Your job contains 1 sequence.
>026247
MELKPQVECIPQQEKQQLLENIPQQEREGQLEDIPQQEKQPQQQQQETFHVLAVDDSLID
RKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTD
YCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEK
LQPRLLKSPNRSCGNNEDSDNDNKNETSNYKSSTNSAFSKRKALSAEAPERRPKMKEVAV
V
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 026247
(241 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|Q4GZK7 - symbol:rr4 "Type A response regulator ... 472 7.1e-45 1
UNIPROTKB|Q4GZK2 - symbol:rr9 "Type A response regulator ... 469 1.5e-44 1
TAIR|locus:2080590 - symbol:ARR9 "response regulator 9" s... 454 5.7e-43 1
TAIR|locus:2040282 - symbol:RR3 "response regulator 3" sp... 444 6.6e-42 1
TAIR|locus:2097870 - symbol:RR5 "response regulator 5" sp... 403 1.5e-37 1
TAIR|locus:2194584 - symbol:ARR4 "response regulator 4" s... 384 1.5e-35 1
TAIR|locus:2170723 - symbol:ARR6 "response regulator 6" s... 382 2.4e-35 1
TAIR|locus:2011286 - symbol:ARR7 "response regulator 7" s... 378 6.5e-35 1
TAIR|locus:2025911 - symbol:ARR3 "response regulator 3" s... 378 6.5e-35 1
UNIPROTKB|Q4GZK5 - symbol:rr6 "Type A response regulator ... 259 3.0e-33 2
TAIR|locus:2102509 - symbol:RR17 "response regulator 17" ... 362 3.2e-33 1
UNIPROTKB|Q4GZK8 - symbol:rr3 "Type A response regulator ... 243 3.8e-33 2
TAIR|locus:2027237 - symbol:ARR15 "response regulator 15"... 359 6.7e-33 1
UNIPROTKB|Q4GZK4 - symbol:rr7 "Type A response regulator ... 253 8.6e-30 2
UNIPROTKB|Q4GZK9 - symbol:rr2 "Type A response regulator ... 294 5.2e-26 1
UNIPROTKB|Q4GZL0 - symbol:rr1 "Type A response regulator ... 272 1.1e-23 1
UNIPROTKB|Q4GZK3 - symbol:rr8 "Type A response regulator ... 190 5.2e-21 2
TAIR|locus:2054895 - symbol:AT2G07440 species:3702 "Arabi... 159 1.0e-11 1
UNIPROTKB|Q0C4H5 - symbol:cheY "Chemotaxis protein CheY" ... 115 2.1e-11 2
UNIPROTKB|Q9KKK8 - symbol:VC_A1096 "Chemotaxis protein Ch... 107 7.5e-11 2
TIGR_CMR|VC_A1096 - symbol:VC_A1096 "chemotaxis protein C... 107 7.5e-11 2
UNIPROTKB|Q9WYT9 - symbol:TM_0468 "Response regulator" sp... 101 1.2e-10 2
UNIPROTKB|Q4KG39 - symbol:cheY "Chemotaxis protein CheY" ... 104 2.8e-10 2
TIGR_CMR|CPS_1520 - symbol:CPS_1520 "chemotaxis protein C... 105 4.3e-10 2
TIGR_CMR|GSU_1117 - symbol:GSU_1117 "response regulator" ... 99 2.2e-09 2
UNIPROTKB|Q9KQD5 - symbol:VC_2065 "Chemotaxis protein Che... 103 3.1e-09 2
TIGR_CMR|VC_2065 - symbol:VC_2065 "chemotaxis protein Che... 103 3.1e-09 2
DICTYBASE|DDB_G0284331 - symbol:regA "response regulator ... 111 1.9e-08 2
UNIPROTKB|Q3ADB1 - symbol:cheY1 "Chemotaxis protein CheY"... 90 5.1e-08 2
TIGR_CMR|CHY_1026 - symbol:CHY_1026 "chemotaxis protein C... 90 5.1e-08 2
TIGR_CMR|CJE_1261 - symbol:CJE_1261 "chemotaxis protein C... 125 5.4e-08 1
TAIR|locus:2065398 - symbol:RR14 "response regulator 14" ... 125 6.1e-08 2
TAIR|locus:2044376 - symbol:PRR9 "pseudo-response regulat... 128 7.5e-08 2
TAIR|locus:2008585 - symbol:ARR11 "response regulator 11"... 120 1.1e-07 2
TAIR|locus:2130095 - symbol:RR2 "response regulator 2" sp... 123 1.3e-07 3
UNIPROTKB|Q74DM7 - symbol:cheY34H-1 "Response receiver Ch... 93 1.5e-07 2
TIGR_CMR|GSU_1289 - symbol:GSU_1289 "chemotaxis protein C... 93 1.5e-07 2
UNIPROTKB|Q48ND2 - symbol:cheY1 "Chemotaxis protein CheY"... 93 1.9e-07 2
TIGR_CMR|CJE_1664 - symbol:CJE_1664 "DNA-binding response... 122 3.5e-07 2
TIGR_CMR|GSU_0403 - symbol:GSU_0403 "chemotaxis protein C... 87 7.0e-07 2
TIGR_CMR|GSU_2287 - symbol:GSU_2287 "response regulator" ... 96 9.5e-07 2
TIGR_CMR|SPO_0022 - symbol:SPO_0022 "response regulator" ... 103 1.1e-06 2
UNIPROTKB|P71403 - symbol:cheY "Chemotaxis protein CheY h... 113 1.4e-06 1
TAIR|locus:2093668 - symbol:RR1 "response regulator 1" sp... 116 1.5e-06 2
TIGR_CMR|GSU_1671 - symbol:GSU_1671 "response regulator/G... 99 1.6e-06 2
TIGR_CMR|GSU_2219 - symbol:GSU_2219 "response regulator" ... 89 1.7e-06 2
TAIR|locus:2151206 - symbol:PRR7 "pseudo-response regulat... 135 1.8e-06 1
UNIPROTKB|P0A5Z4 - symbol:mtrA "DNA-binding response regu... 117 2.0e-06 2
TIGR_CMR|GSU_2535 - symbol:GSU_2535 "response regulator" ... 110 3.1e-06 1
UNIPROTKB|Q8EEQ6 - symbol:cheY "Chemotaxis signal transdu... 86 3.4e-06 2
TIGR_CMR|SO_2318 - symbol:SO_2318 "chemotaxis protein Che... 86 3.4e-06 2
TIGR_CMR|SO_3209 - symbol:SO_3209 "chemotaxis protein Che... 109 4.0e-06 1
TIGR_CMR|GSU_1285 - symbol:GSU_1285 "sensory box sensor h... 103 5.8e-06 2
UNIPROTKB|Q0BZW4 - symbol:pleD "Response regulator PleD" ... 109 6.0e-06 2
TAIR|locus:2040194 - symbol:RR12 "response regulator 12" ... 129 7.6e-06 1
UNIPROTKB|Q8EF67 - symbol:cheY "Chemotaxis signal transdu... 76 8.6e-06 2
TIGR_CMR|SO_2120 - symbol:SO_2120 "chemotaxis protein Che... 76 8.6e-06 2
UNIPROTKB|Q48GG3 - symbol:cheY2 "Chemotaxis protein CheY"... 105 1.2e-05 1
TAIR|locus:2116587 - symbol:RR10 "response regulator 10" ... 126 1.6e-05 1
TIGR_CMR|GSU_1879 - symbol:GSU_1879 "DNA-binding response... 92 1.7e-05 2
TIGR_CMR|SPO_1953 - symbol:SPO_1953 "phosphate regulon tr... 101 1.7e-05 2
TIGR_CMR|GSU_1038 - symbol:GSU_1038 "sensory box histidin... 89 1.9e-05 2
TIGR_CMR|DET_1540 - symbol:DET_1540 "DNA-binding response... 118 2.4e-05 1
TIGR_CMR|GSU_2574 - symbol:GSU_2574 "response regulator" ... 120 4.4e-05 1
TIGR_CMR|APH_0551 - symbol:APH_0551 "response regulator/G... 111 4.5e-05 2
UNIPROTKB|Q9KRN4 - symbol:VC1602 "Chemotaxis protein CheV... 119 4.6e-05 1
TIGR_CMR|VC_1602 - symbol:VC_1602 "chemotaxis protein Che... 119 4.6e-05 1
TIGR_CMR|DET_0135 - symbol:DET_0135 "DNA-binding response... 96 5.8e-05 2
UNIPROTKB|Q9KS16 - symbol:VC_1445 "Sensor histidine kinas... 95 6.5e-05 2
TIGR_CMR|VC_1445 - symbol:VC_1445 "sensor histidine kinas... 95 6.5e-05 2
TIGR_CMR|GSU_2946 - symbol:GSU_2946 "DNA-binding heavy me... 114 7.3e-05 1
UNIPROTKB|Q74AX6 - symbol:cheY40H-1 "Response receiver Ch... 98 7.3e-05 1
TIGR_CMR|GSU_2223 - symbol:GSU_2223 "chemotaxis protein C... 98 7.3e-05 1
UNIPROTKB|Q1D8M8 - symbol:phoP2 "DNA-binding response reg... 114 8.9e-05 1
TIGR_CMR|BA_0996 - symbol:BA_0996 "sensor histidine kinas... 122 9.0e-05 1
TIGR_CMR|BA_0994 - symbol:BA_0994 "response regulator" sp... 117 0.00011 1
ASPGD|ASPL0000016988 - symbol:srrC species:162425 "Emeric... 108 0.00013 1
TIGR_CMR|GSU_1316 - symbol:GSU_1316 "response regulator" ... 115 0.00014 1
TIGR_CMR|GSU_2484 - symbol:GSU_2484 "DNA-binding response... 101 0.00016 2
TIGR_CMR|GSU_2693 - symbol:GSU_2693 "response regulator" ... 95 0.00016 1
UNIPROTKB|P06628 - symbol:spo0F "Sporulation initiation p... 86 0.00017 2
TIGR_CMR|SPO_0132 - symbol:SPO_0132 "sensor histidine kin... 84 0.00017 2
UNIPROTKB|Q7D1A8 - symbol:cheY "Chemotaxis receiver prote... 82 0.00019 2
NCBI_NP|NP_353545.1 - symbol:cheY "chemotaxisreceiverprot... 82 0.00019 2
TIGR_CMR|DET_0170 - symbol:DET_0170 "DNA-binding response... 111 0.00019 1
UNIPROTKB|Q7Y0W3 - symbol:Q7Y0W3 "Two-component response ... 96 0.00019 2
UNIPROTKB|Q7Y0W5 - symbol:EHD1 "Two-component response re... 96 0.00019 2
TIGR_CMR|CHY_1125 - symbol:CHY_1125 "response regulator" ... 108 0.00030 1
UNIPROTKB|Q1DF43 - symbol:MXAN_0460 "Response regulator" ... 107 0.00031 2
TIGR_CMR|CPS_3950 - symbol:CPS_3950 "response regulator/G... 88 0.00033 2
UNIPROTKB|Q74CL9 - symbol:GSU1654 "Response receiver-modu... 105 0.00035 2
TIGR_CMR|GSU_1654 - symbol:GSU_1654 "response regulator, ... 105 0.00035 2
TIGR_CMR|DET_0232 - symbol:DET_0232 "DNA-binding response... 108 0.00042 1
TIGR_CMR|SO_1558 - symbol:SO_1558 "phosphate regulon resp... 98 0.00043 2
TIGR_CMR|CPS_1619 - symbol:CPS_1619 "DNA-binding response... 105 0.00049 1
TIGR_CMR|NSE_0512 - symbol:NSE_0512 "response regulator/G... 93 0.00050 2
UNIPROTKB|Q11156 - symbol:regX3 "Sensory transduction pro... 98 0.00052 2
TIGR_CMR|BA_3067 - symbol:BA_3067 "DNA-binding response r... 83 0.00054 2
TIGR_CMR|BA_1660 - symbol:BA_1660 "chemotaxis response re... 77 0.00058 2
UNIPROTKB|Q4K714 - symbol:PFL_4888 "Sigma-54 dependent DN... 109 0.00070 2
WARNING: Descriptions of 3 database sequences were not reported due to the
limiting value of parameter V = 100.
>UNIPROTKB|Q4GZK7 [details] [associations]
symbol:rr4 "Type A response regulator 4" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0009735 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 HOGENOM:HOG000034820 EMBL:CM000126
EMBL:AJ938073 Uniprot:Q4GZK7
Length = 232
Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
Identities = 96/140 (68%), Positives = 117/140 (83%)
Query: 49 FHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTK 108
FHVLAVDDSLIDRK++E LL+ SSYQVT VDSG KALE LGL D ++S++SPS+ S
Sbjct: 10 FHVLAVDDSLIDRKLIEMLLKNSSYQVTTVDSGSKALELLGLRDE-GDDSSSSPSSSSPD 68
Query: 109 KEESRVNLIMTDYCMPGMTGYDLLKRLK-VSSWKDVPVVVMSSENVPSRVTMCLEEGAEE 167
+E VNLI+TDYCMPGMTGYDLLKR+K SS KD+PVV+MSSENVP+R+ CLE+GAEE
Sbjct: 69 HQEIDVNLIITDYCMPGMTGYDLLKRVKGSSSLKDIPVVIMSSENVPARINRCLEDGAEE 128
Query: 168 FLLKPVRLSDLEKLQPRLLK 187
F LKPV+L+D++KL+ LLK
Sbjct: 129 FFLKPVKLADMKKLKSHLLK 148
>UNIPROTKB|Q4GZK2 [details] [associations]
symbol:rr9 "Type A response regulator 9" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0009735
GO:GO:0006355 GO:GO:0035556 GO:GO:0007623 GO:GO:0009736
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
EMBL:CM000136 EMBL:AJ938078 STRING:Q4GZK2 Uniprot:Q4GZK2
Length = 201
Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
Identities = 103/196 (52%), Positives = 133/196 (67%)
Query: 49 FHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTK 108
FHVLAVDDSL DRK++E LL+ SS+QVT VDSG KALE+LGL D+ + SP + +
Sbjct: 9 FHVLAVDDSLPDRKLIERLLKTSSFQVTTVDSGSKALEFLGLHDHED-----SPISTQSD 63
Query: 109 KEESRVNLIMTDYCMPGMTGYDLLKRLKVSSW-KDVPVVVMSSENVPSRVTMCLEEGAEE 167
++E VNLI+TDYCMPGMTGYDLLK++K SS+ +D+PVV+MSS+N+PSR+ CLEEGA+E
Sbjct: 64 QQEVAVNLIITDYCMPGMTGYDLLKKIKESSYLRDIPVVIMSSDNIPSRINRCLEEGADE 123
Query: 168 FLLKPVRLSDLEKLQPRLLKS-------PNRSCGXXXXXXXXXXXXXXXYKSSTNSAFSK 220
F LKPVRLSD+ KL+P +LKS ++ SST+S K
Sbjct: 124 FFLKPVRLSDMSKLKPHILKSRCKEHYQQEQNLQSNSESNNSSNPTSENSSSSTSSNSHK 183
Query: 221 RKALSAEA-PER-RPK 234
RKA+ E P RP+
Sbjct: 184 RKAVDEEILPHTIRPR 199
>TAIR|locus:2080590 [details] [associations]
symbol:ARR9 "response regulator 9" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;IPI] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0009736 "cytokinin mediated signaling pathway"
evidence=RCA;IMP;TAS] [GO:0007623 "circadian rhythm"
evidence=RCA;IMP] [GO:0009735 "response to cytokinin stimulus"
evidence=IEP] [GO:0009740 "gibberellic acid mediated signaling
pathway" evidence=RCA] [GO:0010162 "seed dormancy process"
evidence=RCA] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0005634 GO:GO:0009536 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006355 GO:GO:0007623 GO:GO:0006351
GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034820 KO:K14492 eggNOG:COG3706
ProtClustDB:CLSN2683767 EMBL:AB010918 EMBL:AL138655 EMBL:AY090234
EMBL:AY133571 IPI:IPI00543561 PIR:T47764 RefSeq:NP_191263.1
UniGene:At.245 ProteinModelPortal:O80366 SMR:O80366 IntAct:O80366
STRING:O80366 EnsemblPlants:AT3G57040.1 GeneID:824871
KEGG:ath:AT3G57040 GeneFarm:4126 TAIR:At3g57040 InParanoid:O80366
OMA:GISTDRA PhylomeDB:O80366 Genevestigator:O80366
GermOnline:AT3G57040 Uniprot:O80366
Length = 234
Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
Identities = 89/141 (63%), Positives = 113/141 (80%)
Query: 49 FHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTK 108
FHVLAVDDSL DRK++E LL+ SS QVT VDSG KALE+LGL + ++N + S
Sbjct: 9 FHVLAVDDSLFDRKLIERLLQKSSCQVTTVDSGSKALEFLGLRQSTDSNDPNAFSKAPVN 68
Query: 109 KEESRVNLIMTDYCMPGMTGYDLLKRLKVSS-WKDVPVVVMSSENVPSRVTMCLEEGAEE 167
+ VNLI+TDYCMPGMTGYDLLK++K SS ++D+PVV+MSSENVP+R++ CLEEGAEE
Sbjct: 69 HQVVEVNLIITDYCMPGMTGYDLLKKVKESSAFRDIPVVIMSSENVPARISRCLEEGAEE 128
Query: 168 FLLKPVRLSDLEKLQPRLLKS 188
F LKPVRL+DL KL+P ++K+
Sbjct: 129 FFLKPVRLADLNKLKPHMMKT 149
>TAIR|locus:2040282 [details] [associations]
symbol:RR3 "response regulator 3" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009736 "cytokinin mediated
signaling pathway" evidence=RCA;IMP;TAS] [GO:0007623 "circadian
rhythm" evidence=RCA;IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010029 "regulation of seed germination"
evidence=RCA] [GO:0031537 "regulation of anthocyanin metabolic
process" evidence=RCA] [GO:0048831 "regulation of shoot system
development" evidence=RCA] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0009536
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006355 GO:GO:0007623
GO:GO:0006351 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K14492 eggNOG:COG3706
EMBL:AB010917 EMBL:AC005662 EMBL:AY074643 IPI:IPI00535987
PIR:T48853 RefSeq:NP_181663.1 UniGene:At.244
ProteinModelPortal:O80365 SMR:O80365 IntAct:O80365 STRING:O80365
EnsemblPlants:AT2G41310.1 GeneID:818730 KEGG:ath:AT2G41310
GeneFarm:4125 TAIR:At2g41310 InParanoid:O80365 OMA:METESKF
PhylomeDB:O80365 ProtClustDB:CLSN2683767 Genevestigator:O80365
GermOnline:AT2G41310 Uniprot:O80365
Length = 225
Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
Identities = 90/142 (63%), Positives = 116/142 (81%)
Query: 49 FHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGL-IDNLENNSNASPSTLST 107
FHVLAVDDSL DRK++E LL+ SS QVT VDSG KALE+LGL +D +N+ NA ST
Sbjct: 9 FHVLAVDDSLFDRKMIERLLQKSSCQVTTVDSGSKALEFLGLRVD--DNDPNAL-STSPQ 65
Query: 108 KKEESRVNLIMTDYCMPGMTGYDLLKRLKVSS-WKDVPVVVMSSENVPSRVTMCLEEGAE 166
+E +NLI+TDYCMPGMTGYDLLK++K S+ ++ +PVV+MSSENVP+R++ CLEEGAE
Sbjct: 66 IHQEVEINLIITDYCMPGMTGYDLLKKVKESAAFRSIPVVIMSSENVPARISRCLEEGAE 125
Query: 167 EFLLKPVRLSDLEKLQPRLLKS 188
EF LKPV+L+DL KL+P ++K+
Sbjct: 126 EFFLKPVKLADLTKLKPHMMKT 147
>TAIR|locus:2097870 [details] [associations]
symbol:RR5 "response regulator 5" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS;IMP] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] [GO:0009736 "cytokinin mediated signaling
pathway" evidence=RCA;IMP;TAS] [GO:0010114 "response to red light"
evidence=IMP] [GO:0007623 "circadian rhythm" evidence=RCA;IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006612 "protein targeting to membrane"
evidence=RCA] [GO:0009963 "positive regulation of flavonoid
biosynthetic process" evidence=RCA] [GO:0010363 "regulation of
plant-type hypersensitive response" evidence=RCA]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0005739 GO:GO:0005634 GO:GO:0005737 GO:GO:0009536
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006355 GO:GO:0007623
GO:GO:0006351 GO:GO:0010114 GO:GO:0009736 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784 EMBL:AL049658
HOGENOM:HOG000034820 KO:K14492 EMBL:AB008488 EMBL:AB010916
EMBL:AF057281 EMBL:AY072390 EMBL:AY114698 IPI:IPI00516847
PIR:T06673 PIR:T50855 PIR:T50856 RefSeq:NP_190393.1
UniGene:At.24915 ProteinModelPortal:Q9SB04 SMR:Q9SB04 IntAct:Q9SB04
STRING:Q9SB04 EnsemblPlants:AT3G48100.1 GeneID:823965
KEGG:ath:AT3G48100 GeneFarm:4122 TAIR:At3g48100 InParanoid:Q9SB04
OMA:LEANDIY PhylomeDB:Q9SB04 ProtClustDB:CLSN2684027
Genevestigator:Q9SB04 GermOnline:AT3G48100 Uniprot:Q9SB04
Length = 184
Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
Identities = 84/144 (58%), Positives = 113/144 (78%)
Query: 50 HVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKK 109
HVLAVDDS++DRK +E LLRVSS +VT VDS +AL+YLGL D ENNS S
Sbjct: 26 HVLAVDDSMVDRKFIERLLRVSSCKVTVVDSATRALQYLGL-DG-ENNS-------SVGF 76
Query: 110 EESRVNLIMTDYCMPGMTGYDLLKRLKVSS-WKDVPVVVMSSENVPSRVTMCLEEGAEEF 168
E+ ++NLIMTDY MPGMTGY+LLK++K SS ++++PVV+MSSEN+ R+ CLEEGAE+F
Sbjct: 77 EDLKINLIMTDYSMPGMTGYELLKKIKESSAFREIPVVIMSSENILPRIDRCLEEGAEDF 136
Query: 169 LLKPVRLSDLEKLQPRLLKSPNRS 192
LLKPV+L+D+++L+ L+K+ R+
Sbjct: 137 LLKPVKLADVKRLRDSLMKAEERA 160
>TAIR|locus:2194584 [details] [associations]
symbol:ARR4 "response regulator 4" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS;TAS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0010017
"red or far-red light signaling pathway" evidence=IMP] [GO:0009736
"cytokinin mediated signaling pathway" evidence=RCA;IMP;TAS]
[GO:0010114 "response to red light" evidence=IMP] [GO:0009793
"embryo development ending in seed dormancy" evidence=IMP]
[GO:0007623 "circadian rhythm" evidence=RCA;IMP] [GO:0042752
"regulation of circadian rhythm" evidence=IGI] [GO:0009735
"response to cytokinin stimulus" evidence=IEP] [GO:0004674 "protein
serine/threonine kinase activity" evidence=IDA] [GO:0046777
"protein autophosphorylation" evidence=IDA] [GO:0006612 "protein
targeting to membrane" evidence=RCA] [GO:0009963 "positive
regulation of flavonoid biosynthetic process" evidence=RCA]
[GO:0010363 "regulation of plant-type hypersensitive response"
evidence=RCA] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0007623 GO:GO:0004674
GO:GO:0046777 GO:GO:0006351 GO:GO:0042752 GO:GO:0010114
GO:GO:0009793 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 EMBL:AC007067 GO:GO:0010017
HOGENOM:HOG000034820 KO:K14492 ProtClustDB:CLSN2912722
EMBL:AB008487 EMBL:AB010915 EMBL:AF057282 IPI:IPI00523637
PIR:T48851 RefSeq:NP_172517.1 UniGene:At.22981 UniGene:At.67259
ProteinModelPortal:O82798 SMR:O82798 IntAct:O82798 STRING:O82798
