASVIHDAK 112
            D  I++ F+D  L   D+G +    IHD +
Sbjct: 139 SDRIIKKEFEDTALSVKDYGAV-GDGIHDDR 168


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.130    0.366 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,258,210
Number of Sequences: 539616
Number of extensions: 3088409
Number of successful extensions: 9274
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 9272
Number of HSP's gapped (non-prelim): 21
length of query: 241
length of database: 191,569,459
effective HSP length: 114
effective length of query: 127
effective length of database: 130,053,235
effective search space: 16516760845
effective search space used: 16516760845
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)