EnsemblPlants:AT1G10470.1 GeneID:837587 KEGG:ath:AT1G10470
GeneFarm:4121 TAIR:At1g10470 InParanoid:O82798 OMA:KRIRDYM
PhylomeDB:O82798 Genevestigator:O82798 GermOnline:AT1G10470
Uniprot:O82798
Length = 259
Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 50 HVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKK 109
HVLAVDDSL+DR ++E LLR++S +VT VDSG +ALE+LGL +N AS +
Sbjct: 35 HVLAVDDSLVDRIVIERLLRITSCKVTAVDSGWRALEFLGL-----DNEKAS-----AEF 84
Query: 110 EESRVNLIMTDYCMPGMTGYDLLKRLKVSS-WKDVPVVVMSSENVPSRVTMCLEEGAEEF 168
+ +V+LI+TDYCMPGMTGY+LLK++K SS +++VPVV+MSSENV +R+ CLEEGA++F
Sbjct: 85 DRLKVDLIITDYCMPGMTGYELLKKIKESSNFREVPVVIMSSENVLTRIDRCLEEGAQDF 144
Query: 169 LLKPVRLSDLEKLQPRLLKSPNRSCG 194
LLKPV+L+D+++L+ L K S G
Sbjct: 145 LLKPVKLADVKRLRSHLTKDVKLSNG 170
>TAIR|locus:2170723 [details] [associations]
symbol:ARR6 "response regulator 6" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS;TAS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;TAS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] [GO:0009736 "cytokinin mediated signaling
pathway" evidence=RCA;IMP;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0007623 "circadian rhythm" evidence=RCA]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0005739 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009536 GO:GO:0006355 GO:GO:0006351 GO:GO:0009736
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 KO:K14492 ProtClustDB:CLSN2684027
EMBL:AB008489 EMBL:AB008491 EMBL:AB009053 EMBL:BT004799
IPI:IPI00547780 PIR:T50857 PIR:T50860 RefSeq:NP_201097.1
UniGene:At.24207 ProteinModelPortal:Q9ZWS6 SMR:Q9ZWS6 IntAct:Q9ZWS6
STRING:Q9ZWS6 EnsemblPlants:AT5G62920.1 GeneID:836412
KEGG:ath:AT5G62920 GeneFarm:4123 TAIR:At5g62920 InParanoid:Q9ZWS6
OMA:DDSQEIK PhylomeDB:Q9ZWS6 Genevestigator:Q9ZWS6
GermOnline:AT5G62920 Uniprot:Q9ZWS6
Length = 186
Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
Identities = 82/139 (58%), Positives = 107/139 (76%)
Query: 50 HVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKK 109
HVLAVDDS +DRK +E LLRVSS +VT VDS +AL+YLGL ++E S
Sbjct: 26 HVLAVDDSHVDRKFIERLLRVSSCKVTVVDSATRALQYLGL--DVEEKSVGF-------- 75
Query: 110 EESRVNLIMTDYCMPGMTGYDLLKRLKVSS-WKDVPVVVMSSENVPSRVTMCLEEGAEEF 168
E+ +VNLIMTDY MPGMTGY+LLK++K SS +++VPVV+MSSEN+ R+ CLEEGAE+F
Sbjct: 76 EDLKVNLIMTDYSMPGMTGYELLKKIKESSAFREVPVVIMSSENILPRIDRCLEEGAEDF 135
Query: 169 LLKPVRLSDLEKLQPRLLK 187
LLKPV+LSD+++L+ L+K
Sbjct: 136 LLKPVKLSDVKRLRDSLMK 154
>TAIR|locus:2011286 [details] [associations]
symbol:ARR7 "response regulator 7" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;TAS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009736 "cytokinin mediated
signaling pathway" evidence=RCA;IMP;TAS] [GO:0019827 "stem cell
maintenance" evidence=IMP] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010200 "response to chitin" evidence=IEP] [GO:0007623
"circadian rhythm" evidence=RCA] [GO:0010029 "regulation of seed
germination" evidence=RCA] [GO:0031537 "regulation of anthocyanin
metabolic process" evidence=RCA] [GO:0048831 "regulation of shoot
system development" evidence=RCA] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0006355 GO:GO:0006351
GO:GO:0010200 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K14492
ProtClustDB:CLSN2914197 eggNOG:COG3706 EMBL:AB008490 EMBL:AC068602
IPI:IPI00536268 PIR:T50854 RefSeq:NP_173339.1 UniGene:At.238
ProteinModelPortal:Q9ZWS7 SMR:Q9ZWS7 IntAct:Q9ZWS7 STRING:Q9ZWS7
EnsemblPlants:AT1G19050.1 GeneID:838487 KEGG:ath:AT1G19050
GeneFarm:4124 TAIR:At1g19050 InParanoid:Q9ZWS7 OMA:LRISSCK
PhylomeDB:Q9ZWS7 Genevestigator:Q9ZWS7 GermOnline:AT1G19050
GO:GO:0019827 Uniprot:Q9ZWS7
Length = 206
Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
Identities = 76/145 (52%), Positives = 112/145 (77%)
Query: 50 HVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKK 109
HVLAVDDS++DRK++E LLR+SS +VT V+SG +AL+YLGL D + SN
Sbjct: 25 HVLAVDDSIVDRKVIERLLRISSCKVTTVESGTRALQYLGL-DGGKGASNL--------- 74
Query: 110 EESRVNLIMTDYCMPGMTGYDLLKRLKVSS-WKDVPVVVMSSENVPSRVTMCLEEGAEEF 168
++ +VNLI+TDY MPG++GYDLLK++K SS +++VPVV+MSSEN+ R+ CL+EGAEEF
Sbjct: 75 KDLKVNLIVTDYSMPGLSGYDLLKKIKESSAFREVPVVIMSSENILPRIQECLKEGAEEF 134
Query: 169 LLKPVRLSDLEKLQPRLLKSPNRSC 193
LLKPV+L+D+++++ ++++ C
Sbjct: 135 LLKPVKLADVKRIKQLIMRNEAEEC 159
>TAIR|locus:2025911 [details] [associations]
symbol:ARR3 "response regulator 3" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS;IDA] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;IDA;TAS] [GO:0006355 "regulation
of transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009736
"cytokinin mediated signaling pathway" evidence=TAS] [GO:0010114
"response to red light" evidence=IMP] [GO:0010161 "red light
signaling pathway" evidence=IMP] [GO:0007623 "circadian rhythm"
evidence=IMP] [GO:0042752 "regulation of circadian rhythm"
evidence=IGI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0007623 GO:GO:0006351 GO:GO:0042752 EMBL:AC007258
GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034820 KO:K14492 EMBL:AB008486 IPI:IPI00532280
PIR:T50853 RefSeq:NP_176202.1 UniGene:At.237
ProteinModelPortal:Q9ZWS9 SMR:Q9ZWS9 IntAct:Q9ZWS9 STRING:Q9ZWS9
EnsemblPlants:AT1G59940.1 GeneID:842288 KEGG:ath:AT1G59940
GeneFarm:4120 TAIR:At1g59940 eggNOG:COG3706 InParanoid:Q9ZWS9
OMA:RSEMIGI PhylomeDB:Q9ZWS9 ProtClustDB:CLSN2912722
Genevestigator:Q9ZWS9 GermOnline:AT1G59940 GO:GO:0010161
Uniprot:Q9ZWS9
Length = 231
Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
Identities = 78/139 (56%), Positives = 109/139 (78%)
Query: 50 HVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKK 109
HVLAVDDSL+DR ++E LLR++S +VT VDSG +ALE+LGL D+ + +
Sbjct: 34 HVLAVDDSLVDRIVIERLLRITSCKVTAVDSGWRALEFLGLDDD----------KAAVEF 83
Query: 110 EESRVNLIMTDYCMPGMTGYDLLKRLKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAEEF 168
+ +V+LI+TDYCMPGMTGY+LLK++K S S+K+VPVV+MSSENV +R+ CLEEGAE+F
Sbjct: 84 DRLKVDLIITDYCMPGMTGYELLKKIKESTSFKEVPVVIMSSENVMTRIDRCLEEGAEDF 143
Query: 169 LLKPVRLSDLEKLQPRLLK 187
LLKPV+L+D+++L+ L +
Sbjct: 144 LLKPVKLADVKRLRSYLTR 162
>UNIPROTKB|Q4GZK5 [details] [associations]
symbol:rr6 "Type A response regulator 6" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0005737
GO:GO:0009735 GO:GO:0006355 GO:GO:0035556 GO:GO:0007623
GO:GO:0010114 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
EMBL:AJ938075 ProteinModelPortal:Q4GZK5 KEGG:dosa:Os04t0673300-01
Gramene:Q4GZK5 Uniprot:Q4GZK5
Length = 170
Score = 259 (96.2 bits), Expect = 3.0e-33, Sum P(2) = 3.0e-33
Identities = 50/73 (68%), Positives = 64/73 (87%)
Query: 114 VNLIMTDYCMPGMTGYDLLKRLKVSSW-KDVPVVVMSSENVPSRVTMCLEEGAEEFLLKP 172
VN+I+TDY MPGMTGY+LLKR+K SS K++PVV+MSSENVP+R++ CLEEGAE+FLLKP
Sbjct: 97 VNMIITDYWMPGMTGYELLKRVKESSQLKEIPVVIMSSENVPNRISRCLEEGAEDFLLKP 156
Query: 173 VRLSDLEKLQPRL 185
VR SD+ +L R+
Sbjct: 157 VRPSDVSRLCSRI 169
Score = 119 (46.9 bits), Expect = 3.0e-33, Sum P(2) = 3.0e-33
Identities = 25/47 (53%), Positives = 34/47 (72%)
Query: 50 HVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYL--GLIDNL 94
HVLAVDDS +DR ++ +LR S Y+VT V+S +ALE L GL+ N+
Sbjct: 51 HVLAVDDSSVDRAVIAKILRSSKYRVTTVESATRALELLCLGLVPNV 97
>TAIR|locus:2102509 [details] [associations]
symbol:RR17 "response regulator 17" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009736 "cytokinin mediated
signaling pathway" evidence=TAS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005739 GO:GO:0005634
GO:GO:0009536 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006355
GO:GO:0006351 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 HOGENOM:HOG000034820 KO:K14492
EMBL:AF305722 EMBL:AL163972 IPI:IPI00540746 PIR:T49039
RefSeq:NP_567037.1 UniGene:At.5240 ProteinModelPortal:Q9FPR6
SMR:Q9FPR6 STRING:Q9FPR6 EnsemblPlants:AT3G56380.1 GeneID:824805
KEGG:ath:AT3G56380 GeneFarm:4130 TAIR:At3g56380 InParanoid:Q9FPR6
OMA:MEEELHV PhylomeDB:Q9FPR6 ProtClustDB:CLSN2917444
Genevestigator:Q9FPR6 GermOnline:AT3G56380 Uniprot:Q9FPR6
Length = 153
Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
Identities = 74/138 (53%), Positives = 103/138 (74%)
Query: 50 HVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKK 109
HVLAVDD+LIDRK++E +L++SS +VT ++G +ALEYLGL D P +
Sbjct: 21 HVLAVDDNLIDRKLVERILKISSCKVTTAENGLRALEYLGLGD---------PQQTDSLT 71
Query: 110 EESRVNLIMTDYCMPGMTGYDLLKRLKVSS-WKDVPVVVMSSENVPSRVTMCLEEGAEEF 168
+VNLI+TDYCMPGMTG++LLK++K SS K+VPVV++SSEN+P+R+ CL GA+ F
Sbjct: 72 NVMKVNLIITDYCMPGMTGFELLKKVKESSNLKEVPVVILSSENIPTRINKCLASGAQMF 131
Query: 169 LLKPVRLSDLEKLQPRLL 186
+ KP++LSD+EKL+ LL
Sbjct: 132 MQKPLKLSDVEKLKCHLL 149
>UNIPROTKB|Q4GZK8 [details] [associations]
symbol:rr3 "Type A response regulator 3" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0005737
GO:GO:0009735 GO:GO:0006355 GO:GO:0035556 GO:GO:0007623
GO:GO:0010114 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 HOGENOM:HOG000034820 EMBL:CM000127 EMBL:AJ938072
STRING:Q4GZK8 Uniprot:Q4GZK8
Length = 131
Score = 243 (90.6 bits), Expect = 3.8e-33, Sum P(2) = 3.8e-33
Identities = 46/77 (59%), Positives = 64/77 (83%)
Query: 111 ESRVNLIMTDYCMPGMTGYDLLKRLKVSS-WKDVPVVVMSSENVPSRVTMCLEEGAEEFL 169
+ V++I+TDYCMP MTG+DLLKR+K S+ K++PVV+MSSEN P+R+ CLEEGAE+FL
Sbjct: 53 DRNVHMIITDYCMPEMTGFDLLKRVKESAELKEIPVVLMSSENSPTRIRRCLEEGAEDFL 112
Query: 170 LKPVRLSDLEKLQPRLL 186
+KPVR SD+ +L R++
Sbjct: 113 IKPVRPSDVSRLCNRVI 129
Score = 134 (52.2 bits), Expect = 3.8e-33, Sum P(2) = 3.8e-33
Identities = 27/45 (60%), Positives = 34/45 (75%)
Query: 50 HVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNL 94
HVLAVDDS++DR ++ LLR S Y+VT VDSG +ALE L L N+
Sbjct: 12 HVLAVDDSIVDRTVISRLLRSSKYRVTTVDSGKRALEVLSLDRNV 56
>TAIR|locus:2027237 [details] [associations]
symbol:ARR15 "response regulator 15" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] [GO:0009736 "cytokinin mediated signaling
pathway" evidence=IGI;RCA;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007623
"circadian rhythm" evidence=RCA] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0006351 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 EMBL:AC008263 EMBL:AC013258
EMBL:AF305720 IPI:IPI00538856 RefSeq:NP_177627.1 UniGene:At.11589
ProteinModelPortal:Q7G8V2 SMR:Q7G8V2 IntAct:Q7G8V2 STRING:Q7G8V2
EnsemblPlants:AT1G74890.1 GeneID:843828 KEGG:ath:AT1G74890
GeneFarm:4128 TAIR:At1g74890 HOGENOM:HOG000034820 InParanoid:Q7G8V2
KO:K14492 OMA:KISACKV PhylomeDB:Q7G8V2 ProtClustDB:CLSN2914197
Genevestigator:Q7G8V2 GermOnline:AT1G74890 Uniprot:Q7G8V2
Length = 206
Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
Identities = 73/139 (52%), Positives = 108/139 (77%)
Query: 50 HVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKK 109
HVLAVDDS +DRK++E LL++S+ +VT V+SG +AL+YLGL + N S S L
Sbjct: 19 HVLAVDDSFVDRKVIERLLKISACKVTTVESGTRALQYLGL-----DGDNGS-SGL---- 68
Query: 110 EESRVNLIMTDYCMPGMTGYDLLKRLKVSS-WKDVPVVVMSSENVPSRVTMCLEEGAEEF 168
++ +VNLI+TDY MPG+TGY+LLK++K SS +++PVV+MSSEN+ R+ C+ EGAEEF
Sbjct: 69 KDLKVNLIVTDYSMPGLTGYELLKKIKESSALREIPVVIMSSENIQPRIEQCMIEGAEEF 128
Query: 169 LLKPVRLSDLEKLQPRLLK 187
LLKPV+L+D+++L+ +++
Sbjct: 129 LLKPVKLADVKRLKELIMR 147
>UNIPROTKB|Q4GZK4 [details] [associations]
symbol:rr7 "Type A response regulator 7" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0009735 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 EMBL:AJ938076
ProteinModelPortal:Q4GZK4 KEGG:dosa:Os07t0449700-01 Gramene:Q4GZK4
Uniprot:Q4GZK4
Length = 206
Score = 253 (94.1 bits), Expect = 8.6e-30, Sum P(2) = 8.6e-30
Identities = 48/78 (61%), Positives = 65/78 (83%)
Query: 111 ESRVNLIMTDYCMPGMTGYDLLKRLKVSS-WKDVPVVVMSSENVPSRVTMCLEEGAEEFL 169
E V++I+TDY MP MTGYDLLK++K SS K +PVV+MSSENVP+R++ CLEEGAE+FL
Sbjct: 129 EPNVSMIITDYWMPEMTGYDLLKKIKESSELKQIPVVIMSSENVPTRISRCLEEGAEDFL 188
Query: 170 LKPVRLSDLEKLQPRLLK 187
LKPVR +D+ ++ R+L+
Sbjct: 189 LKPVRPADISRITSRMLQ 206
Score = 92 (37.4 bits), Expect = 8.6e-30, Sum P(2) = 8.6e-30
Identities = 22/45 (48%), Positives = 30/45 (66%)
Query: 50 HVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNL 94
+V+AVDDS +DR ++ LLR S Y+ DSG +ALE LG N+
Sbjct: 92 YVMAVDDSSVDRAVITALLRRSKYR----DSGKRALEILGSEPNV 132
>UNIPROTKB|Q4GZK9 [details] [associations]
symbol:rr2 "Type A response regulator 2" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0009735 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 EMBL:AJ938071
ProteinModelPortal:Q4GZK9 KEGG:dosa:Os02t0557800-01 Gramene:Q4GZK9
Uniprot:Q4GZK9
Length = 252
Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
Identities = 63/147 (42%), Positives = 100/147 (68%)
Query: 51 VLAVDDSLIDRKILENLLRV-------------SSYQVTCVDSGDKALEYLGLI-DNLEN 96
VL VDDS +DR+++E LLR + + VT VDSG KA+E LG + ++
Sbjct: 8 VLVVDDSPVDRRVVELLLRAHCGGGGGAAAGEAAPFHVTAVDSGKKAMELLGRRRGDRDH 67
Query: 97 NSNASPSTLSTKKEESRVNLIMTDYCMPGMTGYDLLKRLK-VSSWKDVPVVVMSSENVPS 155
+ +SP+ + +++ +++++TDYCMP MTGYDLLK +K + S +PVVVMSSEN P
Sbjct: 68 LTPSSPAAAAAANDQA-IDIVLTDYCMPEMTGYDLLKAIKALGSPNPIPVVVMSSENEPQ 126
Query: 156 RVTMCLEEGAEEFLLKPVRLSDLEKLQ 182
R++ CL GAE+F+LKP++++D+++L+
Sbjct: 127 RISRCLTAGAEDFILKPLKMNDVQRLR 153
>UNIPROTKB|Q4GZL0 [details] [associations]
symbol:rr1 "Type A response regulator 1" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0009735 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:CM000129 EMBL:AJ938070 eggNOG:NOG76823
Uniprot:Q4GZL0
Length = 231
Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 62/148 (41%), Positives = 94/148 (63%)
Query: 51 VLAVDDSLIDRKILENLLRVS----SYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLS 106
VL VDDS +DR++++ LL S S+ V VDS KA+E+LGL +
Sbjct: 10 VLLVDDSPVDRRVVQLLLSSSACAGSFHVIAVDSAKKAMEFLGLKEE------------- 56
Query: 107 TKKEESRVNLIMTDYCMPGMTGYDLLKRLK-VSSWKDVPVVVMSSENVPSRVTMCLEEGA 165
KE++ +++++TDYCMP MTGY+LLK +K +S K +PV+VMSSEN P R++ C+ GA
Sbjct: 57 -GKEQA-IDMVLTDYCMPEMTGYELLKAIKALSPLKPIPVIVMSSENEPQRISRCMNAGA 114
Query: 166 EEFLLKPVRLSDLEKLQPRLLKSPNRSC 193
E+F++KP++ D+++L R N C
Sbjct: 115 EDFIVKPLQSKDVQRL--RKCSPANTQC 140
>UNIPROTKB|Q4GZK3 [details] [associations]
symbol:rr8 "Type A response regulator 8" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0009735 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:AJ938077 ProteinModelPortal:Q4GZK3
STRING:Q4GZK3 KEGG:dosa:Os08t0376700-01 KEGG:dosa:Os08t0377200-01
Gramene:Q4GZK3 Uniprot:Q4GZK3
Length = 121
Score = 190 (71.9 bits), Expect = 5.2e-21, Sum P(2) = 5.2e-21
Identities = 36/78 (46%), Positives = 57/78 (73%)
Query: 111 ESRVNLIMTDYCMPGMTGYDLLKRLKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAEEFL 169
E V++I++DYCMP MTGY+LL +K S +PVV+ SS+N+P R+ CL+ GA++++
Sbjct: 46 EHDVDMIVSDYCMPDMTGYNLLMEVKKSPKLAHLPVVIASSDNIPERIRKCLDGGAKDYI 105
Query: 170 LKPVRLSDLEKLQPRLLK 187
LKPV++ D+ PR++K
Sbjct: 106 LKPVKIVDV----PRIMK 119
Score = 71 (30.1 bits), Expect = 5.2e-21, Sum P(2) = 5.2e-21
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 50 HVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYL 88
HVL VDD+ +DR ++ L + +VT V+S +AL +L
Sbjct: 5 HVLVVDDTHVDRHVVSMALMRHNVRVTAVESVMQALMFL 43
>TAIR|locus:2054895 [details] [associations]
symbol:AT2G07440 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0007623 "circadian rhythm"
evidence=RCA] [GO:0009736 "cytokinin mediated signaling pathway"
evidence=RCA] EMBL:CP002685 GenomeReviews:CT485783_GR EMBL:AC006217
IPI:IPI00531473 PIR:H84485 RefSeq:NP_178754.1 UniGene:At.63414
ProteinModelPortal:Q9ZQJ8 SMR:Q9ZQJ8 EnsemblPlants:AT2G07440.1
GeneID:815313 KEGG:ath:AT2G07440 TAIR:At2g07440 InParanoid:Q9ZQJ8
PhylomeDB:Q9ZQJ8 ArrayExpress:Q9ZQJ8 Genevestigator:Q9ZQJ8
Uniprot:Q9ZQJ8
Length = 136
Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 28/51 (54%), Positives = 43/51 (84%)
Query: 138 SSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKS 188
++++ + VV+MSSENVP+R++ CLE+GAEEF LKPV+L D KL+P ++K+
Sbjct: 11 AAFRSIHVVIMSSENVPTRISRCLEKGAEEFFLKPVKLVDHTKLKPHMMKT 61
>UNIPROTKB|Q0C4H5 [details] [associations]
symbol:cheY "Chemotaxis protein CheY" species:228405
"Hyphomonas neptunium ATCC 15444" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 HOGENOM:HOG000034820 EMBL:CP000158
GenomeReviews:CP000158_GR KO:K03413 RefSeq:YP_759368.1
ProteinModelPortal:Q0C4H5 STRING:Q0C4H5 GeneID:4290241
KEGG:hne:HNE_0639 PATRIC:32214082 OMA:WNMPVMN
BioCyc:HNEP228405:GI69-682-MONOMER Uniprot:Q0C4H5
Length = 121
Score = 115 (45.5 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 27/70 (38%), Positives = 37/70 (52%)
Query: 111 ESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSS-ENVPSRVTMCLEEGAEEFL 169
ES + I+ D+ MP M G D L+ L+ VP +V S EN P + L GA+EF+
Sbjct: 43 ESMPDAILLDWNMPTMNGIDFLRALRREEGGKVPRIVFCSIENDPEHINEALRSGADEFI 102
Query: 170 LKPVRLSDLE 179
+KP LE
Sbjct: 103 MKPFDADILE 112
Score = 58 (25.5 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 52 LAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALE 86
L VDDS + RK+ ++R + VT G +AL+
Sbjct: 5 LVVDDSRVVRKVASRIVRDLGFSVTEAGDGAEALK 39
>UNIPROTKB|Q9KKK8 [details] [associations]
symbol:VC_A1096 "Chemotaxis protein CheY" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 GO:GO:0005622
GO:GO:0006935 GO:GO:0004871 EMBL:AE003853 GenomeReviews:AE003853_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 OMA:MEEELHV
KO:K03413 HSSP:P06143 PIR:D82380 RefSeq:NP_233476.1
ProteinModelPortal:Q9KKK8 DNASU:2612407 GeneID:2612407
KEGG:vch:VCA1096 PATRIC:20086710 ProtClustDB:CLSK789264
Uniprot:Q9KKK8
Length = 125
Score = 107 (42.7 bits), Expect = 7.5e-11, Sum P(2) = 7.5e-11
Identities = 24/80 (30%), Positives = 48/80 (60%)
Query: 108 KKEESRVNLIMTDYCMPGMTGYDLLKRLKVSS-WKDVPVVVMSSENVPSRVTMCLEEGAE 166
K +++R ++I++D MP MTG++ +K +++ S +K P++++++E P + GA
Sbjct: 46 KAQKARFDVIISDVNMPVMTGFEFVKAVRMQSQYKFTPILMLTTETSPEKKQEGKAVGAT 105
Query: 167 EFLLKPVRLSDLEKLQPRLL 186
+L+KP L K R+L
Sbjct: 106 GWLVKPFNPETLLKTLQRVL 125
Score = 62 (26.9 bits), Expect = 7.5e-11, Sum P(2) = 7.5e-11
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKAL 85
VLAVDDS+ R+++ + L+ + Y+V G +AL
Sbjct: 10 VLAVDDSISIRQMVSHTLQDAGYEVETAADGREAL 44
>TIGR_CMR|VC_A1096 [details] [associations]
symbol:VC_A1096 "chemotaxis protein CheY" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 OMA:MEEELHV KO:K03413
HSSP:P06143 PIR:D82380 RefSeq:NP_233476.1 ProteinModelPortal:Q9KKK8
DNASU:2612407 GeneID:2612407 KEGG:vch:VCA1096 PATRIC:20086710
ProtClustDB:CLSK789264 Uniprot:Q9KKK8
Length = 125
Score = 107 (42.7 bits), Expect = 7.5e-11, Sum P(2) = 7.5e-11
Identities = 24/80 (30%), Positives = 48/80 (60%)
Query: 108 KKEESRVNLIMTDYCMPGMTGYDLLKRLKVSS-WKDVPVVVMSSENVPSRVTMCLEEGAE 166
K +++R ++I++D MP MTG++ +K +++ S +K P++++++E P + GA
Sbjct: 46 KAQKARFDVIISDVNMPVMTGFEFVKAVRMQSQYKFTPILMLTTETSPEKKQEGKAVGAT 105
Query: 167 EFLLKPVRLSDLEKLQPRLL 186
+L+KP L K R+L
Sbjct: 106 GWLVKPFNPETLLKTLQRVL 125
Score = 62 (26.9 bits), Expect = 7.5e-11, Sum P(2) = 7.5e-11
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKAL 85
VLAVDDS+ R+++ + L+ + Y+V G +AL
Sbjct: 10 VLAVDDSISIRQMVSHTLQDAGYEVETAADGREAL 44
>UNIPROTKB|Q9WYT9 [details] [associations]
symbol:TM_0468 "Response regulator" species:243274
"Thermotoga maritima MSB8" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 GO:GO:0046872
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
EMBL:AE000512 GenomeReviews:AE000512_GR KO:K02485 EMBL:AGIJ01000001
PIR:D72374 RefSeq:NP_228278.1 PDB:3DGE PDB:3DGF PDB:3GL9
PDBsum:3DGE PDBsum:3DGF PDBsum:3GL9 IntAct:Q9WYT9 GeneID:897499
KEGG:tma:TM0468 PATRIC:23935833 OMA:WKRIPVI ProtClustDB:CLSK875163
EvolutionaryTrace:Q9WYT9 Uniprot:Q9WYT9
Length = 122
Score = 101 (40.6 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 22/66 (33%), Positives = 38/66 (57%)
Query: 108 KKEESRVNLIMTDYCMPGMTGYDLLKRLKVSS-WKDVPVVVMSSENVPSRVTMCLEEGAE 166
K E +LI+ D MP M G+ +LK+L+ WK +PV+V++++ ++ L GA
Sbjct: 41 KLSEFTPDLIVLDIMMPVMDGFTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGAR 100
Query: 167 EFLLKP 172
+ + KP
Sbjct: 101 KVMRKP 106
Score = 67 (28.6 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYL 88
VL VDDS + RKI+ L+ Y+V ++G ALE L
Sbjct: 5 VLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKL 42
>UNIPROTKB|Q4KG39 [details] [associations]
symbol:cheY "Chemotaxis protein CheY" species:220664
"Pseudomonas protegens Pf-5" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0005622 GO:GO:0006935
EMBL:CP000076 GenomeReviews:CP000076_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 KO:K03413 OMA:FGFVISD RefSeq:YP_258794.1
ProteinModelPortal:Q4KG39 SMR:Q4KG39 STRING:Q4KG39 GeneID:3477601
KEGG:pfl:PFL_1668 PATRIC:19872565 ProtClustDB:CLSK715044
BioCyc:PFLU220664:GIX8-1676-MONOMER Uniprot:Q4KG39
Length = 123
Score = 104 (41.7 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 21/71 (29%), Positives = 43/71 (60%)
Query: 114 VNLIMTDYCMPGMTGYDLLKRLKVSS-WKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKP 172
++ ++TD+ MPGMTG DLL+ ++ K +PV+++++E ++ + G +++KP
Sbjct: 46 IDFLVTDWNMPGMTGIDLLRHVRADEKLKHLPVLMVTAEAKREQIIEAAQAGVNGYVVKP 105
Query: 173 VRLSDL-EKLQ 182
L EK++
Sbjct: 106 FTAQALKEKIE 116
Score = 60 (26.2 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 20/52 (38%), Positives = 27/52 (51%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTC-VDSGDKALEYL--GLIDNLENNSN 99
+L VDD R+I++NLLR + T D G A+ L G ID L + N
Sbjct: 3 ILIVDDFSTMRRIIKNLLRDLGFTNTVEADDGTTAIPVLNSGSIDFLVTDWN 54
>TIGR_CMR|CPS_1520 [details] [associations]
symbol:CPS_1520 "chemotaxis protein CheY" species:167879
"Colwellia psychrerythraea 34H" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 HOGENOM:HOG000034820 OMA:LEANDIY
KO:K03413 RefSeq:YP_268262.1 ProteinModelPortal:Q485K3 SMR:Q485K3
STRING:Q485K3 GeneID:3522501 KEGG:cps:CPS_1520 PATRIC:21466247
BioCyc:CPSY167879:GI48-1601-MONOMER Uniprot:Q485K3
Length = 127
Score = 105 (42.0 bits), Expect = 4.3e-10, Sum P(2) = 4.3e-10
Identities = 19/66 (28%), Positives = 41/66 (62%)
Query: 115 NLIMTDYCMPGMTGYDLLKRLKV-SSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPV 173
+ ++TD+ MPGM G DLLK ++ ++ +PV+++++E ++ M + G +++KP
Sbjct: 51 DFVVTDWNMPGMQGIDLLKAIRADANLSHIPVLLITAEAKKEQIIMAAQAGVNGYIVKPF 110
Query: 174 RLSDLE 179
+ L+
Sbjct: 111 TAATLK 116
Score = 57 (25.1 bits), Expect = 4.3e-10, Sum P(2) = 4.3e-10
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 51 VLAVDDSLIDRKILENLLRVSSY-QVTCVDSGDKALEYL 88
VL VDD R+I++NLLR + + D G+ AL L
Sbjct: 7 VLVVDDFSTMRRIVKNLLRDLGFTNIQEADDGNTALPML 45
>TIGR_CMR|GSU_1117 [details] [associations]
symbol:GSU_1117 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 HSSP:P06143
RefSeq:NP_952170.1 ProteinModelPortal:Q74E47 GeneID:2686890
KEGG:gsu:GSU1117 PATRIC:22024996 OMA:ASNVIMI ProtClustDB:CLSK828188
BioCyc:GSUL243231:GH27-1119-MONOMER Uniprot:Q74E47
Length = 127
Score = 99 (39.9 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 23/78 (29%), Positives = 43/78 (55%)
Query: 110 EESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFL 169
++ VN+I+TD MP M G L+ L S + +++ + V S + + GA E++
Sbjct: 47 QQREVNVIVTDINMPEMNGITFLRELNKSFPRSNVIMITAYGGVESYIE-AMNLGAFEYI 105
Query: 170 LKPVRLSDLEKLQPRLLK 187
KPV+L +L+ + ++ K
Sbjct: 106 NKPVKLDELKSILTKIFK 123
Score = 57 (25.1 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYL 88
+L VDD R L LL ++V V +G +AL YL
Sbjct: 9 ILVVDDEENARIGLTKLLEREGFEVASVSNGFEALNYL 46
>UNIPROTKB|Q9KQD5 [details] [associations]
symbol:VC_2065 "Chemotaxis protein CheY" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0006935 GO:GO:0004871
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 KO:K03413
OMA:GHYDFLV HSSP:P06143 PIR:C82123 RefSeq:NP_231697.1
ProteinModelPortal:Q9KQD5 SMR:Q9KQD5 DNASU:2613445 GeneID:2613445
KEGG:vch:VC2065 PATRIC:20083164 ProtClustDB:CLSK874661
Uniprot:Q9KQD5
Length = 130
Score = 103 (41.3 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 22/69 (31%), Positives = 41/69 (59%)
Query: 115 NLIMTDYCMPGMTGYDLLKRLKVSS-WKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPV 173
+ ++TD+ MPGM G DLLK ++ K +PV+++++E ++ + G +++KP
Sbjct: 55 DFVVTDWNMPGMQGIDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPF 114
Query: 174 RLSDL-EKL 181
+ L EKL
Sbjct: 115 TAATLKEKL 123
Score = 51 (23.0 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 16/39 (41%), Positives = 21/39 (53%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTC-VDSGDKALEYL 88
+L VDD R+I++NLLR + T D G AL L
Sbjct: 11 ILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPML 49
>TIGR_CMR|VC_2065 [details] [associations]
symbol:VC_2065 "chemotaxis protein CheY" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 KO:K03413 OMA:GHYDFLV
HSSP:P06143 PIR:C82123 RefSeq:NP_231697.1 ProteinModelPortal:Q9KQD5
SMR:Q9KQD5 DNASU:2613445 GeneID:2613445 KEGG:vch:VC2065
PATRIC:20083164 ProtClustDB:CLSK874661 Uniprot:Q9KQD5
Length = 130
Score = 103 (41.3 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 22/69 (31%), Positives = 41/69 (59%)
Query: 115 NLIMTDYCMPGMTGYDLLKRLKVSS-WKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPV 173
+ ++TD+ MPGM G DLLK ++ K +PV+++++E ++ + G +++KP
Sbjct: 55 DFVVTDWNMPGMQGIDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPF 114
Query: 174 RLSDL-EKL 181
+ L EKL
Sbjct: 115 TAATLKEKL 123
Score = 51 (23.0 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 16/39 (41%), Positives = 21/39 (53%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTC-VDSGDKALEYL 88
+L VDD R+I++NLLR + T D G AL L
Sbjct: 11 ILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPML 49
>DICTYBASE|DDB_G0284331 [details] [associations]
symbol:regA "response regulator receiver
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0030587 "sorocarp development" evidence=IMP] [GO:0051281
"positive regulation of release of sequestered calcium ion into
cytosol" evidence=IMP] [GO:0051279 "regulation of release of
sequestered calcium ion into cytosol" evidence=IMP] [GO:0046058
"cAMP metabolic process" evidence=IMP] [GO:0031276 "negative
regulation of lateral pseudopodium assembly" evidence=IMP]
[GO:0004115 "3',5'-cyclic-AMP phosphodiesterase activity"
evidence=IDA;IMP] [GO:0005622 "intracellular" evidence=TAS]
[GO:0006970 "response to osmotic stress" evidence=TAS] [GO:0030435
"sporulation resulting in formation of a cellular spore"
evidence=IMP] [GO:0007275 "multicellular organismal development"
evidence=IMP] [GO:0047555 "3',5'-cyclic-GMP phosphodiesterase
activity" evidence=IDA] [GO:0006198 "cAMP catabolic process"
evidence=IDA] [GO:0035556 "intracellular signal transduction"
evidence=IEA] [GO:0008081 "phosphoric diester hydrolase activity"
evidence=IEA] [GO:0007165 "signal transduction" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0004114 "3',5'-cyclic-nucleotide
phosphodiesterase activity" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0000156 "phosphorelay
response regulator activity" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0030552 "cAMP binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR001789 InterPro:IPR002073 InterPro:IPR003607
InterPro:IPR023088 InterPro:IPR023174 Pfam:PF00072 Pfam:PF00233
PRINTS:PR00387 PROSITE:PS00126 PROSITE:PS50110 SMART:SM00448
SMART:SM00471 dictyBase:DDB_G0284331 GO:GO:0005829
GenomeReviews:CM000153_GR GO:GO:0006355 GO:GO:0035556 GO:GO:0046872
GO:GO:0030435 GO:GO:0030587 GO:GO:0005622 GO:GO:0006970
GO:GO:0051281 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG3706 EMBL:AAFI02000064 GO:GO:0030552 GO:GO:0031276
GO:GO:0004115 GO:GO:0006198 Gene3D:1.10.1300.10 EMBL:U60170
EMBL:AJ005398 RefSeq:XP_638612.1 ProteinModelPortal:Q23917
STRING:Q23917 EnsemblProtists:DDB0191479 GeneID:8624583
KEGG:ddi:DDB_G0284331 OMA:SHYETIC ProtClustDB:CLSZ2728943
Uniprot:Q23917
Length = 793
Score = 111 (44.1 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 26/82 (31%), Positives = 48/82 (58%)
Query: 109 KEESRVNLIMTDYCMPGMTGYDLLKRLKVSS-WKDVPVVVMSSENVPSRVTM-CLEEGAE 166
K + + +L++TD MP +TG+DLL+R+ + +PV++MS V + ++ G +
Sbjct: 201 KGQQKYDLVLTDVMMPHITGFDLLQRINDHPVHRHIPVILMSGTAVDYKYANDTIKIGGQ 260
Query: 167 EFLLKPVRLSDLEKLQPRLLKS 188
+FL KP+ L+K +L+S
Sbjct: 261 DFLTKPIAKELLKKKIDTVLQS 282
Score = 87 (35.7 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYL 88
+L DD + RKIL NLL+ Y VT V +G+ A EY+
Sbjct: 162 ILVADDDDVQRKILNNLLKKFHYNVTLVPNGEIAWEYI 199
>UNIPROTKB|Q3ADB1 [details] [associations]
symbol:cheY1 "Chemotaxis protein CheY" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0005622 GO:GO:0006935 GO:GO:0004871
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 RefSeq:YP_359873.1 ProteinModelPortal:Q3ADB1
STRING:Q3ADB1 GeneID:3728270 KEGG:chy:CHY_1026 PATRIC:21275187
OMA:GATAWIT BioCyc:CHYD246194:GJCN-1025-MONOMER Uniprot:Q3ADB1
Length = 120
Score = 90 (36.7 bits), Expect = 5.1e-08, Sum P(2) = 5.1e-08
Identities = 18/63 (28%), Positives = 39/63 (61%)
Query: 111 ESRVNLIMTDYCMPGMTGYDLLKRLK-VSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFL 169
+ + +LI+TD MP M G +++++ +S++K PV+V+++E+ ++ GA ++
Sbjct: 43 KEKFDLIITDLNMPEMDGITFIQKVRALSNYKFTPVIVLTTESQAAKKEQARRAGATAWI 102
Query: 170 LKP 172
KP
Sbjct: 103 TKP 105
Score = 54 (24.1 bits), Expect = 5.1e-08, Sum P(2) = 5.1e-08
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 51 VLAVDDSL-IDRKILENLLRVSSYQVTCVDSGDKALEYLG 89
+LA+DDS + + I +LLR +QV G +AL+ LG
Sbjct: 4 ILALDDSATMLQSIKISLLR-KGHQVATFTKGSEALDMLG 42
>TIGR_CMR|CHY_1026 [details] [associations]
symbol:CHY_1026 "chemotaxis protein CheY" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 HOGENOM:HOG000034820 RefSeq:YP_359873.1
ProteinModelPortal:Q3ADB1 STRING:Q3ADB1 GeneID:3728270
KEGG:chy:CHY_1026 PATRIC:21275187 OMA:GATAWIT
BioCyc:CHYD246194:GJCN-1025-MONOMER Uniprot:Q3ADB1
Length = 120
Score = 90 (36.7 bits), Expect = 5.1e-08, Sum P(2) = 5.1e-08
Identities = 18/63 (28%), Positives = 39/63 (61%)
Query: 111 ESRVNLIMTDYCMPGMTGYDLLKRLK-VSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFL 169
+ + +LI+TD MP M G +++++ +S++K PV+V+++E+ ++ GA ++
Sbjct: 43 KEKFDLIITDLNMPEMDGITFIQKVRALSNYKFTPVIVLTTESQAAKKEQARRAGATAWI 102
Query: 170 LKP 172
KP
Sbjct: 103 TKP 105
Score = 54 (24.1 bits), Expect = 5.1e-08, Sum P(2) = 5.1e-08
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 51 VLAVDDSL-IDRKILENLLRVSSYQVTCVDSGDKALEYLG 89
+LA+DDS + + I +LLR +QV G +AL+ LG
Sbjct: 4 ILALDDSATMLQSIKISLLR-KGHQVATFTKGSEALDMLG 42
>TIGR_CMR|CJE_1261 [details] [associations]
symbol:CJE_1261 "chemotaxis protein CheY" species:195099
"Campylobacter jejuni RM1221" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413
OMA:DVLITDW ProtClustDB:CLSK872349 RefSeq:YP_179249.1
ProteinModelPortal:Q5HTY6 STRING:Q5HTY6 GeneID:3231768
KEGG:cjr:CJE1261 PATRIC:20044318
BioCyc:CJEJ195099:GJC0-1287-MONOMER Uniprot:Q5HTY6
Length = 130
Score = 125 (49.1 bits), Expect = 5.4e-08, P = 5.4e-08
Identities = 31/100 (31%), Positives = 56/100 (56%)
Query: 85 LEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTGYDLLKRLKVSS-WKDV 143
L LG D LE L TK E+ V +++TD+ MP M G +L+K+++ ++D+
Sbjct: 20 LTRLGHDDVLEAEHGVEAWDLLTKNED--VKVLITDWNMPEMNGLELVKKVRAEKKYEDM 77
Query: 144 PVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDL-EKLQ 182
P++++++E + V L+ G +++KP L EKL+
Sbjct: 78 PIIMVTTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLE 117
>TAIR|locus:2065398 [details] [associations]
symbol:RR14 "response regulator 14" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009736
"cytokinin mediated signaling pathway" evidence=RCA;TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0042802 "identical
protein binding" evidence=IPI] [GO:0010029 "regulation of seed
germination" evidence=RCA] [GO:0031537 "regulation of anthocyanin
metabolic process" evidence=RCA] [GO:0048831 "regulation of shoot
system development" evidence=RCA] InterPro:IPR001005
InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009736
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491
eggNOG:COG0745 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:AC006069
EMBL:AY099726 EMBL:AY128887 EMBL:AY088149 IPI:IPI00545640
PIR:G84428 RefSeq:NP_178285.1 UniGene:At.42470
ProteinModelPortal:Q8L9Y3 SMR:Q8L9Y3 IntAct:Q8L9Y3 STRING:Q8L9Y3
EnsemblPlants:AT2G01760.1 GeneID:814707 KEGG:ath:AT2G01760
GeneFarm:3930 TAIR:At2g01760 HOGENOM:HOG000034077 InParanoid:Q8L9Y3
OMA:SWILERS PhylomeDB:Q8L9Y3 ProtClustDB:CLSN2913129
Genevestigator:Q8L9Y3 GermOnline:AT2G01760 Uniprot:Q8L9Y3
Length = 382
Score = 125 (49.1 bits), Expect = 6.1e-08, Sum P(2) = 6.1e-08
Identities = 27/90 (30%), Positives = 57/90 (63%)
Query: 104 TLSTKKEESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEE 163
T+ ++++S +L+++D MPGM GY+LL+++ + D+PV++MS + + V +
Sbjct: 48 TILRERKDS-FDLVLSDVHMPGMNGYNLLQQVGLLEM-DLPVIMMSVDGRTTTVMTGINH 105
Query: 164 GAEEFLLKPVRLSDLEKLQPRLLKSPNRSC 193
GA ++L+KP+R +L+ + +++ R C
Sbjct: 106 GACDYLIKPIRPEELKNIWQHVVR---RKC 132
Score = 56 (24.8 bits), Expect = 6.1e-08, Sum P(2) = 6.1e-08
Identities = 16/38 (42%), Positives = 18/38 (47%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYL 88
+L VDD ILE +L YQVT D AL L
Sbjct: 13 ILVVDDDTSCLFILEKMLLRLMYQVTICSQADVALTIL 50
>TAIR|locus:2044376 [details] [associations]
symbol:PRR9 "pseudo-response regulator 9" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0007623 "circadian rhythm"
evidence=IMP;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0009266 "response to temperature stimulus" evidence=IGI]
[GO:0010017 "red or far-red light signaling pathway" evidence=IMP]
[GO:0003677 "DNA binding" evidence=IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
InterPro:IPR001789 InterPro:IPR010402 Pfam:PF00072 Pfam:PF06203
PROSITE:PS50110 PROSITE:PS51017 SMART:SM00448 GO:GO:0005634
GO:GO:0045892 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0007623 GO:GO:0006351 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034018
GO:GO:0010017 GO:GO:0009266 EMBL:AB046953 EMBL:AF272040
EMBL:AC005310 EMBL:AY099676 EMBL:AY128856 IPI:IPI00545462
PIR:T02680 RefSeq:NP_566085.1 UniGene:At.1675 UniGene:At.65052
ProteinModelPortal:Q8L500 SMR:Q8L500 STRING:Q8L500 PRIDE:Q8L500
EnsemblPlants:AT2G46790.1 GeneID:819292 KEGG:ath:AT2G46790
GeneFarm:4360 TAIR:At2g46790 eggNOG:COG0745 InParanoid:Q8L500
KO:K12128 OMA:HEACKNI PhylomeDB:Q8L500 ProtClustDB:CLSN2688972
Genevestigator:Q8L500 GermOnline:AT2G46790 Uniprot:Q8L500
Length = 468
Score = 128 (50.1 bits), Expect = 7.5e-08, Sum P(2) = 7.5e-08
Identities = 26/75 (34%), Positives = 52/75 (69%)
Query: 109 KEESR-VNLIMTDYCMPGMTGYDLLKR-LKVSSWKDVPVVVMSSENVPSRVTMCLEEGAE 166
KE+S ++LI+T+ +P ++G+ LL ++ + K++PV++MSS++ V C+ GA
Sbjct: 77 KEKSHNIDLILTELDLPSISGFALLALVMEHEACKNIPVIMMSSQDSIKMVLKCMLRGAA 136
Query: 167 EFLLKPVRLSDLEKL 181
++L+KP+R ++L+ L
Sbjct: 137 DYLIKPMRKNELKNL 151
Score = 54 (24.1 bits), Expect = 7.5e-08, Sum P(2) = 7.5e-08
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYL 88
VL V+ R+I+ LLR Y+V V G A E L
Sbjct: 39 VLLVESDYSTRQIITALLRKCCYKVVAVSDGLAAWEVL 76
>TAIR|locus:2008585 [details] [associations]
symbol:ARR11 "response regulator 11" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0009736 "cytokinin mediated signaling pathway"
evidence=RCA;TAS] [GO:0009735 "response to cytokinin stimulus"
evidence=IGI] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 KO:K14491 eggNOG:COG0745 InterPro:IPR017053
PIRSF:PIRSF036392 EMBL:AJ005194 EMBL:AC008113 EMBL:BT008768
EMBL:AB041532 IPI:IPI00521272 PIR:C96700 PIR:T52034 PIR:T52074
RefSeq:NP_176938.1 UniGene:At.121 ProteinModelPortal:Q9FXD6
SMR:Q9FXD6 IntAct:Q9FXD6 STRING:Q9FXD6 EnsemblPlants:AT1G67710.1
GeneID:843096 KEGG:ath:AT1G67710 GeneFarm:3922 TAIR:At1g67710
HOGENOM:HOG000116485 InParanoid:Q9FXD6 OMA:WITRYDE PhylomeDB:Q9FXD6
ProtClustDB:CLSN2914476 Genevestigator:Q9FXD6 GermOnline:AT1G67710
Uniprot:Q9FXD6
Length = 521
Score = 120 (47.3 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 24/80 (30%), Positives = 51/80 (63%)
Query: 108 KKEESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEE 167
++ + +++++D MP M G+ LL+ + + D+PV++MS + SRV ++ GA +
Sbjct: 51 RERKDGYDIVISDVNMPDMDGFKLLEHVGLEL--DLPVIMMSVDGETSRVMKGVQHGACD 108
Query: 168 FLLKPVRLSDLEKLQPRLLK 187
+LLKP+R+ +L+ + +L+
Sbjct: 109 YLLKPIRMKELKIIWQHVLR 128
Score = 64 (27.6 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 17/38 (44%), Positives = 21/38 (55%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYL 88
VL VDD KILE +L+ SY+VT +AL L
Sbjct: 13 VLVVDDDPTWLKILEKMLKKCSYEVTTCGLAREALRLL 50
>TAIR|locus:2130095 [details] [associations]
symbol:RR2 "response regulator 2" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0009736 "cytokinin
mediated signaling pathway" evidence=RCA;TAS] [GO:0009723 "response
to ethylene stimulus" evidence=IMP] [GO:0009735 "response to
cytokinin stimulus" evidence=IEP;IGI] [GO:0010150 "leaf senescence"
evidence=IMP] [GO:0009873 "ethylene mediated signaling pathway"
evidence=IMP] [GO:0010119 "regulation of stomatal movement"
evidence=IMP] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0010029 "regulation of seed germination" evidence=RCA]
[GO:0031537 "regulation of anthocyanin metabolic process"
evidence=RCA] [GO:0048831 "regulation of shoot system development"
evidence=RCA] InterPro:IPR001005 InterPro:IPR001789
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110
SMART:SM00448 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0009873 GO:GO:0010119 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0003682 GO:GO:0010150 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:Z97340 EMBL:AL161543 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491
eggNOG:COG2204 InterPro:IPR017053 PIRSF:PIRSF036392
ProtClustDB:CLSN2680844 EMBL:AB016472 EMBL:AJ005196 EMBL:DQ473518
EMBL:DQ473519 EMBL:DQ473520 EMBL:DQ473521 EMBL:AK175378
EMBL:AK175737 EMBL:AK175959 EMBL:AK176614 IPI:IPI00518324
PIR:D71427 PIR:T51247 RefSeq:NP_193346.4 UniGene:At.21955
ProteinModelPortal:Q9ZWJ9 SMR:Q9ZWJ9 IntAct:Q9ZWJ9 STRING:Q9ZWJ9
PaxDb:Q9ZWJ9 PRIDE:Q9ZWJ9 EnsemblPlants:AT4G16110.1 GeneID:827297
KEGG:ath:AT4G16110 GeneFarm:3921 TAIR:At4g16110 InParanoid:Q9ZWJ9
OMA:ILERMLM PhylomeDB:Q9ZWJ9 Genevestigator:Q9ZWJ9
GermOnline:AT4G16110 Uniprot:Q9ZWJ9
Length = 664
Score = 123 (48.4 bits), Expect = 1.3e-07, Sum P(3) = 1.3e-07
Identities = 27/90 (30%), Positives = 56/90 (62%)
Query: 99 NASPSTLST-KKEESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRV 157
N + S LS +K ++ +++++D MP M G+ LL+ + + D+PV++MS+++ S V
Sbjct: 58 NRAESALSLLRKNKNGFDIVISDVHMPDMDGFKLLEHVGLEM--DLPVIMMSADDSKSVV 115
Query: 158 TMCLEEGAEEFLLKPVRLSDLEKLQPRLLK 187
+ GA ++L+KPVR+ L+ + +++
Sbjct: 116 LKGVTHGAVDYLIKPVRIEALKNIWQHVVR 145
Score = 55 (24.4 bits), Expect = 1.3e-07, Sum P(3) = 1.3e-07
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYL 88
VL VDD ILE +L Y+VT + + AL L
Sbjct: 30 VLVVDDDPTCLMILERMLMTCLYRVTKCNRAESALSLL 67
Score = 40 (19.1 bits), Expect = 1.3e-07, Sum P(3) = 1.3e-07
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 212 SSTNSAFSKRKALSAEAPERRPKMKEVAVV 241
++ +AFS +A S+ + +R+ + + VV
Sbjct: 550 ATATAAFSTSEAYSSSSTQRKRRETDATVV 579
>UNIPROTKB|Q74DM7 [details] [associations]
symbol:cheY34H-1 "Response receiver CheY associated with
MCPs of class 34H" species:243231 "Geobacter sulfurreducens PCA"
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P08402
RefSeq:NP_952342.1 ProteinModelPortal:Q74DM7 GeneID:2688101
KEGG:gsu:GSU1289 PATRIC:22025351 OMA:FDVTEAC ProtClustDB:CLSK828284
BioCyc:GSUL243231:GH27-1257-MONOMER Uniprot:Q74DM7
Length = 121
Score = 93 (37.8 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 20/76 (26%), Positives = 46/76 (60%)
Query: 112 SRVNLIMTDYCMPGMTGYDLLKRLKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170
+RV++++TD MP + G L+K ++ + +++ P+V++++E+ SR GA +++
Sbjct: 45 TRVDMVITDLNMPNLDGIGLIKGVRANPTYRFTPIVMLTTESQESRKQEGKAAGATGWIV 104
Query: 171 KPVRLSDLEKLQPRLL 186
KP + L + ++L
Sbjct: 105 KPFKPEQLVAVVKKVL 120
Score = 46 (21.3 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVT-CVDSGDKALEYLG 89
++ VDDS R+++ L+ + Y V VD D + G
Sbjct: 5 IMTVDDSASVRQMVSFTLKQNGYDVVEAVDGKDALAKLAG 44
>TIGR_CMR|GSU_1289 [details] [associations]
symbol:GSU_1289 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
HSSP:P08402 RefSeq:NP_952342.1 ProteinModelPortal:Q74DM7
GeneID:2688101 KEGG:gsu:GSU1289 PATRIC:22025351 OMA:FDVTEAC
ProtClustDB:CLSK828284 BioCyc:GSUL243231:GH27-1257-MONOMER
Uniprot:Q74DM7
Length = 121
Score = 93 (37.8 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 20/76 (26%), Positives = 46/76 (60%)
Query: 112 SRVNLIMTDYCMPGMTGYDLLKRLKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170
+RV++++TD MP + G L+K ++ + +++ P+V++++E+ SR GA +++
Sbjct: 45 TRVDMVITDLNMPNLDGIGLIKGVRANPTYRFTPIVMLTTESQESRKQEGKAAGATGWIV 104
Query: 171 KPVRLSDLEKLQPRLL 186
KP + L + ++L
Sbjct: 105 KPFKPEQLVAVVKKVL 120
Score = 46 (21.3 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVT-CVDSGDKALEYLG 89
++ VDDS R+++ L+ + Y V VD D + G
Sbjct: 5 IMTVDDSASVRQMVSFTLKQNGYDVVEAVDGKDALAKLAG 44
>UNIPROTKB|Q48ND2 [details] [associations]
symbol:cheY1 "Chemotaxis protein CheY" species:264730
"Pseudomonas syringae pv. phaseolicola 1448A" [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0006935 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:CP000058 GenomeReviews:CP000058_GR
eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413 RefSeq:YP_273089.1
ProteinModelPortal:Q48ND2 STRING:Q48ND2 GeneID:3556464
KEGG:psp:PSPPH_0807 PATRIC:19970685 OMA:KLANYKF
ProtClustDB:CLSK642719 Uniprot:Q48ND2
Length = 122
Score = 93 (37.8 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 19/61 (31%), Positives = 40/61 (65%)
Query: 113 RVNLIMTDYCMPGMTGYDLLKRLK-VSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLK 171
+V+LI++D MP M G +K +K ++S+K P++++++E+ S+ GA+ +++K
Sbjct: 46 KVHLIISDVNMPNMDGITFVKEVKKLASYKFTPIIMLTTESQESKKAEGQAAGAKAWVVK 105
Query: 172 P 172
P
Sbjct: 106 P 106
Score = 45 (20.9 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKAL 85
VL VDDS R+++ L+ + Y V G AL
Sbjct: 5 VLVVDDSSSVRQVVGIALKSAGYDVIEACDGKDAL 39
>TIGR_CMR|CJE_1664 [details] [associations]
symbol:CJE_1664 "DNA-binding response regulator"
species:195099 "Campylobacter jejuni RM1221" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 RefSeq:YP_179645.1 ProteinModelPortal:Q5HSU0
STRING:Q5HSU0 GeneID:3232292 KEGG:cjr:CJE1664 PATRIC:20045123
OMA:KRNICEL ProtClustDB:CLSK879286
BioCyc:CJEJ195099:GJC0-1694-MONOMER Uniprot:Q5HSU0
Length = 226
Score = 122 (48.0 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 26/79 (32%), Positives = 50/79 (63%)
Query: 108 KKEESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEE 167
K ++ + +L++TD MP M G D+ + +K S DVP+VV+S+ + R+ ++ G ++
Sbjct: 46 KFKKFKPDLVITDIAMPIMDGLDMAREIKEIS-DDVPIVVLSAYSEKERLLRSIDIGIDK 104
Query: 168 FLLKPVRLSDLEKLQPRLL 186
+L+KPV + +L K+ L+
Sbjct: 105 YLIKPVDIEELFKVLDYLI 123
Score = 42 (19.8 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALE 86
+L V+D + R+ + N+L +V +GD+ L+
Sbjct: 10 ILVVEDEVKARESMINILSERFSKVIGAQNGDEGLK 45
>TIGR_CMR|GSU_0403 [details] [associations]
symbol:GSU_0403 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P06143
RefSeq:NP_951462.1 ProteinModelPortal:Q74G46 GeneID:2685717
KEGG:gsu:GSU0403 PATRIC:22023550 OMA:MEGKSID ProtClustDB:CLSK827806
BioCyc:GSUL243231:GH27-435-MONOMER Uniprot:Q74G46
Length = 120
Score = 87 (35.7 bits), Expect = 7.0e-07, Sum P(2) = 7.0e-07
Identities = 21/69 (30%), Positives = 38/69 (55%)
Query: 114 VNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPV 173
V+LI++D MP M G + +K+ + + K P+V++++E + + GA + + KP
Sbjct: 49 VDLILSDINMPNMDGLEFIKQARANGHK-APIVMITTEGGEDILKEAISSGASDSIKKPF 107
Query: 174 RLSDL-EKL 181
L EKL
Sbjct: 108 TPDQLNEKL 116
Score = 52 (23.4 bits), Expect = 7.0e-07, Sum P(2) = 7.0e-07
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 50 HVLAVDDSLIDRKILENLLRVSSYQVTCV-DSGDKALEYLGLI 91
+VL VDDS RKI+ LR + V + ++GD +E L ++
Sbjct: 3 NVLIVDDSSTMRKIISRSLRQAGLPVDEIFEAGD-GIEGLNVL 44
>TIGR_CMR|GSU_2287 [details] [associations]
symbol:GSU_2287 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820
RefSeq:NP_953336.1 ProteinModelPortal:Q74AR5 GeneID:2686930
KEGG:gsu:GSU2287 PATRIC:22027433 OMA:HERDMEA
BioCyc:GSUL243231:GH27-2270-MONOMER Uniprot:Q74AR5
Length = 136
Score = 96 (38.9 bits), Expect = 9.5e-07, Sum P(2) = 9.5e-07
Identities = 27/85 (31%), Positives = 46/85 (54%)
Query: 111 ESRV--NLIMTDYCMPGMTGYDLLKRL-KVSSWKDVPVVVMSSENVPSRVTMCLEEGAEE 167
E+RV ++ D +P + G D+L+ + K +D+PVVV++S + + C + GA
Sbjct: 52 ENRVPPRFVLLDLKLPRVDGVDVLREMRKREETRDIPVVVLTSSDHERDMEACGKLGAAH 111
Query: 168 FLLKPVRLSDLEKLQPRLLKSPNRS 192
FL KP+ + ++ RL P RS
Sbjct: 112 FLQKPLDAGRMSEVLNRL-GIPARS 135
Score = 48 (22.0 bits), Expect = 9.5e-07, Sum P(2) = 9.5e-07
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 55 DDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDN 93
D+ + R++L+ +S V V G +AL YL + +N
Sbjct: 17 DEEFLTRRVLKKFPALSRIDV--VKDGVEALRYLTVAEN 53
>TIGR_CMR|SPO_0022 [details] [associations]
symbol:SPO_0022 "response regulator" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR001932 Pfam:PF00072 Pfam:PF07228 PROSITE:PS50110
SMART:SM00331 SMART:SM00448 GO:GO:0003824 GO:GO:0006355
GO:GO:0035556 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0008152
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
SUPFAM:SSF81606 RefSeq:YP_165295.1 ProteinModelPortal:Q5LWH9
GeneID:3194721 KEGG:sil:SPO0022 PATRIC:23373275
HOGENOM:HOG000291805 OMA:ERKWGDL ProtClustDB:CLSK933114
Uniprot:Q5LWH9
Length = 445
Score = 103 (41.3 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 20/65 (30%), Positives = 43/65 (66%)
Query: 115 NLIMTDYCMPGMTGYDLLKRLK-VSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPV 173
+L+++D+ MPGM+G D + + ++S + ++++S++ + V L+ GA++FL+KPV
Sbjct: 86 DLVLSDWVMPGMSGVDFCEAFRQLNSDRYCYFILLTSKSEKNEVAQGLDAGADDFLIKPV 145
Query: 174 RLSDL 178
+L
Sbjct: 146 SSDEL 150
Score = 73 (30.8 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALE 86
VL VDDS + R+IL + L+ ++V +SG++A+E
Sbjct: 43 VLVVDDSRLQRRILSSSLKKWGFEVIEAESGEEAME 78
>UNIPROTKB|P71403 [details] [associations]
symbol:cheY "Chemotaxis protein CheY homolog" species:85962
"Helicobacter pylori 26695" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0005737 GO:GO:0006355 GO:GO:0035556
GO:GO:0046872 GO:GO:0006935 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 EMBL:AE000511
GenomeReviews:AE000511_GR GO:GO:0001539 KO:K03413 EMBL:X81897
EMBL:U97567 EMBL:AF021090 PIR:C64653 RefSeq:NP_207858.1
RefSeq:YP_006934983.1 PDB:3GWG PDB:3H1E PDB:3H1F PDB:3H1G
PDBsum:3GWG PDBsum:3H1E PDBsum:3H1F PDBsum:3H1G
ProteinModelPortal:P71403 DIP:DIP-3256N MINT:MINT-160671
GeneID:13870261 GeneID:899603 KEGG:heo:C694_05515 KEGG:hpy:HP1067
PATRIC:20593473 OMA:DVLITDW ProtClustDB:CLSK872349
EvolutionaryTrace:P71403 Uniprot:P71403
Length = 124
Score = 113 (44.8 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 29/100 (29%), Positives = 54/100 (54%)
Query: 85 LEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTGYDLLKRLKVSS-WKDV 143
L LG D LE +++V ++TD+ MP M G DL+K+++ S +K++
Sbjct: 20 LSRLGYEDVLEAEHGVEAWEKLDANADTKV--LITDWNMPEMNGLDLVKKVRSDSRFKEI 77
Query: 144 PVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDL-EKLQ 182
P++++++E + V L+ G +++KP L EKL+
Sbjct: 78 PIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLE 117
>TAIR|locus:2093668 [details] [associations]
symbol:RR1 "response regulator 1" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0009736 "cytokinin mediated signaling pathway"
evidence=IGI;RCA;TAS] [GO:0009735 "response to cytokinin stimulus"
evidence=IGI;IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010380 "regulation of chlorophyll biosynthetic process"
evidence=IGI] [GO:0031537 "regulation of anthocyanin metabolic
process" evidence=IGI;RCA] [GO:0048367 "shoot system development"
evidence=IGI] [GO:0080022 "primary root development" evidence=IGI]
[GO:0006487 "protein N-linked glycosylation" evidence=RCA]
[GO:0006635 "fatty acid beta-oxidation" evidence=RCA] [GO:0010029
"regulation of seed germination" evidence=RCA] [GO:0010043
"response to zinc ion" evidence=RCA] [GO:0016558 "protein import
into peroxisome matrix" evidence=RCA] [GO:0048831 "regulation of
shoot system development" evidence=RCA] InterPro:IPR001005
InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0003682 GO:GO:0010380 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0009736 GO:GO:0080022 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0048367 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491 eggNOG:COG0745
GO:GO:0031537 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:AB016471
EMBL:AP001308 EMBL:AB028608 EMBL:AY056099 EMBL:AK316883
IPI:IPI00534841 IPI:IPI00547650 PIR:T51246 RefSeq:NP_566561.2
RefSeq:NP_850600.2 UniGene:At.183 UniGene:At.48672
ProteinModelPortal:Q940D0 SMR:Q940D0 IntAct:Q940D0 STRING:Q940D0
PaxDb:Q940D0 PRIDE:Q940D0 EnsemblPlants:AT3G16857.2 GeneID:820940
KEGG:ath:AT3G16857 GeneFarm:3920 TAIR:At3g16857
HOGENOM:HOG000034078 InParanoid:Q940D0 OMA:RTCLYEV PhylomeDB:Q940D0
ProtClustDB:CLSN2680844 Genevestigator:Q940D0 GermOnline:AT3G16857
Uniprot:Q940D0
Length = 690
Score = 116 (45.9 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 26/90 (28%), Positives = 54/90 (60%)
Query: 99 NASPSTLST-KKEESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRV 157
N + LS +K + +++++D MP M G+ LL+ + + D+PV++MS+++ S V
Sbjct: 67 NRAEMALSLLRKNKHGFDIVISDVHMPDMDGFKLLEHVGLEM--DLPVIMMSADDSKSVV 124
Query: 158 TMCLEEGAEEFLLKPVRLSDLEKLQPRLLK 187
+ GA ++L+KPVR+ L+ + +++
Sbjct: 125 LKGVTHGAVDYLIKPVRMEALKNIWQHVVR 154
Score = 61 (26.5 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYL 88
VL VDD ILE +LR Y+VT + + AL L
Sbjct: 39 VLVVDDDPTCLMILERMLRTCLYEVTKCNRAEMALSLL 76
>TIGR_CMR|GSU_1671 [details] [associations]
symbol:GSU_1671 "response regulator/GGDEF domain protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 Pfam:PF00990 GO:GO:0006355 GO:GO:0005622
EMBL:AE017180 GenomeReviews:AE017180_GR SUPFAM:SSF55073
GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160 SMART:SM00267
TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HSSP:P06143 HOGENOM:HOG000167205 RefSeq:NP_952722.1
ProteinModelPortal:Q74CK2 GeneID:2687445 KEGG:gsu:GSU1671
PATRIC:22026193 OMA:IADWLMP ProtClustDB:CLSK740862
BioCyc:GSUL243231:GH27-1671-MONOMER Uniprot:Q74CK2
Length = 322
Score = 99 (39.9 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 20/64 (31%), Positives = 40/64 (62%)
Query: 116 LIMTDYCMPGMTGYDLLKRLKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVR 174
++MTD+ MP M G +L + ++ S + +++++S++ + V LE GA+E+L+KP
Sbjct: 62 IVMTDWVMPEMDGLELCRAIRADCSGRYTYIILLTSQDSKNDVIAGLEAGADEYLVKPAH 121
Query: 175 LSDL 178
+L
Sbjct: 122 QVEL 125
Score = 72 (30.4 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 49 FHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALE 86
F +L VDD+ + R +LE L+ + Y V ++G +ALE
Sbjct: 16 FPILIVDDNRLLRTMLETSLKSAGYDVVMAENGKEALE 53
>TIGR_CMR|GSU_2219 [details] [associations]
symbol:GSU_2219 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 HSSP:P08402
RefSeq:NP_953268.1 ProteinModelPortal:Q74AY0 GeneID:2685652
KEGG:gsu:GSU2219 PATRIC:22027293 OMA:VMLTAKK ProtClustDB:CLSK828762
BioCyc:GSUL243231:GH27-2166-MONOMER Uniprot:Q74AY0
Length = 123
Score = 89 (36.4 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 20/73 (27%), Positives = 42/73 (57%)
Query: 115 NLIMTDYCMPGMTGYDLLKRLKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPV 173
+LI+ D +PGM G+++ + +K S + +PVV+++++ LE GA ++ KP
Sbjct: 49 DLIILDIMLPGMDGFEVCQMIKADPSTRHIPVVMLTAKKSTQDRDKGLEAGASAYVTKPF 108
Query: 174 RLSDLEKLQPRLL 186
+ + + ++ LL
Sbjct: 109 KSARIIEIIQGLL 121
Score = 46 (21.3 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYL 88
+L V+D K+ LL Y V V G AL+Y+
Sbjct: 6 ILIVEDEESLLKLESILLSSRGYAVAGVTDGKSALDYI 43
>TAIR|locus:2151206 [details] [associations]
symbol:PRR7 "pseudo-response regulator 7" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0007623 "circadian rhythm"
evidence=IMP;TAS] [GO:0010017 "red or far-red light signaling
pathway" evidence=IMP] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0009266 "response to temperature stimulus" evidence=IGI]
[GO:0003677 "DNA binding" evidence=IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0009639 "response to red or far red light" evidence=RCA]
[GO:0042752 "regulation of circadian rhythm" evidence=RCA]
[GO:0048574 "long-day photoperiodism, flowering" evidence=RCA]
InterPro:IPR001789 InterPro:IPR010402 Pfam:PF00072 Pfam:PF06203
PROSITE:PS50110 PROSITE:PS51017 SMART:SM00448 GO:GO:0005739
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0045892
GO:GO:0035556 GO:GO:0003677 GO:GO:0007623 GO:GO:0006351
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 EMBL:AB046954
EMBL:AL162973 EMBL:AY039943 EMBL:AY142560 IPI:IPI00520937
PIR:T48302 RefSeq:NP_568107.1 UniGene:At.20552
ProteinModelPortal:Q93WK5 SMR:Q93WK5 STRING:Q93WK5 PRIDE:Q93WK5
EnsemblPlants:AT5G02810.1 GeneID:831793 KEGG:ath:AT5G02810
GeneFarm:4348 TAIR:At5g02810 eggNOG:COG3437 HOGENOM:HOG000034018
InParanoid:Q93WK5 KO:K12129 OMA:HDERNIL PhylomeDB:Q93WK5
ProtClustDB:CLSN2917538 Genevestigator:Q93WK5 GermOnline:AT5G02810
GO:GO:0010017 GO:GO:0009266 Uniprot:Q93WK5
Length = 727
Score = 135 (52.6 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 41/137 (29%), Positives = 72/137 (52%)
Query: 65 ENLLRVSSYQVTCVDSGDKALEYL--GLIDNLENNS-NASPSTLSTKKEE---SRVNLIM 118
E L V + +V V++ D Y+ L+ N AS + K E + +++++
Sbjct: 70 ERFLHVRTIRVLLVENDD-CTRYIVTALLRNCSYEVVEASNGIQAWKVLEDLNNHIDIVL 128
Query: 119 TDYCMPGMTGYDLL-KRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSD 177
T+ MP ++G LL K L S +++PV++MSS + V CL +GA +FL+KP+R ++
Sbjct: 129 TEVIMPYLSGIGLLCKILNHKSRRNIPVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNE 188
Query: 178 LEKLQPRLLKSPNRSCG 194
L+ L + + S G
Sbjct: 189 LKILWQHVWRRCQSSSG 205
>UNIPROTKB|P0A5Z4 [details] [associations]
symbol:mtrA "DNA-binding response regulator MtrA"
species:1773 "Mycobacterium tuberculosis" [GO:0005886 "plasma
membrane" evidence=IDA] [GO:0006468 "protein phosphorylation"
evidence=IDA] [GO:0044117 "growth of symbiont in host"
evidence=IMP] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IDA] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0005886 GO:GO:0045893 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0006468 GO:GO:0044117 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622 EMBL:BX842582
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 EMBL:U01971 PIR:H70592 RefSeq:NP_217763.1
RefSeq:NP_337872.1 RefSeq:YP_006516722.1 PDB:2GWR PDB:3NHZ
PDBsum:2GWR PDBsum:3NHZ ProteinModelPortal:P0A5Z4 SMR:P0A5Z4
EnsemblBacteria:EBMYCT00000000173 EnsemblBacteria:EBMYCT00000070796
GeneID:13318068 GeneID:888743 GeneID:923067 KEGG:mtc:MT3344
KEGG:mtu:Rv3246c KEGG:mtv:RVBD_3246c PATRIC:18129108
TubercuList:Rv3246c KO:K07670 OMA:GFEPSFV ProtClustDB:CLSK872159
EvolutionaryTrace:P0A5Z4 Uniprot:P0A5Z4
Length = 228
Score = 117 (46.2 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 25/83 (30%), Positives = 51/83 (61%)
Query: 107 TKKEESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAE 166
T E R +L++ D +PGM G D+ + L+ S VP+V+++++ V + LE GA+
Sbjct: 43 TAVRELRPDLVLLDLMLPGMNGIDVCRVLRADS--GVPIVMLTAKTDTVDVVLGLESGAD 100
Query: 167 EFLLKPVRLSDL-EKLQPRLLKS 188
++++KP + +L +++ RL ++
Sbjct: 101 DYIMKPFKPKELVARVRARLRRN 123
Score = 42 (19.8 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKAL 85
+L VDD ++L +LR + + G +AL
Sbjct: 8 ILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQAL 42
>TIGR_CMR|GSU_2535 [details] [associations]
symbol:GSU_2535 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820
RefSeq:NP_953581.1 ProteinModelPortal:Q74A55 GeneID:2687797
KEGG:gsu:GSU2535 PATRIC:22027919 OMA:DLGCNVY
BioCyc:GSUL243231:GH27-2511-MONOMER Uniprot:Q74A55
Length = 147
Score = 110 (43.8 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 36/126 (28%), Positives = 62/126 (49%)
Query: 51 VLAVDDSLIDRKILE-NLLRVSSYQ-VTCVDSGDKALEYLGLIDNLENNSNASPSTLSTK 108
+L VDD +++E +L R+ Q V +D+G +AL+++ E TL
Sbjct: 9 ILLVDDDRGHARLIEKHLARMGGMQHVIWLDNGRRALDFI-----FEEGEFEGVKTL--- 60
Query: 109 KEESRVNLIMTDYCMPGMTGYDLLKRLKVSS-WKDVPVVVMSSENVPSRVTMCLEEGAEE 167
R L++ D MP + G +L RLK + VV++++ + P+ + C E G +
Sbjct: 61 ----RPCLVIADLNMPELGGVHVLSRLKGDERTSSIAVVILTTSDNPAEIEACHELGCDA 116
Query: 168 FLLKPV 173
FL KP+
Sbjct: 117 FLRKPM 122
>UNIPROTKB|Q8EEQ6 [details] [associations]
symbol:cheY "Chemotaxis signal transduction system response
regulator CheY" species:211586 "Shewanella oneidensis MR-1"
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 OMA:KLANYKF
HSSP:P06143 RefSeq:NP_717910.1 ProteinModelPortal:Q8EEQ6
GeneID:1170042 KEGG:son:SO_2318 PATRIC:23524259 Uniprot:Q8EEQ6
Length = 121
Score = 86 (35.3 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 20/67 (29%), Positives = 38/67 (56%)
Query: 107 TKKEESRVNLIMTDYCMPGMTGYDLLKRLKVSS-WKDVPVVVMSSENVPSRVTMCLEEGA 165
+K ++NLI++D MP M G LK +K +K PV+++++E ++ GA
Sbjct: 39 SKLNGDKINLIISDVNMPNMDGISFLKEVKKHPRYKFTPVIMLTTEAGRDKMEEGRMAGA 98
Query: 166 EEFLLKP 172
+ +++KP
Sbjct: 99 KAWVVKP 105
Score = 52 (23.4 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYL 88
+L VDDS R ++ LR + Y+V G AL L
Sbjct: 4 ILVVDDSASIRHVVSIALRGAGYEVIDACDGKDALSKL 41
>TIGR_CMR|SO_2318 [details] [associations]
symbol:SO_2318 "chemotaxis protein CheY" species:211586
"Shewanella oneidensis MR-1" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
OMA:KLANYKF HSSP:P06143 RefSeq:NP_717910.1
ProteinModelPortal:Q8EEQ6 GeneID:1170042 KEGG:son:SO_2318
PATRIC:23524259 Uniprot:Q8EEQ6
Length = 121
Score = 86 (35.3 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 20/67 (29%), Positives = 38/67 (56%)
Query: 107 TKKEESRVNLIMTDYCMPGMTGYDLLKRLKVSS-WKDVPVVVMSSENVPSRVTMCLEEGA 165
+K ++NLI++D MP M G LK +K +K PV+++++E ++ GA
Sbjct: 39 SKLNGDKINLIISDVNMPNMDGISFLKEVKKHPRYKFTPVIMLTTEAGRDKMEEGRMAGA 98
Query: 166 EEFLLKP 172
+ +++KP
Sbjct: 99 KAWVVKP 105
Score = 52 (23.4 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYL 88
+L VDDS R ++ LR + Y+V G AL L
Sbjct: 4 ILVVDDSASIRHVVSIALRGAGYEVIDACDGKDALSKL 41
>TIGR_CMR|SO_3209 [details] [associations]
symbol:SO_3209 "chemotaxis protein CheY" species:211586
"Shewanella oneidensis MR-1" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 OMA:GHYDFLV
HSSP:P06143 RefSeq:NP_718764.1 ProteinModelPortal:Q8ECD4 SMR:Q8ECD4
GeneID:1170902 KEGG:son:SO_3209 PATRIC:23526102
ProtClustDB:CLSK907053 Uniprot:Q8ECD4
Length = 127
Score = 109 (43.4 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 27/90 (30%), Positives = 50/90 (55%)
Query: 96 NNSNASP--STLSTKKEESRVNLIMTDYCMPGMTGYDLLKRLKVS-SWKDVPVVVMSSEN 152
NN+ + ST ++ + ++TD+ MPGM G DLLK ++ S K +PV+++++E
Sbjct: 30 NNTQEADDGSTALPMLQKGDFDFVVTDWNMPGMQGIDLLKAIRADDSLKHLPVLMVTAEA 89
Query: 153 VPSRVTMCLEEGAEEFLLKPVRLSDL-EKL 181
++ + G +++KP + L EKL
Sbjct: 90 KREQIIAAAQAGVNGYVVKPFTAATLKEKL 119
>TIGR_CMR|GSU_1285 [details] [associations]
symbol:GSU_1285 "sensory box sensor histidine
kinase/response regulator" species:243231 "Geobacter sulfurreducens
PCA" [GO:0000155 "phosphorelay sensor kinase activity"
evidence=ISS] [GO:0000156 "phosphorelay response regulator
activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR000014
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003661
InterPro:IPR004358 InterPro:IPR008207 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF02518 PRINTS:PR00344
PROSITE:PS50110 PROSITE:PS50112 SMART:SM00091 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 InterPro:IPR001610
GO:GO:0005524 GO:GO:0016020 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0023014
SMART:SM00086 TIGRFAMs:TIGR00229 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0000155 Gene3D:1.10.287.130
Gene3D:3.30.565.10 SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109
SUPFAM:SSF47226 InterPro:IPR013656 Pfam:PF08448 RefSeq:NP_952338.1
PDB:2R78 PDBsum:2R78 ProteinModelPortal:Q74DN1 SMR:Q74DN1
GeneID:2688111 KEGG:gsu:GSU1285 PATRIC:22025341
HOGENOM:HOG000144300 OMA:AHTNSER
BioCyc:GSUL243231:GH27-1253-MONOMER EvolutionaryTrace:Q74DN1
Uniprot:Q74DN1
Length = 772
Score = 103 (41.3 bits), Expect = 5.8e-06, Sum P(2) = 5.8e-06
Identities = 19/73 (26%), Positives = 43/73 (58%)
Query: 115 NLIMTDYCMPGMTGYDLLKRLKV---SSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLK 171
+L++ D MP M G++ ++ ++ + +P++ +++ + +CLE GA+++L K
Sbjct: 591 DLVLMDVQMPVMDGFEAMRAIRAGEAAGGARLPIIALTARALAGDRELCLEAGADDYLAK 650
Query: 172 PVRLSDLEKLQPR 184
PV S+L ++ R
Sbjct: 651 PVNFSELRRVISR 663
Score = 72 (30.4 bits), Expect = 5.8e-06, Sum P(2) = 5.8e-06
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLG 89
VL VDDS + RK++ LL ++VT G +AL +G
Sbjct: 548 VLLVDDSAVSRKVVSLLLESDGHRVTFAGDGVEALAAIG 586
>UNIPROTKB|Q0BZW4 [details] [associations]
symbol:pleD "Response regulator PleD" species:228405
"Hyphomonas neptunium ATCC 15444" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0007165 "signal transduction"
evidence=ISS] InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 Pfam:PF00990 GO:GO:0006355
GO:GO:0005622 GO:GO:0004871 SUPFAM:SSF55073 GO:GO:0016849
GO:GO:0009190 InterPro:IPR000160 SMART:SM00267 TIGRFAMs:TIGR00254
PROSITE:PS50887 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG3706 EMBL:CP000158 GenomeReviews:CP000158_GR KO:K02488
HOGENOM:HOG000167204 RefSeq:YP_760979.1 ProteinModelPortal:Q0BZW4
STRING:Q0BZW4 GeneID:4287816 KEGG:hne:HNE_2284 PATRIC:32217411
OMA:APRTINA BioCyc:HNEP228405:GI69-2306-MONOMER Uniprot:Q0BZW4
Length = 455
Score = 109 (43.4 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
Identities = 28/74 (37%), Positives = 42/74 (56%)
Query: 102 PSTLSTKKEESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKD-VPVVVMSS-ENVPSRVTM 159
P L + E+ +I+ D MPGM GY++ +RLK +PVV++++ + RV
Sbjct: 36 PQALEVAQRENP-EIILLDVMMPGMDGYEVCQRLKADPTTSYIPVVMVTALSEMEDRVKG 94
Query: 160 CLEEGAEEFLLKPV 173
L GAE+FL KPV
Sbjct: 95 -LAAGAEDFLTKPV 107
Score = 59 (25.8 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 48 TFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALE 86
T +L VDD +R++L+ L + V ++G +ALE
Sbjct: 2 TARILVVDDIEANRRLLQAKLEAQYHTVLMAENGPQALE 40
>TAIR|locus:2040194 [details] [associations]
symbol:RR12 "response regulator 12" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009736
"cytokinin mediated signaling pathway" evidence=IGI;TAS]
[GO:0009735 "response to cytokinin stimulus" evidence=IGI]
[GO:0010380 "regulation of chlorophyll biosynthetic process"
evidence=IGI] [GO:0031537 "regulation of anthocyanin metabolic
process" evidence=IGI] [GO:0048367 "shoot system development"
evidence=IGI] [GO:0080022 "primary root development" evidence=IGI]
InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0003682 GO:GO:0010380
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009736 GO:GO:0080022
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0048367
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 KO:K14491 eggNOG:COG2204 HOGENOM:HOG000238840
GO:GO:0031537 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:BE522295
IPI:IPI00541861 IPI:IPI01019479 RefSeq:NP_180090.6 UniGene:At.19775
ProteinModelPortal:P62598 SMR:P62598 IntAct:P62598 STRING:P62598
GeneID:817056 KEGG:ath:AT2G25180 GeneFarm:3926 TAIR:At2g25180
InParanoid:P62598 OMA:QQAIMAN ArrayExpress:P62598
Genevestigator:P62598 GermOnline:AT2G25180 Uniprot:P62598
Length = 596
Score = 129 (50.5 bits), Expect = 7.6e-06, P = 7.6e-06
Identities = 33/120 (27%), Positives = 68/120 (56%)
Query: 74 QVTCVDSGDKALEYL-GLIDNLE---NNSNASPSTLSTKKE-ESRVNLIMTDYCMPGMTG 128
+V VD L+ L L+ + + +N + L +E +++ +L+++D MP M G
Sbjct: 18 RVLAVDDDQTCLKILESLLRHCQYHVTTTNQAQKALELLRENKNKFDLVISDVDMPDMDG 77
Query: 129 YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKS 188
+ LL+ + + D+PV+++S+ + P V + GA ++LLKPVR+ +L+ + +++S
Sbjct: 78 FKLLELVGLEM--DLPVIMLSAHSDPKYVMKGVTHGACDYLLKPVRIEELKNIWQHVVRS 135
>UNIPROTKB|Q8EF67 [details] [associations]
symbol:cheY "Chemotaxis signal transduction system response
regulator CheY" species:211586 "Shewanella oneidensis MR-1"
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P06143
OMA:FDVTEAC RefSeq:NP_717723.1 ProteinModelPortal:Q8EF67
GeneID:1169863 KEGG:son:SO_2120 PATRIC:23523858
ProtClustDB:CLSK906601 Uniprot:Q8EF67
Length = 121
Score = 76 (31.8 bits), Expect = 8.6e-06, Sum P(2) = 8.6e-06
Identities = 18/61 (29%), Positives = 34/61 (55%)
Query: 113 RVNLIMTDYCMPGMTGYDLLKRLK-VSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLK 171
R + I+TD MP M G L+K L+ +S++ P++++++E GA +++K
Sbjct: 46 RFDFILTDQNMPRMDGLTLIKSLRGMSAFMRTPIIMLTTEAGDDMKAQGKAVGATGWMVK 105
Query: 172 P 172
P
Sbjct: 106 P 106
Score = 71 (30.1 bits), Expect = 8.6e-06, Sum P(2) = 8.6e-06
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALE 86
+L VDDS R+++E L+ ++YQVT G +AL+
Sbjct: 5 ILIVDDSAAIRQMVEATLKSANYQVTLAKDGREALD 40
>TIGR_CMR|SO_2120 [details] [associations]
symbol:SO_2120 "chemotaxis protein CheY" species:211586
"Shewanella oneidensis MR-1" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
HSSP:P06143 OMA:FDVTEAC RefSeq:NP_717723.1
ProteinModelPortal:Q8EF67 GeneID:1169863 KEGG:son:SO_2120
PATRIC:23523858 ProtClustDB:CLSK906601 Uniprot:Q8EF67
Length = 121
Score = 76 (31.8 bits), Expect = 8.6e-06, Sum P(2) = 8.6e-06
Identities = 18/61 (29%), Positives = 34/61 (55%)
Query: 113 RVNLIMTDYCMPGMTGYDLLKRLK-VSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLK 171
R + I+TD MP M G L+K L+ +S++ P++++++E GA +++K
Sbjct: 46 RFDFILTDQNMPRMDGLTLIKSLRGMSAFMRTPIIMLTTEAGDDMKAQGKAVGATGWMVK 105
Query: 172 P 172
P
Sbjct: 106 P 106
Score = 71 (30.1 bits), Expect = 8.6e-06, Sum P(2) = 8.6e-06
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALE 86
+L VDDS R+++E L+ ++YQVT G +AL+
Sbjct: 5 ILIVDDSAAIRQMVEATLKSANYQVTLAKDGREALD 40
>UNIPROTKB|Q48GG3 [details] [associations]
symbol:cheY2 "Chemotaxis protein CheY" species:264730
"Pseudomonas syringae pv. phaseolicola 1448A" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 GO:GO:0005622
GO:GO:0006935 GO:GO:0004871 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:CP000058 GenomeReviews:CP000058_GR
eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413 RefSeq:YP_275520.1
ProteinModelPortal:Q48GG3 SMR:Q48GG3 STRING:Q48GG3 GeneID:3558182
KEGG:psp:PSPPH_3362 PATRIC:19976130 OMA:GHYDFLV
ProtClustDB:CLSK642753 Uniprot:Q48GG3
Length = 124
Score = 105 (42.0 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 25/90 (27%), Positives = 48/90 (53%)
Query: 96 NNSNASPS-TLSTKKEESRVNLIMTDYCMPGMTGYDLLKRLKVSS-WKDVPVVVMSSENV 153
N S A T + + ++TD+ MPGMTG DLL++++ K +PV+++++E
Sbjct: 27 NTSEADDGLTALPMLQSGAFDFLVTDWNMPGMTGIDLLRQVRADERLKSLPVLMVTAEAK 86
Query: 154 PSRVTMCLEEGAEEFLLKPVRLSDL-EKLQ 182
++ + G +++KP L EK++
Sbjct: 87 REQIIEAAQAGVNGYVVKPFTAQALKEKIE 116
>TAIR|locus:2116587 [details] [associations]
symbol:RR10 "response regulator 10" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0009736 "cytokinin mediated signaling pathway"
evidence=IGI;RCA;TAS] [GO:0009735 "response to cytokinin stimulus"
evidence=IGI] [GO:0010380 "regulation of chlorophyll biosynthetic
process" evidence=IGI] [GO:0031537 "regulation of anthocyanin
metabolic process" evidence=IGI;RCA] [GO:0048367 "shoot system
development" evidence=IGI] [GO:0080022 "primary root development"
evidence=IGI] [GO:0010029 "regulation of seed germination"
evidence=RCA] [GO:0048831 "regulation of shoot system development"
evidence=RCA] InterPro:IPR001005 InterPro:IPR001789
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110
SMART:SM00448 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0003682
GO:GO:0010380 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009736
GO:GO:0080022 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0048367 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491 EMBL:AJ005195
EMBL:AL021636 EMBL:AL161580 EMBL:BT003158 IPI:IPI00544491
PIR:T04653 RefSeq:NP_194920.1 UniGene:At.122 PDB:1IRZ PDBsum:1IRZ
ProteinModelPortal:O49397 SMR:O49397 IntAct:O49397 STRING:O49397
PRIDE:O49397 EnsemblPlants:AT4G31920.1 GeneID:829322
KEGG:ath:AT4G31920 GeneFarm:2450 TAIR:At4g31920 eggNOG:COG2204
HOGENOM:HOG000238840 InParanoid:O49397 OMA:THELHNK PhylomeDB:O49397
ProtClustDB:CLSN2685991 EvolutionaryTrace:O49397
Genevestigator:O49397 GermOnline:AT4G31920 GO:GO:0031537
InterPro:IPR017053 PIRSF:PIRSF036392 Uniprot:O49397
Length = 552
Score = 126 (49.4 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 32/119 (26%), Positives = 67/119 (56%)
Query: 74 QVTCVDSGDKALEYLG-LIDNLE---NNSNASPSTLSTKKE-ESRVNLIMTDYCMPGMTG 128
+V VD L L L+ + +N + + L +E +++ +L+++D MP M G
Sbjct: 18 RVLAVDDDQTCLRILQTLLQRCQYHVTTTNQAQTALELLRENKNKFDLVISDVDMPDMDG 77
Query: 129 YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLK 187
+ LL+ + + D+PV+++S+ + P V ++ GA ++LLKPVR+ +L+ + +++
Sbjct: 78 FKLLELVGLEM--DLPVIMLSAHSDPKYVMKGVKHGACDYLLKPVRIEELKNIWQHVVR 134
>TIGR_CMR|GSU_1879 [details] [associations]
symbol:GSU_1879 "DNA-binding response regulator"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_952928.1 ProteinModelPortal:Q74BZ8 GeneID:2688525
KEGG:gsu:GSU1879 PATRIC:22026623 OMA:SHVESGE ProtClustDB:CLSK828616
BioCyc:GSUL243231:GH27-1891-MONOMER Uniprot:Q74BZ8
Length = 238
Score = 92 (37.4 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 22/78 (28%), Positives = 50/78 (64%)
Query: 113 RVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSE-NVPSRVTMCLEEGAEEFLLK 171
R LI+ D +PG+ G+ + +R++ + + VP++++++ + R+T L+ GA+++L K
Sbjct: 49 RFALIILDVMLPGIDGFTVCERVRATDAR-VPILILTARADDGDRITG-LDRGADDYLTK 106
Query: 172 PVRLSD-LEKLQPRLLKS 188
P L++ L +++ L +S
Sbjct: 107 PFNLNEFLLRVRGMLRRS 124
Score = 66 (28.3 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 50 HVLAVDDSL-IDRKILENLLRVSSYQVTCVDSGDKALEYL 88
H+L V+D + + R I NL + Y+V+ V+SG+ ALE L
Sbjct: 7 HILLVEDEIHLARGICFNL-EMEGYRVSHVESGEAALERL 45
>TIGR_CMR|SPO_1953 [details] [associations]
symbol:SPO_1953 "phosphate regulon transcriptional
regulatory protein PhoB" species:246200 "Ruegeria pomeroyi DSS-3"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0006817 "phosphate ion transport" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 InterPro:IPR011879
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0006817 HOGENOM:HOG000034819 KO:K07657
TIGRFAMs:TIGR02154 RefSeq:YP_167188.1 ProteinModelPortal:Q5LS17
GeneID:3193549 KEGG:sil:SPO1953 PATRIC:23377237 OMA:STLMEKP
ProtClustDB:CLSK933701 Uniprot:Q5LS17
Length = 229
Score = 101 (40.6 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 19/70 (27%), Positives = 43/70 (61%)
Query: 110 EESRVNLIMTDYCMPGMTGYDLLKRLKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAEEF 168
+E ++I+ D+ MP ++G ++ +RLK + +PV+++S+ + LE GA+++
Sbjct: 46 DEDTPDIIVLDWMMPNLSGIEVCRRLKTRPETRSIPVIMLSARSEEVDKVRGLETGADDY 105
Query: 169 LLKPVRLSDL 178
++KP + +L
Sbjct: 106 VVKPYSVVEL 115
Score = 54 (24.1 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKAL 85
VL V+D + R++L L ++V ++G++A+
Sbjct: 8 VLVVEDEMAQREVLAYNLEAEGFRVIRAENGEEAM 42
>TIGR_CMR|GSU_1038 [details] [associations]
symbol:GSU_1038 "sensory box histidine kinase/response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000155 "phosphorelay sensor kinase activity" evidence=ISS]
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR000014 InterPro:IPR001789
InterPro:IPR003594 InterPro:IPR003661 InterPro:IPR004358
InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512 Pfam:PF02518
PRINTS:PR00344 PROSITE:PS50110 SMART:SM00091 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 GO:GO:0005524
GO:GO:0016020 GO:GO:0006355 GO:GO:0035556 GO:GO:0005622
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0023014 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 InterPro:IPR013656 Pfam:PF08448
RefSeq:NP_952091.1 ProteinModelPortal:Q74EC5 GeneID:2688721
KEGG:gsu:GSU1038 PATRIC:22024844 OMA:ECALENA
BioCyc:GSUL243231:GH27-1025-MONOMER Uniprot:Q74EC5
Length = 513
Score = 89 (36.4 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 20/75 (26%), Positives = 40/75 (53%)
Query: 115 NLIMTDYCMPGMTGYDLLKRLK-VSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPV 173
+L++ D MP M GY ++ + + VP+++M++ + + + + GA +F+ KPV
Sbjct: 66 DLVLLDIMMPVMDGYGACAAIRGLPGGEHVPIIIMTALDDANSIGRAFDAGATDFIEKPV 125
Query: 174 RLSDLEKLQPRLLKS 188
L P LL++
Sbjct: 126 NWMLLNHRLPYLLRA 140
Score = 79 (32.9 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALE 86
+L VDD + RK+L NL +S Y+V + G +A+E
Sbjct: 23 ILLVDDDAVTRKMLRNLFTLSGYRVADAEDGARAVE 58
>TIGR_CMR|DET_1540 [details] [associations]
symbol:DET_1540 "DNA-binding response regulator"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034815 RefSeq:YP_182238.1 ProteinModelPortal:Q3Z6B1
GeneID:3229185 KEGG:det:DET1540 PATRIC:21610100 OMA:ARIRCIL
ProtClustDB:CLSK741608 BioCyc:DETH243164:GJNF-1541-MONOMER
Uniprot:Q3Z6B1
Length = 225
Score = 118 (46.6 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 24/69 (34%), Positives = 42/69 (60%)
Query: 110 EESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFL 169
EE R NL++ D +P M G ++LK ++ + D P+++++ + S V LE GA E++
Sbjct: 43 EEQRPNLVILDLSLPDMDGLEVLKDARL--FCDTPIIILTVRSEESDVVEALELGANEYI 100
Query: 170 LKPVRLSDL 178
+KP R +L
Sbjct: 101 IKPFRQMEL 109
>TIGR_CMR|GSU_2574 [details] [associations]
symbol:GSU_2574 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR003607 InterPro:IPR006674 Pfam:PF00072 Pfam:PF01966
PROSITE:PS50110 SMART:SM00448 SMART:SM00471 GO:GO:0006355
GO:GO:0035556 GO:GO:0046872 GO:GO:0008152 GO:GO:0005622
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0008081
Gene3D:1.10.3210.10 HOGENOM:HOG000266481 RefSeq:NP_953620.1
ProteinModelPortal:Q74A17 GeneID:2686365 KEGG:gsu:GSU2574
PATRIC:22028001 KO:K07814 OMA:HTRRISE ProtClustDB:CLSK746108
BioCyc:GSUL243231:GH27-2551-MONOMER Uniprot:Q74A17
Length = 368
Score = 120 (47.3 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 38/121 (31%), Positives = 58/121 (47%)
Query: 70 VSSYQVTCVDSGDKALEYLG-LIDNLENNSNASPS--TLSTKKEESRVNLIMTDYCMPGM 126
+ S V VD + E L ++D L A L + S ++LI+ D MP +
Sbjct: 2 LDSISVLVVDDEEMNRELLSVMLDGLATPITAQNGLEALRVLDKNSAIDLILLDLEMPEL 61
Query: 127 TGYDLLKRLKVSS-WKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRL 185
G+ L LK W D+PV+V+++ VT L GA +FL KP D E+L+ R+
Sbjct: 62 NGFATLATLKKHPLWCDIPVIVLTASK--DEVTRTLRLGANDFLAKPY---DTEELRLRV 116
Query: 186 L 186
+
Sbjct: 117 M 117
>TIGR_CMR|APH_0551 [details] [associations]
symbol:APH_0551 "response regulator/GGDEF domain protein"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 Pfam:PF00990 GO:GO:0006355 GO:GO:0005622
EMBL:CP000235 GenomeReviews:CP000235_GR SUPFAM:SSF55073
GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160 SMART:SM00267
TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG3706 KO:K02488 HOGENOM:HOG000167204
ProtClustDB:PRK09581 RefSeq:YP_505143.1 ProteinModelPortal:Q2GKF8
STRING:Q2GKF8 GeneID:3930248 KEGG:aph:APH_0551 PATRIC:20949762
OMA:VERENDF BioCyc:APHA212042:GHPM-575-MONOMER Uniprot:Q2GKF8
Length = 456
Score = 111 (44.1 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 23/66 (34%), Positives = 42/66 (63%)
Query: 110 EESRVNLIMTDYCMPGMTGYDLLKRLKVS-SWKDVPVVVMSS-ENVPSRVTMCLEEGAEE 167
EE + +LI+ D MPGM GY+ K ++ + + +P+V++++ +N S L GA++
Sbjct: 43 EEHQPDLILLDVMMPGMDGYETCKNMRTNPAIAYIPIVMVTALDNTTSNRVNGLSAGADD 102
Query: 168 FLLKPV 173
FL+KP+
Sbjct: 103 FLIKPI 108
Score = 48 (22.0 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 48 TFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKAL 85
T +L VDD + K+L+ L Y V SG +A+
Sbjct: 2 TAKILIVDDLPSNIKLLQAKLTAEYYTVITATSGPEAI 39
>UNIPROTKB|Q9KRN4 [details] [associations]
symbol:VC1602 "Chemotaxis protein CheV" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002545 Pfam:PF00072
Pfam:PF01584 PROSITE:PS50110 PROSITE:PS50851 SMART:SM00260
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 GenomeReviews:AE003852_GR
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 SUPFAM:SSF50341 KO:K03415
OMA:AKWIGIV InterPro:IPR024181 PIRSF:PIRSF002867 HSSP:P04042
EMBL:AE004237 PIR:A82180 RefSeq:NP_231242.1
ProteinModelPortal:Q9KRN4 DNASU:2613858 GeneID:2613858
KEGG:vch:VC1602 PATRIC:20082263 ProtClustDB:CLSK874446
Uniprot:Q9KRN4
Length = 328
Score = 119 (46.9 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 35/123 (28%), Positives = 56/123 (45%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKE 110
++ VDDS R ++++ L + Y + G +A E L + N S L
Sbjct: 198 IMVVDDSAFIRSLIQDTLSSAGYNIIACKDGGEAHEKLMELKQAAKEENVPVSEL----- 252
Query: 111 ESRVNLIMTDYCMPGMTGYDLLKRLKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAEEFL 169
++ ++TD MP M G L+KRL+ S+ +P+V+ SS L GA + L
Sbjct: 253 ---IDAVVTDVEMPRMDGMHLIKRLRDDDSYSSMPIVMFSSLMSDDNRAKALALGANDTL 309
Query: 170 LKP 172
KP
Sbjct: 310 TKP 312
>TIGR_CMR|VC_1602 [details] [associations]
symbol:VC_1602 "chemotaxis protein CheV" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002545 Pfam:PF00072 Pfam:PF01584
PROSITE:PS50110 PROSITE:PS50851 SMART:SM00260 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GenomeReviews:AE003852_GR GO:GO:0005622
GO:GO:0006935 GO:GO:0004871 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 SUPFAM:SSF50341 KO:K03415 OMA:AKWIGIV
InterPro:IPR024181 PIRSF:PIRSF002867 HSSP:P04042 EMBL:AE004237
PIR:A82180 RefSeq:NP_231242.1 ProteinModelPortal:Q9KRN4
DNASU:2613858 GeneID:2613858 KEGG:vch:VC1602 PATRIC:20082263
ProtClustDB:CLSK874446 Uniprot:Q9KRN4
Length = 328
Score = 119 (46.9 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 35/123 (28%), Positives = 56/123 (45%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKE 110
++ VDDS R ++++ L + Y + G +A E L + N S L
Sbjct: 198 IMVVDDSAFIRSLIQDTLSSAGYNIIACKDGGEAHEKLMELKQAAKEENVPVSEL----- 252
Query: 111 ESRVNLIMTDYCMPGMTGYDLLKRLKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAEEFL 169
++ ++TD MP M G L+KRL+ S+ +P+V+ SS L GA + L
Sbjct: 253 ---IDAVVTDVEMPRMDGMHLIKRLRDDDSYSSMPIVMFSSLMSDDNRAKALALGANDTL 309
Query: 170 LKP 172
KP
Sbjct: 310 TKP 312
>TIGR_CMR|DET_0135 [details] [associations]
symbol:DET_0135 "DNA-binding response regulator"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034819 KO:K02483
RefSeq:YP_180885.1 ProteinModelPortal:Q3ZA64 STRING:Q3ZA64
GeneID:3230499 KEGG:det:DET0135 PATRIC:21607359 OMA:CYNLAKE
ProtClustDB:CLSK837603 BioCyc:DETH243164:GJNF-135-MONOMER
Uniprot:Q3ZA64
Length = 230
Score = 96 (38.9 bits), Expect = 5.8e-05, Sum P(2) = 5.8e-05
Identities = 20/73 (27%), Positives = 43/73 (58%)
Query: 115 NLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVR 174
+L++ D +PGM G++L + ++ S VP++++++ + + LE GA+++L KP
Sbjct: 49 SLVILDVMLPGMDGFELCRLIRAES--SVPILMLTARSSETDKVNGLEVGADDYLSKPFG 106
Query: 175 LSDLEKLQPRLLK 187
+ +L LL+
Sbjct: 107 MKELLARMRALLR 119
Score = 55 (24.4 bits), Expect = 5.8e-05, Sum P(2) = 5.8e-05
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKAL 85
+L V+D R++L L YQ+ C + G KAL
Sbjct: 6 ILVVEDDATLRELLCYNLAKEGYQLECAEDGLKAL 40
>UNIPROTKB|Q9KS16 [details] [associations]
symbol:VC_1445 "Sensor histidine kinase/response regulator"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000155 "phosphorelay sensor kinase activity" evidence=ISS]
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0023014 "signal transduction by phosphorylation"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 InterPro:IPR003594
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF02518 PRINTS:PR00344
PROSITE:PS50110 SMART:SM00387 SMART:SM00388 SMART:SM00448
InterPro:IPR005467 GO:GO:0005524 GO:GO:0016020 GO:GO:0006355
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P39928 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 PIR:E82198 RefSeq:NP_231088.1
ProteinModelPortal:Q9KS16 DNASU:2614077 GeneID:2614077
KEGG:vch:VC1445 PATRIC:20081952 OMA:GTAKDIS ProtClustDB:CLSK874379
Uniprot:Q9KS16
Length = 572
Score = 95 (38.5 bits), Expect = 6.5e-05, Sum P(2) = 6.5e-05
Identities = 21/78 (26%), Positives = 42/78 (53%)
Query: 110 EESRV-NLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEF 168
E++ V +L++ D MP M G K L+ ++P++ +++ S C++ G +
Sbjct: 494 EKNHVFDLVLMDISMPIMDGIAATKILR-DKHIEIPIIALTAHTAGSDKQNCIDAGMNDI 552
Query: 169 LLKPVRLSDLEKLQPRLL 186
+LKP+R D+ ++ R L
Sbjct: 553 VLKPIRSKDIMEVVKRFL 570
Score = 68 (29.0 bits), Expect = 6.5e-05, Sum P(2) = 6.5e-05
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 50 HVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYL 88
H+L V+D+ ++ +++ LL Y VT ++G +A+E L
Sbjct: 455 HILVVEDTKTNQMVIQLLLNKLGYDVTIAENGLQAVELL 493
>TIGR_CMR|VC_1445 [details] [associations]
symbol:VC_1445 "sensor histidine kinase/response regulator"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000155
"phosphorelay sensor kinase activity" evidence=ISS] [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003661
InterPro:IPR004358 InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512
Pfam:PF02518 PRINTS:PR00344 PROSITE:PS50110 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 GO:GO:0005524
GO:GO:0016020 GO:GO:0006355 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HSSP:P39928 GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 PIR:E82198
RefSeq:NP_231088.1 ProteinModelPortal:Q9KS16 DNASU:2614077
GeneID:2614077 KEGG:vch:VC1445 PATRIC:20081952 OMA:GTAKDIS
ProtClustDB:CLSK874379 Uniprot:Q9KS16
Length = 572
Score = 95 (38.5 bits), Expect = 6.5e-05, Sum P(2) = 6.5e-05
Identities = 21/78 (26%), Positives = 42/78 (53%)
Query: 110 EESRV-NLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEF 168
E++ V +L++ D MP M G K L+ ++P++ +++ S C++ G +
Sbjct: 494 EKNHVFDLVLMDISMPIMDGIAATKILR-DKHIEIPIIALTAHTAGSDKQNCIDAGMNDI 552
Query: 169 LLKPVRLSDLEKLQPRLL 186
+LKP+R D+ ++ R L
Sbjct: 553 VLKPIRSKDIMEVVKRFL 570
Score = 68 (29.0 bits), Expect = 6.5e-05, Sum P(2) = 6.5e-05
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 50 HVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYL 88
H+L V+D+ ++ +++ LL Y VT ++G +A+E L
Sbjct: 455 HILVVEDTKTNQMVIQLLLNKLGYDVTIAENGLQAVELL 493
>TIGR_CMR|GSU_2946 [details] [associations]
symbol:GSU_2946 "DNA-binding heavy metal response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 InterPro:IPR006291
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034815 KO:K07665 TIGRFAMs:TIGR01387
HSSP:Q9WYN0 RefSeq:NP_953988.1 ProteinModelPortal:Q748Q5
GeneID:2688389 KEGG:gsu:GSU2946 PATRIC:22028753 OMA:GYMLEIP
ProtClustDB:CLSK743174 BioCyc:GSUL243231:GH27-2897-MONOMER
Uniprot:Q748Q5
Length = 223
Score = 114 (45.2 bits), Expect = 7.3e-05, P = 7.3e-05
Identities = 36/124 (29%), Positives = 67/124 (54%)
Query: 74 QVTCVDSGDKALEYL--GLIDN--LENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTGY 129
+V ++ KA YL G +N + + + L + E+ +LI+ D +PG G+
Sbjct: 2 RVLIIEDEKKAAAYLQKGFAENGFTADTAASGDDGLHLARTEN-YDLIILDIMLPGRDGW 60
Query: 130 DLLKRLKVSSWKDVPVVVMSSEN-VPSRVTMCLEEGAEEFLLKPVRLSDL-EKLQPRLLK 187
++L+ L+ +VPV+ +S+ + V RV LE GA+++L+KP S+L + + L +
Sbjct: 61 EVLEELRKEG-SEVPVIYLSARDAVHDRVRG-LELGADDYLVKPFAFSELLARARTILRR 118
Query: 188 SPNR 191
P+R
Sbjct: 119 GPSR 122
>UNIPROTKB|Q74AX6 [details] [associations]
symbol:cheY40H-1 "Response receiver CheY associated with
MCPs of class 40H" species:243231 "Geobacter sulfurreducens PCA"
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P06143
RefSeq:NP_953272.2 ProteinModelPortal:Q74AX6 GeneID:2685646
KEGG:gsu:GSU2223 PATRIC:22027301 OMA:GANEYLV ProtClustDB:CLSK828765
BioCyc:GSUL243231:GH27-2170-MONOMER Uniprot:Q74AX6
Length = 121
Score = 98 (39.6 bits), Expect = 7.3e-05, P = 7.3e-05
Identities = 24/70 (34%), Positives = 42/70 (60%)
Query: 113 RVNLIMTDYCMPGMTGYDLLKRLKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLK 171
R++LI+TD MP + G +L+ ++ S +++ +P+ ++S+E L GA E+L+K
Sbjct: 46 RLDLIITDINMPDINGLELVSFVRTSDNYRHIPLFIISTEGSERDREKGLSLGANEYLVK 105
Query: 172 P---VRLSDL 178
P RL DL
Sbjct: 106 PFDPARLQDL 115
>TIGR_CMR|GSU_2223 [details] [associations]
symbol:GSU_2223 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
HSSP:P06143 RefSeq:NP_953272.2 ProteinModelPortal:Q74AX6
GeneID:2685646 KEGG:gsu:GSU2223 PATRIC:22027301 OMA:GANEYLV
ProtClustDB:CLSK828765 BioCyc:GSUL243231:GH27-2170-MONOMER
Uniprot:Q74AX6
Length = 121
Score = 98 (39.6 bits), Expect = 7.3e-05, P = 7.3e-05
Identities = 24/70 (34%), Positives = 42/70 (60%)
Query: 113 RVNLIMTDYCMPGMTGYDLLKRLKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLK 171
R++LI+TD MP + G +L+ ++ S +++ +P+ ++S+E L GA E+L+K
Sbjct: 46 RLDLIITDINMPDINGLELVSFVRTSDNYRHIPLFIISTEGSERDREKGLSLGANEYLVK 105
Query: 172 P---VRLSDL 178
P RL DL
Sbjct: 106 PFDPARLQDL 115
>UNIPROTKB|Q1D8M8 [details] [associations]
symbol:phoP2 "DNA-binding response regulator PhoP2"
species:246197 "Myxococcus xanthus DK 1622" [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
GO:GO:0005622 EMBL:CP000113 GenomeReviews:CP000113_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 SUPFAM:SSF46894 RefSeq:YP_630995.1
ProteinModelPortal:Q1D8M8 IntAct:Q1D8M8 STRING:Q1D8M8
GeneID:4100623 KEGG:mxa:MXAN_2778 PATRIC:22648097 OMA:FSIHTIR
ProtClustDB:CLSK756494 BioCyc:MXAN246197:GIWU-2755-MONOMER
Uniprot:Q1D8M8
Length = 238
Score = 114 (45.2 bits), Expect = 8.9e-05, P = 8.9e-05
Identities = 30/102 (29%), Positives = 55/102 (53%)
Query: 82 DKALEYLGLIDNLENNSNA---SPSTLSTKK--EESRVNLIMTDYCMPGMTGYDLLKRLK 136
D A +GL DNL + +PST ++ +E +L++ D +PG GY +RL+
Sbjct: 19 DDAHLRVGLRDNLLDEGYLVAEAPSTRDAERLLQERAFDLLILDVMLPGEDGYSFCRRLR 78
Query: 137 VSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDL 178
K + V+++++ ++ + E GA+++L KP RL +L
Sbjct: 79 TQGNKSM-VLMLTARSLEDDILRGFEVGAQDYLTKPYRLREL 119
>TIGR_CMR|BA_0996 [details] [associations]
symbol:BA_0996 "sensor histidine kinase/response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000155
"phosphorelay sensor kinase activity" evidence=ISS] [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR003018 InterPro:IPR001789 InterPro:IPR003594
InterPro:IPR003660 InterPro:IPR003661 InterPro:IPR004358
InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512 Pfam:PF00672
Pfam:PF02518 Pfam:PF13185 PRINTS:PR00344 PROSITE:PS50110
PROSITE:PS50885 SMART:SM00065 SMART:SM00304 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 GO:GO:0016021
GO:GO:0005524 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0005622
GO:GO:0023014 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 KO:K03407
HSSP:P52934 RefSeq:NP_843497.1 RefSeq:YP_017624.1
RefSeq:YP_027206.1 ProteinModelPortal:Q81U88 DNASU:1088076
EnsemblBacteria:EBBACT00000011936 EnsemblBacteria:EBBACT00000016656
EnsemblBacteria:EBBACT00000023286 GeneID:1088076 GeneID:2814798
GeneID:2849014 KEGG:ban:BA_0996 KEGG:bar:GBAA_0996 KEGG:bat:BAS0932
HOGENOM:HOG000084747 OMA:TNNVFQE ProtClustDB:CLSK916050
BioCyc:BANT260799:GJAJ-1010-MONOMER
BioCyc:BANT261594:GJ7F-1055-MONOMER InterPro:IPR007891 Pfam:PF05227
Uniprot:Q81U88
Length = 896
Score = 122 (48.0 bits), Expect = 9.0e-05, P = 9.0e-05
Identities = 20/75 (26%), Positives = 45/75 (60%)
Query: 105 LSTKKEESRVNLIMTDYCMPGMTGYDLLKRLKVS-SWKDVPVVVMSSENVPSRVTMCLEE 163
L K + ++LI+ D MP M GY+ ++ ++++ ++P++ ++++ +P+ CL
Sbjct: 812 LEILKNNTNIDLILMDIMMPNMDGYETMEHIRMNLGLHEIPIIALTAKAMPNDKEKCLSA 871
Query: 164 GAEEFLLKPVRLSDL 178
GA +++ KP+ L L
Sbjct: 872 GASDYISKPLNLHQL 886
>TIGR_CMR|BA_0994 [details] [associations]
symbol:BA_0994 "response regulator" species:198094
"Bacillus anthracis str. Ames" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR001932 Pfam:PF00072 Pfam:PF07228 PROSITE:PS50110
SMART:SM00331 SMART:SM00448 GO:GO:0003824 GO:GO:0006355
GO:GO:0035556 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0008152 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 SUPFAM:SSF81606 HSSP:Q9A5I4
OMA:ERKWGDL RefSeq:NP_843495.1 RefSeq:YP_017622.1
RefSeq:YP_027204.1 ProteinModelPortal:Q81U90 DNASU:1088940
EnsemblBacteria:EBBACT00000010036 EnsemblBacteria:EBBACT00000013718
EnsemblBacteria:EBBACT00000020226 GeneID:1088940 GeneID:2814732
GeneID:2850195 KEGG:ban:BA_0994 KEGG:bar:GBAA_0994 KEGG:bat:BAS0930
HOGENOM:HOG000084736 ProtClustDB:CLSK916048
BioCyc:BANT260799:GJAJ-1008-MONOMER
BioCyc:BANT261594:GJ7F-1053-MONOMER Uniprot:Q81U90
Length = 380
Score = 117 (46.2 bits), Expect = 0.00011, P = 0.00011
Identities = 33/142 (23%), Positives = 79/142 (55%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQ-VTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKK 109
+L VDD+ ++ +++ +L+ + YQ + ++S + EY+ + +S+
Sbjct: 3 ILIVDDNPVNIFVIKKILKQAGYQDLVSLNSAQELFEYI----HFGKDSS---------- 48
Query: 110 EESRVNLIMTDYCMPGMTGYDLLKRL-KVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEF 168
+ ++LI+ D MP + G ++ +RL K +KD+P++ +++ +++ L+ GA ++
Sbjct: 49 RHNEIDLILLDIMMPEIDGLEVCRRLQKEEKFKDIPIIFVTALEDANKLAEALDIGAMDY 108
Query: 169 LLKPV-RLSDLEKLQPRL-LKS 188
+ KP+ ++ L +++ L LKS
Sbjct: 109 ITKPINKVELLARMRVALCLKS 130
>ASPGD|ASPL0000016988 [details] [associations]
symbol:srrC species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0000156
"phosphorelay response regulator activity" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0000160 "phosphorelay signal transduction system"
evidence=IEA] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 GO:GO:0005622
EMBL:BN001302 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 EMBL:AACD01000067 RefSeq:XP_661738.1
ProteinModelPortal:Q5B5P6 EnsemblFungi:CADANIAT00004538
GeneID:2873550 KEGG:ani:AN4134.2 HOGENOM:HOG000200821
OrthoDB:EOG412QGQ Uniprot:Q5B5P6
Length = 171
Score = 108 (43.1 bits), Expect = 0.00013, P = 0.00013
Identities = 39/141 (27%), Positives = 66/141 (46%)
Query: 50 HVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKK 109
H+L +D+ +++K++ LL+ S V+ +G +AL+YL +ASP+T
Sbjct: 3 HILVAEDNKVNQKLVTRLLQRLSCTVSIAHNGQEALDYL----------SASPAT----- 47
Query: 110 EESRVNLIMTDYCMPGMTGYDLLKRLKVS-------SWKDVPVVVMS--SENVPSRVTMC 160
R ++I+ D MP M G L+ S P++ M+ S VP +
Sbjct: 48 -HHRPDVILMDTAMPVMDGIRATSILRTSLPFTVDPKIPTTPIIAMTPISLRVPGQTEEW 106
Query: 161 LEEGAEEFLLKPVRLSDLEKL 181
L+ G ++ L KP RL L +
Sbjct: 107 LKRGFDDVLPKPFRLETLRMM 127
>TIGR_CMR|GSU_1316 [details] [associations]
symbol:GSU_1316 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR003018
InterPro:IPR001789 Pfam:PF00072 Pfam:PF13185 PROSITE:PS50110
SMART:SM00065 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 RefSeq:NP_952369.1
ProteinModelPortal:Q74DK0 DNASU:2685737 GeneID:2685737
KEGG:gsu:GSU1316 PATRIC:22025407 HOGENOM:HOG000276092 OMA:NMVLTDI
ProtClustDB:CLSK828294 BioCyc:GSUL243231:GH27-1295-MONOMER
Uniprot:Q74DK0
Length = 324
Score = 115 (45.5 bits), Expect = 0.00014, P = 0.00014
Identities = 34/105 (32%), Positives = 53/105 (50%)
Query: 74 QVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVN-----LIMTDYCMPGMTG 128
QV VD + ++ LEN S S ++ VN +++TD +PGM+G
Sbjct: 8 QVLVVDESAPSRAFIA--STLENGGYIVTSVASGEEAVHEVNAAPFDILVTDINLPGMSG 65
Query: 129 YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPV 173
+LLK LK S+ D+ VV+++S L GA +F++KPV
Sbjct: 66 LNLLKLLK-DSFPDLEVVIVTSNASSFTAIKALRLGAYDFIIKPV 109
>TIGR_CMR|GSU_2484 [details] [associations]
symbol:GSU_2484 "DNA-binding response regulator KdpE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815 KO:K07667
HSSP:P08402 RefSeq:NP_953530.1 ProteinModelPortal:Q74AA6 SMR:Q74AA6
GeneID:2687839 KEGG:gsu:GSU2484 PATRIC:22027811 OMA:HEANAIN
ProtClustDB:CLSK828856 BioCyc:GSUL243231:GH27-2517-MONOMER
Uniprot:Q74AA6
Length = 234
Score = 101 (40.6 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 19/66 (28%), Positives = 38/66 (57%)
Query: 113 RVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKP 172
R +LI+ D +P + G ++++R++ W VP++V+S L+ GA+++L KP
Sbjct: 54 RPDLILLDLGLPDLDGVEVIRRIR--EWSPVPIIVLSVREREDDKVHALDAGADDYLTKP 111
Query: 173 VRLSDL 178
+ +L
Sbjct: 112 FGIGEL 117
Score = 45 (20.9 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKAL 85
+L VDD R+ L +L + + ++G AL
Sbjct: 13 ILIVDDEAAIRRFLRTVLDAEEFSLHQAETGHAAL 47
>TIGR_CMR|GSU_2693 [details] [associations]
symbol:GSU_2693 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820
RefSeq:NP_953738.1 ProteinModelPortal:Q749P9 GeneID:2687548
KEGG:gsu:GSU2693 PATRIC:22028241 OMA:VEMHRAR
BioCyc:GSUL243231:GH27-2669-MONOMER Uniprot:Q749P9
Length = 128
Score = 95 (38.5 bits), Expect = 0.00016, P = 0.00016
Identities = 30/107 (28%), Positives = 51/107 (47%)
Query: 75 VTCVDSGDKALEYLGLI---DNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTGYDL 131
V VD L LGL+ +LE S + + ++ ++++TD+ MPGM G +L
Sbjct: 6 VLIVDDDVNFLYVLGLLLESKDLEVTSASRGAEAVDIVRKTTFDMVITDFSMPGMNGLEL 65
Query: 132 LKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDL 178
+K D+PV++++ E + M + G L KPV + L
Sbjct: 66 AAAVK-ELHPDLPVMMVTCEVTSDLIEMATDVGICRVLDKPVNVGRL 111
>UNIPROTKB|P06628 [details] [associations]
symbol:spo0F "Sporulation initiation phosphotransferase F"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0005737
GO:GO:0006355 GO:GO:0035556 GO:GO:0046872 GO:GO:0030435
GO:GO:0016301 EMBL:AL009126 GenomeReviews:AL009126_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 EMBL:Z49782 EMBL:X03497 EMBL:M11081
EMBL:M22039 PIR:A24737 RefSeq:NP_391594.1 PDB:1F51 PDB:1FSP
PDB:1NAT PDB:1PEY PDB:1PUX PDB:1SRR PDB:2FSP PDB:2FTK PDB:2JVI
PDB:2JVJ PDB:2JVK PDB:3Q15 PDBsum:1F51 PDBsum:1FSP PDBsum:1NAT
PDBsum:1PEY PDBsum:1PUX PDBsum:1SRR PDBsum:2FSP PDBsum:2FTK
PDBsum:2JVI PDBsum:2JVJ PDBsum:2JVK PDBsum:3Q15
ProteinModelPortal:P06628 SMR:P06628 DIP:DIP-58965N IntAct:P06628
EnsemblBacteria:EBBACT00000000330 GeneID:937041 KEGG:bsu:BSU37130
PATRIC:18979462 GenoList:BSU37130 KO:K02490 OMA:IRVIIMT
ProtClustDB:CLSK873695 BioCyc:BSUB:BSU37130-MONOMER
BindingDB:P06628 ChEMBL:CHEMBL3857 EvolutionaryTrace:P06628
Uniprot:P06628
Length = 124
Score = 86 (35.3 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 19/68 (27%), Positives = 38/68 (55%)
Query: 111 ESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170
+ R +L++ D +PGM G ++LKR+KV +++ V++M++ + E GA
Sbjct: 45 KERPDLVLLDMKIPGMDGIEILKRMKVID-ENIRVIIMTAYGELDMIQESKELGALTHFA 103
Query: 171 KPVRLSDL 178
KP + ++
Sbjct: 104 KPFDIDEI 111
Score = 40 (19.1 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALE 86
+L VDD R +L + YQ +G +AL+
Sbjct: 6 ILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALD 41
>TIGR_CMR|SPO_0132 [details] [associations]
symbol:SPO_0132 "sensor histidine kinase/response
regulator" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000155
"phosphorelay sensor kinase activity" evidence=ISS] [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003661
InterPro:IPR004358 InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512
Pfam:PF02518 PRINTS:PR00344 PROSITE:PS50110 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 GO:GO:0005524
GO:GO:0016020 GO:GO:0006355 GO:GO:0035556 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0005622 GO:GO:0023014 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 KO:K00936 RefSeq:YP_165404.1
ProteinModelPortal:Q5LWT5 GeneID:3196450 KEGG:sil:SPO0132
PATRIC:23373509 HOGENOM:HOG000250541 OMA:RRLWHSI
ProtClustDB:CLSK933165 Uniprot:Q5LWT5
Length = 739
Score = 84 (34.6 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 50 HVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLG-LIDNLENNSN 99
HVL VDD ++R ILE L +VTC SG +ALE + +D + ++ N
Sbjct: 461 HVLIVDDLAVNRAILEKQLAQLGVRVTCCASGAQALEKMSDCVDLVLSDHN 511
Score = 79 (32.9 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 18/68 (26%), Positives = 36/68 (52%)
Query: 110 EESRVNLIMTDYCMPGMTGYDL---LKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAE 166
++ + +LI D MP M G ++RL+ + + VP+V +++ + L G +
Sbjct: 647 QDFQPDLIFMDISMPKMDGKQATGEIRRLEAGTGRHVPIVALTAHAMAGDAEGILAAGLD 706
Query: 167 EFLLKPVR 174
++L KP+R
Sbjct: 707 QYLTKPLR 714
>UNIPROTKB|Q7D1A8 [details] [associations]
symbol:cheY "Chemotaxis receiver protein" species:176299
"Agrobacterium fabrum str. C58" [GO:0006928 "cellular component
movement" evidence=IGC] [GO:0052143 "chemotaxis on or near host
involved in symbiotic interaction" evidence=IGC] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 GO:GO:0006928 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 EMBL:AE007869 GenomeReviews:AE007869_GR
GO:GO:0052143 KO:K03413 ProtClustDB:CLSK881447 HSSP:P06143
RefSeq:NP_353545.1 ProteinModelPortal:Q7D1A8 STRING:Q7D1A8
GeneID:1132554 KEGG:atu:Atu0516 PATRIC:20810735 OMA:KNDRYRA
Uniprot:Q7D1A8
Length = 121
Score = 82 (33.9 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 15/64 (23%), Positives = 40/64 (62%)
Query: 110 EESRVNLIMTDYCMPGMTGYDLLKRLKVSS-WKDVPVVVMSSENVPSRVTMCLEEGAEEF 168
E+S ++I+TD MP + G+ ++ ++ + ++ +P++V+++E+ + + GA +
Sbjct: 43 EQSNPDVIVTDINMPRLDGFGFIEGVRRNEKYRAIPILVLTTESDAEKKNRARQAGATGW 102
Query: 169 LLKP 172
++KP
Sbjct: 103 IVKP 106
Score = 46 (21.3 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYL 88
VL VDDS R +L L + ++ + G + LE L
Sbjct: 5 VLTVDDSRTIRNMLLVTLNNAGFETIQAEDGIEGLEVL 42
>NCBI_NP|NP_353545.1 [details] [associations]
symbol:cheY "chemotaxisreceiverprotein" species:176299
"Agrobacterium fabrum str. C58" [GO:0052143 "chemotaxis on or near
host involved in symbiotic interaction" evidence=IGC] [GO:0006928
"cellular component movement" evidence=IGC] REFSEQ:NC_003062
Ncbi:NP_353545
Length = 121
Score = 82 (33.9 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 15/64 (23%), Positives = 40/64 (62%)
Query: 110 EESRVNLIMTDYCMPGMTGYDLLKRLKVSS-WKDVPVVVMSSENVPSRVTMCLEEGAEEF 168
E+S ++I+TD MP + G+ ++ ++ + ++ +P++V+++E+ + + GA +
Sbjct: 43 EQSNPDVIVTDINMPRLDGFGFIEGVRRNEKYRAIPILVLTTESDAEKKNRARQAGATGW 102
Query: 169 LLKP 172
++KP
Sbjct: 103 IVKP 106
Score = 46 (21.3 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYL 88
VL VDDS R +L L + ++ + G + LE L
Sbjct: 5 VLTVDDSRTIRNMLLVTLNNAGFETIQAEDGIEGLEVL 42
>TIGR_CMR|DET_0170 [details] [associations]
symbol:DET_0170 "DNA-binding response regulator"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034819
RefSeq:YP_180918.1 ProteinModelPortal:Q3ZA31 STRING:Q3ZA31
GeneID:3230558 KEGG:det:DET0170 PATRIC:21607423 OMA:RIRVNIR
ProtClustDB:CLSK741609 BioCyc:DETH243164:GJNF-170-MONOMER
Uniprot:Q3ZA31
Length = 232
Score = 111 (44.1 bits), Expect = 0.00019, P = 0.00019
Identities = 25/83 (30%), Positives = 51/83 (61%)
Query: 110 EESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFL 169
E ++ + I+ D +P ++GY++L+++++ S ++PV++++ N S + L GA+++L
Sbjct: 43 ETAKPDAIILDIGLPDISGYEVLRQIRLFS--ELPVIILTIRNEESDIVKALSLGADDYL 100
Query: 170 LKPVRLSDLE---KLQPRLLKSP 189
+KP R +L K R L SP
Sbjct: 101 VKPFRQMELLARIKAISRRLHSP 123
>UNIPROTKB|Q7Y0W3 [details] [associations]
symbol:Q7Y0W3 "Two-component response regulator EHD1"
species:39946 "Oryza sativa Indica Group" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0048576 "positive regulation of short-day
photoperiodism, flowering" evidence=IMP] InterPro:IPR001005
InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 GO:GO:0006351 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009908 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294
eggNOG:NOG265546 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:AB092508
ProteinModelPortal:Q7Y0W3 SMR:Q7Y0W3 KEGG:dosa:Os10t0463400-01
Gramene:Q7Y0W3 HOGENOM:HOG000084878 GO:GO:0048576 Uniprot:Q7Y0W3
Length = 341
Score = 96 (38.9 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 23/74 (31%), Positives = 42/74 (56%)
Query: 114 VNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPV 173
V+L+++D P G +L+ +V+S +P V+M+S + V + GA +FLLKPV
Sbjct: 57 VDLVISDAFFPTEDGLLILQ--EVTSKFGIPTVIMASSGDTNTVMKYVANGAFDFLLKPV 114
Query: 174 RLSDLEKLQPRLLK 187
R+ +L + + +
Sbjct: 115 RIEELSNIWQHIFR 128
Score = 56 (24.8 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDN 93
VL +DD ++E+LL SY+VT + +A+ ++ +DN
Sbjct: 13 VLVIDDDCSYLSVMEDLLLKCSYKVTTYKNVREAVPFI--LDN 53
>UNIPROTKB|Q7Y0W5 [details] [associations]
symbol:EHD1 "Two-component response regulator EHD1"
species:39947 "Oryza sativa Japonica Group" [GO:0048576 "positive
regulation of short-day photoperiodism, flowering" evidence=IMP]
InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
GO:GO:0005634 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:DP000086 EMBL:CM000147 GO:GO:0009908 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294
InterPro:IPR017053 PIRSF:PIRSF036392 GO:GO:0048576 EMBL:AB092506
EMBL:AB092507 EMBL:AC027038 ProteinModelPortal:Q7Y0W5
Gramene:Q7Y0W5 eggNOG:KOG1601 Uniprot:Q7Y0W5
Length = 341
Score = 96 (38.9 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 23/74 (31%), Positives = 42/74 (56%)
Query: 114 VNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPV 173
V+L+++D P G +L+ +V+S +P V+M+S + V + GA +FLLKPV
Sbjct: 57 VDLVISDAFFPTEDGLLILQ--EVTSKFGIPTVIMASSGDTNTVMKYVANGAFDFLLKPV 114
Query: 174 RLSDLEKLQPRLLK 187
R+ +L + + +
Sbjct: 115 RIEELSNIWQHIFR 128
Score = 56 (24.8 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDN 93
VL +DD ++E+LL SY+VT + +A+ ++ +DN
Sbjct: 13 VLVIDDDCSYLSVMEDLLLKCSYKVTTYKNVREAVPFI--LDN 53
>TIGR_CMR|CHY_1125 [details] [associations]
symbol:CHY_1125 "response regulator" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR005471 Pfam:PF00072 Pfam:PF09339
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
RefSeq:YP_359971.1 ProteinModelPortal:Q3AD13 STRING:Q3AD13
GeneID:3727659 KEGG:chy:CHY_1125 PATRIC:21275390
HOGENOM:HOG000131195 OMA:RNEYLWI ProtClustDB:CLSK289825
BioCyc:CHYD246194:GJCN-1124-MONOMER Uniprot:Q3AD13
Length = 205
Score = 108 (43.1 bits), Expect = 0.00030, P = 0.00030
Identities = 25/81 (30%), Positives = 47/81 (58%)
Query: 115 NLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVR 174
++++ DY MP + G D ++R++ + VP++V++ + LE GA +F LKP++
Sbjct: 46 DMVLVDYHMPALDGLDTVERIREID-QGVPIIVLTVDERQQIADKFLEVGASDFALKPIK 104
Query: 175 LSDLE---KLQPRLLKSPNRS 192
DL K+ R+++ NRS
Sbjct: 105 APDLIARLKVHARMIEI-NRS 124
>UNIPROTKB|Q1DF43 [details] [associations]
symbol:MXAN_0460 "Response regulator" species:246197
"Myxococcus xanthus DK 1622" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 GO:GO:0005622
EMBL:CP000113 GenomeReviews:CP000113_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
RefSeq:YP_628730.1 ProteinModelPortal:Q1DF43 IntAct:Q1DF43
STRING:Q1DF43 GeneID:4103270 KEGG:mxa:MXAN_0460 PATRIC:22643509
HOGENOM:HOG000025389 OMA:NLELEGH ProtClustDB:CLSK955207
BioCyc:MXAN246197:GIWU-455-MONOMER Uniprot:Q1DF43
Length = 255
Score = 107 (42.7 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 110 EESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFL 169
E+ V++++TD MPG+ G +LL+R+K D+PVV+M++ V L EGA L
Sbjct: 50 EKQSVDVVLTDIRMPGLHGVELLRRIKQER-PDMPVVLMTAFTAEELVDDALAEGAFTVL 108
Query: 170 LKP 172
KP
Sbjct: 109 PKP 111
Score = 36 (17.7 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYL 88
+L VDD R L L + + V +G++AL L
Sbjct: 12 ILLVDDEESLRITLAANLELEGHTVLEAANGEEALRLL 49
>TIGR_CMR|CPS_3950 [details] [associations]
symbol:CPS_3950 "response regulator/GGDEF domain protein"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 Pfam:PF00990 Pfam:PF00563 GO:GO:0006355 GO:GO:0005622
EMBL:CP000083 GenomeReviews:CP000083_GR SUPFAM:SSF55073
GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160 SMART:SM00267
TIGRFAMs:TIGR00254 PROSITE:PS50887 Gene3D:3.20.20.450
InterPro:IPR001633 SMART:SM00052 SUPFAM:SSF141868 PROSITE:PS50883
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000136246 RefSeq:YP_270608.1 ProteinModelPortal:Q47X62
STRING:Q47X62 GeneID:3523052 KEGG:cps:CPS_3950 PATRIC:21470787
OMA:NITEVES ProtClustDB:CLSK768238
BioCyc:CPSY167879:GI48-3963-MONOMER Uniprot:Q47X62
Length = 566
Score = 88 (36.0 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 23/84 (27%), Positives = 44/84 (52%)
Query: 110 EESRVNLIMTDYCMPGMTGYDLLKRLKVSSWK-DVPVVVMSSENVPSRVTMCLEEGAEEF 168
++S + I+ DY +P G +LL +K + D V++MS+ C+ GA++F
Sbjct: 46 QDSSFDAILLDYNLPQRNGIELLLEIKGDPNRHDTAVIMMSTSKEDELALNCINAGAQDF 105
Query: 169 LLKPVRLSDLEKLQPRLLKSPNRS 192
L+K ++ +LQ ++ + RS
Sbjct: 106 LVKTE--INVFRLQRAIVNAQARS 127
Score = 69 (29.3 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 17/40 (42%), Positives = 27/40 (67%)
Query: 51 VLAVDDSLIDRKILENLLRVS--SYQVTCVDSGDKALEYL 88
VL VDD ++DR++++ L+ S S +T V+S D AL+ L
Sbjct: 6 VLIVDDDIVDRELIKRTLKRSDISCNITEVESVDDALKNL 45
>UNIPROTKB|Q74CL9 [details] [associations]
symbol:GSU1654 "Response receiver-modulated cyclic
diguanylate phosphodiesterase" species:243231 "Geobacter
sulfurreducens PCA" [GO:0003674 "molecular_function" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR001789
InterPro:IPR003607 InterPro:IPR006674 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 SMART:SM00471 GO:GO:0006355 GO:GO:0035556
GO:GO:0046872 GO:GO:0008152 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0008081 Gene3D:1.10.3210.10
InterPro:IPR006675 TIGRFAMs:TIGR00277 HOGENOM:HOG000266481
RefSeq:NP_952705.1 ProteinModelPortal:Q74CL9 GeneID:2687011
KEGG:gsu:GSU1654 PATRIC:22026155 OMA:IVLSHQE ProtClustDB:CLSK828468
BioCyc:GSUL243231:GH27-1639-MONOMER Uniprot:Q74CL9
Length = 349
Score = 105 (42.0 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 24/70 (34%), Positives = 43/70 (61%)
Query: 112 SRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLK 171
+RV L + D MPG +G DLLK +K S V ++V + ++ + + C+ GA++++LK
Sbjct: 45 NRVELALLDIMMPGTSGVDLLKEIKKISADTVVLMVTAISDMETAMR-CIHLGADDYILK 103
Query: 172 PVRLSDLEKL 181
P D+E++
Sbjct: 104 PF---DIERV 110
Score = 43 (20.2 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYL 88
+L VDD + R +L L Y S D+A + L
Sbjct: 5 ILTVDDEEMIRDLLVTALSREGYDCFQAGSADEARDVL 42
>TIGR_CMR|GSU_1654 [details] [associations]
symbol:GSU_1654 "response regulator, putative"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001789 InterPro:IPR003607
InterPro:IPR006674 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
SMART:SM00471 GO:GO:0006355 GO:GO:0035556 GO:GO:0046872
GO:GO:0008152 GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0008081
Gene3D:1.10.3210.10 InterPro:IPR006675 TIGRFAMs:TIGR00277
HOGENOM:HOG000266481 RefSeq:NP_952705.1 ProteinModelPortal:Q74CL9
GeneID:2687011 KEGG:gsu:GSU1654 PATRIC:22026155 OMA:IVLSHQE
ProtClustDB:CLSK828468 BioCyc:GSUL243231:GH27-1639-MONOMER
Uniprot:Q74CL9
Length = 349
Score = 105 (42.0 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 24/70 (34%), Positives = 43/70 (61%)
Query: 112 SRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLK 171
+RV L + D MPG +G DLLK +K S V ++V + ++ + + C+ GA++++LK
Sbjct: 45 NRVELALLDIMMPGTSGVDLLKEIKKISADTVVLMVTAISDMETAMR-CIHLGADDYILK 103
Query: 172 PVRLSDLEKL 181
P D+E++
Sbjct: 104 PF---DIERV 110
Score = 43 (20.2 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYL 88
+L VDD + R +L L Y S D+A + L
Sbjct: 5 ILTVDDEEMIRDLLVTALSREGYDCFQAGSADEARDVL 42
>TIGR_CMR|DET_0232 [details] [associations]
symbol:DET_0232 "DNA-binding response regulator"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034819
RefSeq:YP_180980.1 ProteinModelPortal:Q3Z9W9 STRING:Q3Z9W9
GeneID:3230435 KEGG:det:DET0232 PATRIC:21607535 OMA:SIRELWI
ProtClustDB:CLSK741610 BioCyc:DETH243164:GJNF-232-MONOMER
Uniprot:Q3Z9W9
Length = 227
Score = 108 (43.1 bits), Expect = 0.00042, P = 0.00042
Identities = 24/77 (31%), Positives = 44/77 (57%)
Query: 110 EESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFL 169
E ++I+ D +P M G+D+LK+++ ++ DVP+++++ S V L GA +++
Sbjct: 43 ESVNPDIILLDLGLPDMNGFDVLKQIR--NFSDVPIIILTVRGDESDVVRGLTLGANDYI 100
Query: 170 LKPVRLSDLEKLQPRLL 186
KP R +L RLL
Sbjct: 101 TKPFRQMELLARVRRLL 117
>TIGR_CMR|SO_1558 [details] [associations]
symbol:SO_1558 "phosphate regulon response regulator PhoB"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR011879 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0006817
HOGENOM:HOG000034819 HSSP:P08402 KO:K07657 OMA:QVLEMGP
TIGRFAMs:TIGR02154 RefSeq:NP_717171.2 ProteinModelPortal:Q8EGP1
GeneID:1169364 KEGG:son:SO_1558 PATRIC:23522760
ProtClustDB:CLSK906318 Uniprot:Q8EGP1
Length = 229
Score = 98 (39.6 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 24/85 (28%), Positives = 47/85 (55%)
Query: 110 EESRVNLIMTDYCMPGMTGYDLLKRLKVSSW-KDVPVVVMSSENVPSRVTMCLEEGAEEF 168
+E +LI+ D+ PG +G L KRLK + + +P++++++ LE GA+++
Sbjct: 43 KEPYPDLILLDWMFPGGSGIQLAKRLKQDEFTRQIPIIMLTARGEEEDKVKGLEVGADDY 102
Query: 169 LLKPVRLSDL-EKLQPRLLKS-PNR 191
+ KP +L +++ L +S P R
Sbjct: 103 ITKPFSPKELVARIKAVLRRSAPTR 127
Score = 44 (20.5 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 48 TFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYL 88
T +L V+D L R++L ++ + + + D A+ L
Sbjct: 2 TARILIVEDELAIREMLTFVMEQHGFTTSAAEDFDSAIALL 42
>TIGR_CMR|CPS_1619 [details] [associations]
symbol:CPS_1619 "DNA-binding response regulator"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR009061
InterPro:IPR010093 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0000166 GO:GO:0035556 GO:GO:0003677
GO:GO:0005622 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745 SUPFAM:SSF46955
TIGRFAMs:TIGR01764 ProtClustDB:CLSK741041 RefSeq:YP_268357.1
ProteinModelPortal:Q485A8 STRING:Q485A8 GeneID:3520728
KEGG:cps:CPS_1619 PATRIC:21466431 HOGENOM:HOG000133916 OMA:DEYEIAM
BioCyc:CPSY167879:GI48-1696-MONOMER Uniprot:Q485A8
Length = 185
Score = 105 (42.0 bits), Expect = 0.00049, P = 0.00049
Identities = 21/72 (29%), Positives = 42/72 (58%)
Query: 110 EESRVNLIMTDYCMPGMTGYDLLKRLKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAEEF 168
E+ + ++I D MP + G+ + K ++ + + K+ P++ MS + + + GA F
Sbjct: 106 EKIKPSIIFLDLVMPDIDGFAVCKHIRSNEASKNTPIIAMSGLSQQENIEKVIASGANTF 165
Query: 169 LLKPVRLSDLEK 180
L+KP+RLS L++
Sbjct: 166 LMKPIRLSVLKQ 177
>TIGR_CMR|NSE_0512 [details] [associations]
symbol:NSE_0512 "response regulator/GGDEF domain protein"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 Pfam:PF00990 GO:GO:0006355 GO:GO:0005622
SUPFAM:SSF55073 GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160
SMART:SM00267 TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG3706 EMBL:CP000237
GenomeReviews:CP000237_GR KO:K02488 HOGENOM:HOG000167204
ProtClustDB:PRK09581 RefSeq:YP_506396.1 ProteinModelPortal:Q2GDQ0
STRING:Q2GDQ0 GeneID:3931788 KEGG:nse:NSE_0512 PATRIC:22681073
OMA:TELGIND BioCyc:NSEN222891:GHFU-532-MONOMER Uniprot:Q2GDQ0
Length = 456
Score = 93 (37.8 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 19/66 (28%), Positives = 39/66 (59%)
Query: 110 EESRVNLIMTDYCMPGMTGYDLLKRLKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAEEF 168
++ + ++I+ D MP M G++ +RLK + +PV+++++ N L GA++F
Sbjct: 43 KQHQPDVILLDVMMPEMDGFETCRRLKSDYATMHIPVIIVTALNDIENKVEGLNSGADDF 102
Query: 169 LLKPVR 174
L+KP +
Sbjct: 103 LVKPAK 108
Score = 59 (25.8 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALE 86
+L VDD + KILE L YQV SG A+E
Sbjct: 5 ILVVDDIPSNIKILEIKLTAKYYQVITASSGIAAIE 40
>UNIPROTKB|Q11156 [details] [associations]
symbol:regX3 "Sensory transduction protein regX3"
species:1773 "Mycobacterium tuberculosis" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0009405 "pathogenesis"
evidence=IDA] [GO:0019217 "regulation of fatty acid metabolic
process" evidence=IDA] [GO:0019220 "regulation of phosphate
metabolic process" evidence=IDA] [GO:0080134 "regulation of
response to stress" evidence=IDA] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0009405
GO:GO:0006355 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0019217 GO:GO:0006351
EMBL:BX842573 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034819 SUPFAM:SSF46894
GO:GO:0080134 GO:GO:0019220 EMBL:Y13628 PIR:F70744
RefSeq:NP_215005.1 RefSeq:NP_334919.1 RefSeq:YP_006513821.1
PDB:2OQR PDBsum:2OQR ProteinModelPortal:Q11156 SMR:Q11156
PRIDE:Q11156 EnsemblBacteria:EBMYCT00000001447
EnsemblBacteria:EBMYCT00000072066 GeneID:13318362 GeneID:887195
GeneID:923874 KEGG:mtc:MT0510 KEGG:mtu:Rv0491 KEGG:mtv:RVBD_0491
PATRIC:18122830 TubercuList:Rv0491 KO:K07776 OMA:DVDSHTV
ProtClustDB:CLSK790554 EvolutionaryTrace:Q11156 Uniprot:Q11156
Length = 227
Score = 98 (39.6 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 21/77 (27%), Positives = 47/77 (61%)
Query: 102 PSTLSTKKEESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCL 161
P+ L+ + + + ++++ D +PGM+G D+ K+L+ S VPV+++++ + + L
Sbjct: 35 PAALA-EFDRAGADIVLLDLMLPGMSGTDVCKQLRARS--SVPVIMVTARDSEIDKVVGL 91
Query: 162 EEGAEEFLLKPVRLSDL 178
E GA++++ KP +L
Sbjct: 92 ELGADDYVTKPYSAREL 108
Score = 43 (20.2 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 51 VLAVDD--SLIDRKILENLLRVSSYQVTCVDSGDKAL 85
VL V+D SL D L LLR ++ T V G AL
Sbjct: 4 VLIVEDEESLADP--LAFLLRKEGFEATVVTDGPAAL 38
>TIGR_CMR|BA_3067 [details] [associations]
symbol:BA_3067 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P06628
RefSeq:NP_845397.1 RefSeq:YP_019708.1 RefSeq:YP_029111.1
ProteinModelPortal:Q81NV5 DNASU:1088217
EnsemblBacteria:EBBACT00000009080 EnsemblBacteria:EBBACT00000017281
EnsemblBacteria:EBBACT00000021032 GeneID:1088217 GeneID:2817324
GeneID:2850761 KEGG:ban:BA_3067 KEGG:bar:GBAA_3067 KEGG:bat:BAS2853
OMA:LTKEHFF ProtClustDB:CLSK886597
BioCyc:BANT260799:GJAJ-2916-MONOMER
BioCyc:BANT261594:GJ7F-3019-MONOMER Uniprot:Q81NV5
Length = 223
Score = 83 (34.3 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 17/59 (28%), Positives = 35/59 (59%)
Query: 114 VNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKP 172
++L++ D +PG GY + K++K + ++P++ +S+ N L G EE+++KP
Sbjct: 46 IDLVVMDVMLPGEDGYQITKKIK-NLGLNIPIIFLSARNDMDSKLKGLTIG-EEYMIKP 102
Score = 61 (26.5 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 49 FHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLID 92
+++L V+D LI +L+ +L+ Y V G K L+ + ID
Sbjct: 4 YNILIVEDDLIIGDLLQKILQREKYNVYWEKEGRKVLDIIHEID 47
>TIGR_CMR|BA_1660 [details] [associations]
symbol:BA_1660 "chemotaxis response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006935 "chemotaxis" evidence=ISS] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
OMA:PFQAPKV RefSeq:NP_844107.1 RefSeq:YP_018295.1
RefSeq:YP_027808.1 HSSP:Q56312 ProteinModelPortal:Q81SI8 SMR:Q81SI8
DNASU:1083740 EnsemblBacteria:EBBACT00000009828
EnsemblBacteria:EBBACT00000015597 EnsemblBacteria:EBBACT00000020958
GeneID:1083740 GeneID:2817294 GeneID:2851539 KEGG:ban:BA_1660
KEGG:bar:GBAA_1660 KEGG:bat:BAS1541 ProtClustDB:CLSK916318
BioCyc:BANT260799:GJAJ-1613-MONOMER
BioCyc:BANT261594:GJ7F-1681-MONOMER Uniprot:Q81SI8
Length = 122
Score = 77 (32.2 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 19/66 (28%), Positives = 36/66 (54%)
Query: 108 KKEESRVNLIMTDYCMPGMTGYDLLKRL-KVSSWKDVPVVVMSSENVPSRVTMCLEEGAE 166
K +E + +++ D MP M G + LK + K+ + VV+ S+ V ++ GA+
Sbjct: 43 KYKELQPDIVTLDITMPEMDGLEALKEIIKIDA--SAKVVICSAMGQQGMVLDAIKGGAK 100
Query: 167 EFLLKP 172
+F++KP
Sbjct: 101 DFIVKP 106
Score = 52 (23.4 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 12/38 (31%), Positives = 27/38 (71%)
Query: 51 VLAVDDSLIDRKILENLLRVSS-YQVTC-VDSGDKALE 86
+L VDD++ R +++NLL+ +S ++V ++G +A++
Sbjct: 5 ILVVDDAMFMRTMIKNLLKSNSEFEVIGEAENGVEAIQ 42
>UNIPROTKB|Q4K714 [details] [associations]
symbol:PFL_4888 "Sigma-54 dependent DNA-binding response
regulator" species:220664 "Pseudomonas protegens Pf-5" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0035556
"intracellular signal transduction" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0006355
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:CP000076
GenomeReviews:CP000076_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
KO:K02481 RefSeq:YP_261969.1 ProteinModelPortal:Q4K714
STRING:Q4K714 GeneID:3479299 KEGG:pfl:PFL_4888 PATRIC:19879244
OMA:CVERATI ProtClustDB:CLSK937927
BioCyc:PFLU220664:GIX8-4929-MONOMER Uniprot:Q4K714
Length = 465
Score = 109 (43.4 bits), Expect = 0.00070, Sum P(2) = 0.00070
Identities = 20/70 (28%), Positives = 41/70 (58%)
Query: 110 EESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFL 169
E+ ++L+++D+ MPGM G LL +K + +PV+VM++ + + GA +++
Sbjct: 43 EQEDIDLVISDWRMPGMDGPQLLGEIK-QRYPQLPVIVMTAYSTVKNAVQSMRNGAYDYI 101
Query: 170 LKPVRLSDLE 179
KP + +L+
Sbjct: 102 AKPFDIDELD 111
Score = 39 (18.8 bits), Expect = 0.00070, Sum P(2) = 0.00070
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 48 TFHVLAVDDS--LIDRKILENLLRVSSYQVTCVDSGDKALEYL 88
T ++L VDD L D +L + L + QV +G AL+ L
Sbjct: 2 THNLLVVDDEPKLCD--LLSSALSQNGIQVFTAGNGLHALKVL 42
>TIGR_CMR|BA_3661 [details] [associations]
symbol:BA_3661 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_845926.1 RefSeq:YP_020295.1 RefSeq:YP_029652.1
ProteinModelPortal:Q81Y94 DNASU:1085996
EnsemblBacteria:EBBACT00000012587 EnsemblBacteria:EBBACT00000017515
EnsemblBacteria:EBBACT00000021805 GeneID:1085996 GeneID:2816214
GeneID:2848549 KEGG:ban:BA_3661 KEGG:bar:GBAA_3661 KEGG:bat:BAS3396
OMA:ENTMSLA ProtClustDB:CLSK917123
BioCyc:BANT260799:GJAJ-3457-MONOMER
BioCyc:BANT261594:GJ7F-3567-MONOMER Uniprot:Q81Y94
Length = 225
Score = 89 (36.4 bits), Expect = 0.00083, Sum P(2) = 0.00083
Identities = 21/77 (27%), Positives = 41/77 (53%)
Query: 111 ESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170
E ++LIM D +P + G+ + +R++ S VP++++++ + + E GA+E++
Sbjct: 44 EHEIDLIMLDIMLPEIDGWSVCRRIRKES--AVPIIMLTARSDEDDTLLGFELGADEYVT 101
Query: 171 KPVRLSDLEKLQPRLLK 187
KP L LLK
Sbjct: 102 KPFSPKVLVARAKTLLK 118
Score = 52 (23.4 bits), Expect = 0.00083, Sum P(2) = 0.00083
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALE 86
VL V+D R+I+ + R ++V + G KALE
Sbjct: 5 VLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALE 40
>UNIPROTKB|G3LTY8 [details] [associations]
symbol:phoB "Two-component regulator protein" species:636
"Edwardsiella tarda" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001789 InterPro:IPR001867 InterPro:IPR011879
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0006817 TIGRFAMs:TIGR02154
EMBL:JN543949 Uniprot:G3LTY8
Length = 229
Score = 93 (37.8 bits), Expect = 0.00088, Sum P(2) = 0.00088
Identities = 19/65 (29%), Positives = 40/65 (61%)
Query: 115 NLIMTDYCMPGMTGYDLLKRLKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPV 173
+LI+ D+ +PG +G L+K+LK + +++PV+++++ LE GA++++ KP
Sbjct: 48 DLILLDWMLPGGSGIQLIKQLKREPATREIPVMMLTARGEEEDRVRGLEVGADDYITKPF 107
Query: 174 RLSDL 178
+L
Sbjct: 108 SPKEL 112
Score = 47 (21.6 bits), Expect = 0.00088, Sum P(2) = 0.00088
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 48 TFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYL 88
T +L V+D R ++ +L + YQ +S D AL L
Sbjct: 2 TIRILVVEDETPIRDMVSFVLEQNGYQPLEAESYDGALSQL 42
>UNIPROTKB|Q48GE0 [details] [associations]
symbol:fleR "Sigma-54 dependent DNA-binding response
regulator FleR" species:264730 "Pseudomonas syringae pv.
phaseolicola 1448A" [GO:0007155 "cell adhesion" evidence=ISS]
[GO:0030092 "regulation of flagellum assembly" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0035556
GO:GO:0003677 GO:GO:0007155 GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0017111
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 EMBL:CP000058
GenomeReviews:CP000058_GR eggNOG:COG2204 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 GO:GO:0030092
KO:K10943 RefSeq:YP_275543.1 ProteinModelPortal:Q48GE0
STRING:Q48GE0 GeneID:3555577 KEGG:psp:PSPPH_3385 PATRIC:19976178
OMA:FQMIIDT ProtClustDB:CLSK866333 Uniprot:Q48GE0
Length = 471
Score = 102 (41.0 bits), Expect = 0.00098, Sum P(2) = 0.00098
Identities = 21/63 (33%), Positives = 37/63 (58%)
Query: 110 EESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFL 169
E +L+++D MPGM G+ LL L+ S +PV++M++ R + +GA ++L
Sbjct: 43 EAQPFSLVISDVNMPGMDGHQLLSLLR-SRHPQLPVLLMTAHGAVDRAVDAMRQGAADYL 101
Query: 170 LKP 172
+KP
Sbjct: 102 VKP 104
Score = 46 (21.3 bits), Expect = 0.00098, Sum P(2) = 0.00098
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 48 TFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKAL 85
+ +VL V+D R+ L L ++ Y V S ++AL
Sbjct: 2 SINVLLVEDDRSLREALGETLELAGYGYQAVGSAEEAL 39
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.313 0.129 0.357 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 241 213 0.00084 112 3 11 23 0.43 33
31 0.49 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 103
No. of states in DFA: 601 (64 KB)
Total size of DFA: 160 KB (2095 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 20.38u 0.07s 20.45t Elapsed: 00:00:02
Total cpu time: 20.39u 0.07s 20.46t Elapsed: 00:00:02
Start: Fri May 10 04:23:15 2013 End: Fri May 10 04:23:17 2013
WARNINGS ISSUED: 1